BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045820
(225 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa]
gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 87/173 (50%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L+ +F + + G ++ +N LL + VGR++EA+
Sbjct: 223 KMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCY----------------VGRIDEAF 266
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E++ ++K ++PD+YTYTA+MDGFCKVGRS+EAMELLNEA+E G+ NVV
Sbjct: 267 ELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPNVV--------- 317
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TFN ++ G+ K +L LM + +P S+ L+ L
Sbjct: 318 ---------TFNTLLDGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLLHGL 361
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 22/148 (14%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG-RSNEAMELLNEAIE----RG 153
L+ G+V + ++ GL+ D +++ G C+ + N+ +E+ E E RG
Sbjct: 362 LLWGKVLAGLRIFNEMEGSGLEADERLMNSLVRGLCRKSIKENDLVEVAYEVFEKMKKRG 421
Query: 154 --VTQNVVTL---------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ Q+ L I L Q + +G+IPR IT NNVIQALC GK+ KA
Sbjct: 422 FVIEQSTYALVIQALWVAKKVDDAFINLHQMVRLGYIPRLITINNVIQALCVGGKVDKAF 481
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+L LMYE+ KIPSR S+D+LI +L++Q
Sbjct: 482 YVLVLMYENSKIPSRMSYDLLIHELNRQ 509
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 34/190 (17%)
Query: 28 ESLDLKENPRSLQAQRFVDKIKASPLKERID-IFNSIKKDGTNWSVSDFNDLLMALVMLN 86
ESLD E Q ++ +KA P KER+D I + K+ +++SDFND+LMALV N
Sbjct: 96 ESLDFDEKASKFQVLDLLNAVKALPCKERVDYIVRVLDKEIGFFNISDFNDVLMALVTAN 155
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
E D +K +S + L+P+ +T++ ++ CK EA +L
Sbjct: 156 ESDLVLKLYS----------------GLSCYSLEPNSWTFSIMVRCHCKKKDPGEAKRVL 199
Query: 147 NEAIERGVTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGV 189
++ +++G NV TL L+ +MG + P T+N +++ +C V
Sbjct: 200 DQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCYV 259
Query: 190 GKIHKALLLL 199
G+I +A L+
Sbjct: 260 GRIDEAFELM 269
>gi|255575578|ref|XP_002528689.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531861|gb|EEF33678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 271
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 33/189 (17%)
Query: 28 ESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87
ES+ LQ ++ +D I+A P K R +I + KDG S+SDFNDLLMALV+ NE
Sbjct: 43 ESVKFDAKASRLQVEKLLDAIRALPFKGRTEILDVFGKDGEIPSISDFNDLLMALVIANE 102
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
D A+ +S +V GL PD +T++ ++ CK ++EA +L+
Sbjct: 103 LDLALNMYS----------------DVSTLGLVPDSWTFSIVIRCHCKRNDADEAKRVLD 146
Query: 148 EAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVG 190
+E G+ NVVT L+ +G P T+N +++ LC +G
Sbjct: 147 RMLENGLNPNVVTFTTLINSFCKKGKLQKAYEVIDVMNTIGCQPNVQTYNCLLKGLCYIG 206
Query: 191 KIHKALLLL 199
K+ +A +L
Sbjct: 207 KVEEAYEIL 215
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 19/115 (16%)
Query: 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
F K K E ID+ N+I G +V +N LL L +G+
Sbjct: 167 FCKKGKLQKAYEVIDVMNTI---GCQPNVQTYNCLLKGLCY----------------IGK 207
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
VEEAYE+L ++K ++PD+YTYTA+MDGFCKVGRS EAM+LLNEAIE +T ++
Sbjct: 208 VEEAYEILEDIKKSSIEPDIYTYTAMMDGFCKVGRSEEAMQLLNEAIEMELTDDI 262
>gi|357506669|ref|XP_003623623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498638|gb|AES79841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +K+ +++F +++ G V +N LL L VGRV+EA
Sbjct: 193 KRGKVKKAMEVFEFLERKGLKLGVQAYNCLLRGLAY----------------VGRVDEAV 236
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+LM++K + DVY+Y+A+M+G CKVGRS+EAMEL +EA+ G+
Sbjct: 237 EILMDMKTGNIGVDVYSYSAVMNGLCKVGRSDEAMELFDEAVGVGLR------------- 283
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN +I+ G+ + + +L +M EHG + ++ ++ L
Sbjct: 284 -----PDVVTFNALIEGYSREGREMEGVGVLKMMKEHGCVADLINYKTVLHGL 331
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 43/257 (16%)
Query: 10 TPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKA-SPLKER----IDIFNSIK 64
T S + +S ++ + +D ++ + + V KI + S K + + I ++
Sbjct: 44 TTHSFSITNSTTKHTTNNNLVDFQDKTTRSEIKNLVQKITSLSTSKNKTQLLLQILDNTA 103
Query: 65 KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------------HLMVGRVE 105
+ ++SDFN LLMALV+ + D F+ H +E
Sbjct: 104 SEFQIQTISDFNHLLMALVIAQKPDFCQTMFTKLSSFHLVPDSCTYSIMIRCHCSKNELE 163
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-----GV------ 154
EA +L V +G +PD T T +++ CK G+ +AME+ E +ER GV
Sbjct: 164 EAKRVLFTVLENGFEPDSATITVLINSLCKRGKVKKAMEVF-EFLERKGLKLGVQAYNCL 222
Query: 155 ------TQNVVTLIQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
V +++L ++ G+I + +++ V+ LC VG+ +A+ L G
Sbjct: 223 LRGLAYVGRVDEAVEILMDMKTGNIGVDVYSYSAVMNGLCKVGRSDEAMELFDEAVGVGL 282
Query: 208 IPSRTSHDMLIKKLDQQ 224
P + + LI+ ++
Sbjct: 283 RPDVVTFNALIEGYSRE 299
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A E+ +K GL D T +++ + + +EA+ LN+ +
Sbjct: 375 GLLEDACEVFEKMKERGLVVDKRTVEVMVEALFRGEKFDEALVNLNDMVR---------- 424
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G+ I F VI+ LCG G++ +A+ L L+ +G R S +L+ +L
Sbjct: 425 --------WGYSLEGIAFEEVIEGLCGQGRVDEAVSTLLLLQANGGFLDRVSFGVLVNEL 476
Query: 222 D 222
+
Sbjct: 477 N 477
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 89/191 (46%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA L E + + + G + ++ +N ++ H +GR++EA
Sbjct: 994 CKAGKLDEATALLQRMTRSGCSPNIVTYNTII----------------DGHCKLGRIDEA 1037
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
Y +L + + G +P+V TYT ++D FCK G++ +A+ L+ +E+G N+ T LL
Sbjct: 1038 YHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDM 1097
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
++ G +P +++N VI LC K+H+ +LLL M + +P
Sbjct: 1098 FCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPD 1157
Query: 211 RTSHDMLIKKL 221
+ + +I +
Sbjct: 1158 IVTFNTIIDAM 1168
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RVE A +L + G PDV +YT +++G CK+ + +EA ++++ I+RG NV+T
Sbjct: 280 RVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYG 339
Query: 162 ---------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++L++++ E G+ P IT+NN++ C + +A +L +M +
Sbjct: 340 TLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQT 399
Query: 206 GKIPSRTSHDMLI 218
G P ++ +I
Sbjct: 400 GCPPDAINYSTII 412
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 21/140 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V++A ++ ++ + G P+V TY++++ G CK G+ +EA LL G + N+VT
Sbjct: 962 GKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTY 1021
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+ + + G P +T+ ++ A C GK A+ L+ +M E
Sbjct: 1022 NTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVE 1081
Query: 205 HGKIPSRTSH----DMLIKK 220
G +P+ ++ DM KK
Sbjct: 1082 KGYVPNLFTYNSLLDMFCKK 1101
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++ A++ML +K PDV TY+A+++G CK G ++A ++ E + G N+VT
Sbjct: 561 LDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNT 620
Query: 164 LL----------QRLEMGHI-------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ Q EM I P +IT+ +I LC ++ +A +L M + G
Sbjct: 621 LIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKG 680
Query: 207 KIPSRTSHDMLIKKLDQ 223
+P R ++ L++ L +
Sbjct: 681 CLPDRMTYGTLLRALQK 697
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 17/130 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
R+++A +L + ++G P+V++Y ++ GFCK R A+ LL + + RG +VV
Sbjct: 245 RLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYT 304
Query: 160 TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
T+I L +L+ G P IT+ ++ C VG + A+ L+ M E
Sbjct: 305 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 364
Query: 206 GKIPSRTSHD 215
G P+ +++
Sbjct: 365 GYRPNAITYN 374
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 18/134 (13%)
Query: 103 RVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
+++ A E+ ++ G PDV+TY+ I+D K G+ ++A L+ + + +G + NVVT
Sbjct: 927 KLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTY 986
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LLQR+ G P +T+N +I C +G+I +A LL M +
Sbjct: 987 SSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVD 1046
Query: 205 HGKIPSRTSHDMLI 218
G P+ ++ +L+
Sbjct: 1047 GGCQPNVVTYTVLL 1060
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V E +L + ++ PD+ T+ I+D CK R + A EL N E G T N+VT
Sbjct: 1138 KVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYN 1197
Query: 163 QLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L + G P IT+N VI LC ++ +A L M
Sbjct: 1198 SLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS 1257
Query: 205 HGKIPSRTSHDMLIKKL 221
G P ++ ++I L
Sbjct: 1258 DGLAPDDVTYSIVISSL 1274
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 36/194 (18%)
Query: 64 KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR-------------------V 104
+K G + + +N ++ L D A K F L G +
Sbjct: 1221 RKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFM 1280
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---L 161
+EA +L + +G P TY ++DGFCK G ++A+E+L + +G +VVT
Sbjct: 1281 DEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIF 1340
Query: 162 IQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
I L + L G +P T+T+N +++ C A+ L +M + G
Sbjct: 1341 IDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGC 1400
Query: 208 IPSRTSHDMLIKKL 221
P ++ L+ L
Sbjct: 1401 EPDNATYTTLVGHL 1414
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 40/212 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
KA L+E D+ + + G V+ + L+ AL D+A + + +G
Sbjct: 416 CKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELL--RMSIGMDCAP 473
Query: 103 ----------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
R+ EA L + + PDV TY +++DG CK R N+A L
Sbjct: 474 DVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLF 533
Query: 147 NEAIERGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGV 189
+ GV +VVT ++L+R+ E +P +T++ +I LC
Sbjct: 534 DRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKA 593
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G + KA + M G P+ +++ LI L
Sbjct: 594 GTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGL 625
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 36/190 (18%)
Query: 56 RIDI----FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111
R+DI FN I++ G ++ +N L+ L D A Y +
Sbjct: 1173 RVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQA---------------EYLLR 1217
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR- 167
+ G PD+ TY ++DG CK R + A +L + + G+ + VT +I L +
Sbjct: 1218 EMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKW 1277
Query: 168 -------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
L+ G P IT+ +I C G + KAL +L L+ G P +
Sbjct: 1278 RFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTF 1337
Query: 215 DMLIKKLDQQ 224
+ I L ++
Sbjct: 1338 SIFIDWLSKR 1347
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 98 HLMVGR--VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
H+ R +E A+++L + G PD Y+ I+ GFCK G+ EA +LL + I RG
Sbjct: 378 HVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCR 437
Query: 156 QNVVTL---------------IQLLQRLEMG--HIPRTITFNNVIQALCGVGKIHKALLL 198
+V L Q L R+ +G P + ++ +I ALC ++ +A
Sbjct: 438 PDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESW 497
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L +M ++ P +++ ++ L
Sbjct: 498 LDVMVKNRCYPDVVTYNSVVDGL 520
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S G++ EA+++L + G +PDV + ++D CK + A ELL +I
Sbjct: 413 SGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCA 472
Query: 156 QNVVTLIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLL 198
+VV L+ L P +T+N+V+ LC +I+ A LL
Sbjct: 473 PDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLL 532
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
M G +P ++ ++I
Sbjct: 533 FDRMRAAGVMPDVVTYSIVI 552
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 36/148 (24%)
Query: 62 SIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121
+ ++G N N LL AL+ L A++ + N L P
Sbjct: 834 ATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLCC------------------SP 875
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181
+++T+T ++ G C+ G A ELL E GV QNV I N
Sbjct: 876 NMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNV------------------ILHNV 917
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIP 209
VI+ LC K+ AL L M E G P
Sbjct: 918 VIKGLCSARKLDSALELFKEMEESGSCP 945
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
VE A ++L ++ G P+V +Y ++ G CK + +E + LL
Sbjct: 1104 VERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLE---------------- 1147
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
Q L +P +TFN +I A+C ++ A L L+ E G P+ +++ L+ L
Sbjct: 1148 --QMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 1203
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM----EL 145
T S + G++ AYE+ + GLK + +I+ G C G+ ++A+ E+
Sbjct: 163 TYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM 222
Query: 146 LNEAIERGVTQNVVT-----------LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIH 193
VT N + I+LL+ + + G P ++N V+ C ++
Sbjct: 223 SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVE 282
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIK---KLDQ 223
AL LL M G P S+ +I KLDQ
Sbjct: 283 NALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQ 315
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA + + D+F + G ++ +N L+ L +N +VE+A
Sbjct: 591 CKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKIN----------------KVEQA 634
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
EML ++ PD TYT +++G C R EA +L E ++G + +T LL+
Sbjct: 635 AEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRA 694
Query: 168 LE 169
L+
Sbjct: 695 LQ 696
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG ++ A E++ + G +P+ TY IM FC+ A ++L I+ G
Sbjct: 348 VGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCP----- 402
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P I ++ +I C GK+ +A LL M G P LI
Sbjct: 403 -------------PDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDA 449
Query: 221 L 221
L
Sbjct: 450 L 450
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 89/191 (46%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA L E + + + G + ++ +N ++ H +GR++EA
Sbjct: 266 CKAGKLDEATALLQRMTRSGCSPNIVTYNTII----------------DGHCKLGRIDEA 309
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
Y +L + + G +P+V TYT ++D FCK G++ +A+ L+ +E+G N+ T LL
Sbjct: 310 YHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDM 369
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
++ G +P +++N VI LC K+H+ +LLL M + +P
Sbjct: 370 FCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPD 429
Query: 211 RTSHDMLIKKL 221
+ + +I +
Sbjct: 430 IVTFNTIIDAM 440
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 23/183 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---NHLMVGRVEEAYEMLMNVK 115
I +S+ K G V D L+ A+V V + S G+++EA +L +
Sbjct: 226 IVDSLVKSG---KVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMT 282
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR-------- 167
G P++ TY I+DG CK+GR +EA LL E ++ G NVVT LL
Sbjct: 283 RSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAE 342
Query: 168 ---------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+E G++P T+N+++ C ++ +A LL M + G +P+ S++ +I
Sbjct: 343 DAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVI 402
Query: 219 KKL 221
L
Sbjct: 403 AGL 405
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 38/194 (19%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P S+ ++ + K+ L + I + + +G +V +N +L N + A+
Sbjct: 42 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101
Query: 95 FSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
+M G +V+EA ++ + G +P+V TY ++DGFC+
Sbjct: 102 LEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR 161
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
VG + A+EL+ + ER G+ P IT+NN++ LC K+ A
Sbjct: 162 VGDLDGAVELVRKMTER------------------GYRPNAITYNNIMHGLCSGRKLDSA 203
Query: 196 LLLLFLMYEHGKIP 209
L L M E G P
Sbjct: 204 LQLFKEMEESGSCP 217
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
R+++A +L + ++G P+V++Y ++ GFCK R A+ LL + + RG +VV
Sbjct: 59 RLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYT 118
Query: 160 TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
T+I L +L+ G P IT+ ++ C VG + A+ L+ M E
Sbjct: 119 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 178
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ +++ ++ L
Sbjct: 179 GYRPNAITYNNIMHGL 194
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 33/201 (16%)
Query: 36 PRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P + VD + L +++ + + G + +N+++ L + D+A++
Sbjct: 147 PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQL 206
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
F +EE+ PDV+TY+ I+D K G+ ++A L+ + +G
Sbjct: 207 FK------EMEES---------GSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGC 251
Query: 155 TQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALL 197
+ NVVT LLQR+ G P +T+N +I C +G+I +A
Sbjct: 252 SPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYH 311
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
LL M + G P+ ++ +L+
Sbjct: 312 LLEEMVDGGCQPNVVTYTVLL 332
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 36/194 (18%)
Query: 64 KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR-------------------V 104
+K G + + +N ++ L D A K F L G +
Sbjct: 493 RKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFM 552
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---L 161
+EA +L + +G P TY ++DGFCK G ++A+E+L + +G +VVT
Sbjct: 553 DEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIF 612
Query: 162 IQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
I L + L G +P T+T+N +++ C + A+ L +M + G
Sbjct: 613 IDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGC 672
Query: 208 IPSRTSHDMLIKKL 221
P ++ L+ L
Sbjct: 673 EPDNATYTTLVGHL 686
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V E +L + ++ PD+ T+ I+D CK R + A EL N E G T N+VT
Sbjct: 410 KVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYN 469
Query: 163 QLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L + G P IT+N VI LC ++ +A L M
Sbjct: 470 SLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS 529
Query: 205 HGKIPSRTSHDMLIKKL 221
G P ++ ++I L
Sbjct: 530 DGLAPDDVTYSIVISSL 546
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 36/190 (18%)
Query: 56 RIDI----FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111
R+DI FN I++ G ++ +N L+ L D A Y +
Sbjct: 445 RVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQA---------------EYLLR 489
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR- 167
+ G PD+ TY ++DG CK R + A +L + + G+ + VT +I L +
Sbjct: 490 EMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKW 549
Query: 168 -------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
L+ G P IT+ +I C G + KAL +L L+ G P +
Sbjct: 550 RFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTF 609
Query: 215 DMLIKKLDQQ 224
+ I L ++
Sbjct: 610 SIFIDWLSKR 619
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
VE A ++L ++ G P+V +Y ++ G CK + +E + LL
Sbjct: 376 VERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLE---------------- 419
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
Q L +P +TFN +I A+C ++ A L L+ E G P+ +++ L+ L
Sbjct: 420 --QMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGL 475
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQL 164
PD TY +++G K R ++A+ LL E ++ G NV + + L
Sbjct: 42 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101
Query: 165 LQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L+++ M G P +++ VI LC + ++ +A ++ M + G P+ ++ L+
Sbjct: 102 LEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 156
>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ +EM ++ DG+ P++YTY +M+ CK GR+ +A +L +E ERGV+ N+VT
Sbjct: 247 GIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTY 306
Query: 162 IQLLQRL--EM---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P IT+N +I CGVGK+ KAL L +
Sbjct: 307 NTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS 366
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 367 RGLSPSLVTYNILV 380
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 35/212 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------- 100
+++ L I FN + G + FN+LL +V + + +FF+ +
Sbjct: 105 VQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESKIKVDLDVY 164
Query: 101 -----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G +E+++++L+ ++ G P+V YT ++DG CK G +A +L E
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEM 224
Query: 150 IERGVTQNVVTLIQLL----------QRLEM-------GHIPRTITFNNVIQALCGVGKI 192
+ G+ N T L+ Q EM G P T+N V+ C G+
Sbjct: 225 GKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRT 284
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M E G + +++ LI L ++
Sbjct: 285 KDAFKLFDEMRERGVSCNIVTYNTLIGGLCRE 316
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ + +K DG N ++ +N L+ VG++ +A + ++K+ G
Sbjct: 325 VMDQMKSDGINPNLITYNTLIDGFCG----------------VGKLGKALSLCRDLKSRG 368
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQRL------- 168
L P + TY ++ GFCK G ++ A +++ E ERG+ + +T LI R+
Sbjct: 369 LSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAI 428
Query: 169 -------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
E+G P T++ +I C G++++A L LM P++ ++ ++
Sbjct: 429 QLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMV 485
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA +ML + G++P VYTYT + C G S+EA+ELL + +RG N+ T
Sbjct: 286 GRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTF 345
Query: 162 IQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L G +P T+T+N +I LC G+ A + M
Sbjct: 346 TALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLS 405
Query: 205 HGKIPSRTSHDMLIK 219
HG +PS +++ +IK
Sbjct: 406 HGSLPSTQTYNEIIK 420
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----- 161
A+ M + DG P+ TY+ +++G C GR EAM++L E +++G+ V T
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLV 315
Query: 162 -----------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
++LL ++ + G +P TF +I L GK A+ L M G +P
Sbjct: 316 SLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVP 375
Query: 210 SRTSHDMLIKKL 221
+ +++ LI +L
Sbjct: 376 TTVTYNALINQL 387
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 34/171 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+++ + IF+ + K G++ +V +N L+ + G + A +L
Sbjct: 428 IQKAMVIFDKMLKAGSSPNVITYNTLIYG----------------YCKQGNLNNAMRLLE 471
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+K +GLKPD +TYT ++ GF + G+ A L +E G++
Sbjct: 472 IMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGIS----------------- 514
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P +T+ +I + K+ AL L + M E G +PS +++++I +
Sbjct: 515 -PNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK 564
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
+ EA + GL P+V TYT+ +DG C+ GR+ A ++ +E +R N+ T
Sbjct: 568 ISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSS 627
Query: 161 ---------------LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ LL RL G P T+ +++ LCG G+ ++A L+ M +
Sbjct: 628 LIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQK 687
Query: 205 HGKIPSRTSHDMLI 218
G PS + L+
Sbjct: 688 KGLQPSEEIYRALL 701
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 36/210 (17%)
Query: 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------- 96
V A E +++ +KK G ++ F L+ L + + A+ +
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374
Query: 97 ----------NHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
N L V GR E A+ + + + G P TY I+ FC +G +AM +
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434
Query: 146 LNEAIERGVTQNVVTLIQL-------------LQRLEM----GHIPRTITFNNVIQALCG 188
++ ++ G + NV+T L ++ LE+ G P T+ +I
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
GK+ A L + M EHG P+ ++ +I
Sbjct: 495 GGKLEHATSLFYGMMEHGISPNHVTYTAII 524
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG---VTQNV 158
G++E A + + G+ P+ TYTAI+DG+ + + ++A+ L + +E G +Q
Sbjct: 496 GKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTY 555
Query: 159 VTLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+I + ++ G +P IT+ + I LC G+ A + M +
Sbjct: 556 NVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEK 615
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P+ ++ LI L Q+
Sbjct: 616 RNYFPNLYTYSSLIYGLCQE 635
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+ A +M + + N G++P + T+ +++ CK GR EA +++ N T
Sbjct: 183 VDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTS 242
Query: 164 LL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ + ++ G P ++T++ +I LC G++ +A+ +L M + G
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG 302
Query: 207 KIPS 210
P+
Sbjct: 303 IEPT 306
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 19/151 (12%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + +V++A + + G P TY ++ GF K +EA +
Sbjct: 519 TYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKM 578
Query: 150 IERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKI 192
+++G+ NV+T + L EM + P T++++I LC G+
Sbjct: 579 VKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRA 638
Query: 193 HKALL--LLFLMYEHGKIPSRTSHDMLIKKL 221
A + LL + +G P+ ++ L+K L
Sbjct: 639 EDAEMYNLLARLTHYGCEPNVDTYTTLVKGL 669
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ +EM ++ DG+ P++YTY +M+ CK GR+ +A ++ +E ERGV+ N+VT
Sbjct: 247 GVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTY 306
Query: 162 IQLLQRL--EM---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P IT+N +I CGVGK+ KAL L +
Sbjct: 307 NTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS 366
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 367 RGLSPSLVTYNILV 380
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 36/201 (17%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVM---LNEQDTAV----------------KF 94
K+ +F+ +++ G + ++ +N L+ L LNE + V
Sbjct: 285 KDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTL 344
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
VG++ +A + ++K+ GL P + TY ++ GFC+ G ++ A +++ E ERG+
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGI 404
Query: 155 TQNVVTL----------------IQL-LQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
+ VT IQL L E+G +P T++ +I C G++++A
Sbjct: 405 KPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASR 464
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
L M E P+ ++ +I
Sbjct: 465 LFKSMVEKNCEPNEVIYNTMI 485
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 35/212 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV----------MLNEQDTAV--KFF 95
+++ L I FN + +G + FN LL +V NE + V +
Sbjct: 105 VQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVY 164
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
S +++ G +E+++++L+ + G P+V YT ++DG CK G +A +L E
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
Query: 150 IERGVTQNVVTLIQLL----------QRLEM-------GHIPRTITFNNVIQALCGVGKI 192
+ G+ N T L+ Q EM G P T+N V+ LC G+
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRT 284
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A + M E G + +++ LI L ++
Sbjct: 285 KDAFQVFDEMRERGVSCNIVTYNTLIGGLCRE 316
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA +ML + G++P VYTYT + C G S+EA+ELL + +RG N+ T
Sbjct: 286 GRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTF 345
Query: 162 IQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L G +P T+T+N +I LC G+ A + M
Sbjct: 346 TALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLS 405
Query: 205 HGKIPSRTSHDMLIK 219
HG +PS +++ +IK
Sbjct: 406 HGSLPSTQTYNEIIK 420
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----- 161
A+ M + DG P+ TY+ +++G C GR EAM++L E +++G+ V T
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLV 315
Query: 162 -----------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
++LL ++ + G +P TF +I L GK A+ L M G +P
Sbjct: 316 SLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVP 375
Query: 210 SRTSHDMLIKKL 221
+ +++ LI +L
Sbjct: 376 TTVTYNALINQL 387
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 34/171 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+++ + IF+ + K G++ +V +N L+ + G + A +L
Sbjct: 428 IQKAMVIFDKMLKAGSSPNVITYNTLIYG----------------YCKQGNLNNAMRLLE 471
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+K +GLKPD +TYT ++ GF + G+ A L +E G++
Sbjct: 472 IMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGIS----------------- 514
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P +T+ +I + K+ AL L + M E G +PS +++++I +
Sbjct: 515 -PNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSK 564
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
+ EA + GL P+V TYT+ +DG C+ GR+ A ++ +E +R N+ T
Sbjct: 568 ISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSS 627
Query: 161 ---------------LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ LL RL G P T+ +++ LCG G+ ++A L+ M +
Sbjct: 628 LIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQK 687
Query: 205 HGKIPSRTSHDMLI 218
G PS + L+
Sbjct: 688 KGLQPSEEIYRALL 701
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 36/210 (17%)
Query: 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------- 96
V A E +++ +KK G ++ F L+ L + + A+ +
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374
Query: 97 ----------NHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
N L V GR E A+ + + + G P TY I+ FC +G +AM +
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434
Query: 146 LNEAIERGVTQNVVTLIQL-------------LQRLEM----GHIPRTITFNNVIQALCG 188
++ ++ G + NV+T L ++ LE+ G P T+ +I
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
GK+ A L + M EHG P+ ++ +I
Sbjct: 495 GGKLEHATSLFYGMMEHGISPNHVTYTAII 524
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG---VTQNV 158
G++E A + + G+ P+ TYTAI+DG+ + + ++A+ L + +E G +Q
Sbjct: 496 GKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTY 555
Query: 159 VTLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+I + ++ G +P IT+ + I LC G+ A + M +
Sbjct: 556 NVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEK 615
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P+ ++ LI L Q+
Sbjct: 616 RNYFPNLYTYSSLIYGLCQE 635
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+ A +M + + N G++P + T+ +++ CK GR EA +++ N T
Sbjct: 183 VDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTS 242
Query: 164 LL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ + ++ G P ++T++ +I LC G++ +A+ +L M + G
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG 302
Query: 207 KIPSRTSHDM 216
P+ ++ +
Sbjct: 303 IEPTVYTYTI 312
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 19/151 (12%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + +V++A + + G P TY ++ GF K +EA +
Sbjct: 519 TYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKM 578
Query: 150 IERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKI 192
+++G+ NV+T + L EM + P T++++I LC G+
Sbjct: 579 VKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRA 638
Query: 193 HKALL--LLFLMYEHGKIPSRTSHDMLIKKL 221
A + LL + +G P+ ++ L+K L
Sbjct: 639 EDAEMYNLLARLTHYGCEPNVDTYTTLVKGL 669
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E I N + + G + SV +N F H ++ R+EEA ++
Sbjct: 405 LNEAYRILNEMTESGFSPSVVTYN----------------AFIHGHCVLERMEEALGVVQ 448
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------ 166
+ GL PDV +Y+ I+ GFC+ G + A ++ E +E+GV+ + VT L+Q
Sbjct: 449 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMR 508
Query: 167 -----------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
L+MG P T+ +I A C G ++KAL L M G +P ++
Sbjct: 509 RLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYS 568
Query: 216 MLIKKLDQQ 224
+LI L++Q
Sbjct: 569 VLINGLNKQ 577
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 34/169 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L++ + F ++++G +V +N L+ A + +GR++EA+ +L
Sbjct: 230 LQKGLGCFGEMERNGCLPNVVTYNTLIDA----------------YCKMGRIDEAFGLLK 273
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
++ + G++P++ +Y I++G C+ G EA E+L E +G T
Sbjct: 274 SMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFT----------------- 316
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N ++ C G H+AL++ M +G PS ++ LI +
Sbjct: 317 -PDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSM 364
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 32/172 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ + ++ N K G V +N +L A+V +VK EE Y ++
Sbjct: 158 IDQAVNTINLAKSSGFMPGVLSYNSVLDAIV---RSRGSVKL--------SAEEVYREMI 206
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+ + P+VYTY ++ GFC VG + + E +ER G
Sbjct: 207 RSR---VSPNVYTYNILIRGFCSVGELQKGLGCFGE-MERN-----------------GC 245
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+P +T+N +I A C +G+I +A LL M G P+ S++++I L ++
Sbjct: 246 LPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCRE 297
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---V 158
G +A + + +G+ P V TYTA+++ CK N AME ++ RG+ N
Sbjct: 333 GNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTY 392
Query: 159 VTLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI R E G P +T+N I C + ++ +AL ++ M E
Sbjct: 393 TTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE 452
Query: 205 HGKIPSRTSHDMLI 218
G P S+ +I
Sbjct: 453 KGLAPDVVSYSTII 466
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 32/167 (19%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL--- 146
T + + + G + +A + + + G PD TY+ +++G K R+ EA LL
Sbjct: 531 TYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKL 590
Query: 147 --NEAIERGVT-------------QNVVTLIQ--------------LLQRLEMGHIPRTI 177
E++ VT ++VV LI+ +E H P
Sbjct: 591 IYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEA 650
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+N +I C G + KA L M G +P + LIK L ++
Sbjct: 651 VYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKE 697
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
E + V M G + EA + ++ KP Y I+ G C+ G +A L
Sbjct: 613 EFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLY 672
Query: 147 NEAIERGVTQNVVTLIQLLQRL 168
E I G + VT+I L++ L
Sbjct: 673 KEMIHSGFVPHTVTVITLIKAL 694
>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 680
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
LK+ I +FN + + N V FN L+ A GRV+EA L
Sbjct: 261 LKDAIGLFNKMTSENINPDVYTFNILVDAFCK----------------EGRVKEAKNGLA 304
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV------------VT 160
+ G+KPD+ TY ++MDG+C V N A +LN RGVT V +
Sbjct: 305 MMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIK 364
Query: 161 LIQLLQRL--EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
++ +L EM H P IT+N++I LC G+I AL L+ LM++ G+ P ++
Sbjct: 365 MVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYS 424
Query: 216 MLIKKL 221
++ L
Sbjct: 425 SILDAL 430
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 22/125 (17%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
NHL V++A +L+ +K+ G++P++YTYT ++DG CK GR +A + + + +G
Sbjct: 433 NHL----VDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNL 488
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
V T+ +IQ C G +AL LL M ++ IP ++++
Sbjct: 489 TVN------------------TYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEI 530
Query: 217 LIKKL 221
+I L
Sbjct: 531 IICSL 535
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
+F+D L+AL +Q + + VG A E+L V ++ DV Y+ I+D
Sbjct: 161 NFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSM 220
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMGHI-PRT 176
CK N+A +L +E + R ++ N+VT I L ++ +I P
Sbjct: 221 CKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDV 280
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN ++ A C G++ +A L +M + G P +++ L+
Sbjct: 281 YTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLM 322
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 34/163 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
I N++ G +V +N ++ + D A+K F EM +
Sbjct: 337 ILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFK------------EM----HHKQ 380
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
+ P+V TY +++DG CK GR + A+EL++ +R G P IT
Sbjct: 381 IFPNVITYNSLIDGLCKSGRISYALELIDLMHDR------------------GQQPDIIT 422
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+++++ ALC + KA+ LL + + G P+ ++ +LI L
Sbjct: 423 YSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGL 465
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 18/79 (22%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G+KP+ + +++ FC++G A +L + L+MG+ P TI
Sbjct: 100 GIKPNFVNFNILINCFCQLGLIPFAFSVLAKI------------------LKMGYEPDTI 141
Query: 178 TFNNVIQALCGVGKIHKAL 196
T N I+ C G+IH+AL
Sbjct: 142 TLNTFIKGFCLKGQIHQAL 160
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA ++ + + GLKPD TYTA++DG+CK G EA L N+ +E+G+T NVVT
Sbjct: 406 GKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTY 465
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G P T+N +I LC VG I +A+ L+ M
Sbjct: 466 TALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDL 525
Query: 205 HGKIPSRTSHDMLI 218
G P ++ ++
Sbjct: 526 AGFFPDTITYTTIM 539
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 17/146 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + G ++EA+ + + GL P+V TYTA++DG CK G + A ELL+E
Sbjct: 429 TYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM 488
Query: 150 IERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
E+G+ NV T ++L++ +++ G P TIT+ ++ A C +G++
Sbjct: 489 SEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEM 548
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
KA LL +M + G P+ + ++L+
Sbjct: 549 AKAHELLRIMLDKGLQPTIVTFNVLM 574
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V Y++ +K + PD TYT+++ G C+ G+ EA +L +E + +G+ + VT
Sbjct: 371 GNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTY 430
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q +E G P +T+ ++ LC G++ A LL M E
Sbjct: 431 TALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSE 490
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ LI L
Sbjct: 491 KGLQPNVCTYNALINGL 507
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 34/160 (21%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F + G W+ +N +L L L G+V+EA+ +L+ ++ G
Sbjct: 239 VFREYSEVGVCWNTVSYNIILHLLCQL----------------GKVKEAHSLLIQMEFRG 282
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
PDV +Y+ I+DG+C+V + + ++L+ E +G+ P T
Sbjct: 283 NVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLK------------------PNQYT 324
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+N++I LC G++ +A +L +M P + LI
Sbjct: 325 YNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLI 364
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 36/198 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK---------FFSN----------H 98
++ + + + G +V +N L+ L + + AVK FF + +
Sbjct: 483 ELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAY 542
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+G + +A+E+L + + GL+P + T+ +M+GFC G + L+ +++G+ N
Sbjct: 543 CKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNA 602
Query: 159 VTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
T L+++ + G +P T T+N +I+ C + +A L
Sbjct: 603 TTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKE 662
Query: 202 MYEHGKIPSRTSHDMLIK 219
M E G + S++ LIK
Sbjct: 663 MVEKGFSLTAASYNSLIK 680
>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 408
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 18/170 (10%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
LK+ I +FN +K + FN L+ A G V E ++
Sbjct: 205 LKDAIGLFNDMKLENVEADEYTFNTLVSAFCK----------------EGNVREGKAVVA 248
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+ +G+KPD+ TY ++MDG+C V ++A + N ++RGVT NV T+ L Q +
Sbjct: 249 VMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRGVTANVRTM-NLFQEMHCKE 307
Query: 173 -IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IP TI ++++I C G+I +AL L+ M++ G+ P+ +++ ++ L
Sbjct: 308 IIPDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILYAL 357
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 24/126 (19%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A+++ + + PDV+TY A++ GFC VGR +A+ L N+
Sbjct: 170 VDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFND--------------M 215
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD------ML 217
L+ +E TFN ++ A C G + + ++ +M + G P +++ L
Sbjct: 216 KLENVEADE----YTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCL 271
Query: 218 IKKLDQ 223
+K++D+
Sbjct: 272 VKEVDK 277
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 77/200 (38%), Gaps = 28/200 (14%)
Query: 23 SPSAAESLDLKENPRSLQAQRFVDKIKASPLKER-IDIFNSIKKDGTNWSVSDFNDLLMA 81
+P+ S +P ++ Q +P E I FN + +S F +L +
Sbjct: 18 NPNFIHSFRFSSSPSTIYTQ-----FNNNPHHENLISRFNRLTNQIPTPPISQFGRILAS 72
Query: 82 LVMLNEQDTAVKFFSNHLMVGRVEE--AYEMLMNVKNDGLKP---DVYTYTAIMDGFCKV 136
L + N A+ F G + Y +L+N + D +Y +++G CKV
Sbjct: 73 LALSNRYSIALSFHQKLHFKGIKPDLFTYNVLINCFSQLGHTHFLDRVSYETLINGLCKV 132
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI-----------------PRTITF 179
G + A+ LL E E+ V +VV ++ L + P T+
Sbjct: 133 GETRAALRLLKEVNEKIVQYDVVMYTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTY 192
Query: 180 NNVIQALCGVGKIHKALLLL 199
N +I C VG++ A+ L
Sbjct: 193 NAMIYGFCVVGRLKDAIGLF 212
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D K+ + + +++ + + G ++ +N +L AL ++
Sbjct: 310 PDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILYALCKIHH------- 362
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
VE+ +L +K G++PD YTYT + +G K GR EA E+
Sbjct: 363 ---------VEKTIALLRKIKVKGIQPDAYTYTILTNGLFKDGRLEEAREIF 405
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+ + E +++F +K+DG V + L+ A + ++ A+KFF EE
Sbjct: 271 CEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFF---------EEM 321
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------ 161
E +G++P+VYTYT ++D FCKVG+ +E ME+L+ +E+G+ +VV
Sbjct: 322 VE-------NGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDG 374
Query: 162 ----------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
I +L +++ + P + T+N +I C + +A+ LL MYE+ P+
Sbjct: 375 YCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPN 434
Query: 211 RTSHDMLIKKL 221
+++ LI L
Sbjct: 435 LVTYNTLIHGL 445
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 79 LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
LM + T + + + +AY++ + +G + +YT ++ GFC+VG+
Sbjct: 216 LMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGK 275
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNN 181
+EA+EL + E G +V T L+ + +E G P T+
Sbjct: 276 IDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTV 335
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+I C VGK+ + + +L M E G + S + LI
Sbjct: 336 LIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALI 372
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 18/135 (13%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+Q T F +G+VE+A+++ ++K + + + YTA++DG+CK + ++A L
Sbjct: 469 DQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLF 528
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+ G P +ITFN ++ L GK+ A+ L+ +M +
Sbjct: 529 KRMLFEGC------------------FPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFD 570
Query: 207 KIPSRTSHDMLIKKL 221
P+ ++ +LI+++
Sbjct: 571 AKPTVHTYTILIEEI 585
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ N + + SV+ +N L M L G ++E + ++ NDG
Sbjct: 142 VLNLLTHHEFSLSVTSYNRLFMVLSRF----------------GLIDELNCLFKDMLNDG 185
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++P++ ++ +++ CK+G A ++ G + T L+
Sbjct: 186 VEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAY 245
Query: 166 QRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ E+ G + +++ N+I C VGKI +AL L F M E G P ++ +L+
Sbjct: 246 KVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLV 302
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 33/165 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K + E +++ +++ + G SV FN L+ + G +E+A
Sbjct: 341 CKVGKMDEGMEMLSTMLEKGLVSSVVPFNALI----------------DGYCKRGMMEDA 384
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+L ++K + + P+ TY ++ GFC+ + AM LLN+ E ++ N+VT L+
Sbjct: 385 ICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHG 444
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
L + G +P TF I LC +GK+ +A
Sbjct: 445 LCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQA 489
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+A ++ + KP V+TYT +++ + + A L++ I G NVVT
Sbjct: 554 GKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTY 613
Query: 162 I----------QLLQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+LL+ EM G + + ++ ++ A +G++ A +L M++
Sbjct: 614 TAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFD 673
Query: 205 HGKIPSRTSHDMLIKKL 221
G PSR ++ +L+K L
Sbjct: 674 TGCEPSRQTYSILLKHL 690
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 43/172 (25%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F + GR+ EA EM++ +K +G+ D + Y +++ + +G+ + A +L
Sbjct: 612 TYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRM 671
Query: 150 IERGVTQNVVTLIQLLQRL----------------------------------------- 168
+ G + T LL+ L
Sbjct: 672 FDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEK 731
Query: 169 --EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
E G +P T++ +I+ LC V + A L M E G PS H+ L+
Sbjct: 732 MVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLL 783
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 62 SIKKDGTN-WSVSDFNDLLMALVMLNEQ------DTAVKFFSNHLMVGRVEEAYEMLMNV 114
+I D N W ++DF + M + EQ +T K V + A+ + ++
Sbjct: 708 NISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHM 767
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
K G+ P + +++ CK+G EA+ LL+ +E
Sbjct: 768 KESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMME 804
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E I N + + G + SV +N F H ++ R+EEA ++
Sbjct: 201 LNEAYRILNEMTESGFSPSVVTYN----------------AFIHGHCVLERMEEALGVVQ 244
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR----- 167
+ GL PDV +Y+ I+ GFC+ G + A ++ E +E+GV+ + VT L+Q
Sbjct: 245 EMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMR 304
Query: 168 ------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
L+MG P T+ +I A C G ++KAL L M G +P ++
Sbjct: 305 RLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYS 364
Query: 216 MLIKKLDQQ 224
+LI L++Q
Sbjct: 365 VLINGLNKQ 373
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 34/169 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L++ + F ++++G +V +N L+ A + +GR++EA+ +L
Sbjct: 26 LQKGLGCFGEMERNGCLPNVVTYNTLIDA----------------YCKMGRIDEAFGLLK 69
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
++ + G++P++ +Y I++G C+ G EA E+L E +G T
Sbjct: 70 SMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFT----------------- 112
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N ++ C G H+AL++ M +G PS ++ LI +
Sbjct: 113 -PDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSM 160
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
+ P+VYTY ++ GFC VG + + E +ER G +P +T
Sbjct: 6 VSPNVYTYNILIRGFCSVGELQKGLGCFGE-MERN-----------------GCLPNVVT 47
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+N +I A C +G+I +A LL M G P+ S++++I L ++
Sbjct: 48 YNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCRE 93
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---VVTLIQLLQR------ 167
+G+ P V TYTA+++ CK N AME ++ RG+ N TLI R
Sbjct: 144 NGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNE 203
Query: 168 --------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
E G P +T+N I C + ++ +AL ++ M E G P S+ +I
Sbjct: 204 AYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTII 262
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 32/164 (19%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL--- 146
T + + + G + +A + + + G PD TY+ +++G K R+ EA LL
Sbjct: 327 TYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKL 386
Query: 147 --NEAIERGVT-------------QNVVTLIQLL--------------QRLEMGHIPRTI 177
E++ VT ++VV LI+ +E H P
Sbjct: 387 IYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEA 446
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +I C G + KA L M G +P + LIK L
Sbjct: 447 VYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKAL 490
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E +D++ + +DG +V +N L+ L SN G +EEA ++
Sbjct: 330 LYEALDLWKLMIQDGCEPNVVAYNTLIHGLC------------SN----GSLEEALQVCD 373
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQRLE 169
++ G P+V TY+ ++DGF K G A E N I G NVVT ++ +L +
Sbjct: 374 QMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNS 433
Query: 170 M--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
M G P TITFN I+ LCG G++ A+ LL M HG +P+ T+++
Sbjct: 434 MFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYN 493
Query: 216 MLIKKL 221
L+ L
Sbjct: 494 ELLDAL 499
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 41/199 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNHL 99
++ ++KKDG +V +N LL AL + D A K F S+
Sbjct: 166 LYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLC 225
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G++++A E+ KP V Y A++DG CK GR A++LL E ++ GV NVV
Sbjct: 226 KAGKIDDARELA-----GRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVV 280
Query: 160 TLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ ++ L + G TF +I+ GK+++AL L LM
Sbjct: 281 SYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLM 340
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ G P+ +++ LI L
Sbjct: 341 IQDGCEPNVVAYNTLIHGL 359
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 34/129 (26%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
+++ +N+LL AL +N + EEA+ + ++ L+P++ TY ++
Sbjct: 488 NITTYNELLDALFRMN----------------KYEEAFGLFQEIEARNLQPNLVTYNTVL 531
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190
GF + G EA++L +A+ RG P +IT+N +I A C G
Sbjct: 532 YGFSRAGMMGEALQLFGKALVRGTA------------------PDSITYNTMIHAYCKQG 573
Query: 191 KIHKALLLL 199
K+ A L+
Sbjct: 574 KVKIAAQLV 582
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 70/181 (38%), Gaps = 47/181 (25%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLM----------------------------------- 112
+D + + + VG E+A +M
Sbjct: 109 EDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYT 168
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMG 171
N+K DGL P+V+TY ++ CK R + A +L E +G + VT ++ L + G
Sbjct: 169 NMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAG 228
Query: 172 HI-----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
I P +N +I +C G+I A+ LL M ++G P+ S+ +I
Sbjct: 229 KIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINS 288
Query: 221 L 221
L
Sbjct: 289 L 289
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 102 GRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+V+ A +++ V + PD+ TYT+++ G C EAM L++AI +G+ N T
Sbjct: 573 GKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFAT 632
Query: 161 LIQLLQRL--EMGHI 173
L++ +GH+
Sbjct: 633 WNALVRCFFDSLGHM 647
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 26/157 (16%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEM------LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141
Q TA + +M+ R+ EM L +K DG+ + I++G+ +VG + +
Sbjct: 71 QHTASTY---RVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQ 127
Query: 142 AMELLNEAIERGVTQNVVTLIQLL------QRLEM-----------GHIPRTITFNNVIQ 184
A+++ E G V LL + +M G IP T+N +++
Sbjct: 128 ALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLK 187
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
ALC ++ A L M G P ++ ++ L
Sbjct: 188 ALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSL 224
>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+ L++ +++ N +K G +WS+ + L+ A G+++EA
Sbjct: 188 CEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCK----------------AGKMDEA 231
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ- 166
L +K GL+ D+ YT+++ GFC G + L +E +ERG + +T L++
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRG 291
Query: 167 ----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+E G P T+ +I LCGVGK +AL LL LM E + P+
Sbjct: 292 FCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPN 351
Query: 211 RTSHDMLIKKL 221
+++++I KL
Sbjct: 352 AVTYNIIINKL 362
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 23/145 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-------- 152
+G+++EA E+ + G++P+VYTYT ++DG C VG++ EA++LLN IE+
Sbjct: 295 LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVT 354
Query: 153 -----------GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
G+ + V +++L+++ P IT+N ++ LC G + +A LL+L
Sbjct: 355 YNIIINKLCKDGLVADAVEIVELMKKRRTR--PDNITYNILLGGLCAKGDLDEASKLLYL 412
Query: 202 MYEHGKI--PSRTSHDMLIKKLDQQ 224
M + P S++ LI L ++
Sbjct: 413 MLKDSSYTDPDVISYNALIHGLCKE 437
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL---- 161
+A +L ++ + L PDV++Y ++ GFC+ +A+EL NE G + ++VT
Sbjct: 160 KAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILI 219
Query: 162 ------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L+ ++ MG + + ++I+ C G++ + L + E G
Sbjct: 220 DAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDS 279
Query: 209 PSRTSHDMLIK 219
P +++ LI+
Sbjct: 280 PCAITYNTLIR 290
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
D DLL+ + ++ T ++ L G V +A E+ + + + + TYTA++DGF
Sbjct: 445 DIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193
CK G N A LL + V+ +Q P +N ++ +LC G +
Sbjct: 505 CKTGMLNVAKGLL--------CKMRVSELQ----------PSVFDYNCLLSSLCKEGSLD 546
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLI 218
+A L M P S +++I
Sbjct: 547 QAWRLFEEMQRDNNFPDVVSFNIMI 571
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 19/102 (18%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFS-------------------NHLMVGRVEEAYEML 111
SV D+N LL +L D A + F L G ++ A +L
Sbjct: 528 SVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLL 587
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + GL PD++TY+ +++ F K+G +EA+ ++ ++ G
Sbjct: 588 VGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSG 629
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 32/209 (15%)
Query: 34 ENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV 92
E P ++ ++K+ K + + ++I +KK T +N LL L + D A
Sbjct: 348 EEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEAS 407
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
K +LM+ + +Y PDV +Y A++ G CK R ++A+++ + +E+
Sbjct: 408 KLL--YLMLK--DSSYT----------DPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453
Query: 153 -GVTQNVVTLIQLLQRLEMGHIPRTI----------------TFNNVIQALCGVGKIHKA 195
G V T I L L+ G + + + T+ +I C G ++ A
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LL M PS ++ L+ L ++
Sbjct: 514 KGLLCKMRVSELQPSVFDYNCLLSSLCKE 542
>gi|195650415|gb|ACG44675.1| hypothetical protein [Zea mays]
Length = 558
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
+A+ +D++ A + + F+++ K G + D ++ L T
Sbjct: 195 EAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMLGLGCEPTIRTYNSLV 254
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
VGR+EEA E+L +K+ L PD+YT+T ++DGFCKVGR+ EA + ++AI
Sbjct: 255 GGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAIFHDAI----- 309
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY---EHGKIPSRT 212
MG P T T+N ++ C G KA LL M + +P +T
Sbjct: 310 -------------GMGLSPTTFTYNALLNGXCKEGNPLKAFALLMEMCGNNDAACLPDKT 356
Query: 213 SHDMLIKKL 221
S +++ L
Sbjct: 357 SFGIVLTAL 365
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 34/175 (19%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM 100
A+ +I P++ER+ + + +++D +VSD+ND+L AL + TAV F +
Sbjct: 114 ARDCAKRIMELPVEERVKVLDLLQRDDAALTVSDYNDILSALARAGDHATAVALFRAMPV 173
Query: 101 V----------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
G +EA L + G +P V T++A++ CK GR +AME
Sbjct: 174 APDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAME 233
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+L+ L +G P T+N+++ LC VG++ +AL LL
Sbjct: 234 VLD------------------AMLGLGCEPTIRTYNSLVGGLCYVGRLEEALELL 270
>gi|125586172|gb|EAZ26836.1| hypothetical protein OsJ_10752 [Oryza sativa Japonica Group]
Length = 523
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 33/178 (18%)
Query: 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE 106
+I P++ER+ + + +++D +VSD+ND+L AL M + D+AV F
Sbjct: 103 RIMGLPVEERVKVLDLLQRDDGALTVSDYNDILSALAMAGDHDSAVALFR---------- 152
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
++ +G+ PD +Y + C+ G +EA E L+E + RG V T ++
Sbjct: 153 ------ALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVG 206
Query: 167 RL-EMGHIPRTI----------------TFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L + G + R + T+N++I LC VG++ +AL LL + E K
Sbjct: 207 CLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPK 264
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 36/167 (21%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+++F++++ G ++ +N L+ L VGR+EEA ++L +K
Sbjct: 218 MEVFDTMRAVGCEPTIRTYNSLIGGLCY----------------VGRLEEALDLLNKLKE 261
Query: 117 DGLK-PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
+ PD+YT+T ++DGFCKVGR++EA + ++A+ G++ P
Sbjct: 262 SPKQTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLS------------------PT 303
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTSHDMLIKKL 221
T+N ++ C G KA LL M + P R S ++++ L
Sbjct: 304 IFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRISFSIVLQAL 350
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK-VGRSNEAMELLNEAIERG--VT 155
L G A++ ++ G + D + G C+ + A+ EA+ RG V
Sbjct: 351 LRAGETSAAWQAYKRMERAGFEADGRALDTLARGLCRQCAANVAALADAREALARGGEVD 410
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
V L ++ +R G+ R + +V++ALC G+ AL +L L+ +P R + D
Sbjct: 411 AAVSLLGEMARR---GYALRKRAYTDVVRALCERGRARDALRVLALVIARDFVPGRNAFD 467
Query: 216 MLIKKLDQQ 224
L+ +L +Q
Sbjct: 468 ALLGELARQ 476
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K ++ +F++I K G SV FN L+ + ++ +G ++E
Sbjct: 147 CKEGEMRRAQSVFDAITKWGLRPSVVSFNTLM----------------NGYIRLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + + G++PDVYTY+ +++G CK + +EA EL NE ++RG+ N VT L+
Sbjct: 191 FRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDV 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L G P IT+N +I LC G + + L+ M +G P
Sbjct: 251 HCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 21/119 (17%)
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
EM MN GLKPD TYT ++DG CK G A E I+ + + V L+
Sbjct: 301 EMSMN----GLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGL 356
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ L +G P T+ +I C G + A LL M G +P
Sbjct: 357 CQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPC 415
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR ++A +M + + GLKPD TYT I++ FCK G A LL E G VVT
Sbjct: 360 GRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418
>gi|115452873|ref|NP_001050037.1| Os03g0336000 [Oryza sativa Japonica Group]
gi|108708021|gb|ABF95816.1| expressed protein [Oryza sativa Japonica Group]
gi|113548508|dbj|BAF11951.1| Os03g0336000 [Oryza sativa Japonica Group]
gi|125543773|gb|EAY89912.1| hypothetical protein OsI_11461 [Oryza sativa Indica Group]
gi|215712300|dbj|BAG94427.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 545
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 33/178 (18%)
Query: 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE 106
+I P++ER+ + + +++D +VSD+ND+L AL M + D+AV F
Sbjct: 103 RIMGLPVEERVKVLDLLQRDDGALTVSDYNDILSALAMAGDHDSAVALFR---------- 152
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
++ +G+ PD +Y + C+ G +EA E L+E + RG V T ++
Sbjct: 153 ------ALRPNGVTPDAQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVG 206
Query: 167 RL-EMGHIPRTI----------------TFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L + G + R + T+N++I LC VG++ +AL LL + E K
Sbjct: 207 CLCKRGRVTRAMEVFDTMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPK 264
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 36/167 (21%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+++F++++ G ++ +N L+ L VGR+EEA ++L +K
Sbjct: 218 MEVFDTMRAVGCEPTIRTYNSLIGGLCY----------------VGRLEEALDLLNKLKE 261
Query: 117 DGLK-PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
+ PD+YT+T ++DGFCKVGR++EA + ++A+ G++ P
Sbjct: 262 SPKQTPDIYTFTIVLDGFCKVGRTDEATPIFHDAVRNGLS------------------PT 303
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTSHDMLIKKL 221
T+N ++ C G KA LL M + P R S ++++ L
Sbjct: 304 IFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRISFSIVLQAL 350
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + G +P YTY + + G + A+ LL E RG
Sbjct: 401 EVFGKLVASGHEPVSYTYCLMAQALARGGEVDAAVSLLGEMARRG--------------- 445
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ R + +V++ALC G+ AL +L L+ +P R + D L+ +L +Q
Sbjct: 446 ---YALRKRAYTDVVRALCERGRARDALRVLALVIARDFVPGRNAFDALLGELARQ 498
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E +D++ + +DG +V +N L+ L SN G +EEA ++
Sbjct: 330 LYEALDLWKLMIQDGCEPNVVAYNTLIHGLC------------SN----GSLEEALQVCD 373
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQRLE 169
++ G P+V TY+ ++DGF K G A E N I G NVVT ++ +L +
Sbjct: 374 QMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNS 433
Query: 170 M--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
M G P T+TFN I+ LCG G++ A+ LL M HG +P+ T+++
Sbjct: 434 MFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYN 493
Query: 216 MLIKKL 221
L+ L
Sbjct: 494 ELLDAL 499
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 41/199 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNHL 99
++ ++KKDG +V +N LL AL + D A K F S+
Sbjct: 166 LYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLC 225
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G++++A E+ KP V Y A++DG CK GR A++LL E ++ GV NVV
Sbjct: 226 KAGKIDDARELA-----GRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVV 280
Query: 160 TLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ ++ L + G TF +I+ GK+++AL L LM
Sbjct: 281 SYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLM 340
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ G P+ +++ LI L
Sbjct: 341 IQDGCEPNVVAYNTLIHGL 359
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 34/129 (26%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
+++ +N+LL AL +N + EEA+ + ++ L+P++ TY ++
Sbjct: 488 NITTYNELLDALFRMN----------------KYEEAFGLFQEIEARNLQPNLVTYNTVL 531
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190
GF + G EA++L +A+ RG P +IT+N +I A C G
Sbjct: 532 YGFSRAGMMGEALQLFGKALVRGTA------------------PDSITYNTMIHAYCKQG 573
Query: 191 KIHKALLLL 199
K+ A L+
Sbjct: 574 KVKIAAQLV 582
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 70/181 (38%), Gaps = 47/181 (25%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLM----------------------------------- 112
+D + + + VG E+A +M
Sbjct: 109 EDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYT 168
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMG 171
N+K DGL P+V+TY ++ CK R + A +L E +G + VT ++ L + G
Sbjct: 169 NMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAG 228
Query: 172 HI-----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
I P +N +I +C G+I A+ LL M ++G P+ S+ +I
Sbjct: 229 KIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINS 288
Query: 221 L 221
L
Sbjct: 289 L 289
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 102 GRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+V+ A +++ V + PD+ TYT+++ G C EAM L++AI +G+ N T
Sbjct: 573 GKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFAT 632
Query: 161 LIQLLQRL--EMGHI 173
L++ +GH+
Sbjct: 633 WNALVRCFFDSLGHM 647
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 26/157 (16%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEM------LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141
Q TA + +M+ R+ EM L +K DG+ + I++G+ +VG + +
Sbjct: 71 QHTASTY---RVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQ 127
Query: 142 AMELLNEAIERGVTQNVVTLIQLL------QRLEM-----------GHIPRTITFNNVIQ 184
A+++ E G V LL + +M G IP T+N +++
Sbjct: 128 ALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLK 187
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
ALC ++ A L M G P ++ ++ L
Sbjct: 188 ALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSL 224
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 36/203 (17%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-------------- 100
E +++ +K+ G ++ DFN +L AL +EQ+ A +FF L
Sbjct: 273 ECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAV 332
Query: 101 -----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
GRV+EAY +L+ + + PDV TY++I+DGFCK GR ++A ++ +
Sbjct: 333 HGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECI 392
Query: 156 QNVVTLIQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLL 198
+ VT + LL G IP T+N ++ +CG + AL +
Sbjct: 393 PHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEI 452
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
M + P ++ LI+ L
Sbjct: 453 YHKMKRKKRQPDCNTYAPLIQCL 475
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV++AYE ++ G P+V TY++++DG CKV R +E +ELL E+G N++
Sbjct: 235 RVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFN 294
Query: 162 ---------------IQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
Q +R L+ G P +T+N + LC G++ +A +L M E
Sbjct: 295 AMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVES 354
Query: 206 GKIPSRTSHDMLI 218
P ++ +I
Sbjct: 355 KVTPDVITYSSII 367
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 71/140 (50%), Gaps = 21/140 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
R EEA+ +L P+ YT +++GFCK G+ ++A ELL+E ERGV +V+
Sbjct: 91 RHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHS 150
Query: 160 TLIQLLQR-------LE----MGH--IPRTITFNNVIQALCGVGKIHKALLLLFLM---Y 203
TLIQ L R LE MG P IT+N V+ LC +I +AL L M Y
Sbjct: 151 TLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRY 210
Query: 204 E--HGKIPSRTSHDMLIKKL 221
E HG P S+ +I L
Sbjct: 211 EASHGCEPDVISYSTVIDAL 230
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
+++ G D TY+ + CK G+ +EA+E++ + + +GV
Sbjct: 558 LRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVR------------------ 599
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T+ V+++LCG+ ++ A+ M G P ++ +LI
Sbjct: 600 PDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLI 644
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV+EA E L ++ D + P+ A+++ CK G +EA +L+ +E G T
Sbjct: 480 RVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFK 539
Query: 163 QLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
L++ L + G + T++ + +C GK +A+ ++ M G
Sbjct: 540 ILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVR 599
Query: 209 PSRTSHDMLIKKL 221
P ++ +++ L
Sbjct: 600 PDEGTYVAVLRSL 612
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ +EA E++ + G++PD TY A++ C + R A+ + RG +VT
Sbjct: 581 GKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTY 640
Query: 162 IQLL 165
L+
Sbjct: 641 TLLI 644
>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 707
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+ L++ + + N ++ G +WS+ + L+ A G+++EA
Sbjct: 188 CEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCK----------------AGKMDEA 231
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ- 166
+L +K+ GL+ D+ YT+++ GFC G + L +E +ERG + +T L++
Sbjct: 232 MGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRG 291
Query: 167 ----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+E G P T+ +I LCGVGK +AL LL LM + + P+
Sbjct: 292 FCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPN 351
Query: 211 RTSHDMLIKKL 221
+++++I KL
Sbjct: 352 VVTYNIIINKL 362
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 19/140 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR++EA E+ + G++P+VYTYT ++DG C VG++ EA++LLN +++ NVVT
Sbjct: 295 LGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVT 354
Query: 161 LIQLLQRLEMGHI-----------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ +L + P IT+N+++ LC G + +A LL+LM
Sbjct: 355 YNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLML 414
Query: 204 EHGKI--PSRTSHDMLIKKL 221
+ P S + LI L
Sbjct: 415 KDSSYTDPDVISFNALIHGL 434
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 52/168 (30%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIM----------------------------------- 130
+A +L ++ + L PDV +Y ++
Sbjct: 160 KAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILI 219
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR-----------------LEMGHI 173
D FCK G+ +EAM LL E +G+ +++ L++ LE G
Sbjct: 220 DAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDS 279
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P IT+N +I+ C +G++ +A + M E G P+ ++ LI L
Sbjct: 280 PCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGL 327
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 21/167 (12%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
D DLL+ + + T ++ L G V +A E+ + N + P+ TYT ++DGF
Sbjct: 445 DIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGF 504
Query: 134 CKVGRSNEAME-------------------LLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
CK G N A LL+ ++G L + +QR + P
Sbjct: 505 CKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDD--SFP 562
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I+FN +I G I A LL M G P ++ LI +
Sbjct: 563 DVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRF 609
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFS-------------------NHLMVGRVEEAYEML 111
SV D+N LL +L D A + F L G ++ A +L
Sbjct: 528 SVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLL 587
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + + GL PD++TY+ +++ F K+G +EA+ ++ I+ G
Sbjct: 588 VGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSG 629
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 32/209 (15%)
Query: 34 ENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV 92
E P + ++K+ K S + + ++I +KK T +N LL L + D A
Sbjct: 348 EEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEAS 407
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
K +LM+ + +Y PDV ++ A++ G CK R ++A+++ + +E+
Sbjct: 408 KLL--YLMLK--DSSYT----------DPDVISFNALIHGLCKGNRLHQALDIYDLLVEK 453
Query: 153 -GVTQNVVTLIQLLQRLEMGH----------------IPRTITFNNVIQALCGVGKIHKA 195
G V T I L L+ G +P + T+ +I C G ++ A
Sbjct: 454 LGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVA 513
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LL M PS ++ L+ L ++
Sbjct: 514 KGLLCKMRLSELPPSVFDYNCLLSSLCKK 542
>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Glycine max]
Length = 678
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 77/145 (53%), Gaps = 17/145 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H G +++A ++L ++ +GLKPD++T+++I+DG C++ R+ EA+E E IE G+
Sbjct: 472 NGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGIN 531
Query: 156 QNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLL 198
N V ++LL+R++ G P T ++N +IQ C + K+ KA L
Sbjct: 532 PNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKL 591
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQ 223
M G P ++ I+ L +
Sbjct: 592 FDSMSRSGLNPDNYTYSAFIEALSE 616
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 94/208 (45%), Gaps = 36/208 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE- 106
+K + L+E D+F ++K G + + L+ L ++ + + + G +
Sbjct: 370 VKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNV 429
Query: 107 -AYEMLMN-----------------VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+Y M++N ++ G+ P++ T+ +++G CK G ++A +LL
Sbjct: 430 FSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLES 489
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
+E G+ ++ T ++ + +E G P + +N +I++LC +G
Sbjct: 490 LLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGD 549
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ +++ LL M + G P S++ LI+
Sbjct: 550 VARSVKLLRRMQKEGISPDTYSYNALIQ 577
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 19/127 (14%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV--------------KFFSNHLM---- 100
+F I G + + +N L+ ALV N D A +F N L+
Sbjct: 166 VFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVC 225
Query: 101 -VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
VG V+EA ++ +K+ G P+V+TYT +++GFC R +EA + + GV N
Sbjct: 226 KVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEA 285
Query: 160 TLIQLLQ 166
T+ L+
Sbjct: 286 TVRALVH 292
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 19/112 (16%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------------FSNHLM 100
+E ++ F + + G N + +N L+ +L + + +VK +S + +
Sbjct: 516 EEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNAL 575
Query: 101 V------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+ +VE+A ++ ++ GL PD YTY+A ++ + GR EA ++
Sbjct: 576 IQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMF 627
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 36/204 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMV- 101
+++ + I K G + +N +L A + D A+ F N L+
Sbjct: 316 MEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTA 375
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V+ A E+L +K+ G P + +Y ++DG K G++ EA+ELLNE + +G+ +
Sbjct: 376 LCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPD 435
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
++T + L +MG P T+ +N ++ LC + H A+ L
Sbjct: 436 IITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFI 495
Query: 201 LMYEHGKIPSRTSHDMLIKKLDQQ 224
M +G +P+ +++ +LI+ L +
Sbjct: 496 YMISNGCMPNESTYTILIEGLTYE 519
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 20/145 (13%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + + G+++ A ++ ++ ++PD YTY ++ G C GR+ A+ +L++ + RG
Sbjct: 130 MVAGYCVTGQLDAARRLVADMP---MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRG 186
Query: 154 VTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
+VVT LL+ EM G P IT+N V+ +C G++ A+
Sbjct: 187 CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAI 246
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L + HG P+ S+++++K L
Sbjct: 247 EFLKSLPSHGCEPNTVSYNIVLKGL 271
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GRV++A E L ++ + G +P+ +Y ++ G C R +A +L+ E ++G NVVT
Sbjct: 240 GRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTF 299
Query: 161 --LIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R + G P ++++N ++ A C K+ +A+ + LM
Sbjct: 300 NMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVS 359
Query: 205 HGKIPSRTSHDMLIKKL 221
G P S++ L+ L
Sbjct: 360 RGCYPDIVSYNTLLTAL 376
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A ++L ++ G PD+ TY +++G C+ GR ++A+E L G N V+ +
Sbjct: 208 KQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIV 267
Query: 165 LQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L+ L + G+ P +TFN +I LC G + A+ +L + ++G
Sbjct: 268 LKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGC 327
Query: 208 IPSRTSHDMLIKKLDQQ 224
P+ S++ ++ +Q
Sbjct: 328 TPNSLSYNPILHAFCKQ 344
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE A E+L + G P+ +Y I+ FCK + + AM + + RG ++V+
Sbjct: 310 GLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSY 369
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++LL +L + G P I++N VI L GK +AL LL M
Sbjct: 370 NTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVT 429
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P ++ + L ++
Sbjct: 430 KGLQPDIITYSTISSGLCRE 449
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
KA KE +++ N + G + ++ + L + + A++ F
Sbjct: 413 KAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTV 472
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N +++G A ++ + + ++G P+ TYT +++G G EA ELL E
Sbjct: 473 LYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGEL 532
Query: 150 IERGV 154
RGV
Sbjct: 533 CSRGV 537
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 36/201 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMV- 101
+++ I K G + + +N LL A + D A+ F N L+
Sbjct: 320 LEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 379
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V+ A E+L +K+ G P + +Y ++DG K G++ EA+ELLNE + +G+ +
Sbjct: 380 LCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD 439
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
++T + L +MG P T+ +N +I LC + H A+ L
Sbjct: 440 IITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFA 499
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M +G +P+ +++ +LI+ L
Sbjct: 500 YMIGNGCMPNESTYTILIEGL 520
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GRV++A E L N+ + G +P+ +Y ++ G C R +A EL+ E ++G NVVT
Sbjct: 244 GRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTF 303
Query: 161 --LIQLLQR-------LEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R LE+ G P ++++N ++ A C K+ KA+ L LM
Sbjct: 304 NMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS 363
Query: 205 HGKIPSRTSHDMLIKKL 221
G P S++ L+ L
Sbjct: 364 RGCYPDIVSYNTLLTAL 380
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A ++L +++ G PD+ TY +++G C+ GR ++A+E L G N V+ +
Sbjct: 212 KQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIV 271
Query: 165 LQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L+ L EMG P +TFN +I LC G + AL +L + ++G
Sbjct: 272 LKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 331
Query: 208 IPSRTSHDMLIKKLDQQ 224
P+ S++ L+ +Q
Sbjct: 332 SPNSLSYNPLLHAFCKQ 348
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 20/153 (13%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
DT ++ GR A +L + PDV TYT +++ CK +AM+LL+E
Sbjct: 164 DTLIRGLCGR---GRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDE 220
Query: 149 AIERGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGK 191
++G T ++VT I+ L+ L G P T+++N V++ LC +
Sbjct: 221 MRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAER 280
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L+ M + G P+ + +MLI L ++
Sbjct: 281 WEDAEELMGEMGQKGCPPNVVTFNMLISFLCRK 313
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------------- 168
D YT ++ G C GR+ A+ +L+E + R +VVT LL+
Sbjct: 159 DAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLL 218
Query: 169 -EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
EM G P +T+N V+ +C G++ A+ L + +G P+ S+++++K L
Sbjct: 219 DEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 275
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-AIE--------- 151
GR EA +L PDV Y A+M G+C G+ + A E A+E
Sbjct: 112 GRTAEARRVLA-----ACGPDVMAYNAMMAGYCGAGQVDAARRWCAERAVERDAYTCDTL 166
Query: 152 ------RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
RG T N + ++ + R +P +T+ +++A C +A+ LL M +
Sbjct: 167 IRGLCGRGRTANALAVLDEMLRRRC--VPDVVTYTILLEATCKRSGYKQAMKLLDEMRDK 224
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P ++++++ + Q+
Sbjct: 225 GCTPDIVTYNVVVNGICQE 243
>gi|212275248|ref|NP_001130560.1| uncharacterized protein LOC100191659 [Zea mays]
gi|194689480|gb|ACF78824.1| unknown [Zea mays]
Length = 558
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
+A+ +D++ A + + F+++ K G + D ++ L T
Sbjct: 195 EAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMLGLGCEPTIRTYNSLV 254
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
VGR+EEA E+L +K+ L PD+YT+T ++DGFCKVGR+ EA + ++AI
Sbjct: 255 GGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAIFHDAI----- 309
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY---EHGKIPSRT 212
MG P T T+N ++ C G KA LL M + +P +T
Sbjct: 310 -------------GMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPDKT 356
Query: 213 SHDMLIKKL 221
S +++ L
Sbjct: 357 SFGIVLTAL 365
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 34/175 (19%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM 100
A+ +I P++ER+ + + +++D +VSD+ND+L AL + TAV F +
Sbjct: 114 ARDCAKRIMELPVEERVKVLDLLQRDDAALTVSDYNDILSALARAGDHATAVALFRAMPV 173
Query: 101 V----------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
G +EA L + G +P V T++A++ CK GR +AME
Sbjct: 174 APDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAME 233
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+L+ L +G P T+N+++ LC VG++ +AL LL
Sbjct: 234 VLD------------------AMLGLGCEPTIRTYNSLVGGLCYVGRLEEALELL 270
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V A E+L +++N G KP+VY+YT ++DGFCK+G+ +EA LLNE G+ N V
Sbjct: 397 GLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGF 456
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EM G P TFN++I LC V +I AL LL M
Sbjct: 457 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 516
Query: 205 HGKIPSRTSHDMLI 218
G + + +++ LI
Sbjct: 517 EGVVANTVTYNTLI 530
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E ++ N + DG + FN L+ A F H R+ EA
Sbjct: 430 KLGKIDEAYNLLNEMSADGLKPNTVGFNCLISA------------FCKEH----RIPEAV 473
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL---- 164
E+ + G KPDVYT+ +++ G C+V A+ LL + I GV N VT L
Sbjct: 474 EIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAF 533
Query: 165 LQRLEM-------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
L+R E+ G + IT+N++I+ LC G++ KA L M G +PS
Sbjct: 534 LRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSS 593
Query: 212 TSHDMLIKKL 221
S ++LI L
Sbjct: 594 ISCNILINGL 603
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++A + + DGL P + +++G C+ G EA+E E + RG T ++VT
Sbjct: 572 GEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTF 631
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L G I P T+T+N ++ LC G ++ A LLL E
Sbjct: 632 NSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIE 691
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P+ + +L++ L Q
Sbjct: 692 DGFVPNDRTWSILLQSLVPQ 711
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 33/177 (18%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVG-------------------RVEEAYEMLMNVK 115
F ++ AL +NE D+A+ + G RV EA ++L +
Sbjct: 214 FGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMF 273
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI- 173
G PD T+ ++ G CK R NEA +++N + RG T + +T L+ L ++G +
Sbjct: 274 LMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVD 333
Query: 174 -----------PRTITFNNVIQALCGVGKIHKALLLLF-LMYEHGKIPSRTSHDMLI 218
P ++ FN +I G++ A +L ++ +G +P +++ LI
Sbjct: 334 AAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 390
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLI----------QLL 165
+ P ++T+ +M C V + A+ +L + + G N V TLI + L
Sbjct: 207 IPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEAL 266
Query: 166 QRLE----MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
Q LE MG +P TFN+VI LC +I++A ++ M G P ++ L+ L
Sbjct: 267 QLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGL 326
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P TF V++ALC V ++ AL +L M +HG +P+ + LI L +
Sbjct: 209 PTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSK 258
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 36/201 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMV- 101
+++ I K G + +N LL A + D A+ F N L+
Sbjct: 318 LEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 377
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V+ A E+L +K+ G P + +Y ++DG K G++ EA+ELLNE + +G+ +
Sbjct: 378 LCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD 437
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
++T + L +MG P T+ +N +I LC + H A+ L
Sbjct: 438 IITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFA 497
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M +G +P+ +++ +LI+ L
Sbjct: 498 YMIGNGCMPNESTYTILIEGL 518
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GRV++A E L N+ + G +P+ +Y ++ G C R +A EL+ E ++G NVVT
Sbjct: 242 GRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTF 301
Query: 161 --LIQLLQR-------LEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R LE+ G P ++++N ++ A C K+ KA+ L LM
Sbjct: 302 NMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS 361
Query: 205 HGKIPSRTSHDMLIKKL 221
G P S++ L+ L
Sbjct: 362 RGCYPDIVSYNTLLTAL 378
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A ++L +++ G PD+ TY +++G C+ GR ++A+E L G N V+ +
Sbjct: 210 KQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIV 269
Query: 165 LQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L+ L EMG P +TFN +I LC G + AL +L + ++G
Sbjct: 270 LKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 329
Query: 208 IPSRTSHDMLIKKLDQQ 224
P+ S++ L+ +Q
Sbjct: 330 TPNSLSYNPLLHAFCKQ 346
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
++PD YTY ++ G C GR+ A+ +L+E + R +VVT LL+
Sbjct: 154 VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAM 213
Query: 169 ----EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
EM G P +T+N V+ +C G++ A+ L + +G P+ S+++++K L
Sbjct: 214 KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 273
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR A +L + PDV TYT +++ CK +AM+LL+E ++G T ++VT
Sbjct: 172 GRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTY 231
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+ L+ L G P T+++N V++ LC + A L+ M +
Sbjct: 232 NVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQ 291
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ + +MLI L ++
Sbjct: 292 KGCPPNVVTFNMLISFLCRK 311
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 26/118 (22%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR EA +L PDV Y A++ G+C G+ + A L+ E
Sbjct: 110 GRTAEARRVLA-----ACGPDVMAYNAMVAGYCGAGQLDAARRLVAE------------- 151
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
M P T+N +I+ LCG G+ AL +L M +P ++ +L++
Sbjct: 152 --------MPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLE 201
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+++ I F ++ G + +N +++ L E +A+ F+ M+G
Sbjct: 454 IEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFA--YMIG---------- 501
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+G P+ TYT +++G G EA +LL+E RGV +
Sbjct: 502 ----NGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVR 541
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 36/194 (18%)
Query: 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV 101
QRF K ++ +F++I K G SV FN L+ + ++ +
Sbjct: 144 QRFC---KEGEMRLAQSVFDAITKWGLRPSVVSFNTLI----------------NGYIKL 184
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++E + + + G +PDVYTY+ +++G CK G+ +EA EL NE ++ G+ N VT
Sbjct: 185 GDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTF 244
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q L G P IT+N +I LC G++ + L+ M
Sbjct: 245 TTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIM 304
Query: 205 HGKIPSRTSHDMLI 218
+G P + S+ LI
Sbjct: 305 NGLKPDKISYTTLI 318
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 22/113 (19%)
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
EM+MN GLKPD +YT ++DG CK G A+EL N+ I+ + RL
Sbjct: 301 EMIMN----GLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESI------------RL 344
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + + +I LC G+ A +L M G P ++ M+I +
Sbjct: 345 D------DVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEF 391
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKPD TYT I++ FCK S A +LL E G VVT
Sbjct: 360 GRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLPGVVT 418
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 36/201 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMV- 101
+++ I K G + +N LL A + D A+ F N L+
Sbjct: 192 LEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 251
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V+ A E+L +K+ G P + +Y ++DG K G++ EA+ELLNE + +G+ +
Sbjct: 252 LCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD 311
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
++T + L +MG P T+ +N +I LC + H A+ L
Sbjct: 312 IITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFA 371
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M +G +P+ +++ +LI+ L
Sbjct: 372 YMIGNGCMPNESTYTILIEGL 392
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GRV++A E L N+ + G +P+ +Y ++ G C R +A EL+ E ++G NVVT
Sbjct: 116 GRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTF 175
Query: 161 --LIQLLQR-------LEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R LE+ G P ++++N ++ A C K+ KA+ L LM
Sbjct: 176 NMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS 235
Query: 205 HGKIPSRTSHDMLIKKL 221
G P S++ L+ L
Sbjct: 236 RGCYPDIVSYNTLLTAL 252
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A ++L +++ G PD+ TY +++G C+ GR ++A+E L G N V+ +
Sbjct: 84 KQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIV 143
Query: 165 LQRL--------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L+ L EMG P +TFN +I LC G + AL +L + ++G
Sbjct: 144 LKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 203
Query: 208 IPSRTSHDMLIKKLDQQ 224
P+ S++ L+ +Q
Sbjct: 204 TPNSLSYNPLLHAFCKQ 220
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
++PD YTY ++ G C GR+ A+ +L+E + R +VVT LL+
Sbjct: 28 VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAM 87
Query: 169 ----EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
EM G P +T+N V+ +C G++ A+ L + +G P+ S+++++K L
Sbjct: 88 KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 147
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR A +L + PDV TYT +++ CK +AM+LL+E ++G T ++VT
Sbjct: 46 GRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTY 105
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+ L+ L G P T+++N V++ LC + A L+ M +
Sbjct: 106 NVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQ 165
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ + +MLI L ++
Sbjct: 166 KGCPPNVVTFNMLISFLCRK 185
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 36/201 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMV- 101
++I + I K G + +N +L A + D A+ F N L+
Sbjct: 312 MEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTA 371
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V+ A E+L +K+ G P + +Y ++DG K G++ EA+ELLNE + +G+ +
Sbjct: 372 LCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPD 431
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
++T + L +MG P T+ +N ++ LC H A+ L
Sbjct: 432 IITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFT 491
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M +G +P+ +++ +LI+ L
Sbjct: 492 YMVSNGCMPNESTYTILIEGL 512
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 73/145 (50%), Gaps = 20/145 (13%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + + G+++ A ++ + ++PD YTY ++ G C GR++ A+ +L++ + RG
Sbjct: 126 MVAGYCVTGQLDNARRLVAAMP---MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRG 182
Query: 154 VTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
+VVT LL+ EM G P +T+N V+ +C G++ A+
Sbjct: 183 CVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAM 242
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L + +G P+ S+++++K L
Sbjct: 243 EFLKSLPSYGCEPNTVSYNIVLKGL 267
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GRV++A E L ++ + G +P+ +Y ++ G C R +A +L+ E +G NVVT
Sbjct: 236 GRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTF 295
Query: 161 --LIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R + G P ++++N ++ A C K+ +A+ + LM
Sbjct: 296 NMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVS 355
Query: 205 HGKIPSRTSHDMLIKKL 221
G P S++ L+ L
Sbjct: 356 SGCYPDIVSYNTLLTAL 372
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 36/186 (19%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRV-------------------EEAYEMLMNVK 115
+N L+ L D A+ + L G V ++A ++L ++
Sbjct: 155 YNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMR 214
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------- 168
+ G PD+ TY +++G C+ GR ++AME L G N V+ +L+ L
Sbjct: 215 DKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWE 274
Query: 169 -------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
EM G P +TFN +I LC G + A+ +L + ++G P+ S++ ++
Sbjct: 275 DAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPIL 334
Query: 219 KKLDQQ 224
+Q
Sbjct: 335 HAFCKQ 340
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 26/118 (22%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR EA +L + + PDV +Y A++ G+C G+ + A L+
Sbjct: 104 GRTAEARRVLASCE-----PDVMSYNAMVAGYCVTGQLDNARRLVA-------------- 144
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
M P T T+N +I+ LCG G+ AL +L M G +P ++ +L++
Sbjct: 145 -------AMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLE 195
>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
Length = 577
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 39/224 (17%)
Query: 36 PRSLQAQRFVDKIK--ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
PR++ V+ K P E +++ +K+ G ++ DFN +L AL +EQ+ A +
Sbjct: 176 PRAMYYNAVVNGFKRQGKP-SECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQ 234
Query: 94 FFSNHLM-------------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
FF L G+V+EAY +L+ + + PDV TY++I+DGFC
Sbjct: 235 FFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFC 294
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE-----------------MGHIPRTI 177
K GR ++A ++ + + VT + LL G IP
Sbjct: 295 KAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQ 354
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+N ++ +CG + AL + M + P ++ LI+ L
Sbjct: 355 TYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCL 398
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 41/212 (19%)
Query: 48 IKASPLKERIDIFNSIKK-----DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG 102
KA+ + E +++F+ ++K G V ++ ++ AL D A ++F VG
Sbjct: 79 CKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVG 138
Query: 103 -------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
RV+EAY +LM +K + + P Y A+++GF + G+ +E +
Sbjct: 139 CAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECL 198
Query: 144 ELLNEAIERGVTQNVVTL----------------IQLLQR-LEMGHIPRTITFNNVIQAL 186
ELL E+G N++ Q +R L+ G P +T+N + L
Sbjct: 199 ELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGL 258
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
C GK+ +A +L M E P ++ +I
Sbjct: 259 CKAGKVDEAYRILLEMVESKVTPDVITYSSII 290
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 21/117 (17%)
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQR-------LE----MG 171
YT +++GFCK G+ ++A ELL+E ERGV +V+ TLIQ L R LE MG
Sbjct: 2 YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61
Query: 172 H--IPRTITFNNVIQALCGVGKIHKALLLLFLM---YE--HGKIPSRTSHDMLIKKL 221
P IT+N V+ LC +I + L L M YE HG P S+ +I L
Sbjct: 62 EECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDAL 118
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V++A+E+L +K G+K DV ++ ++ G C+ GR +EA+E E + NV+T
Sbjct: 13 GQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE-CSPNVITY 71
Query: 162 IQLL--------------------QRLEMGHI--PRTITFNNVIQALCGVGKIHKALLLL 199
++ +R E H P I+++ VI ALC ++ KA
Sbjct: 72 NTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYF 131
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M G P+ ++ LI L
Sbjct: 132 KRMRAVGCAPNVVTYSSLIDGL 153
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 23/145 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-----GVTQ 156
GR++EA E ++ + P+V TY +++G CK R +E +EL ++ +R G
Sbjct: 48 GRIDEALEQFKSMGEE-CSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEP 106
Query: 157 NVV---TLIQLL---QRLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+V+ T+I L QR++ +G P +T++++I LC V ++ +A LL
Sbjct: 107 DVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLL 166
Query: 200 FLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ +P ++ ++ +Q
Sbjct: 167 MQLKGEDMVPRAMYYNAVVNGFKRQ 191
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE---RGVTQNVV 159
RV+EA E L ++ D + P+ A+++ CK G +EA +L+ +E G V
Sbjct: 403 RVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAV 462
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+I+ Q + G P T+ V+++LCG+ ++ A+ M G P ++ +LI
Sbjct: 463 EVIE--QMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLI 519
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 11/162 (6%)
Query: 15 LLVDSPSRSPSAAESLD----LKENPRSLQAQRFVDKIKASPLKERID----IFNSIKKD 66
+L+D + S +L+ +K R A + I+ R+D + ++ D
Sbjct: 358 VLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEAD 417
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV---GRVEEAYEMLMNVKNDGLKPDV 123
+ + + L+ L E D A N + + G +EA E++ + G++PD
Sbjct: 418 NVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDE 477
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
TY A++ C + R + A+ + RG +VT L+
Sbjct: 478 ATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLI 519
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 36/194 (18%)
Query: 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV 101
QRF K ++ +F++I K G SV FN L+ + ++ +
Sbjct: 144 QRFC---KEGEMRLAQSVFDAITKWGLRPSVVSFNTLI----------------NGYIKL 184
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++E + + + G +PDVYTY+ +++G CK G+ +EA EL NE ++ G+ N VT
Sbjct: 185 GDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTF 244
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q L G P IT+N +I LC G++ + L+ M
Sbjct: 245 TTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIM 304
Query: 205 HGKIPSRTSHDMLI 218
+G P + S+ LI
Sbjct: 305 NGLKPDKISYTTLI 318
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 22/113 (19%)
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
EM+MN GLKPD +YT ++DG CK G A+EL N+ I+ + RL
Sbjct: 301 EMIMN----GLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESI------------RL 344
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + + +I LC G+ A +L M G P ++ M+I +
Sbjct: 345 D------DVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEF 391
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKPD TYT I++ FCK S A +LL E G VVT
Sbjct: 360 GRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVPGVVT 418
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 35/191 (18%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
+P S +D + KA L + D+F + G S + L+ L M N D A +
Sbjct: 7 SPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 66
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F++ MN + G P TY I+D CK G EA +L+ + IE G
Sbjct: 67 LFAD--------------MNRR--GCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDG 110
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
H+P +T+N V+ LC G++ +ALLL M G P+R S
Sbjct: 111 ------------------HVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRS 152
Query: 214 HDMLIKKLDQQ 224
H+ +I L QQ
Sbjct: 153 HNTIILGLCQQ 163
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 37/223 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P S +D + KA L E +F + G S +N ++ + + D A++
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALEL 242
Query: 95 FSN-------------------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
F + H G+++EA+ +L + +DG PDV TY+ ++ G C
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS 302
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTIT 178
+ R ++A LL + ++R VVT L+ L G P +T
Sbjct: 303 IARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT 362
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N ++ C G+ +A LL M G P+ ++ L+ L
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGL 405
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++EA E+L + + G PDV TY ++ G C+ G++ A ELL++ + RG+ NVVT
Sbjct: 338 AGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT 397
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L G P T+ +I C G++ L L M
Sbjct: 398 YTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV 457
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P + L +L
Sbjct: 458 CAGISPDHVVYGTLAAEL 475
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 112/258 (43%), Gaps = 45/258 (17%)
Query: 8 SPTPFSVLLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDI 59
SP ++V+ +D+ + E+ DL + P + +D + K+ ++E + +
Sbjct: 79 SPVTYNVI-IDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLL 137
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------SNHLMV----- 101
FN +++ G + N +++ L ++ D A + F S +++
Sbjct: 138 FNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAK 197
Query: 102 -GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G++ EAY++ + + G+ P TY ++ G C +EA+EL +G + T
Sbjct: 198 AGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFT 257
Query: 161 L----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+LL+R+ + GH+P +T++ +I LC + ++ A LL M
Sbjct: 258 FNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMV 317
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ P+ + + LI L
Sbjct: 318 KRQCKPTVVTQNTLIHGL 335
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA+ L E +F +K G ++ + L++ + D +K F
Sbjct: 406 CKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFG----------- 454
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
EM+ G+ PD Y + CK GRS A+E+L E E
Sbjct: 455 -EMVCA----GISPDHVVYGTLAAELCKSGRSARALEILREGRE 493
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 35/191 (18%)
Query: 66 DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------LMVG-----RVEEA 107
D + V FN L+ L + +TA++FF L+ G RV +A
Sbjct: 73 DRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQA 132
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
E+L ++K G PDV TYT ++DG CK + A E+L E ++ G N+VT LL
Sbjct: 133 VELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHG 192
Query: 168 L--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L +M G P +T+ +I LC VG++ A +L M + G P
Sbjct: 193 LCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPD 252
Query: 211 RTSHDMLIKKL 221
++MLI L
Sbjct: 253 LMIYNMLINGL 263
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +L+ VK+ G PDV Y+ ++DG CK G+ +EA +L G +VVT
Sbjct: 303 RLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYS 362
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L MG P T+T+N++I+ LC + + +A+ L+ M
Sbjct: 363 TLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS 422
Query: 206 GKIPSRTSHDMLIKKL 221
PS ++++LI +
Sbjct: 423 NCAPSAVTYNILIHGM 438
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 37/214 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
KA + E I + G V ++ ++ L N D A +
Sbjct: 264 CKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDV 323
Query: 96 -------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G+V+EA+++ + DG DV TY+ ++DG CK GR +EA LL
Sbjct: 324 ILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLAR 383
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGK 191
+ G + +T I+L++ +E + P +T+N +I +C + +
Sbjct: 384 MVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMER 443
Query: 192 IHKALLLLFL-MYEHGKIPSRTSHDMLIKKLDQQ 224
+ A L F M ++G IP ++ +L++ L +
Sbjct: 444 VDSAALDYFQEMIDNGVIPDHITYSILLEGLKKS 477
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRV++A ML ++ + G PD+ Y +++G CK + +E++ LL A+ G+ +VVT
Sbjct: 231 VGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVT 290
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L G P I ++ +I LC GK+ +A L +M
Sbjct: 291 YSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMT 350
Query: 204 EHGKIPSRTSHDMLIKKL 221
G ++ LI L
Sbjct: 351 GDGCDADVVTYSTLIDGL 368
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGH 172
+++ G +P+V TY +++DG CK + A EL + ++VT LL L G
Sbjct: 1 MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60
Query: 173 IPRT---------------ITFNNVIQALCGVGKIHKAL 196
+ R I+FN ++ LC GKI AL
Sbjct: 61 LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETAL 99
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 23/160 (14%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
KA + E D++ + DG + V ++ L+ L D A + + +G
Sbjct: 334 CKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPST 393
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR-SNEAMELLN 147
++EA E++ ++ P TY ++ G C++ R + A++
Sbjct: 394 MTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQ 453
Query: 148 EAIERGVTQNVVTLIQLLQRLEMG---HIPRTITFNNVIQ 184
E I+ GV + +T LL+ L+ H R + + ++Q
Sbjct: 454 EMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQ 493
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 36/192 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE 106
K LKE ID+F + K G+ + +N L+ S +G+++E
Sbjct: 135 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI----------------SGFCRMGKMDE 178
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A +L + G PDV TYT +M+GFCK+ R ++A +LLN+ +G+T NVVT L+
Sbjct: 179 AMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMD 238
Query: 167 RL-------EMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
L + HI P T+N ++ C V ++ +A F++ E P
Sbjct: 239 GLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEA--RKFMLEEMDCPP 296
Query: 210 SRTSHDMLIKKL 221
+ S +++I+ L
Sbjct: 297 NVVSFNIMIRGL 308
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 25/155 (16%)
Query: 87 EQDTAVKFFSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141
E TAV + N L+ G R EAY++L + G PD++TYT ++ GFCK +S++
Sbjct: 50 EVPTAVTY--NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDD 107
Query: 142 AMELLNEAIERGVTQNVVTL----------------IQLLQRL--EMGHIPRTITFNNVI 183
A+ + + + RG +VVT I L R+ +P T+T+N++I
Sbjct: 108 ALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI 167
Query: 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
C +GK+ +A+ LL M E G P ++ L+
Sbjct: 168 SGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLM 202
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 39/171 (22%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
K + L + D+ N + + G +V F L+ L N AV
Sbjct: 206 CKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTV 265
Query: 97 --------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ V ++EEA + ++ + P+V ++ ++ G CKV RS+EAMEL+ E
Sbjct: 266 YTYNTILDGYCRVNQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEE 323
Query: 149 AIERGVTQNVV---TLIQLLQR---------------LEMGHIPRTITFNN 181
A R +VV T+I +L R E G +P +IT++
Sbjct: 324 ARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYST 374
>gi|219885281|gb|ACL53015.1| unknown [Zea mays]
gi|414866677|tpg|DAA45234.1| TPA: hypothetical protein ZEAMMB73_414823 [Zea mays]
Length = 559
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 21/124 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR+EEA E+L +K+ L PD+YT+T ++DGFCKVGR+ EA + ++AI
Sbjct: 261 VGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAIFHDAI---------- 310
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY---EHGKIPSRTSHDML 217
MG P T T+N ++ C G KA LL M + +P +TS ++
Sbjct: 311 --------GMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIV 362
Query: 218 IKKL 221
+ L
Sbjct: 363 LTAL 366
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 34/175 (19%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM 100
A+ +I P++ER+ + + + +D +VSD+ND+L AL + TAV F +
Sbjct: 115 ARDCAKRIMELPVEERVKVLDLLPRDDAALTVSDYNDILSALARAGDHATAVALFRAMPV 174
Query: 101 V----------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
G +EA L + G +P V T++A++ CK GR +AME
Sbjct: 175 APDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAME 234
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+L+ +G P T+N+++ LC VG++ +AL LL
Sbjct: 235 VLDAMC------------------GLGCEPTIRTYNSLVGGLCYVGRLEEALELL 271
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 36/201 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMV- 101
+++ I K G + +N LL A + D A+ F N L+
Sbjct: 117 LEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 176
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V+ A E+L +K+ G P + +Y ++DG K G++ EA+ELLNE + +G+ +
Sbjct: 177 LCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD 236
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
++T + L +MG P T+ +N +I LC + H A+ L
Sbjct: 237 IITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFA 296
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M +G +P+ +++ +LI+ L
Sbjct: 297 YMIGNGCMPNESTYTILIEGL 317
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GRV++A E L N+ + G +P+ +Y ++ G C R +A EL+ E ++G NVVT
Sbjct: 41 GRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTF 100
Query: 161 --LIQLLQR-------LEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R LE+ G P ++++N ++ A C K+ KA+ L LM
Sbjct: 101 NMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS 160
Query: 205 HGKIPSRTSHDMLIKKL 221
G P S++ L+ L
Sbjct: 161 RGCYPDIVSYNTLLTAL 177
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A ++L +++ G PD+ TY +++G C+ GR ++A+E L G N V+ +
Sbjct: 9 KQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIV 68
Query: 165 LQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L+ L EMG P +TFN +I LC G + AL +L + ++G
Sbjct: 69 LKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 128
Query: 208 IPSRTSHDMLIKKLDQQ 224
P+ S++ L+ +Q
Sbjct: 129 TPNSLSYNPLLHAFCKQ 145
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRL-EMGHIPRT 176
CK +AM+LL+E ++G T ++VT I+ L+ L G P T
Sbjct: 3 CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+++N V++ LC + A L+ M + G P+ + +MLI L ++
Sbjct: 63 VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRK 110
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+++ I F ++ G + +N +++ L E +A+ F+ M+G
Sbjct: 253 IEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFA--YMIG---------- 300
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+G P+ TYT +++G G EA +LL+E RGV +
Sbjct: 301 ----NGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVR 340
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 33/186 (17%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFS---------------NHLM-VGRVEEAYEMLMNVK 115
V +N + L + D A KF + N L G ++ A ML +
Sbjct: 150 VVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMT 209
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI- 173
N G PDV TY++++DGFCK G AM LL+ ++ G N+V LL L +GHI
Sbjct: 210 NRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIG 269
Query: 174 ---------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +++N I LC ++ KA + M E G P+ +S+ ML+
Sbjct: 270 KAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLV 329
Query: 219 KKLDQQ 224
++L ++
Sbjct: 330 EELCKK 335
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR ++A ++L +++ G P++YTY I++G C+ + +EA ++L E RG +VVT
Sbjct: 94 GRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTY 153
Query: 162 IQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
++ L M P +++ VI LC G + A +L M G
Sbjct: 154 NSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGC 213
Query: 208 IPSRTSHDMLI 218
P ++ LI
Sbjct: 214 TPDVVTYSSLI 224
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 17/107 (15%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A++ L + + P V TYT I+DG CK GR+ +A++LL+E ++G + N+ T ++
Sbjct: 63 QAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIV 122
Query: 166 QRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKA 195
+ L EM G+ P +T+N+ I+ LC ++ +A
Sbjct: 123 EGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEA 169
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ +A ML+ + ++G PD TY ++D CK G+S A+EL EA++ G +VVT
Sbjct: 442 RLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYS 501
Query: 163 QLLQRL 168
L+ L
Sbjct: 502 ALITGL 507
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +EA + V ++ + +PDV+ Y ++D CK + ++A+++ + +ER NVVT
Sbjct: 371 GRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC-NVVT 429
Query: 161 L-----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LL ++ G IP +T+ ++ A+C GK AL L
Sbjct: 430 WNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAV 489
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ G +P ++ LI L
Sbjct: 490 KGGCVPDVVTYSALITGL 507
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 33/169 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K ++ + + +S+ K G ++ +N LL AL L G + +A
Sbjct: 228 CKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRL----------------GHIGKA 271
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ML+ ++ G PDV +Y A +DG CK R +A + + +ERG T N + L++
Sbjct: 272 EDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEE 331
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L E I + + ++ LC G+ +A L
Sbjct: 332 LCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALF 380
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 18/122 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E+A ++L +K G PD Y A++ G+ K +A + L E ++
Sbjct: 25 QLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHC-------- 76
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
+P +T+ N++ LC G+ A+ LL M + G P+ +++++++ L
Sbjct: 77 ----------LPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLC 126
Query: 223 QQ 224
++
Sbjct: 127 EE 128
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 21/208 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNS-IKKDGTNWSVSD---FNDLLMALVMLNE 87
L +N R +A+ F D + +K ++ + I T ++S+ F DL++ + +
Sbjct: 314 LCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPD 373
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
FFS + G +++A ++ ++ GL P+V Y A++D CK+GR ++A N
Sbjct: 374 HHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFN 433
Query: 148 EAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVG 190
+ I GVT N+V L+ + L+ G P + FN +I LC VG
Sbjct: 434 QMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVG 493
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ + L+ LM G P S+ LI
Sbjct: 494 RVMEGRRLIDLMEHVGVRPDAFSYTPLI 521
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 37/183 (20%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF--------------FSNHLM----- 100
FN + +G ++ FN L+ L +++ + A + F N L+
Sbjct: 432 FNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCN 491
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRV E ++ +++ G++PD ++YT ++ G+C GR++EA ++ + + G++
Sbjct: 492 VGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLS----- 546
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +T+N ++ C +I A L M G P +++ ++
Sbjct: 547 -------------PTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHG 593
Query: 221 LDQ 223
L Q
Sbjct: 594 LFQ 596
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+L +G+ +E +ML + GLKPD YTY ++++ CK GR EA + I +G+
Sbjct: 278 GYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKP 337
Query: 157 NVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
V T L+ +E G P FN A G I KA+ +
Sbjct: 338 KVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIF 397
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M +HG P+ ++ LI L
Sbjct: 398 NKMRQHGLSPNVVNYGALIDAL 419
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 33/189 (17%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
AS + + +F + + G V +N +L L R EA E
Sbjct: 562 ASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL----------------FQTKRFSEAKE 605
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
+ +N+ N G K D+YTY I++G CK +EA ++ +G+ N++T ++ L
Sbjct: 606 LYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALL 665
Query: 170 MGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
G +P +T+ V + L G + + L M ++G P+
Sbjct: 666 KGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQ 725
Query: 213 SHDMLIKKL 221
+ L+++L
Sbjct: 726 MLNALVRRL 734
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G+V++ Y + + + + G+ PDV TYT ++DG CK + A + + I+ G N T
Sbjct: 213 GQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTY 272
Query: 161 ---------------LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++Q+L+ + G P T+ +++ LC G+ +A M
Sbjct: 273 NCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIR 332
Query: 205 HGKIPSRTSHDMLI 218
G P +++ +LI
Sbjct: 333 KGIKPKVSTYGILI 346
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 92/206 (44%), Gaps = 34/206 (16%)
Query: 37 RSLQAQRFVD---KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
R L+ +R + + ++ L + + +F+ + SV FN LL A V +A +
Sbjct: 11 RCLELERIIAERARSRSLGLDDALKLFDELLHHARPASVRAFNHLLTA-VSRARCSSASE 69
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+H + ++ +D + P++ TY+ ++ FC++G ++ G
Sbjct: 70 LAVSH---------FNRMVRECSDKVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTG 120
Query: 154 VTQNVVTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
+ + + QLL+ L E+G +P T+++ +++ LC + +A
Sbjct: 121 WRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEA 180
Query: 196 LLLLFLMY-EHGKI--PSRTSHDMLI 218
L LL +M +HG+ P+ S+ ++I
Sbjct: 181 LELLHMMADDHGRRCPPNVVSYSIVI 206
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 103 RVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE---RGVTQNV 158
RV EA ++L+ + G PD +YT ++ G C R+ EA+ELL+ + R NV
Sbjct: 140 RVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNV 199
Query: 159 VTLI-----------------QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
V+ L+ ++ G P +T+ VI LC +A +
Sbjct: 200 VSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQ 259
Query: 202 MYEHGKIPSRTSHDMLI 218
M ++G P+ +++ LI
Sbjct: 260 MIDNGFKPNNYTYNCLI 276
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 46/233 (19%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
+P S +D + KA L + ++F + G S + L+ L M N D A +
Sbjct: 320 SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 379
Query: 94 FFSN-------------HLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F++ ++M+ G +EEA +++ + DG PDV TY +MDG C
Sbjct: 380 LFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLC 439
Query: 135 KVGRSNEAMELLNEAIERGVTQN-------VVTLIQ------------------LLQRL- 168
K R EA+ L NE G T N ++ L Q LL+R+
Sbjct: 440 KSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMT 499
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ GH+P +T++ +I LC + ++ A LL M + P+ + + LI L
Sbjct: 500 DDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGL 552
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA E+L + + G PDV TY ++ G C+ G++ A ELL++ + RG+ NVVT
Sbjct: 556 GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTY 615
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L G P T+ +I C G++ L L M
Sbjct: 616 TALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVC 675
Query: 205 HGKIPSRTSHDMLIKKL 221
G P + L +L
Sbjct: 676 AGISPDHVVYGTLAAEL 692
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 52/174 (29%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M + + PD ++Y ++DG K G+ N+A L + + GVT + V
Sbjct: 303 RIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYT 362
Query: 163 QLLQRLEM---------------------------------------------------- 170
L+ L M
Sbjct: 363 SLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIED 422
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
GH+P +T+N V+ LC ++ +ALLL M G P+R SH+ +I L QQ
Sbjct: 423 GHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQ 476
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 69/257 (26%)
Query: 8 SPTPFSVLLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDI 59
SP ++V+ +D+ + E+ DL + P + +D + K+S ++E + +
Sbjct: 392 SPVTYNVM-IDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLL 450
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119
FN +++ G + N +++ L ++ D A + G+++EA+ +L + +DG
Sbjct: 451 FNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQR-------GKLDEAFRLLKRMTDDGH 503
Query: 120 KPDVYTYTAIMDGFC-----------------------------------KVGRSNEAME 144
PDV TY+ ++ G C K GR EA E
Sbjct: 504 VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEARE 563
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L+ + G + P +T+N ++ C G+ +A LL M
Sbjct: 564 VLDAMVSSGQS------------------PDVVTYNTLVHGHCRAGQTERARELLSDMVA 605
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ ++ L+ L
Sbjct: 606 RGLAPNVVTYTALVSGL 622
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 23/143 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA------------ 149
G+V++A E+L + ++ PD +Y ++DG CK GR EA+ L +
Sbjct: 226 GQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSP 285
Query: 150 --------IERGVTQN--VVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLL 198
+ G+ QN + +Q+ +++ ++ P + ++ +I L GK++ A L
Sbjct: 286 PSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNL 345
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
+ G PS ++ LI L
Sbjct: 346 FQKLLHSGVTPSTVAYTSLIHGL 368
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 106 EAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---- 160
EA + ++ V D G PD +T+T I+ G CK G+ +EA +++E R + T
Sbjct: 61 EAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFL 120
Query: 161 ---------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ + Q LE+ + + +N V+ ALC ++ AL L M E +IP
Sbjct: 121 AHELCLRGSMERAFQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEK-RIP 177
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 20/100 (20%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAME------------------LLNEAIERGVTQNVV 159
G+ P +T+++ G+C VGR+ EA++ L++ +R T+ V
Sbjct: 5 GIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEAVK 64
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
++Q++ ++ G P + TF ++ LC GK+ +A L++
Sbjct: 65 KMVQVM--VDRGCFPDSFTFTTILCGLCKAGKMDEAELVM 102
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA+ L E +F +K G ++ + L++ + D +K F + G
Sbjct: 623 CKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAG----- 677
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+ PD Y + CK GRS A+E+L E E
Sbjct: 678 -----------ISPDHVVYGTLAAELCKSGRSARALEILREGRE 710
>gi|219885451|gb|ACL53100.1| unknown [Zea mays]
Length = 437
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 21/124 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR+EEA E+L +K+ L PD+YT+T ++DGFCKVGR+ EA + ++AI
Sbjct: 139 VGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEATAIFHDAI---------- 188
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY---EHGKIPSRTSHDML 217
MG P T T+N ++ C G KA LL M + +P +TS ++
Sbjct: 189 --------GMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIV 240
Query: 218 IKKL 221
+ L
Sbjct: 241 LTAL 244
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 34/164 (20%)
Query: 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV---------- 101
P++ER+ + + + +D +VSD+ND+L AL + TAV F +
Sbjct: 4 PVEERVKVLDLLPRDDAALTVSDYNDILSALARAGDHATAVALFRAMPVAPDAHSFATAV 63
Query: 102 ------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G +EA L + G +P V T++A++ CK GR +AME+L+
Sbjct: 64 QCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMC----- 118
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+G P T+N+++ LC VG++ +AL LL
Sbjct: 119 -------------GLGCEPTIRTYNSLVGGLCYVGRLEEALELL 149
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA EM+ + G+ PDV TYT I+D C+ G+ +EA EL ++ IERG + N V
Sbjct: 24 GKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAY 83
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G+ P IT+N ++ LC +GK+ +A M
Sbjct: 84 NALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPS 143
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P +++ L+ L ++
Sbjct: 144 RGYSPDVVAYNGLLDALYKE 163
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------- 168
G +PDV TY+ I+ G CK G+ EA+E++ E E+GV +V T ++ RL
Sbjct: 5 GFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEA 64
Query: 169 --------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
E G T+ +N +I LC I +A LL M G P +++ ++
Sbjct: 65 DELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSG 124
Query: 221 L 221
L
Sbjct: 125 L 125
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 43/229 (18%)
Query: 1 LDISAANSPTPFSVLLVDSPSRSPSAAESLDLKE-------NPRSLQAQRFVDKI-KASP 52
+D A + +S++L R + A L+L E +P L +D + KA
Sbjct: 249 VDSGCAPNGATYSIVL-SGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKK 307
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ + + + K G V +N LL L N V++A+E+
Sbjct: 308 VDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTN----------------LVDKAHELFS 351
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+ ++G PD+ +Y+ +++G CK + ++A L + IER +
Sbjct: 352 TMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKL------------------ 393
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P +TFN ++ LC GK+ +A LL +M EH +P + L+ L
Sbjct: 394 VPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGL 442
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 40/190 (21%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+ + E F+S+ G + V +N LL AL G+V EA
Sbjct: 126 CRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDAL----------------YKEGKVAEA 169
Query: 108 YEML--MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----L 161
+ + M++ + + PD+ TY ++DGFC+V +++EAM+L + I +G + VT L
Sbjct: 170 WGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSIL 229
Query: 162 IQLLQRLEM-------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L ++ M G P T++ V+ C VG + + L L M E
Sbjct: 230 LGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTE---- 285
Query: 209 PSRTSHDMLI 218
R S D+L+
Sbjct: 286 -KRFSPDVLL 294
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 36/183 (19%)
Query: 75 FNDLLMALVMLNEQDTAVKFFS--------------NHLMVG-----RVEEAYEMLMNVK 115
+N L+ + + D A+K F N +++G ++EA EM +
Sbjct: 190 YNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMV 249
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRLE--- 169
+ G P+ TY+ ++ G C+VG +EL E E+ + +V+ +I +L + +
Sbjct: 250 DSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVD 309
Query: 170 -----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+G +P +T+N ++ LC + KA L M ++G P S+ +++
Sbjct: 310 DAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVL 369
Query: 219 KKL 221
L
Sbjct: 370 NGL 372
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 36/203 (17%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------------- 95
E + +F + G +N +L+ L + D A + F
Sbjct: 205 EAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVL 264
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S H VG + E+ + PDV A++D CK + ++A ++L E + G
Sbjct: 265 SGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAV 324
Query: 156 QNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+VVT LL L + G P ++++ V+ LC K+H A +L
Sbjct: 325 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVL 384
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
M E +P + ++L+ L
Sbjct: 385 FDRMIERKLVPDVVTFNILMDGL 407
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV--- 158
G+++EA ++L + + PD T T +M G C+ R++EA+ L +E+G +V
Sbjct: 411 GKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPH 470
Query: 159 -VTLIQLLQRLEMGHI---------------PRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ L L + ++ P +T+ ++ AL G++ +A+ M
Sbjct: 471 NIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQM 530
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
G P +++ L+ L +Q
Sbjct: 531 TGSGCAPDYVAYNTLMNGLRKQ 552
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 102/249 (40%), Gaps = 46/249 (18%)
Query: 16 LVDSPSRSPSAAESLDLKE-------NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
++ ++ E+L++ E NP VD++ +A + E ++F+ + + G
Sbjct: 16 IISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERG 75
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNHLMVGRVEEAY 108
+ + +N L+ L + A K S +G+V EA
Sbjct: 76 CSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAK 135
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN--EAIERGVTQNVV---TLIQ 163
+ ++ + G PDV Y ++D K G+ EA L + +R V +++ TLI
Sbjct: 136 QFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLID 195
Query: 164 LLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
R+E G++P T+T+N+++ L + +A + M + G P
Sbjct: 196 GFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAP 255
Query: 210 SRTSHDMLI 218
+ ++ +++
Sbjct: 256 NGATYSIVL 264
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V A E+L +++N G KP+VY+YT ++DGFCK+G+ +EA +LNE G+ N V
Sbjct: 403 GLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGF 462
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EM G P TFN++I LC V +I AL LL M
Sbjct: 463 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 522
Query: 205 HGKIPSRTSHDMLI 218
G + + +++ LI
Sbjct: 523 EGVVANTVTYNTLI 536
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E ++ N + DG + FN L+ A F H R+ EA
Sbjct: 436 KLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA------------FCKEH----RIPEAV 479
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
E+ + G KPDVYT+ +++ G C+V A+ LL + I GV N VT L+
Sbjct: 480 EIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAF 539
Query: 168 LEMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
L G I IT+N++I+ LC G++ KA L M G PS
Sbjct: 540 LRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSN 599
Query: 212 TSHDMLIKKL 221
S ++LI L
Sbjct: 600 ISCNILINGL 609
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 39/197 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
++ +KE + N + G+ +N L+ L E D A F
Sbjct: 540 LRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSN 599
Query: 96 -SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
S ++++ G VEEA E + G PD+ T+ ++++G C+ GR
Sbjct: 600 ISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGR---------- 649
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
IE G+T + ++L+ I P T+TFN ++ LC G ++ A LLL E G
Sbjct: 650 -IEDGLT--------MFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGF 700
Query: 208 IPSRTSHDMLIKKLDQQ 224
+P+ + +L++ + Q
Sbjct: 701 VPNHRTWSILLQSIIPQ 717
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLI----------QLL 165
+ P ++T+ +M FC V + A+ LL + + G N V TLI + L
Sbjct: 213 IPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEAL 272
Query: 166 QRLE----MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
Q LE MG +P TFN+VI LC +I++A ++ M G P ++ L+ L
Sbjct: 273 QLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGL 332
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV EA ++L + G PD T+ ++ G CK R NEA +++N + RG + +T
Sbjct: 267 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYG 326
Query: 163 QLLQRL-EMGHI------------PRTITFNNVIQALCGVGKIHKALLLLF-LMYEHGKI 208
L+ L ++G + P + FN +I G++ A +L ++ +G +
Sbjct: 327 YLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIV 386
Query: 209 PSRTSHDMLI 218
P +++ LI
Sbjct: 387 PDVCTYNSLI 396
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P TF V++A C V +I AL LL M +HG +P+ + LI L +
Sbjct: 215 PTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSK 264
>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 562
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 33/174 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
LK+ I +FN + + N V FN L+ A GRV+EA L
Sbjct: 292 LKDAIGLFNKMTSENINPDVYTFNILVDAFCK----------------EGRVKEAKNGLA 335
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---- 168
+ G+KPDV TY ++MD +C V N+A + N RGVT NV + ++ R
Sbjct: 336 MMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIK 395
Query: 169 ----------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
EM H P IT++++I LC G+I AL L M++ G+ P
Sbjct: 396 MVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQP 449
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
NP VD K +KE + + K G V +N L+ ++NE + A
Sbjct: 308 NPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKS 367
Query: 94 FF-------------SNHLMVGR------VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F S +M+ R V++A ++ + + + P+V TY++++DG C
Sbjct: 368 IFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLC 427
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
K GR + A+EL +E +RG +++TL + L+ + G P T+ +I LC G++
Sbjct: 428 KSGRISYALELNDEMHDRGQQPDIITLTRQLK--DQGIRPNMFTYTILIDGLCKGGRLED 485
Query: 195 A 195
A
Sbjct: 486 A 486
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 22/110 (20%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVVTLIQLLQRLEMG 171
+K+ G++P+++TYT ++DG CK GR +A + + + +G +T N T++
Sbjct: 458 LKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVM--------- 508
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I C G +A+ LL M ++ IP+ +++++I+ L
Sbjct: 509 -----------IHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIRSL 547
>gi|297733848|emb|CBI15095.3| unnamed protein product [Vitis vinifera]
Length = 815
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 32 LKENPRSLQ--AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
L NP++ +R+V A I IF S+ + G ++ FN +L L +
Sbjct: 132 LGPNPKTFAIITERYVS---AGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCKSKRVE 188
Query: 90 TA----VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
A K F G+++EA+E + +K + DV TYT ++ GF G +A +
Sbjct: 189 MADNKLFKVFRGFFRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRV 248
Query: 146 LNEAIERGVTQNVVT---LIQLL--------------QRLEMGHIPRTITFNNVIQALCG 188
NE I GV +V T IQ+L + L G++P + T+N VI+ LC
Sbjct: 249 FNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCH 308
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
VG++ KA+ + M + P+ ++++I+
Sbjct: 309 VGRMEKAMEFMARMKDDECEPNVQIYNVVIR 339
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 37/161 (22%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD--------------------GFCKVG 137
++ G+ + A ++ ++ G D+ ++ I+D GF + G
Sbjct: 146 YVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGFFRAG 205
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLL------------QRL--EM---GHIPRTITFN 180
+ EA E + +R +VVT ++ QR+ EM G +P T+N
Sbjct: 206 QLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYN 265
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IQ LC + A+ + M G +P+ T+++++I+ L
Sbjct: 266 AFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGL 306
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
+AQR +++ + + +N+ KKD ++S F ++L M N V
Sbjct: 244 KAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNV-V 302
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
VGR+E+A E + +K+D +P+V Y ++ FC E IE+G+
Sbjct: 303 IRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDA-----------EEIEKGL 351
>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 418
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV FN L+ + ++ +G ++E + + ++ G
Sbjct: 158 VFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLDEGFRLKNAMRASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK R +EA L E ++ G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L G P +T+N +I LC G + +A LL M G P + ++ LI
Sbjct: 262 DIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLI 318
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 78/202 (38%), Gaps = 34/202 (16%)
Query: 27 AESLDLKENPRSLQAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
E LD P + +D K L +DI+ + G + V +N L+ L
Sbjct: 230 GEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCK- 288
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
G +++A +L + GLKPD TYT ++DG CK G A EL
Sbjct: 289 ---------------KGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFEL 333
Query: 146 LNEAIERGV-------TQNVVTLIQ----------LLQRLEMGHIPRTITFNNVIQALCG 188
I+ + T + L Q L + L +G P T+ ++ C
Sbjct: 334 RERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCK 393
Query: 189 VGKIHKALLLLFLMYEHGKIPS 210
G + KA LL M +G++P
Sbjct: 394 KGDVKKASELLREMQRNGRVPC 415
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + GLKPD TYT IM+ FCK G +A ELL E G VVT
Sbjct: 360 GRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVPCVVT 418
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V ++ +M+G+ K+G +E L N
Sbjct: 137 YFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNA 196
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
GV +V T L+ + L+ G +P +TF +I C G+
Sbjct: 197 MRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGR 256
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M G P +++ LI L ++
Sbjct: 257 LDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKK 289
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+SI K G SV FN L+ + ++ +G +++ +++ + G
Sbjct: 158 VFDSITKWGLRPSVVSFNTLM----------------NGYIRLGDLDQGFKLKNAMHASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + NEA +L NE +++G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A LL M G P + ++ LI
Sbjct: 262 ETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLI 318
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A ++L ++ GLKPD TYT ++DG CK G + A EL ++ + + V
Sbjct: 290 GDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C + A LL M
Sbjct: 350 TALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQR 409
Query: 205 HGKIPS 210
G +P
Sbjct: 410 QGHVPC 415
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKPD TYT I++ FCK A +LL E +G VVT
Sbjct: 360 GRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418
>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 548
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 33/189 (17%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
S L ID+FN +KK+ N +V FN L+ D K G+V +A
Sbjct: 249 VSKLNYAIDLFNKMKKENINPNVYTFNILV---------DGFCK-------EGKVNDAKV 292
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV---VTLIQLLQ 166
+L + D +KPDV TY ++MDG+C + + N+A ++ + GV NV T++
Sbjct: 293 VLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFC 352
Query: 167 RLEMGH--------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
+++M IP +T++++I LC +G+I AL L+ M++ G+ P+
Sbjct: 353 KIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIV 412
Query: 213 SHDMLIKKL 221
++ ++ L
Sbjct: 413 TYSSILDAL 421
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
V++A +L N+K+ G++PD+YTYT ++ G C+ GR +A + + + +G +V
Sbjct: 426 HVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVY--- 482
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +IQ C G KAL LL M ++G IP+ +++++I L
Sbjct: 483 ---------------AYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSL 526
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 18/120 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+EA + ++ + P+V TY++++DG CK+GR A++L++E +R
Sbjct: 357 VDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDR----------- 405
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
G P +T+++++ ALC + KA+ LL + + G P ++ +LIK L Q
Sbjct: 406 -------GQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQ 458
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 36/196 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN------HL------------- 99
IF I K G + + FN L+ L + A+ F HL
Sbjct: 118 IFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLC 177
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
VGR+ A ++L V ++P+ Y I+D CK N+A +L ++ + + + +V
Sbjct: 178 KVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVF 237
Query: 160 TL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLM 202
T I L +++ +I P TFN ++ C GK++ A ++L +M
Sbjct: 238 TYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIM 297
Query: 203 YEHGKIPSRTSHDMLI 218
+ P +++ L+
Sbjct: 298 MKDDIKPDVVTYNSLM 313
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+E+A + ++ G DVY YT ++ GFC G ++A+ LL++ + G N T
Sbjct: 460 GRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKT 518
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 18/128 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H + A E L + + PDV+TY ++DG CK ++++A E+L+E ++RGVT
Sbjct: 235 GHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVT- 293
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P T+TFN+++ LC GK +A LL +M E PS +++
Sbjct: 294 -----------------PDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNT 336
Query: 217 LIKKLDQQ 224
LI L +Q
Sbjct: 337 LISGLCKQ 344
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-- 161
V+ A +++ + G PDV TY+ + DG CK GR +EA EL+ E +G T N+VT
Sbjct: 347 VDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNT 406
Query: 162 --------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+LL+ L G +P +T+ ++ LC G++ KAL ++ M + G
Sbjct: 407 LIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRG 466
Query: 207 KIPSRTSHDMLIKKL 221
PS ++ L++ L
Sbjct: 467 CTPSVITYTALMEGL 481
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 105/216 (48%), Gaps = 31/216 (14%)
Query: 34 ENPRSLQAQRFVDKIKASPLKERIDIFNSIK----KDGTNWSVSD-FNDLLMALVMLN-- 86
++ R+ +AQ+ VD I+ +P ID++N++ K+G + + F D+ + N
Sbjct: 518 KSSRTKEAQKVVDGIRGTPY---IDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIK 574
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+ + H G+V+EA+ L ++ + G PDV +Y I+DG K + EA ++L
Sbjct: 575 TYNIVMDGLCKH---GKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVL 631
Query: 147 NEAIERGVTQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGV 189
++ I+ G+ + VT L+ + ++ G P +T+N +I L
Sbjct: 632 DQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQT 691
Query: 190 GKIHKALLLLFLMYEHGKIPSR-TSHDMLIKKLDQQ 224
++ A L+ M +G + S T+++ +I +L ++
Sbjct: 692 NRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKE 727
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 18/93 (19%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ E+AYE+L ++ + G PDV TYT I+DG CK GR ++A++++ ++RG T
Sbjct: 416 KTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCT------- 468
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
P IT+ +++ LC G++ +A
Sbjct: 469 -----------PSVITYTALMEGLCRTGRVDEA 490
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 49/169 (28%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+++A +M+ + G P V TYTA+M+G C+ GR +EA + E + + T + +
Sbjct: 450 GRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAY 509
Query: 162 IQLLQ--------------------------------------RLE-----------MGH 172
+ L+ RL+ G
Sbjct: 510 VSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGC 569
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P T+N V+ LC GK+ +A L M+ G +P S++++I L
Sbjct: 570 VPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGL 618
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ E A+ +L + +P TY ++ G CK + A +L++E + G +VVT
Sbjct: 310 GKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTY 369
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L L EM G P +T+N +I LC K KA LL +
Sbjct: 370 SILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVS 429
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P ++ +++ L ++
Sbjct: 430 SGFVPDVVTYTIIVDGLCKE 449
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
GL +T+ ++D F K R +EA+ LL ++RG + P I
Sbjct: 812 GLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCS------------------PSVI 853
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
T+N VI LC + K+ KA L M G + S S+ +LI L Q
Sbjct: 854 TYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQ 900
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 18/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA----IERGVTQN 157
G +++A ++ ++ G++ + TY +D CK GR +EA LL+E E T
Sbjct: 728 GCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTV 787
Query: 158 VVTLIQLLQRLEMGHIPRTI-----------TFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ L + Q + R + TFN +I A ++ +AL LL LM + G
Sbjct: 788 IIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRG 847
Query: 207 KIPSRTSHDMLIK---KLDQ 223
PS +++M+I KLD+
Sbjct: 848 CSPSVITYNMVITCLCKLDK 867
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +L + G P V TY ++ CK+ + ++A EL +E RG+
Sbjct: 832 RLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGI-------- 883
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+ ++++ +I LCG G+ +AL +L
Sbjct: 884 ----------VASSVSYTVLIYGLCGQGRGKEALQVL 910
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 34/182 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
KAS KE + + + + G +N L+ D AV N + G
Sbjct: 619 FKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDN 678
Query: 103 --------------RVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
R+ +AYE++ ++N + TY I+D CK G +A+ L++
Sbjct: 679 VTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMD 738
Query: 148 EAIERGVTQNVVTLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIH 193
GV N VT + RL EM + +++ VI LC ++
Sbjct: 739 HMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLD 798
Query: 194 KA 195
+A
Sbjct: 799 RA 800
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ +E +++ G PD YTY ++ C++ + ++A +L++A RG V++
Sbjct: 143 RIPAMFERMLDA---GYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPE-VSVY 198
Query: 163 QLLQR--LEMGHI------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+L R + G + P I +N +I C AL L M E
Sbjct: 199 TILTRAFCKTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVA 258
Query: 209 PSRTSHDMLIKKL 221
P ++++LI L
Sbjct: 259 PDVFTYNILIDGL 271
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 36/199 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------------------NHL 99
+F ++ + G V +N L+ ++ D A K F+ H
Sbjct: 172 VFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHC 231
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GR++EA +L + + L PD++TY+ +M GFC+VGR EA ELL E G+ N++
Sbjct: 232 KSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLI 291
Query: 160 TLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLM 202
T +L L + GH+ P + +I+ +C GK+ A L +
Sbjct: 292 TYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNL 351
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ G P+ ++ ++I L
Sbjct: 352 FVKGIQPTVVTYTVMISGL 370
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EA + + +G+ PDV+TY++I+ GFC +GR NEA L + +ER V N VT
Sbjct: 96 VTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTI 155
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L E G P T+N ++ C ++ +A L +M G
Sbjct: 156 LIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKG 215
Query: 207 KIPSRTSHDMLI 218
P+ S+++LI
Sbjct: 216 CAPNVRSYNILI 227
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 24/162 (14%)
Query: 85 LNEQDTAVKFFSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
L Q T V F N L+ G ++ +A ++ + G +PDV TY+ I++G CK+G +
Sbjct: 4 LGLQPTLVTF--NTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNT 61
Query: 140 NEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNV 182
A++LL + E+G NVV ++ L EM G P T++++
Sbjct: 62 TMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSI 121
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ C +G++++A L M E IP++ + +LI L ++
Sbjct: 122 LHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKK 163
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA+E+L ++ ++P+++ YT +++G C G+ A EL + +G+ VVT
Sbjct: 304 GHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTY 363
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM G +P + T+N +IQ G A+ L+ M
Sbjct: 364 TVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVG 423
Query: 205 HGKIPSRTSHDML 217
G ++ ML
Sbjct: 424 KGFSADSSTFRML 436
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H + G++E+A +L ++K GL PDV +Y+ ++ GFC+ +EA+ + E +E+G+
Sbjct: 423 NGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIK 482
Query: 156 QNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+ +T L+Q L +G P T+ +I A C G + KAL L
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQQ 224
M E G +P ++ +LI L++Q
Sbjct: 543 HNEMVEKGVLPDVVTYSVLINGLNKQ 568
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EAY +L + ++G P V TY A+++G C G+ +A+ +L + E+G++ +VV+
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L + +E G P TIT++++IQ C + +A L M
Sbjct: 454 STVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513
Query: 205 HGKIPSRTSHDMLI 218
G P ++ LI
Sbjct: 514 VGLPPDEFTYTALI 527
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
++++ +++L ++ GL+P++ +Y +++G C+ GR E +L E RG + + VT
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYN 314
Query: 161 ---------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + L G P IT+ ++I ++C G +++A+ L M
Sbjct: 315 TLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVR 374
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P+ ++ L+ Q+
Sbjct: 375 GLCPNERTYTTLVDGFSQK 393
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +A M + GL P V TYT+++ CK G N AME L++ RG+ N T
Sbjct: 324 GNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY 383
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EM G P +T+N +I C GK+ A+ +L M E
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443
Query: 205 HGKIPSRTSHDMLI 218
G P S+ ++
Sbjct: 444 KGLSPDVVSYSTVL 457
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + ++ G P+V TY ++DG+CK+ + ++ +LL +G+ N+++
Sbjct: 219 GNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISY 278
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM G+ +T+N +I+ C G H+AL++ M
Sbjct: 279 NVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR 338
Query: 205 HGKIPSRTSHDMLIKKL 221
HG PS ++ LI +
Sbjct: 339 HGLTPSVITYTSLIHSM 355
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------I 162
+ P+V+TY ++ GFC G + A+ L ++ +G NVVT
Sbjct: 201 VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGF 260
Query: 163 QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+LL+ + + G P I++N VI LC G++ + +L M G +++ LIK
Sbjct: 261 KLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIK 318
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS-NEAMELLN 147
D VK +S + +++A ++ + G P V +Y A++D + R+ + A +
Sbjct: 138 DLVVKSYSR---LSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194
Query: 148 EAIERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVG 190
E +E V+ NV T + L ++E G +P +T+N +I C +
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
KI LL M G P+ S++++I L ++
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVINGLCRE 288
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 32/167 (19%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL--- 146
T + + M G +E+A ++ + G+ PDV TY+ +++G K R+ EA LL
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581
Query: 147 --NEAIERGVT-------------QNVVTLI-------------QLLQR-LEMGHIPRTI 177
E++ VT ++VV+LI Q+ + L H P
Sbjct: 582 FYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGT 641
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+N +I C G I KA L M + G + + L+K L ++
Sbjct: 642 AYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKE 688
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
E + V M G + EA ++ ++ KPD Y ++ G C+ G +A L
Sbjct: 604 EFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLY 663
Query: 147 NEAIERGVTQNVVTLIQLLQRL 168
E ++ G + VT+I L++ L
Sbjct: 664 KEMVKSGFLLHTVTVIALVKAL 685
>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
Length = 704
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+ L++ +++ N +K G +WS+ + L+ A G+++EA
Sbjct: 188 CEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCK----------------AGKMDEA 231
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ- 166
L +K GL+ D+ YT+++ GFC G + L +E +ERG + +T L++
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRG 291
Query: 167 ----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+E G P T+ +I LCGVGK +AL L LM E + P+
Sbjct: 292 FCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPN 351
Query: 211 RTSHDMLIKKL 221
+++++I KL
Sbjct: 352 AVTYNIIINKL 362
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 77/145 (53%), Gaps = 23/145 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-------- 152
+G+++EA E+ + G++P+VYTYT ++DG C VG++ EA++ LN IE+
Sbjct: 295 LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVT 354
Query: 153 -----------GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
G+ + V +++L+++ P IT+N ++ LC G + +A LL+L
Sbjct: 355 YNIIINKLCKDGLVADAVEIVELMKKRRTR--PDNITYNILLGGLCAKGDLDEASKLLYL 412
Query: 202 MYEHGKI--PSRTSHDMLIKKLDQQ 224
M + P S++ LI L ++
Sbjct: 413 MLKDSSYTDPDVISYNALIHGLCKE 437
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL---- 161
+A +L ++ + L PDV++Y ++ GFC+ +A+EL NE G + ++VT
Sbjct: 160 KAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILI 219
Query: 162 ------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L+ ++ MG + + ++I+ C G++ + L + E G
Sbjct: 220 DAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDS 279
Query: 209 PSRTSHDMLIK 219
P +++ LI+
Sbjct: 280 PCAITYNTLIR 290
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
D DLL+ + ++ T ++ L G V +A E+ + + + + TYTA++DGF
Sbjct: 445 DIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193
CK G N A LL + V+ +Q P +N ++ +LC G +
Sbjct: 505 CKTGMLNVAKGLL--------CKMRVSELQ----------PSVFDYNCLLSSLCKEGSLD 546
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLI 218
+A L M P S +++I
Sbjct: 547 QAWRLFEEMQRDNNFPDVVSFNIMI 571
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 19/102 (18%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFS-------------------NHLMVGRVEEAYEML 111
SV D+N LL +L D A + F L G ++ A +L
Sbjct: 528 SVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLL 587
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + GL PD++TY+ +++ F K+G +EA+ ++ ++ G
Sbjct: 588 VGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSG 629
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 32/209 (15%)
Query: 34 ENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV 92
E P ++ ++K+ K + + ++I +KK T +N LL L + D A
Sbjct: 348 EEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEAS 407
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
K +LM+ + +Y PDV +Y A++ G CK R ++A+++ + +E+
Sbjct: 408 KLL--YLMLK--DSSYT----------DPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453
Query: 153 -GVTQNVVTLIQLLQRLEMGHIPRTI----------------TFNNVIQALCGVGKIHKA 195
G V T I L L+ G + + + T+ +I C G ++ A
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LL M PS ++ L+ L ++
Sbjct: 514 KGLLCKMRVSELQPSVFDYNCLLSSLCKE 542
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K ++E + + I +G +++ +N LL L + GR+EEA
Sbjct: 46 KNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKM----------------GRLEEAI 89
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++L + ++G PDV TYT+++DG K RS EA +L E RG+ + V L++ L
Sbjct: 90 DLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGL 149
Query: 169 -----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
G +P +T + +I LC G+I A+ + M G P+
Sbjct: 150 LQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNE 209
Query: 212 TSHDMLIKKL 221
+ LI L
Sbjct: 210 VVYSALIHGL 219
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 36/201 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
KA + + IF S++ G + ++ L+ L + D A++ +
Sbjct: 185 CKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT 244
Query: 98 ---HLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++++ G V A + G KPDVYTY ++ GFCK G ++ A + ++
Sbjct: 245 ITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDD 304
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
+ NVVT L+ L E G P + +++++ LC GK
Sbjct: 305 MSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGK 364
Query: 192 IHKALLLLFLMYEHGKIPSRT 212
+ +L M G S+T
Sbjct: 365 LEGGCMLFDEMERSGVANSQT 385
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ A + +++ GL P+ Y+A++ G CK + + A+E+L + + T
Sbjct: 188 GRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCT------ 241
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P TIT+N +I LC G + A M E G P ++++LI
Sbjct: 242 ------------PDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILI 286
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A+ + +G D++TYT I+D K + EA+ L+ + G T
Sbjct: 13 GMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCT------ 66
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+N ++ LC +G++ +A+ LL + ++G P ++ LI L
Sbjct: 67 ------------PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGL 114
Query: 222 DQQ 224
++
Sbjct: 115 GKK 117
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN--------------- 157
++K G PD + Y++++DG CK G+ L +E GV +
Sbjct: 339 HMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKANR 398
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
V + L + +P +N++I AL GK+++
Sbjct: 399 VDEAVSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEG 436
>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1245
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 37/228 (16%)
Query: 28 ESLDLKENPRSLQAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E L +P + +D I KE + +F+ ++ G + + LL L
Sbjct: 323 EMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNA 382
Query: 87 EQDTAVKFF----SNHLMVGRV---------------EEAYEMLMNVKNDGLKPDVYTYT 127
E D A F+ N + VGR+ +EA ML + DG+ PD+ TY+
Sbjct: 383 EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYS 442
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRLEM-------------- 170
A+++GFC+VGR A E++ G++ N + TLI R+
Sbjct: 443 ALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILE 502
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G+ P TFN ++ +LC GK+ +A + M G +P+ S D LI
Sbjct: 503 GNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLI 550
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++ ++ ++ G P + TY ++ +CK GR A+ELL+ +GV +V T
Sbjct: 207 GSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTY 266
Query: 162 IQLLQ------RLEMGHI-----------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ R G++ P +T+N ++ GK+ A LL M
Sbjct: 267 NMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLT 326
Query: 205 HGKIPSRTSHDMLI 218
G P+ + + LI
Sbjct: 327 FGLSPNHVTFNALI 340
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ LKE I I+ ++ +G FN L+ +L G+V EA
Sbjct: 485 RMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCK----------------AGKVAEAE 528
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E + + +DG+ P+ ++ +++G+ G +A + +E + G T LL+ L
Sbjct: 529 EFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGL 588
Query: 169 EMG--------------HIPR---TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
G ++P T+ N +I A+C G + KA+ L M + +P
Sbjct: 589 CKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDS 648
Query: 212 TSHDMLIKKLDQQ 224
++ LI L ++
Sbjct: 649 FTYTSLISGLCRK 661
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 17/141 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+L G ++++ E+ + G P VYT AI+ K L E ++R + +
Sbjct: 133 YLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPD 192
Query: 158 VVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V T L+Q++E G+ P +T+N V+ C G+ A+ LL
Sbjct: 193 VATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G +++MLI L
Sbjct: 253 HMNLKGVNADVCTYNMLIHDL 273
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVT 160
G +++A + + + PD +TYT+++ G C+ G++ A+ EA RG + N V
Sbjct: 627 GNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVM 686
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ Q ++G +T N +I +GKI K LLF M
Sbjct: 687 YTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMG 746
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+ P+ T++++L+ ++
Sbjct: 747 NQNQGPNLTTYNILLHGYSKR 767
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA E+ + + N GLK D+ +Y ++ G C G A EL E G NV T
Sbjct: 978 GNVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTY 1037
Query: 162 IQLL 165
L+
Sbjct: 1038 KALV 1041
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 80/209 (38%), Gaps = 42/209 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ-------------------- 88
K K I++ + + G N V +N L+ L N
Sbjct: 240 KKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEV 299
Query: 89 --DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+T + FSN G+V A ++L + GL P+ T+ A++DG G EA+++
Sbjct: 300 TYNTLLNGFSNE---GKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMF 356
Query: 147 NEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGV 189
+ +G+ V+ LL L G IT+ +I LC
Sbjct: 357 HMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKN 416
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G + +A+++L M + G P ++ LI
Sbjct: 417 GFLDEAVVMLNEMSKDGIDPDIVTYSALI 445
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+ +EA +L ++ L P + ++T +M FCK G EA+EL R V N
Sbjct: 942 CGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALEL------RVVMSNCGL 995
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+ L +++N +I LC G + A L M G + + T++ L+
Sbjct: 996 KLDL------------VSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGG 1043
Query: 221 LDQQ 224
+ Q
Sbjct: 1044 ILSQ 1047
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 26/174 (14%)
Query: 69 NWSVSDFNDLLMALVMLNEQDTAVKFFS----NHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
NW+ D +++ +L + +++T S NH R +E+ +L + G+ P+
Sbjct: 841 NWAF-DMVNVMTSLGISLDKNTCDAIVSVLNRNH----RFQESRMVLHEMSKQGISPESR 895
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVV--TLIQLLQR-------------- 167
Y +++G C+VG A + E I + NV +++ L +
Sbjct: 896 KYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSM 955
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
L+M +P +F ++ C G + +AL L +M G S+++LI L
Sbjct: 956 LKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGL 1009
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++E+ +++L + N P++ TY ++ G+ K + + L I G+ + +T
Sbjct: 732 MGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLT 791
Query: 161 LIQLL------QRLEMG------HIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMY 203
++ LE+G I R + TFN +I C G+I+ A ++ +M
Sbjct: 792 CYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMT 851
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
G + + D ++ L++
Sbjct: 852 SLGISLDKNTCDAIVSVLNR 871
>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
Length = 1274
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 28 ESLDLKENPRSLQAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E L +P + +D I KE + +F ++ G S + LL L
Sbjct: 323 EMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNA 382
Query: 87 EQDTAVKFF----SNHLMVGRV---------------EEAYEMLMNVKNDGLKPDVYTYT 127
E D A F+ N + VGR+ +EA +L + DG+ PD+ TY+
Sbjct: 383 EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYS 442
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRLEM-------------- 170
A+++GFCKVGR A E++ G++ N + TLI R+
Sbjct: 443 ALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILE 502
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
GH TFN ++ +LC GK+ +A + M G +P+ S D LI
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------- 99
++ +++ ++IF + G N SV N +L ++V E + F L
Sbjct: 134 LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDV 193
Query: 100 -----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G E++ ++ ++ G P + TY ++ +CK GR A+ELL+
Sbjct: 194 ATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 253
Query: 149 AIERGVTQNVVTLIQLLQ------RLEMGHI-----------PRTITFNNVIQALCGVGK 191
+GV +V T L+ R+ G++ P +T+N +I GK
Sbjct: 254 MKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGK 313
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A LL M G P+ + + LI
Sbjct: 314 VLIASQLLNEMLSFGLSPNHVTFNALI 340
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR + A E+L ++K+ G+ DV TY ++ C+ R + LL + +R + N VT
Sbjct: 242 GRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTY 301
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G P +TFN +I G +AL + ++M
Sbjct: 302 NTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEA 361
Query: 205 HGKIPSRTSHDMLIKKL 221
G PS S+ +L+ L
Sbjct: 362 KGLTPSEVSYGVLLDGL 378
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+L G ++++ E+ + G P VYT AI+ K G L E ++R + +
Sbjct: 133 YLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPD 192
Query: 158 VVT---LIQ-------------LLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V T LI L+Q++E G+ P +T+N V+ C G+ A+ LL
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G +++MLI L
Sbjct: 253 HMKSKGVDADVCTYNMLIHDL 273
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ LKE I I+ ++ +G FN L+ +L G+V EA
Sbjct: 485 RMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCK----------------AGKVAEAE 528
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E + + +DG+ P+ ++ +++G+ G +A + +E + G T LL+ L
Sbjct: 529 EFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGL 588
Query: 169 -EMGHIPR----------------TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ GH+ T+ +N ++ A+C G + KA+ L M + +P
Sbjct: 589 CKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDS 648
Query: 212 TSHDMLIKKLDQQ 224
++ LI L ++
Sbjct: 649 YTYTSLISGLCRK 661
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVT 160
G + +A + + + PD YTYT+++ G C+ G++ A+ EA RG V N V
Sbjct: 627 GNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVM 686
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ Q +GH P +T N +I +GKI K LL M
Sbjct: 687 YTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMG 746
Query: 204 EHGKIPSRTSHDMLI 218
P+ T++++L+
Sbjct: 747 NQNGGPNLTTYNILL 761
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 42/209 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE--------------------- 87
K K I++ + +K G + V +N L+ L N
Sbjct: 240 KKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV 299
Query: 88 -QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+T + FSN G+V A ++L + + GL P+ T+ A++DG G EA+++
Sbjct: 300 TYNTLINGFSNE---GKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF 356
Query: 147 NEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGV 189
+G+T + V+ LL L G IT+ +I LC
Sbjct: 357 YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKN 416
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G + +A++LL M + G P ++ LI
Sbjct: 417 GFLDEAVVLLNEMSKDGIDPDIVTYSALI 445
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 69 NWSVSDFNDLLMALVMLNEQDTAVKFFS----NHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
NW+ D ++ +L + ++DT S NH R +E+ +L + G+ P+
Sbjct: 841 NWAF-DLVKVMTSLGISLDKDTCDAMVSVLNRNH----RFQESRMVLHEMSKQGISPESR 895
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVV--TLIQLLQR-------------- 167
Y +++G C+VG A + E I + NV +++ L +
Sbjct: 896 KYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFM 955
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
L+M +P +F ++ C G + +AL L +M G S+++LI L
Sbjct: 956 LKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGL 1009
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA E+ + + N GLK D+ +Y ++ G C G A EL E G N T
Sbjct: 978 GNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTY 1037
Query: 162 IQLLQRL 168
L++ L
Sbjct: 1038 KALIRGL 1044
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A E+L ++K G PDV TYT ++DG CK + A E+L E ++ G N+VT
Sbjct: 206 RVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYN 265
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL L +M G P +T+ +I LC VG++ A +L M +
Sbjct: 266 SLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDK 325
Query: 206 GKIPSRTSHDMLIKKL 221
G P ++MLI L
Sbjct: 326 GGTPDLMIYNMLINGL 341
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +L+ VK+ G PDV Y+ ++DG CK G+ +EA +L G +VVT
Sbjct: 381 RLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYS 440
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L MG P T+T+N++I+ LC + + +A+ L+ M
Sbjct: 441 TLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS 500
Query: 206 GKIPSRTSHDMLIKKL 221
PS ++++LI +
Sbjct: 501 NCAPSAVTYNILIHGM 516
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 43/216 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K L + + I + ++ G +V +N L+ L NE D A + F
Sbjct: 91 KEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMV 150
Query: 97 --NHLM-----VGRVEEAYEMLMNV-------KNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
N L+ G++E A + + +D P+V TY+ ++DG CK R ++A
Sbjct: 151 TYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQA 210
Query: 143 MELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQA 185
+ELL RG + +V+T L+ + L+ G +P +T+N+++
Sbjct: 211 VELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHG 270
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LC ++ AL L+ M G P+ ++ LI L
Sbjct: 271 LCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 306
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 44/202 (21%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA + E D++ + DG + V ++ L+ L GRV+EA
Sbjct: 412 CKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCK----------------AGRVDEA 455
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER------GVTQNVVTL 161
+ +L + G P TY +++ G C + +EA+EL+ E +ER VT N+ L
Sbjct: 456 HLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEE-MERSNCAPSAVTYNI--L 512
Query: 162 IQLLQRLEM-------------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
I + R+E G TI ++++I LC G++ +AL M
Sbjct: 513 IHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEM 572
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
++G IP ++ +L++ L +
Sbjct: 573 IDNGVIPDHITYSILLEGLKKS 594
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRV++A ML ++ + G PD+ Y +++G CK + +E++ LL A+ G+ +VVT
Sbjct: 309 VGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVT 368
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L G P I ++ +I LC GK+ +A L +M
Sbjct: 369 YSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMA 428
Query: 204 EHGKIPSRTSHDMLIKKL 221
G ++ LI L
Sbjct: 429 GDGCDADVVTYSTLIDGL 446
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 35/204 (17%)
Query: 16 LVDSPSRSPSAAESLDLKE-------NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
L+D ++ E+ DL E + + +D + KA + E + + + G
Sbjct: 407 LIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 466
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMVG-----RVEEAY 108
T S +N L+ L LN D A++ N L+ G RV+ A
Sbjct: 467 TPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAV 526
Query: 109 EMLMNVKN-----DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+L K G D Y++++DG CK GR EA++ E I+ GV + +T
Sbjct: 527 VLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSI 586
Query: 164 LLQRLEMG---HIPRTITFNNVIQ 184
LL+ L+ H R + + ++Q
Sbjct: 587 LLEGLKKSKDLHELRHLVLDQMVQ 610
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----------- 168
+PDVYTY A++ GFC+ G ++A +E + + NV L+ L
Sbjct: 6 QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65
Query: 169 ------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G + T+ + ++ L ++ +AL +L M +HG P+ +++ LI L
Sbjct: 66 CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 23/131 (17%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R +A ++ G+ D YTA++ G K R ++A+ +L+E + G NVVT
Sbjct: 59 RSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYN 118
Query: 163 QLLQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L M + P +T+N ++ L GK+ +A+ L M +
Sbjct: 119 SLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLD- 177
Query: 206 GKIPSRTSHDM 216
R SHDM
Sbjct: 178 -----RRSHDM 183
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ L P+V+ + ++DG CK RS +A+ G+ + V
Sbjct: 23 GEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIY 82
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L EM G P +T+N++I LC + +A L M
Sbjct: 83 TALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKS 142
Query: 205 HGKIPSRTSHDMLIKKL 221
PS +++ L+ L
Sbjct: 143 VECSPSMVTYNTLLDGL 159
>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 793
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA +++++ + G PDV TYTAI+DGFC++GR +EA ++L + + G N V+
Sbjct: 425 GRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSY 484
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L E P IT+ V+ L GK+ +A L M E
Sbjct: 485 TALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVE 544
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G P+ ++LI+ L Q
Sbjct: 545 KGFFPTPVEINLLIQSLCQ 563
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + S H G ++A L ++ G D Y+AI+ FC+ GR +EA L+ +
Sbjct: 380 NTLIHMLSKH---GHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVID 436
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
RG P +T+ ++ C +G+I +A +L MY+HG
Sbjct: 437 MYSRGCN------------------PDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCK 478
Query: 209 PSRTSHDMLIKKL 221
P+ S+ L+ L
Sbjct: 479 PNTVSYTALLNGL 491
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G +E A +L ++ G PD TYTA+ D K GR +EA EL+ + + +G+ VT
Sbjct: 599 IGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVT 658
Query: 161 LIQLLQRL-EMGHI--------------PRTITFNNVIQALCGVGKIHKALLLLF-LMYE 204
++ R + G + P +N VI+ LC G + +A LL ++
Sbjct: 659 YRSVIHRYSQWGRVDDMLNLLEKMLKRQPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRT 718
Query: 205 HGKIPSRTSHDML 217
K+ + T H ++
Sbjct: 719 ASKVDANTCHVLM 731
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L+ + + ++K G S+S N + LV G++E+A
Sbjct: 247 RAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVK----------------GGKLEKAL 290
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ L ++ G+KPD+ TY +++ G+C + R +A+EL+ +G
Sbjct: 291 KFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCP------------- 337
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM-YEHGKIPSRTSHDMLIKKLDQQ 224
P +++ V+ LC KI + L+ M + IP + +++ LI L +
Sbjct: 338 -----PDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKH 389
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V EA + L N G +V +T ++ GFC++G A+ +L++ G + VT
Sbjct: 566 KVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYT 625
Query: 163 QL-----------------LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L ++ L G P +T+ +VI G++ L LL M +
Sbjct: 626 ALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLK- 684
Query: 206 GKIPSRTSHDMLIKKL 221
+ P RT ++ +I+KL
Sbjct: 685 -RQPFRTVYNQVIEKL 699
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A+ + ++ G+ PD++TY ++DGFC GR +EA LL E +ER + NVVT
Sbjct: 263 GRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTY 322
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G IP TIT+N++I C ++ A + ++M
Sbjct: 323 SALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMAT 382
Query: 205 HGKIPSRTSHDMLI 218
G P + + LI
Sbjct: 383 KGCSPDVFTFNTLI 396
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 97/242 (40%), Gaps = 39/242 (16%)
Query: 14 VLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKI--KASPLKERIDIFNSIKKDGTNWS 71
V+ ++ P S + ++ K+ P + + + K S L + F I K G
Sbjct: 87 VVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPD 146
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMV-----------------GRVEEAYEMLMNV 114
V F+ LL L + + A+ F H M GRV EA +L +
Sbjct: 147 VVTFSTLLHGLCVEDRVSEALDLF--HQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRM 204
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVTLIQLLQRL----- 168
DGL+P+ TY I+DG CK+G + A+ LL + E + NVV ++ L
Sbjct: 205 VEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGR 264
Query: 169 ------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
E G P T+N +I C G+ +A LL M E P+ ++
Sbjct: 265 HSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSA 324
Query: 217 LI 218
LI
Sbjct: 325 LI 326
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M ++ + PDV T+ ++ G+CK GR ++ +EL E RG+ + +T I
Sbjct: 555 RLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYI 614
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P TIT +++ L ++ +A+ +L
Sbjct: 615 TLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAML 668
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 34/214 (15%)
Query: 27 AESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
ES + SL+ + +IK L++ ID+F+ + + SV DFN L+ +V +
Sbjct: 34 GESGEAGFRGESLKLRSGFHEIKG--LEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRME 91
Query: 87 EQDTAVKFFSN-------------------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
D + + ++ A + G +PDV T++
Sbjct: 92 RPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFS 151
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQ------------NVVTLIQLLQRL-EMGHIP 174
++ G C R +EA++L ++ V VV + LL R+ E G P
Sbjct: 152 TLLHGLCVEDRVSEALDLFHQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQP 211
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
IT+ ++ +C +G AL LL M E I
Sbjct: 212 NQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHI 245
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 28/150 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++ E+L + GL D TY ++ GFC VG N A++L + I GV ++VT
Sbjct: 404 RIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCN 463
Query: 163 QLLQ----------RLEM------------------GHIPRTITFNNVIQALCGVGKIHK 194
LL LEM G P T+N +I L GK +
Sbjct: 464 TLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLE 523
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G +P+ ++ +I L +Q
Sbjct: 524 AEELYKEMPHRGIVPNTITYSSMINGLCKQ 553
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K S L E +F+S+ + V FN L+ S + GRV++
Sbjct: 552 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLV----------------SGYCKAGRVDDGL 595
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + G+ D TY ++ GF KVG N A+++ E I GV + +T+ +L L
Sbjct: 596 ELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVL 655
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 28/145 (19%)
Query: 102 GRVEEAYEMLMNVKN-----------DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
G++++A EM ++ +G++PDV TY ++ G G+ EA EL E
Sbjct: 473 GKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMP 532
Query: 151 ERGVTQNVVTLIQLLQRL--------------EMG---HIPRTITFNNVIQALCGVGKIH 193
RG+ N +T ++ L MG P +TFN ++ C G++
Sbjct: 533 HRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVD 592
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLI 218
L L M G + ++ LI
Sbjct: 593 DGLELFCEMGRRGIVADAITYITLI 617
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 30/125 (24%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER------- 152
+VG + A ++ + + G+ PD+ T ++DG C G+ +A+E+ +A+++
Sbjct: 436 LVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMF-KAMQKSKMDLDA 494
Query: 153 -----GVTQNVVTLIQLLQRL--------------EMGH---IPRTITFNNVIQALCGVG 190
GV +V T L+ L EM H +P TIT++++I LC
Sbjct: 495 SRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQS 554
Query: 191 KIHKA 195
++ +A
Sbjct: 555 RLDEA 559
>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
Length = 567
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 33/180 (18%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFS---------------NHLM-VGRVEEAYEMLMNVK 115
V +N + L + D A KF + N L G ++ A ML ++
Sbjct: 182 VVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMS 241
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE-MGHI- 173
N G PDV TY++++DGFCK G AM LL+ ++ G N+V LL L +GHI
Sbjct: 242 NRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIG 301
Query: 174 ---------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +++N I LC ++ KA + M E G P+ +S+ MLI
Sbjct: 302 KAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLI 361
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R +A ++L +++ G P++YTY I++G C+ + +EA ++L E RG +VVT
Sbjct: 127 RTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYN 186
Query: 163 QLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
++ L M P +++ VI LC G + A +L M G
Sbjct: 187 SFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCT 246
Query: 209 PSRTSHDMLI 218
P ++ LI
Sbjct: 247 PDVVTYSSLI 256
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 17/107 (15%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A++ L + + P V TYT I+DG CK R+ +A++LL+E ++G + N+ T ++
Sbjct: 95 QAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIV 154
Query: 166 QRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKA 195
+ L EM G+ P +T+N+ I+ LC ++ +A
Sbjct: 155 EGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEA 201
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 29/180 (16%)
Query: 25 SAAESLDLKEN----PRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLL 79
SA+ LD N P + +D K ++ + + +S+ K G ++ +N LL
Sbjct: 232 SASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLL 291
Query: 80 MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
AL L G + +A +ML+ ++ G PDV +Y A +DG CK R
Sbjct: 292 GALHRL----------------GHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERV 335
Query: 140 NEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+A + + +ERG T N + L I + + ++ LC G+ +A L
Sbjct: 336 KKAKAVFDRMVERGCTPNASSYSML--------IVDILLYTVLLDGLCKGGRFDEACALF 387
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 33/196 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFN----DLLMALVMLNEQDTAVKFFSNHLMVGR 103
KA +K+ +F+ + + G + S ++ D+L+ V+L+ GR
Sbjct: 330 CKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKG----------GR 379
Query: 104 VEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
+EA + V ++ + +PDV+ Y ++D CK + ++A+++ + +E+ NVVT
Sbjct: 380 FDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC-NVVTWN 438
Query: 162 ----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL ++ G IP +T+ ++ A+C GK AL L +
Sbjct: 439 ILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKG 498
Query: 206 GKIPSRTSHDMLIKKL 221
G +P ++ LI L
Sbjct: 499 GCVPDVVTYSALITGL 514
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 36/191 (18%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------LMVG-----RVEEA 107
G +V +N LL+ L + D A F L+ G ++E+A
Sbjct: 2 GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++L +K G PD Y A++ G+ K +A + L E ++ VVT ++
Sbjct: 62 RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L + G P T+N +++ LC K+ +A +L M G P
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPD 181
Query: 211 RTSHDMLIKKL 221
+++ IK L
Sbjct: 182 VVTYNSFIKGL 192
>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1136
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 28 ESLDLKENPRSLQAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E L +P + +D I KE + +F ++ G S + LL L
Sbjct: 363 EMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNA 422
Query: 87 EQDTAVKFF----SNHLMVGRV---------------EEAYEMLMNVKNDGLKPDVYTYT 127
E D A F+ N + VGR+ +EA +L + DG+ PD+ TY+
Sbjct: 423 EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYS 482
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRLEM-------------- 170
A+++GFCKVGR A E++ G++ N + TLI R+
Sbjct: 483 ALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILE 542
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
GH TFN ++ +LC GK+ +A + M G +P+ S D LI
Sbjct: 543 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 590
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------- 99
++ +++ ++IF + G N SV N +L ++V E + F L
Sbjct: 174 LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDV 233
Query: 100 -----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G E++ ++ ++ G P + TY ++ +CK GR A+ELL+
Sbjct: 234 ATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 293
Query: 149 AIERGVTQNVVTLIQLLQ------RLEMGHI-----------PRTITFNNVIQALCGVGK 191
+GV +V T L+ R+ G++ P +T+N +I GK
Sbjct: 294 MKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGK 353
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A LL M G P+ + + LI
Sbjct: 354 VLIASQLLNEMLSFGLSPNHVTFNALI 380
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K K I++ + +K G + V +N L+ L N R+ + Y
Sbjct: 280 KKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSN----------------RIAKGY 323
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+L +++ + P+ TY +++GF G+ A +LLNE + G++
Sbjct: 324 LLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLS------------- 370
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN +I G +AL + ++M G PS S+ +L+ L
Sbjct: 371 -----PNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 418
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+L G ++++ E+ + G P VYT AI+ K G L E ++R + +
Sbjct: 173 YLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPD 232
Query: 158 VVT---LIQ-------------LLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V T LI L+Q++E G+ P +T+N V+ C G+ A+ LL
Sbjct: 233 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 292
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G +++MLI L
Sbjct: 293 HMKSKGVDADVCTYNMLIHDL 313
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ LKE I I+ ++ +G FN L+ +L G+V EA
Sbjct: 525 RMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCK----------------AGKVAEAE 568
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E + + +DG+ P+ ++ +++G+ G +A + +E + G T LL+ L
Sbjct: 569 EFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGL 628
Query: 169 -EMGHIPR----------------TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ GH+ T+ +N ++ A+C G + KA+ L M + +P
Sbjct: 629 CKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDS 688
Query: 212 TSHDMLIKKLDQQ 224
++ LI L ++
Sbjct: 689 YTYTSLISGLCRK 701
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVT 160
G + +A + + + PD YTYT+++ G C+ G++ A+ EA RG V N V
Sbjct: 667 GNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVM 726
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ Q +GH P +T N +I +GKI K LL M
Sbjct: 727 YTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMG 786
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
P+ T++++L+ ++
Sbjct: 787 NQNGGPNLTTYNILLHGYSKR 807
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA E+ + + N GLK D+ +Y ++ G C G A EL E G N T
Sbjct: 1018 GNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTY 1077
Query: 162 IQLLQRL 168
L++ L
Sbjct: 1078 KALIRGL 1084
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 69 NWSVSDFNDLLMALVMLNEQDTAVKFFS----NHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
NW+ D ++ +L + ++DT S NH R +E+ +L + G+ P+
Sbjct: 881 NWAF-DLVKVMTSLGISLDKDTCDAMVSVLNRNH----RFQESRMVLHEMSKQGISPESR 935
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVV--TLIQLLQR-------------- 167
Y +++G C+VG A + E I + NV +++ L +
Sbjct: 936 KYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFM 995
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
L+M +P +F ++ C G + +AL L +M G S+++LI L
Sbjct: 996 LKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGL 1049
>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
Length = 1096
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 28 ESLDLKENPRSLQAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E L +P + +D I KE + +F ++ G S + LL L
Sbjct: 323 EMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNA 382
Query: 87 EQDTAVKFF----SNHLMVGRV---------------EEAYEMLMNVKNDGLKPDVYTYT 127
E D A F+ N + VGR+ +EA +L + DG+ PD+ TY+
Sbjct: 383 EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYS 442
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRLEM-------------- 170
A+++GFCKVGR A E++ G++ N + TLI R+
Sbjct: 443 ALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILE 502
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
GH TFN ++ +LC GK+ +A + M G +P+ S D LI
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------- 99
++ +++ ++IF + G N SV N +L ++V E + F L
Sbjct: 134 LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDV 193
Query: 100 -----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G E++ ++ ++ G P + TY ++ +CK GR A+ELL+
Sbjct: 194 ATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 253
Query: 149 AIERGVTQNVVTLIQLLQ------RLEMGHI-----------PRTITFNNVIQALCGVGK 191
+GV +V T L+ R+ G++ P +T+N +I GK
Sbjct: 254 MKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGK 313
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A LL M G P+ + + LI
Sbjct: 314 VLIASQLLNEMLSFGLSPNHVTFNALI 340
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K K I++ + +K G + V +N L+ L N R+ + Y
Sbjct: 240 KKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSN----------------RIAKGY 283
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+L +++ + P+ TY +++GF G+ A +LLNE + G++
Sbjct: 284 LLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLS------------- 330
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN +I G +AL + ++M G PS S+ +L+ L
Sbjct: 331 -----PNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 378
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+L G ++++ E+ + G P VYT AI+ K G L E ++R + +
Sbjct: 133 YLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPD 192
Query: 158 VVT---LIQ-------------LLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V T LI L+Q++E G+ P +T+N V+ C G+ A+ LL
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G +++MLI L
Sbjct: 253 HMKSKGVDADVCTYNMLIHDL 273
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ LKE I I+ ++ +G FN L+ +L G+V EA
Sbjct: 485 RMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCK----------------AGKVAEAE 528
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E + + +DG+ P+ ++ +++G+ G +A + +E + G T LL+ L
Sbjct: 529 EFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGL 588
Query: 169 -EMGHIPR----------------TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ GH+ T+ +N ++ A+C G + KA+ L M + +P
Sbjct: 589 CKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDS 648
Query: 212 TSHDMLIKKLDQQ 224
++ LI L ++
Sbjct: 649 YTYTSLISGLCRK 661
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVT 160
G + +A + + + PD YTYT+++ G C+ G++ A+ EA RG V N V
Sbjct: 627 GNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVM 686
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ Q +GH P +T N +I +GKI K LL M
Sbjct: 687 YTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMG 746
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
P+ T++++L+ ++
Sbjct: 747 NQNGGPNLTTYNILLHGYSKR 767
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA E+ + + N GLK D+ +Y ++ G C G A EL E G N T
Sbjct: 978 GNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTY 1037
Query: 162 IQLLQRL 168
L++ L
Sbjct: 1038 KALIRGL 1044
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 69 NWSVSDFNDLLMALVMLNEQDTAVKFFS----NHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
NW+ D ++ +L + ++DT S NH R +E+ +L + G+ P+
Sbjct: 841 NWAF-DLVKVMTSLGISLDKDTCDAMVSVLNRNH----RFQESRMVLHEMSKQGISPESR 895
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVV--TLIQLLQR-------------- 167
Y +++G C+VG A + E I + NV +++ L +
Sbjct: 896 KYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFM 955
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
L+M +P +F ++ C G + +AL L +M G S+++LI L
Sbjct: 956 LKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGL 1009
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L + ++F+ + KDG N + ++ L+ L NE GR+ EA +ML
Sbjct: 248 LDKAFEVFDRMVKDGCNPNSVTYSTLINGLC--NE--------------GRIGEAMDMLE 291
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------- 165
+ G++P VYTYT + C +GR ++A+ L+ ++G + +V T ++
Sbjct: 292 EMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAG 351
Query: 166 ----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+ L+ G +P T+T+N +I LC G+ AL + M HG + + +++
Sbjct: 352 KMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYN 411
Query: 216 MLIKKL 221
+IK L
Sbjct: 412 QIIKGL 417
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 18/209 (8%)
Query: 30 LDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
D+ + +++ AQ F +K S L I KK +V FN + + +
Sbjct: 175 FDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQ-FDLCPDAF 233
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T H ++++A+E+ + DG P+ TY+ +++G C GR EAM++L E
Sbjct: 234 TYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEM 293
Query: 150 IERGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKI 192
E+G+ V T I L++ + + G P T+ +I L GK+
Sbjct: 294 TEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKM 353
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A+ + M + G +P+ +++ LI +L
Sbjct: 354 ELAIGMYHKMLKEGLVPNTVTYNALINEL 382
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 36/202 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMA-------------LVMLNEQD------TAVKFFSNHL 99
+FN + KDG + +V +N L++ L M+ E + T + S
Sbjct: 429 VFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFC 488
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G+++ A + G+ P+ +TYTA++DG+CK G+ + A+ L E G + ++
Sbjct: 489 KGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIE 548
Query: 160 TLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ L E G P TIT+ ++I LC + A + M
Sbjct: 549 TYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEM 608
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+ +P+ ++ LI L Q+
Sbjct: 609 EKKNCLPNAHTYTSLIYGLCQE 630
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 27/187 (14%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLN 86
L + R +A++F K+ L+ + S+ K TN + F+++ + N
Sbjct: 557 LSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPN 616
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
T G+V+ A + N G +P + TY+ ++ G C+ GRSNEA +L+
Sbjct: 617 AH-TYTSLIYGLCQEGKVDAAERLTEN----GCEPTIDTYSTLVSGLCREGRSNEASQLV 671
Query: 147 NEAIERGVTQNVVTLIQLL----------QRLEM-------GHIPRTITFNNVIQALCGV 189
E+G++ ++ LL LE+ G P + +I ALCGV
Sbjct: 672 ENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGV 731
Query: 190 GKIHKAL 196
+ +AL
Sbjct: 732 SRAEEAL 738
>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Glycine max]
Length = 703
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 93/193 (48%), Gaps = 40/193 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------- 100
K+ + E + + ++++G V ++ L+ A + +T + F L
Sbjct: 196 CKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNV 255
Query: 101 ------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GR EA EML ++ G++PDV YT + DG CK GR+ +A+++L+
Sbjct: 256 VTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDL 315
Query: 149 AIERG-----VTQNVVT--------------LIQLLQRLEMGHIPRTITFNNVIQALCGV 189
+++G +T NVV +++++ ++ G P +T+N +++ LCG
Sbjct: 316 MVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMM--VKKGKKPDAVTYNTLLKGLCGA 373
Query: 190 GKIHKALLLLFLM 202
GKIH+A+ L L+
Sbjct: 374 GKIHEAMDLWKLL 386
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 42/229 (18%)
Query: 21 SRSPSAAESLDL----KENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDF 75
R+ A + LDL E P +L V+ + K + + + + K G +
Sbjct: 304 GRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTY 363
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA---YEMLMNVKNDGLKPDVYTYTAIMDG 132
N LL L G++ EA +++L++ K +KPDV+T ++ G
Sbjct: 364 NTLLKGLCG----------------AGKIHEAMDLWKLLLSEKFH-VKPDVFTCNNLIQG 406
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVT-------------LIQLLQ----RLEMGHIPR 175
CK GR ++A + + +E G+ N+VT LI+ L+ +E G P
Sbjct: 407 LCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPN 466
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
++T++ +I LC + + A L M + G P+ ++ L+ L ++
Sbjct: 467 SMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCRE 515
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 91/240 (37%), Gaps = 74/240 (30%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------------NHLMVG 102
+ + + K G +V + N +L + D A+ FS N L+ G
Sbjct: 99 VLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNG 158
Query: 103 -----RVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAM------------- 143
R+ EA + +K G +P++ TY+ ++D +CK G E +
Sbjct: 159 FCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKA 218
Query: 144 ----------------------ELLNEAIERGVTQNVVTLIQLLQRL----------EM- 170
EL +E + R V+ NVVT L+Q L EM
Sbjct: 219 DVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEML 278
Query: 171 ------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G P + + + LC G+ A+ +L LM + G+ P ++++++ L ++
Sbjct: 279 KDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKE 338
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 33/161 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F +K G +V D+N L+ +L +D+ +E+A + ++N
Sbjct: 489 LFCKMKDSGIRPTVIDYNALMTSLC---REDS-------------LEQARSLFQEMRNVN 532
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR----------- 167
DV ++ I+DG K G A ELL+E + + VT L+ R
Sbjct: 533 HNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAM 592
Query: 168 ------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ GH+P + F+++++ G+ K + LL M
Sbjct: 593 GLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQM 633
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A+ +L + G +VY ++ GFC+ G+ ++AM L ++ ++
Sbjct: 96 AFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQ----------------MK 139
Query: 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTSHDMLI 218
R +P +T+N ++ C ++ +A +L M + G P+ ++ +LI
Sbjct: 140 RNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLI 192
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 23/172 (13%)
Query: 75 FNDLLMALVMLNE---QDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128
+D L+A+ + E Q + V + + + +GR++EA E++ ++ G+KPDV TY+
Sbjct: 346 LDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYST 405
Query: 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMG 171
I+ G+CK+G ++ A EL + +++GV + +T L+ + L++G
Sbjct: 406 ILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLG 465
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P T+ +I C G + KAL L M + G +P ++ +LI L +
Sbjct: 466 LQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSK 517
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 36/196 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------------NHLM 100
+ + ++ G +V +N L+ A E D A + N L
Sbjct: 177 VGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLC 236
Query: 101 -VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GR+E+A +M + +GL PD +Y ++ G+CK G +EA+ + E ++GV +VV
Sbjct: 237 KAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVV 296
Query: 160 TLIQLLQRL-EMGHIPRTI----------------TFNNVIQALCGVGKIHKALLLLFLM 202
T L+ + G++ R + TF +I C G + ALL + M
Sbjct: 297 TFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEM 356
Query: 203 YEHGKIPSRTSHDMLI 218
E PS +++LI
Sbjct: 357 RECRIQPSVVCYNVLI 372
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF------------- 94
KA L E + +F + + G V F L+ A+ + AV
Sbjct: 271 CKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNE 330
Query: 95 FSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F+ ++ G +++A + ++ ++P V Y +++G+CK+GR +EA EL++E
Sbjct: 331 FTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHE 390
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
+G+ +VVT +L + L+ G +P IT++++I+ LC +
Sbjct: 391 MEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERR 450
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A L M + G P ++ LI
Sbjct: 451 LGDACELFEKMLQLGLQPDEFTYTTLI 477
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 37/185 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------------------ 100
+ S+ +DG +V +N L+ AL +++ A+ + +
Sbjct: 141 LLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAF 200
Query: 101 --VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
G V+ A ++ ++ G++P + T+ +++G CK GR +A ++ +E G+T +
Sbjct: 201 CRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDG 260
Query: 159 VT-----------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
V+ L + + G +P +TF ++I A+C G + +A+ L+
Sbjct: 261 VSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQ 320
Query: 202 MYEHG 206
M E G
Sbjct: 321 MRERG 325
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE-RGVTQNVVTLIQLL 165
A +L ++ DG+ P+VYTY ++ C G+ EA+ ++ + + G NVVT L+
Sbjct: 138 ARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLV 197
Query: 166 ------------QRL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+RL E G P +TFN V+ LC G++ A + M G
Sbjct: 198 AAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLT 257
Query: 209 PSRTSHDMLI 218
P S++ L+
Sbjct: 258 PDGVSYNTLV 267
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 36/192 (18%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNHLMVGR 103
+++ G S+ FN ++ L + A K F S + G
Sbjct: 216 MREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGC 275
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA + + G+ PDV T+T+++ C+ G A+ L+ + ERG+ N T
Sbjct: 276 LHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTA 335
Query: 164 LLQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ EM P + +N +I C +G++ +A L+ M G
Sbjct: 336 LIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKG 395
Query: 207 KIPSRTSHDMLI 218
P ++ ++
Sbjct: 396 MKPDVVTYSTIL 407
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE- 148
T H G V++A + + G+ PDV TY+ ++DG K R+ EA LL +
Sbjct: 472 TYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL 531
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188
E V N+ + + H RT F +V+ L G
Sbjct: 532 YYEDPVPDNI-------KYEALMHCCRTAEFKSVVALLKG 564
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRVEEA ++ V +G PD T+ ++++GFC++G N+A+++++ IE+G +V T
Sbjct: 242 GRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTY 301
Query: 162 ----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I++LQ++ + P T+T+N +I ALC +I A L ++
Sbjct: 302 NSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVS 361
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P + + LI+ L
Sbjct: 362 KGLLPDVCTFNTLIQGL 378
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V +A +++ + G PDVYTY +++ G CK+G +A+E+L + I R + N VT
Sbjct: 276 IGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVT 335
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L G +P TFN +IQ LC A+ + M
Sbjct: 336 YNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMK 395
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P ++ +LI L
Sbjct: 396 NKGCKPDEFTYSILIDSL 413
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 33/164 (20%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
V FN L+ L + QD A+ EM +KN G KPD +TY+ ++D
Sbjct: 368 VCTFNTLIQGLCLSKNQDIAM----------------EMFEEMKNKGCKPDEFTYSILID 411
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVV---TLI-------------QLLQRLEMGHIPR 175
C R EA+ LL E G +N V TLI ++ ++E+ + R
Sbjct: 412 SLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSR 471
Query: 176 -TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++T+N +I LC ++ +A L+ M G P + +++ L+
Sbjct: 472 SSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLL 515
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 33/173 (19%)
Query: 66 DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYT 125
+G VS FN L+ AL ++ A+ ML + N GLKPD T
Sbjct: 152 EGIVLDVSTFNVLIKALCKAHQLRPAIL----------------MLEEMANHGLKPDEIT 195
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL-----------------LQRL 168
+T +M GF + G N A+++ + + G V++ L L+
Sbjct: 196 FTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVS 255
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
E G P +TFN+++ C +G ++ AL ++ M E G P +++ LI +
Sbjct: 256 EEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGM 308
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 37/210 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV--------------MLNEQDTAVKF 94
K+ +++ +IF+ ++ G + S +N L+ L M+ E KF
Sbjct: 450 KSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKF 509
Query: 95 FSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ VG +E+A +++ + ++G +PD++TY ++ G C+ GR + A +LL
Sbjct: 510 TYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSV 569
Query: 150 IERGVTQN------VVTLIQLLQR-----------LEMGHIPRTITFNNVIQALC-GVGK 191
+G+ V+ + + +R +E P +T V + LC G G
Sbjct: 570 QMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGP 629
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +A+ M E G +P S L + L
Sbjct: 630 IQEAIDFTVEMLEKGILPEFPSFGFLAEGL 659
>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Vitis vinifera]
Length = 728
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR++EA E+L +K G DV Y ++ GFC G + EL +E + +G++ NVVT
Sbjct: 228 GRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTY 287
Query: 161 --LIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L RL E G P +T+ +I LC G+ A+ LL LM E
Sbjct: 288 SCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVE 347
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G+ PS ++++L+ L ++
Sbjct: 348 KGEEPSNVTYNVLLSGLCKE 367
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 39/228 (17%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P S+ +D + K + E +++ ++KK G + V + L+ D +
Sbjct: 212 PNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKEL 271
Query: 95 FSNHL-------------------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
F L +G+ +EA +L + G+ PDV TYT ++DG CK
Sbjct: 272 FDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK 331
Query: 136 VGRSNEAMELLNEAIERG-----VTQN-----------VVTLIQLLQRL-EMGHIPRTIT 178
GR+ AM+LLN +E+G VT N V+ ++L+ + E G +T
Sbjct: 332 DGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVT 391
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKI--PSRTSHDMLIKKLDQQ 224
+N +++ LC GK+ +AL L M+++ P+ + +MLI L ++
Sbjct: 392 YNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKE 439
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 100/234 (42%), Gaps = 39/234 (16%)
Query: 16 LVDSPSRSPSAAESLDL-------KENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
L+D + A ++DL E P ++ + + K + + I + + G
Sbjct: 325 LIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKG 384
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
V +N L+ L + D A+K F++ M + L+P+V+T+
Sbjct: 385 KKADVVTYNTLMKGLCDKGKVDEALKLFNS--------------MFDNENCLEPNVFTFN 430
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEM 170
++ G CK GR +A+++ + +++G N+VT LL Q L++
Sbjct: 431 MLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDL 490
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G +P + T++ +I C + ++ A L M HG P+ ++ L+ L ++
Sbjct: 491 GFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKE 544
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 33/193 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K L + + I + K G+ ++ +N LL L G+++EA
Sbjct: 437 CKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLL----------------GGCLKAGKIKEA 480
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
E+ V + G P+ +TY+ ++DGFCK+ N A L E G+ + L+
Sbjct: 481 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMAS 540
Query: 168 L--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L EMG+ P I+FN +I G L M E G P
Sbjct: 541 LCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPD 600
Query: 211 RTSHDMLIKKLDQ 223
+ LI +L +
Sbjct: 601 ALTFSTLINRLSK 613
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 78/198 (39%), Gaps = 35/198 (17%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
+ LDL P S +D K L +F ++ G N ++ D+N L+ +L
Sbjct: 486 QVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCK-- 543
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
G +E+A + + N +PD+ ++ ++DG K G EL
Sbjct: 544 --------------EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQ 589
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ +EMG P +TF+ +I L +G++ +A L M G
Sbjct: 590 ------------------MKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASG 631
Query: 207 KIPSRTSHDMLIKKLDQQ 224
P +D L+K L +
Sbjct: 632 FTPDALVYDSLLKGLSSK 649
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIM------------------------------- 130
G V EA ++ + + PD+ +Y ++
Sbjct: 158 GGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTC 217
Query: 131 ----DGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLL--------------QRLE 169
DG CK GR +EAMELL ++G +VV TLI + L
Sbjct: 218 TTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLG 277
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +T++ ++ LC +G+ +A +L M EHG P ++ LI L
Sbjct: 278 KGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGL 329
>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 543
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 33/183 (18%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA----VKFFSNHL----------- 99
E + + NS+ G + +L +L + A K FSN
Sbjct: 248 EALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVI 307
Query: 100 ----MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G V A ++L + G PD+ TY++IMDG CK R +EA++LL E + V+
Sbjct: 308 TSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVS 367
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+N IP +TFN +I +LC G +A+ ++ M EHG IP T+++
Sbjct: 368 KNC--------------IPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYN 413
Query: 216 MLI 218
++
Sbjct: 414 CIV 416
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A +L +++ G +PD+ TY +++ C G EA+++LN G + VT +
Sbjct: 212 KQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPV 271
Query: 165 LQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L+ L P +TFN VI +LC G + +A +L M EHG
Sbjct: 272 LKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGC 331
Query: 208 IPSRTSHDMLIKKLDQQ 224
P ++ ++ L ++
Sbjct: 332 TPDIITYSSIMDGLCKE 348
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF-CKVGRSNEAMELLNEAIERGVTQNVVT 160
G + A +++ + G PD+ TY I+DGF CK ++ EA++LLN + G+ + T
Sbjct: 388 GLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTT 447
Query: 161 L----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
I + +R++ MG P + +N ++ LC + A+ M
Sbjct: 448 YKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMV 507
Query: 204 EHGKIPSRTSHDMLIKKL 221
+G +P +++ +L++ +
Sbjct: 508 SNGCMPDESTYIILVEGI 525
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 20/176 (11%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122
IKK + V+D ++ AL T + + G ++ A M+ +V PD
Sbjct: 103 IKKLCADGRVADAERVVEALGPSATIITYNTMVNGYCRAGNIDAARRMIDSVP---FAPD 159
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------------- 168
+TY ++ C G +A+ + ++ + RG + +VVT LL
Sbjct: 160 TFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLD 219
Query: 169 EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
EM G P +T+N +I A+C G + +AL +L + +G P ++ ++K L
Sbjct: 220 EMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSL 275
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +A + ++ + G P V TY+ ++D CK +A+ LL+E +G ++VT
Sbjct: 174 GCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTY 233
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + G P +T+ V+++LC + +A LL M+
Sbjct: 234 NVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFS 293
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+ P + + +I L Q+
Sbjct: 294 NDCAPDEVTFNAVITSLCQK 313
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+ +E +D+ N + +G + + L L +E + A+ F
Sbjct: 421 CKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRR---------- 470
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
V+ GL PD Y AI+ G CK R++ A++ + G + T I L++
Sbjct: 471 ------VQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVE 523
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L+E +I NS+ G + + +N L+ AL +D G +EEA
Sbjct: 424 KQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALC----KD------------GNIEEAL 467
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ + G KPD+YT+ ++++G CK + EA+ L ++ GV N VT L+
Sbjct: 468 QLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAF 527
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
M G IT+N +I+ALC G + K L L M G P+
Sbjct: 528 LMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTI 587
Query: 212 TSHDMLIKKL 221
S ++LI L
Sbjct: 588 ISCNILISGL 597
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 36/206 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-------- 100
K ++E + +++ + +G + +N L+ A +M + A K L
Sbjct: 494 KNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNI 553
Query: 101 -----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G VE+ + + G+ P + + ++ G C+ G+ N+A++ L +
Sbjct: 554 TYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDM 613
Query: 150 IERGVTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKI 192
I RG+T ++VT L+ L +MGH+ P IT+N +I C G
Sbjct: 614 IHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMF 673
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A LLL+ + G IP+ + +LI
Sbjct: 674 NDACLLLYKGVDSGFIPNEVTWSILI 699
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query: 96 SNHLMVGRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
S ++ GR EEA ++L N + G +PD YT+ ++DG K G A+ELLNE + +
Sbjct: 349 SGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRF 408
Query: 155 TQNVVTLIQLLQ------RLE-----------MGHIPRTITFNNVIQALCGVGKIHKALL 197
NV+T L+ RLE G T+ +N +I ALC G I +AL
Sbjct: 409 EPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQ 468
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
L M G P + + LI L
Sbjct: 469 LFGEMSGKGCKPDIYTFNSLINGL 492
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A E+L + +P+V TYT +++GFCK GR EA E++N +G++ N V
Sbjct: 391 GYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGY 450
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P TFN++I LC K+ +AL L M+
Sbjct: 451 NCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFL 510
Query: 205 HGKIPSRTSHDMLI 218
G I + +++ L+
Sbjct: 511 EGVIANTVTYNTLV 524
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 33/197 (16%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG--------------- 102
++F + G + +V F ++ AL M++E D+A + G
Sbjct: 191 NVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHAL 250
Query: 103 ----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
RV EA ++L ++ +PDV T+ ++ G C+ GR +EA +LL+ + RG + +
Sbjct: 251 CENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDA 310
Query: 159 VTLIQLLQRL-EMGHI------------PRTITFNNVIQALCGVGKIHKALLLLF-LMYE 204
+T L+ L MG + P T+ +N +I G+ +A LL+ M
Sbjct: 311 LTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVI 370
Query: 205 HGKIPSRTSHDMLIKKL 221
G P + +++I L
Sbjct: 371 AGYEPDAYTFNIMIDGL 387
>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR++EA E+L +K G DV Y ++ GFC G + EL +E + +G++ NVVT
Sbjct: 82 GRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTY 141
Query: 161 --LIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L RL E G P +T+ +I LC G+ A+ LL LM E
Sbjct: 142 SCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVE 201
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G+ PS ++++L+ L ++
Sbjct: 202 KGEEPSNVTYNVLLSGLCKE 221
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 39/228 (17%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P S+ +D + K + E +++ ++KK G + V + L+ D +
Sbjct: 66 PNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKEL 125
Query: 95 FSNHL-------------------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
F L +G+ +EA +L + G+ PDV TYT ++DG CK
Sbjct: 126 FDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK 185
Query: 136 VGRSNEAMELLNEAIERG-----VTQN-----------VVTLIQLLQRL-EMGHIPRTIT 178
GR+ AM+LLN +E+G VT N V+ ++L+ + E G +T
Sbjct: 186 DGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVT 245
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKI--PSRTSHDMLIKKLDQQ 224
+N +++ LC GK+ +AL L M+++ P+ + +MLI L ++
Sbjct: 246 YNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKE 293
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 101/236 (42%), Gaps = 43/236 (18%)
Query: 16 LVDSPSRSPSAAESLDL-------KENPRSLQAQRFVDKIKASPLKERIDIFNSIK---K 65
L+D + A ++DL E P ++ + + L ID F ++ +
Sbjct: 179 LIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGL--VIDAFKILRMMIE 236
Query: 66 DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYT 125
G V +N L+ L + D A+K F++ M + L+P+V+T
Sbjct: 237 KGKKADVVTYNTLMKGLCDKGKVDEALKLFNS--------------MFDNENCLEPNVFT 282
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRL 168
+ ++ G CK GR +A+++ + +++G N+VT LL Q L
Sbjct: 283 FNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVL 342
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
++G +P + T++ +I C + ++ A L M HG P+ ++ L+ L ++
Sbjct: 343 DLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKE 398
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 33/193 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K L + + I + K G+ ++ +N LL L G+++EA
Sbjct: 291 CKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLL----------------GGCLKAGKIKEA 334
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
E+ V + G P+ +TY+ ++DGFCK+ N A L E G+ + L+
Sbjct: 335 MELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMAS 394
Query: 168 L--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L EMG+ P I+FN +I G L M E G P
Sbjct: 395 LCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPD 454
Query: 211 RTSHDMLIKKLDQ 223
+ LI +L +
Sbjct: 455 ALTFSTLINRLSK 467
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 35/196 (17%)
Query: 30 LDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
LDL P S +D K L +F ++ G N ++ D+N L+ +L
Sbjct: 342 LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCK---- 397
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G +E+A + + N +PD+ ++ ++DG K G EL
Sbjct: 398 ------------EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQ-- 443
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
++ +EMG P +TF+ +I L +G++ +A L M G
Sbjct: 444 ----------------MKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFT 487
Query: 209 PSRTSHDMLIKKLDQQ 224
P +D L+K L +
Sbjct: 488 PDALVYDSLLKGLSSK 503
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIM------------------------------- 130
G V EA ++ + + PD+ +Y ++
Sbjct: 12 GGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTC 71
Query: 131 ----DGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLL--------------QRLE 169
DG CK GR +EAMELL ++G +VV TLI + L
Sbjct: 72 TTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLG 131
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +T++ ++ LC +G+ +A +L M EHG P ++ LI L
Sbjct: 132 KGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGL 183
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + MVGR++EA E+L ++ GLKPDV TY+ I+ +CK ++ A EL + +E+G
Sbjct: 366 LINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG 425
Query: 154 VTQNVVT---LIQLL---QRLEMGHI-----------PRTITFNNVIQALCGVGKIHKAL 196
V + +T LI++L +RL H+ P T+ ++I C G + +AL
Sbjct: 426 VLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERAL 485
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L M + G +P ++ +LI L +
Sbjct: 486 SLHDKMVKAGVLPDVVTYSVLINGLSKS 513
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 36/201 (17%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------M 100
KE + I ++ G +V +N L+ A E D A + L M
Sbjct: 167 KEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSM 226
Query: 101 V------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
V G++E+A ++ + +GL PD +Y ++ G+CK G S+EA+ + E ++G+
Sbjct: 227 VNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 286
Query: 155 TQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
+VVT L+ Q E G +TF +I C G + ALL
Sbjct: 287 MPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALL 346
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
+ M + PS ++ LI
Sbjct: 347 AVRGMRQCRIKPSVVCYNALI 367
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 18/173 (10%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122
K W+V+ + + +NE T G +++A + ++ +KP
Sbjct: 301 CKAGNLEWAVTLVRQMRERGLQMNEV-TFTALIDGFCKKGFLDDALLAVRGMRQCRIKPS 359
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL----------------- 165
V Y A+++G+C VGR +EA ELL+E +G+ +VVT ++
Sbjct: 360 VVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQ 419
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q LE G +P IT++++I+ LC ++ A +L M + G P ++ LI
Sbjct: 420 QMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLI 472
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR-------- 167
+DG+ P+VYTY ++ C G EA+ +L + G NVVT L+
Sbjct: 143 SDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVD 202
Query: 168 ---------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L+ G P +TFN+++ +C GK+ A + M G P S++ L+
Sbjct: 203 GAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLV 262
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
F+S+ DG +V +N L+ AL G +EA +L +++ G
Sbjct: 137 FFDSMLSDGVAPNVYTYNILIRALCGR----------------GHRKEALSILRDMRGAG 180
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
P+V TY ++ F + G + A L+ ++ G+ N+VT ++ +
Sbjct: 181 CGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDAR 240
Query: 169 ----EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
EM G P +++N ++ C G H+AL + M + G +P + LI
Sbjct: 241 KVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLI 297
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
++ T H G VE A + + G+ PDV TY+ +++G K R+ EA +LL
Sbjct: 464 DEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLL 523
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV FN L+ + ++ +G +++ + + + G
Sbjct: 158 VFDAITKCGLRPSVVSFNTLI----------------NGYIRLGDLDKGFRLKTAMHASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
+ PDVYT T +++G CK + +EA EL NE +++G+ N VT L+
Sbjct: 202 VHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAL 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L G+ P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 EIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLI 318
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A ++++ + GLKPD TYT ++DG CK G A EL IE + + V
Sbjct: 290 GDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + A LL M
Sbjct: 350 TALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQR 409
Query: 205 HGKIPS 210
G +P
Sbjct: 410 DGHVPC 415
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP+ TYT I++GFCK G A +LL E G VVT
Sbjct: 360 GRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRVEEA +L +K GL+ DV Y+ ++ GFC G + L +E +E+G++ NVV
Sbjct: 59 GRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVY 118
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ E G P T+ +I LC G+ KAL L LM E
Sbjct: 119 SCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTE 178
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G+ PS ++++LI L ++
Sbjct: 179 KGEEPSTVTYNVLINGLCKE 198
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G EA +L + G++PDVYTYT ++ G CK GR+ +A++L + E+G
Sbjct: 129 GLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKG-------- 180
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+T+N +I LC G I A + M E GK S++ LI L
Sbjct: 181 ----------EEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGL 230
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 103/234 (44%), Gaps = 39/234 (16%)
Query: 16 LVDSPSRSPSAAESLDL-------KENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
++ + A ++LDL E P ++ ++ + K + + IF ++ + G
Sbjct: 156 MIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKG 215
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
V +N L+M L + D A+K FS+ L G E PDV T+
Sbjct: 216 KRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVE--------------PDVITFN 261
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRL-EM 170
++ G CK GR ++A+E+ + IERG N+ T ++L +R+ ++
Sbjct: 262 TVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKL 321
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G +P + T++ +I C + ++ A L M G P+ ++ L+ L ++
Sbjct: 322 GLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKE 375
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 19/116 (16%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------SNHLMV---- 101
+F+ +K G + ++ D+N L+ +L + + A + F S ++M+
Sbjct: 349 LFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTL 408
Query: 102 --GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G + A E+L +++ GL PD YTY++ ++ K+G+ EA + I G+T
Sbjct: 409 KAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGIT 464
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 52/153 (33%), Gaps = 52/153 (33%)
Query: 121 PDVYTYTAIM-----------------------------------DGFCKVGRSNEAMEL 145
PD+ +Y I+ DG CK GR EAM L
Sbjct: 8 PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67
Query: 146 LNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCG 188
L E +G+ +VV L+ + LE G P + ++ +I C
Sbjct: 68 LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +A +L M E G P ++ +I L
Sbjct: 128 KGLWREATAVLHTMTERGIQPDVYTYTCMIGGL 160
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 37/214 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
K L++ +F + +G + ++N L+ D A + + + VG
Sbjct: 19 CKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSI 78
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL-N 147
+++EA E+ + G +PDV TY+ I+ G CK G+ EA+E+L +
Sbjct: 79 YTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFH 138
Query: 148 EAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVG 190
+ IERG + N V L+ L EM G++P IT+N ++ LC +G
Sbjct: 139 KMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMG 198
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
K+ +A M G P +++ L+ L ++
Sbjct: 199 KVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKE 232
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 36/212 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K E + +F + G +N +L+ L + D A + F
Sbjct: 231 KEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGA 290
Query: 96 ------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
S H +V++A+++L + G PDV TY ++DG CK ++A EL +
Sbjct: 291 TYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTM 350
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
++ G ++V+ +L L E +P +TFN ++ LC GK+
Sbjct: 351 VDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKL 410
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+A LL M G P +++ L+ L +Q
Sbjct: 411 DEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQ 442
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 89/209 (42%), Gaps = 39/209 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR---- 103
K + +KE +++F ++ + G V ++ ++ L + A++ H M+ R
Sbjct: 89 CKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLF-HKMIERGCSA 147
Query: 104 -----------------VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+E AY++L + + G PD TY I+ G C++G+ +EA +
Sbjct: 148 NTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFF 207
Query: 147 NEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGV 189
+ RG + +VV LL L G++P T+T+N+++ L
Sbjct: 208 DSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARK 267
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +A + M G P+ ++ +++
Sbjct: 268 SNMDEAEEMFKKMVASGCAPNGATYSIVL 296
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--------------- 165
P+ YT+ ++ FCK G+ + +L + ++ G++ + + L+
Sbjct: 6 PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65
Query: 166 --QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + +G P T+N+++ A C K+ +A+ L M E G P ++ +I L
Sbjct: 66 YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123
>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 620
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++E + ++ ++ GL+P+V TYT I+D FCK G A +L + G T NVVT
Sbjct: 216 RMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFT 275
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L++ L G P T+++N +I+ LC VG + A +L M +H
Sbjct: 276 ALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQH 335
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P+ ++ LI +
Sbjct: 336 GCFPNVRTYSTLIDGFSK 353
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG ++ A +L +++ G P+V TY+ ++DGF K G A+ + N+ G NVV
Sbjct: 319 VGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVV 378
Query: 161 LIQLL----QRLEMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ ++L P T+TFN +I++LC ++ +AL + M
Sbjct: 379 YTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMR 438
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
HG +P+ +++ LI L ++
Sbjct: 439 RHGCVPNGRTYNELIHGLFRE 459
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 47/166 (28%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL---------------- 146
RV A +ML + G PD TY I+ CK+ R +EA E+L
Sbjct: 151 RVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLA 210
Query: 147 --------------NEAIERGVTQNVVTL----------------IQLLQRLEM-GHIPR 175
++ + RG+ NV+T +L R+ + G P
Sbjct: 211 LCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPN 270
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+TF +++ L G++H AL + M G PS S+++LI+ L
Sbjct: 271 VVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGL 316
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 33/188 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
LK I NS+++ G +V ++ L + FS G + A +
Sbjct: 322 LKGASSILNSMEQHGCFPNVRTYSTL-------------IDGFSK---AGDLGGAISIWN 365
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---- 168
++ G KP+V YT ++D FCK N+A L+++ + N VT L++ L
Sbjct: 366 DMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCR 425
Query: 169 ----------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
EM G +P T+N +I L G AL ++ M HG S +++
Sbjct: 426 RVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYN 485
Query: 216 MLIKKLDQ 223
++ L Q
Sbjct: 486 TVVSGLCQ 493
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +A M+ +++ G++ + TY ++ G C+ S EAM + + I +G+
Sbjct: 460 GNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQ------ 513
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
P TF+ +I A C G++ A +L M
Sbjct: 514 ------------PNAFTFSAIIHAYCKEGEVRMAAWMLGAM 542
>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 418
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+ I K G SV FN L+ + ++ +G ++E + + + G
Sbjct: 158 VFDGITKWGLRPSVVSFNTLM----------------NGYIKLGDLDEGFRLKSAMHASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + +EA +L +E ++RG+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L G P IT+N +I LC G + +A L M G P + ++ LI
Sbjct: 262 EIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLI 318
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V ++ +M+G+ K+G +E L +
Sbjct: 137 YFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSA 196
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
GV +V T L+ + L+ G +P +TF +I C GK
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGK 256
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M G P +++ LI L ++
Sbjct: 257 LDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKK 289
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 18/109 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A+E + + ++ D +YTA++ G CK GRS +A ++L E + G+
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLK------ 378
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
P T T+ V+ C G + LL M G +P
Sbjct: 379 ------------PDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVPC 415
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKPD TYT +M FCK G +LL E G V+T
Sbjct: 360 GRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVPCVIT 418
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 25/152 (16%)
Query: 90 TAVKFFSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
TAV + N L+ G R EAY++L + G PD++TYT ++ GFCK +S++A+
Sbjct: 114 TAVTY--NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 171
Query: 145 LLNEAIERGVTQNVVTL----------------IQLLQRL--EMGHIPRTITFNNVIQAL 186
+ + + RG +VVT I L R+ +P T+T+N++I
Sbjct: 172 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 231
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
C +GK+ +A+ LL M E G P ++ L+
Sbjct: 232 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLM 263
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 36/192 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE 106
K LKE ID+F + K G+ + +N L+ S +G+++E
Sbjct: 196 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI----------------SGFCRMGKMDE 239
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A +L + G PDV TYT +M+GFCK+ R ++A +LLN+ +G+T +VVT L+
Sbjct: 240 AMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMD 299
Query: 167 RL-------EMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
L + HI P T+N ++ C ++ +A F++ E P
Sbjct: 300 GLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEA--RKFMLEEMDCPP 357
Query: 210 SRTSHDMLIKKL 221
+ S +++I+ L
Sbjct: 358 NVVSFNIMIRGL 369
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V R+E+A L + + G PDVYTYTA++ C R +EA + L E R +T NVVT
Sbjct: 24 VKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVT 83
Query: 161 L----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ LL ++ +P +T+N++I LC + +A LL M
Sbjct: 84 YTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVY 143
Query: 205 HGKIPSRTSHDMLI 218
G IP ++ LI
Sbjct: 144 SGCIPDIFTYTTLI 157
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 71/222 (31%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K + L + D+ N + + G V F L+ L N R+ +A
Sbjct: 267 CKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCREN----------------RLSDA 310
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFC--------------------------------- 134
+L ++ P VYTY I+DG+C
Sbjct: 311 VHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLC 370
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------------------EMGHIPRT 176
KV RS+EAMEL+ EA R +VV ++ L E G +P +
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IT++ +I LC G + +A + E G +P+ ++++LI
Sbjct: 431 ITYSTLITGLCNAGMLDRARGYI----EKGCVPNIGTYNLLI 468
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----- 168
V + D TYT+++ G CKV R +A+ L + + +G +V T ++ L
Sbjct: 2 VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61
Query: 169 ---------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
EM + P +T+ +I LC G++ +A+ LL M + +P+ +++
Sbjct: 62 LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKC-VPTAVTYNS 120
Query: 217 LIKKL 221
LI L
Sbjct: 121 LISGL 125
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 25/152 (16%)
Query: 90 TAVKFFSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
TAV + N L+ G R EAY++L + G PD++TYT ++ GFCK +S++A+
Sbjct: 114 TAVTY--NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 171
Query: 145 LLNEAIERGVTQNVVTL----------------IQLLQRL--EMGHIPRTITFNNVIQAL 186
+ + + RG +VVT I L R+ +P T+T+N++I
Sbjct: 172 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 231
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
C +GK+ +A+ LL M E G P ++ L+
Sbjct: 232 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLM 263
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 36/192 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE 106
K LKE ID+F + K G+ + +N L+ S +G+++E
Sbjct: 196 CKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLI----------------SGFCRMGKMDE 239
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A +L + G PDV TYT +M+GFCK+ R ++A +LLN+ +G+T +VVT L+
Sbjct: 240 AMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMD 299
Query: 167 RL-------EMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
L + HI P T+N ++ C ++ +A F++ E P
Sbjct: 300 GLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEA--RKFMLEEMDCPP 357
Query: 210 SRTSHDMLIKKL 221
+ S +++I+ L
Sbjct: 358 NVVSFNIMIRGL 369
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V R+E+A L + + G PDVYTYTA++ C R +EA + L E R +T NVVT
Sbjct: 24 VKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVT 83
Query: 161 L----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ LL ++ +P +T+N++I LC + +A LL M
Sbjct: 84 YTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVY 143
Query: 205 HGKIPSRTSHDMLI 218
G IP ++ LI
Sbjct: 144 SGCIPDIFTYTTLI 157
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 71/222 (31%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K + L + D+ N + + G V F L+ L N R+ +A
Sbjct: 267 CKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCREN----------------RLSDA 310
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFC--------------------------------- 134
+L ++ P VYTY I+DG+C
Sbjct: 311 VHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLC 370
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------------------EMGHIPRT 176
KV RS+EAMEL+ EA R +VV ++ L E G +P +
Sbjct: 371 KVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNS 430
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IT++ ++ LC G + +A + E G +P+ ++++LI
Sbjct: 431 ITYSTLVTGLCNAGMLDRARGYI----EKGCVPNIGTYNLLI 468
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----- 168
V + D TYT+++ G CKV R +A+ L + + +G +V T ++ L
Sbjct: 2 VATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61
Query: 169 ---------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
EM + P +T+ +I LC G++ +A+ LL M + +P+ +++
Sbjct: 62 LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKC-VPTAVTYNS 120
Query: 217 LIKKL 221
LI L
Sbjct: 121 LISGL 125
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
K +K+ ++IF ++ + G +V + L+ AL + K F
Sbjct: 667 CKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDL 726
Query: 96 -------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++H G ++ A+E++ ++ + PD TY +M G C +GR +EA +L++E
Sbjct: 727 VLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDE 786
Query: 149 AIERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGK 191
ERG+ ++VT L+ M G P +T+N +IQ LC G+
Sbjct: 787 MTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQ 846
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A ++ M E+G P +++ LI+ L +
Sbjct: 847 GDDAENMVKEMVENGITPDDSTYISLIEGLTTE 879
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 52/172 (30%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
M GR EAYE++ + GL PDV+TY +++G CK G +A+E+ RGV V
Sbjct: 632 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 691
Query: 159 VTLIQLLQRLE----------------------------------------------MGH 172
VT L+ L MG
Sbjct: 692 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 751
Query: 173 I------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ P +T+N +++ LC +G++ +A L+ M E G P +++ LI
Sbjct: 752 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 803
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 102 GRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV+ A +++ ++ G+ P+ YTY ++ G+CKVGR +EA+++ +E + +G +
Sbjct: 528 GRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK---- 583
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P + +N +I C GK+ ALL M E G + ++++L+
Sbjct: 584 -------------PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHA 630
Query: 221 L 221
L
Sbjct: 631 L 631
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 18/155 (11%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELL 146
Q T S VGRV+EA ++ + G +KP+ Y A++ G+C G+ + A+
Sbjct: 550 QYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYR 609
Query: 147 NEAIERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGV 189
+ +ERGV V T L+ L M G P T+N +I C
Sbjct: 610 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE 669
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G + KAL + M G + ++ LI L ++
Sbjct: 670 GNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 704
>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 647
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++E + ++ ++ GL+P+V TYT I+D FCK G A +L + G T NVVT
Sbjct: 243 RMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFT 302
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L++ L G P T+++N +I+ LC VG + A +L M +H
Sbjct: 303 ALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQH 362
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P+ ++ LI +
Sbjct: 363 GCFPNVRTYSTLIDGFSK 380
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG ++ A +L +++ G P+V TY+ ++DGF K G A+ + N+ G NVV
Sbjct: 346 VGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVV 405
Query: 161 LIQLL----QRLEMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ ++L P T+TFN +I++LC ++ +AL + M
Sbjct: 406 YTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMR 465
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
HG +P+ +++ LI L ++
Sbjct: 466 RHGCVPNGRTYNELIHGLFRE 486
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 33/188 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
LK I NS+++ G +V ++ L + FS G + A +
Sbjct: 349 LKGASSILNSMEQHGCFPNVRTYSTL-------------IDGFSK---AGDLGGAISIWN 392
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---- 168
++ G KP+V YT ++D FCK N+A L+++ + N VT L++ L
Sbjct: 393 DMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCR 452
Query: 169 ----------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
EM G +P T+N +I L G AL ++ M HG S +++
Sbjct: 453 RVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYN 512
Query: 216 MLIKKLDQ 223
++ L Q
Sbjct: 513 TVVSGLCQ 520
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 50/169 (29%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----- 154
MVG V Y+ N++ DG+ P+V+TY ++ C+ R A ++L+E +G
Sbjct: 143 MVGAVVLVYD---NMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDV 199
Query: 155 -TQNVVTLIQLLQRLE-----------------------------------------MGH 172
+V+++ L RL+ G
Sbjct: 200 TYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGL 259
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P IT+ ++ A C G++ A +L M G P+ + L++ L
Sbjct: 260 QPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGL 308
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +A M+ +++ G++ + TY ++ G C+ S EAM + + I +G+
Sbjct: 487 GNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQ------ 540
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
P TF+ +I A C G++ A +L M
Sbjct: 541 ------------PNAFTFSAIIHAYCKEGEVRMAAWMLGAM 569
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN------HLMVG 102
KA +E +IF ++ + G +N ++ L + D A + H V
Sbjct: 572 KAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVA 631
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
R++EAY + K+ G++ +V Y++++DGF KVGR +EA +L E
Sbjct: 632 TYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEM 691
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+++G+T NV T L+ L EM P T T++ +I LC V K
Sbjct: 692 MKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKY 751
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+KA + M + G IP+ ++ +I L
Sbjct: 752 NKAFVFWQEMQKQGLIPNVVTYTTMISGL 780
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR++EAY +L + GL P+VYT+ ++MD K +EA+ E + N T
Sbjct: 678 VGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYT 737
Query: 161 ---LIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI L R++ G IP +T+ +I L VG I A L
Sbjct: 738 YSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFK 797
Query: 204 EHGKIPSRTSHDMLIKKL 221
+G IP S + LI+ +
Sbjct: 798 TNGGIPDSASFNALIEGM 815
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 18/137 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-AIER-------- 152
G V+ A++ +K GL+PD +YT+++ CK GR EA EL + ER
Sbjct: 260 GSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAY 319
Query: 153 -------GVTQNVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
G + +LL+RL E G IP ++FN+++ L K+ +AL L +M +
Sbjct: 320 NTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKK 379
Query: 205 HGKIPSRTSHDMLIKKL 221
K P+ ++++++I L
Sbjct: 380 DAK-PNISTYNIIIDML 395
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 37/211 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK-------------FF 95
K + E + +F+ +KKD ++S +N ++ L M + A K
Sbjct: 363 KKRKVDEALTLFDVMKKDAKP-NISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLL 421
Query: 96 SNHLMVGRV------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
S ++MV R+ EEA+ + + G P+ TY +++DG K G+ ++A L +
Sbjct: 422 SVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKM 481
Query: 150 IERGVTQNVVTLIQLLQ------RLEMGHI-----------PRTITFNNVIQALCGVGKI 192
++ G N + L++ R E GH P N + + G++
Sbjct: 482 LDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEV 541
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
K + M G +P S+ +LI L +
Sbjct: 542 EKGRAIFEDMKSFGFLPDVRSYSILIHGLTK 572
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 20/201 (9%)
Query: 41 AQRFVDKIKASPLKERIDIFN----SIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
A VD++K S L+ I ++N K G+ F L A + + +
Sbjct: 230 ALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVW 289
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
GR+ EA E+ ++ + P Y Y ++ G+ R ++A +LL ERG
Sbjct: 290 VLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIP 349
Query: 157 NVVTL----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+VV+ + L ++ P T+N +I LC G++++A +
Sbjct: 350 SVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRD 409
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G P+ S ++++ +L
Sbjct: 410 EMELAGLFPNLLSVNIMVDRL 430
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
+K + E + F S+K+ + + ++ L+ L + + + A F+
Sbjct: 711 VKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNV 770
Query: 96 -------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
S VG + +AY + K +G PD ++ A+++G R EA ++ E
Sbjct: 771 VTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEE 830
Query: 149 AIERGVTQNVVTLIQLLQRL 168
RG NV T I LL L
Sbjct: 831 TRLRGCRLNVKTCISLLDAL 850
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 46/185 (24%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM 100
A+RF D K L ER+ ++ G SV FN +L L + D A+ F
Sbjct: 329 AERFDDAYK---LLERL------RERGCIPSVVSFNSILTCLGKKRKVDEALTLF----- 374
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+V KP++ TY I+D C GR NEA ++ +E
Sbjct: 375 ------------DVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDE------------ 410
Query: 161 LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+E+ G P ++ N ++ LC ++ +A + E G P+ ++ LI
Sbjct: 411 -------MELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLID 463
Query: 220 KLDQQ 224
L ++
Sbjct: 464 GLGKK 468
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 43/155 (27%)
Query: 56 RID----IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------- 98
RID I + K G +V +N L+ ALV E D A+ F +
Sbjct: 680 RIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYS 739
Query: 99 ------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
V + +A+ ++ GL P+V TYT ++ G KVG
Sbjct: 740 ILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVG--------------- 784
Query: 153 GVTQNVVTLIQLLQRLEM-GHIPRTITFNNVIQAL 186
N+ L +R + G IP + +FN +I+ +
Sbjct: 785 ----NITDAYSLFERFKTNGGIPDSASFNALIEGM 815
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE+ + ++K+ G PDV +Y+ ++ G K G++ E + ++G +
Sbjct: 539 GEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDAR-- 596
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+N V+ LC GK+ KA +L
Sbjct: 597 ----------------AYNAVVDGLCKSGKVDKAYEVL 618
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 32/194 (16%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN------HLMVG--------- 102
D+F+ + G V + L+ L D AV+ F H+
Sbjct: 209 DLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAE 268
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R EE ML +K G +P Y A++D C+ ++ EA E+L E E+G+ VVT
Sbjct: 269 RGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCT 328
Query: 163 QL-------------LQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ L+ LE+ G P T+N ++Q C GK+HKA+ LL M
Sbjct: 329 AVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRAC 388
Query: 206 GKIPSRTSHDMLIK 219
G P ++++LI+
Sbjct: 389 GVNPDAVTYNLLIR 402
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A+ +L ++ DGL D YTY A+++ CK GR+++A L + RG+ N VT
Sbjct: 408 GHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTF 467
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L G P T T+++ I+ LC + + L + M +
Sbjct: 468 NSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQ 527
Query: 205 HGKIPSRTSHDMLIKKL 221
PS ++ ++I KL
Sbjct: 528 KDVKPSTVNYTIVIHKL 544
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 18/132 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + GR+ +A +L +K G KP+V+TY A++ GFC G+ ++AM LLN+
Sbjct: 326 TCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKM 385
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
GV P +T+N +I+ C G I A LL LM G I
Sbjct: 386 RACGVN------------------PDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIA 427
Query: 210 SRTSHDMLIKKL 221
+ +++ LI L
Sbjct: 428 DQYTYNALINAL 439
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 33/169 (19%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
+ +F+S++ G + FN L+ L + D A KF L +
Sbjct: 447 QACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKF----------------LEKM 490
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------ 168
+ G PD YTY++ ++ CK+ S E + + E +++ V + V ++ +L
Sbjct: 491 VSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNY 550
Query: 169 --------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
EM G P +T+ ++A C G++++A +L M ++G
Sbjct: 551 GLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNG 599
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI--- 173
G +PD YT+ +++ G+C+ + + A +L ++ RG Q+VV+ L++ L E G I
Sbjct: 183 GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEA 242
Query: 174 ---------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P + +++ LC + + LL+L M E G PS ++ ++
Sbjct: 243 VELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVV 296
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE--- 148
N L+VG +V+ A ++ + G DV +Y +++G C+ GR +EA+EL E
Sbjct: 192 NSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQ 251
Query: 149 -------AIERGVT---QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
A+ +G+ + L+ L + E+G P T + V+ C K +A +
Sbjct: 252 PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEM 311
Query: 199 LFLMYEHGKIPS 210
L M+E G P
Sbjct: 312 LQEMFEKGLAPC 323
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
+ G PDV TYT M +C GR NEA +L E + GVT +
Sbjct: 562 SSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVD------------------ 603
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ +N ++ +G+ A+ +L M +P++ ++ +L++ L
Sbjct: 604 TMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHL 649
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ + GR+ EA +LM + +G+ D Y +MDG +G+++ A+ +L + N
Sbjct: 579 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 638
Query: 158 VVTLIQLLQRL 168
T LL+ L
Sbjct: 639 QFTYFILLRHL 649
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
K +K+ ++IF ++ + G +V + L+ AL + K F
Sbjct: 672 CKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDL 731
Query: 96 -------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++H G ++ A+E++ ++ + PD TY +M G C +GR +EA +L++E
Sbjct: 732 VLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDE 791
Query: 149 AIERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGK 191
ERG+ ++VT L+ M G P +T+N +IQ LC G+
Sbjct: 792 MTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQ 851
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A ++ M E+G P +++ LI+ L +
Sbjct: 852 GDDAENMVKEMVENGITPDDSTYISLIEGLTTE 884
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 52/172 (30%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
M GR EAYE++ + GL PDV+TY +++G CK G +A+E+ RGV V
Sbjct: 637 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 696
Query: 159 VTLIQLLQRLE----------------------------------------------MGH 172
VT L+ L MG
Sbjct: 697 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 756
Query: 173 I------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ P +T+N +++ LC +G++ +A L+ M E G P +++ LI
Sbjct: 757 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 808
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 102 GRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV+ A +++ ++ G+ P+ YTY ++ G+CKVGR +EA+++ +E + +G +
Sbjct: 533 GRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK---- 588
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P + +N +I C GK+ ALL M E G + ++++L+
Sbjct: 589 -------------PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHA 635
Query: 221 L 221
L
Sbjct: 636 L 636
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 18/155 (11%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELL 146
Q T S VGRV+EA ++ + G +KP+ Y A++ G+C G+ + A+
Sbjct: 555 QYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYR 614
Query: 147 NEAIERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGV 189
+ +ERGV V T L+ L M G P T+N +I C
Sbjct: 615 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE 674
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G + KAL + M G + ++ LI L ++
Sbjct: 675 GNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 709
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 17/147 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + MVGR++EA E+L ++ GLKPDV TY+ I+ +CK ++ A EL + +E+G
Sbjct: 406 LINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG 465
Query: 154 VTQNVVT---LIQLL---QRLEMGHI-----------PRTITFNNVIQALCGVGKIHKAL 196
V + +T LI++L +RL H+ P T+ ++I C G + AL
Sbjct: 466 VLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESAL 525
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
L M + G +P ++ +LI L +
Sbjct: 526 SLHDKMVKAGVLPDVVTYSVLINGLSK 552
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A + +K +KP V Y A+++G+C VGR +EA ELL+E +G+ +VVT
Sbjct: 379 GFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTY 438
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ Q LE G +P IT++++I+ LCG ++ A +L M +
Sbjct: 439 STIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIK 498
Query: 205 HGKIPSRTSHDMLI 218
G P ++ LI
Sbjct: 499 LGLQPDEFTYTSLI 512
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 36/201 (17%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA----------------VKFFS- 96
KE + I ++ G +V +N L+ A E D A V F S
Sbjct: 207 KEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSM 266
Query: 97 --NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
G++E+A ++ + +GL PD +Y ++ G+CK G S+EA+ + E ++G+
Sbjct: 267 VNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 326
Query: 155 TQNVVTLIQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGKIHKALL 197
+VVT L+ + + G++ R +TF +I C G + ALL
Sbjct: 327 MPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALL 386
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
+ M + PS ++ LI
Sbjct: 387 AVRGMKQCRIKPSVVCYNALI 407
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------- 165
+DG+ P+VYTY ++ C G EA+ +L + G NVVT L+
Sbjct: 183 SDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVD 242
Query: 166 --QRL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+RL E G P +TFN+++ +C GK+ A + M G P S++ L+
Sbjct: 243 GAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLV 302
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 72 VSDFNDLLMALVMLNEQD---TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128
+SD + L ++ L Q T H G VE A + + G+ PDV TY+
Sbjct: 486 LSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSV 545
Query: 129 IMDGFCKVGRSNEAMELL 146
+++G K R+ EA +LL
Sbjct: 546 LINGLSKSARAMEAQQLL 563
>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 418
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K SV FN L+ + ++ +G ++E + + + G
Sbjct: 158 VFDAITKWSLRPSVVSFNTLM----------------NGYIRLGDLDEGFRLKSAMHATG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + +EA E+LNE ++ G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L G +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 EIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLI 318
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 32/59 (54%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + GLKPD TYT IM+ FCK G A +LL E G VVT
Sbjct: 360 GRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVPGVVT 418
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T H G+V+ A E+ + + G PD+ TY ++ G C+ G +A +L+ E
Sbjct: 243 TFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEM 302
Query: 150 IERGVTQNVVTLIQLLQR------LEMGHIPRT-----------ITFNNVIQALCGVGKI 192
I +G+ + +T L+ LE+ R +T+ +I LC G+
Sbjct: 303 IMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRA 362
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A +L M G P ++ M++ +
Sbjct: 363 GDAEKMLREMLTVGLKPDNGTYTMIMNEF 391
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A +++ + GLKPD TYT ++DG CK G EL I + + VT
Sbjct: 290 GDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ ++ C G + A LL M
Sbjct: 350 TALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQR 409
Query: 205 HGKIPS 210
+G +P
Sbjct: 410 NGPVPG 415
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G EA +M + G+ PDV Y+++MDG C+ GR EA+E E RG++ +V T
Sbjct: 160 GMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTY 219
Query: 161 --LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R ++ G P TF +I LC GK+ +A +L LM+
Sbjct: 220 NSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHH 279
Query: 205 HGKIPSRTSHDMLIKKL 221
GK P +++ L+ L
Sbjct: 280 KGKEPDILTYNTLMNGL 296
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 48/253 (18%)
Query: 15 LLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNSIKKD 66
+++DS + E+LD+ P + +D + + LKE ++ F ++
Sbjct: 151 MIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGR 210
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV---------------------GRVE 105
G + V +N L+ L F +LMV G+V
Sbjct: 211 GISADVYTYNSLIHGLSRAGLWKEVTWFL--NLMVDRGFSPDAFTFTILIDGLCKEGKVG 268
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
EA ++L + + G +PD+ TY +M+G C VG+ +A +L +RG+ NV + L+
Sbjct: 269 EAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILI 328
Query: 166 Q------------RL--EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
RL EM G P T+T+N +I ALC G++ A L M G+
Sbjct: 329 NGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQF 388
Query: 209 PSRTSHDMLIKKL 221
+++ +L+ L
Sbjct: 389 LKLSTYCVLLDGL 401
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 34/170 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L+E ID+F SIKK ++ F+ LL + G++EEA+
Sbjct: 403 KNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCR----------------AGKLEEAW 446
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ + +GL+PD Y +++G C G +EA++LL + E+G
Sbjct: 447 KQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGC-------------- 492
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P +ITFN +IQ L +IH+A+ LL M P ML+
Sbjct: 493 ----LPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E +F ++ G S +N L+ AL GRV A
Sbjct: 333 KDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQ----------------SGRVRTAQ 376
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-- 166
++ + ++ G + TY ++DG CK G EA++L + N+ LL
Sbjct: 377 KLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGM 436
Query: 167 ----RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+LE G P TI +N +I LC G + +A+ LL+ M E G +P
Sbjct: 437 CRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDS 496
Query: 212 TSHDMLIKKL 221
+ +++I+ L
Sbjct: 497 ITFNVIIQNL 506
>gi|242041019|ref|XP_002467904.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
gi|241921758|gb|EER94902.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor]
Length = 558
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 34/146 (23%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+++F++++ G ++ +N L+ L VGR+EEA ++L +K+
Sbjct: 233 MEVFDAMRALGCEPTIRSYNSLVGGLCY----------------VGRLEEALDLLNKLKD 276
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
+ PD+YT+T ++DGFCKVGR+ EA + ++AI MG P
Sbjct: 277 SPMTPDIYTFTIVLDGFCKVGRTEEATAIFHDAI------------------GMGLSPTI 318
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLM 202
T+N ++ C G KA LL M
Sbjct: 319 FTYNALLNGHCKEGNPLKAFALLMEM 344
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 34/175 (19%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM 100
A+ +I P++ER+ + + + +D +VSD+ND+L AL + TAV F +
Sbjct: 115 ARDCAKRIMELPVEERVKVLDLLPRDDDALTVSDYNDILSALARAGDHATAVALFRAMPV 174
Query: 101 V----------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
G +EA + + G +P V T++A++ CK GR +AME
Sbjct: 175 APDAQSFATAVQCLCRQGAPDEAKLAIDEMVARGFRPSVATFSAVVGCLCKRGRVTKAME 234
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+ + +G P ++N+++ LC VG++ +AL LL
Sbjct: 235 VFDAM------------------RALGCEPTIRSYNSLVGGLCYVGRLEEALDLL 271
>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 643
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++E + ++ ++ GL+P+V TYT I+D FCK G A +L + G T NVVT
Sbjct: 239 RMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFT 298
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L++ L G P T+++N +I+ LC VG + A +L M +H
Sbjct: 299 ALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQH 358
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P+ ++ LI +
Sbjct: 359 GCFPNVRTYSTLIDGFSK 376
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG ++ A +L +++ G P+V TY+ ++DGF K G A+ + N+ G NVV
Sbjct: 342 VGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVV 401
Query: 161 LIQLL----QRLEMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ ++L P T+TFN +I++LC ++ +AL + M
Sbjct: 402 YTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMR 461
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
HG +P+ +++ LI L ++
Sbjct: 462 RHGCVPNGRTYNELIHGLFRE 482
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 33/188 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
LK I NS+++ G +V ++ L+ + A+ +++
Sbjct: 345 LKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWND--------------- 389
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---- 168
+ G KP+V YT ++D FCK N+A L+++ + N VT L++ L
Sbjct: 390 -MSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCR 448
Query: 169 ----------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
EM G +P T+N +I L G AL ++ M HG S +++
Sbjct: 449 RVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYN 508
Query: 216 MLIKKLDQ 223
++ L Q
Sbjct: 509 TVVSGLCQ 516
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 50/169 (29%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----- 154
MVG V Y+ N++ DG+ P+V+TY ++ C+ R A ++L+E +G
Sbjct: 139 MVGAVVLVYD---NMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDV 195
Query: 155 -TQNVVTLIQLLQRLE-----------------------------------------MGH 172
+V+++ L RL+ G
Sbjct: 196 TYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGL 255
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P IT+ ++ A C G++ A +L M G P+ + L++ L
Sbjct: 256 QPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGL 304
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +A M+ +++ G++ + TY ++ G C+ S EAM + + I +G+
Sbjct: 483 GNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQGIQ------ 536
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
P TF+ +I A C G++ A +L M
Sbjct: 537 ------------PNAFTFSAIIHAYCKEGEVRMAAWMLGAM 565
>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 576
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 34/206 (16%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ---------DT 90
+A R +D++ SP N+ D S+ D L A+ +L Q T
Sbjct: 167 EALRVLDRMGVSP--------NAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVT 218
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
V +A ++ ++N G KPDV TY ++ GFCK GR +EA+ L +
Sbjct: 219 CTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLP 278
Query: 151 ERGVTQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIH 193
G +V++ +L+ L G +P +TFN +I LC G +
Sbjct: 279 SYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLG 338
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIK 219
KAL +L +M +HG P+ S + LI+
Sbjct: 339 KALNVLEMMPKHGHTPNSRSFNPLIQ 364
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 43/212 (20%)
Query: 37 RSLQAQRFVDKI----------KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
R LQ++ + D + K S + + + +FN ++ G V +N L
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVL-------- 257
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+K F GR++EA L + + G +PDV ++ I+ C GR +AM+LL
Sbjct: 258 -----IKGFCKG---GRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLL 309
Query: 147 NEAIERGVTQNVVT-------------LIQLLQRLEM----GHIPRTITFNNVIQALCGV 189
+ +G +VVT L + L LEM GH P + +FN +IQ C
Sbjct: 310 ATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNG 369
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +A+ L +M G P ++++L+ L
Sbjct: 370 KGIDRAIEYLEIMVSRGCYPDIVTYNILLTAL 401
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 20/145 (13%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
S + G +EEA +L + G+ P+ TY A++ C G+ +AM++L ++
Sbjct: 155 LISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSK 211
Query: 154 VTQNVVTLIQLL----------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKAL 196
+VVT L+ Q +++ G P +T+N +I+ C G++ +A+
Sbjct: 212 CYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAI 271
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L + +G P SH+M+++ L
Sbjct: 272 RFLKKLPSYGCQPDVISHNMILRSL 296
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 18/150 (12%)
Query: 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
LN +++ ++ + G +EE L + N G PDV TA++ FCK+GR+ A +
Sbjct: 76 LNFEESEIRHLRRLIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQ 135
Query: 145 LLNEAIERGVTQNVVTL----------------IQLLQRLEMGHIPRTITFNNVIQALCG 188
++ E G +V + +++L R MG P T++ V+ +LC
Sbjct: 136 IMGILEESGAVIDVTSYNVLISGYCKSGEIEEALRVLDR--MGVSPNAATYDAVLCSLCD 193
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
GK+ +A+ +L + P + +LI
Sbjct: 194 RGKLKQAMQVLGRQLQSKCYPDVVTCTVLI 223
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V++A +L + + G P + +Y ++DG KVG++ A+ELL E +G+ +++T
Sbjct: 405 GKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITC 464
Query: 162 IQLLQRLEM-GHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L G + P +N++I LC + A+ L M
Sbjct: 465 TSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVA 524
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ ++ LIK + +
Sbjct: 525 KGCKPTEATYTTLIKGITYE 544
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 34/172 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L + +++ + K G + FN L+ D A+++ +MV R
Sbjct: 337 LGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYL--EIMVSR--------- 385
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
G PD+ TY ++ CK G+ ++A+ +L++ +G +
Sbjct: 386 -----GCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCS----------------- 423
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
P I++N VI L VGK A+ LL M G P + ++ L ++
Sbjct: 424 -PSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSRE 474
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 17/147 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + MVGR++EA E++ ++ G+KPDV TY+ I+ +CK G ++ A +L + +E G
Sbjct: 373 LINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENG 432
Query: 154 VTQNVVT---LIQLL---QRLEMGHI-----------PRTITFNNVIQALCGVGKIHKAL 196
V + +T LI++L +RL H+ P +T+ ++I C G + +AL
Sbjct: 433 VLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERAL 492
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
L M + G +P ++ +LI L +
Sbjct: 493 SLHDEMVKAGVLPDVVTYSVLINGLSK 519
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 36/201 (17%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA----------------VKFFS- 96
KE + + ++ G + + +N L+ A E D A V F S
Sbjct: 174 KEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSV 233
Query: 97 --NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
GR+E+A ++ + +GL PD +Y ++ G+CKVG S+EA+ + E +G+
Sbjct: 234 VNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGI 293
Query: 155 TQNVVTLIQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGKIHKALL 197
+VVT L+ + + G++ R ITF +I C G + ALL
Sbjct: 294 MPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALL 353
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
+ M + PS ++ LI
Sbjct: 354 AVREMRQCRIQPSVVCYNALI 374
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A + ++ ++P V Y A+++G+C VGR +EA EL+ E +GV +VVT
Sbjct: 346 GFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTY 405
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L Q LE G +P IT++++I+ LC ++ A +L M
Sbjct: 406 STILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMIS 465
Query: 205 HGKIPSRTSHDMLI 218
G P ++ LI
Sbjct: 466 LGLQPDEVTYTSLI 479
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
F+S+ DG +V +N L+ AL G +EA +L +++ G
Sbjct: 144 FFDSMLSDGVAPNVYTYNILVRALCGR----------------GHRKEALSVLRDMRGAG 187
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------RLE--- 169
P+ TY ++ FC+ G + A L++ E G+ N+VT ++ R+E
Sbjct: 188 CDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDAR 247
Query: 170 --------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G P +++N ++ C VG H+AL + M G +P + LI
Sbjct: 248 KVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLI 304
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 79 LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
+++L + ++ T H G VE A + + G+ PDV TY+ +++G K R
Sbjct: 463 MISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSAR 522
Query: 139 SNEAMELL 146
+ EA LL
Sbjct: 523 TKEAQRLL 530
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ E + +F S+ K G V +N L+ L+ ++D RV EA+E+
Sbjct: 164 VSEALKLFGSVLKQGYEPEVPTYNILIDGLL---KED-------------RVNEAFELFS 207
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-------LIQ-- 163
+ GL+PD TYT +DG CK GR +A+ +L + E+G +VV+ L +
Sbjct: 208 GLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEK 267
Query: 164 -------LLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
LL +E G P I+FN +I C GK KA+ M + G P+ +++
Sbjct: 268 RVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYN 327
Query: 216 MLIKKL 221
+L+ L
Sbjct: 328 ILVDGL 333
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 31/172 (18%)
Query: 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE 106
+ +A K+ + F + K G +V +N L+ L ++ GR++E
Sbjct: 298 QCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQE-------------GRIKE 344
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A + + G PDV TY+A++DG K G+ ++A LL A+E
Sbjct: 345 AITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLG-AME--------------- 388
Query: 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G IP T+N++I LCG+ K+ +AL L M E G +P ++ +I
Sbjct: 389 --AKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 20/140 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR+ +A + + G PDV TY ++ GFCKVG +EA+++ + A++RG +VVT
Sbjct: 24 GRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTY 83
Query: 161 --LI-------------QLLQRLEMGH-IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI ++LQR+ + +P +T+N+++ LC G++ +A +L+ +
Sbjct: 84 NALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIV---D 140
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ ++ LI L ++
Sbjct: 141 KGFSPNVITYSTLISGLCRE 160
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV+EA +L ++ G P+ ++ ++ G C+ G+ +AM E ++RGV VVT
Sbjct: 268 RVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYN 327
Query: 163 QLLQRL--------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
L+ L E G +P +T++ +I L GK+ A LL M
Sbjct: 328 ILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAM 387
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G IP+ +++ LI L
Sbjct: 388 EAKGCIPNVYTYNSLISGL 406
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------- 166
++ G P+ TY A++ G C GR ++A L I+ G + +VVT LL
Sbjct: 1 MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60
Query: 167 ----------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
++ G +P +T+N +I C K+ +A +L M +P +++
Sbjct: 61 LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120
Query: 217 LIKKL 221
L+ L
Sbjct: 121 LVNGL 125
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA ++ +++DG PDV TYT ++D C G+ ++AMEL + + VT
Sbjct: 278 GRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTY 337
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I +L + EM G+ P ITF ++ ALC G I +A LL +M +
Sbjct: 338 ITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRK 397
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ +++ LI L
Sbjct: 398 QGVLPNLHTYNTLISGL 414
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 96/241 (39%), Gaps = 46/241 (19%)
Query: 9 PTPFS-VLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKAS--------PLKERIDI 59
PT ++ +L +D +S + ++L+ E + + AS L+E I
Sbjct: 437 PTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVI 496
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLM----- 100
FN +K +G +N ++ + D A++ S N L+
Sbjct: 497 FNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYK 556
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV+EA++M +K+ L P V TY ++ G K G+ AMEL G
Sbjct: 557 AGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCP----- 611
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P TITFN ++ LC ++ AL +L+ M +P + + +I
Sbjct: 612 -------------PNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHG 658
Query: 221 L 221
L
Sbjct: 659 L 659
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + E + + ++K G ++ +N L+ L+ +N D A+ F+N +G V
Sbjct: 381 KAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVV---- 436
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
P YTY +D + K GRS++A+E + RG+ N+V L L
Sbjct: 437 ------------PTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSL 484
Query: 169 -EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
EMG + P ++T+N +++ G++ +A+ LL M E+ P
Sbjct: 485 AEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDI 544
Query: 212 TSHDMLIKKL 221
+ LI L
Sbjct: 545 IVINSLINTL 554
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 33/225 (14%)
Query: 4 SAANSPTPFSV-LLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNS 62
+A +P F+ LL+D+ +S E +L E Q K + + I I N
Sbjct: 818 NAGCAPDVFTYNLLLDAHGKSGKINELFELYE-------QMICSSCKPNTITHNIIIANL 870
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGL 119
+K + + ++ DL LV + T + L GR+EEA E+ + + G
Sbjct: 871 VKSNSLDKAL----DLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGC 926
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179
+P+ Y +++GF K G N A EL + G+ P ++
Sbjct: 927 RPNNAIYNILINGFGKTGDVNTACELFKRMVREGIR------------------PDLKSY 968
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+++ LC G++ AL + + G +++++I L +
Sbjct: 969 TSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRS 1013
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---- 160
E A+ + +KN G PDV+TY ++D K G+ NE EL + I N +T
Sbjct: 807 EMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNII 866
Query: 161 ------------LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ L L G P T+ ++ L G++ +A L M ++G
Sbjct: 867 IANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGC 926
Query: 208 IPSRTSHDMLIKKLDQ 223
P+ +++LI +
Sbjct: 927 RPNNAIYNILINGFGK 942
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 98 HLMV--GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
HL++ G EA EM + +GLKP + T++A+M K + LL E G+
Sbjct: 202 HLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLK 261
Query: 156 QNVVTL----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLL 198
N+ T ++++R+E G P +T+ +I ALC GK+ A+ L
Sbjct: 262 PNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMEL 321
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
M P R ++ ++ K
Sbjct: 322 FVKMKASSHKPDRVTYITMLDKF 344
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
++ ++E + +++ ++ G N + +N L++ N + G VE+A
Sbjct: 1012 RSHRIEEALTLYDEMQSRGINPDLFTYNSLIL----------------NLGVAGMVEQAG 1055
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++ ++ GL+P+V+TY A++ G+ G S+ A + + G + N T QL
Sbjct: 1056 KLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-------- 100
KA +E IF+++K+ G +N ++ + D A + +
Sbjct: 578 KAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVA 637
Query: 101 -----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ R++EAY + K+ G++ +V Y++++DGF KVGR +EA +L E
Sbjct: 638 TYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEM 697
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+++G+T NV T L+ L EM P T T++ +I LC V K
Sbjct: 698 MKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKY 757
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+KA + M + G +P+ ++ +I L
Sbjct: 758 NKAFVFWQEMQKQGLVPNVVTYTTMIAGL 786
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 22/139 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-AIERGVT----- 155
G V+ A++ +K+ GLKPD +YT+++ CK GR +EA EL + ER V
Sbjct: 266 GNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAY 325
Query: 156 -------------QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+N L+ L+ E G IP ++FN+++ L K+ +AL L M
Sbjct: 326 NTMIMGYGSAGQFENAYKLLDQLK--ERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAM 383
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ + P+ ++++++I L
Sbjct: 384 KKDAE-PNSSTYNIIIDML 401
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA E+ ++ + P Y Y ++ G+ G+ A +LL++ ERG +VV+
Sbjct: 301 GRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSF 360
Query: 162 ----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ L + ++ P + T+N +I LC GK+ +A ++ M
Sbjct: 361 NSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHA 420
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ + ++++ +L
Sbjct: 421 GLFPNLLTVNIMVDRL 436
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------- 98
A + + + +K+ G SV FN +L L + D A+ F
Sbjct: 335 AGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTY 394
Query: 99 -------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
M G+VEEAY + +++ GL P++ T ++D CK + A E+ A +
Sbjct: 395 NIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQ 454
Query: 152 RGVTQNVVTLIQLLQRL 168
RG N VT L+ L
Sbjct: 455 RGCNPNSVTYCSLIDGL 471
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRVE A ++ VK L+PD+ Y +D F K G + A + +E +G+ + V+
Sbjct: 231 GRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSY 290
Query: 162 IQLLQRL-EMGH----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L + G +P +N +I G+ A LL + E
Sbjct: 291 TSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKE 350
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G IPS S + ++ L ++
Sbjct: 351 RGCIPSVVSFNSILTCLGKK 370
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 37/211 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA---------VKFFSN-- 97
K + E + +F ++KKD S S +N ++ L M + + A F N
Sbjct: 369 KKRKVDEALTLFEAMKKDAEPNS-STYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLL 427
Query: 98 --HLMVGRV------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++MV R+ E AYEM G P+ TY +++DG K G ++A L
Sbjct: 428 TVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENM 487
Query: 150 IERGVTQNVVTLIQLLQ------RLEMGHI-----------PRTITFNNVIQALCGVGKI 192
++ G N V L++ R E GH P N + + G +
Sbjct: 488 LDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDV 547
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
K + + +G +P S+ +LI L +
Sbjct: 548 EKGRAIFEDIKGYGFLPDVRSYSILIHGLTK 578
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 21/155 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------- 98
K + E I + K G +V +N L+ ALV E + A+ F +
Sbjct: 683 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTY 742
Query: 99 ---------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
V + +A+ ++ GL P+V TYT ++ G KVG +A L
Sbjct: 743 TYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERF 802
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQ 184
G T + + L++ M H R I +V +
Sbjct: 803 KANGGTPDAASFNALIE--GMSHANRAIEAYHVFE 835
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQ 156
G VE+ + ++K G PDV +Y+ ++ G K G++ E + + ++G
Sbjct: 545 GDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAY 604
Query: 157 NVVT-----------LIQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLL 199
N V ++L+ +++ +P T+ T+ ++I L + ++ +A +L
Sbjct: 605 NAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLF 659
>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ +EM ++ G+ P++YTY +M+ CK GR+ +A ++ +E ERGV+ N+VT
Sbjct: 247 GIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTY 306
Query: 162 IQLLQRL-------EMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E + P IT+N +I C VGK+ KAL L +
Sbjct: 307 NTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKS 366
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 367 RGLSPSLVTYNVLV 380
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 94/201 (46%), Gaps = 36/201 (17%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVM---LNEQDTAVKFFSNHLM---------- 100
K+ +F+ +++ G + ++ +N L+ L NE + + ++++
Sbjct: 285 KDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTL 344
Query: 101 ------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
VG++ +A + ++K+ GL P + TY ++ GFC+ G ++ A +++ E ERG+
Sbjct: 345 IDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGI 404
Query: 155 ----------------TQNVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALL 197
+ N+ T IQL + E+G +P T++ +I C G++++A
Sbjct: 405 KPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASR 464
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
L M E P+ ++ +I
Sbjct: 465 LFKSMVEKMLEPNEVIYNTMI 485
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+++++L+ ++ G P+V YT ++DG CK G +A +L E + G+ N T
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTY 236
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G P T+N V+ LC G+ A + M E
Sbjct: 237 TVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRE 296
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G + +++ LI L ++
Sbjct: 297 RGVSCNIVTYNTLIGGLCRE 316
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181
DVY++ ++ G C+ G ++ +LL E E G + NVV +
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVV------------------IYTT 203
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+I C G+I KA L F M + G + + ++ +LI L
Sbjct: 204 LIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGL 243
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 37/223 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P + +D + K + E D+++ + G + V ++ L+ +L + + A+
Sbjct: 194 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGL 253
Query: 95 FSN-------------HLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
F+ ++V GRV+EA +L + G+KPDV TY ++MDG+C
Sbjct: 254 FNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCL 313
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMGH-IPRTIT 178
V + N+A + N + GVT NV + + L + + + IP +T
Sbjct: 314 VKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVT 373
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N++I LC GKI AL L+ M++ G + +++ ++ L
Sbjct: 374 YNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDAL 416
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 34/163 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
IFN++ + G +V +N ++ + + D A+ F M+ KN
Sbjct: 323 IFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKE--------------MHCKN-- 366
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
+ PDV TY +++DG CK G+ + A++L++E +RGV + IT
Sbjct: 367 IIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHD------------------KIT 408
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N+++ ALC ++ KA+ LL M + G P ++ +LI L
Sbjct: 409 YNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGL 451
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 18/122 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A +L +K++G++PD+YTYT ++DG CK GR +A + + + +G V
Sbjct: 421 QVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVY--- 477
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
T+ +IQ C KAL LL M ++G IP+ +++++I L
Sbjct: 478 ---------------TYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLF 522
Query: 223 QQ 224
++
Sbjct: 523 EK 524
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ A ++L V ++P+V Y I+D CKV NEA +L +E + +G++ +VVT
Sbjct: 174 VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVT 233
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
I L ++ I P TF+ ++ C G++ +A +L +M
Sbjct: 234 YSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMM 293
Query: 204 EHGKIPSRTSHDMLI 218
+ G P ++ L+
Sbjct: 294 KQGIKPDVVTYCSLM 308
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 77/188 (40%), Gaps = 36/188 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K + + I + ++ +G + FN L+ L + F+N L G A
Sbjct: 67 VKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNA 126
Query: 108 YEMLMNVKNDGLKPDVY-------------------TYTAIMDGFCKVGRSNEAMELLNE 148
+ +K LK ++ Y +++G CKVG+++ A++LL
Sbjct: 127 ITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRR 186
Query: 149 AIERGVTQNVV---TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGK 191
+ V NVV T+I + ++++ G P +T++ +I C +GK
Sbjct: 187 VDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGK 246
Query: 192 IHKALLLL 199
++ A+ L
Sbjct: 247 LNDAIGLF 254
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 36/212 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K +K+ ++IF ++ + G +V + L+ AL + K F
Sbjct: 299 KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLV 358
Query: 96 ------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++H G ++ A+E++ ++ + PD TY +M G C +GR +EA +L++E
Sbjct: 359 LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 418
Query: 150 IERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKI 192
ERG+ ++VT L+ M G P +T+N +IQ LC G+
Sbjct: 419 TERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQG 478
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A ++ M E+G P +++ LI+ L +
Sbjct: 479 DDAENMVKEMVENGITPDDSTYISLIEGLTTE 510
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 52/172 (30%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
M GR EAYE++ + GL PDV+TY +++G CK G +A+E+ RGV V
Sbjct: 263 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 322
Query: 159 VTLIQLLQRLE----------------------------------------------MGH 172
VT L+ L MG
Sbjct: 323 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 382
Query: 173 I------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ P +T+N +++ LC +G++ +A L+ M E G P +++ LI
Sbjct: 383 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLI 434
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 102 GRVEEAYEMLMNVK-NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV+ A +++ ++ G+ P+ YTY ++ G+CKVGR +EA+++ +E + +G +
Sbjct: 159 GRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK---- 214
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P + +N +I C GK+ ALL M E G + ++++L+
Sbjct: 215 -------------PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHA 261
Query: 221 L 221
L
Sbjct: 262 L 262
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 18/155 (11%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELL 146
Q T S VGRV+EA ++ + G +KP+ Y A++ G+C G+ + A+
Sbjct: 181 QYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYR 240
Query: 147 NEAIERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGV 189
+ +ERGV V T L+ L M G P T+N +I C
Sbjct: 241 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE 300
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G + KAL + M G + ++ LI L ++
Sbjct: 301 GNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 335
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------- 98
+ E ++ + +++ G ++ L+ L + D A+K F ++
Sbjct: 247 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 306
Query: 99 -----LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
GR++EA ++ ++ + +PDV T+TA+MDG CK R EA ++L +R
Sbjct: 307 LIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 366
Query: 154 VTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKAL 196
T NV+T L+ L + G + P +T+N++I C + AL
Sbjct: 367 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 426
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
LL+ M G +P +++ LI L
Sbjct: 427 LLMEEMTATGCLPDIITYNTLIDGL 451
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 29/162 (17%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
ERID+ ++ F+D+L V L + T + G V++A +L +
Sbjct: 490 ERIDMARTL-----------FDDMLKQAV-LPDVVTFSTLVEGYCNAGLVDDAERLLEEM 537
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------ 168
PDVYTYT+++DGFCKVGR EA +L +RG NVVT L+
Sbjct: 538 VASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKP 597
Query: 169 --------EM---GHIPRTITFNNVIQALCGVGKIHKALLLL 199
EM G P IT+ ++I CG G + +A +L
Sbjct: 598 TVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKIL 639
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 48/226 (21%)
Query: 7 NSPTPFSVL---LVDSPSRSPSAAESLDLKENPRSLQAQR-------FVDKI-KASPLKE 55
+ P P + + ++ + ++ + A++LD RS++ ++ +D + KA+ L E
Sbjct: 88 SGPVPDAAIYNFVIHALCKARNTAKALDYF---RSMECEKNVITWTIMIDGLCKANRLPE 144
Query: 56 RIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
F +KK GT + +N V++N V +V AY +L +K
Sbjct: 145 ATTYFAKMKKKGTVPNEWTYN------VLIN----------GFCKVHKVHRAYLLLKEMK 188
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
GL P+V TY+ ++ GFC+ + + A +L + +E G +P
Sbjct: 189 ESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGC------------------MPN 230
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+T+N ++ LC G + +A LL M E G P + S+D L+ L
Sbjct: 231 LVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGL 276
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 49/181 (27%)
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
+ F L R++E +L N G+ P+V+TY ++ G CK G ++A ELL E E
Sbjct: 29 RLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMRES 88
Query: 153 G--------------------------------VTQNVVTLIQLLQRL------------ 168
G +NV+T ++ L
Sbjct: 89 GPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEATTY 148
Query: 169 -----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+ G +P T+N +I C V K+H+A LLL M E G P+ ++ +I +
Sbjct: 149 FAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR 208
Query: 224 Q 224
Q
Sbjct: 209 Q 209
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 37/225 (16%)
Query: 31 DLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
D P + +D + K +++ ++F + G +V +N L+ M N D
Sbjct: 364 DRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVD 423
Query: 90 TAVKFFS--------------NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
+A+ N L+ GR EA + ++K PDV TY+ ++
Sbjct: 424 SALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLI 483
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------QRL--EM---GHI 173
GFCK+ R + A L ++ +++ V +VVT L+ +RL EM
Sbjct: 484 GGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCS 543
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T+ +++ C VG++ +A +L M + G P+ ++ LI
Sbjct: 544 PDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALI 588
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 36/199 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMVGRV 104
+ +K+ G +V ++ ++ + DTA K F N L+ G
Sbjct: 183 LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 242
Query: 105 -----EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+EAYE+L ++ GL+PD ++Y +M G CK G+ + A+++ + +VV
Sbjct: 243 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 302
Query: 160 ---TLI-------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
TLI +L +++ E P +TF ++ LC ++ +A +L M
Sbjct: 303 AYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 362
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ P+ ++ LI L
Sbjct: 363 EDRNCTPNVITYSSLIDGL 381
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 101 VGRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G +EEA ++L ++ D K D++ Y +MDG C+ GR + A+ELL EAI++
Sbjct: 629 TGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELL-EAIKQS------ 681
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTSHDMLI 218
G PR + +I+ LC ++ KA+ +L M K P+ +++ +I
Sbjct: 682 -----------GTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVI 730
Query: 219 KKLDQQ 224
++L ++
Sbjct: 731 QELARE 736
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 18/107 (16%)
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
K G +VYTY + + + R +E +L G+T NV
Sbjct: 16 KQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNV---------------- 59
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ VIQ LC G + KA LL M E G +P ++ +I L
Sbjct: 60 --FTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHAL 104
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------- 98
+ E ++ + +++ G ++ L+ L + D A+K F ++
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 187
Query: 99 -----LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
GR++EA ++ ++ + +PDV T+TA+MDG CK R EA ++L +R
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 247
Query: 154 VTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKAL 196
T NV+T L+ L + G + P +T+N++I C + AL
Sbjct: 248 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 307
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
LL+ M G +P +++ LI L
Sbjct: 308 LLMEEMTATGCLPDIITYNTLIDGL 332
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 23/190 (12%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLN 86
L + R+ +A R +KA + ++ + K + + + + F+D+L V L
Sbjct: 332 LCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAV-LP 390
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+ T + G V++A +L + PDVYTYT+++DGFCKVGR EA +L
Sbjct: 391 DVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVL 450
Query: 147 NEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGV 189
+RG NVVT L+ EM G P IT+ ++I CG
Sbjct: 451 KRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGT 510
Query: 190 GKIHKALLLL 199
G + +A +L
Sbjct: 511 GDLEEARKML 520
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 34/174 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA+ L E F +KK GT + +N V++N F H +V A
Sbjct: 18 CKANRLPEATTYFAKMKKKGTVPNEWTYN------VLIN------GFCKVH----KVHRA 61
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y +L +K GL P+V TY+ ++ GFC+ + + A +L + +E G
Sbjct: 62 YLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGC------------- 108
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P +T+N ++ LC G + +A LL M E G P + S+D L+ L
Sbjct: 109 -----MPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGL 157
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 37/225 (16%)
Query: 31 DLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
D P + +D + K +++ ++F + G +V +N L+ M N D
Sbjct: 245 DRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVD 304
Query: 90 TAVKFFS--------------NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
+A+ N L+ GR EA + ++K PDV TY+ ++
Sbjct: 305 SALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLI 364
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------QRL--EM---GHI 173
GFCK+ R + A L ++ +++ V +VVT L+ +RL EM
Sbjct: 365 GGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCS 424
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T+ +++ C VG++ +A +L M + G P+ ++ LI
Sbjct: 425 PDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALI 469
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 36/199 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMVGRV 104
+ +K+ G +V ++ ++ + DTA K F N L+ G
Sbjct: 64 LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 123
Query: 105 -----EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+EAYE+L ++ GL+PD ++Y +M G CK G+ + A+++ + +VV
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 183
Query: 160 TLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLM 202
L+ L + G + P +TF ++ LC ++ +A +L M
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 243
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ P+ ++ LI L
Sbjct: 244 EDRNCTPNVITYSSLIDGL 262
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181
+V T+T ++DG CK R EA + ++G +P T+N
Sbjct: 6 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGT------------------VPNEWTYNV 47
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+I C V K+H+A LLL M E G P+ ++ +I +Q
Sbjct: 48 LINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQ 90
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 101 VGRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G +EEA +ML ++ D K D++ Y +MDG C+ GR + A+ELL EAI++
Sbjct: 510 TGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELL-EAIKQS------ 562
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTSHDMLI 218
G PR + +I+ LC ++ KA+ +L M K P+ +++ +I
Sbjct: 563 -----------GTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVI 611
Query: 219 KKLDQQ 224
++L ++
Sbjct: 612 QELARE 617
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T L +GR++EA L G PD TYT+I+DG CK+GR E E +E
Sbjct: 291 TYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM 350
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
RG + VT L+ Q L+ G + T+T+N ++ LC G++
Sbjct: 351 RNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRV 410
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+A M E G + + ++ L+
Sbjct: 411 AEAYATFLAMEERGCVATVVTYSALM 436
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRVEEA + +++ +G +PD + YTA++ G K+G+ +EA+ LN+ +E G + V
Sbjct: 160 GRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVE-- 217
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
P + N VI+ LC G + AL
Sbjct: 218 ------------PDVVIHNLVIRQLCASGNLEDAL 240
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EAY + ++ G V TY+A+MDGFC G + A+EL ++RG N+V
Sbjct: 408 GRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLV-- 465
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++N +I+ LC GK+ KA + + P + + + L
Sbjct: 466 ----------------SYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGL 509
Query: 222 DQQ 224
Q+
Sbjct: 510 CQR 512
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R EEA + + P ++TYT+++DGF K+GR +EA+ L EA+ER
Sbjct: 269 RTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVER---------- 318
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G IP +T+ ++I LC +G++ + M G P ++ LI
Sbjct: 319 --------GFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALI 366
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 21/140 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV++A+++L + P TYTA++DG K GR +EAM +L + +E+G + + T
Sbjct: 91 RVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYT 150
Query: 163 QLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++ L G P + +I L +GK+ +AL+ L M E+
Sbjct: 151 VVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVEN 210
Query: 206 GKI----PSRTSHDMLIKKL 221
G P H+++I++L
Sbjct: 211 GCARGVEPDVVIHNLVIRQL 230
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA+ +L G +PD TY +DG CK R ++A +LL + E+
Sbjct: 56 RLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKC-------- 107
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
+P T+T+ ++ L G++ +A+ +L M E G P+ ++ ++I L
Sbjct: 108 ----------LPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLS 157
Query: 223 Q 223
+
Sbjct: 158 K 158
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---T 160
V + E+ ++ + G P++++Y+ +MDG C+ G +E+ +E + RGV +VV T
Sbjct: 516 VGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNT 575
Query: 161 LIQLL-------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
LI+ L + LE P ++ +++ AL ++ +A LL F M G
Sbjct: 576 LIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLLDALSRCERMEEARLLSFHMKLQGC 635
Query: 208 IPSRTSHDMLIKKL 221
P +D+ ++ L
Sbjct: 636 APRH--YDLTVRFL 647
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 21/147 (14%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+++F S+ GT+ ++ ++ L+ + + ++ F H MV R
Sbjct: 520 VELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIF--HEMVSR------------- 564
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV--TQNVVTLIQLLQRLEMGHIP 174
G+ PDV + ++ C GR +EA+E+ E R + +L+ L R E
Sbjct: 565 -GVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLLDALSRCERMEEA 623
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFL 201
R ++F+ +Q G H L + FL
Sbjct: 624 RLLSFHMKLQ---GCAPRHYDLTVRFL 647
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNE-----------AIERGVT--QNVVTLIQLLQR- 167
D TA+++G CK G+ + AM LL+E + G+ + + +L+R
Sbjct: 8 DTRVCTALLNGLCKTGQLDRAMLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERA 67
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G P +T+N I LC ++ A LL M E +P+ ++ L+ L
Sbjct: 68 VRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGL 121
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA EM + GL+PD TYTA++DG+CK G EA + N+ +++G+T NVVT
Sbjct: 396 GKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTY 455
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L L EM G P T+N ++ LC +G I + + L+ M
Sbjct: 456 TALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDL 515
Query: 205 HGKIPSRTSHDMLI 218
G P ++ L+
Sbjct: 516 AGFYPDTITYTTLM 529
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 18/161 (11%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
FN++L+ + +E T + G ++EA+ + + GL P+V TYTA+ DG C
Sbjct: 405 FNEMLVKGLEPDEV-TYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLC 463
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEM-GHIPRTI 177
K G + A ELL+E +G+ NV T ++L++ +++ G P TI
Sbjct: 464 KNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTI 523
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ ++ A C +G++ KA LL +M P+ + ++L+
Sbjct: 524 TYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLM 564
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 27/203 (13%)
Query: 43 RFVDKIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALV---MLNEQDTAVKFF 95
+ VD++K LK I+N+I K+G V + LL + + +
Sbjct: 298 KLVDELKGKGLKPDEYIYNNIILLLCKNG---EVVEAEQLLRGMRKWGVFPDNVVYTTVI 354
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S +G V A ++ ++ + PD+ TYT+++ G CK G+ EA E+ NE + +G+
Sbjct: 355 SGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLE 414
Query: 156 QNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+ VT L+ Q ++ G P +T+ + LC G+I A L
Sbjct: 415 PDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANEL 474
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L M G P+ +++ ++ L
Sbjct: 475 LHEMSRKGLQPNVYTYNTIVNGL 497
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ +G + +A+E+L + N L+P + T+ +M+GFC G + L+ +E+G+ N
Sbjct: 532 YCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPN 591
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
T L+++ + G +P + T+N +I+ C + +A L
Sbjct: 592 ATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHK 651
Query: 201 LMYEHGKIPSRTSHDMLIK 219
M E G + ++D LI+
Sbjct: 652 EMVEKGYSVTAATYDALIR 670
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 33/183 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+K + +F + G W+ N +L L L G+V EA+ +L+
Sbjct: 223 IKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQL----------------GKVREAHNLLV 266
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG------VTQNVVTLI---- 162
+ + G PDV +Y ++ G+C++G ++ ++L++E +G + N++ L+
Sbjct: 267 QMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNG 326
Query: 163 ------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
QLL+ + + G P + + VI C +G + A L M +P ++
Sbjct: 327 EVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYT 386
Query: 216 MLI 218
+I
Sbjct: 387 SVI 389
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +EA E+ +K G+ PDV +YT+++ GFC+ G+ +A L NE ++ GV +V T
Sbjct: 496 CGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTT 555
Query: 161 ---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI +L + ++ G IP T+T+ +++ LC +I +A L M
Sbjct: 556 FSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQ 615
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
+ G +P ++ L+K L Q
Sbjct: 616 KLGCLPDVVTYGTLMKGLCQ 635
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
R +EA E+ +K G+ PDV +YT ++ GFC G+ +A L NE ++ G+ +V T
Sbjct: 317 REDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSS 376
Query: 161 -LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LI +L + ++ G IP +T +++ LC +I KA L M +
Sbjct: 377 VLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKL 436
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G +P+ + L+K L Q
Sbjct: 437 GCMPNVVTCATLMKGLCQ 454
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
R +EA E+ +K G+ PDV +YT+++ GFC+ G+ +A L NE ++ G+ +V T
Sbjct: 136 REDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSS 195
Query: 161 -LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LI +L + ++ G I +T++ +I+ LC +I +A L M +
Sbjct: 196 MLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKL 255
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P ++ L+K L Q
Sbjct: 256 GCRPDAIAYGTLMKGLCQ 273
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 23/143 (16%)
Query: 102 GRVEEAYEMLMNVKND------GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G ++ A E+ N+ +D KP+ +Y+ I+DG CK GR +EA EL E GV
Sbjct: 456 GNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVI 515
Query: 156 QNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+V++ L+ + +++G P TF+ +I LC GK+ +A L
Sbjct: 516 PDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANEL 575
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L +M + G IP+ ++ L+K L
Sbjct: 576 LEVMIQRGCIPNTVTYTTLVKGL 598
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 18/96 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +EA E+ +K G+ P+V +YT+++ GFC+ G+ +A L NE +++GV N V
Sbjct: 678 GREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAV-- 735
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
T++ +I C G+I KAL
Sbjct: 736 ----------------TYSVMIHGFCKEGQIDKALF 755
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 17/98 (17%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH----- 172
G++PDV T ++D FCK G+ EA ELL ++RG ++VT L++ L M H
Sbjct: 5 GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEA 64
Query: 173 ------------IPRTITFNNVIQALCGVGKIHKALLL 198
P I + +++ LC GKI+ AL L
Sbjct: 65 TQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHL 102
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ E+A + + + G++PDV T + ++D CK G+ EA +LL I+RG +VVT
Sbjct: 351 GKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTC 410
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLL 198
L++ L M H +P +T +++ LC G I AL L
Sbjct: 411 TTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALEL 464
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 23/145 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM----ELLNEAIERGV---- 154
R+ EA ++ M++K G +PD Y +M G C+ G+ N A+ E+LN+ + G+
Sbjct: 60 RISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKP 119
Query: 155 TQNVVTLI--------------QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLL 199
T ++I +L + ++ G +P I++ ++I C GK KA L
Sbjct: 120 TLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLF 179
Query: 200 FLMYEHGKIPSRTSHDMLIKKLDQQ 224
M + G T+ MLI L ++
Sbjct: 180 NEMLDVGIRSDVTTSSMLIDILCKE 204
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ E+A + + + G++ DV T + ++D CK G+ EA ELL I+RG ++VT
Sbjct: 170 GKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTY 229
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLL 198
L++ L M H P I + +++ LC G I+ AL L
Sbjct: 230 STLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQL 283
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 29/146 (19%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM----ELLNEAIERGVTQNV 158
R+ EA + M+++ G +PD Y +M G C+ G N A+ E+LN+ G+ +
Sbjct: 241 RISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGI-KCK 299
Query: 159 VTLI-------------------QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLL 198
TLI +L + ++ G +P I++ +I C GK KA L
Sbjct: 300 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 359
Query: 199 LFLMYEHGKIPSRTSH----DMLIKK 220
M + G P T+ DML KK
Sbjct: 360 FNEMLDVGIQPDVTTSSVLIDMLCKK 385
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +EA E+ +K G+ PDV +YT+++ GFC+ G+ +A L NE ++ GV +V T
Sbjct: 652 CGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTT 711
Query: 161 ---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI +L + ++ G IP T+T+ +++ LC +I +A L M
Sbjct: 712 FSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQ 771
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
+ G +P ++ L+K L Q
Sbjct: 772 KLGCLPDVVTYGTLMKGLCQ 791
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 23/143 (16%)
Query: 102 GRVEEAYEMLMNVKND------GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G ++ A E+ N+ +D KP+ +Y+ I+DG CK GR +EA EL E GV
Sbjct: 612 GNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVI 671
Query: 156 QNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+V++ L+ + +++G P TF+ +I LC GK+ +A L
Sbjct: 672 PDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANEL 731
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L +M + G IP+ ++ L+K L
Sbjct: 732 LEVMIQRGCIPNTVTYTTLVKGL 754
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
R +EA E+ +K G+ PDV +YT ++ GFC G+ +A L NE ++ G+ +V T
Sbjct: 473 REDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSS 532
Query: 161 -LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LI +L + ++ G I +T +++ LC +I KA L M +
Sbjct: 533 VLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKL 592
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G +P+ + L+K L Q
Sbjct: 593 GCMPNVVTCATLMKGLCQ 610
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
R +EA E+ +K G+ PDV +YT+++ GFC G+ +A L NE ++ G+ +V T
Sbjct: 180 REDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSG 239
Query: 161 -----------LIQLLQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+I+ + LE+ G I +T++ +I+ LC +I +A L M +
Sbjct: 240 VLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKL 299
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P ++ L+K L Q
Sbjct: 300 GCRPDAIAYGTLMKGLCQ 317
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 18/96 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +EA E+ +K G+ P+V +YT+++ GFC+ G+ +A L NE +++GV N V
Sbjct: 834 GREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAV-- 891
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
T++ +I C G+I KAL
Sbjct: 892 ----------------TYSVMIHGFCKEGQIDKALF 911
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 24/145 (16%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM----ELLNEAIERGVTQ-- 156
R+ EA ++ M++K G +PD Y +M G C+ G+ N A+ E+LN+ + G+
Sbjct: 285 RISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIR 344
Query: 157 -NVVT---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+V T LI +L + ++ G I +T++ +I+ LC +I +A L
Sbjct: 345 PDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWL 404
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQ 223
M + G P ++ L+K L Q
Sbjct: 405 FMSMQKLGCRPDAITYGTLMKGLCQ 429
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ E+A + + + G++PDV T ++D FCK G+ EA ELL + RG ++VT
Sbjct: 214 GKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTY 273
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLL 198
L++ L M H P I + +++ LC GKI+ AL L
Sbjct: 274 STLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHL 327
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 36/175 (20%)
Query: 48 IKASPLKERID----IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
IK +K RI +F S+KK G + L+ L + + A+
Sbjct: 277 IKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQ------- 329
Query: 104 VEEAYEMLMNVKNDGLK---PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
EML + G+K PDV T + ++D CK G+ EA ELL I+RG ++VT
Sbjct: 330 -----EMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVT 384
Query: 161 LIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLL 198
L++ L M H P IT+ +++ LC G I+ AL L
Sbjct: 385 YSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQL 439
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ E+A + + + G++PDV T + ++D CK G+ EA +LL I+RG +VVT
Sbjct: 507 GKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTC 566
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLL 198
L++ L M H +P +T +++ LC G I AL L
Sbjct: 567 TTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALEL 620
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 25/140 (17%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM----ELLNEAIERGVTQNV 158
R+ EA + M+++ G +PD TY +M G C+ G N A+ E+LN+ G+ +
Sbjct: 104 RISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGI-KCK 162
Query: 159 VTLI-------------------QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLL 198
TLI +L + ++ G +P I++ ++I C GK KA L
Sbjct: 163 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCL 222
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
M + G P T+ +LI
Sbjct: 223 FNEMLDVGIQPDVTTSGVLI 242
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM----ELLNEAIERGVTQNV 158
R+ EA + M+++ G +PD TY +M G C+ G N A+ E+LN+ G+ +
Sbjct: 397 RISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGI-KCK 455
Query: 159 VTLI-------------------QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLL 198
TLI +L + ++ G +P I++ +I C GK KA L
Sbjct: 456 PTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 515
Query: 199 LFLMYEHGKIPSRTSH----DMLIKK 220
M + G P T+ DML KK
Sbjct: 516 FNEMLDVGIQPDVTTSSVLIDMLCKK 541
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 26/124 (20%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTY---------TAIMDGFCKVGRSNEAMELLNEAIE 151
V RV E + + G PD+ TY + ++D CK G+ EA ELL I+
Sbjct: 23 VKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQ 82
Query: 152 RGVTQNVVTLIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHK 194
RG ++VT L++ L M H P IT+ +++ LC G I+
Sbjct: 83 RGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINI 142
Query: 195 ALLL 198
AL L
Sbjct: 143 ALQL 146
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT------------LIQLL 165
GL PD +T+ +++ C V R NE + + + RG ++VT LI +L
Sbjct: 5 GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDIL 64
Query: 166 QR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ ++ G I +T++ +I+ LC +I +A L M + G P
Sbjct: 65 CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA 124
Query: 212 TSHDMLIKKLDQ 223
++ L+K L Q
Sbjct: 125 ITYGTLMKGLCQ 136
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +++ + + I +G +++ +N LL L + GR+EEA
Sbjct: 177 KNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKM----------------GRLEEAI 220
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++L + ++G PDV TYT+++DG K RS EA +L E RG+ + V L++ L
Sbjct: 221 DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGL 280
Query: 169 -----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
G +P +T + +I LC G+I A+ + M G P+
Sbjct: 281 LQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNE 340
Query: 212 TSHDMLIKKL 221
+ LI L
Sbjct: 341 VVYSALIHGL 350
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 36/201 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
KA + + IF S++ G + ++ L+ L + D A++ +
Sbjct: 316 CKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT 375
Query: 98 ---HLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++++ G VE A + G KPDVYTY ++ GFCK G ++ A + ++
Sbjct: 376 ITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDD 435
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
+ NVVT L+ L E G P + +++++ LC GK
Sbjct: 436 MSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGK 495
Query: 192 IHKALLLLFLMYEHGKIPSRT 212
+ +L M G S+T
Sbjct: 496 LEGGCMLFDEMERSGVANSQT 516
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 80 MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGR 138
+A L + +T + + + EEA+ ++ ++ D G+ P + T+ ++ G CK G+
Sbjct: 86 LATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGK 145
Query: 139 SNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNN 181
AM+ G T ++ T + L++++ G P T+N
Sbjct: 146 VLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNA 205
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
++ LC +G++ +A+ LL + ++G P ++ LI L ++
Sbjct: 206 LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKE 248
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ A + +++ GL P+ Y+A++ G CK + + A+E+L + + T
Sbjct: 319 GRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCT------ 372
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P TIT+N +I LC G + A M E G P ++++L+
Sbjct: 373 ------------PDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILV 417
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 21/146 (14%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF----SNH----------LMVG-- 102
F+ + + G V +N L+ D A F S+H L+ G
Sbjct: 397 FFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLC 456
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
++ +A ++K G PD + Y++++DG CK G+ L +E +ER N
Sbjct: 457 KRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDE-MERSGVANSQ 515
Query: 160 TLIQLLQRL-EMGHIPRTITFNNVIQ 184
T +L+ L + + ++ N I+
Sbjct: 516 TRTRLIFHLCKANRVDEAVSLFNAIR 541
>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 737
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 21/136 (15%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T V S H G +EA E L + G + D Y+AI++ FC GR + A E++NE
Sbjct: 316 NTLVHMLSKH---GHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNE 372
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
I +G + P +T+ V+ LC VGK+ +A +L MY+HG
Sbjct: 373 MITKGCS------------------PDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCK 414
Query: 209 PSRTSHDMLIKKLDQQ 224
P+ S+ L+ L Q
Sbjct: 415 PNTVSYTALLNGLCQH 430
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M GR++ A E++ + G PDV TYTA+++G CKVG+ EA ++L + + G N V
Sbjct: 359 MQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTV 418
Query: 160 TLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ LL L E P IT++ V+ L GK+ +A ++ M
Sbjct: 419 SYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREM 478
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P+ ++LIK L
Sbjct: 479 LTKGFFPTPVEINLLIKSL 497
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 20/89 (22%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA M + GL P TY A++ +CK+GR E ++LL + + R +
Sbjct: 571 GRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLSRSKCRT---- 626
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVG 190
+N VI+ LC G
Sbjct: 627 ----------------AYNQVIEKLCNFG 639
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 76/185 (41%), Gaps = 35/185 (18%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM 100
A V +A L+ + + ++K G ++ N + LVM N+ + A++F +
Sbjct: 175 AHVMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQL 234
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG + P+V TY ++ G+C + + AMEL+ E +G
Sbjct: 235 VG----------------ITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCP----- 273
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTSHDMLIK 219
P +++ V+ LC +I + L+ M + K+ P + +++ L+
Sbjct: 274 -------------PDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVH 320
Query: 220 KLDQQ 224
L +
Sbjct: 321 MLSKH 325
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 39/192 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
+ L E D+ + G + + N L+ +L + + + A KF L G
Sbjct: 464 REGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAV 523
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++ A +L ++ + PD T+TAI+D K GR EA
Sbjct: 524 NFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEAT------ 577
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ ++ L+ G P +T+ VI C +G++ + + LL M K
Sbjct: 578 ------------VYTMKMLKKGLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLSRSK-- 623
Query: 210 SRTSHDMLIKKL 221
RT+++ +I+KL
Sbjct: 624 CRTAYNQVIEKL 635
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 18/106 (16%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
+ PDV+TY ++DG CK ++++A E+L+E ++RGVT P T+T
Sbjct: 6 VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVT------------------PDTVT 47
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
FN+++ LC GK +A LL +M E PS +++ LI L +Q
Sbjct: 48 FNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQ 93
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-- 161
V+ A ++ + G PDV TY+ + DG CK GR +EA EL+ E G T N+VT
Sbjct: 96 VDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNT 155
Query: 162 --------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+LL+ L G +P +T+ ++ LC G++ KAL ++ M + G
Sbjct: 156 LIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRG 215
Query: 207 KIPSRTSHDMLIKKL 221
PS ++ L++ L
Sbjct: 216 CTPSVITYTALMEGL 230
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 105/216 (48%), Gaps = 31/216 (14%)
Query: 34 ENPRSLQAQRFVDKIKASPLKERIDIFNSIK----KDGTNWSVSD-FNDLLMALVMLN-- 86
++ R+ +AQ+ VD I+ +P ID++N++ K+G + + F D+ + N
Sbjct: 267 KSSRTKEAQKVVDGIRGTPY---IDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIK 323
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+ + H G+V+EA+ L ++ + G PDV +Y I+DG K + EA ++L
Sbjct: 324 TYNIVMDGLCKH---GKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVL 380
Query: 147 NEAIERGVTQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGV 189
++ I+ G+ + VT L+ + ++ G P +T+N +I L
Sbjct: 381 DQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQT 440
Query: 190 GKIHKALLLLFLMYEHGKIPSR-TSHDMLIKKLDQQ 224
++ A L+ M +G + S T+++ +I +L ++
Sbjct: 441 NRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKE 476
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 23/160 (14%)
Query: 85 LNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
+NE+ A F+ ++++ + ++A EML + + G+ PD T+ +IMDG CK G+
Sbjct: 1 MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNN 181
A LL ER + T L+ L G +P +T++
Sbjct: 61 FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ LC G+I +A L+ M +G P+ +++ LI L
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGL 160
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 18/93 (19%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ E+AYE+L + + G PDV TYT I+DG CK GR ++A++++ ++RG T
Sbjct: 165 KTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCT------- 217
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
P IT+ +++ LC G++ +A
Sbjct: 218 -----------PSVITYTALMEGLCRTGRVDEA 239
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 49/169 (28%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+++A +M+ + G P V TYTA+M+G C+ GR +EA + E + + T + +
Sbjct: 199 GRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAY 258
Query: 162 IQLLQ--------------------------------------RLE-----------MGH 172
+ L+ RL+ G
Sbjct: 259 VSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGC 318
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P T+N V+ LC GK+ +A L M+ G +P S++++I L
Sbjct: 319 VPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGL 367
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
GL +T+ ++D F K R +EA+ LL ++RG + P I
Sbjct: 561 GLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCS------------------PSVI 602
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
T+N VI LC + K+ KA L M G + S S+ +LI L Q
Sbjct: 603 TYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQ 649
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 18/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA----IERGVTQN 157
G +++A ++ ++ G++ + TY +D CK GR +EA LL+E E T
Sbjct: 477 GCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTV 536
Query: 158 VVTLIQLLQRLEMGHIPRTI-----------TFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ L + Q + R + TFN +I A ++ +AL LL LM + G
Sbjct: 537 IIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRG 596
Query: 207 KIPSRTSHDMLIK---KLDQ 223
PS +++M+I KLD+
Sbjct: 597 CSPSVITYNMVITCLCKLDK 616
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +L + G P V TY ++ CK+ + ++A EL +E RG+
Sbjct: 581 RLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGI-------- 632
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+ ++++ +I LCG G+ +AL +L
Sbjct: 633 ----------VASSVSYTVLIYGLCGQGRGKEALQVL 659
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 34/181 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
KAS KE + + + + G +N L+ D AV N + G
Sbjct: 369 KASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNV 428
Query: 103 -------------RVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
R+ +AYE++ ++N + TY I+D CK G +A+ L++
Sbjct: 429 TYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDH 488
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHK 194
GV N VT + RL EM + +++ VI LC ++ +
Sbjct: 489 MTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDR 548
Query: 195 A 195
A
Sbjct: 549 A 549
>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 36/199 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------------NH 98
+ IF+ + K G + + L+ L D A K F+ N
Sbjct: 177 LKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLING 236
Query: 99 LMVGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
L + V+EA + +K G++P+V+TY+++MDG CK GRS +AMEL + RG N
Sbjct: 237 LCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPN 296
Query: 158 VVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+VT ++LL R+ + G P + VI C V K +A L
Sbjct: 297 MVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLD 356
Query: 201 LMYEHGKIPSRTSHDMLIK 219
M G P+R + ++ +K
Sbjct: 357 EMILGGITPNRLTWNIHVK 375
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 94/206 (45%), Gaps = 27/206 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIK----KDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
+A R+V+++K ++ + ++S+ KDG + + +++MA T
Sbjct: 245 EAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLI 304
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ +++EA E+L + GLKPD Y ++ GFC V + EA L+E I G+T
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGIT 364
Query: 156 QN-------VVTLIQLLQRLEMGHIPRTITF----------------NNVIQALCGVGKI 192
N V T ++++ L + R T +++++ LC G+
Sbjct: 365 PNRLTWNIHVKTSNEVVRGLCTNYPSRAFTLYLSMRSRGISVEVETLDSLVKCLCKKGEF 424
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
KA+ L+ + G IP++ + +LI
Sbjct: 425 QKAVQLVDEIVTDGCIPNKGTWKLLI 450
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 37/207 (17%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------------ 102
+ + +F+ +K + S + +L LV N+ + A KF+ N +G
Sbjct: 104 DSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLI 163
Query: 103 --------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
V+ ++ + G PD YTY ++ G C+ GR +EA +L E +E+
Sbjct: 164 KALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDC 223
Query: 155 TQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALL 197
VVT L+ L EM G P T+++++ LC G+ +A+
Sbjct: 224 APTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAME 283
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L +M G P+ ++ LI L ++
Sbjct: 284 LFEMMMARGCRPNMVTYTTLITGLCKE 310
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA M ++N G+ P++YTY +MDG+CK+ +A+EL E + G+ NVVT
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFG 302
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G +P +N +I C G + +AL L + +H
Sbjct: 303 ILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKH 362
Query: 206 GKIPSRTSHDMLIKKL 221
+P ++ +LIK L
Sbjct: 363 EILPDVFTYSILIKGL 378
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K + +K+ ++++ + DG +V F L+ L +E +A KF
Sbjct: 275 KIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIF 334
Query: 96 ------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ G + EA + ++ + PDV+TY+ ++ G C V R EA LL E
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEM 394
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
++G N VT L+ Q E G P ITF+ +I C GK+
Sbjct: 395 KKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKM 454
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
A+ L M G +P ++ LI
Sbjct: 455 EAAMGLYTEMVIKGLLPDVVAYTALI 480
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A E+ + G++P++ T++ ++DG+CK G+ AM L E + +G+ +VV
Sbjct: 417 GNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAY 476
Query: 162 IQLLQ------------RL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
L+ RL E G P T + +I LC G+I A+ L
Sbjct: 477 TALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR + +++ ++ G P+V TY ++DG C+ G +A L +E IE+ + VV
Sbjct: 172 GRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIY 231
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ L G +P T+N ++ C + + KAL L M
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG 291
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ + +LI L
Sbjct: 292 DGLLPNVVTFGILIDGL 308
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ + V++A E+ + DGL P+V T+ ++DG CK A + L + GV
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331
Query: 157 NVVTL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLL 199
N+ + L +E I P T++ +I+ LCGV ++ +A LL
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391
Query: 200 FLMYEHGKIPSRTSHDMLI 218
M + G +P+ +++ LI
Sbjct: 392 QEMKKKGFLPNAVTYNTLI 410
Score = 42.7 bits (99), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
H G +EA+ + ++ GL P+V+T + ++DG CK GR ++A++L
Sbjct: 482 GHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G VEEA + + K D L P + ++DG K GR + ++ + + RG + NVVT
Sbjct: 139 MGLVEEA--LWVYYKMDVL-PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVT 195
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + +E P + + +I+ LCG +I +A + M
Sbjct: 196 YGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMR 255
Query: 204 EHGKIPSRTSHDMLI 218
G +P+ +++ ++
Sbjct: 256 NSGMLPNLYTYNTMM 270
>gi|224084127|ref|XP_002307219.1| predicted protein [Populus trichocarpa]
gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 34/204 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-------- 100
+A +++ I + + + + G N S+ FN +L LV + D A KF+ +M
Sbjct: 96 RARMIRDVIKVLDLVTRYGKNPSLKIFNSILDVLVK-EDIDLARKFYRKKMMGAGIQGDD 154
Query: 101 ------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
R+ E +++L +K+ GLKP+V Y ++ C G+ A L+NE
Sbjct: 155 YTYGILMKGLCLTNRIGEGFKLLQVIKSRGLKPNVVIYNTLLHALCNNGKVGRARSLMNE 214
Query: 149 AIE-RGVTQNVV------------TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
E VT NV+ L+ L + +G +P +T V++ LC VG++ +A
Sbjct: 215 IKEPNDVTFNVLICGYCKEDNFVQALVLLEKSFSLGFVPDVVTVTKVVEILCNVGRVTEA 274
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIK 219
+ +L + G + +H+ LIK
Sbjct: 275 VEILERVESKGGVVDVVAHNTLIK 298
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA + + N+G P Y ++ GFC+ G EA+EL+NE +
Sbjct: 444 GAIQEAKRVYDQMNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMV----------- 492
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+G+ P TFN +I C +GK AL LL M G +P S+ LI L
Sbjct: 493 -------FLGYFPVASTFNALISGFCRLGKDGSALKLLEDMVGRGCVPDTGSYSPLIDAL 545
Query: 222 DQQ 224
++
Sbjct: 546 CRK 548
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA E++ + G P T+ A++ GFC++G+ A++LL + + RG
Sbjct: 479 GCVREALELMNEMVFLGYFPVASTFNALISGFCRLGKDGSALKLLEDMVGRGC------- 531
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P T +++ +I ALC KA LL M E+G P + L L
Sbjct: 532 -----------VPDTGSYSPLIDALCRKKSFQKAASLLLQMVENGITPDYLIWNSLFHCL 580
Query: 222 DQQ 224
QQ
Sbjct: 581 SQQ 583
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRV EA E+L V++ G DV + ++ GFCK G+ LL E +ER
Sbjct: 268 VGRVTEAVEILERVESKGGVVDVVAHNTLIKGFCKFGKVKLGHGLLKE-MER-------- 318
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
G +P T+N +I C G + AL + M G + + D LIK
Sbjct: 319 ---------KGCLPNADTYNALISGFCESGMLESALDMFNDMKTDGINCNFVTFDTLIKG 369
Query: 221 L 221
L
Sbjct: 370 L 370
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
L DT S G +E A +M ++K DG+ + T+ ++ G GR+ + +
Sbjct: 322 LPNADTYNALISGFCESGMLESALDMFNDMKTDGINCNFVTFDTLIKGLFSRGRTEDGFK 381
Query: 145 LLNEAIE--RGVTQNVVT-----------------LIQLLQRLEMGHIPRTITFNNVIQA 185
+L E +E RGV ++ ++ L ++E PR + + I
Sbjct: 382 IL-ELMEETRGVCGGSISPYNSVLYGLYRKNMLNEALEFLMKME-NLFPRAVDRSLRILG 439
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
C G I +A + M G IPS +D LI Q+
Sbjct: 440 FCEEGAIQEAKRVYDQMNNEGGIPSALVYDCLIHGFCQE 478
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
++E +++ N + G S FN L+ L + +A+K + MVGR
Sbjct: 481 VREALELMNEMVFLGYFPVASTFNALISGFCRLGKDGSALKLLED--MVGR--------- 529
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G PD +Y+ ++D C+ +A LL + +E G+T
Sbjct: 530 -----GCVPDTGSYSPLIDALCRKKSFQKAASLLLQMVENGIT 567
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 37/223 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P S +D + KA L E +F + G S +N ++ + + D A++
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALEL 242
Query: 95 FSN-------------------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
F + H G+++EA+ +L + +DG PDV TY+ ++ G C
Sbjct: 243 FKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCS 302
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTIT 178
+ R ++A LL + ++R VVT L+ L G P +T
Sbjct: 303 IARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT 362
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N ++ C G+ +A LL M G P+ ++ L+ L
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGL 405
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
+P S +D + KA L + ++F + G S + L+ L M N D A +
Sbjct: 7 SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 66
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F++ MN + G P TY ++D CK G EA +L+ + IE G
Sbjct: 67 LFAD--------------MNRR--GCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDG 110
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
H+P +T+N V+ LC ++ +ALLL M G P+R S
Sbjct: 111 ------------------HVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRS 152
Query: 214 HDMLIKKLDQQ 224
H+ +I L QQ
Sbjct: 153 HNTIILGLCQQ 163
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++EA E+L + + G PDV TY ++ G C+ G++ A ELL++ + RG+ NVVT
Sbjct: 338 AGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT 397
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L G P T+ +I C G++ L L M
Sbjct: 398 YTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV 457
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P + L +L
Sbjct: 458 CAGISPDHVVYGTLAAEL 475
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 113/258 (43%), Gaps = 45/258 (17%)
Query: 8 SPTPFSVLLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDI 59
SP ++V+ +D+ + E+ DL + P + +D + K+S ++E + +
Sbjct: 79 SPVTYNVM-IDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLL 137
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------SNHLMV----- 101
FN +++ G + N +++ L ++ D A + F S +++
Sbjct: 138 FNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAK 197
Query: 102 -GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G++ EAY++ + + G+ P TY ++ G C +EA+EL +G + T
Sbjct: 198 AGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFT 257
Query: 161 L----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+LL+R+ + GH+P +T++ +I LC + ++ A LL M
Sbjct: 258 FNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMV 317
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ P+ + + LI L
Sbjct: 318 KRQCKPTVVTQNTLIHGL 335
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA+ L E +F +K G ++ + L++ + D +K F
Sbjct: 406 CKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFG----------- 454
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
EM+ G+ PD Y + CK GRS A+E+L E E
Sbjct: 455 -EMVCA----GISPDHVVYGTLAAELCKSGRSARALEILREGRE 493
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 17/146 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H + GR+EEA +L ++ GL PDV +Y+ I+ GFC+ + A ++ E +E+GV+
Sbjct: 421 NGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVS 480
Query: 156 QNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLL 198
+ +T L+Q L EM +P T+ ++I C G +++AL L
Sbjct: 481 PDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNL 540
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQQ 224
M + G +P ++++LI L++Q
Sbjct: 541 HDEMIKKGFLPDTVTYNVLINGLNKQ 566
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 37/182 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------------HL 99
++ + G + +V +N L+ + ++FF +
Sbjct: 190 VYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYC 249
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+ R++EA+++L ++ +GL+P++ TY +++G C+VGR E +L E +G
Sbjct: 250 KLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFA---- 305
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P +T+N ++ C VG H+AL+L M +G P ++ LI
Sbjct: 306 --------------PDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLIN 351
Query: 220 KL 221
+
Sbjct: 352 TM 353
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA ++ + N L PD +TYT++++G+CK G NEA+ L +E I++G
Sbjct: 498 RLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGF-------- 549
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+P T+T+N +I L + +A LL ++ IP+ ++D LI+
Sbjct: 550 ----------LPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIE 596
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ + VG +A + + +GL PDV TYT++++ CK G N AME ++ RG+
Sbjct: 316 NGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLR 375
Query: 156 QNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
N VT L+ + + G P +T+N ++ C G++ +A+ L
Sbjct: 376 PNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGL 435
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
L M G P S+ +I
Sbjct: 436 LRGMEGKGLSPDVVSYSTII 455
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EAY + + G P + TY A+++G C GR EA+ LL +G++ +VV+
Sbjct: 392 GFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSY 451
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ + +E G P IT++++IQ LC ++++A L M
Sbjct: 452 STIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLN 511
Query: 205 HGKIPSRTSHDMLI 218
+P ++ LI
Sbjct: 512 KSLLPDEFTYTSLI 525
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 18/136 (13%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN-EAMELLNEAIERGVTQNVVTLI 162
+E+A ++ K +G P V +Y AI+D + + A ++ E I GV+ NV +
Sbjct: 148 IEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYN 207
Query: 163 QLLQ------RLEMG-----------HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L++ LEMG +P +T+N VI A C + +I +A LL M
Sbjct: 208 ILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLE 267
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ +++M+I L
Sbjct: 268 GLEPNLLTYNMVINGL 283
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 32/170 (18%)
Query: 84 MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
+L ++ T + + G + EA + + G PD TY +++G K R+ EA
Sbjct: 514 LLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAK 573
Query: 144 ELL-----NEAIERGVT-------------QNVVTLI-------------QLLQRL-EMG 171
LL +E+I G+T ++VV LI Q+ + + +
Sbjct: 574 RLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRN 633
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +N +I C G +HKA L M + G IP + L+K L
Sbjct: 634 QKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKAL 683
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+ I K G SV FN L+ + ++ +G ++E + + + G
Sbjct: 158 VFDEITKWGLRPSVVSFNTLM----------------NGYIRLGDLDEGFRLKSAMHGSG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + N+A EL +E I G+ N VT L+
Sbjct: 202 IQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L G P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 EAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A + I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +P
Sbjct: 410 DGHVPC 415
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+ A +ML + + GLKPD TYT I++ FCK G +LL E G VVT
Sbjct: 360 GQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
R++EA+E+ ++ DGL PDVYT+ A+MDG CK GR ++A LL + G T +V
Sbjct: 314 RLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYN 373
Query: 160 TLIQLLQR-----------LEM---GHIPRTITFNNVIQALCGVGKIHKALLLL 199
TLI L++ LEM G+ P +T+N +I C G+I AL L
Sbjct: 374 TLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLF 427
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 89/234 (38%), Gaps = 45/234 (19%)
Query: 15 LLVDSPSRSPSAAESL----DLKEN---PRSLQAQRFVDKI-KASPLKERIDIFNSIKKD 66
+L+D+ + ++L D+K P +D + K+ + + +F + +
Sbjct: 164 ILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSE 223
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------------MVGRVEEA 107
G + +N L+ L D A K F L + GR EA
Sbjct: 224 GLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEA 283
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ ++ G DV Y ++D CK R +EA E+ E E G+
Sbjct: 284 RRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGL------------- 330
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P TFN ++ LC G+IH A +LL M G P T ++ LI L
Sbjct: 331 -----VPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGL 379
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 38/170 (22%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLM----------ALVMLNEQDTA-----VK 93
K+ L E +IF +++DG V FN L+ A ++L + A V
Sbjct: 311 KSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVT 370
Query: 94 FFSNHL----MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++ + GRVEEA ++L+ +++ G +PDV TY ++D CK GR +A+ L E
Sbjct: 371 VYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEI 430
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+G T+T+N ++ LC G++ +A L
Sbjct: 431 SAKG-------------------FANTVTYNTILNGLCMAGRVDEAYKLF 461
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 36/184 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------- 98
+KA ++ + ++ + + G FN L+ A D+ K F
Sbjct: 100 VKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNV 159
Query: 99 ----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G VE+A ++ +++K+ G +P+++TYT+++DG K G ++A L E
Sbjct: 160 ITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEE 219
Query: 149 AIERGVTQNVV---TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGK 191
G+ V +LI L R L G P +TF +++ L G+
Sbjct: 220 MTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGR 279
Query: 192 IHKA 195
+A
Sbjct: 280 ASEA 283
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++A + + GL+PD YT+ +M+ F K R + +L E + + NV
Sbjct: 103 GYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNV--- 159
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IT++ +I A+C G + KAL + M G P+ ++ +I L
Sbjct: 160 ---------------ITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGL 204
Query: 222 DQ 223
+
Sbjct: 205 GK 206
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV---GRSNEAMELLNEAI 150
G+ ++A + G+KP V TY ++DG CK GR EA+ L + I
Sbjct: 404 LICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMI 463
Query: 151 ERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIH 193
E+G +VVT L+ L G IP T+N++I LCG+ K+
Sbjct: 464 EKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVD 523
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+AL L M E G +P ++ +I L +Q
Sbjct: 524 EALELFVAMVEKGCVPDTITYGTIISALCKQ 554
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ E + +F S+ + G V +N L+ L+ ++D RV EA+E+
Sbjct: 274 VSEALKLFGSVLRQGYEPEVPTYNILIDGLL---KED-------------RVNEAFELFS 317
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-------LIQ-- 163
+ GL+PD TYT +DG CK GR +A+ +L + E+G +VV+ L +
Sbjct: 318 GLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEK 377
Query: 164 -------LLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
LL +E G P I+FN +I C GK KA+ M + G P+ +++
Sbjct: 378 RVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYN 437
Query: 216 MLIKKL 221
+L+ L
Sbjct: 438 ILVDGL 443
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 36/193 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+AS + + +F+ ++K G + +N LL L N GR+ +A
Sbjct: 62 RASRIGDAQTVFDGMRKHGFWPNRITYNALLSGL-------------CNG---GRMSDAQ 105
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LI--- 162
+ + G PDV TY ++ GFCKVG+ +EA+++ + A++RG +VVT LI
Sbjct: 106 ALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGF 165
Query: 163 ----------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
++LQR+ +P +T+N+++ LC G++ +A +L+ + G P+
Sbjct: 166 CKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIV---DKGFSPNV 222
Query: 212 TSHDMLIKKLDQQ 224
++ LI L ++
Sbjct: 223 ITYSTLISGLCRE 235
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+++EA ++ G PDV TY A+++GFCK + +EA +L + + +VVT
Sbjct: 133 VGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVT 192
Query: 161 LIQLLQRL--------------EMGHIPRTITFNNVIQALC-GVGKIHKALLLLFLMYEH 205
L+ L + G P IT++ +I LC + ++ A LL M +
Sbjct: 193 YNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLN 252
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P S++ LI L ++
Sbjct: 253 GCKPDIVSYNALIHGLARE 271
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+E A ++L + +G KPD+ +Y A++ G + +EA++L + +G V T
Sbjct: 238 RLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYN 297
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L + G P IT+ I LC G++ ALL+L M E
Sbjct: 298 ILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEK 357
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G +P SH+ +I L ++
Sbjct: 358 GCVPDVVSHNAVINGLCKE 376
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ S R+ +A + ++ G P+ TY A++ G C GR ++A L I+ G
Sbjct: 56 YISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAG 115
Query: 154 VTQNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ +VVT LL ++ G +P +T+N +I C K+ +A
Sbjct: 116 YSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQ 175
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
+L M +P +++ L+ L
Sbjct: 176 RILQRMVSESLVPDVVTYNSLVNGL 200
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 40/211 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
KA L++ +DIF + T + +N L+ + D A++
Sbjct: 266 CKAGRLRDAVDIFEEMSCAPTAIT---YNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDV 322
Query: 96 -------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
S +GR+++AYE+ + + L PDV T+T+++DG C GR +A+ELL E
Sbjct: 323 ITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEE 382
Query: 149 AIERGVTQNVVTL----------IQLLQRLEM-------GHIPRTITFNNVIQALCGVGK 191
RG + T Q+ + E+ G +P T+T+N ++ C G+
Sbjct: 383 ITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGR 442
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
+AL L + G P TS M LD
Sbjct: 443 TDQALQYLDQLNSEGG-PCPTSVAMYAIILD 472
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 22/120 (18%)
Query: 103 RVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
R++EA +L+ V G PD+ TY+ ++DG CK GR +A+++
Sbjct: 234 RLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFE-------------- 279
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
EM P IT+N++I C G + +A+ LL M + P ++ L+
Sbjct: 280 -------EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAF 332
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 102 GRVEEAYEMLMNVKNDG--LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GR ++A + L + ++G V Y I+D C+ GR+++A++ E I+R
Sbjct: 441 GRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQR------- 493
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G++P TF V+ ALC + +A LL M ++G P + D ++
Sbjct: 494 -----------GYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVV 541
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ +A ++L + + PD T T ++ C R ++A EL+ E + RG+ N +T
Sbjct: 163 GRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITY 222
Query: 162 IQLL------QRLE------------MGHIPRTITFNNVIQALCGVGKIHKAL 196
L+ +RL+ G P +T++ VI LC G++ A+
Sbjct: 223 SALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAV 275
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 34/197 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV-------------- 104
+ + I+ G + + N +L L + TA+ F +G V
Sbjct: 33 LLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYNLIHPLCK 92
Query: 105 ----EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL---LNEA-------- 149
+EA +L+++K+ G+ P + ++ G C+ GR A+ + +N+A
Sbjct: 93 ARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTY 152
Query: 150 --IERGVTQ--NVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ G+++ + +Q+LQ + H+P T V+Q+LC ++ A L+ M
Sbjct: 153 TKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLH 212
Query: 205 HGKIPSRTSHDMLIKKL 221
G + ++ L+ L
Sbjct: 213 RGMAANAITYSALVDGL 229
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 19/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ A + + ND PD TYT ++ G K GR +A+++L E + + TL
Sbjct: 129 GRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTL 187
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKAL-LLLFLMY 203
++Q L +G IT++ ++ LC ++ +A+ LLL +
Sbjct: 188 TVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVT 247
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P ++ +I L
Sbjct: 248 RRGFTPDIVTYSTVIDGL 265
>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Vitis vinifera]
Length = 539
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K L E +++F+ + G + + +N L+ AL L E
Sbjct: 173 KDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVV 232
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
S +++V G+V EA++++ + G++PDV TY A+MDG C +EA+++ +
Sbjct: 233 SLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMM 292
Query: 150 IERGVTQNVVTLIQL------LQRL--------EMGH---IPRTITFNNVIQALCGVGKI 192
+ G NVV+ L +QR+ EM IP T+T++ +I LC VG++
Sbjct: 293 VRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRL 352
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A+ L M G+IP+ ++ +L+ L
Sbjct: 353 QDAIALFNEMVACGQIPNLVTYSILLDYL 381
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+VG++ EA ++ + +G +P+V TY +M+G CK + EA+ L +E I +G++ ++
Sbjct: 138 VVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIF 197
Query: 160 TLIQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L+ L E H+ P ++ N V+ ALC GK+ +A ++ +M
Sbjct: 198 TYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMM 257
Query: 203 YEHGKIPSRTSHDMLI 218
+ G P ++ L+
Sbjct: 258 IQGGVEPDVVTYAALM 273
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
S + E + +F+ + ++G +V +N L+ + + + R+++A +
Sbjct: 280 SEMDEAVKVFDMMVRNGCVCNVVSYNTLI----------------NGYCKIQRIDKAMYL 323
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM 170
+ L P+ TY+ ++ G C VGR +A+ L NE + G N+VT LL L
Sbjct: 324 FEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCK 383
Query: 171 GHI-----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
H P +N I +C G + A L + G P +
Sbjct: 384 NHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWT 443
Query: 214 HDMLIKKLDQQ 224
H+++I+ L ++
Sbjct: 444 HNIMIRGLCKR 454
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 18/104 (17%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G+ PDVYT T +++ FC + R + A+ +L + L++GH P T
Sbjct: 86 GIPPDVYTLTIVINSFCHLNRVDFALSVLAKI------------------LKLGHQPDTA 127
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TF +++ LC VGKI +AL + M G P+ ++ L+ L
Sbjct: 128 TFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGL 171
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV+ A +L + G +PD T+T ++ G C VG+ EA+++ ++ + G NVVT
Sbjct: 106 RVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYG 165
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L EM G P T+N++I ALC + + LL M +
Sbjct: 166 TLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKS 225
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
+P+ S ++++ L ++
Sbjct: 226 KIMPNVVSLNIVVDALCKE 244
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A ++ N+ GL+PDV+T+ ++ G CK G +EA +L E E G +N
Sbjct: 420 GDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRN---- 475
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+N + Q L K +A+ LL M G ++ +L+K L
Sbjct: 476 --------------GCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKML 521
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA +L ++ L PDV Y +DG C+ G A +L + RG+
Sbjct: 386 RLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQ------- 438
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
P T N +I+ LC G + +A L M E+G + + +++ + + L
Sbjct: 439 -----------PDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLL 487
Query: 223 Q 223
Q
Sbjct: 488 Q 488
>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 36/207 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDL---------------LMALVMLNEQDTAVKFFSN 97
LK+ +D+FN + + N V F L ++A++M+ V +++
Sbjct: 158 LKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNS 217
Query: 98 ----HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ +V +V +A + + G+ PD+ +Y+ +++GFCK+ +EAMELL E +
Sbjct: 218 LMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQ 277
Query: 154 VTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
+ NVVT L+ L EM G P +T+++++ ALC ++ A+
Sbjct: 278 IIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAI 337
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
LL M G P+ ++ +LIK L Q
Sbjct: 338 ALLTQMKNQGIQPNMYTYTILIKGLCQ 364
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 52/181 (28%)
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
K H +VG++++A ++ + + + PDVYT+T ++DGFCK GR EA +L + +
Sbjct: 147 KIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQ 206
Query: 153 GVTQNVVTLIQLLQRL-------------------------------------------- 168
G+ VVT L+
Sbjct: 207 GIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEA 266
Query: 169 -----EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
EM H IP +T++++I LC GKI AL L+ M++ G+ P+ ++ ++
Sbjct: 267 MELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDA 326
Query: 221 L 221
L
Sbjct: 327 L 327
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+ A +L +KN G++P++YTYT ++ G C+ G+ +A ++ + + +G NV
Sbjct: 332 QVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVY--- 388
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ +IQ C G +AL LL M ++G IP+ +++++I L
Sbjct: 389 ---------------TYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSL 432
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G++E+A ++ ++ G +VYTYT ++ GFC G +EA+ LL++ + G N T
Sbjct: 366 GKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKT 424
>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 418
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV FN L+ S ++ +G ++E + + + G
Sbjct: 158 VFDAITKWGLRPSVVSFNTLM----------------SGYIRLGDLDEGFRLKSAMHASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + +EA EL NE ++ G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L G P IT+N +I LC G + +A L+ M P + ++ LI
Sbjct: 262 EIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLI 318
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKPD TYT I++ FCK G +LL E G VVT
Sbjct: 360 GRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGHVPCVVT 418
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + LKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXR 409
Query: 205 HGKIPS 210
G +P
Sbjct: 410 DGHVPC 415
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 36/188 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV----MLNEQDTAVKFFS------- 96
K + + E D+FNS+ +G V +N L+ V L +D ++
Sbjct: 312 CKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPST 371
Query: 97 ---NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
N ++ G R+EEA +M+ ++ ++G PDV T++ ++ G+CK GR ++ +EL +E
Sbjct: 372 VTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSE 431
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+RG+ + +T L+ EM G P TITF +++ LC +
Sbjct: 432 MCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAE 491
Query: 192 IHKALLLL 199
+ K L +L
Sbjct: 492 LQKGLTML 499
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A ++ + +G +PD TY I++G CK+G + A+ +L + E + NVV
Sbjct: 24 GRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIY 83
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ RL E G P +T+N +I C GK A LL M E
Sbjct: 84 SAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIE 143
Query: 205 HGKIPSRTSHDMLI 218
P + LI
Sbjct: 144 RNIDPDVVTFSALI 157
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A + + G+ P+V TY ++DG+C G+ ++A +LL + IER + +VVT L+
Sbjct: 98 KAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALI 157
Query: 166 -----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L P TIT++++I C ++ A + LM G
Sbjct: 158 NAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCS 217
Query: 209 PSRTSHDMLI 218
P + + LI
Sbjct: 218 PDIITLNTLI 227
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G++E+A EM + + D T I++G CK + +EA +L N GV +VVT
Sbjct: 280 GKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTY 339
Query: 161 --LIQLLQR-----------LEM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI + + LEM G IP T+T+N+++ C ++ +A ++ M
Sbjct: 340 NILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVS 399
Query: 205 HGKIPSRTSHDMLIK 219
G P + LIK
Sbjct: 400 EGCSPDVVTFSTLIK 414
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 33/130 (25%)
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG-----------FCKVGRSNEAM 143
F H R+E+A M + + G PD+ T ++DG FC+VG N A
Sbjct: 195 FCKH---SRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQ 251
Query: 144 ELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+L E I GV+ P +T N ++ LC GK+ KA L +F ++
Sbjct: 252 DLFQEMISNGVS------------------PDIVTCNTLLAGLCENGKLEKA-LEMFKVF 292
Query: 204 EHGKIPSRTS 213
+ K+ T+
Sbjct: 293 QKSKMDLDTA 302
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G +V T+T +M+G C+ GR +A+ L++ +E GH P +
Sbjct: 5 GCPANVVTFTTLMNGLCREGRVLQALALVDRMVEE------------------GHQPDAV 46
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYE 204
T+ ++ +C +G AL +L M E
Sbjct: 47 TYGTIVNGMCKLGDTVSALNMLRKMDE 73
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 40/211 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
KA L++ +DIF + T + +N L+ + D A++
Sbjct: 225 CKAGRLRDAVDIFEEMSCAPTAIT---YNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDV 281
Query: 96 -------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
S +GR+++AYE+ + + L PDV T+T+++DG C GR +A+ELL E
Sbjct: 282 VTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEE 341
Query: 149 AIERGVTQNVVTL----------IQLLQRLEM-------GHIPRTITFNNVIQALCGVGK 191
RG + T Q+ + E+ G +P T+T+N ++ C G+
Sbjct: 342 ITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGR 401
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
+AL L + G P TS M LD
Sbjct: 402 TDQALQYLDQLNSEGG-PCPTSVAMYAIILD 431
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K L E + + ++ + G +V +N ++ RV+EA
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRAR----------------RVDEA 163
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ + + +G PD+ TYTA++ GFCK +ELL E RG T ++VT ++
Sbjct: 164 HGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDG 223
Query: 168 L--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
L EM P IT+N++I C G + +A+ LL M + P +
Sbjct: 224 LCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVT 283
Query: 214 HDMLIKKL 221
+ L+
Sbjct: 284 YTTLMSAF 291
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 89 DTAVKFFSNHLMVG-RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+T + L +G RV++A E++ + + G+ + TY+A++DG CK R +EA+ L+
Sbjct: 74 NTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVE 133
Query: 148 EAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVG 190
ERG VVT ++ Q + G P IT+ +I C
Sbjct: 134 TMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSR 193
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + L LL + G P ++ +I L
Sbjct: 194 DVGRGLELLGEVTRRGFTPDIVTYSTVIDGL 224
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 102 GRVEEAYEMLMNVKNDG--LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GR ++A + L + ++G V Y I+D C+ GR+++A++ E I+R
Sbjct: 400 GRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQR------- 452
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G++P TF V+ ALC + +A LL M ++G P + D ++
Sbjct: 453 -----------GYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVV 500
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ +A ++L + + PD T T ++ C R ++A EL+ E + RG+ N +T
Sbjct: 54 RLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYS 113
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L E G P +T+N++I C ++ +A + M
Sbjct: 114 ALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAE 173
Query: 206 GKIPSRTSHDMLI 218
G P ++ LI
Sbjct: 174 GCHPDIITYTALI 186
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 18/134 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ A + + ND PD TYT ++ G K R +A+++L E + + TL
Sbjct: 19 GRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTL 77
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++Q L +G IT++ ++ LC ++ +A+ L+ M E
Sbjct: 78 TVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAE 137
Query: 205 HGKIPSRTSHDMLI 218
G P+ +++ +I
Sbjct: 138 RGCAPTVVTYNSII 151
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 36/212 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K +K+ ++IF ++ + G +V + L+ AL + K F
Sbjct: 339 KEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLV 398
Query: 96 ------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++H G ++ A+E++ ++ + PD TY +M G C +GR +EA +L++E
Sbjct: 399 LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 458
Query: 150 IERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKI 192
+RG+ ++VT L+ M G P +T+N +IQ LC G+
Sbjct: 459 TKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQG 518
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A ++ M E+G P +++ LI+ L +
Sbjct: 519 DDAENMVKEMVENGITPDDSTYISLIEGLTTE 550
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 102 GRVEEAYEMLMNVK-NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV+ A +++ ++ G+ P+ YTY ++ G+CKVGR +EA+++ +E + +G +
Sbjct: 199 GRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK---- 254
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P + +N +I C GK+ ALL M E G + ++++L+
Sbjct: 255 -------------PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHA 301
Query: 221 L 221
L
Sbjct: 302 L 302
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 89/188 (47%), Gaps = 36/188 (19%)
Query: 67 GTNWSVSDFNDLLMALVM-------------LNEQDTAVKFFSNHLMV------GRVEEA 107
G +V+ +N L+ AL M + + A+ F+ ++++ G V++A
Sbjct: 287 GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKA 346
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------------- 154
E+ N+ G++ V TYT+++ K G+ E +L +EA+ RG+
Sbjct: 347 LEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINS 406
Query: 155 ---TQNVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ N+ +++ +E I P +T+N +++ LC +G++ +A L+ M + G P
Sbjct: 407 HSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPD 466
Query: 211 RTSHDMLI 218
+++ LI
Sbjct: 467 LVTYNTLI 474
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
M GR EAYE++ + GL DV+TY +++G CK G +A+E+ RGV V
Sbjct: 303 FMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 362
Query: 159 VTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
VT L+ L G P + +N +I + G I +A ++
Sbjct: 363 VTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 422
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M + P +++ L++ L
Sbjct: 423 MEKKRIAPDDVTYNTLMRGL 442
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 18/155 (11%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELL 146
Q T S VGRV+EA ++ + G +KP+ Y A++ G+C G+ + A+
Sbjct: 221 QYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYR 280
Query: 147 NEAIERGVTQNVVTLIQLLQRL--------------EMGHIPRTI---TFNNVIQALCGV 189
+ +ERGV V T L+ L EMG + T+N +I C
Sbjct: 281 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKE 340
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G + KAL + M G + ++ LI L ++
Sbjct: 341 GNVKKALEIFENMSRRGVRATVVTYTSLIYALSKK 375
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA++++ + G++P+V TY A+MDG C +EA+++ + + G NV++
Sbjct: 291 GKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISY 350
Query: 162 IQL------LQRL--------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L +QR+ EM IP T+T+N ++ LC VG++ A+ L M
Sbjct: 351 NTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVA 410
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
HG+IP ++ +L+ L ++
Sbjct: 411 HGQIPDLATYRILLDYLCKK 430
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 39/245 (15%)
Query: 16 LVDSPSRSPSAAESLDLKENP--RSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSV 72
++ PS SP + L P SL RF K + + L + + FN + S
Sbjct: 8 MLTRPSSSPPGFGTCVLSLPPYFSSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPST 67
Query: 73 SDFNDLLMALVMLNEQDTAVKF-------------------FSNHLMVGRVEEAYEMLMN 113
DFN LL ++ + T ++ + R A+ +L
Sbjct: 68 VDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAK 127
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------------ 161
+ GL+PD T+T ++ G C G+ +A+ L ++ I G NVVT
Sbjct: 128 ILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGN 187
Query: 162 ----IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
I+LL+ +E G+ P + + ++I +LC ++ +A L M G P ++
Sbjct: 188 TNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTS 247
Query: 217 LIKKL 221
LI L
Sbjct: 248 LIHSL 252
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG A +L +++ +PDV YT+I+D CK + EA L ++ + +G++ ++ T
Sbjct: 185 VGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFT 244
Query: 161 LIQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E H+ P + F+ V+ ALC GKI +A ++ +M
Sbjct: 245 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMI 304
Query: 204 EHGKIPSRTSHDMLI 218
G P+ +++ L+
Sbjct: 305 IRGVEPNVVTYNALM 319
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A ++ N+ + GL+P+V TYT +++G C+ G +EA +L E G +
Sbjct: 466 GELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCS------ 519
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK-- 219
P T+N + Q L + +A+ LL M G ++ +L++
Sbjct: 520 ------------PDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEML 567
Query: 220 ---KLDQ 223
KLDQ
Sbjct: 568 CDDKLDQ 574
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 36/209 (17%)
Query: 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------------- 96
S + E + +F+++ +G +V +N L+ + D A F
Sbjct: 326 SEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTY 385
Query: 97 NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL----N 147
N LM VGR+++A + + G PD+ TY ++D CK +EAM LL
Sbjct: 386 NTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEG 445
Query: 148 EAIERGVTQNVVTLIQLLQRLEM-------------GHIPRTITFNNVIQALCGVGKIHK 194
++ + + + + + E+ G P T+ +I LC G + +
Sbjct: 446 SNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDE 505
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A L M +G P +++ + + L Q
Sbjct: 506 ANKLFMEMDGNGCSPDGCTYNTITQGLLQ 534
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L+ DIF+++ G +V + ++ L G ++EA
Sbjct: 464 RAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRR----------------GLLDEAN 507
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ M + +G PD TY I G + + A++LL E + RG + +V T L++ L
Sbjct: 508 KLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEML 567
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA M ++N G+ P++YTY +MDG+CK+ +A+EL E + G+ NVVT
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFG 302
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G +P +N +I C G + +AL L + +H
Sbjct: 303 ILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKH 362
Query: 206 GKIPSRTSHDMLIKKL 221
+P ++ +LIK L
Sbjct: 363 EILPDVFTYSILIKGL 378
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K + +K+ ++++ + DG +V F L+ L +E +A KF
Sbjct: 275 KIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIF 334
Query: 96 ------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ G + EA + ++ + PDV+TY+ ++ G C V R EA LL E
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEM 394
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
++G N VT L+ Q E G P ITF+ +I C GK+
Sbjct: 395 KKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKM 454
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
A+ L M G +P ++ LI
Sbjct: 455 EAAMGLYTEMVIKGLLPDVVAYTALI 480
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A E+ + G++P++ T++ ++DG+CK G+ AM L E + +G+ +VV
Sbjct: 417 GNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAY 476
Query: 162 IQLLQ------------RL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
L+ RL E G P T + +I LC G+I A+ L
Sbjct: 477 TALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR + +++ ++ G P+V TY ++DG C+ G +A L +E IE+ + VV
Sbjct: 172 GRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIY 231
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ L G +P T+N ++ C + + KAL L M
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG 291
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ + +LI L
Sbjct: 292 DGLLPNVVTFGILIDGL 308
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ + V++A E+ + DGL P+V T+ ++DG CK A + L + GV
Sbjct: 272 GYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331
Query: 157 NVVTL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLL 199
N+ + L +E I P T++ +I+ LCGV ++ +A LL
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391
Query: 200 FLMYEHGKIPSRTSHDMLI 218
M + G +P+ +++ LI
Sbjct: 392 QEMKKKGFLPNAVTYNTLI 410
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 78/180 (43%), Gaps = 25/180 (13%)
Query: 36 PRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D K +++ I++ + + + G ++ F+ L+ + + A+
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460
Query: 95 FS-------------------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
++ H G +EA+ + ++ GL P+V+T + ++DG CK
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCK 520
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
GR ++A++L + + T + L R P + + +IQ LC G+I KA
Sbjct: 521 DGRISDAIKLF---LAKTGTDTTGSKTNELDRSLCS--PNHVMYTALIQGLCTDGRIFKA 575
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G VEEA + + K D L P + ++DG K GR + ++ + + RG + NVVT
Sbjct: 139 MGLVEEA--LWVYYKMDVL-PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVT 195
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + +E P + + +I+ LCG +I +A + M
Sbjct: 196 YGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMR 255
Query: 204 EHGKIPSRTSHDMLI 218
G +P+ +++ ++
Sbjct: 256 NSGMLPNLYTYNTMM 270
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G EA +M + G+ PDV Y+++MDG C+ GR EA+E E RG++ +V T
Sbjct: 1099 GMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTY 1158
Query: 161 --LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R ++ G P TF +I LC GK+ +A +L LM
Sbjct: 1159 NSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRH 1218
Query: 205 HGKIPSRTSHDMLIKKL 221
GK P +++ L+ L
Sbjct: 1219 KGKEPDILTYNTLMNGL 1235
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 40/207 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV----------- 101
LKE ++ F ++ G + V +N L+ L F +LMV
Sbjct: 1136 LKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFL--NLMVDRGFSPDAFTF 1193
Query: 102 ----------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
G+V EA ++L +++ G +PD+ TY +M+G C VG+ +A +L +
Sbjct: 1194 TILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLAD 1253
Query: 152 RGVTQNVVTLIQLL------QRLE-----------MGHIPRTITFNNVIQALCGVGKIHK 194
RG+ NV + L+ Q+++ G P T+T+N +I ALC G++
Sbjct: 1254 RGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRT 1313
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A L M G+ +++ +L+ L
Sbjct: 1314 AQKLFVEMQTCGQFLKLSTYCVLLDGL 1340
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 34/170 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L+E +D+F SIKK ++ F+ LL + G++EEA+
Sbjct: 1342 KNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCR----------------AGKLEEAW 1385
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ + +GL+PD Y +++G C G +EA++LL + E+G
Sbjct: 1386 KQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGC-------------- 1431
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P +ITFN +IQ L +IH+A+ LL M P ML+
Sbjct: 1432 ----LPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L++ +F S+ G +V +N L+ + D A +FF N
Sbjct: 1241 LEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNT 1300
Query: 99 LM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L+ GRV A ++ + ++ G + TY ++DG CK G EAM+L +
Sbjct: 1301 LIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTE 1360
Query: 154 VTQNVVTLIQLLQ------RLEM-----------GHIPRTITFNNVIQALCGVGKIHKAL 196
N+ LL +LE G P TI +N +I LC G + +A+
Sbjct: 1361 HKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAV 1420
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
LL+ M E G +P + +++I+ L
Sbjct: 1421 KLLWQMEEKGCLPDSITFNVIIQNL 1445
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 32/194 (16%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN------HLMVG--------- 102
D+F+ + G V + L+ L D AV+ F H+
Sbjct: 31 DLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAE 90
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R EE ML +K G +P Y A++D C+ ++ EA E+L E E+G+ VVT
Sbjct: 91 RGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCT 150
Query: 163 QL-------------LQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ L+ LE+ G P T+N ++Q C GK+HKA+ LL M
Sbjct: 151 AVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRAC 210
Query: 206 GKIPSRTSHDMLIK 219
G P ++++LI+
Sbjct: 211 GVNPDAVTYNLLIR 224
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A+ +L ++ DGL D YTY A+++ CK GR+++A L + RG+ N VT
Sbjct: 230 GHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTF 289
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L G P T T+++ I+ LC + + L + M +
Sbjct: 290 NSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQ 349
Query: 205 HGKIPSRTSHDMLIKKL 221
PS ++ ++I KL
Sbjct: 350 KDVKPSTVNYTIVIHKL 366
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 18/132 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + GR+ +A +L +K G KP+V+TY A++ GFC G+ ++AM LLN+
Sbjct: 148 TCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKM 207
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
GV P +T+N +I+ C G I A LL LM G I
Sbjct: 208 RACGVN------------------PDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIA 249
Query: 210 SRTSHDMLIKKL 221
+ +++ LI L
Sbjct: 250 DQYTYNALINAL 261
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+S++ G + FN L+ L + D A KF L + + G
Sbjct: 273 LFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKF----------------LEKMVSAG 316
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV---TQNVVTLI-QLLQRLEMGHIP 174
PD YTY++ ++ CK+ S E + + E +++ V T N +I +LL+ G +
Sbjct: 317 CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVA 376
Query: 175 RT-------------ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
RT +T+ ++A C G++++A +L M ++G +++ L+
Sbjct: 377 RTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 433
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI--- 173
G +PD YT+ +++ G+C+ + + A +L ++ RG Q+VV+ L++ L E G I
Sbjct: 5 GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEA 64
Query: 174 ---------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P + +++ LC + + LL+L M E G PS ++ ++
Sbjct: 65 VELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVV 118
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE--- 148
N L+VG +V+ A ++ + G DV +Y +++G C+ GR +EA+EL E
Sbjct: 14 NSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQ 73
Query: 149 -------AIERGVT---QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
A+ +G+ + L+ L + E+G P T + V+ C K +A +
Sbjct: 74 PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEM 133
Query: 199 LFLMYEHGKIPS 210
L M+E G P
Sbjct: 134 LQEMFEKGLAPC 145
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
+ G PDV TYT M +C GR NEA +L E + GVT +
Sbjct: 384 SSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVD------------------ 425
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ +N ++ +G+ A+ +L M +P++ ++ +L++ L
Sbjct: 426 TMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHL 471
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ + GR+ EA +LM + +G+ D Y +MDG +G+++ A+ +L + N
Sbjct: 401 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 460
Query: 158 VVTLIQLLQRL 168
T LL+ L
Sbjct: 461 QFTYFILLRHL 471
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLL----------MALVMLNE------QDTAV 92
KA +E +IF+++K+ G +N ++ A +L E Q T
Sbjct: 575 KAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVA 634
Query: 93 KFFS---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ + + R++EAY + K+ G++ +V Y++++DGF KVGR +EA +L E
Sbjct: 635 TYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEM 694
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+++G+T NV T LL L EM P T T++ +I LC V K
Sbjct: 695 MKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKY 754
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+KA + M + G +P+ ++ +I L
Sbjct: 755 NKAFVFWQDMQKQGLVPNVVTYTTMISGL 783
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR++EAY +L + GL P+VYT+ +++D K NEA+ E N T
Sbjct: 681 VGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYT 740
Query: 161 ---LIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI L R++ G +P +T+ +I L VG I A L
Sbjct: 741 YSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 800
Query: 204 EHGKIPSRTSHDMLIKKL 221
+G IP S + LI+ +
Sbjct: 801 ANGGIPDAASFNALIEGM 818
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 18/137 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-AIERGVTQNVV- 159
G V+ A++ +K GLKPD +YT+++ CK GR EA EL + ER V
Sbjct: 263 GNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAY 322
Query: 160 -TLI-------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T+I +LL+RL E G IP ++FN+++ L K+ +AL L +M +
Sbjct: 323 NTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK 382
Query: 205 HGKIPSRTSHDMLIKKL 221
+ P+ ++++++I L
Sbjct: 383 DAE-PNSSTYNIIIDML 398
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 37/211 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFN---DLLM-------ALVMLNEQDTAVKF---F 95
K + E + +F +KKD S S +N D+L A +L+E + A F
Sbjct: 366 KKRKVDEALSLFEVMKKDAEPNS-STYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLL 424
Query: 96 SNHLMVGRV------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ ++MV R+ EEAY++ + G PD TY +++DG K G+ +EA L +
Sbjct: 425 TVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 484
Query: 150 IERGVTQNVVTLIQLLQ------RLEMGH-----------IPRTITFNNVIQALCGVGKI 192
++ G N V L++ R E GH P N + + G++
Sbjct: 485 LDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEV 544
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
K ++ + +G +P S+ +LI L +
Sbjct: 545 EKGRMIFEDIRSYGFLPDVRSYSILIHGLTK 575
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 27/146 (18%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF----- 95
A RF D K L ER+ ++ G SV FN +L L + D A+ F
Sbjct: 332 AGRFEDAYK---LLERL------RERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK 382
Query: 96 ------SNHLMV-------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
S + ++ GRVEEAY +L +++ L P++ T ++D CK + EA
Sbjct: 383 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEA 442
Query: 143 MELLNEAIERGVTQNVVTLIQLLQRL 168
++ A +RG + VT L+ L
Sbjct: 443 YKIFESASQRGCNPDCVTYCSLIDGL 468
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 20/201 (9%)
Query: 41 AQRFVDKIKASPLKERIDIFN----SIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
A VD++K S L+ I ++N K G F L A + + +
Sbjct: 233 ALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIW 292
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
GR+ EA E+ ++ + P Y Y ++ G+ GR +A +LL ERG
Sbjct: 293 VLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIP 352
Query: 157 NVVTL----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+VV+ + L + ++ P + T+N +I LC G++ +A +L
Sbjct: 353 SVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILD 412
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M P+ + ++++ +L
Sbjct: 413 EMEHASLFPNLLTVNIMVDRL 433
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V +A ++ VK L+PD+ Y +D F K G + A + +E +G+ + V+
Sbjct: 228 GQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSY 287
Query: 162 IQLLQRL----EMGH-------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L +G +P +N +I G+ A LL + E
Sbjct: 288 TSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRE 347
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G IPS S + ++ L ++
Sbjct: 348 RGCIPSVVSFNSILTCLGKK 367
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE+ + ++++ G PDV +Y+ ++ G K G++ E + + ++G +
Sbjct: 542 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR-- 599
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N V+ C GK+HKA +L M E P+ ++ ++ L
Sbjct: 600 ----------------AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 643
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 19/140 (13%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
+KA + E + F S+K+ + ++ L+ L + + + A F+
Sbjct: 714 VKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNV 773
Query: 96 -------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
S VG + +AY + K +G PD ++ A+++G R+ EA ++ E
Sbjct: 774 VTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEE 833
Query: 149 AIERGVTQNVVTLIQLLQRL 168
RG N+ + I LL L
Sbjct: 834 TRLRGCRINIKSCISLLDAL 853
>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA M ++N G+ P++YTY +MDG+CK+ +A+EL E + G+ NVVT
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFG 302
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G +P +N +I C G + +AL L + +H
Sbjct: 303 ILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKH 362
Query: 206 GKIPSRTSHDMLIKKL 221
+P ++ +LIK L
Sbjct: 363 EILPDVFTYSILIKGL 378
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
K + +K+ ++++ + DG +V F L+ L +E +A KF
Sbjct: 274 CKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNI 333
Query: 96 -------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ G + EA + ++ + PDV+TY+ ++ G C V R EA LL E
Sbjct: 334 FVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQE 393
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
++G N VT L+ Q E G P ITF+ +I C GK
Sbjct: 394 MKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGK 453
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A+ L M G +P ++ LI
Sbjct: 454 MEAAMGLYTEMVIKGLLPDVVAYTALI 480
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A E+ + G++P++ T++ ++DG+CK G+ AM L E + +G+ +VV
Sbjct: 417 GNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAY 476
Query: 162 IQLLQ------------RL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
L+ RL E G P T + +I LC G+I A+ L
Sbjct: 477 TALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR + +++ ++ G P+V TY ++DG C+ G +A L +E IE+ + VV
Sbjct: 172 GRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIY 231
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ L G +P T+N ++ C + + KAL L M
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLG 291
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ + +LI L
Sbjct: 292 DGLLPNVVTFGILIDGL 308
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ + V++A E+ + DGL P+V T+ ++DG CK A + L + GV
Sbjct: 272 GYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVP 331
Query: 157 NVVTL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLL 199
N+ + L +E I P T++ +I+ LCGV ++ +A LL
Sbjct: 332 NIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLL 391
Query: 200 FLMYEHGKIPSRTSHDMLI 218
M + G +P+ +++ LI
Sbjct: 392 QEMKKKGFLPNAVTYNTLI 410
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 78/180 (43%), Gaps = 25/180 (13%)
Query: 36 PRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D K +++ I++ + + + G ++ F+ L+ + + A+
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460
Query: 95 FS-------------------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
++ H G +EA+ + ++ GL P+V+T + ++DG CK
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCK 520
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
GR ++A++L + + T + L R P + + +IQ LC G+I KA
Sbjct: 521 DGRISDAIKLF---LAKTGTDTTGSKTNELDRSLCS--PNHVMYTALIQGLCTDGRIFKA 575
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G VEEA + + K D L P + ++DG K GR + ++ + + RG + NVVT
Sbjct: 139 MGLVEEA--LWVYYKMDVL-PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVT 195
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + +E P + + +I+ LCG +I +A + M
Sbjct: 196 YGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMR 255
Query: 204 EHGKIPSRTSHDMLI 218
G +P+ +++ ++
Sbjct: 256 NSGMLPNLYTYNTMM 270
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 115/275 (41%), Gaps = 64/275 (23%)
Query: 9 PTPFSVL------LVDSPSRSPSAAESL--DLKENPRSLQAQRFVDKIKASPLKERIDIF 60
P+P VL L DS RSP+ + L K++ R A V ++ L I
Sbjct: 26 PSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCC 85
Query: 61 NSIKKD-------GTNWSVSDF-------------NDLLMALVMLNEQDTAVK------- 93
N++ KD W V +F + L+ A + E DTA K
Sbjct: 86 NALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRE 145
Query: 94 ------------FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141
+ G VEEA+ ++++ GL PD +TY A+++G CK RSNE
Sbjct: 146 RGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNE 205
Query: 142 AMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQ 184
A LL+E + NVV L+ + + G P IT++N+++
Sbjct: 206 AKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVR 265
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
LC +G++ +A LLL M P +++++I+
Sbjct: 266 GLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 300
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 23/199 (11%)
Query: 41 AQRFVDKIKASPLKER----IDIFNS-IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
A++ V ++ + LK ID+ S K D S F +L VML+ + +
Sbjct: 451 AEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGI-LI 509
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
N G +E A+ +L ++ +G PDV+ Y++++ G CK +A +L+E ++GV
Sbjct: 510 HNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVD 569
Query: 156 QNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
N+V L+ L G +P +T+ ++I C VG I A L
Sbjct: 570 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 629
Query: 199 LFLMYEHGKIPSRTSHDML 217
M G P + +L
Sbjct: 630 YNEMLATGITPDAFVYSVL 648
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A+ +L ++N G+ P+VYTY+ ++ G C+ G +A +LL E +G+ N L
Sbjct: 309 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 368
Query: 165 L-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ + ++ +P +N++I L VG++ ++ M E G
Sbjct: 369 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL 428
Query: 208 IPSRTSHDMLI 218
+P+ ++ LI
Sbjct: 429 LPNEFTYSGLI 439
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRVEE+ + ++ GL P+ +TY+ ++ G+ K G A +L+ ++ G+ N V
Sbjct: 410 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 469
Query: 161 LIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
I LL+ L+ G + + +I L G + A +L +
Sbjct: 470 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIE 529
Query: 204 EHGKIPSRTSHDMLIKKL 221
++G +P + LI L
Sbjct: 530 KNGSVPDVHVYSSLISGL 547
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG + A+ + + G+ PD + Y+ + G G +AM L+ E R
Sbjct: 620 VGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLR-------- 671
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
GH + +FNN++ C GK+ + L LL ++ G +P+ + + +I
Sbjct: 672 ----------GHASIS-SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISG 720
Query: 221 LDQ 223
L +
Sbjct: 721 LSE 723
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHIPRTITFNN 181
+ ++ ++DGFCK G+ E ++LL+ + RG+ N +T+ ++ L E G + T
Sbjct: 676 ISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFV 735
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+Q L M GKIP DM+
Sbjct: 736 ELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMI 771
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLN 86
L ++ RS +A+ +D++ + LK + ++ ++ ++ + + +++ A V N
Sbjct: 197 LCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 256
Query: 87 E--QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
+ D V+ +G+++ A +L + D +PD TY I++G + +A
Sbjct: 257 KITYDNLVRGLCK---MGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFR 313
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+E G++ NV T++ +I LC G+ KA LL M
Sbjct: 314 LLSEMENAGISPNVY------------------TYSIMIHGLCQSGEPEKASDLLEEMTT 355
Query: 205 HGKIPSRTSHDMLI 218
G P+ + LI
Sbjct: 356 KGLKPNAFVYAPLI 369
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
S + G V A E+ + + PD+Y Y +++ G KVGR E+ + + ERG
Sbjct: 368 LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 427
Query: 154 VTQNVVTLIQLLQ 166
+ N T L+
Sbjct: 428 LLPNEFTYSGLIH 440
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 11/136 (8%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ----DT 90
P +L + + + +A L E IF +++ + + F+ L M M+N+ D
Sbjct: 709 PNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMD--MINQGKIPLDV 766
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+H G +++A ML +V P +Y AI+D C+ G+ +EA+ LL E
Sbjct: 767 VDDMIRDHCKEGNLDKAL-MLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEM 825
Query: 150 IERGVTQNVVTLIQLL 165
+RG Q TL+ LL
Sbjct: 826 DKRGNLQP--TLVALL 839
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 36/207 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALV-------------MLNEQDTAVKFFS--- 96
L + ID+FN + + V FN L+ A M+ +Q F +
Sbjct: 276 LNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNS 335
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ +V V +A + + G+ PD+ +Y+ +++GFCK+ + +EAM L E +
Sbjct: 336 LMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKN 395
Query: 154 VTQNVVTL----------------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKAL 196
+ +VVT +QL+ ++ +P TI T+N+++ ALC + ++ KA+
Sbjct: 396 IIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAI 455
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
LL + + G P+ ++ +LIK L Q
Sbjct: 456 ALLTKLKDKGIQPNMYTYSILIKGLCQ 482
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 17/161 (10%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F+D ++AL +Q + VG A ++L V + ++P+V Y I+D C
Sbjct: 177 FHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMC 236
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMGHI-PRTI 177
KV NEA +L +E I +G++ +VVT I L ++ + +I P
Sbjct: 237 KVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVY 296
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN ++ A C GK+ + + +M + G P+ +++ L+
Sbjct: 297 TFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLM 337
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 23/146 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V V EA+++ + + G+ PDV TY+A++ GFC +G+ N+A++L N+ I + +V T
Sbjct: 238 VKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYT 297
Query: 161 LIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ ++ G P +T+N+++ C V +++KA + M
Sbjct: 298 FNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMA 357
Query: 204 EHGKIPSRTSHDML------IKKLDQ 223
+ G P S+ ++ IKK D+
Sbjct: 358 QGGVNPDIQSYSIMINGFCKIKKFDE 383
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ +V++A +L +K+ G++P++YTY+ ++ G C+ G+ +A ++ + +G NV
Sbjct: 448 IHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVD- 506
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
T+ +IQ C G ++AL LL M ++G IP +++++I
Sbjct: 507 -----------------TYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILS 549
Query: 221 L 221
L
Sbjct: 550 L 550
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV- 159
+G + A+ + + G PD T+T ++ G C G+ +A ++ + G + +
Sbjct: 133 LGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQIS 192
Query: 160 --TLIQ-------------LLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
TLI LLQR++ + P + +N +I ++C V +++A L M
Sbjct: 193 YGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMI 252
Query: 204 EHGKIPSRTSHDMLI 218
G P ++ LI
Sbjct: 253 SKGISPDVVTYSALI 267
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
DT + G EA +L ++++G PD TY I+ K ++ A +LL E
Sbjct: 506 DTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLRE 565
Query: 149 AIERGVT-QNVVTLIQLLQRLEMGHIPRTIT 178
I RGV + + Q + ++ P+T+T
Sbjct: 566 MIARGVRPRQIAIWFQKKKEYDVSSEPKTLT 596
>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 472
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 36/199 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------------NH 98
+ IF + K G + + L+ L D A K F+ N
Sbjct: 177 LKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLING 236
Query: 99 LMVGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
L + V+EA L +K+ G++P+V+TY+++MDG CK GRS +AMEL + RG N
Sbjct: 237 LCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPN 296
Query: 158 VVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+VT ++LL R+ + G P + VI C + K +A L
Sbjct: 297 MVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLD 356
Query: 201 LMYEHGKIPSRTSHDMLIK 219
M G P+R + ++ +K
Sbjct: 357 EMILGGITPNRLTWNIHVK 375
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------------ 102
+ + +F+ +K + S + +L LV N+ + A KF+ N +G
Sbjct: 104 DSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLI 163
Query: 103 --------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
V+ ++ + + G PD YTY ++ G C+ GR +EA +L E +E+
Sbjct: 164 KALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDC 223
Query: 155 TQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALL 197
VVT L+ L EM G P T+++++ LC G+ +A+
Sbjct: 224 APTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAME 283
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L +M G P+ ++ LI L ++
Sbjct: 284 LFEMMMARGCRPNMVTYTTLITGLCKE 310
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 27/206 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIK----KDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
+A R+++++K+ ++ + ++S+ KDG + + +++MA T
Sbjct: 245 EAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLI 304
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ +++EA E+L + GLKPD Y ++ GFC + + EA L+E I G+T
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGIT 364
Query: 156 QN-------VVTLIQLLQRLEMGHIPRTI----------------TFNNVIQALCGVGKI 192
N V T ++++ L + R T ++++ LC G+
Sbjct: 365 PNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEF 424
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
KA+ L+ + G IPS+ + +LI
Sbjct: 425 QKAVQLVDEIVTDGCIPSKGTWKLLI 450
>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 584
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ +EM ++ G+ P+++TY +M+ CK GR+ +A ++ +E ERGV+ N+VT
Sbjct: 247 GIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTY 306
Query: 162 IQLLQRL--EM---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P IT+N +I CGV K+ KAL L +
Sbjct: 307 NTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKS 366
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 367 RGLSPSLVTYNILV 380
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 35/212 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV----------MLNEQDTAV--KFF 95
+++ L I FN + G + FN+LL +V NE V +
Sbjct: 105 VQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIKVVLDVY 164
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
S +++ G +E+++++L+ ++ G P+V YT ++DG CK G +A +L E
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+ G+ N T L+ L E G P T+N V+ LC G+
Sbjct: 225 GKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRT 284
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A + M E G + +++ LI L ++
Sbjct: 285 KDAFKVFDEMRERGVSCNIVTYNTLIGGLCRE 316
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E+A ++ +++ GL PDV+TY+ ++ GFC GR NEA L +E+
Sbjct: 424 MEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEK----------- 472
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+ E P + +N ++ C G ++AL L M E P+ S+ +I+ L +
Sbjct: 473 ---KFE----PNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCK 525
Query: 224 Q 224
+
Sbjct: 526 E 526
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 33/178 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117
++ + +K DG N ++ +N L+ V ++ +A + ++K+
Sbjct: 324 EVMDQMKSDGINPNLITYNTLIDGFCG----------------VRKLGKALSLCRDLKSR 367
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL---------------- 161
GL P + TY ++ GFCK G ++ A +++ E ERG+ + VT
Sbjct: 368 GLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKA 427
Query: 162 IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IQL + E+G P T++ +I C G++++A L M E P+ ++ ++
Sbjct: 428 IQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMV 485
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA E L + N G+ P+V TY++I+ GFC +GRSNEA L + +ER V + VT
Sbjct: 133 ITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNI 192
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L E G P T+N ++ C ++ +A L +M G
Sbjct: 193 LVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKG 252
Query: 207 KIPSRTSHDMLIK 219
PS S+++LIK
Sbjct: 253 CAPSVRSYNILIK 265
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 37/223 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ VD + K + E +F ++ + G +V+ +N L+ ++ D A K
Sbjct: 185 PDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKL 244
Query: 95 FS-------------------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
F+ H GR++EA +L + + L PD TY+ +M GFC+
Sbjct: 245 FNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQ 304
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI----------------PRTIT 178
GR +A +LL E G+ +++T +L L + GH+ P
Sbjct: 305 DGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFI 364
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +IQ +C GK+ A L ++ G P ++ ++I L
Sbjct: 365 YTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGL 407
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G A ++L ++ G KP+V Y+ I+D CK EAME L+E + RG++ NVVT
Sbjct: 95 MGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVT 154
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+L Q +E +P T+TFN ++ L G I +A + M
Sbjct: 155 YSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMI 214
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
E G P+ +++ L+ Q
Sbjct: 215 EKGVEPNVNTYNALMDGYCSQ 235
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------- 168
G +PDV TY+ I++G CK+G + A++LL + E+G NVV ++ L
Sbjct: 77 GYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEA 136
Query: 169 -----EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
EM G P +T+++++ C +G+ ++A L M E +P + ++L+
Sbjct: 137 MEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDG 196
Query: 221 LDQQ 224
L ++
Sbjct: 197 LSKE 200
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR ++A ++L +++ GL PD+ TY+ ++DG CK G +EA ELL E + N+
Sbjct: 306 GRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIY 365
Query: 162 IQLLQ------RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+Q +LE G P +T+ +I L G ++A L M
Sbjct: 366 TILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAV 425
Query: 205 HGKIPSRTSHDMLIK 219
HG +P+ +++++I+
Sbjct: 426 HGCLPNSCTYNVIIQ 440
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA + + G++P+V TY A+MDG+C + +EA +L N + +G +V +
Sbjct: 201 GMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSY 260
Query: 162 IQLLQR--------------LEMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ EM H P T+T++ +++ C G+ A LL M
Sbjct: 261 NILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRS 320
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G +P ++ +++ L +Q
Sbjct: 321 YGLLPDLMTYSIVLDGLCKQ 340
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA+E+L ++ ++P+++ YT ++ G C G+ A EL + +G+ +VVT
Sbjct: 341 GHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTY 400
Query: 162 IQLLQRL----------EM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L E+ G +P + T+N +IQ G A L+ M
Sbjct: 401 TVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVG 460
Query: 205 HGKIPSRTSHDML 217
G ++ ML
Sbjct: 461 RGFSADSSTFQML 473
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 119 LKPDVYTYTAIMDGFCKVGRS--NEAMELLNEAIERGVTQNVVTLIQLLQRL-------- 168
++PDVYT T +++ FC + A +L + G+ N VT LL L
Sbjct: 6 IRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIID 65
Query: 169 ---------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+MG+ P IT++ +I LC +G A+ LL M E G P+ + +I
Sbjct: 66 AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIID 125
Query: 220 KL 221
L
Sbjct: 126 SL 127
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S L G EA E+ ++ G P+ TY I+ GF + G ++ A L+ E
Sbjct: 399 TYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEM 458
Query: 150 IERGVTQNVVTLIQLLQRLE 169
+ RG + + T Q+L LE
Sbjct: 459 VGRGFSADSSTF-QMLSDLE 477
>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
[Coelocarpum swinglei]
Length = 429
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 33/187 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K ++ + +F++I K G SV FN L+ + ++ +G ++E +
Sbjct: 152 KEGDIRVALSVFDAITKWGLRPSVVSFNTLM----------------NGYIRLGDLDEGF 195
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
+ + G++PDVYTY+ +++G CK + ++A EL +E +++G+ N VT L+
Sbjct: 196 RLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGH 255
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
Q L P IT+N +I LC G + +A L+ M G P +
Sbjct: 256 CKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDK 315
Query: 212 TSHDMLI 218
S+ LI
Sbjct: 316 ISYTTLI 322
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ ++ GLKPD +YT ++DG CK G A E I+ + + V
Sbjct: 294 GDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAY 353
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ +I C G + LL M
Sbjct: 354 TALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQR 413
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 414 DGHVPSVVTYNVLM 427
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 19/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A E++ + +G PDVYTY +++ G CK+G EA+E+L++ I R + N VT
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY 368
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF-LMY 203
L+ L G +P TFN++IQ LC + + H+ + LF M
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC-LTRNHRVAMELFEEMR 427
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P +++MLI L
Sbjct: 428 SKGCEPDEFTYNMLIDSL 445
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K + ++E ++ + G V FN L+ L + A++ F
Sbjct: 377 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEF 436
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ ++++ G+++EA ML ++ G V TY ++DGFCK ++ EA E+ +E
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEM 496
Query: 150 IERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
GV++N VT QL+ ++ M G P T+N+++ C G I
Sbjct: 497 EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDI 556
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KA ++ M +G P ++ LI L
Sbjct: 557 KKAADIVQAMTSNGCEPDIVTYGTLISGL 585
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRVE+A + + N DG PD YT+ +++G CK G A+E+++ ++ G +V T
Sbjct: 273 GRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYT 332
Query: 161 LIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L ++G + P T+T+N +I LC ++ +A L ++
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392
Query: 204 EHGKIPSRTSHDMLIKKL 221
G +P + + LI+ L
Sbjct: 393 SKGILPDVCTFNSLIQGL 410
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 33/187 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA +K I+I + + ++G + V +N ++ L L G V+EA
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKL----------------GEVKEAV 350
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+L + P+ TY ++ CK + EA EL +G+ +V T L+Q L
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Query: 169 --------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
EM G P T+N +I +LC GK+ +AL +L M G S
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470
Query: 212 TSHDMLI 218
+++ LI
Sbjct: 471 ITYNTLI 477
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 42/213 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV--------------MLNEQDTAVKF 94
KA+ +E +IF+ ++ G + + +N L+ L M+ E K+
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKY 541
Query: 95 FSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ G +++A +++ + ++G +PD+ TY ++ G CK GR A +LL
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601
Query: 150 IERGV--------------------TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC-G 188
+G+ T+ + ++L++ E P +++ V + LC G
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAP--PDAVSYRIVFRGLCNG 659
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G I +A+ L + E G +P +S ML + L
Sbjct: 660 GGPIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 34/173 (19%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G VS FN L+ AL ++ A+ ML ++ + GL PD T+
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAIL----------------MLEDMPSYGLVPDEKTF 227
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRL-- 168
T +M G+ + G + A+ + + +E G + + V++ + +Q +
Sbjct: 228 TTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSN 287
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G P TFN ++ LC G + A+ ++ +M + G P +++ +I L
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 115/275 (41%), Gaps = 64/275 (23%)
Query: 9 PTPFSVL------LVDSPSRSPSAAESL--DLKENPRSLQAQRFVDKIKASPLKERIDIF 60
P+P VL L DS RSP+ + L K++ R A V ++ + I
Sbjct: 153 PSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCC 212
Query: 61 NSIKKD-------GTNWSVSDF-------------NDLLMALVMLNEQDTAVK------- 93
N++ KD W V +F + L+ A + E DTA K
Sbjct: 213 NALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRE 272
Query: 94 ------------FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141
+ G VEEA+ ++++ GL PD +TY A+++G CK RSNE
Sbjct: 273 RGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNE 332
Query: 142 AMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQ 184
A LL+E + NVV L+ + + G P IT++N+++
Sbjct: 333 AKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVR 392
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
LC +G++ +A LLL M P +++++I+
Sbjct: 393 GLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 427
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 23/200 (11%)
Query: 40 QAQRFVDKIKASPLKER----IDIFNS-IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
A++ V ++ + LK ID+ S K D S F +L VML+ + +
Sbjct: 577 SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGI-L 635
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
N G +E A+ +L ++ +G PDV+ Y++++ G CK +A +L+E ++GV
Sbjct: 636 IHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGV 695
Query: 155 TQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALL 197
N+V L+ L G +P +T+ ++I C VG I A
Sbjct: 696 DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFY 755
Query: 198 LLFLMYEHGKIPSRTSHDML 217
L M G P + +L
Sbjct: 756 LYNEMLATGITPDAFVYSVL 775
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A+ +L ++N G+ P+VYTY+ ++ G C+ G +A +LL E +G+ N L
Sbjct: 436 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 495
Query: 165 L-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ + ++ +P +N++I L VG++ ++ M E G
Sbjct: 496 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL 555
Query: 208 IPSRTSHDMLI 218
+P+ ++ LI
Sbjct: 556 LPNEFTYSGLI 566
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRVEE+ + ++ GL P+ +TY+ ++ G+ K G A +L+ ++ G+ N V
Sbjct: 537 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 596
Query: 161 LIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
I LL+ L+ G + + +I L G + A +L +
Sbjct: 597 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIE 656
Query: 204 EHGKIPSRTSHDMLIKKL 221
++G +P + LI L
Sbjct: 657 KNGSVPDVHVYSSLISGL 674
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 25/189 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
+A +D++ + I +N++ K +++ + FN +L ++ N T
Sbjct: 682 KAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCV-TYTSL 740
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
VG + A+ + + G+ PD + Y+ + G G +AM L+ E R
Sbjct: 741 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLR-- 798
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
GH + +FNN++ C GK+ + L LL ++ G +P+ +
Sbjct: 799 ----------------GHASIS-SFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTI 841
Query: 215 DMLIKKLDQ 223
+ +I L +
Sbjct: 842 ENIISGLSE 850
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHIPRTITFNN 181
+ ++ ++DGFCK G+ E ++LL+ + RG+ N +T+ ++ L E G + T
Sbjct: 803 ISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFV 862
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+Q L M GKIP DM+
Sbjct: 863 ELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMI 898
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLN 86
L ++ RS +A+ +D++ + LK + ++ ++ ++ + + +++ A V N
Sbjct: 324 LCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 383
Query: 87 E--QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
+ D V+ +G+++ A +L + D +PD TY I++G + +A
Sbjct: 384 KITYDNLVRGLCK---MGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFR 440
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+E G++ NV T++ +I LC G+ KA LL M
Sbjct: 441 LLSEMENAGISPNVY------------------TYSIMIHGLCQSGEPEKASDLLEEMTT 482
Query: 205 HGKIPSRTSHDMLI 218
G P+ + LI
Sbjct: 483 KGLKPNAFVYAPLI 496
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
S + G V A E+ + + PD+Y Y +++ G KVGR E+ + + ERG
Sbjct: 495 LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 554
Query: 154 VTQNVVTLIQLLQ 166
+ N T L+
Sbjct: 555 LLPNEFTYSGLIH 567
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 10/145 (6%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ----DT 90
P +L + + + +A L E IF +++ + + F+ L M M+N+ D
Sbjct: 836 PNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMD--MINQGKIPLDV 893
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+H G +++A ML +V P +Y AI+D C+ G+ +EA+ LL E
Sbjct: 894 VDDMIRDHCKEGNLDKAL-MLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEM 952
Query: 150 IERGVTQNVVTLIQLLQRLEM-GHI 173
+RG+ + + LL L G+I
Sbjct: 953 DKRGICPSENQCLILLTNLHTSGYI 977
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
KA L ++IF+ ++ G + + L+ + A K S
Sbjct: 359 KAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVV 418
Query: 97 -------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ +GRV+EA +L + GL PDV +Y+ ++ GFC+ +A ++ E
Sbjct: 419 TYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEM 478
Query: 150 IERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKI 192
+E+GV + VT L+Q L EM G P +T+ ++I A C G++
Sbjct: 479 VEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGEL 538
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
KAL L M + G +P ++ +LI L+++
Sbjct: 539 SKALRLHDEMVQRGFLPDNVTYSVLINGLNKK 570
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ E E++ ++ GL PD TY +++GFCK G ++ + LL+E + +G++ NVVT
Sbjct: 291 GRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTY 350
Query: 162 IQLLQRL-EMGHIPRTI----------------TFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + + G++ R + T+ +I C G +++A +L M
Sbjct: 351 TTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIV 410
Query: 205 HGKIPSRTSHDMLI 218
G PS +++ L+
Sbjct: 411 SGFSPSVVTYNALV 424
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+ + ++ +G+ P+V TY ++D CK + EAM LL GV N+++
Sbjct: 221 GDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISY 280
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM G +P +T+N ++ C G +H+ L+LL M
Sbjct: 281 NSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVG 340
Query: 205 HGKIPSRTSHDMLI 218
G P+ ++ LI
Sbjct: 341 KGLSPNVVTYTTLI 354
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--- 161
++A + ++ +G+ P+VYTY I+ G G + + + + + G++ NVVT
Sbjct: 189 DDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTL 248
Query: 162 -------------IQLLQRLEMGHIPRT-ITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ LL+ + +G + I++N+VI LCG G++ + L+ M G
Sbjct: 249 IDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGL 308
Query: 208 IPSRTSHDMLIKKLDQQ 224
+P +++ L+ ++
Sbjct: 309 VPDEVTYNTLVNGFCKE 325
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 25/155 (16%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN-----EAM 143
D VK S +G V +A +L G P V +Y A++D + SN +A
Sbjct: 136 DLVVKSLSR---LGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAE 192
Query: 144 ELLNEAIERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQAL 186
+ + + GV+ NV T + ++++E G P +T+N +I A
Sbjct: 193 RVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDAS 252
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
C K+ +A+ LL M G + S++ +I L
Sbjct: 253 CKKKKVKEAMALLRAMAVGGVAANLISYNSVINGL 287
>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 624
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 20/153 (13%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + F G VE+A E+L + +G PD+ +Y+ ++DG K G++ EA+ELLN
Sbjct: 445 NTIINFLCKK---GLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNV 501
Query: 149 AIERGVTQNVVT----------------LIQLLQRLEMGHI-PRTITFNNVIQALCGVGK 191
I +G+T NV+T +IQ+ ++ I + +N VI +LC +
Sbjct: 502 MINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRE 561
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ L M +G +P+ +++ LIK L +
Sbjct: 562 TDLAIDFLAYMVSNGCMPNESTYTALIKGLASE 594
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF + +V RV E E ++ G PDV TYT +++GFCK G +EA+ LL
Sbjct: 343 VDFFCQNGLVDRVIELLEQMLE---HGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPS 399
Query: 152 RGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHK 194
G N ++ +L+ L + G +P +TFN +I LC G + +
Sbjct: 400 CGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQ 459
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL M +G P S+ +I L +
Sbjct: 460 AIELLKQMLVNGCNPDLISYSTVIDGLGK 488
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 66/179 (36%), Gaps = 59/179 (32%)
Query: 102 GRVEE-------AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
G VEE +E L + G PD+ Y I+DG CK G A E+L+ G+
Sbjct: 238 GDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGL 297
Query: 155 TQNVVT---------------------------------------------------LIQ 163
NVV +I+
Sbjct: 298 KPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIE 357
Query: 164 LL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LL Q LE G +P IT+ VI C G I +A++LL M G P+ S+ +++K L
Sbjct: 358 LLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGL 416
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 27/130 (20%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI----------E 151
G V+E EML + G + D+ +Y A++ G C R + EL++E + +
Sbjct: 200 GCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQ 259
Query: 152 RGVTQNV---VTLI-------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHK 194
G T ++ T+I ++L R+ G P + +N V++ +C + K
Sbjct: 260 HGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEK 319
Query: 195 ALLLLFLMYE 204
A LL MY+
Sbjct: 320 AEELLTEMYQ 329
>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 418
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+SI K G SV FN L+ + ++ +G ++E + + ++ G
Sbjct: 158 VFDSITKWGLRPSVVSFNTLM----------------NGYIKIGDLDEGFRLKSVMQASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
+ PDVYTY+ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 202 VHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 EIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 318
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +P+
Sbjct: 410 XGYVPN 415
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + ++ GL+P V ++ +M+G+ K+G +E L +
Sbjct: 137 YFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSV 196
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
GV +V T L+ + L+ G +P +TF +I C G+
Sbjct: 197 MQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGR 256
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 257 VDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKK 289
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ CK G +LL E G NVVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418
>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 418
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+FN+I K G SV FN L+ + ++ +G ++E + + + G
Sbjct: 158 VFNAITKWGLRPSVVSFNTLM----------------NGYIRLGDLDEGFRLKTAMHASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E +++G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLI 318
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME----LLNEAIER---GV 154
G +++A +++ + GLKPD TYT ++DG CK G A E ++ E I+ G
Sbjct: 290 GDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGY 349
Query: 155 TQNVVTLIQ----------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T + L Q L + L +G P TIT+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G++PS
Sbjct: 410 DGQMPS 415
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A ++L + + GLKPD TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMPSVVT 418
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 19/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A E++ + +G PDVYTY +++ G CK+G EA+E L++ I R + N VT
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTY 368
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF-LMY 203
L+ L G +P TFN++IQ LC + + H+ + LF M
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC-LTRNHRVAMELFEEMR 427
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P +++MLI L
Sbjct: 428 SKGCEPDEFTYNMLIDSL 445
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K + ++E ++ + G V FN L+ L + A++ F
Sbjct: 377 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEF 436
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ ++++ G+++EA ML ++ G V TY ++DGFCK + EA E+ +E
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEM 496
Query: 150 IERGVTQNVV---TLI-------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
GV++N V TLI QL+ ++ M G P T+N+++ C G I
Sbjct: 497 EVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDI 556
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KA ++ M +G P ++ LI L
Sbjct: 557 KKAADIVQAMTSNGCEPDIVTYGTLISGL 585
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRVE+A + + N DG PD YT+ +++G CK G A+E+++ ++ G +V T
Sbjct: 273 GRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYT 332
Query: 161 LIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L ++G + P T+T+N +I LC ++ +A L ++
Sbjct: 333 YNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392
Query: 204 EHGKIPSRTSHDMLIKKL 221
G +P + + LI+ L
Sbjct: 393 SKGILPDVCTFNSLIQGL 410
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 42/213 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV--------------MLNEQDTAVKF 94
KA+ ++E +IF+ ++ G + + +N L+ L M+ E KF
Sbjct: 482 KANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKF 541
Query: 95 FSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ G +++A +++ + ++G +PD+ TY ++ G CK GR A +LL
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601
Query: 150 IERGV--------------------TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC-G 188
+G+ T+ + ++L++ E P +++ V + LC G
Sbjct: 602 QMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAA--PDAVSYRIVFRGLCNG 659
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G I +A+ L + E G +P +S ML + L
Sbjct: 660 GGPIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 33/187 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA +K I+I + + ++G + V +N ++ L L G V+EA
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKL----------------GEVKEAV 350
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E L + P+ TY ++ CK + EA EL +G+ +V T L+Q L
Sbjct: 351 EFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Query: 169 --------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
EM G P T+N +I +LC GK+ +AL +L M G S
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470
Query: 212 TSHDMLI 218
+++ LI
Sbjct: 471 ITYNTLI 477
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 34/173 (19%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G VS FN L+ AL ++ A+ ML ++ + GL PD T+
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAIL----------------MLEDMPSYGLVPDEKTF 227
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRL-- 168
T IM G+ + G + A+ + + +E G + + V++ + +Q +
Sbjct: 228 TTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSN 287
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G P TFN ++ LC G + A+ ++ +M + G P +++ +I L
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR +EA E+ +K G+ PDV +Y+ ++ GFC G+ +++ L +E +++GV ++VT
Sbjct: 250 VGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVT 309
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L + G +P IT+N++I C VG ++ A L M
Sbjct: 310 FSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMP 369
Query: 204 EHGKIPSRTSHDMLI 218
G P S+ LI
Sbjct: 370 SKGLEPDEISYTTLI 384
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 35/194 (18%)
Query: 48 IKASPLKERID----IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
IK ++ RI +F ++K G + + L+ L + A+K
Sbjct: 168 IKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHK------- 220
Query: 104 VEEAYEMLMNVKNDGL--KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
EML + G+ KP V TY+ I+DG CKVGR +EA EL E +G+ +V++
Sbjct: 221 -----EMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISY 275
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + ++ G P +TF+ +I LC GK+ +A LL +M +
Sbjct: 276 STLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQ 335
Query: 205 HGKIPSRTSHDMLI 218
G +P+ +++ LI
Sbjct: 336 RGIVPNLITYNSLI 349
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 39/181 (21%)
Query: 44 FVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG 102
F+D + K L E +++FN +K ++ +++ L+ L G
Sbjct: 453 FLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCK----------------AG 496
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E A+E+ + +GL+PDV TY ++ GFCKVG+ + A L + E G T
Sbjct: 497 KLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCT------- 549
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH----DMLI 218
P I +N ++ C K+ + + LL M + P+ S DML
Sbjct: 550 -----------PDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLC 598
Query: 219 K 219
K
Sbjct: 599 K 599
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
MVG + A E+ +++ + GL+PD +YT +++G+CK + EAM L NE ++ G + NV
Sbjct: 354 MVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVT 413
Query: 160 TLIQLLQRL 168
T LL+ L
Sbjct: 414 TYGTLLKGL 422
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 41/148 (27%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND----GLKPDVYTYT 127
+S FN LL L +N Y L ++ N+ GL PD++T +
Sbjct: 91 ISSFNRLLGGLAKINH--------------------YSQLFSLYNEMRLAGLSPDLFTLS 130
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH--------------- 172
+ + C V R +EA+ + + RG NVVT L++ L M H
Sbjct: 131 ILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKL 190
Query: 173 --IPRTITFNNVIQALCGVGKIHKALLL 198
P +T+ +I+ LC G ++ AL L
Sbjct: 191 GCTPNAVTYGTLIKGLCQTGNVNIALKL 218
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K +KE ++++N + + G + +V+ + LL L G+V +A
Sbjct: 388 CKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGL----------------FQKGKVGDA 431
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV--------- 158
++ +K G+ + Y +DG CK EAMEL NE N+
Sbjct: 432 KKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDG 491
Query: 159 -------VTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
T +L ++L + G P +T+N +I C VG++ A +L M E+G P
Sbjct: 492 LCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPD 551
Query: 211 RTSHDMLI 218
+++ L+
Sbjct: 552 IIAYNTLL 559
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L IDI + K G + +N LL + D A+++ N
Sbjct: 360 LGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419
Query: 99 LMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++ G+VE+A E+L + + G P + TY ++DG K G++ +A++LL+E +
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ + +T L+ L MG P +TFN+++ LC + +A+
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAI 539
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M G P+ TS+ +LI+ L
Sbjct: 540 DFLVYMINRGCKPTETSYTILIEGL 564
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 23/143 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A ++L +++ G PDV TY +++G CK GR +EA++ LN+ G NV+T
Sbjct: 255 VGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L+ L G P +TFN +I LC G + +A+ +L M +HG
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG 374
Query: 207 KIPSRTSHDMLI------KKLDQ 223
P+ S++ L+ KK+D+
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDR 397
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 22/144 (15%)
Query: 96 SNHLM----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+NHL G +EE ++ L N+ G PD+ T ++ GFC++G++ +A ++L
Sbjct: 106 NNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEG 165
Query: 152 RGVTQNVVTL----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
G +V+T + +L R+ + P +T+N ++++LC GK+ +A
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS--PDVVTYNTILRSLCDSGKLKQA 223
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIK 219
+ +L M + P ++ +LI+
Sbjct: 224 MEVLDRMLQRDCYPDVITYTILIE 247
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A E+L + PDV TYT +++ C+ +AM+LL+E +RG T +VVT
Sbjct: 218 GKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTY 277
Query: 162 IQLLQ------RLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL+ G P IT N +++++C G+ A LL M
Sbjct: 278 NVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR 337
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G PS + ++LI L ++
Sbjct: 338 KGFSPSVVTFNILINFLCRK 357
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+ F ++GR A ++L + G +P+ +Y ++ GFCK + + A+E L +
Sbjct: 351 INFLCRKGLLGR---AIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS 407
Query: 152 RGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHK 194
RG ++VT +++L +L G P IT+N VI L GK K
Sbjct: 408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK 467
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ LL M P ++ L+ L ++
Sbjct: 468 AIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 90/210 (42%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
+ S + + + + + ++ G V +N L+ + D A+KF ++
Sbjct: 250 CRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNV 309
Query: 98 --HLMV-------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
H ++ GR +A ++L ++ G P V T+ +++ C+ G A+++L +
Sbjct: 310 ITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEK 369
Query: 149 AIERGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGK 191
+ G N ++ I+ L+R+ G P +T+N ++ ALC GK
Sbjct: 370 MPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGK 429
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ A+ +L + G P +++ +I L
Sbjct: 430 VEDAVEILNQLSSKGCSPVLITYNTVIDGL 459
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ + E I F+ ++ G + FN +++ L + D A+ F
Sbjct: 496 REGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDF-------------- 541
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
L+ + N G KP +YT +++G G + EA+ELLNE +G+ +
Sbjct: 542 --LVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLMK 587
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 588
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 31/196 (15%)
Query: 44 FVDKIKASPLKERI----DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL 99
F IK ++ RI +F ++K G +V + L+ L L + A+K+ L
Sbjct: 164 FTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEML 223
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+ + N + P+V +Y+ I+DG CKVG EA+ L NE +++GV NVV
Sbjct: 224 -----NDTSPYVFNCR-----PNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVV 273
Query: 160 T---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T LI +L + +++G +P T+ ++I+ C VG ++ A L M
Sbjct: 274 TFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSM 333
Query: 203 YEHGKIPSRTSHDMLI 218
G P S++MLI
Sbjct: 334 PSKGYEPDVISYNMLI 349
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 23/147 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V R+ E + + G PDV T+T ++ G C R EA +L + G T NVVT
Sbjct: 139 VNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVT 198
Query: 161 LIQLLQRL-EMGHI----------------------PRTITFNNVIQALCGVGKIHKALL 197
L++ L +G+I P I+++ +I LC VG +A+
Sbjct: 199 YGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAIC 258
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L M + G P+ + +LI L ++
Sbjct: 259 LFNEMVDQGVQPNVVTFSVLIDMLCKE 285
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA ++ +++ +K D+ T+ ++DG CK G+ A EL + E G+
Sbjct: 426 GYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQ------ 479
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P + ++++I C G++ KA +L M E+G P ++ +L++
Sbjct: 480 ------------PDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMR 525
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T +VG + A E+ +++ + G +PDV +Y +++G+CK + EAM+L NE
Sbjct: 309 TYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEM 368
Query: 150 IERGVTQNVVTLIQLLQRL 168
+ G+ +V T LL+ L
Sbjct: 369 LHVGMWPDVKTSGVLLKAL 387
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 52/214 (24%)
Query: 13 SVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSI-----KKDG 67
S L SP+ S + + NP+SL A SP ERI + I K
Sbjct: 25 SSLFTHSPAVLSSNPQ-ISSANNPKSLHA---------SP--ERISFQHGIPMFLHKCKT 72
Query: 68 TNWSVSD---FNDLLMALVMLNEQDTAVKFFSNHLMVG--RVE---EAYEMLMNVKNDGL 119
+ SV+ F DL+M + F N L+ G ++E + + + + GL
Sbjct: 73 GSISVTQAHQFFDLMMRSI----------FSFNRLLAGLAKIEHYSQVFSLYKQMHLAGL 122
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----------- 168
PD+ T +++ C V R NE + + + RG +VVT L++ L
Sbjct: 123 WPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATK 182
Query: 169 ------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
++G P +T+ +I+ LC +G I+ AL
Sbjct: 183 LFMRMQKLGCTPNVVTYGTLIKGLCALGNINIAL 216
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
Query: 44 FVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------ 96
F+D + K + E + +FN ++ + F L+ L + +TA + F
Sbjct: 418 FLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEG 477
Query: 97 -------------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
G+V++A + ++ +G PD+ TY+ +M GF + + + +
Sbjct: 478 IQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVV 537
Query: 144 ELLNEAIERGV 154
+LL+ IE+ V
Sbjct: 538 QLLHRMIEKDV 548
>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
Length = 690
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 26/169 (15%)
Query: 76 NDLLMALVMLNEQDT------AVKFF---SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
N++ MA+ + +E+ + A+ +F S GR+E+A M ++K G K D Y
Sbjct: 332 NNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAY 391
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLE 169
++ GFC+ R +EA ELL E E G+ +V T LL + ++
Sbjct: 392 NILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMID 451
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G P ITF ++ C VGKI +AL +L M E G P+ ++ LI
Sbjct: 452 DGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLI 500
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 34/169 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E ++ +K+ G V +N LL S G E+L
Sbjct: 404 LHEAYELLQEMKEVGIRPDVCTYNTLL----------------SGSCKAGDFAAVDELLG 447
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+ +DG +P V T+ ++ G+CKVG+ +EA+ +L E G+
Sbjct: 448 KMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIH----------------- 490
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P + +N +I LC G + A+ L M E + T+ + L+K L
Sbjct: 491 -PNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGL 538
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------ 154
VG + AYE++ ++N+G+ ++ T I+ G C+ GR+ A+E E +R V
Sbjct: 259 VGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFRE--KRTVWPEGKG 316
Query: 155 --------------TQNVVTLIQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
T NV ++L +++ GH P I + +I L G++ A +
Sbjct: 317 NAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMA 376
Query: 200 FLMYEHGKIPSRTSHDMLI 218
M E G ++++LI
Sbjct: 377 SSMKEAGFKLDTKAYNILI 395
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDF---NDLLMALVMLNEQDTAVKFFS 96
+A + ++K ++ + +N++ + DF ++LL ++ Q + + F +
Sbjct: 406 EAYELLQEMKEVGIRPDVCTYNTLLSG--SCKAGDFAAVDELLGKMIDDGCQPSVITFGT 463
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ VG+++EA +L ++ G+ P+ Y ++D CK G + A+EL +E E+
Sbjct: 464 LVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKS 523
Query: 154 VTQNVVTLIQLLQRLEMGHIP 174
V NV T LL+ L ++P
Sbjct: 524 VPANVTTFNALLKGLRDKNMP 544
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 33/146 (22%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
FN +L AL + + + ++ LM G ++PDV TY +++G C
Sbjct: 139 FNSILAALARVRDVPGMARIYA--LMQGCAS-------------VRPDVVTYGILVNGLC 183
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
K GR +A+ +L+ + R ++ P +T N V+ LC G++ +
Sbjct: 184 KAGRVGDALRVLDG----------------MSRQDLDIRPDVVTLNTVVDGLCKSGRVQE 227
Query: 195 ALLLL--FLMYEHGKIPSRTSHDMLI 218
AL + + HG P+ +++ LI
Sbjct: 228 ALAFVEQRMSSVHGCPPNTVTYNCLI 253
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 102 GRVEEAYEMLMNVKND--GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GRV+EA + + G P+ TY ++D FC+VG + A EL+ + GV QN+V
Sbjct: 223 GRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIV 282
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
TL N ++ LC G+ AL
Sbjct: 283 TL------------------NTIVGGLCRAGRTGAAL 301
>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
Length = 734
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
FFS + G +++A ++ ++ GL P+V Y A++D CK+GR ++A N+ I G
Sbjct: 315 FFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEG 374
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
VT N+V L+ + L+ G P + FN +I LC VG++ +
Sbjct: 375 VTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGR 434
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
L+ LM G P S+ LI
Sbjct: 435 RLIDLMEHVGVRPDAFSYTPLI 456
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 37/183 (20%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF--------------FSNHLM----- 100
FN + +G ++ FN L+ L +++ + A + F N L+
Sbjct: 367 FNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCN 426
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRV E ++ +++ G++PD ++YT ++ G+C GR++EA ++ + + G++
Sbjct: 427 VGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLS----- 481
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +T+N ++ C +I A L M G P +++ ++
Sbjct: 482 -------------PTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHG 528
Query: 221 LDQ 223
L Q
Sbjct: 529 LFQ 531
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 49/182 (26%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC-------------- 134
DT +L +G+ +E +ML + GLKPD YTY ++++ C
Sbjct: 243 DTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVE 302
Query: 135 ------------------KVGRSNEAMELLNEAIERGVTQNVVTLIQLL----------- 165
K G ++AM++ N+ + G++ NVV L+
Sbjct: 303 NGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDD 362
Query: 166 ------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
Q + G P + FN+++ LC V K +A L++ M + G P+ + LI
Sbjct: 363 AEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLIC 422
Query: 220 KL 221
L
Sbjct: 423 NL 424
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 33/189 (17%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
AS + + +F + + G V +N +L L R EA E
Sbjct: 497 ASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL----------------FQTKRFSEAKE 540
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
+ +N+ N G K D+YTY I++G CK +EA ++ +G+ N++T ++ L
Sbjct: 541 LYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALL 600
Query: 170 MGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
G +P +T+ V + L G + + L M ++G P+
Sbjct: 601 KGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQ 660
Query: 213 SHDMLIKKL 221
+ L+++L
Sbjct: 661 MLNALVRRL 669
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 26/138 (18%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+K F N R EEA E+L + ND P+V TYT ++DG CK + A + +
Sbjct: 176 LKGFCNE---NRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQ 232
Query: 149 AIERGVTQNVVT----------------LIQLLQRLEM-GHIPRTITFNNVIQALCGVGK 191
I+ GV N T ++Q+L+++ G P T+ +++ LC + +
Sbjct: 233 MIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSE 292
Query: 192 IHKALLLLFLMYEHGKIP 209
+H L LM E+G P
Sbjct: 293 MHS---FLDLMVENGLSP 307
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 74/192 (38%), Gaps = 41/192 (21%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDF--NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
LK F I K G W V+D N LL L D RV EA ++
Sbjct: 114 LKHSFATFGLILKTG--WRVNDIVINQLLKGLC-----DGK-----------RVGEAMDV 155
Query: 111 LMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE---RGVTQNVVTLI---- 162
L+ + G PD +Y+ ++ GFC R+ EA+ELL R NVVT
Sbjct: 156 LLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVID 215
Query: 163 -----QLLQRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
QL R E G P T+N +I +GK + + +L M G P
Sbjct: 216 GLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKP 275
Query: 210 SRTSHDMLIKKL 221
++ L+ L
Sbjct: 276 DCYTYGSLLNYL 287
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
+ P+ TY+ ++ C++GR + ++ G N + + QLL+ L
Sbjct: 94 VAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAM 153
Query: 169 --------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY-EHGK 207
E+G P T++++ +++ C + +AL LL +M +HG+
Sbjct: 154 DVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGR 201
>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
Length = 604
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 26/175 (14%)
Query: 76 NDLLMALVMLNEQDT------AVKFF---SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
N++ MA+ + +E+ + A+ +F S GR+E+A M ++K G K D Y
Sbjct: 332 NNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAY 391
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLE 169
++ GFC+ R +EA ELL E E G+ +V T LL + ++
Sbjct: 392 NILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMID 451
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G P ITF ++ C VGKI +AL +L M E G P+ ++ LI L ++
Sbjct: 452 DGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKR 506
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 34/169 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E ++ +K+ G V +N LL S G E+L
Sbjct: 404 LHEAYELLQEMKEVGIRPDVCTYNTLL----------------SGSCKAGDFAAVDELLG 447
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+ +DG +P V T+ ++ G+CKVG+ +EA+ +L E G+
Sbjct: 448 KMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIH----------------- 490
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P + +N +I LC G + A+ L M E + T+ + L+K L
Sbjct: 491 -PNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGL 538
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------ 154
VG + AYE++ ++N+G+ ++ T I+ G C+ GR+ A+E E +R V
Sbjct: 259 VGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFRE--KRTVWPEGKG 316
Query: 155 --------------TQNVVTLIQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
T NV ++L +++ GH P I + +I L G++ A +
Sbjct: 317 NAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMA 376
Query: 200 FLMYEHGKIPSRTSHDMLI 218
M E G ++++LI
Sbjct: 377 SSMKEAGFKLDTKAYNILI 395
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDF---NDLLMALVMLNEQDTAVKFFS 96
+A + ++K ++ + +N++ + DF ++LL ++ Q + + F +
Sbjct: 406 EAYELLQEMKEVGIRPDVCTYNTLLSG--SCKAGDFAAVDELLGKMIDDGCQPSVITFGT 463
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ VG+++EA +L ++ G+ P+ Y ++D CK G + A+EL +E E+
Sbjct: 464 LVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKS 523
Query: 154 VTQNVVTLIQLLQRLEMGHIP 174
V NV T LL+ L ++P
Sbjct: 524 VPANVTTFNALLKGLRDKNMP 544
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
++PDV TY +++G CK GR +A+ +L+ + R ++ P +T
Sbjct: 168 VRPDVVTYGILVNGLCKAGRVGDALRVLDG----------------MSRQDLDIRPDVVT 211
Query: 179 FNNVIQALCGVGKIHKALLLL--FLMYEHGKIPSRTSHDMLI 218
N V+ LC G++ +AL + + HG P+ +++ LI
Sbjct: 212 LNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLI 253
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 102 GRVEEAYEMLMNVKND--GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GRV+EA + + G P+ TY ++D FC+VG + A EL+ + GV QN+V
Sbjct: 223 GRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIV 282
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
TL N ++ LC G+ AL
Sbjct: 283 TL------------------NTIVGGLCRAGRTGAAL 301
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+ I K G +V FN L+ S G VEE + + ++++G
Sbjct: 270 VFDEIPKRGLRPTVVSFNTLI----------------SGCCKSGDVEEGFRLKGVMESEG 313
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------------ 166
+ PDV+T++A+++G CK GR +E L +E RG+ N VT L+
Sbjct: 314 VCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLAL 373
Query: 167 -----RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L G P +T+N +I LC VG + +A L+ M G P + + LI
Sbjct: 374 KNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLI 430
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 28/192 (14%)
Query: 31 DLKENPRSLQAQRFVDKIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLN 86
DLKE A+R V+++ AS LK F ++ KDG S + ++ +
Sbjct: 403 DLKE------ARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIEL 456
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+ S GRV +A ML ++ + G KPD TYT ++D FCK G +LL
Sbjct: 457 DDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLL 516
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
E G H+P +T+N ++ LC G++ A +LL M G
Sbjct: 517 KEMQSDG------------------HVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVG 558
Query: 207 KIPSRTSHDMLI 218
P+ ++++L+
Sbjct: 559 VAPNDITYNILL 570
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG ++EA ++ + GLKPD T+T ++DG CK G A+E+ +E G+ + V
Sbjct: 401 VGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVA 460
Query: 161 LIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L G P T+ VI C G + LL M
Sbjct: 461 FTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQ 520
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G +P +++ L+ L +Q
Sbjct: 521 SDGHVPGVVTYNALMNGLCKQ 541
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E ++ + + V + G P +Y + +M GFCK G A + +E +RG+ VV+
Sbjct: 229 IERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNT 288
Query: 164 LLQ------------RLEM-----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ RL+ G P TF+ +I LC G++ + LL M G
Sbjct: 289 LISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRG 348
Query: 207 KIPSRTSHDMLI 218
+P+ + LI
Sbjct: 349 LVPNGVTFTTLI 360
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 22/150 (14%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G V A + + GL+P V ++ ++ G CK G E L
Sbjct: 249 YFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGV 308
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
GV +V T L+ L EM G +P +TF +I C GK
Sbjct: 309 MESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGK 368
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ AL +M G P +++ LI L
Sbjct: 369 VDLALKNFQMMLAQGVRPDLVTYNALINGL 398
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ R++EAY + K+ G++ +V Y++++DGF KVGR +EA +L E +++G+T NV T
Sbjct: 380 IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT 439
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LL L EM P T T++ +I LC V K +KA + M
Sbjct: 440 WNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQ 499
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ G +P+ ++ +I L
Sbjct: 500 KQGLVPNVVTYTTMISGL 517
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA +E +IF+++K+ G +N ++ G+V +AY
Sbjct: 309 KAGQARETSNIFHAMKQQGFALDARAYNAVV----------------DGFCKSGKVHKAY 352
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
E+L +K ++P V TY AI+DG K+ R +EA L EA +G+ NVV L+
Sbjct: 353 EILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGF 412
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ ++ G P T+N+++ AL +I++AL+ M E P+
Sbjct: 413 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNT 472
Query: 212 TSHDMLIKKL 221
++ +LI L
Sbjct: 473 YTYSILINGL 482
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR++EAY +L + GL P+VYT+ +++D K NEA+ E N T
Sbjct: 415 VGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYT 474
Query: 161 ---LIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI L R++ G +P +T+ +I L VG I A L
Sbjct: 475 YSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 534
Query: 204 EHGKIPSRTSHDMLIKKL 221
+G IP S + LI+ +
Sbjct: 535 ANGGIPDAASFNALIEGM 552
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 37/211 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFN---DLLM-------ALVMLNEQDTAVKF---F 95
K + E + +F +KKD S S +N D+L A +L+E + A F
Sbjct: 100 KKRKVDEALSLFEVMKKDAEPNS-STYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLL 158
Query: 96 SNHLMVGRV------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ ++MV R+ EEAY++ + G PD TY +++DG K G+ +EA L +
Sbjct: 159 TVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 218
Query: 150 IERGVTQNVVTLIQLLQ------RLEMGH-----------IPRTITFNNVIQALCGVGKI 192
++ G N V L++ R E GH P N + + G++
Sbjct: 219 LDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEV 278
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
K ++ + +G +P S+ +LI L +
Sbjct: 279 EKGRMIFEDIRSYGFLPDVRSYSILIHGLTK 309
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 18/132 (13%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-AIERGV----TQNVVTL 161
A++ +K GLKPD +YT+++ CK GR EA EL + ER V N + +
Sbjct: 2 AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61
Query: 162 -----------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+LL+RL E G IP ++FN+++ L K+ +AL L +M + + P
Sbjct: 62 GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE-P 120
Query: 210 SRTSHDMLIKKL 221
+ ++++++I L
Sbjct: 121 NSSTYNIIIDML 132
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 27/146 (18%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF----- 95
A RF D K L ER+ ++ G SV FN +L L + D A+ F
Sbjct: 66 AGRFEDAYK---LLERL------RERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK 116
Query: 96 ------SNHLMV-------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
S + ++ GRVEEAY +L +++ L P++ T ++D CK + EA
Sbjct: 117 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEA 176
Query: 143 MELLNEAIERGVTQNVVTLIQLLQRL 168
++ A +RG + VT L+ L
Sbjct: 177 YKIFESASQRGCNPDCVTYCSLIDGL 202
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+ EA E+ ++ + P Y Y ++ G+ GR +A +LL ERG +VV+
Sbjct: 31 AGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVS 90
Query: 161 L----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L + ++ P + T+N +I LC G++ +A +L M
Sbjct: 91 FNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEH 150
Query: 205 HGKIPSRTSHDMLIKKL 221
P+ + ++++ +L
Sbjct: 151 ASLFPNLLTVNIMVDRL 167
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G VE+ + ++++ G PDV +Y+ ++ G K G++ E + + ++G +
Sbjct: 275 AGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR- 333
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+N V+ C GK+HKA +L M E P+ ++ ++
Sbjct: 334 -----------------AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDG 376
Query: 221 L 221
L
Sbjct: 377 L 377
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 46/190 (24%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K + E I + K G +V +N LL ALV E + A+ F
Sbjct: 414 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTY 473
Query: 97 ------NHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L V + +A+ +++ GL P+V TYT ++ G KVG
Sbjct: 474 TYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVG------------ 521
Query: 150 IERGVTQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
N+ L +R + G IP +FN +I+ + + +A Y+ G +
Sbjct: 522 -------NITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEA-------YQAGWL 567
Query: 209 PSRTSHDMLI 218
+ D LI
Sbjct: 568 DTTMRLDCLI 577
>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
Length = 629
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 26/175 (14%)
Query: 76 NDLLMALVMLNEQDT------AVKFF---SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
N++ MA+ + +E+ + A+ +F S GR+E+A M ++K G K D Y
Sbjct: 332 NNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDTKAY 391
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLE 169
++ GFC+ R +EA ELL E E G+ +V T LL + ++
Sbjct: 392 NILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMID 451
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G P ITF ++ C VGKI +AL +L M E G P+ ++ LI L ++
Sbjct: 452 DGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKR 506
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 34/169 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E ++ +K+ G V +N LL S G E+L
Sbjct: 404 LHEAYELLQEMKEVGIRPDVCTYNTLL----------------SGSCKAGDFAAVDELLG 447
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+ +DG +P V T+ ++ G+CKVG+ +EA+ +L E G+
Sbjct: 448 KMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIH----------------- 490
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P + +N +I LC G + A+ L M E + T+ + L+K L
Sbjct: 491 -PNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGL 538
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------ 154
VG + AYE++ ++N+G+ ++ T I+ G C+ GR+ A+E E +R V
Sbjct: 259 VGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFRE--KRTVWPEGKG 316
Query: 155 --------------TQNVVTLIQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
T NV ++L +++ GH P I + +I L G++ A +
Sbjct: 317 NAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMA 376
Query: 200 FLMYEHGKIPSRTSHDMLI 218
M E G ++++LI
Sbjct: 377 SSMKEAGFKLDTKAYNILI 395
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDF---NDLLMALVMLNEQDTAVKFFS 96
+A + ++K ++ + +N++ + DF ++LL ++ Q + + F +
Sbjct: 406 EAYELLQEMKEVGIRPDVCTYNTLLSG--SCKAGDFAAVDELLGKMIDDGCQPSVITFGT 463
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ VG+++EA +L ++ G+ P+ Y ++D CK G + A+EL +E E+
Sbjct: 464 LVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKS 523
Query: 154 VTQNVVTLIQLLQRLEMGHIP 174
V NV T LL+ L ++P
Sbjct: 524 VPANVTTFNALLKGLRDKNMP 544
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 102 GRVEEAYEMLMNVKND--GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GRV+EA + + G P+ TY ++D FC+VG + A EL+ + GV QN+V
Sbjct: 223 GRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIV 282
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
TL N ++ LC G+ AL
Sbjct: 283 TL------------------NTIVGGLCRAGRTGAAL 301
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
++PDV TY +++G CK GR +A+ +L+ + R ++ P +T
Sbjct: 168 VRPDVVTYGILVNGLCKAGRVGDALRVLDG----------------MSRQDLDIRPDVVT 211
Query: 179 FNNVIQALCGVGKIHKALLLL--FLMYEHGKIPSRTSHDMLI 218
N V+ LC G++ +AL + + HG P+ +++ LI
Sbjct: 212 LNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLI 253
>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
Length = 653
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 27/207 (13%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ-------DTAVK 93
A +D++ + LK + +N++ K + + + L+A + N+ + V
Sbjct: 314 AHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVD 373
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
FF + +V RV E E ++ G PDV TYT +++GFCK G +EA+ LL G
Sbjct: 374 FFCQNGLVYRVIELLEQMLE---HGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACG 430
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
N ++ +L Q +E G P +TFN VI LC G + +A+
Sbjct: 431 CRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAI 490
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
LL M +G P S+ +I L +
Sbjct: 491 ELLKQMLLNGCSPDLISYSTVIDGLGK 517
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + F G VE+A E+L + +G PD+ +Y+ ++DG K G+++EA+ELLN
Sbjct: 474 NTVINFLCKK---GLVEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNV 530
Query: 149 AIERGVTQNVVTLIQLLQRL-EMGHIPRTIT----------------FNNVIQALCGVGK 191
+ +G++ N + + L + G I R I +N VI +LC G
Sbjct: 531 MVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGG 590
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+A+ L M G +P+ +++ +LI+ L +
Sbjct: 591 TDRAIEFLAYMVSSGCMPNESTYTILIRGLASE 623
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 66/172 (38%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G E +++L + + G PD+ Y ++DG CK G A E+L+ G+ NVV
Sbjct: 274 GLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCY 333
Query: 161 --------------------------------------------------LIQLL-QRLE 169
+I+LL Q LE
Sbjct: 334 NTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLE 393
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P IT+ VI C G I +A++LL M G P+ S+ +++K L
Sbjct: 394 HGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGL 445
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G V+EA +L ++ G PDV +Y A++ G C R +L+ E + G NVVT
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT 262
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ Q ++ G P + V+ +C G + A +L M
Sbjct: 263 FNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMP 322
Query: 204 EHGKIPSRTSHDMLIKKL 221
+G P+ ++ ++K L
Sbjct: 323 SYGLKPNVVCYNTVLKGL 340
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 33/156 (21%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G + V +N +L L M GRV++ E ++ V G P+V T+
Sbjct: 220 GCDPDVVSYNAVLKGLCMAKRW-------------GRVQDLMEEMVRV---GCPPNVVTF 263
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------RLEMGH-------- 172
++ C+ G ++L + ++ G T ++ +L LE+ H
Sbjct: 264 NTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPS 323
Query: 173 ---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
P + +N V++ LC + +A LL M+++
Sbjct: 324 YGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDN 359
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + G +E+A+ + + GL P+V TYTA+ DG CK+G+ + A ELL+E
Sbjct: 152 TYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEM 211
Query: 150 IERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
+G+ N+ T ++L++ +E+ G P TITF ++ A C G++
Sbjct: 212 CGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEM 271
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
KA LL M + G P+ + ++L+
Sbjct: 272 VKAHELLREMLDRGLQPTVITFNVLM 297
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G++ EA ++ + + G++PD TYT ++DG+CK G +A L N+ ++ G+T NVVT
Sbjct: 128 CGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVT 187
Query: 161 LIQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMY 203
L L ++G + T+N+++ LC G I +A+ L+ M
Sbjct: 188 YTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEME 247
Query: 204 EHGKIPSRTSHDMLI 218
G P + L+
Sbjct: 248 VAGMYPDTITFTTLM 262
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V++A +L + N G+ PD YT ++DGFCK+G A +L +E +E+
Sbjct: 59 GKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDE-MEK--------- 108
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
QR+ +P I + VI LC GK+ +A + M+ G P ++ LI
Sbjct: 109 ----QRI----VPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLI 157
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G ++ AY++ ++ + PD YTA++ G C+ G+ EA ++ N+ RGV + VT
Sbjct: 93 LGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVT 152
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ Q ++ G P +T+ + LC +G++ A LL M
Sbjct: 153 YTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMC 212
Query: 204 EHGKIPSRTSHDMLIKKL 221
G + +++ L+ L
Sbjct: 213 GKGLQLNICTYNSLVNGL 230
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ G + +A+E+L + + GL+P V T+ +M+GFC G + LL +E+G+
Sbjct: 265 YCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGI--- 321
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+P T T+N++++ C + + M G +P ++++L
Sbjct: 322 ---------------MPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNIL 366
Query: 218 IK 219
IK
Sbjct: 367 IK 368
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR--- 167
+K G PDV +Y+ +++G+C G + ++L+ E +G+ N+ T +I LL +
Sbjct: 1 MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60
Query: 168 -----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
+ G +P T+ + +I C +G I A L M + +P ++
Sbjct: 61 VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120
Query: 217 LIKKL 221
+I L
Sbjct: 121 VICGL 125
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 36/212 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K +K+ ++IF ++ + G +V + L+ AL + K F
Sbjct: 226 KEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLV 285
Query: 96 ------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++H G ++ A+E++ ++ + PD TY +M G C +GR +EA +L++E
Sbjct: 286 LYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 345
Query: 150 IERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKI 192
+RG+ ++VT L+ M G P +T+N +IQ LC G+
Sbjct: 346 TKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQG 405
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A ++ M E+G P +++ LI+ L +
Sbjct: 406 DDAENMVKEMVENGITPDDSTYISLIEGLTTE 437
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 102 GRVEEAYEMLMNVK-NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV+ A +++ ++ G+ P+ YTY ++ G+CKVGR +EA+++ +E + +G +
Sbjct: 86 GRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK---- 141
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P + +N +I C GK+ ALL M E G + ++++L+
Sbjct: 142 -------------PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHA 188
Query: 221 L 221
L
Sbjct: 189 L 189
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
M GR EAYE++ + GL PDV+TY +++G CK G +A+E+ RGV V
Sbjct: 190 FMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATV 249
Query: 159 VTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
VT L+ L G P + +N +I + G I +A ++
Sbjct: 250 VTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 309
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M + P +++ L++ L
Sbjct: 310 MEKKRIAPDDVTYNTLMRGL 329
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 17/142 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ H G V++A E+ N+ G++ V TYT+++ K G+ E +L +EA+ RG
Sbjct: 220 LINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRG 279
Query: 154 V----------------TQNVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKAL 196
+ + N+ +++ +E I P +T+N +++ LC +G++ +A
Sbjct: 280 IRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEAR 339
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
L+ M + G P +++ LI
Sbjct: 340 KLIDEMTKRGIQPDLVTYNTLI 361
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 18/155 (11%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELL 146
Q T S VGRV+EA ++ + G +KP+ Y A++ G+C G+ + A+
Sbjct: 108 QYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYR 167
Query: 147 NEAIERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGV 189
+ +ERGV V T L+ L M G P T+N +I C
Sbjct: 168 DRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE 227
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G + KAL + M G + ++ LI L ++
Sbjct: 228 GNVKKALEIFENMSRRGVRATVVTYTSLIYALSKK 262
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EAY +L + + G PDV TYT ++D C G+ N A EL + + VT
Sbjct: 276 GKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTY 335
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I LL + EM G++P +TF +I ALC VGK+ +A L +M +
Sbjct: 336 ITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKK 395
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ LI L
Sbjct: 396 QGVAPNLHTYNTLICGL 412
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 37/191 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L+E + FN +KK G +N L+ D A+K S N
Sbjct: 488 LEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINS 547
Query: 99 LM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L+ RV+EA++M +K L P V TY ++ G K GR EA L I
Sbjct: 548 LIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADD 607
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
P TI+FN ++ LC G++ AL +LF M E P +
Sbjct: 608 CP------------------PNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLT 649
Query: 214 HDMLIKKLDQQ 224
++ +I L ++
Sbjct: 650 YNTVIYGLIKE 660
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA E +K GL PD TY +M + K GR ++A++LL+E E G VV +
Sbjct: 486 GRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVII 545
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ QR+ EM P +T+N ++ L G++ +A L M
Sbjct: 546 NSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIA 605
Query: 205 HGKIPSRTSHDMLIKKL 221
P+ S + L+ L
Sbjct: 606 DDCPPNTISFNTLLDCL 622
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E + +KK G ++ +N L+ L+ LN R++EA
Sbjct: 379 KVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLN----------------RLDEAL 422
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV----TLIQL 164
E+ ++++ GL+ YTY +D + K G S +A++ + G+ N+V +L L
Sbjct: 423 ELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSL 482
Query: 165 LQ--RLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ RLE G P IT+N +++ G++ A+ LL M E+G P
Sbjct: 483 AEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEV 542
Query: 212 TSHDMLIKKL 221
+ LI L
Sbjct: 543 VIINSLIDTL 552
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-----VTQNVV 159
E A+ + +KN G PDV+TY +D K G+ E +L E + RG +T N+V
Sbjct: 805 EMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIV 864
Query: 160 TL-----------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
I L L G P T+ +I L +G++ +A M ++G
Sbjct: 865 IFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGC 924
Query: 208 IPSRTSHDMLIKKLDQQ 224
+P+ +++L+ +Q
Sbjct: 925 MPNCPLYNILMNGFGKQ 941
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 27/222 (12%)
Query: 4 SAANSPTPFSV-LLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNS 62
+A +P F+ L +D+ +S E DL E + K + + I IF
Sbjct: 816 NAGCTPDVFTYNLFLDALGKSGKIKELFDLYE-------EMLFRGCKPNTITHNIVIFGL 868
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122
+K + + ++ + DL M+ T L +GR+EEA + + + G P+
Sbjct: 869 VKSNSLDKAIDLYYDL-MSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPN 927
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182
Y +M+GF K G A EL ++ G+ P +++ +
Sbjct: 928 CPLYNILMNGFGKQGDVETACELFRRMVKEGIR------------------PDLKSYSIM 969
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ LC VGK+ AL + G P ++++I L +
Sbjct: 970 VDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRS 1011
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 98 HLMV--GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
HL++ G EA ++ + ++G+KP + TY+A+M K M LL E G+
Sbjct: 200 HLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLR 259
Query: 156 QNVVTL---IQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLL 198
N+ T I++L R + G P +T+ +I ALC GK++ A L
Sbjct: 260 PNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKEL 319
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQQ 224
M P R ++ L+ K
Sbjct: 320 FLKMKASSHKPDRVTYITLLDKFSDH 345
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 19/145 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
K ++ ++F + K+G + ++ ++ L M+ + D A+ +F
Sbjct: 940 KQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLV 999
Query: 98 --HLMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+LM+ RVEEA + ++N G+ PD+YTY A++ G EA ++ E
Sbjct: 1000 CYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEEL 1059
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIP 174
+G+ NV T L++ M P
Sbjct: 1060 QLKGLEPNVFTYNALIRGHSMSGNP 1084
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
++ ++E + +F+ ++ G + +N L++ N + G VEEA
Sbjct: 1010 RSQRVEEALSLFDEMRNRGITPDLYTYNALIL----------------NLGIAGMVEEAG 1053
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+M ++ GL+P+V+TY A++ G G + A + + + G N T QL
Sbjct: 1054 KMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + F + G + EA L ++ G + Y+Y ++ K G EA+++
Sbjct: 158 NTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRR 217
Query: 149 AIERGVT----------------QNVVTLIQLLQRLE-MGHIPRTITFNNVIQALCGVGK 191
+ G+ +++ T++ LLQ +E +G P TF I+ L GK
Sbjct: 218 MVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGK 277
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +A +L M + G P ++ +LI L
Sbjct: 278 IDEAYGILKRMDDAGCGPDVVTYTVLIDAL 307
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLL----------MALVMLNE------QDTAV 92
KA +E +IF+++K+ G +N ++ A +L E Q T
Sbjct: 441 KAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVA 500
Query: 93 KFFS---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ + + R++EAY + K+ G++ +V Y++++DGF KVGR +EA +L E
Sbjct: 501 TYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEM 560
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+++G+T NV T LL L EM P T T++ +I LC V K
Sbjct: 561 MKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKY 620
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+KA + M + G +P+ ++ +I L
Sbjct: 621 NKAFVFWQDMQKQGLVPNVVTYTTMISGL 649
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR++EAY +L + GL P+VYT+ +++D K NEA+ E N T
Sbjct: 547 VGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYT 606
Query: 161 ---LIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI L R++ G +P +T+ +I L VG I A L
Sbjct: 607 YSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 666
Query: 204 EHGKIPSRTSHDMLIKKL 221
+G IP S + LI+ +
Sbjct: 667 ANGGIPDAASFNALIEGM 684
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 18/137 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-AIERGV----TQ 156
G V+ A + +K GLKPD +YT+++ CK GR EA EL + ER V
Sbjct: 129 GNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAY 188
Query: 157 NVVTL-----------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
N + + +LL+RL E G IP ++FN+++ L K+ +AL L +M +
Sbjct: 189 NTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK 248
Query: 205 HGKIPSRTSHDMLIKKL 221
+ P+ ++++++I L
Sbjct: 249 DAE-PNSSTYNIIIDML 264
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 37/211 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFN---DLLM-------ALVMLNEQDTAVKF---F 95
K + E + +F +KKD S S +N D+L A +L+E + A F
Sbjct: 232 KKRKVDEALSLFEVMKKDAEPNS-STYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLL 290
Query: 96 SNHLMVGRV------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ ++MV R+ EEAY++ + G PD TY +++DG K G+ +EA L +
Sbjct: 291 TVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 350
Query: 150 IERGVTQNVVTLIQLLQ------RLEMGH-----------IPRTITFNNVIQALCGVGKI 192
++ G N V L++ R E GH P N + + G++
Sbjct: 351 LDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEV 410
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
K ++ + +G +P S+ +LI L +
Sbjct: 411 EKGRMIFEDIRSYGFLPDVRSYSILIHGLTK 441
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 27/146 (18%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF----- 95
A RF D K L ER+ ++ G SV FN +L L + D A+ F
Sbjct: 198 AGRFEDAYK---LLERL------RERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK 248
Query: 96 ------SNHLMV-------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
S + ++ GRVEEAY +L +++ L P++ T ++D CK + EA
Sbjct: 249 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEA 308
Query: 143 MELLNEAIERGVTQNVVTLIQLLQRL 168
++ A +RG + VT L+ L
Sbjct: 309 YKIFESASQRGCNPDCVTYCSLIDGL 334
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 32/226 (14%)
Query: 16 LVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFN----SIKKDGTNWS 71
LV + +R A++L L VD++K S L+ I ++N K G
Sbjct: 86 LVRALAREGQVADALAL------------VDEVKGSCLEPDIVLYNVCIDCFGKAGNVDM 133
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
F L A + + + GR+ EA E+ ++ + P Y Y ++
Sbjct: 134 ACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 193
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMGHIPR 175
G+ GR +A +LL ERG +VV+ + L + ++ P
Sbjct: 194 GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPN 253
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ T+N +I LC G++ +A +L M P+ + ++++ +L
Sbjct: 254 SSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRL 299
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V +A ++ VK L+PD+ Y +D F K G + A + +E +G+ + V+
Sbjct: 94 GQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSY 153
Query: 162 IQLLQRL----EMGH-------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L +G +P +N +I G+ A LL + E
Sbjct: 154 TSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRE 213
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G IPS S + ++ L ++
Sbjct: 214 RGCIPSVVSFNSILTCLGKK 233
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE+ + ++++ G PDV +Y+ ++ G K G++ E T N+
Sbjct: 408 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARE-------------TSNIFHA 454
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ + G +N V+ C GK+HKA +L M E P+ ++ ++ L
Sbjct: 455 MK-----QQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 509
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 39/158 (24%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K + E I + K G +V +N LL ALV E + A+ F
Sbjct: 546 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTY 605
Query: 97 ------NHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L V + +A+ +++ GL P+V TYT ++ G KVG
Sbjct: 606 TYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVG------------ 653
Query: 150 IERGVTQNVVTLIQLLQRLEM-GHIPRTITFNNVIQAL 186
N+ L +R + G IP +FN +I+ +
Sbjct: 654 -------NITDAYSLFERFKANGGIPDAASFNALIEGM 684
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 23/171 (13%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYT 125
V +F+ LV + E+ + + ++++ G VEEA+ ++++ GL PD +T
Sbjct: 235 VREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFT 294
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRL 168
Y A+++G CK RSNEA LL+E + NVV L+ + +
Sbjct: 295 YGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV 354
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G P IT++N+++ LC +G++ +A LLL M P +++++I+
Sbjct: 355 AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 405
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 23/199 (11%)
Query: 41 AQRFVDKIKASPLKER----IDIFNS-IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
A++ V ++ + LK ID+ S K D S F +L VML+ + +
Sbjct: 556 AEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGI-LI 614
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
N G +E A+ +L ++ +G PDV+ Y++++ G CK +A +L+E ++GV
Sbjct: 615 HNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVD 674
Query: 156 QNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
N+V L+ L G +P +T+ ++I C VG I A L
Sbjct: 675 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 734
Query: 199 LFLMYEHGKIPSRTSHDML 217
M G P + +L
Sbjct: 735 YNEMLATGITPDAFVYSVL 753
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 17/131 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A+ +L ++N G+ P+VYTY+ ++ G C+ G +A +LL E +G+ N L
Sbjct: 414 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 473
Query: 165 L-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ + ++ +P +N++I L VG++ ++ M E G
Sbjct: 474 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL 533
Query: 208 IPSRTSHDMLI 218
+P+ ++ LI
Sbjct: 534 LPNEFTYSGLI 544
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRVEE+ + ++ GL P+ +TY+ ++ G+ K G A +L+ ++ G+ N V
Sbjct: 515 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 574
Query: 161 LIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
I LL+ L+ G + + +I L G + A +L +
Sbjct: 575 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIE 634
Query: 204 EHGKIPSRTSHDMLIKKL 221
++G +P + LI L
Sbjct: 635 KNGSVPDVHVYSSLISGL 652
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 76/189 (40%), Gaps = 25/189 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
+A +D++ + I +N++ K +++ + FN +L ++ N T
Sbjct: 660 KAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCV-TYTSL 718
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
VG + A+ + + G+ PD + Y+ + G G +AM L+ E RG
Sbjct: 719 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 778
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+FNN++ C GK+ + L LL ++ G +P+ +
Sbjct: 779 AS-------------------ISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTI 819
Query: 215 DMLIKKLDQ 223
+ +I L +
Sbjct: 820 ENIISGLSE 828
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHIPRTITFNN 181
+ ++ ++DGFCK G+ E ++LL+ + RG+ N +T+ ++ L E G + T
Sbjct: 781 ISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFV 840
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+Q L M GKIP DM+
Sbjct: 841 ELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMI 876
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ----DT 90
P +L + + + +A L E IF +++ + + F+ L M M+N+ D
Sbjct: 814 PNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMD--MINQGKIPLDV 871
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+H G +++A ML +V P +Y AI+D C+ G+ +EA+ LL E
Sbjct: 872 VDDMIRDHCKEGNLDKAL-MLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEM 930
Query: 150 IERGVTQ-NVVTLIQLLQRLEMGHIPRTITFN 180
+RG Q +V L+ + HI + F
Sbjct: 931 DKRGNLQPTLVALLGIFWFRRHHHILNKVVFT 962
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLN 86
L ++ RS +A+ +D++ + LK + ++ ++ ++ + + +++ A V N
Sbjct: 302 LCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPN 361
Query: 87 E--QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
+ D V+ +G+++ A +L + D +PD TY I++G + +A
Sbjct: 362 KITYDNLVRGLCK---MGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFR 418
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+E G++ NV T++ +I LC G+ KA LL M
Sbjct: 419 LLSEMENAGISPNVY------------------TYSIMIHGLCQSGEPEKASDLLEEMTT 460
Query: 205 HGKIPSRTSHDMLI 218
G P+ + LI
Sbjct: 461 KGLKPNAFVYAPLI 474
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
S + G V A E+ + + PD+Y Y +++ G KVGR E+ + + ERG
Sbjct: 473 LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 532
Query: 154 VTQNVVTLIQLLQ 166
+ N T L+
Sbjct: 533 LLPNEFTYSGLIH 545
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 36/207 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALV-------------MLNEQDTAVKFFS--- 96
LK+ ID+FN + + V FN L+ A M+ +Q F +
Sbjct: 276 LKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNS 335
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ +V V +A + + G+ PD+ +Y+ +++GFCK+ + +EAM L E +
Sbjct: 336 LMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKN 395
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ +VVT L+ L + G P T+N+++ ALC ++ KA+
Sbjct: 396 IIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAI 455
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
LL + G P +++ +LIK L Q
Sbjct: 456 ALLTKFKDKGFQPDISTYSILIKGLCQ 482
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 17/161 (10%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F+D ++AL +Q + VG A ++L V + ++P+V Y I+D C
Sbjct: 177 FHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMC 236
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMGHI-PRTI 177
KV NEA +L +E + +G++ +VVT I L ++ + +I P
Sbjct: 237 KVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVY 296
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN ++ A C GK+ + + +M + G P+ +++ L+
Sbjct: 297 TFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLM 337
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A +L K+ G +PD+ TY+ ++ G C+ G+ +A ++ + + +G +V
Sbjct: 450 QVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVY--- 506
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +IQ C G ++AL LL M ++G IP +++++I L
Sbjct: 507 ---------------AYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSL 550
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G++E+A ++ ++ G DVY YT ++ GFC G NEA+ LL++ + G + T
Sbjct: 484 GKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKT 542
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV- 159
+G + A+ + + G PD T+T + G C G+ +A ++ + G + +
Sbjct: 133 LGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQIS 192
Query: 160 --TLIQ-------------LLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
TLI LLQR++ + P + +N +I ++C V +++A L M
Sbjct: 193 YGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMV 252
Query: 204 EHGKIPSRTSHDMLI 218
G P ++ LI
Sbjct: 253 SKGISPDVVTYSALI 267
>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EEA + + G +P++ Y+A++DG C+ G+ NEA E+LN I G NV T
Sbjct: 376 GKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTY 435
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ E G ++ +I LCGVG++ +A+++ M
Sbjct: 436 SSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLT 495
Query: 205 HGKIPSRTSHDMLIKKL 221
G P ++ +IK L
Sbjct: 496 IGIKPDTVAYSSMIKGL 512
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V+ A E+ + PD YTY +MDG CK R +EA+ LL+E G + + V
Sbjct: 200 LGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVI 259
Query: 161 LIQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L G P +T+N +I LC GK+ KA+ LL M
Sbjct: 260 YNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMV 319
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
IP+ ++ LI L +Q
Sbjct: 320 SSKCIPNDVTYGTLINGLVKQ 340
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRV+EA + + G+KPD Y++++ G C +G + A++L +E
Sbjct: 480 VGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHE------------ 527
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+L + E P +T+N ++ LC + +A+ LL M + G P + + +
Sbjct: 528 ---MLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNT 584
Query: 221 LDQQ 224
L ++
Sbjct: 585 LSEK 588
Score = 42.7 bits (99), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 37/164 (22%)
Query: 75 FNDLLMALVMLNEQDTAV---------KFFSNHLMVG----------RVEEAYEMLMNVK 115
+N L+ L + + D AV K N + G R + +L++++
Sbjct: 295 YNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISME 354
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
G + + + Y+ ++ G K G++ EAM L + E+G N+V
Sbjct: 355 ERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIV---------------- 398
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
++ VI LC GK ++A +L M G +P+ ++ L+K
Sbjct: 399 --VYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMK 440
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 36/186 (19%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSN--------------HLMVG-----RVEEAYEMLMNVK 115
FN ++ AL L D A++ F LM G R++EA +L ++
Sbjct: 190 FNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQ 249
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-------------- 161
++G P Y ++DG CK G + +L++ +G N VT
Sbjct: 250 SEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLD 309
Query: 162 --IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ LL+R+ IP +T+ +I L + LL M E G ++ + +LI
Sbjct: 310 KAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLI 369
Query: 219 KKLDQQ 224
L ++
Sbjct: 370 SGLFKE 375
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 21/136 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR EA + +K G +P+V+TYT ++DG CK + +EA ++L+E E+G+ +VVT
Sbjct: 313 GRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTY 372
Query: 161 ------------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
++ L++ G P T T+N +I LC K+HKA+ LL M
Sbjct: 373 NALIDGYCKEGMIDDAFEILDLMESNSCG--PNTRTYNELICGLCKKRKVHKAMALLNKM 430
Query: 203 YEHGKIPSRTSHDMLI 218
E PS +++ LI
Sbjct: 431 LERKLSPSLITYNSLI 446
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA ++ ++ D P V TYT ++ GR EA+ L NE E+G NV T
Sbjct: 278 GRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTY 337
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G IP +T+N +I C G I A +L LM
Sbjct: 338 TVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMES 397
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+ P+ +++ LI L ++
Sbjct: 398 NSCGPNTRTYNELICGLCKK 417
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 26/188 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE------QDTAVK 93
+A ++K+ L + +NS+ V+D L ++NE Q T
Sbjct: 422 KAMALLNKMLERKLSPSLITYNSLIHG--QCKVNDLESAYRLLSLMNENGLVPDQWTYSV 479
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F GRVEEA + +VK G+K + YTA++DG+CKVG+ + A LL +
Sbjct: 480 FIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA 539
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+P + T+N +I+ LC K+ +A L+ M G P+ +
Sbjct: 540 C------------------LPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVT 581
Query: 214 HDMLIKKL 221
+ +LI ++
Sbjct: 582 YTILIGEM 589
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 34/201 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P F+D + K ++E +F+S+K G + + L+
Sbjct: 472 PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI--------------- 516
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ VG+++ AY +L + ND P+ YTY +++G CK + EA L+ + + GV
Sbjct: 517 -DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGV 575
Query: 155 TQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALL 197
VVT L+ + +G+ P T+ + A G + +
Sbjct: 576 KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDD 635
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
++ M E G +P ++ +LI
Sbjct: 636 VIAKMNEEGILPDLVTYTVLI 656
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 88/189 (46%), Gaps = 44/189 (23%)
Query: 57 IDIFNSIKKDGT---NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113
+++F + DG ++ +N +LM+L S L++ ++ Y L+N
Sbjct: 141 LEVFRKMNADGEFKFKPTLRCYNTILMSL-------------SKFLLIDEMKTVYLELLN 187
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH- 172
+ + P++YT+ A+++G+CK+G EA ++ ++ G+ + T L+ +GH
Sbjct: 188 ---NQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLI----LGHC 240
Query: 173 --------------IPRT------ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
+P+ +++ N+I LC G+I++AL L M E P+
Sbjct: 241 RNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVR 300
Query: 213 SHDMLIKKL 221
++ +LI L
Sbjct: 301 TYTVLIYAL 309
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN 97
SL A+ +K + + I I +K + ++ FN ++ +L + T F
Sbjct: 565 SLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMV-SLGYQPDVCTYTAFLHA 623
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ G +EE +++ + +G+ PD+ TYT ++DG+ ++G ++ A + L ++ G +
Sbjct: 624 YFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPS 683
Query: 158 VVTLIQLLQRL 168
+ + L++ L
Sbjct: 684 LYIVSILIKNL 694
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
E A ++ + G DV Y A++ GFC+ R EA L++ ERG++
Sbjct: 730 EIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMS--------- 780
Query: 165 LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +N+++ C +G +A+ L+ M E+G +P S+ +L+ L
Sbjct: 781 ---------PSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGL 828
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
R+EEA ++ ++K G+ P Y +++D CK+G EA+ L++ +E G+
Sbjct: 763 RLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGL 814
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L+ G +V +A +L + L P + TY +++ G CKV A LL+ E
Sbjct: 408 NELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNE 467
Query: 152 RGVTQNVVTLIQLLQRL-------EMGHI----------PRTITFNNVIQALCGVGKIHK 194
G+ + T + L E G + + + +I C VGKI
Sbjct: 468 NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDV 527
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A LL M +P+ ++++LI+ L ++
Sbjct: 528 AYSLLERMLNDACLPNSYTYNVLIEGLCKE 557
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+ I K G SV FN L+ + ++ +G ++E + + + G
Sbjct: 158 VFDEITKWGLRPSVVSFNTLM----------------NGYIRLGDLDEGFRLKSAMHASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + N+A EL E I G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L G P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 ETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A+ I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +P
Sbjct: 410 DGHVPC 415
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+ +A +ML + + GLKPD TYT I++ FCK G +LL E G VVT
Sbjct: 360 GQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVPCVVT 418
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 22/160 (13%)
Query: 84 MLNEQDTAVKFFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
M NE +F N L+ +G V+ A E+L + +G PD++TY +++ G CK+G
Sbjct: 307 MSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGE 366
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNN 181
EA+E+LN+ I R + N VT L+ L G +P TFN+
Sbjct: 367 VEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 426
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+IQ LC A+ L M G P +++MLI L
Sbjct: 427 LIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSL 466
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 36/211 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K + ++E ++ + G V FN L+ L + N A++ F
Sbjct: 398 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEF 457
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ ++++ GR+EEA +L +++ G +V TY ++DGFCK R EA E+ +E
Sbjct: 458 TYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEM 517
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
+G+++NVVT L+ Q L G P T+N+++ C G I
Sbjct: 518 ELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDI 577
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
KA ++ M +G P ++ LI L +
Sbjct: 578 KKAADIVQTMTSNGCEPDSVTYGTLILGLSK 608
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EE + + N+G +PD +T+ ++++G C++G A+E+L+ ++ G ++ T
Sbjct: 295 GRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTY 354
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++G + P T+T+N +I LC ++ +A L ++
Sbjct: 355 NSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTS 414
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P + + LI+ L
Sbjct: 415 KGILPDVCTFNSLIQGL 431
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 34/180 (18%)
Query: 57 IDIFNS-IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
++I NS + G V+ FN L+ AL ++ + A M+ +
Sbjct: 195 VEIVNSRMVSRGIKPDVTTFNILIKALCRAHQ----------------IRPAILMMEEMG 238
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------RLE 169
+ GL PD T+T +M GF + G N A+ + + + G + VT+ L+ R+E
Sbjct: 239 SYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIE 298
Query: 170 -----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G P TFN+++ LC +G + AL +L +M + G P +++ LI
Sbjct: 299 EVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLI 358
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 35/174 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A +K+ DI ++ +G + L++ L GRVE A
Sbjct: 573 RAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSK----------------AGRVELAS 616
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+L V+ G+ TY ++ + R++EA+ L E +E+
Sbjct: 617 RLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEK---------------- 660
Query: 169 EMGHIPRTITFNNVIQALC-GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G P +T+ V + LC G G I +A+ L M + G +P +S ML + L
Sbjct: 661 --GDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGL 712
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 33/192 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF----------------- 95
L+E F I + G + ++ +N L+ L M + A + F
Sbjct: 120 LREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGT 179
Query: 96 --SNHLMVGRVEEAYEMLMNVKND------GLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
G + A ++ + ND KP+V TY I+DG CKVGR +EA +L
Sbjct: 180 LIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFE 239
Query: 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
E +G+ N + L+ G P +TFN +I LC GK+ +A LL +M E G
Sbjct: 240 EMKTQGMIPN--------EMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGI 291
Query: 208 IPSRTSHDMLIK 219
+P +++ LI+
Sbjct: 292 VPDLVTYNSLIE 303
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 36/201 (17%)
Query: 17 VDSPSRSPSAAESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDF 75
VD + S ++ + EN S F+D + K L E + +F +K + +
Sbjct: 381 VDDAKKLFSVMKAHGIAEN--SYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENL 438
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
N L+ L G++E A+E+ + N+G +P+V TYT ++ GFC+
Sbjct: 439 NCLIDGLCK----------------AGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCR 482
Query: 136 VGRSNEAMELLNEAIERGVTQNVVT----------------LIQLLQRLEMGHI-PRTIT 178
G+ ++A L+ + G T +++T ++QLL R+ + P IT
Sbjct: 483 EGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAIT 542
Query: 179 FNNVIQALCGVGKIHKALLLL 199
+ V+ L K + L LL
Sbjct: 543 CSIVVDMLSKDEKYQECLHLL 563
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA ++L + G+ PD+ TY ++++GFC VG N A EL +G +V++
Sbjct: 274 GKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 333
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P IT++++++ + GK+ A L +M
Sbjct: 334 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA 393
Query: 205 HGKIPSRTSHDMLIKKL 221
HG + ++ + + L
Sbjct: 394 HGIAENSYTYGIFLDGL 410
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 36/198 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR-------------- 103
++F S+ G V +N L+ + + A+K ++ L+VG+
Sbjct: 316 ELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGI 375
Query: 104 -----VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV---T 155
V++A ++ +K G+ + YTY +DG CK EAM+L E
Sbjct: 376 FLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEI 435
Query: 156 QNVVTLI-------------QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
+N+ LI +L ++L GH P +T+ +I C G++ KA +L+
Sbjct: 436 ENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQK 495
Query: 202 MYEHGKIPSRTSHDMLIK 219
M +G P +++ L++
Sbjct: 496 MEANGCTPDIITYNTLMR 513
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 23/133 (17%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V R+ E + + G P++ TY ++ G C R +EA L + G T +VVT
Sbjct: 117 VNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVT 176
Query: 161 LIQLLQ-----------------------RLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
L++ R E+ P IT+N ++ LC VG+ +A
Sbjct: 177 YGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQ 236
Query: 198 LLFLMYEHGKIPS 210
L M G IP+
Sbjct: 237 LFEEMKTQGMIPN 249
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 23/130 (17%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
NHL+ G + + + ++ GL D T +++ C V R E +
Sbjct: 73 NHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILR 132
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
RG + N+VT +N +I+ LC +I +A L M + G P
Sbjct: 133 RGYSPNIVT------------------YNTLIKGLCMEHRISEATRLFLRMQKLGCTPDV 174
Query: 212 TSHDMLIKKL 221
++ LIK L
Sbjct: 175 VTYGTLIKGL 184
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 36/205 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K LKE ++ + I K G +V FN L+ A D A S
Sbjct: 381 KKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVS 440
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+VG V+EA ++ ++ +GLK D+ TY ++D CK G + +A+ LL+E
Sbjct: 441 TYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEM 500
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
E G+ + +T L+ + G +T+N +I+ C GK+
Sbjct: 501 FEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKL 560
Query: 193 HKALLLLFLMYEHGKIPSRTSHDML 217
+A LL M E G IP+RT++D+L
Sbjct: 561 EEANRLLNEMLEKGLIPNRTTYDIL 585
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 34/160 (21%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F +++ G +V +N L+ L SN G+++EA + + G
Sbjct: 321 VFEEMQRQGLQPNVVTYNSLINGLC------------SN----GKLDEALGLQDKMSGMG 364
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
LKP+V TY A+++GFCK EA E+L++ +RG+ NV IT
Sbjct: 365 LKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV------------------IT 406
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
FN +I A G++ A LL +M + G P+ ++++ LI
Sbjct: 407 FNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ ++A +++ ++K G P V TY I+DG+CK G+ +A LL E + + + N +T
Sbjct: 242 VGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT 301
Query: 161 ---LIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI R E G P +T+N++I LC GK+ +AL L M
Sbjct: 302 FNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMS 361
Query: 204 EHGKIPSRTSHDMLI 218
G P+ +++ LI
Sbjct: 362 GMGLKPNVVTYNALI 376
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 21/118 (17%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G VE Y+ ++ + + +V T+ +++G CKVG+ +A +++ + G +
Sbjct: 210 IGVVESVYKEMIRRR---IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFS----- 261
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P IT+N +I C GK+ KA LL M P+ + ++LI
Sbjct: 262 -------------PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILI 306
>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
gi|224033903|gb|ACN36027.1| unknown [Zea mays]
Length = 655
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + F G VE+A E+L + +G PD+ +Y+ ++DG K G+++EA+ELLN
Sbjct: 476 NTLINFLCKK---GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNV 532
Query: 149 AIERGVTQNVVTLIQLLQRLEM-GHIPRTIT----------------FNNVIQALCGVGK 191
+ +G++ N + + L G I + I +N VI +LC G+
Sbjct: 533 MVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGE 592
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+A+ L M G +P+ +++ +LI+ L +
Sbjct: 593 TERAIEFLAYMVSSGCVPNESTYTILIRGLASE 625
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF + +V RV E E ++ G PDV TYT +++GFCK G +EA+ LL
Sbjct: 374 VDFFCQNGLVDRVIELLEQMLE---RGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTA 430
Query: 152 RGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHK 194
G N ++ +L Q ++ G ITFN +I LC G + +
Sbjct: 431 CGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQ 490
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL M +G P S+ +I L +
Sbjct: 491 AIELLKQMLVNGCSPDLISYSTVIDGLGK 519
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 65/172 (37%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G E +E+L + G PD+ Y I+DG CK G A E+LN G+ NVV
Sbjct: 276 GLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCY 335
Query: 161 --------------------------------------------------LIQLL-QRLE 169
+I+LL Q LE
Sbjct: 336 NTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLE 395
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P IT+ VI C G I +A++LL M G P+ S+ +++K L
Sbjct: 396 RGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGL 447
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA +L ++ + G +PDV +Y A++ G C R EL+ E + N+VT
Sbjct: 206 GSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTF 265
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q +E G P + +I +C G + A +L M
Sbjct: 266 NTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPS 325
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P+ ++ L+K L
Sbjct: 326 YGLKPNVVCYNTLLKGL 342
>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 789
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA +++++ + PDV TYTAI+DGFC++GR +EA ++L + + G N V+
Sbjct: 421 GRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSY 480
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L E P IT+ V+ GK+ +A L M E
Sbjct: 481 TALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVE 540
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G P+ ++LI+ L Q
Sbjct: 541 KGFFPTPVEINLLIQSLCQ 559
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + S H G ++A L ++ G D Y+AI+ FC+ GR +EA L+ +
Sbjct: 376 NTLIHMLSKH---GHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVID 432
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
R P +T+ ++ C +G+I +A +L MY+HG
Sbjct: 433 MYSRSCN------------------PDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCK 474
Query: 209 PSRTSHDMLIKKL 221
P+ S+ L+ L
Sbjct: 475 PNTVSYTALLNGL 487
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 20/121 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G +E A +L ++ PD TYTA+ D K GR +EA EL+ + + +G+
Sbjct: 595 IGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLD----- 649
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +TF +VI C G++ L LL M + + P RT ++ +I+K
Sbjct: 650 -------------PTPVTFRSVIHRYCQWGRVDDMLNLLDRMVK--RKPFRTIYNHVIEK 694
Query: 221 L 221
L
Sbjct: 695 L 695
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E+A L ++ G+KPD+ TY +++ G+C + R +A+EL+ +G
Sbjct: 281 KLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCP------- 333
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK-IPSRTSHDMLIKKL 221
P +++ V+ LC KI + L+ M + IP + +++ LI L
Sbjct: 334 -----------PDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHML 382
Query: 222 DQQ 224
+
Sbjct: 383 SKH 385
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 73/137 (53%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+++AY +L ++++G PDV TYT ++D C G+ ++A EL + ++VT
Sbjct: 276 GRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTY 335
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L+ + EM G+ P +T+ +++ALC GK+ +A +L +M
Sbjct: 336 ITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRV 395
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ +++ LI L
Sbjct: 396 RGIVPNLHTYNTLISGL 412
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 41/219 (18%)
Query: 28 ESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLL 79
E+L+L N P + F+D K ++ +D F +KK G S++ N L
Sbjct: 420 EALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASL 479
Query: 80 MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
+L + GR+ EA ++ ++ N GL PD TY +M + K G+
Sbjct: 480 YSLAEM----------------GRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQI 523
Query: 140 NEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNV 182
++A +LL E + G +++ + L+ L + G + P +T+N +
Sbjct: 524 DKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNIL 583
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I L GK+ KAL L M E G P+ + + L+ L
Sbjct: 584 ITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCL 622
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 88/238 (36%), Gaps = 45/238 (18%)
Query: 4 SAANSPTPFS-VLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKAS--------PLK 54
S +PT +S VL +D + ++LD E + + AS ++
Sbjct: 430 SLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIR 489
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL--------------- 99
E DIFN I G + +N ++ + D A K + L
Sbjct: 490 EAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLI 549
Query: 100 ----MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
GRV+EA++M +K+ L P V TY ++ G K G+ +A++L E G
Sbjct: 550 DTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCP 609
Query: 156 QNVVTLIQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKAL 196
N VT LL L M P +T+N +I L G+ A
Sbjct: 610 PNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAF 667
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 36/173 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA K+ D F K GT+ + +N L+ L+ N + A+K F
Sbjct: 767 KALDAKKLFDKFT--KSLGTHPTPESYNCLMDGLLGCNITEAALKLF------------- 811
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ +KN G P+++TY ++D K R +E EL NE + RG N+
Sbjct: 812 ---VEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNI---------- 858
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IT N +I AL I+KAL L + + P+ ++ LI L
Sbjct: 859 --------ITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGL 903
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S L + R++EA E+ N+++ G+ P Y+Y +D + K+G +A++ + +RG+
Sbjct: 410 SGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIM 469
Query: 156 QNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLL 198
++ L L EMG I P ++T+N +++ G+I KA L
Sbjct: 470 PSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKL 529
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L M G P + LI L
Sbjct: 530 LTEMLSEGCEPDIIVVNSLIDTL 552
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K+ + E +++N + G ++ N ++ ALV N + A+ +
Sbjct: 835 KSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPC 894
Query: 96 ------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
L GR EEA ++ + + KP+ Y +++GF K G N A +L
Sbjct: 895 TYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRM 954
Query: 150 IERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKI 192
I+ G+ ++ + L++ L M G P T+++N +I L ++
Sbjct: 955 IKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRL 1014
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+AL L M G P +++ LI
Sbjct: 1015 EEALSLFSEMKNRGISPELYTYNALI 1040
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G +EA ++ + ++GLKP + TY+A+M + + M+LL E G+ N+ T
Sbjct: 206 GFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTY 265
Query: 161 --LIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I++L R + G P +T+ +I ALC GK+ KA L M
Sbjct: 266 TICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRA 325
Query: 205 HGKIPSRTSHDMLIKKL 221
P ++ L+ K
Sbjct: 326 SSHKPDLVTYITLMSKF 342
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV---TQNV 158
G+V++A++ML ++ G+ P+++TY ++ G + R +EA+EL N GV +
Sbjct: 381 GKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSY 440
Query: 159 VTLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
V I +L + G +P N + +L +G+I +A + ++
Sbjct: 441 VLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHN 500
Query: 205 HGKIPSRTSHDMLIK 219
G P +++M++K
Sbjct: 501 CGLSPDSVTYNMMMK 515
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 33/154 (21%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + D+F + K+G + + L+ L M GRV++A
Sbjct: 940 KAGNVNIACDLFKRMIKEGIRPDLKSYTILVECL----------------FMTGRVDDAV 983
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LI--- 162
+K GL PD +Y +++G K R EA+ L +E RG++ + T LI
Sbjct: 984 HYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHF 1043
Query: 163 ----------QLLQRLE-MGHIPRTITFNNVIQA 185
++ + L+ MG P T+N +I+
Sbjct: 1044 GNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRG 1077
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 18/136 (13%)
Query: 31 DLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
DLK P + + + K L + +D+F S+K+ G + FN LL L + D
Sbjct: 570 DLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVD 629
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
A+K F M + N PDV TY I+ G K GR+ A ++
Sbjct: 630 LALKMFCR--------------MTIMN--CSPDVLTYNTIIYGLIKEGRAGYAFWFYHQ- 672
Query: 150 IERGVTQNVVTLIQLL 165
+++ ++ + VTL LL
Sbjct: 673 MKKFLSPDHVTLYTLL 688
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
DL+ V+ +T + F + G + +A L ++ G + Y+Y ++ +
Sbjct: 146 DLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQP 205
Query: 137 GRSNEAMELLNEAIERGVT----------------QNVVTLIQLLQRLE-MGHIPRTITF 179
G EA+++ I G+ ++ T++ LL+ +E +G P T+
Sbjct: 206 GFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTY 265
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I+ L G+I A +L M + G P ++ +LI L
Sbjct: 266 TICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDAL 307
>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 687
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA + + GL PD + YT I+ G+CKVG N+A + L E ++ G+T +V T
Sbjct: 370 GNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTY 429
Query: 162 I----------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LLQR+ + G IP +TFN +I G + KA LL +M
Sbjct: 430 TLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRS 489
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ LI L
Sbjct: 490 AGMSPDTVTYNALIHSL 506
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G EA ++L + GL PDV T+T ++DGF K G EA + + ER V +VVT
Sbjct: 510 GYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTC 569
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL + L+ G P + +NN+I C G ++ A L+ +M +
Sbjct: 570 SALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMID 629
Query: 205 HGKIPSRTSH 214
G +P+ T+H
Sbjct: 630 DGFLPNITTH 639
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 55/177 (31%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD---------------------- 131
F ++ G ++ +++LM +KN G+K DV YT ++D
Sbjct: 260 FIESYCAEGNIQSGWKILMEMKNYGIKADVIAYTIVIDALCKISCVKVATSLLFKMIHCG 319
Query: 132 -------------GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
G+CK GRS++A+ LLN V N+ + +L
Sbjct: 320 ISVDSVSVSSVIDGYCKKGRSDKAINLLNFF---NVRPNIFVYSSFMTKLCKDGNMLEAS 376
Query: 169 -------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
E G P + +I C VG I+KA L M + G PS T++ +LI
Sbjct: 377 KTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLI 433
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + R++EA + + + + GLKPD+ Y ++ GFC G N A L+
Sbjct: 568 TCSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMM 627
Query: 150 IERGVTQNVVT 160
I+ G N+ T
Sbjct: 628 IDDGFLPNITT 638
>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
Length = 655
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE+A E+L + +G PD+ +Y+ ++DG K G+++EA+ELLN + +G++ N +
Sbjct: 486 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 545
Query: 162 IQLLQRLEM-GHIPRTIT----------------FNNVIQALCGVGKIHKALLLLFLMYE 204
+ L G I + I +N VI +LC G+ +A+ L M
Sbjct: 546 SSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVS 605
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P+ +++ +LI+ L +
Sbjct: 606 SGCVPNESTYTILIRGLASE 625
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF + +V RV E E ++ G PDV TYT +++GFCK G +EA+ LL
Sbjct: 374 VDFFCQNGLVDRVIELLEQMLV---HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTA 430
Query: 152 RGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHK 194
G N ++ +L Q ++ G ITFN +I LC G + +
Sbjct: 431 CGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQ 490
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL M +G P S+ +I L +
Sbjct: 491 AIELLKQMLVNGCSPDLISYSTVIDGLGK 519
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G E +E+L + G PD+ Y I+DG CK G A E+LN G+ NVV
Sbjct: 276 GLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCY 335
Query: 161 --------------------------------------------------LIQLL-QRLE 169
+I+LL Q L
Sbjct: 336 NTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLV 395
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P IT+ VI C G I +A++LL M G P+ S+ +++K L
Sbjct: 396 HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGL 447
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++A +L ++ + G +PDV +Y A++ G C R EL+ E + N+VT
Sbjct: 206 GSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTF 265
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q E G P + +I +C G + A +L M
Sbjct: 266 NTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPS 325
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P+ ++ L+K L
Sbjct: 326 YGLKPNVVCYNTLLKGL 342
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 20/143 (13%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ + G++E A + V + P+ YTY ++ C GR +A+ +L+E RG
Sbjct: 98 AGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCA 154
Query: 156 -----QNVV-----------TLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLL 198
+V+ + +++L+ L G N V+ A+C G + KAL L
Sbjct: 155 PIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHL 214
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L + G P S++ ++K L
Sbjct: 215 LRDLPSFGCEPDVVSYNAVLKGL 237
>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
Length = 692
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE+A E+L + +G PD+ +Y+ ++DG K G+++EA+ELLN + +G++ N +
Sbjct: 523 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 582
Query: 162 IQLLQRLEM-GHIPRTIT----------------FNNVIQALCGVGKIHKALLLLFLMYE 204
+ L G I + I +N VI +LC G+ +A+ L M
Sbjct: 583 SSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVS 642
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P+ +++ +LI+ L +
Sbjct: 643 SGCVPNESTYTILIRGLASE 662
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF + +V RV E E ++ G PDV TYT +++GFCK G +EA+ LL
Sbjct: 411 VDFFCQNGLVDRVIELLEQMLE---HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTA 467
Query: 152 RGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHK 194
G N ++ +L Q ++ G ITFN +I LC G + +
Sbjct: 468 CGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQ 527
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL M +G P S+ +I L +
Sbjct: 528 AIELLKQMLVNGCSPDLISYSTVIDGLGK 556
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 65/172 (37%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G E +E+L + G PD+ Y I+DG CK G A E+LN G+ NVV
Sbjct: 313 GLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCY 372
Query: 161 --------------------------------------------------LIQLL-QRLE 169
+I+LL Q LE
Sbjct: 373 NTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLE 432
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P IT+ VI C G I +A++LL M G P+ S+ +++K L
Sbjct: 433 HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGL 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA +L ++ + G +PDV +Y A++ G C R EL+ E + N+VT
Sbjct: 243 GSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTF 302
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q +E G P + +I +C G + A +L M
Sbjct: 303 NTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPS 362
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P+ ++ L+K L
Sbjct: 363 YGLKPNVVCYNTLLKGL 379
>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 32/194 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
++ + +K I + +++ G +V N L+ AL NE+ VE A
Sbjct: 131 VEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCK-NEET--------------VESA 175
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ + + N G +PD YTY +++G CK+G+ ++A ELL+E E+G++ +VV+ L+
Sbjct: 176 FRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHG 235
Query: 168 L--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L EM G P T+++++ LC G +A+ LL +M +P+
Sbjct: 236 LCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPN 295
Query: 211 RTSHDMLIKKLDQQ 224
++ LI L ++
Sbjct: 296 MVTYSTLINGLCKE 309
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 43/197 (21%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K S KE +D +++ G + SV + L+ L N D A++
Sbjct: 206 KISQAKELLD---EMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLE------------ 250
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------- 161
EM++N G++P+V+TY+++MDG CK G S++AMELL + R + N+VT
Sbjct: 251 EMIIN----GIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGL 306
Query: 162 ---------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+++L R+ + G P + +I LC +A + M G P+R
Sbjct: 307 CKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNR 366
Query: 212 TS-------HDMLIKKL 221
S H+M+++ L
Sbjct: 367 ASWTFHVKMHNMVVQGL 383
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 24/177 (13%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVK---FFSNHLMVGRVE---EAYEMLMNVKNDGLKPDVY 124
SV+ F L + ++D V F + GRV +A + +++ +KP
Sbjct: 62 SVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQK 121
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------------E 169
+Y + D + A+ E E+G+ VV+L L++ L E
Sbjct: 122 SYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFRE 181
Query: 170 M---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
M G P + T+ +I LC +GKI +A LL M E G PS S+ LI L Q
Sbjct: 182 MPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQ 238
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 24/144 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EA E+L ++ GLKPD Y I+ G C EA ++E G++ N +
Sbjct: 310 GKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASW 369
Query: 162 -----------------------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALL 197
QL + I I TF+ +++ C G ++KA
Sbjct: 370 TFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAAR 429
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
+L M G IP ++L+ L
Sbjct: 430 ILEEMILDGCIPDEGMWNVLMCGL 453
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L ID+ + K G + +N LL + + A+++ N
Sbjct: 205 LGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNT 264
Query: 99 LMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L+ G+V+ A E+L + + G P + TY ++DG KVG++++A +LL+E +G
Sbjct: 265 LLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKG 324
Query: 154 VTQNVVTL----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKAL 196
+ +++T I+ LE +G P IT+N ++ LC K +A+
Sbjct: 325 LKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAI 384
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M + G P+ S+ +LI+ L
Sbjct: 385 DFLAYMVQRGCKPTEASYTILIEGL 409
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G+ +A ++ +++ G PDV TY ++ G C GR +A +LL + + RG + +VVT
Sbjct: 132 IGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVT 191
Query: 161 ---LIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI L R + G P ++++N ++ C K+ +A+ L M
Sbjct: 192 FNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMT 251
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 252 SRGCYPDIVTYNTLLTAL 269
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+ F ++GR A ++L + G P+ +Y ++ GFCK + A+E L +
Sbjct: 196 INFLCRKGLLGR---AIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTS 252
Query: 152 RGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHK 194
RG ++VT ++LL +L G P IT+N VI L VGK +
Sbjct: 253 RGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQ 312
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A LL M G P ++ L+ L ++
Sbjct: 313 AAKLLDEMRAKGLKPDIITYSSLVGGLSRE 342
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 16/127 (12%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
QA + +D+++A LK I ++S+ ++ + ++ F+DL +L + A+ +
Sbjct: 312 QAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDL----EVLGVKPNAITY 367
Query: 95 FSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N +M+G + + A + L + G KP +YT +++G G + EA+ELLNE
Sbjct: 368 --NAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNEL 425
Query: 150 IERGVTQ 156
RGV +
Sbjct: 426 CLRGVVK 432
>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 41/194 (21%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLM-----------------------VGRVEEA 107
+V FN +L ++ D A++F+ NH++ +G V+ A
Sbjct: 142 TVKSFNSVLNVIIQAGFHDRALEFY-NHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNA 200
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
E+ + PD YTY +MDG CKV R +EA+ LL+E G + T L+
Sbjct: 201 IELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLING 260
Query: 168 LE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L G +P +T+N +I LC GK+ KAL LL M +P+
Sbjct: 261 LCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPN 320
Query: 211 RTSHDMLIKKLDQQ 224
++ +I L +Q
Sbjct: 321 EVTYGTIINGLVKQ 334
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 23/163 (14%)
Query: 82 LVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
LV++ E+ V + ++V G+ EEA + + G K + Y+A++DG C+
Sbjct: 344 LVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCR 403
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQR-LEMGHIPRTI----------------T 178
+ +EAM++L+E ++G N T L++ E+G+ + I
Sbjct: 404 DRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVC 463
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ +I LC GK+ +A+++ M G P ++ +I+ L
Sbjct: 464 YSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGL 506
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA + + G +PDV Y++++ G C G EA++L NE +
Sbjct: 475 GKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEML----------- 523
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LE P IT+N + ALC I +A+ LL M + G P + ++ ++ L
Sbjct: 524 -----CLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRML 578
Query: 222 DQQ 224
++
Sbjct: 579 REK 581
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR + +L+ ++ G + Y Y+ ++ G K G+S EAM L E++++G N V
Sbjct: 335 GRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLY 394
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
L+ L + G P TF+++++ VG HKA+
Sbjct: 395 SALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAI 446
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 46/229 (20%)
Query: 34 ENPRSLQAQRFVDKIKASPLKERIDIFNSIK-KDGTNWSV-------SDFNDL---LMAL 82
EN ++ DKI +SP K S K D T +S+ SDFN L L +
Sbjct: 44 ENGSEPESSPISDKIFSSPPK-----MGSFKVGDSTFYSLIENYAYSSDFNSLEKVLNRM 98
Query: 83 VMLNEQDTAVKFF-------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
+ N + FF HL +E Y M KP V ++ ++++ +
Sbjct: 99 RLENRVFSEKSFFVMFKAYGKAHLPNKAIELFYRMSFEFY---CKPTVKSFNSVLNVIIQ 155
Query: 136 VGRSNEAMELLNEAI---ERGVTQNVVTL----------------IQLLQRLEMGH-IPR 175
G + A+E N + + + NV++ I+L + + + +P
Sbjct: 156 AGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPD 215
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
T+ ++ LC V +I +A+ LL M G PS + ++LI L ++
Sbjct: 216 AYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLINGLCKK 264
>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
macrostachya]
Length = 414
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+FN+I K G SV FN L+ + ++ +G ++E + + + G
Sbjct: 147 VFNAITKWGLRPSVVSFNTLM----------------NGYIRLGDLDEGFRLKSAMHASG 190
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E +++G+ N VT L+
Sbjct: 191 VQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAM 250
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 251 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 307
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 279 GDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAY 338
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G P T T+ +I C G + LL M
Sbjct: 339 TALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQR 398
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 399 DGHVPSVVTYNVLM 412
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M R++EA EM + + G PDV TY+ +++G+CK + M+L E +RGV +N V
Sbjct: 303 MYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTV 362
Query: 160 TLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L+Q + G P IT+N ++ LC GKI KAL++L M
Sbjct: 363 TYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADM 422
Query: 203 YEHGKIPSRTSHDMLIKKL 221
++G +++++I+ +
Sbjct: 423 QKNGMDADIVTYNIIIRGM 441
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 33/188 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K+ + +D+ N ++KDG V +N L+ L GR +A
Sbjct: 198 KSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCS----------------SGRWSDAT 241
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
M+ + + PDV+T+ A++D K GR +EA E E I R + ++VT L+ L
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGL 301
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
M G P +T++ +I C K+ + L M + G + +
Sbjct: 302 CMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNT 361
Query: 212 TSHDMLIK 219
++ +LI+
Sbjct: 362 VTYTILIQ 369
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 33/193 (17%)
Query: 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE 105
+ I+ L + +D+F + + S++DF+ LL A+ + + D + +
Sbjct: 55 NGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLW---------- 104
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
E +ML G+ ++ T +++ FC+ + + A+ L + I+ G ++VT LL
Sbjct: 105 EQMQML------GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLL 158
Query: 166 -----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
Q + MG+ P + +N +I LC ++ AL LL M + G
Sbjct: 159 NGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIG 218
Query: 209 PSRTSHDMLIKKL 221
P +++ LI L
Sbjct: 219 PDVVTYNSLISGL 231
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 21/144 (14%)
Query: 78 LLMALVMLNEQDTAVKFFS--NHLMVG-RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
L ++ L + + V F S N G RV +A M + G KP+V Y I+DG C
Sbjct: 138 FLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLC 197
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
K + + A++LLN + G+ P +T+N++I LC G+
Sbjct: 198 KSKQVDNALDLLNRMEKDGIG------------------PDVVTYNSLISGLCSSGRWSD 239
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A ++ M + P + + LI
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALI 263
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE ++ + G+ + TYT ++ G+C+ G+ N A E+ + GV N++T
Sbjct: 341 KVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYN 400
Query: 163 QLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL L + G I + +T+N +I+ +C G++ A + +
Sbjct: 401 VLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQ 460
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G +P ++ ++ L ++
Sbjct: 461 GLMPDIWTYTTMMLGLYKK 479
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V +A+++ ++ GL PD++TYT +M G K G EA L + E G+ N
Sbjct: 445 GEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++E+A +L +++ +G+ D+ TY I+ G CK G +A ++ +G+ ++ T
Sbjct: 410 GKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTY 469
Query: 162 IQLL 165
++
Sbjct: 470 TTMM 473
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K ++E + + I +G +++ +N LL L + GR+EEA
Sbjct: 271 KNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKM----------------GRLEEAI 314
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++L + ++G PDV TYT+++DG K RS EA +L E RG+ + V L++ L
Sbjct: 315 DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGL 374
Query: 169 -----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
G +P +T + +I L G+I A+ + M G P+
Sbjct: 375 LQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNE 434
Query: 212 TSHDMLIKKL 221
+ LI L
Sbjct: 435 VVYSALIHGL 444
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++EA ++ + +G P + TY A+++G CK+GR EA++LL + ++ G T +VVT
Sbjct: 274 KIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 333
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L EM G T+ + +I+ L GKI +A + M H
Sbjct: 334 SLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSH 393
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G +P + +I L +
Sbjct: 394 GCVPDVVTLSTMIDGLSK 411
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+ A + +++ GL P+ Y+A++ G CK + + A+E+L + + T
Sbjct: 412 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCT----- 466
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P TIT+N +I LC G + A M E G P ++++LI
Sbjct: 467 -------------PDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 513
Query: 221 L 221
L
Sbjct: 514 L 514
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 28/176 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + + IF S++ G + ++ L+ L + D A+
Sbjct: 411 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL---------------- 454
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
EML +K PD TY ++DG CK G A +E +E G +V T L+ L
Sbjct: 455 EMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGL 514
Query: 169 -EMGHI-----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
+ G+ +++++ LC GK+ +L M G S+T
Sbjct: 515 CKAGNTDAACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQT 570
>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Vitis vinifera]
Length = 641
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 36/177 (20%)
Query: 66 DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------------MVGRVEE 106
DG +S+ +N LL LV N+ D AV FF + +G+V++
Sbjct: 196 DGVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDK 255
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A+E+ ++ G PDV TY +++GFC+V + +LL E LL
Sbjct: 256 AFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKE---------------LLS 300
Query: 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+ ++ P +T+ ++I C +GK+ KA +L M G P+ + ++LI +
Sbjct: 301 KNDLS--PDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGK 355
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 37/176 (21%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD--------------------TAVKFFS 96
++FN ++ G + V +N L+ +NE D T S
Sbjct: 257 FELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIIS 316
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ +G++E+A + N+ + G+KP+ +T+ +++GF KVG A + E + G
Sbjct: 317 GYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPP 376
Query: 157 NVVTLIQLL----------QRLEMGH-------IPRTITFNNVIQALCGVGKIHKA 195
+++T L+ + L++ H P TF + ALC ++H+A
Sbjct: 377 DIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEA 432
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA +L ++ KPD TYT ++ G C GR +EA+ + N + G + +T+
Sbjct: 462 GNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITM 521
Query: 162 IQLLQRLEMGHIP 174
L+ L +P
Sbjct: 522 TSLISCLLKAGMP 534
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 20/130 (15%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T H G+VE + ++ + L P+ YT+ + + CK R +EA
Sbjct: 380 TFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEA------- 432
Query: 150 IERGVTQNVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
RG L+ L+ HI + +N VI C G + +A ++L M E
Sbjct: 433 --RG----------FLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCK 480
Query: 209 PSRTSHDMLI 218
P + ++ +LI
Sbjct: 481 PDKITYTILI 490
>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
Length = 641
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
+ N I ++G + +F + ++ +N + F VG V++A +M ++
Sbjct: 137 VLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMP 196
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE------ 169
+PDVYTY +MDG CK R +EA+ LL+E G + VT L+ L
Sbjct: 197 VSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLA 256
Query: 170 -----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G P +T+N +I LC GK+ KA+ LL M +P+ ++ +I
Sbjct: 257 RVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTII 316
Query: 219 KKLDQQ 224
L +Q
Sbjct: 317 NGLVKQ 322
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ +EA E+L + N+ KP+ YTY+++M GF + G ++A+E+ + + TQN
Sbjct: 393 GKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQN---- 448
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ ++ +I LC GK+ +A+++ M G P ++ +I L
Sbjct: 449 --------------EVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGL 494
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+EA + + G KPDV Y ++++G G +A++L NE + +
Sbjct: 463 GKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQ--------- 513
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
E P +T+N ++ ALC I +A+ LL M + G P + + ++ L
Sbjct: 514 -------EPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTL 566
Query: 222 DQQ 224
++
Sbjct: 567 REK 569
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 36/208 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
KA + E + + + ++ DG S FN L+ L + K N + G
Sbjct: 215 CKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNE 274
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++E+A +L + + P+V TY I++G K GR+ + +L
Sbjct: 275 VTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLAL 334
Query: 149 AIERG--VTQNVVTLI--------------QLLQRLEMGHIP-RTITFNNVIQALCGVGK 191
ERG V + V + + QL + + + TI ++ VI LC GK
Sbjct: 335 MEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGK 394
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+AL +L M + P+ ++ L+K
Sbjct: 395 PDEALEVLSEMTNNRCKPNAYTYSSLMK 422
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 42/229 (18%)
Query: 16 LVDSPSRSPSAAESLDLKENPRSLQA--------QRFVDKI-KASPLKERIDIFNSIKKD 66
L+D + E L L E RS + +D KA +++ ++F+ + K+
Sbjct: 389 LIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKE 448
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G +V N L+ + GRV A + + G+K D TY
Sbjct: 449 GVAPNVVTVNTLVGGMCR----------------TGRVSSAVNFFVEAQRRGMKGDAVTY 492
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------E 169
TA+++ FC V +AMEL NE ++ G + + + L+ +
Sbjct: 493 TALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKK 552
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+G P T+ +N +I C K H+ +L M E G P +++ LI
Sbjct: 553 LGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLI 601
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 101 VGRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
VGR +E ++ +++ G PD TY ++DGFCK G + EL +E + GV NVV
Sbjct: 396 VGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVV 455
Query: 160 TLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T+ L+ + G +T+ +I A C V KA+ L M
Sbjct: 456 TVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEM 515
Query: 203 YEHGKIPSRTSHDMLIKKLDQ 223
+ G P + LI Q
Sbjct: 516 LKSGCSPDAIVYYTLISGFSQ 536
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 28/154 (18%)
Query: 76 NDLLMALVMLNEQDTAVKF--FSNHLM-VGRVEEAYEMLMNV---KNDG-----LKPDVY 124
N+L+ +V ++ Q V F NH+ RV++A E+L + K G ++PDV
Sbjct: 325 NELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVV 384
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQ 184
Y ++DG CKVGR E + L+ ER R + G P TIT+N +I
Sbjct: 385 IYNTLIDGLCKVGRQQEGLGLM----ER-------------MRSQKGCAPDTITYNCLID 427
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
C G+I K L M + G P+ + + L+
Sbjct: 428 GFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLV 461
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A +++ + G+ P V TY A+++ +C G NEAME+ +
Sbjct: 608 GDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKD------------- 654
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ ++ P T+ +N +I +LC K+ A+ L+ M G P+ T+++ + K L
Sbjct: 655 MKAASKVP----PNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGL 710
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 36/192 (18%)
Query: 32 LKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90
L+ +P ++ +D + K + E +F+ + G +V +N L+ L +
Sbjct: 354 LRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD---- 409
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
++E A+ M+ ++ + G+ PDV TY+ ++D FCK R +EA+ELL+
Sbjct: 410 ------------KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA 457
Query: 151 ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM-YEHGKIP 209
RG T NVV TFN++I LC + +A + M +HG +P
Sbjct: 458 SRGCTPNVV------------------TFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVP 499
Query: 210 SRTSHDMLIKKL 221
+ ++ LI L
Sbjct: 500 DKITYCTLIDGL 511
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 41/215 (19%)
Query: 48 IKASPLKERIDIF-NSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------- 96
+A ++IF + +DG ++ +N ++ L NE ++ F
Sbjct: 191 CRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPD 250
Query: 97 ----NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
N L+ G +EEA + ++ + P+V TY+ +++G CKVGR +EA EL+
Sbjct: 251 VVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQ 310
Query: 148 EAIERG--VTQNVVTL----------------IQLLQRLEMGHI---PRTITFNNVIQAL 186
E + V N++T +L++ L G + P T+TF+ +I L
Sbjct: 311 EMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGL 370
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
C G+I +A + M G +P+ +++ L+ L
Sbjct: 371 CKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGL 405
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 43/210 (20%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSD---FNDLLMALVMLNEQDTA 91
P + F+D + K S + E ++ S++ DG+ D F+ L+ L + D A
Sbjct: 815 PNIITYNSFLDGLCKQSMMAEACELMRSLR-DGSLRVSPDTVTFSTLIDGLCKCGQTDEA 873
Query: 92 VKFFSNHLMVGRV-------------------EEAYEMLMNVKNDGLKPDVYTYTAIMDG 132
F + + G V E A+ M+ ++ + G+ PDV TY+ ++D
Sbjct: 874 CNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDA 933
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKI 192
FCK +EA+ELL+ RG T NVV TFN++I LC +
Sbjct: 934 FCKASHVDEALELLHGMASRGCTPNVV------------------TFNSIIDGLCKSDQS 975
Query: 193 HKALLLLFLM-YEHGKIPSRTSHDMLIKKL 221
+A + M +HG P + ++ LI L
Sbjct: 976 GEAFQMFDDMTLKHGLAPDKITYCTLIDGL 1005
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE A ++L + N G+ P+V TY A++ G CK GR EA + L E + G + +T
Sbjct: 616 GQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITY 675
Query: 162 ----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+QL+ L+ G P T+T+N ++ L G+ +A+ +L M
Sbjct: 676 GSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVG 735
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ LI L
Sbjct: 736 KGHHPDVVTYNTLIDSL 752
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 33/150 (22%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
V+D+N +L +L E A++ F + DG+ P + TY I++
Sbjct: 180 VADYNIVLQSLCRAGETARALEIFRGEM---------------ARDGVAPTIVTYNTIIN 224
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191
G CK MEL E +ER GH P +T+N +I +LC G
Sbjct: 225 GLCKSNELGAGMELFEELVER------------------GHHPDVVTYNTLIDSLCKAGD 266
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +A L M +P+ ++ +LI L
Sbjct: 267 LEEARRLHGDMSSRSCVPNVVTYSVLINGL 296
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
R+ QA+ +D + N + K G + ++ L ++ ++ T +
Sbjct: 516 RAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIA 575
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
G E+A + + L+PDV T+ A++DG CK G+ A ++L+ GV
Sbjct: 576 GACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 635
Query: 157 NVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLL 199
NVVT L+ L EM G +P +IT+ +++ ALC + AL L+
Sbjct: 636 NVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLV 695
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
+ G P ++++L+ L
Sbjct: 696 SELKSFGWDPDTVTYNILVDGL 717
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 35/209 (16%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
+P ++ VD + K+ ++ I + + G + V +N L+ +L + + A +
Sbjct: 704 DPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARR 763
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ M RV P+V TY+ +++G CKVGR +EA EL+ E + +
Sbjct: 764 LHGD--MSSRVSRC-----------CVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKS 810
Query: 154 --VTQNVVTL----------------IQLLQRLEMGHI---PRTITFNNVIQALCGVGKI 192
V N++T +L++ L G + P T+TF+ +I LC G+
Sbjct: 811 CDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQT 870
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A + M G +P+ ++++L+ L
Sbjct: 871 DEACNVFDDMIAGGYVPNVVTYNVLMNGL 899
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 30/219 (13%)
Query: 18 DSPSRSPSAAESL-DLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDF 75
D R+ + ES+ D P + VD KAS + E +++ + + G +V F
Sbjct: 409 DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTF 468
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
N ++ L + A + F + M +K+ GL PD TY ++DG +
Sbjct: 469 NSIIDGLCKSDRSGEAFQMFDD--------------MALKH-GLVPDKITYCTLIDGLFR 513
Query: 136 VGRSNEAMELLN----------EAIERGVTQ--NVVTLIQLLQR-LEMGHIPRTITFNNV 182
GR+ +A LL+ G+++ +V +Q+ R LE+ +P +TFN +
Sbjct: 514 TGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNIL 573
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I C G +A L M P + LI L
Sbjct: 574 IAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGL 612
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 29/217 (13%)
Query: 18 DSPSRSPSAAESL-DLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDF 75
D R+ + ES+ D P + VD KAS + E +++ + + G +V F
Sbjct: 903 DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTF 962
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
N ++ L ++ A + F + M +K+ GL PD TY ++DG +
Sbjct: 963 NSIIDGLCKSDQSGEAFQMFDD--------------MTLKH-GLAPDKITYCTLIDGLFR 1007
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQR-----------LEMGHIPRTITFNNVIQ 184
G + +A E+L +A+ T I L + LE+ +P +TFN +I
Sbjct: 1008 TGWAGQA-EVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIA 1066
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
C G +A L M P + LI L
Sbjct: 1067 GACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGL 1103
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 33/185 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
++ + + KDG SV + L+ A ++ GR+ EA E+ + +
Sbjct: 186 FEVMDELLKDGCKPSVITYTILIEATIL----------------EGRINEALELFDELVS 229
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------RLEM 170
GL+PD+YTY AI+ G CK G + A++ + RG +VV+ LL+ R E
Sbjct: 230 RGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWED 289
Query: 171 GHI-----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G P +T + +I + C G++ +A+ +L +M E G P S+D LI
Sbjct: 290 GERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLIS 349
Query: 220 KLDQQ 224
++
Sbjct: 350 AFCKE 354
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA +L +K GL PD Y+Y ++ FCK GR + A+E L + + G ++V
Sbjct: 320 GRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNY 379
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L L E+G P +N + AL G KAL ++ M
Sbjct: 380 NTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIR 439
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ LI L
Sbjct: 440 KGIDPDEITYNSLISCL 456
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++E A+E++ + DG KP V TYT +++ GR NEA+EL +E + RG+
Sbjct: 180 GKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLR------ 233
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+N +I+ +C G +AL + + G P S+++L++
Sbjct: 234 ------------PDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSF 281
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 33/182 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I+ + DG + ++N +L L D A+ F +++E
Sbjct: 361 IEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFE------KLDEV--------- 405
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--------------- 161
G P V Y + G +A+E+++E I +G+ + +T
Sbjct: 406 -GCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDE 464
Query: 162 -IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
I LL +E P I+FN V+ +C ++ + + LL M E G +P+ TS+ +LI+
Sbjct: 465 AIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIE 524
Query: 220 KL 221
+
Sbjct: 525 GI 526
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----LIQLLQR--------- 167
PDVY+Y A++ GF K + + A ++ + RG + +VVT + L R
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188
Query: 168 ----LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
L+ G P IT+ +I+A G+I++AL L + G P +++ +I+ + +
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK 248
Query: 224 Q 224
+
Sbjct: 249 E 249
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
N +K + G+ E+ L +V + G KPDV T ++ GF +AM +
Sbjct: 60 NRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRV 119
Query: 146 LN-------------EAIERGVTQ--NVVTLIQLLQRLE-MGHIPRTITFNNVIQALCGV 189
+ A+ G ++ + + Q+ R+ G P +T+N +I +LC
Sbjct: 120 MEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSR 179
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
GK+ A ++ + + G PS ++ +LI+
Sbjct: 180 GKLELAFEVMDELLKDGCKPSVITYTILIE 209
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G +EEA E+L + +DG+ PD TYT+I+ + GR + E+ E + +G+T +VVT
Sbjct: 527 LGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVT 586
Query: 161 LIQLLQ------RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ RLE G +P IT+N++I LC V ++ +A M
Sbjct: 587 YTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMV 646
Query: 204 EHGKIPSRTSHDMLIKK 220
E G P++ S+ +LI +
Sbjct: 647 EKGIFPNKYSYTILINE 663
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F+++L + L+ A + L +G A+ + + G PD+ Y ++DG C
Sbjct: 467 FDEMLHEGLELDSYAYATRIVG-ELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLC 525
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTI 177
K+G EA ELL + + GV + VT ++ + L G P +
Sbjct: 526 KLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVV 585
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ +I G G++ +A + M E G +P+ +++ LI L
Sbjct: 586 TYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL 629
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T H GR+E A+ ++ G+ P+V TY ++++G CKV R ++A E
Sbjct: 586 TYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEM 645
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+E+G+ P ++ +I C +G +AL L M + G P
Sbjct: 646 VEKGI------------------FPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQP 687
Query: 210 SRTSHDMLIKKLDQ 223
+H L+K+L +
Sbjct: 688 DSCTHSALLKQLGK 701
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
G +E A ++ + + N+G+ PD+ TYT +++G CK+G + A E +E + G+
Sbjct: 423 GELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAY 482
Query: 155 TQNVVTLIQL--------LQR--LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+V ++L LQ L G P I +N V+ LC +G + +A LL M
Sbjct: 483 ATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVS 542
Query: 205 HGKIPSRTSHDMLI 218
G IP ++ +I
Sbjct: 543 DGVIPDYVTYTSII 556
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ +A E+ + G+KP + TY ++D +CK G+ + ++LL+E RG N VT
Sbjct: 215 MSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNV 274
Query: 164 LLQRLE-----------MGHIPRT------ITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L +G + +T T+N +I G + +AL L M G
Sbjct: 275 LINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKG 334
Query: 207 KIPSRTSHDMLIKKL 221
P+ +++ I L
Sbjct: 335 ASPTVATYNSFIYGL 349
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G + EA + + G P V TY + + G CK+GR ++AM+ L++ + + +VV
Sbjct: 318 GMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSY 377
Query: 160 -TLIQLLQRL-----------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI RL E+ I P +T+N ++ LC G++ A L M
Sbjct: 378 NTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMIN 437
Query: 205 HGKIPSRTSHDMLI 218
G P ++ +L+
Sbjct: 438 EGIAPDIVTYTILV 451
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 36/201 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMV- 101
+++ I K G + +N LL A + D A+ F N L+
Sbjct: 106 MEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTA 165
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V+ A ++L +K G P + +Y ++DG K G++ EA+ELL+E I +G+ +
Sbjct: 166 LCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPD 225
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
++T + L +MG P + +N ++ LC + H A+ L
Sbjct: 226 IITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFS 285
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M +G +P+ +++ +L++ L
Sbjct: 286 YMISNGCMPNESTYTILVEGL 306
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++L +++ G PD+ TY +++G C+ GR ++AME L G N V+ +L+ L
Sbjct: 2 KLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGL 61
Query: 169 --------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
EM H P +TFN +I LC G + A+ +L + ++G P+
Sbjct: 62 FTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNS 121
Query: 212 TSHDMLIKKLDQQ 224
S++ L+ +Q
Sbjct: 122 LSYNPLLHAFCKQ 134
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE A E+L + G P+ +Y ++ FCK + ++AM + + RG ++V+
Sbjct: 100 GLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSY 159
Query: 162 ----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I LL +L+ G P I++N VI L GK +AL LL M
Sbjct: 160 NTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMIS 219
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P ++ + L ++
Sbjct: 220 KGLQPDIITYTTIASGLCRE 239
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 37/184 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-------------- 102
+ + + ++ G + +N +L + D A++F N G
Sbjct: 1 MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60
Query: 103 -----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
R E+A +++ + + G P+V T+ ++ C+ G AME+L + + G T
Sbjct: 61 LFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCT-- 118
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
P ++++N ++ A C K+ KA+ + LM G P S++ L
Sbjct: 119 ----------------PNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTL 162
Query: 218 IKKL 221
+ L
Sbjct: 163 LTAL 166
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 24/147 (16%)
Query: 16 LVDSPSRSPSAAESLDLKEN--PRSLQAQRFVDKIKASPL------KERIDIFNSIKKDG 67
++D +++ E+L+L + + LQ AS L +E I F ++ G
Sbjct: 197 VIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMG 256
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+V +N +L+ L E A+ FS + ++G P+ TYT
Sbjct: 257 IRPTVVLYNAILLGLCKRRETHNAIDLFSYMI----------------SNGCMPNESTYT 300
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGV 154
+++G G EA +LL + RGV
Sbjct: 301 ILVEGLAYEGLVKEARDLLGQLCSRGV 327
>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 418
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV FN L+ + ++ +G ++E + + + G
Sbjct: 158 VFDAITKWGLKPSVVSFNTLM----------------NGYIKMGILDEGFRLKNAMHASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
+PDVYTY+ +++G CK + +EA EL +E +E+G+ N VT L+
Sbjct: 202 AQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L G P IT+N +I C G + + L+ M G P + ++ LI
Sbjct: 262 EIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLI 318
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++ +++ + GLKPD TYT ++DG CK G A E + IE + + V
Sbjct: 290 GDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P + T+ V+ C G ++ LL M
Sbjct: 350 TALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGHVPS 415
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKPD TYT +M+ FCK G N +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSVVT 418
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G +EEA E+L + +DG+ PD TYT+I+ + GR + E+ E + +G+T +VVT
Sbjct: 527 LGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVT 586
Query: 161 LIQLLQ------RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ RLE G +P IT+N++I LC V ++ +A M
Sbjct: 587 YTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMV 646
Query: 204 EHGKIPSRTSHDMLIKK 220
E G P++ S+ +LI +
Sbjct: 647 EKGIFPNKYSYTILINE 663
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F+++L + L+ A + L +G A+ + + G PD+ Y ++DG C
Sbjct: 467 FDEMLHEGLELDSYAYATRIV-GELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLC 525
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTI 177
K+G EA ELL + + GV + VT ++ + L G P +
Sbjct: 526 KLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVV 585
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ +I G G++ +A + M E G +P+ +++ LI L
Sbjct: 586 TYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL 629
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H GR+E A+ ++ G+ P+V TY ++++G CKV R ++A E +E+G+
Sbjct: 593 GHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGI-- 650
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P ++ +I C +G +AL L M + G P +H
Sbjct: 651 ----------------FPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSA 694
Query: 217 LIKKLDQ 223
L+K+L +
Sbjct: 695 LLKQLGK 701
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
G +E A ++ + + N+G+ PD+ TYT +++G CK+G + A E +E + G+
Sbjct: 423 GELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAY 482
Query: 155 TQNVVTLIQL--------LQR--LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+V ++L LQ L G P I +N V+ LC +G + +A LL M
Sbjct: 483 ATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVS 542
Query: 205 HGKIPSRTSHDMLI 218
G IP ++ +I
Sbjct: 543 DGVIPDYVTYTSII 556
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G + EA + + G P V TY + + G CK+GR ++AM+ L++ + + +VV
Sbjct: 318 GMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSY 377
Query: 160 -TLIQLLQRL-----------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI RL E+ I P +T+N ++ LC G++ A L M
Sbjct: 378 NTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMIN 437
Query: 205 HGKIPSRTSHDMLI 218
G P ++ +L+
Sbjct: 438 EGIAPDIVTYTILV 451
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ +A E+ + G+KP + TY ++D +CK G+ + ++LL+E RG N VT
Sbjct: 215 MSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNV 274
Query: 164 LLQRLE-----------MGHIPRT------ITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L +G + +T T+N +I G + +AL L M G
Sbjct: 275 LINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKG 334
Query: 207 KIPSRTSHDMLIKKL 221
P+ +++ I L
Sbjct: 335 ASPTVATYNSFIYGL 349
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 21/136 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR EA + +K G +P+V+TYT ++DG CK + +EA ++L+E E+G+ +VVT
Sbjct: 313 GRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTY 372
Query: 161 ------------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
++ L++ G P T T+N +I LC K+HKA+ LL M
Sbjct: 373 NALIDGYCKEGMIDDAFEILDLMESNSCG--PNTRTYNELICGLCKKRKVHKAMALLNKM 430
Query: 203 YEHGKIPSRTSHDMLI 218
E PS +++ LI
Sbjct: 431 LERKLSPSLITYNSLI 446
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA ++ ++ D P V TYT ++ GR EA+ L NE E+G NV T
Sbjct: 278 GRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTY 337
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G IP +T+N +I C G I A +L LM
Sbjct: 338 TVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMES 397
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+ P+ +++ LI L ++
Sbjct: 398 NSCGPNTRTYNELICGLCKK 417
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 26/188 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE------QDTAVK 93
+A ++K+ L + +NS+ V+D L ++NE Q T
Sbjct: 422 KAMALLNKMLERKLSPSLITYNSLIHG--QCKVNDLESAYRLLSLMNENGLVPDQWTYSV 479
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F GRVEEA + +VK G+K + YTA++DG+CKVG+ + A LL +
Sbjct: 480 FIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA 539
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+P + T+N +I+ LC K+ +A L+ M G P+ +
Sbjct: 540 C------------------LPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVT 581
Query: 214 HDMLIKKL 221
+ +LI ++
Sbjct: 582 YTILIGEM 589
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 34/201 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P F+D + K ++E +F+S+K G + + L+
Sbjct: 472 PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI--------------- 516
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ VG+++ AY +L + ND P+ YTY +++G CK + EA L+ + + GV
Sbjct: 517 -DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGV 575
Query: 155 TQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALL 197
VVT L+ + +G+ P T+ + A G + +
Sbjct: 576 KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDD 635
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
++ M E G +P ++ +LI
Sbjct: 636 VIAKMNEEGILPDLVTYTVLI 656
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 88/189 (46%), Gaps = 44/189 (23%)
Query: 57 IDIFNSIKKDGT---NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113
+++F + DG ++ +N +LM+L S L++ ++ Y L+N
Sbjct: 141 LEVFRKMNADGEFKFKPTLRCYNTILMSL-------------SKFLLIDEMKTVYLELLN 187
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH- 172
+ + P++YT+ A+++G+CK+G EA ++ ++ G+ + T L+ +GH
Sbjct: 188 ---NQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLI----LGHC 240
Query: 173 --------------IPRT------ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
+P+ +++ N+I LC G+I++AL L M E P+
Sbjct: 241 RNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVR 300
Query: 213 SHDMLIKKL 221
++ +LI L
Sbjct: 301 TYTVLIYAL 309
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 85/191 (44%), Gaps = 9/191 (4%)
Query: 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN 97
SL A+ +K + + I I +K + ++ FN ++ +L + T F
Sbjct: 565 SLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMV-SLGYQPDVCTYTAFLHA 623
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ G +EE +++ + +G+ PD+ TYT ++DG+ ++G ++ A + L ++ G +
Sbjct: 624 YFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPS 683
Query: 158 VVTLIQLLQRL----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ + L++ L M I ++V L + AL L M EHG +
Sbjct: 684 LYIVSILIKNLSHENRMKETRSEIGIDSVSNTL----EYEIALKLFEKMVEHGCTIDVSI 739
Query: 214 HDMLIKKLDQQ 224
+ LI QQ
Sbjct: 740 YGALIAGFCQQ 750
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
E A ++ + G DV Y A++ GFC+ R EA L++ ERG++
Sbjct: 719 EIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMS--------- 769
Query: 165 LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +N+++ C +G +A+ L+ M E+G +P S+ +L+ L
Sbjct: 770 ---------PSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGL 817
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
R+EEA ++ ++K G+ P Y +++D CK+G EA+ L++ +E G+
Sbjct: 752 RLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGL 803
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L+ G +V +A +L + L P + TY +++ G CKV A LL+ E
Sbjct: 408 NELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNE 467
Query: 152 RGVTQNVVTLIQLLQRL-------EMGHI----------PRTITFNNVIQALCGVGKIHK 194
G+ + T + L E G + + + +I C VGKI
Sbjct: 468 NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDV 527
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A LL M +P+ ++++LI+ L ++
Sbjct: 528 AYSLLERMLNDACLPNSYTYNVLIEGLCKE 557
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 18/141 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE+A+++ +K +G+ PDVY YT ++D FCK G +A +E G NVVT
Sbjct: 237 KVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYT 296
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM-YE 204
L+ L G P +T+ +I LC GKI KA + +M E
Sbjct: 297 ALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKE 356
Query: 205 HGKIPSRTSHDMLIKKLDQQP 225
+ +IP H ++ +P
Sbjct: 357 NVEIPDVDMHFRVVDGASNEP 377
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 47/260 (18%)
Query: 4 SAANSPTPFSV-LLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLK 54
A+N P F+ LVD ++ E+ DL ++ P + +D KA L
Sbjct: 372 GASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLD 431
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL--------------- 99
E ++F ++ + G + +V ++ L+ L D A+K S L
Sbjct: 432 EAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMI 491
Query: 100 ----MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
VG+ +EAY++++ ++ G P+V TYTA++DGF K GR + +ELL + +G
Sbjct: 492 DGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCA 551
Query: 156 QNVVT---LI-------------QLLQRLEMGHIPRTIT-FNNVIQALCGVGKIHKALLL 198
N VT LI +LL+ ++ + PR + + VI+ + +L L
Sbjct: 552 PNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGF--NREFIASLYL 609
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
F + E+ +P + +LI
Sbjct: 610 SFEISENDSVPVAPVYRVLI 629
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 20/134 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G+ EA +L + + PD YT ++ G C+ EAM+ L NV+T
Sbjct: 24 GKWREALSLL---EKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTY 80
Query: 161 ---LIQLLQRLEMGHIPRTIT-------------FNNVIQALCGVGKIHKALLLLFLMYE 204
L L + ++G R ++ FN+++ A C G A LL M +
Sbjct: 81 RILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQ 140
Query: 205 HGKIPSRTSHDMLI 218
G P +++LI
Sbjct: 141 CGCQPGYVVYNILI 154
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE-----AMELLNEAIERGVTQ 156
G AY++L + G +P Y ++ G C + A + E +E GV
Sbjct: 126 GDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVL 185
Query: 157 NVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLL 199
N V + + L EM G IP T T++ VI LC K+ KA L
Sbjct: 186 NKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLF 245
Query: 200 FLMYEHGKIPSRTSHDMLI 218
M +G P + LI
Sbjct: 246 QEMKRNGIAPDVYVYTTLI 264
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 33/189 (17%)
Query: 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE 106
K+ A + + +++ N++ K+G +N +L + G+ +E
Sbjct: 219 KLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL----------------HGYCSSGQPKE 262
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A L +++DG++P+V TY+++M+ CK GRS EA ++ + +RG+ ++ T LLQ
Sbjct: 263 AIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQ 322
Query: 167 R-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ +G P IT+N +I C GK+ +A LL M G P
Sbjct: 323 GHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKP 382
Query: 210 SRTSHDMLI 218
++ LI
Sbjct: 383 DIVTYGTLI 391
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 79/149 (53%), Gaps = 6/149 (4%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNE 87
L +N RS +A++ D + L+ I + ++ K+G DL++ + + +
Sbjct: 289 LCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPD 348
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
T + G+++EA ++L ++ + G+KPD+ TY +++G+C+V R ++A+ L
Sbjct: 349 IITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFK 408
Query: 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
E + GV+ N++T +LQ L H RT
Sbjct: 409 EMVSSGVSPNIITYNIILQGLF--HTRRT 435
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 22/122 (18%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++ + L NV G + D T+T ++ G C R+++AM++
Sbjct: 105 AGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI--------------- 149
Query: 161 LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE---HGKIPSRTSHDM 216
+L+R+ E+G IP ++NN+++ LC + +AL LL +M + G P S++
Sbjct: 150 ---VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNT 206
Query: 217 LI 218
++
Sbjct: 207 VL 208
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------- 98
+++ SI K GT +S +N +L L N D A++ F N
Sbjct: 440 ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 499
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L GR++EA ++ +GL PDV TY+ + + + G E +L E G + +
Sbjct: 500 LKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADS 559
Query: 159 VTLIQLLQR-LEMGHIPRTITF 179
L ++++ L+ G I R T+
Sbjct: 560 RMLNSIVRKLLQRGDITRAGTY 581
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 34/144 (23%)
Query: 94 FFSNHLMVG-----RVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVG-------- 137
F N+L+ G R +EA E+L + +D G PDV +Y +++GF K G
Sbjct: 164 FSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQ 223
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
++AME+LN ++ GV +P +T+N+++ C G+ +A+
Sbjct: 224 AMDKAMEVLNTMVKNGV------------------MPDCMTYNSILHGYCSSGQPKEAIG 265
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
L M G P+ ++ L+ L
Sbjct: 266 TLKKMRSDGVEPNVVTYSSLMNYL 289
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A E+L + +G+ PD TY +I+ G+C G+ EA+ L + GV NVVT
Sbjct: 225 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVT--- 281
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+++++ LC G+ +A + M + G P ++ L++
Sbjct: 282 ---------------YSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQ 322
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
KA ++ + +K+ G + V + ++ AL A+++F
Sbjct: 116 CKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECAPDSVL 175
Query: 97 -NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
N L+ G ++ EA +M+ + G+ PDV TY +++DG CK R EA +LL +
Sbjct: 176 FNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMV 235
Query: 151 ERGVTQNVV---TLI-------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIH 193
+R V N+V TLI QL++R+ + G P +TFN++I C KI
Sbjct: 236 KRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKID 295
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KA +L LM + P+ ++++LI L
Sbjct: 296 KACEVLHLMKKGLCAPNLVTYNVLISGL 323
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 34/153 (22%)
Query: 65 KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
+ GT+ V FN L+ S ++++A E+L +K P++
Sbjct: 271 QSGTHPDVVTFNSLI----------------SGFCQKSKIDKACEVLHLMKKGLCAPNLV 314
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQ 184
TY ++ G C GR+NEA ELL+E RG+ +P IT+N++I
Sbjct: 315 TYNVLISGLCDAGRANEACELLSEMDGRGI------------------LPDIITYNSLIG 356
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
C +I +A + LM E G IP S+ L
Sbjct: 357 IFCRNFQIEQAFQIQNLMVERGVIPDGISYCTL 389
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI---------- 173
TY ++ GFCK G A +LL E ERG + +VVT ++Q L G++
Sbjct: 107 TYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRES 166
Query: 174 ----PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P ++ FN ++ LC ++ +A ++ M E G +P +++ LI L
Sbjct: 167 VECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGL 218
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 18/122 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R +EA+ +L N+ + G P+++T+ ++M+G C R +EA LL A+ R V
Sbjct: 398 RFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLL--AVMRRV-------- 447
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
G P T+ ++ LC G++ A +L +M G P +S ++ L
Sbjct: 448 --------GCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLA 499
Query: 223 QQ 224
++
Sbjct: 500 RE 501
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 94 FFSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F N LM G R++EA +L ++ G P TY ++ G CK GR ++A E+L
Sbjct: 419 FTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVM 478
Query: 149 AIERGV 154
+ G+
Sbjct: 479 MVSEGI 484
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 107/252 (42%), Gaps = 44/252 (17%)
Query: 4 SAANSP---TPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIF 60
SAA+SP +P + LVD R+ S E+ D+ L + + + + +
Sbjct: 81 SAASSPATTSPRAARLVD---RATSRGEAPDVY-----LCTKLIRNLCRRGRTSDAARVL 132
Query: 61 NSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV----------------GRV 104
+ ++ GT V +N L+ + D A + ++ + GRV
Sbjct: 133 RAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRV 192
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--- 161
EA +L ++ + G +P V TYT +++ CK +AME+L+E +G T N+VT
Sbjct: 193 GEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVI 252
Query: 162 -------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ L RL G P T+++ V++ LC + L M E
Sbjct: 253 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 312
Query: 208 IPSRTSHDMLIK 219
+P+ + DML++
Sbjct: 313 MPNEVTFDMLVR 324
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A++ L N+ + G PD +YT ++ G C+ R +A ELL E + +
Sbjct: 365 GRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP------ 418
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN I LC G I +A +L+ M EHG + +++ L+
Sbjct: 419 ------------PNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 466
Query: 222 DQQ 224
Q
Sbjct: 467 CVQ 469
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 20/150 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF G ++EA E++ + G P++ TY ++DG K S EA+ELL+ +
Sbjct: 530 VSFFCQK---GLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVS 586
Query: 152 RGVTQNVVT---LIQLLQR-------LEMGHI-------PRTITFNNVIQALCGVGKIHK 194
GV+ ++VT +I +L R ++M HI P+ + +N ++ ALC
Sbjct: 587 NGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDG 646
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ M +G +P+ ++ LI+ L +
Sbjct: 647 AIDFFAYMVSNGCMPNELTYITLIEGLANE 676
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A E L + + G +PD +YT ++ G C R + EL E +E+ N VT
Sbjct: 260 GRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTF 319
Query: 162 ----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
IQ+L+++ G T N VI +C G++ A L M
Sbjct: 320 DMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGS 379
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P S+ ++K L
Sbjct: 380 YGCSPDTISYTTVLKGL 396
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A E+L ++ G P++ TY I++G C+ GR ++A E LN G + V+ +L
Sbjct: 229 QAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVL 288
Query: 166 QRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L E +P +TF+ +++ C G + +A+ +L M HG
Sbjct: 289 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCA 348
Query: 209 PSRTSHDMLIKKLDQQ 224
+ T +++I + +Q
Sbjct: 349 ANTTLCNIVINTICKQ 364
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMV---GRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
D +LL +V N V F + ++ G +E+A ++ + G + ++ TY A++
Sbjct: 404 DAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALV 463
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ--------------LLQRLEMGHIPRT 176
+GFC GR + A+EL + T TL+ L + L+ P
Sbjct: 464 NGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNV 523
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+TFN ++ C G + +A+ L+ M EHG P+ +++ L+ + +
Sbjct: 524 VTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITK 570
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 90/199 (45%), Gaps = 33/199 (16%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-----------HLMVG----- 102
+ + + G ++ +N L+ + D+A++ F + L+ G
Sbjct: 443 LIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAE 502
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++ A E+L + P+V T+ ++ FC+ G +EA+EL+ + +E G T N++T
Sbjct: 503 RLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYN 562
Query: 163 QLL----------QRLEMGH-------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL + LE+ H P +T++++I L ++ +A+ + ++ +
Sbjct: 563 TLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 622
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P ++ ++ L ++
Sbjct: 623 GMRPKAVIYNKILLALCKR 641
>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A +L+N +G PD +TY +++DG C G +N A+ L NEA+ +G+ NV+
Sbjct: 335 GMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILY 394
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ L E G IP TFN ++ LC +G + A L+ +M
Sbjct: 395 NTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMIS 454
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P + ++LI Q
Sbjct: 455 KGYFPDIFTFNILIHGYSTQ 474
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++A+++ M +++ G+ PDVY++T M FC+ R + A+ LLN +G NVV
Sbjct: 125 GYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAY 184
Query: 162 I----------------QLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYE 204
+L ++ + + TFN ++ LC G + + LL + +
Sbjct: 185 CTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIK 244
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P+ +++ I+ L Q+
Sbjct: 245 RGVLPNLFTYNFFIQGLCQK 264
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +KE + + + K G ++ +N + L E D AV+ MVGR+
Sbjct: 228 KKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVR------MVGRL---- 277
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-------- 160
+ G KPDV TY ++ G CK + EA L + + G+ + T
Sbjct: 278 ------IDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGY 331
Query: 161 ----LIQLLQRLEM-----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
++QL +R+ + G +P T+ ++I LC G+ ++AL L G P+
Sbjct: 332 CKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNV 391
Query: 212 TSHDMLIKKLDQQ 224
++ LIK L Q
Sbjct: 392 ILYNTLIKGLSNQ 404
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E A E+L + ++G+ PDVYTY ++++G CK + + ME +E+G N+ T
Sbjct: 476 KMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFN 535
Query: 163 QLLQRLEMGHI-----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL+ L H P +TF +I C G + A L M E
Sbjct: 536 ILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEV 595
Query: 206 GKIPSRT-SHDMLIKKLDQQ 224
+ T +++++I ++
Sbjct: 596 YMVSCSTPTYNIIIHAFTEK 615
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 33/187 (17%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E ++F + G + +S FN LL L G V+E ++L V
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLHVLCK----------------KGDVKECEKLLDKV 242
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--------- 165
G+ P+++TY + G C+ G + A+ ++ I++G +VVT L+
Sbjct: 243 IKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKF 302
Query: 166 QRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
Q E+ G P + T+N +I C G + A +L +G +P ++ L
Sbjct: 303 QEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSL 362
Query: 218 IKKLDQQ 224
I L +
Sbjct: 363 IDGLCHE 369
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 22/173 (12%)
Query: 68 TNWSVSDFNDLLMALVMLNE--QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYT 125
TN +++ FN+ L + N +T +K SN G + EA ++ + GL P+V T
Sbjct: 372 TNRALALFNEALGKGIKPNVILYNTLIKGLSNQ---GLILEAAQLASEMSEKGLIPEVQT 428
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ----RLEM----------- 170
+ +++G CK+G ++A L+ I +G ++ T L+ +L+M
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMM 488
Query: 171 --GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G P T+N+++ LC K + M E G P+ + ++L++ L
Sbjct: 489 DNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
L PD YTY ++DGFCK G + + LL+ +E G IP T
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVDLGYKF------------------LLEMMENGFIPSLTT 674
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
VI LC ++++A ++ M + G +P
Sbjct: 675 LGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 34/191 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K S ++ ++ + ++ + G ++ FN LL +L ++ D A+ G +EE
Sbjct: 508 KTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKAL---------GLLEE-- 556
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE---------------RG 153
+KN + PD T+ ++DGFCK G + A L + E
Sbjct: 557 -----MKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHA 611
Query: 154 VTQ--NVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
T+ NV +L Q + + P T+ ++ C G + L M E+G IPS
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPS 671
Query: 211 RTSHDMLIKKL 221
T+ +I L
Sbjct: 672 LTTLGRVINCL 682
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G EEA ++L N+ +DGL PD TYT+I++GF K G +A E+ NE + +GV +VVT
Sbjct: 509 GNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTY 568
Query: 162 IQLL------QRLEMGHI-----------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q L++ + IT+N +I LC ++ +A M E
Sbjct: 569 TVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEE 628
Query: 205 HGKIPSRTSHDMLIKK 220
G +P++ S+ +LI +
Sbjct: 629 KGILPNKFSYTILINE 644
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG------ 153
M G ++ A + + + GL PD++TYT +++G K+G + A NE + +G
Sbjct: 402 MWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRF 461
Query: 154 -----------VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ V + L G P IT+N + ALC G +A LL M
Sbjct: 462 AYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENM 521
Query: 203 YEHGKIPSRTSHDMLI 218
G IP ++ +I
Sbjct: 522 VSDGLIPDHVTYTSII 537
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
++ + + Y M+ + G+KP V TY ++D +CK GR ++A+ELL+E ERG N V
Sbjct: 195 LLSKAKNVYGMM---EQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDV 251
Query: 160 TLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L+ + L G T+N +I C G +A L+ M
Sbjct: 252 TYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEM 311
Query: 203 YEHGKIPSRTSHDMLIKKL 221
P+ ++++ L+ L
Sbjct: 312 VNRRAFPTLSTYNTLMYGL 330
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER--------- 152
G +E+A ++ + N GL YTY +++GFC+ G EA +L+ E + R
Sbjct: 264 GELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTY 323
Query: 153 -----GVTQNV-VTLIQLL--QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
G+ + V VT ++L L+ P ++FN+++ C G I +A LL +
Sbjct: 324 NTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKC 383
Query: 205 HGKIPSRTSHDMLIKKL 221
+P+ +++ LI L
Sbjct: 384 RDLVPTVITYNTLIHGL 400
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 27/182 (14%)
Query: 15 LLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDK-IKASPLKERIDIFNSIKKD 66
+ V + + + E+ DL EN P + ++ +K L++ ++FN +
Sbjct: 500 VFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSK 559
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------------MVGRVEEA 107
G SV + L+ A D A +FS L M R++EA
Sbjct: 560 GVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEA 619
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y+ ++ G+ P+ ++YT +++ C +G EA+ L E ++R + + T L+
Sbjct: 620 YKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKN 679
Query: 168 LE 169
L
Sbjct: 680 LH 681
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
PD+ ++ +++ G+C+ G +EA L +E R + +P IT
Sbjct: 351 FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDL------------------VPTVIT 392
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+N +I LC G + AL L M + G P ++ +L+
Sbjct: 393 YNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILV 432
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ G P +T+N ++ + C G++ +AL LL M E G P+ ++++L+ L ++
Sbjct: 208 QFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKK 263
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 17/136 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR EE ML +K G +P Y A++D +C+ ++ EA ++LNE + G+ VVT
Sbjct: 243 AGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVT 302
Query: 161 L----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ + + G P T+N ++Q C GK++KA+ LL M
Sbjct: 303 CTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMR 362
Query: 204 EHGKIPSRTSHDMLIK 219
E G P ++++LI+
Sbjct: 363 ECGVEPDVVTYNLLIR 378
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ A + +++ G +P+V+TY AI+ GFC G+ +AM LL++ E GV +VVT
Sbjct: 314 GRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTY 373
Query: 162 IQLLQRLEM--GHIPRTI----------------TFNNVIQALCGVGKIHKALLLLFLMY 203
LL R + GHI T+N +I ALC GK+ +A L +
Sbjct: 374 -NLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLE 432
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P+ + + +I L
Sbjct: 433 YRGIRPNSVTFNTVINGL 450
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A+ +L ++ +GL D YTY ++D CK G+ +EA L + RG+
Sbjct: 384 GHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIR------ 437
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P ++TFN VI LC GK A L M G P ++ I+ L
Sbjct: 438 ------------PNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENL 485
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 33/165 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K + E +F+ ++ G + FN ++ L + D A F N +
Sbjct: 416 CKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMI-------- 467
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ G PD YTY+ ++ CK S E + ++E +++ V + V ++ R
Sbjct: 468 --------SAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINR 519
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
L G P +T+ ++A C G++ +A
Sbjct: 520 LFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEA 564
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 27/130 (20%)
Query: 94 FFSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F N L++G ++E A+++ + G D +Y A+++GFC+ GR +EA+EL E
Sbjct: 165 FTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFRE 224
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+TQ P T +++ LC G+ + L +L M E G
Sbjct: 225 -----MTQ-----------------PDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWR 262
Query: 209 PSRTSHDMLI 218
P+ ++ L+
Sbjct: 263 PTTRAYAALV 272
>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Brachypodium distachyon]
Length = 597
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 22/157 (14%)
Query: 84 MLNEQDT--AVKFF---SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
M++E ++ A+ +F S GR+++A+ M ++K G + D Y ++ GFC+ R
Sbjct: 344 MVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKR 403
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNN 181
NEA ELL E E G+ +V T LL L + G P +TF
Sbjct: 404 LNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGT 463
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+I C VG+I +AL + M E G P+ ++ LI
Sbjct: 464 LIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLI 500
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 37/188 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE----------------QDTAVKFFS 96
L E ++ +K+ G V +N LL L + + + V F +
Sbjct: 404 LNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGT 463
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ VG+++EA + ++ G++P+ Y ++D CK ++ A+EL +E E+
Sbjct: 464 LIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKH 523
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
V NV T LL+ L ++P KA L+ LM E P +
Sbjct: 524 VPANVTTFNALLKGLRDKNMP------------------EKAFELMDLMREGRCTPDYVT 565
Query: 214 HDMLIKKL 221
D+L++ L
Sbjct: 566 IDILMEWL 573
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 85/235 (36%), Gaps = 62/235 (26%)
Query: 8 SPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDG 67
SP S LL SRSPS+ S A RF+ +S+
Sbjct: 98 SPRILSALLYKILSRSPSS-----------SADAARFLR--------------DSLAAGA 132
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
S FN LL AL + + F++ +++ ++P+V TY
Sbjct: 133 PPPDTSAFNTLLDALAQAGDLPGMTQLFAS----------------MRDASVRPNVVTYG 176
Query: 128 AIMDGFCKVGRSNEAMELLNEA---------------------IERGVTQNVVTLIQLLQ 166
++ G CK GR +A+ +L+ + G Q V ++
Sbjct: 177 ILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERM 236
Query: 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
R G P T+T+N + A C G + A L+ M + P+ + + ++ L
Sbjct: 237 RSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGL 291
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 20/98 (20%)
Query: 101 VGRVEEAYEMLMNVKND--GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
GR+++A + + G P+ TY + FC+ G A EL+ + + VT N
Sbjct: 222 TGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNA 281
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
VTL N ++ LC VG++ AL
Sbjct: 282 VTL------------------NTIVGGLCWVGRVGAAL 301
>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
Length = 399
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 16/144 (11%)
Query: 94 FFSNHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
FF + L G+V EA E++ N+K+ KPDV T+ ++ G CK GR +EA ++L+E
Sbjct: 59 FFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERS 118
Query: 153 GVTQNVVTLIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLL 198
G N+VT L+ L M P T T+N +I C G+I +A
Sbjct: 119 GFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGF 178
Query: 199 LFLMYEH-GKIPSRTSHDMLIKKL 221
L M + G P ++ +LI L
Sbjct: 179 LEEMKQRAGCSPDTFTYSILINGL 202
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 20/202 (9%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLM-ALVMLNEQDTAVKFFSNH 98
+AQ+ +D+++ S + +N++ ++ S L+M + + T
Sbjct: 107 EAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGF 166
Query: 99 LMVGRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQ 156
G ++ AY L +K G PD +TY+ +++G CK +A ELL E I R
Sbjct: 167 CKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCA 226
Query: 157 NVV---TLI------QLLQR--------LEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+VV TL+ Q L R LE G P +T++ +I LC G + K LL
Sbjct: 227 SVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALL 286
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M G P ++ +L+ L
Sbjct: 287 EKMVSRGCKPDVVTYTVLVTGL 308
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-- 161
++ A E+L ++ G PDV TY+ I+DG C+ G ++ LL + + RG +VVT
Sbjct: 244 LDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTV 303
Query: 162 --------------IQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L++R LE G P +T++ V LC + K+ A LL + + G
Sbjct: 304 LVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363
Query: 207 KIPSRTSHDMLI 218
++ + + L+
Sbjct: 364 RVTDVVAFETLL 375
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 19/125 (15%)
Query: 98 HLMVGRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H + G ++ A ++L ++ G+ P Y + CK G+ EAME++ ++ G +
Sbjct: 28 HCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN-MKDGACK 86
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P +TFN +I LC G++ +A +L M G + +++
Sbjct: 87 -----------------PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNT 129
Query: 217 LIKKL 221
LI L
Sbjct: 130 LINGL 134
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
IKA E ++F S+K+ G +N ++ + + A + G
Sbjct: 563 IKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTV 622
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
R++EAY + K+ ++ +V Y++++DGF KVGR +EA +L E
Sbjct: 623 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEE 682
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
+++G+T NV T LL L E+ P +T+ +I LC V K
Sbjct: 683 LMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRK 742
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+KA + M + G PS S+ +I L
Sbjct: 743 FNKAFVFWQEMQKQGMKPSTISYTTMISGL 772
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
+KA+ L+E D+ +++K + S + L+ A +N D + F
Sbjct: 144 VKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTV 203
Query: 98 HLMV---------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
HL GRV+ A +L +K+ L D+ Y +D F KVG+ + A + +E
Sbjct: 204 HLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMG-HIPRTITFNNVIQALCGVGK 191
G+ + VT +++ + LE +P T +N +I GK
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGK 323
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A LL G IPS +++ ++ L
Sbjct: 324 FDEAYSLLERQRAKGSIPSVIAYNCILTCL 353
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G E+ M +K+ PD +Y+ ++ G K G +NE EL E+G +
Sbjct: 530 AGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLD--- 586
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
T +N VI C GK++KA LL M G P+ ++ +I
Sbjct: 587 ---------------TRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631
Query: 221 L 221
L
Sbjct: 632 L 632
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 35/174 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA+ L E +++F ++K+ +N ++M + G+ +EA
Sbjct: 284 CKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMG----------------YGSAGKFDEA 327
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y +L + G P V Y I+ K+G+ +EA+ + E
Sbjct: 328 YSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEE------------------- 368
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ P T+N +I LC GK+ A L M + G P+ + ++++ +L
Sbjct: 369 MKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRL 422
Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 26/149 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---------FSN-- 97
K + E + +F +KKD ++S +N L+ L + D A + F N
Sbjct: 355 KMGKVDEALRVFEEMKKDAAP-NLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVR 413
Query: 98 --HLMVGRV------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++MV R+ +EA + + PD T+ +++DG KVGR ++A ++ +
Sbjct: 414 TVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKM 473
Query: 150 IERGVTQNVVTLIQLLQ------RLEMGH 172
++ N + L++ R E GH
Sbjct: 474 LDSDCRTNSIVYTSLIKNFFNHGRKEDGH 502
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 32/194 (16%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN------HLMV---------G 102
D+F+ + G V + L+ D AV+ F H+ G
Sbjct: 67 DLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAG 126
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R EE ML +K G +P Y A++D C ++ EA E+L E E+G+ VVT
Sbjct: 127 RGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCT 186
Query: 163 QL-------------LQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ L+ LE+ G P T+N ++Q C GK+HKA+ LL M
Sbjct: 187 AVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVC 246
Query: 206 GKIPSRTSHDMLIK 219
G P ++++LI+
Sbjct: 247 GVNPDAVTYNLLIR 260
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A+ +L ++ DGL D YTY A+++ CK GR+++A L + RG+
Sbjct: 266 GHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIK------ 319
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN++I LC GK+ A L M G P ++ I+ L
Sbjct: 320 ------------PNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHL 367
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 18/132 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + GR+ +A +L +K G KP+V+TY A++ GFC G+ ++AM LLN+
Sbjct: 184 TCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKM 243
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
GV P +T+N +I+ C G I A LL LM G I
Sbjct: 244 RVCGVN------------------PDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIA 285
Query: 210 SRTSHDMLIKKL 221
+ +++ LI L
Sbjct: 286 DQYTYNALINAL 297
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI--- 173
G +PD YT+ +++ G+C+ + + A +L ++ RG Q+VV+ L++ E G I
Sbjct: 41 GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEA 100
Query: 174 ---------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P + +++ LC G+ + LL+L M E G PS ++ ++
Sbjct: 101 VELFGEMDQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVV 154
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+S++ G + FN L+ L G+V+ A++ L + + G
Sbjct: 309 LFDSLETRGIKPNAVTFNSLINGLC----------------KSGKVDIAWKFLEKMVSAG 352
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV---TQNVVTLI-QLLQRLEMGHIP 174
PD YTY++ ++ CK+ S E + + E +++ V T N +I +LL+ G +
Sbjct: 353 CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVA 412
Query: 175 RT-------------ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
RT +T+ ++A C G++++A +L M ++G +++ L+
Sbjct: 413 RTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 469
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 18/132 (13%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE--- 148
N L+VG +V+ A ++ + G DV +Y A+++GFC+ GR +EA+EL E
Sbjct: 50 NSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ 109
Query: 149 -------AIERGVTQ---NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
A+ +G+ + L+ L + E+G P T + V+ C K +A +
Sbjct: 110 PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEM 169
Query: 199 LFLMYEHGKIPS 210
L M+E G P
Sbjct: 170 LQEMFEKGLAPC 181
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
+ G PDV TYT M +C GR NEA +L E + GVT +
Sbjct: 420 SSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVD------------------ 461
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ +N ++ +G+ A+ +L M +P++ ++ +L++ L
Sbjct: 462 TMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHL 507
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ + GR+ EA +LM + +G+ D Y +MDG +G+++ A+ +L + N
Sbjct: 437 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 496
Query: 158 VVTLIQLLQRL 168
T LL+ L
Sbjct: 497 QFTYFILLRHL 507
>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Glycine max]
Length = 1024
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RVEEA+E+L + +G +P+ Y A++DGFCK G+ A E+ + ERG N+ T
Sbjct: 624 RVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYS 683
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + LE P + + ++I LC VGK +A L+ M E
Sbjct: 684 SLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEV 743
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ +I
Sbjct: 744 GCYPNVITYTAMI 756
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 20/134 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE+A+ + +K +G+ P VYTYT ++D FCK G +A +E + T NVVT
Sbjct: 468 KVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYT 527
Query: 163 QLLQR-------------LEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ EM G P +T+ +I C G+I KA + M
Sbjct: 528 SLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARM--Q 585
Query: 206 GKIPSRTSHDMLIK 219
G I S + DM K
Sbjct: 586 GDIES-SDIDMYFK 598
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ EEAY +++ ++ G P+V TYTA++DGF K+G+ + +EL + +G N +T
Sbjct: 727 VGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFIT 786
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G++E A E+ + + G P++YTY+++++ K R + +++L++ +E T NVV
Sbjct: 657 TGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVI 716
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L E+G P IT+ +I +GKI + L L M
Sbjct: 717 YTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMC 776
Query: 204 EHGKIPSRTSHDMLI 218
G P+ ++ +LI
Sbjct: 777 SKGCAPNFITYRVLI 791
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 24/180 (13%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA + + +F + +G+ +V + L+ + D A + ++ M G +E +
Sbjct: 534 LKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYAR--MQGDIESS 591
Query: 108 YEMLMNVK---NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++ M K ND P++ TY A++DG CK R EA ELL+ G
Sbjct: 592 -DIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCE--------- 641
Query: 165 LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
P I ++ +I C GK+ A + M E G P+ ++ LI L ++
Sbjct: 642 ---------PNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKE 692
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 22/173 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA +++ + F+ + +D +V + L+ A + + A K F L+
Sbjct: 499 CKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLL------- 551
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+G KP+V TYTA++DG CK G+ ++A ++ A +G ++ + I + +
Sbjct: 552 ---------EGSKPNVVTYTALIDGHCKAGQIDKACQIY--ARMQGDIES--SDIDMYFK 598
Query: 168 LEMG--HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L+ P IT+ ++ LC ++ +A LL M +G P++ +D LI
Sbjct: 599 LDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALI 651
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 18/85 (21%)
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193
C G+ ++A E++ E + +G +P T++ VI LC K+
Sbjct: 429 CGAGKFDKAFEIICEMMSKGF------------------VPDDSTYSKVIGFLCDASKVE 470
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLI 218
KA LL M ++G +PS ++ +LI
Sbjct: 471 KAFLLFEEMKKNGIVPSVYTYTILI 495
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------------ 148
+G++E+ E+ ++ + G P+ TY +++ C G +EA LL+E
Sbjct: 762 IGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQTYWPRHISS 821
Query: 149 --AIERGVTQNVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
I G + +T I LL L E +P + +I G++ AL LL
Sbjct: 822 YRKIIEGFNREFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNLL 875
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 30/170 (17%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122
+K G S + +N L+ + ++ DTA +V R + N G + D
Sbjct: 196 LKDFGYKASPTTYNALIQVFLRADKLDTA-------FLVHR---------EMSNSGFRMD 239
Query: 123 VYTYTAIMDGFCKVGRSNEAMELL--NEAIERGVTQNVV-------TLIQ----LLQRLE 169
T CK GR +A+ LL E + V N + +L Q +L R+
Sbjct: 240 GCTLGCFAYSLCKAGRCGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMR 299
Query: 170 -MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ IP +T+ ++ G G++ + +L +M G P+R + L+
Sbjct: 300 SISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLV 349
>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
Length = 399
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 16/144 (11%)
Query: 94 FFSNHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
FF + L G+V EA E++ N+K+ KPDV T+ ++ G CK GR +EA ++L+E
Sbjct: 59 FFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERS 118
Query: 153 GVTQNVVTLIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLL 198
G N+VT L+ L M P T T+N +I C G+I +A
Sbjct: 119 GFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGF 178
Query: 199 LFLMYEH-GKIPSRTSHDMLIKKL 221
L M + G P ++ +LI L
Sbjct: 179 LEEMKQRAGCSPDTFTYSILINGL 202
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-- 161
++ A E+L ++ G PDV TY+ I+DG C+ G ++ LL + + RG +VVT
Sbjct: 244 LDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTV 303
Query: 162 --------------IQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L++R LE G P +T++ V LC + K+ A LL + + G
Sbjct: 304 LVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363
Query: 207 KIPSRTSHDMLI 218
+I + + L+
Sbjct: 364 RITDVVAFEALL 375
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 20/202 (9%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLM-ALVMLNEQDTAVKFFSNH 98
+AQ+ +D+++ S + +N++ ++ S L+M + + T
Sbjct: 107 EAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGF 166
Query: 99 LMVGRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQ 156
G ++ AY L +K G PD +TY+ +++G CK +A ELL E I R
Sbjct: 167 CKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCA 226
Query: 157 NVV---TLI------QLLQR--------LEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+VV TL+ Q L R LE G P +T++ +I LC G + K LL
Sbjct: 227 SVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALL 286
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M G P ++ +L+ L
Sbjct: 287 EKMVSRGCKPDVVTYTVLVTGL 308
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 19/125 (15%)
Query: 98 HLMVGRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H + G ++ A ++L ++ G+ P Y + CK G+ EAME++ ++ G +
Sbjct: 28 HCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKN-MKDGACK 86
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P +TFN +I LC G++ +A +L M G + +++
Sbjct: 87 -----------------PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNT 129
Query: 217 LIKKL 221
LI L
Sbjct: 130 LINGL 134
>gi|357112338|ref|XP_003557966.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 538
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 33/181 (18%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM 100
A+ +I + P++ER+ + + +++D ++SD+ND+L AL + D+A+ F
Sbjct: 91 ARDCARRIMSLPMEERVKVLDLLQRDDAALTISDYNDILSALARGGDYDSAMALF----- 145
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
A E N + PD +++ + FC+ G +EA E L+E + R
Sbjct: 146 -----RALE-----PNGTVAPDAHSFAIAVQCFCRKGAPDEAKETLDEMLAR-------- 187
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
G++P F+ V+ LC G++ +A+ +L M G P+ +++ LI
Sbjct: 188 ----------GYLPTVSAFSAVVGCLCKRGRVTRAMEVLDAMRGVGCEPTIRTYNSLIGG 237
Query: 221 L 221
L
Sbjct: 238 L 238
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 35/187 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+++ ++++ G ++ +N L+ L VGR+E+A ++L +K+
Sbjct: 213 MEVLDAMRGVGCEPTIRTYNSLIGGLCY----------------VGRLEDARDLLNKLKD 256
Query: 117 DGLK-PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-RLEMGHI- 173
+ D+YT+T ++DGFCKVGR+++AM + +A+ G++ + T LL + GH+
Sbjct: 257 SPKQTADIYTFTIVLDGFCKVGRTDDAMAIFEDAVRTGLSPTIFTYNALLNGHCKEGHLL 316
Query: 174 ----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
P I+F+ V+ AL G+I A M G + D L
Sbjct: 317 KAYNLLMEMCDNETCPPDKISFSIVLPALLRAGEISAAWQTFKRMEHAGLEADGRALDTL 376
Query: 218 IKKLDQQ 224
+ L +Q
Sbjct: 377 TRGLCRQ 383
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA------------ 149
GRV A E+L ++ G +P + TY +++ G C VGR +A +LLN+
Sbjct: 207 GRVTRAMEVLDAMRGVGCEPTIRTYNSLIGGLCYVGRLEDARDLLNKLKDSPKQTADIYT 266
Query: 150 --------IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
+ G T + + + + + G P T+N ++ C G + KA LL
Sbjct: 267 FTIVLDGFCKVGRTDDAMAIFE--DAVRTGLSPTIFTYNALLNGHCKEGHLLKAYNLLME 324
Query: 202 MYEHGKIP 209
M ++ P
Sbjct: 325 MCDNETCP 332
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 22/148 (14%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK-----VGRSNEAMELLNEAIERG 153
L G + A++ +++ GL+ D + G C+ + +A E+ + + G
Sbjct: 346 LRAGEISAAWQTFKRMEHAGLEADGRALDTLTRGLCRQCAADISALRDAKEVFGKLVSSG 405
Query: 154 ---VTQNVVTLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKAL 196
V+ + Q L R G+ R + +V++ALC + +A+
Sbjct: 406 HEPVSYTYCLMAQALARGGEVDAAVAILDDMARKGYALRKRAYTDVVRALCDRSRTSEAV 465
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+L ++ +P R + D L+ +L +Q
Sbjct: 466 RVLAVVIARDFVPGRNAFDALLGELSRQ 493
>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
Length = 506
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 38/206 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLL---------------MALVMLNEQDTAVKFFSN 97
LK+ ID+FN + + V FN L+ + ++M+ + V F N
Sbjct: 259 LKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTF-N 317
Query: 98 HLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
L+ G +++E + + G+KP+V TY ++MDG+C V + N+A ++ N +R
Sbjct: 318 TLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQR 377
Query: 153 GVTQNVVTLIQLLQR--------------LEMGH---IPRTITFNNVIQALCGVGKIHKA 195
GVT NV + ++ +EM H IP +T+N++I LC GKI A
Sbjct: 378 GVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYA 437
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKL 221
L+ M++ G+ P+ +++ ++ L
Sbjct: 438 FQLVNEMHDRGQPPNIITYNSILNAL 463
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 21/142 (14%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
IFN++ + G +V +N ++ + + D A+K F +E ++ ++
Sbjct: 370 IFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLF--------IEMHHKHII------ 415
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----EMGHI 173
PDV TY +++DG CK G+ + A +L+NE +RG N++T +L L + G
Sbjct: 416 --PDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNALLTKLKDQGIQ 473
Query: 174 PRTITFNNVIQALCGVGKIHKA 195
P T +I+ LC GK+ A
Sbjct: 474 PNMHTDTILIKGLCQSGKLEAA 495
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 75/148 (50%), Gaps = 23/148 (15%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+VG++++A ++ + + +KPDVYT+ ++DGFCK GR +A +L+ + + + NV
Sbjct: 254 FIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNV 313
Query: 159 VTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
T L+ ++ G P +T+ +++ C V +++KA +
Sbjct: 314 STFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNT 373
Query: 202 MYEHGKIPSRTSHDML------IKKLDQ 223
M + G + S++++ IKK+D+
Sbjct: 374 MSQRGVTANVHSYNIMINGFCKIKKVDK 401
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
+F+D L+AL +Q + + VG A ++L V ++ + Y ++DG
Sbjct: 159 NFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGM 218
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMGHI-PRT 176
K N+A +L +E + + ++ +VVT I L ++ + +I P
Sbjct: 219 SKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDV 278
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN ++ C G++ KA +L +M P+ ++ + L+
Sbjct: 279 YTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLV 320
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 44/197 (22%)
Query: 11 PFSVLLVDSPSRSPSAAESLD---LKENPRSLQAQRFVDKIKASPLKER-----IDIFNS 62
P+S + S A SL L +NP +L A F +KI S +K + + +
Sbjct: 36 PYSSISTTFHSNDVDGAVSLFNSLLHQNP-TLTAFEF-NKILGSLVKSKHYHTVLSLSQQ 93
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122
++ +G N + FN L+ L G + A+ +L + G +PD
Sbjct: 94 MEFEGINPNFVTFNILINCFCQL----------------GLIPFAFSVLAKILKMGYEPD 137
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182
+ T + GFC G+ ++A+ ++ + G H+ + +++ +
Sbjct: 138 IITLNTFIKGFCLKGQIHQALNFHDKLVALGF-----------------HLDQ-VSYGTL 179
Query: 183 IQALCGVGKIHKALLLL 199
I LC VG+ AL LL
Sbjct: 180 INGLCKVGETRAALQLL 196
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 42/249 (16%)
Query: 13 SVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKI----KASPLKERIDIFNSIKKDGT 68
S+ + ++PSA E + +E L A + I ++ KE ++++ + +G
Sbjct: 168 SLFIRGGLRQAPSALEKM--REAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGL 225
Query: 69 NWSVSDFNDLLMA----------LVMLNEQDTA-----VKFFSNHLMV----GRVEEAYE 109
S+ F+ L++A + +L E ++ + ++ + V G+++EAY
Sbjct: 226 KPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYR 285
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL- 168
++ + +DG PDV TYT ++D C + ++AM L + + VT + LL +
Sbjct: 286 IMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFS 345
Query: 169 -------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
EM G+ P +TF ++ ALC G+I++A LL M + G +P+
Sbjct: 346 DCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLH 405
Query: 213 SHDMLIKKL 221
+++ LI L
Sbjct: 406 TYNTLISGL 414
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR+ EA M +K+ GL PD TY +M + KVG+ +EA++LL+E + +V+
Sbjct: 487 MGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIV 546
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ L+ L EM P +T+N ++ L G+I KA+ L M
Sbjct: 547 INSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMN 606
Query: 204 EHGKIPSRTSHDMLIKKL 221
HG P+ + + L+ L
Sbjct: 607 GHGCSPNTITFNTLLDCL 624
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 33/168 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + E D+ ++++K G ++ +N L+ L+ N D A+ FSN
Sbjct: 381 KAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSN----------- 429
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+++ G++P YTY ++D K G +A+E + RG+ N+V L L
Sbjct: 430 -----MESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSL 484
Query: 169 -EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLL 199
EMG + P ++T+N +++ VG++ +A+ LL
Sbjct: 485 AEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLL 532
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 45/239 (18%)
Query: 9 PTPFS-VLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKAS--------PLKERIDI 59
PT ++ +LL+D +S ++L+ E ++ + AS L E +
Sbjct: 437 PTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAM 496
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLM----- 100
FN +K G +N ++ + + D A+K S N L+
Sbjct: 497 FNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYK 556
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRVEEA++M ++ L P V TY ++ G K G+ +A++L G + N +T
Sbjct: 557 AGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTIT 616
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
LL L M P +TFN +I +I A+ L M
Sbjct: 617 FNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQM 675
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L V VE A+ + +K+ G PD +TY +++D K G+ NE +L +E + RG N
Sbjct: 801 LEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNT 860
Query: 159 VTL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFL 201
+T + L L G P TF +I L G++ A +
Sbjct: 861 ITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDG 920
Query: 202 MYEHGKIPSRTSHDMLI 218
M +G P+ +++L+
Sbjct: 921 MVHYGCRPNSAIYNILV 937
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +++ ++ ++ DG PDV T+T +++ CK GR NEA +LL+ ++GV
Sbjct: 347 CGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGV------ 400
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P T+N +I L ++ AL L M G P+ ++ +LI
Sbjct: 401 ------------LPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLI 446
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 36/174 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------- 99
+K+ L + ++F+ + G + + +N L+ L DTA +FF +
Sbjct: 906 LKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDL 965
Query: 100 -----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ GRV++A +K GL PD+ Y +++G + R+ EA+ L +E
Sbjct: 966 KSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHE 1025
Query: 149 AIERGVTQNVVTLIQLLQRL-------EMGHI----------PRTITFNNVIQA 185
RG+ ++ T L+ L E G I P T+N +I+
Sbjct: 1026 MQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRG 1079
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/194 (18%), Positives = 79/194 (40%), Gaps = 37/194 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------- 98
K+ + E D+++ + G + +N ++ LV N D A+ + N
Sbjct: 837 KSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPC 896
Query: 99 ---------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
L GR+++A+EM + + G +P+ Y +++G+ K+G + A E
Sbjct: 897 TFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRM 956
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
++ G+ P ++ ++ LC G++ AL + + G P
Sbjct: 957 VKEGIR------------------PDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDP 998
Query: 210 SRTSHDMLIKKLDQ 223
+++++I L +
Sbjct: 999 DLVAYNLMINGLGR 1012
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
DL+ ++ DT + F + + G + +A L ++ G + Y+Y ++ +
Sbjct: 148 DLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQS 207
Query: 137 GRSNEAMELLNEAIERGVT----------------QNVVTLIQLLQRLE-MGHIPRTITF 179
G EA+E+ + G+ +N+ T++ LL+ +E MG P T+
Sbjct: 208 GFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTY 267
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I+ L GKI +A ++ M + G P ++ +LI L
Sbjct: 268 TICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDAL 309
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+VG +EEA ++ ++ GLKP+V+TY A++ G+ G S A + + + G N
Sbjct: 1047 IVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTG 1106
Query: 160 TLIQL 164
T QL
Sbjct: 1107 TFAQL 1111
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
K G+KP + Y ++DGF +V A L E G P
Sbjct: 782 KELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCA------------------P 823
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T T+N++I A GKI++ L M G P+ +++M+I L
Sbjct: 824 DTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNL 870
>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
Length = 882
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 85 LNEQDTAVKFFSNHL-MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
L E + + F N+L GR+EEA E+ ++ + GL PD YT++MDGF K G+ ++A
Sbjct: 328 LEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAF 387
Query: 144 ELLNEAIERGVTQNVVT---LIQLLQRL-------------EMGHIPRTITFNNVIQALC 187
+ E E+ +VV LI L +L ++G P + TFN +I A C
Sbjct: 388 NIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMINAYC 447
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G + AL LL M +G P+ + ++L+++L
Sbjct: 448 KEGNLGNALKLLNEMKSYGLKPNSITCNILVQRL 481
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A E+L +K +G PD+ TY +M+GFCK+G A +L+ E + NV+T
Sbjct: 31 GEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITY 90
Query: 162 IQLL------QRLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q LE +P +T+ ++ LC GK+ +A + M E
Sbjct: 91 TTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEE 150
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+R S+ LI L
Sbjct: 151 VGVVPNRFSYATLIDSL 167
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VEEA + ++ G+ P+ ++Y ++D K G EA L + RG+ +VV
Sbjct: 136 GKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVY 195
Query: 162 IQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ LE +P +T++ +I C +G ++K LLL M E
Sbjct: 196 TALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEE 255
Query: 205 HGKIPS 210
P+
Sbjct: 256 KHIFPN 261
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 37/179 (20%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
+S LK+ + + + +G + +V +N LL L +A + ++EA
Sbjct: 589 SSHLKKAFAVHSQMLTEGVSPNVETYNILLGGL-------SAARL---------IKEAAG 632
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
++ +K GL P+ TY ++ G K+G E ++L E I +G
Sbjct: 633 LVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGF--------------- 677
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI---KKLDQQP 225
+P+T T+N +I K+ +A L+ M G P+ +++D+LI KL +QP
Sbjct: 678 ---VPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQP 733
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 20/143 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G V EA+ + + G+ DV YTA+MDG K G +N A ++ +E + N VT
Sbjct: 171 GNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTY 230
Query: 161 --LIQ-------------LLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI LLQ +E HI P I +++++ G +++A+ ++ M +
Sbjct: 231 SALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQ 290
Query: 205 HGKIPSRTSHDMLIK---KLDQQ 224
+P+ + LI K DQ+
Sbjct: 291 RNILPNVFVYGTLIDGYFKADQR 313
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 9/158 (5%)
Query: 9 PTPFS-VLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDG 67
P FS L+DS + + AE+ L+ R V + + + + + K G
Sbjct: 155 PNRFSYATLIDSLFKEGNVAEAFVLQ--------GRMVVRGIGFDVVVYTALMDGLFKAG 206
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+ D +L+ ++ T H +G V + +L ++ + P+V Y+
Sbjct: 207 MANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYS 266
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+I+DG+ K G NEAM+++ + ++R + NV L+
Sbjct: 267 SIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLI 304
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S +G + A + ++ G+ D+ TY A++ G+C +A + ++ + GV+
Sbjct: 549 STFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVS 608
Query: 156 QNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
NV T LL Q E G +P T++ ++ +G + + + L
Sbjct: 609 PNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKL 668
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
M G +P ++++LI
Sbjct: 669 YCEMITKGFVPKTRTYNVLI 688
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A ++L +K+ GLKP+ T ++ C G + M+LLN+ + G T
Sbjct: 450 GNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTH 509
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L Q + MG T+N +I C +G I +A L+ M
Sbjct: 510 KAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMG 569
Query: 205 HGKIPSRTSHDMLI 218
G + +++ LI
Sbjct: 570 KGILADIITYNALI 583
>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 526
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 17/117 (14%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M GR++EA +M ++ G PDV YT++++GFCK + +AM++ E ++G+T N +
Sbjct: 293 MEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTI 352
Query: 160 TLIQLLQRLEM-----------GHI------PRTITFNNVIQALCGVGKIHKALLLL 199
T L+Q + GH+ P T+N ++ LC GK++KAL++
Sbjct: 353 TYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIF 409
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L + +KPDV T+ A++D F K G+ +A EL NE I+ + N+ T
Sbjct: 225 GRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTY 284
Query: 162 IQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L M G P + + ++I C K+ A+ + + M +
Sbjct: 285 TSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQ 344
Query: 205 HGKIPSRTSHDMLIK 219
G + ++ LI+
Sbjct: 345 KGLTGNTITYTTLIQ 359
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+EEA M+ + G+KPDV YT I+D CK G + A+ L N+ G+ +VV
Sbjct: 156 RIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYT 215
Query: 163 QLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G P ITFN +I A GK+ A L M +
Sbjct: 216 SLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQM 275
Query: 206 GKIPSRTSHDMLIKKL 221
P+ ++ LI L
Sbjct: 276 SIAPNIFTYTSLINGL 291
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
E +D+F+ + + S+ DF LL + + + D + HL + M
Sbjct: 52 FNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINL-CKHLQI----------M 100
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------- 165
V ND +YT +M+ FC+ + A L + ++ G ++ T L+
Sbjct: 101 GVSND-----LYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGN 155
Query: 166 ----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q +EMG P + + +I +LC G + AL L M +G P +
Sbjct: 156 RIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYT 215
Query: 216 MLIKKL 221
L+ L
Sbjct: 216 SLVNGL 221
Score = 36.6 bits (83), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G+V++A + ++ + G+KP+V TYT ++ G + G EA L + E GV+
Sbjct: 473 GKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526
>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
Length = 378
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----NHL----- 99
KA +E IF+++K+ G +N ++ + D A + H+
Sbjct: 71 KAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVA 130
Query: 100 ----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ R++EAY + K+ G++ +V Y++++DGF KVGR +EA +L E
Sbjct: 131 TYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEM 190
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+++G+ NV T L+ L EM P T T++ +I LC V K
Sbjct: 191 MKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKY 250
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+KA + M + G +P+ ++ +I L
Sbjct: 251 NKAFVFWQEMQKQGLVPNVVTYTTMISGL 279
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR++EAY +L + GL P+VYT+ ++MD K NEA+ E + N T
Sbjct: 177 VGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYT 236
Query: 161 ---LIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI L R++ G +P +T+ +I L VG I A L
Sbjct: 237 YSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFK 296
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
+G IP S + LI+ +
Sbjct: 297 ANGGIPDAASFNALIEGMSH 316
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------ 154
G VE+ + ++K G PDV +Y+ ++ G K G++ E + + +RG
Sbjct: 37 AGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARA 96
Query: 155 ----------TQNVVTLIQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLL 199
+ V + L+ +++ H+P T+ T+ ++I L + ++ +A +L
Sbjct: 97 YNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLF 152
Score = 37.0 bits (84), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 39/158 (24%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K + E I + K G +V +N L+ ALV E + A+ F
Sbjct: 176 KVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTY 235
Query: 97 ------NHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L V + +A+ ++ GL P+V TYT ++ G KVG
Sbjct: 236 TYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVG------------ 283
Query: 150 IERGVTQNVVTLIQLLQRLEM-GHIPRTITFNNVIQAL 186
N+ L +R + G IP +FN +I+ +
Sbjct: 284 -------NITDACSLFERFKANGGIPDAASFNALIEGM 314
>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Vitis vinifera]
Length = 450
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 34/219 (15%)
Query: 32 LKENPRSLQ--AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
L NP++ +R+V A I IF S+ + G ++ FN +L L +
Sbjct: 132 LGPNPKTFAIITERYVS---AGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCKSKRVE 188
Query: 90 TA----VKFFSNHLMV--------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
A K F + G+++EA+E + +K + DV TYT ++ GF G
Sbjct: 189 MADNKLFKVFRGRFRILLKGFFRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAG 248
Query: 138 RSNEAMELLNEAIERGVTQNVVT---LIQLLQR--------------LEMGHIPRTITFN 180
+A + NE I GV +V T IQ+L + L G++P + T+N
Sbjct: 249 EVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYN 308
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
VI+ LC VG++ KA+ + M + P+ ++++I+
Sbjct: 309 VVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIR 347
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 26/197 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
+AQR +++ + + +N+ KKD ++S F ++L M N V
Sbjct: 252 KAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNV-V 310
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
VGR+E+A E + +K+D +P+V Y ++ FC + + + + +
Sbjct: 311 IRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADC 370
Query: 155 TQNVVT---LIQ-----------------LLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
N+ T LI L++ +E G +PR TFN V+ L G
Sbjct: 371 LPNLDTYNILISAMFVRKKSDYLLTAGKLLIEMVERGFLPRKFTFNRVLDGLLLTGNQDF 430
Query: 195 ALLLLFLMYEHGKIPSR 211
A +L L G++P R
Sbjct: 431 AKEILRLQSRCGRLPRR 447
>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
lycioides]
Length = 397
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+FN+I K G SV FN L+ + ++ +G ++E + + + G
Sbjct: 147 VFNAITKWGLRPSVVSFNTLM----------------NGYIRLGDMDEGFRLKNAMHASG 190
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A E+ +E +++G+ N VT L+
Sbjct: 191 VQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAM 250
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 251 EIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 307
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 22/153 (14%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V ++ +M+G+ ++G +E L N
Sbjct: 126 YFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNA 185
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
GV +V T L+ + L+ G +P +TF +I C G+
Sbjct: 186 MHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGR 245
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 246 VDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKK 278
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 279 GDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAY 338
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + L +G P T T+ +I C G + LL
Sbjct: 339 TALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLL 393
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G EEA ++L N+ +DGL PD TYT+I++GF K G +A E+ NE + +GV +VVT
Sbjct: 509 GNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTY 568
Query: 162 IQLL------QRLEMGHI-----------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q L++ + IT+N +I LC ++ +A M E
Sbjct: 569 TVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEE 628
Query: 205 HGKIPSRTSHDMLIKK 220
G +P++ S+ +LI +
Sbjct: 629 KGILPNKFSYTILINE 644
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG------ 153
M G ++ A + + + GL PD++TYT +++G K+G + A NE + +G
Sbjct: 402 MWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRF 461
Query: 154 -----------VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ V + L G P IT+N + ALC G +A LL M
Sbjct: 462 AYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENM 521
Query: 203 YEHGKIPSRTSHDMLI 218
G IP ++ +I
Sbjct: 522 VSDGLIPDHVTYTSII 537
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------ 165
G+KP V TY ++D +CK GR ++A+ELL+E ERG N VT L+
Sbjct: 210 GIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQA 269
Query: 166 -----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+ L G T+N +I C G +A L+ M P+ ++++ L+
Sbjct: 270 KGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYG 329
Query: 221 L 221
L
Sbjct: 330 L 330
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER--------- 152
G +E+A ++ + N GL YTY +++GFC+ G EA +L+ E + R
Sbjct: 264 GELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTY 323
Query: 153 -----GVTQNV-VTLIQLL--QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
G+ + V VT ++L L+ P ++FN+++ C G I +A LL +
Sbjct: 324 NTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKC 383
Query: 205 HGKIPSRTSHDMLIKKL 221
+P+ +++ LI L
Sbjct: 384 RDLVPTVITYNTLIHGL 400
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 27/182 (14%)
Query: 15 LLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDK-IKASPLKERIDIFNSIKKD 66
+ V + + + E+ DL EN P + ++ +K L++ ++FN +
Sbjct: 500 VFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSK 559
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------------MVGRVEEA 107
G SV + L+ A D A +FS L M R++EA
Sbjct: 560 GVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEA 619
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y+ ++ G+ P+ ++YT +++ C +G EA+ L E ++R + + T L+
Sbjct: 620 YKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKN 679
Query: 168 LE 169
L
Sbjct: 680 LH 681
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
PD+ ++ +++ G+C+ G +EA L +E R + +P IT
Sbjct: 351 FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDL------------------VPTVIT 392
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+N +I LC G + AL L M + G P ++ +L+
Sbjct: 393 YNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILV 432
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ G P +T+N ++ + C G++ +AL LL M E G P+ ++++L+ L ++
Sbjct: 208 QFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKK 263
>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
Length = 795
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 85 LNEQDTAVKFFSNHL-MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
L E + + F N+L GR+EEA E+ ++ + GL PD YT++MDGF K G+ ++A
Sbjct: 328 LEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAF 387
Query: 144 ELLNEAIERGVTQNVVT---LIQLLQRL-------------EMGHIPRTITFNNVIQALC 187
+ E E+ +VV LI L +L ++G P + TFN +I A C
Sbjct: 388 NIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMINAYC 447
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G + AL LL M +G P+ + ++L+++L
Sbjct: 448 KEGNLGNALKLLNEMKSYGLKPNSITCNILVQRL 481
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A E+L +K +G PD+ TY +M+GFCK+G A +L+ E + NV+T
Sbjct: 31 GEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITY 90
Query: 162 IQLL------QRLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q LE +P +T+ ++ LC GK+ +A + M E
Sbjct: 91 TTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEE 150
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P+R S+ LI L ++
Sbjct: 151 VGVVPNRFSYATLIDSLFKE 170
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VEEA + ++ G+ P+ ++Y ++D K G EA L + RG+ +VV
Sbjct: 136 GKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVY 195
Query: 162 IQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ LE +P +T++ +I C +G ++K LLL M E
Sbjct: 196 TALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEE 255
Query: 205 HGKIPS 210
P+
Sbjct: 256 KHIFPN 261
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 37/179 (20%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
+S LK+ + + + +G + +V +N LL L +A + ++EA
Sbjct: 589 SSHLKKAFAVHSQMLTEGVSPNVETYNILLGGL-------SAARL---------IKEAAG 632
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
++ +K GL P+ TY ++ G K+G E ++L E I +G
Sbjct: 633 LVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGF--------------- 677
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI---KKLDQQP 225
+P+T T+N +I K+ +A L+ M G P+ +++D+LI KL +QP
Sbjct: 678 ---VPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQP 733
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 20/143 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G V EA+ + + G+ DV YTA+MDG K G +N A ++ +E + N VT
Sbjct: 171 GNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTY 230
Query: 161 --LIQ-------------LLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI LLQ +E HI P I +++++ G +++A+ ++ M +
Sbjct: 231 SALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQ 290
Query: 205 HGKIPSRTSHDMLIK---KLDQQ 224
+P+ + LI K DQ+
Sbjct: 291 RNILPNVFVYGTLIDGYFKADQR 313
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 9/158 (5%)
Query: 9 PTPFS-VLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDG 67
P FS L+DS + + AE+ L+ R V + + + + + K G
Sbjct: 155 PNRFSYATLIDSLFKEGNVAEAFVLQ--------GRMVVRGIGFDVVVYTALMDGLFKAG 206
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+ D +L+ ++ T H +G V + +L ++ + P+V Y+
Sbjct: 207 MANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYS 266
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+I+DG+ K G NEAM+++ + ++R + NV L+
Sbjct: 267 SIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLI 304
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 20/151 (13%)
Query: 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
L+ +T + F M+ R ++ +M G+ D+ TY A++ G+C +A
Sbjct: 541 LSTYNTLISTFCRLGMIRRATLVFKDMMG---KGILADIITYNALIHGYCISSHLKKAFA 597
Query: 145 LLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALC 187
+ ++ + GV+ NV T LL Q E G +P T++ ++
Sbjct: 598 VHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHG 657
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+G + + + L M G +P ++++LI
Sbjct: 658 KIGNMKECVKLYCEMITKGFVPKTRTYNVLI 688
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A ++L +K+ GLKP+ T ++ C G + M+LLN+ + G T
Sbjct: 450 GNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTH 509
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L Q + MG T+N +I C +G I +A L+ M
Sbjct: 510 KAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMG 569
Query: 205 HGKIPSRTSHDMLI 218
G + +++ LI
Sbjct: 570 KGILADIITYNALI 583
>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rehmannii]
Length = 420
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 38/188 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
I+ +PL +F++I K G SV +N L+ + ++ +G ++E
Sbjct: 147 IRVAPL-----VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEG 185
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK ++A EL +E + +G+ N VT L+
Sbjct: 186 FRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDG 245
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L +P IT+N ++ LC G +++A L+ M G P
Sbjct: 246 HCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPD 305
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 306 KFTYTTLI 313
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A+ ++ + GLKPD +TYT ++DG CK G + A E I+ + + V
Sbjct: 285 GDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAY 344
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ +I C G + K LL M
Sbjct: 345 TALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 404
Query: 205 HGKIPSRTSHDMLI 218
+G +P ++++L+
Sbjct: 405 NGHVPXVVTYNVLM 418
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 17/152 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T H GRV+ A E+ + + L PD+ TY ++ G CK G N+A L++E
Sbjct: 238 TFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEM 297
Query: 150 IERGVTQNVVTLIQLLQRL--------EMGHIPRTI---------TFNNVIQALCGVGKI 192
+G+ + T L+ H R I + +I LC G+
Sbjct: 298 XXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRS 357
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A +L M G P ++ M+I + ++
Sbjct: 358 XDAEKMLREMLSVGLKPDTGTYTMIINEFCKK 389
>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 418
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+SI K G SV FN L+ + ++ +G ++E + + ++ G
Sbjct: 158 VFDSITKWGLRPSVVSFNTLM----------------NGYIKIGDLDEGFRLKSVMQASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A L +E ++ G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 EIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + ++ GL+P V ++ +M+G+ K+G +E L +
Sbjct: 137 YFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSV 196
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
GV +V T L+ + L+ G +P +TF +I C G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 257 VDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKK 289
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G NVVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPNVVT 418
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +P+
Sbjct: 410 DGYLPN 415
>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
Length = 645
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G VE+A E+L + +G PD+ +Y+ ++DG K G ++EA+ELLN +++G++ N +
Sbjct: 476 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIY 535
Query: 161 ---------------LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+IQ+ + ++ + + +N VI +LC G+ +A+ L M
Sbjct: 536 SSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVS 595
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P+ +++ +LI+ L +
Sbjct: 596 SGCVPNESTYTILIRGLASE 615
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V F + +V RV E E ++ G PDV TYT +++GFCK G +EA+ LL
Sbjct: 364 VDFLCQNGLVDRVIEVLEQMLE---HGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAA 420
Query: 152 RGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHK 194
G N V+ +L Q ++ G P +TFN +I LC G + +
Sbjct: 421 CGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQ 480
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL M +G P S+ +I L +
Sbjct: 481 AIELLKQMLVNGCSPDLISYSTVIDGLGK 509
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-----GVTQN 157
R+E A +L + + GL P+V Y ++ G C R EA LL E ++ VT N
Sbjct: 302 RLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFN 361
Query: 158 VVT-----------LIQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++ +I++L Q LE G +P IT+ VI C G I +A++LL M
Sbjct: 362 ILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAAC 421
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ S+ +++K L
Sbjct: 422 GCRPNTVSYTIVLKGL 437
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 32/191 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+AS + + + + G V + N +L A+ D AV+ + L
Sbjct: 157 CRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLL-------- 208
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ G +PDV +Y A++ G C R +L+ E + G N+VT L+
Sbjct: 209 -------PSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGH 261
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L E G P + +I +C ++ A +L M +G P+
Sbjct: 262 LCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPN 321
Query: 211 RTSHDMLIKKL 221
++ L+K L
Sbjct: 322 VVCYNTLLKGL 332
>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Vitis vinifera]
Length = 835
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 85 LNEQDTAVKFFSNHL-MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
L E + + F N+L GR+EEA E+ ++ + GL PD YT++MDGF K G+ ++A
Sbjct: 328 LEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAF 387
Query: 144 ELLNEAIERGVTQNVVT---LIQLLQRL-------------EMGHIPRTITFNNVIQALC 187
+ E E+ +VV LI L +L ++G P + TFN +I A C
Sbjct: 388 NIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMINAYC 447
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G + AL LL M +G P+ + ++L+++L
Sbjct: 448 KEGNLGNALKLLNEMKSYGLKPNSITCNILVQRL 481
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A E+L +K +G PD+ TY +M+GFCK+G A +L+ E + NV+T
Sbjct: 31 GEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITY 90
Query: 162 IQLL------QRLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q LE +P +T+ ++ LC GK+ +A + M E
Sbjct: 91 TTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEE 150
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+R S+ LI L
Sbjct: 151 VGVVPNRFSYATLIDSL 167
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VEEA + ++ G+ P+ ++Y ++D K G EA L + RG+ +VV
Sbjct: 136 GKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVY 195
Query: 162 IQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ LE +P +T++ +I C +G ++K LLL M E
Sbjct: 196 TALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEE 255
Query: 205 HGKIPS 210
P+
Sbjct: 256 KHIFPN 261
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 37/179 (20%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
+S LK+ + + + +G + +V +N LL L +A + ++EA
Sbjct: 589 SSHLKKAFAVHSQMLTEGVSPNVETYNILLGGL-------SAARL---------IKEAAG 632
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
++ +K GL P+ TY ++ G K+G E ++L E I +G
Sbjct: 633 LVNQMKERGLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGF--------------- 677
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI---KKLDQQP 225
+P+T T+N +I K+ +A L+ M G P+ +++D+LI KL +QP
Sbjct: 678 ---VPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQP 733
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 20/143 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G V EA+ + + G+ DV YTA+MDG K G +N A ++ +E + N VT
Sbjct: 171 GNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTY 230
Query: 161 --LIQ-------------LLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI LLQ +E HI P I +++++ G +++A+ ++ M +
Sbjct: 231 SALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQ 290
Query: 205 HGKIPSRTSHDMLIK---KLDQQ 224
+P+ + LI K DQ+
Sbjct: 291 RNILPNVFVYGTLIDGYFKADQR 313
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 9/158 (5%)
Query: 9 PTPFS-VLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDG 67
P FS L+DS + + AE+ L+ R V + + + + + K G
Sbjct: 155 PNRFSYATLIDSLFKEGNVAEAFVLQ--------GRMVVRGIGFDVVVYTALMDGLFKAG 206
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+ D +L+ ++ T H +G V + +L ++ + P+V Y+
Sbjct: 207 MANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYS 266
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+I+DG+ K G NEAM+++ + ++R + NV L+
Sbjct: 267 SIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLI 304
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 20/151 (13%)
Query: 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
L+ +T + F M+ R ++ +M G+ D+ TY A++ G+C +A
Sbjct: 541 LSTYNTLISTFCRLGMIRRATLVFKDMMG---KGILADIITYNALIHGYCISSHLKKAFA 597
Query: 145 LLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALC 187
+ ++ + GV+ NV T LL Q E G +P T++ ++
Sbjct: 598 VHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHG 657
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+G + + + L M G +P ++++LI
Sbjct: 658 KIGNMKECVKLYCEMITKGFVPKTRTYNVLI 688
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A ++L +K+ GLKP+ T ++ C G + M+LLN+ + G T
Sbjct: 450 GNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTH 509
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L Q + MG T+N +I C +G I +A L+ M
Sbjct: 510 KAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMG 569
Query: 205 HGKIPSRTSHDMLI 218
G + +++ LI
Sbjct: 570 KGILADIITYNALI 583
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA+E++ + G++PDV TYT +MDG C +EA+++ + + +G +V++
Sbjct: 280 GKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISY 339
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ H IP T T+N ++ LC VG++ A+ L M
Sbjct: 340 TTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVA 399
Query: 205 HGKIPSRTSHDMLIKKL 221
G++P ++ +L+ L
Sbjct: 400 RGQMPDLVTYSILLDSL 416
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG A +L +++ +PDV YT+I+D CK + EA L ++ + +G++ ++ T
Sbjct: 174 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 233
Query: 161 LIQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E H+ P + F+ V+ ALC GK+ +A ++ +M
Sbjct: 234 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 293
Query: 204 EHGKIPSRTSHDMLI 218
+ G P ++ L+
Sbjct: 294 QRGVEPDVVTYTTLM 308
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV A+ +L + G +PD T+T ++ G C G+ EA+ L ++ I+ G NVVT
Sbjct: 106 RVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYG 165
Query: 162 ---------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
I+LL+ +E G+ P + + ++I +LC ++ +A L M
Sbjct: 166 TLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ 225
Query: 206 GKIPSRTSHDMLIKKL 221
G P ++ L+ L
Sbjct: 226 GISPDIFTYTSLVHAL 241
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G+ P+VYT +++ FC + R A +L + L++GH P
Sbjct: 86 GVPPNVYTLNILINSFCHLNRVGFAFSVLAKI------------------LKLGHQPDPT 127
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TF +I+ LC GKI +AL L M + G P+ ++ LI L
Sbjct: 128 TFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGL 171
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------------- 148
G +E A ++ N+ + GL P V+TY ++ G CK G NEA +L E
Sbjct: 455 GELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTY 514
Query: 149 -AIERGVTQNVVTL--IQLLQRL 168
I RG QN TL IQLL+ +
Sbjct: 515 NTIARGFLQNNETLRAIQLLEEM 537
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 37/190 (19%)
Query: 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------------- 96
S + E + +F+ + + G V + L+ +++ D A+ F
Sbjct: 315 SEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTY 374
Query: 97 NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N LM VGR+++A + + G PD+ TY+ ++D CK EAM LL +AIE
Sbjct: 375 NTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALL-KAIE 433
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
N+ IQ+ +N +I +C G++ A L + G PS
Sbjct: 434 ---ASNLNPDIQV--------------YNIIIDGMCRAGELEAARDLFSNLSSKGLHPSV 476
Query: 212 TSHDMLIKKL 221
+++++I L
Sbjct: 477 WTYNIMIHGL 486
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 41/170 (24%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGR---------------------VEEAYEMLMN 113
+N L+ L + A+ F H MV R +EEA +L
Sbjct: 374 YNTLMHGLCHVGRLQDAIALF--HEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKA 431
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
++ L PD+ Y I+DG C+ G A +L + +G+
Sbjct: 432 IEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLH------------------ 473
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P T+N +I LC G +++A L M + P +++ + + Q
Sbjct: 474 PSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQ 523
Score = 42.7 bits (99), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 19/139 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
K L+E + + +I+ N + +N ++ + E + A FSN
Sbjct: 418 KNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVW 477
Query: 98 --HLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++M+ G + EA ++ M + + PD TY I GF + + A++LL E
Sbjct: 478 TYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEM 537
Query: 150 IERGVTQNVVTLIQLLQRL 168
+ RG + +V T L++ L
Sbjct: 538 LARGFSADVSTTTLLVEML 556
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 33/183 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+KE +++FN + K G +V + ++ L AV F
Sbjct: 179 IKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKK--------------- 223
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMG 171
++ +G KP+V TY+ I+D CK N+AME L+E +ERG+ NV T ++ +G
Sbjct: 224 -MEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLG 282
Query: 172 HI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+ P T+TF ++ LC G + +A L+ M E G P ++++
Sbjct: 283 QLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYN 342
Query: 216 MLI 218
L+
Sbjct: 343 ALM 345
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA E+ + G +P+V +YT +++G CK G ++ A+++ + + G NVVT
Sbjct: 177 GKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTY 236
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L E G P T+N+++ C +G++++A L M
Sbjct: 237 STIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVG 296
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+P+ + +L+ L ++
Sbjct: 297 RDVMPNTVTFTILVDGLCKE 316
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 37/223 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ VD + K + E +F ++ + G +S +N L+ + + A K
Sbjct: 301 PNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKV 360
Query: 95 FS--------------NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
F N L+ G R++EA +L + + L PD TY+ +M G C+
Sbjct: 361 FEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQ 420
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI----------------PRTIT 178
+GR EA+ L E G N+VT + LL + GH+ P +
Sbjct: 421 LGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVH 480
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +I+ + GK+ A L ++ G P ++ ++IK L
Sbjct: 481 YTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGL 523
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL---------------- 161
G+ PD T+ A+++G C G+ EA+EL NE ++RG NV++
Sbjct: 158 GIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMA 217
Query: 162 IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ + +++E G P +T++ +I +LC ++ A+ L M E G P+ +++ ++
Sbjct: 218 VDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIV 275
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+ G++E A E+ + DG +PD+ TYT ++ G K G S+EA +L + + G N
Sbjct: 489 FIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNS 548
Query: 159 VTLIQLLQ 166
+ ++Q
Sbjct: 549 CSYNVMIQ 556
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL---IQLLQRL-------- 168
+P V + + F K + + + L N+ VT NV +L I L RL
Sbjct: 90 RPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVS 149
Query: 169 ------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++G P ITFN +I LC GKI +A+ L M + G P+ S+ +I L
Sbjct: 150 VLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGL 208
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 17/120 (14%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A L+ ++F+ + DGT + + ++ L L G +EAY+
Sbjct: 491 AGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGL----------------LKEGLSDEAYD 534
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
+ +++DG P+ +Y ++ GF + S+ A+ L++E + + + N+ T Q+L LE
Sbjct: 535 LFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTF-QMLLDLE 593
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA E+ +K+ GLKPD YT +++ FC VGR +EAMELL E E + VT
Sbjct: 320 GRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTF 379
Query: 162 IQLLQRL-EMGHIPRTI----------------TFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+ L G + ++ V+ LC G++ K+ LL LM
Sbjct: 380 NVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLCQKGELEKSCALLGLMLS 439
Query: 205 HGKIPSR-TSHDMLI 218
G +P TS+++L+
Sbjct: 440 RGFVPHYATSNELLV 454
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ + A +++ ++++G P+V+ Y+ +M+GFCK GR EA E+ +E G+
Sbjct: 285 GKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLK------ 338
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+ + +I CGVG+I +A+ LL M E + ++L+K L
Sbjct: 339 ------------PDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGL 386
Query: 222 DQQ 224
++
Sbjct: 387 CRE 389
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 33/194 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K L+E ++F+ +K G + L+ VGR++EA
Sbjct: 317 CKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCG----------------VGRIDEA 360
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV----VTLIQ 163
E+L + K D T+ ++ G C+ GR +EA+ +L GV N + L
Sbjct: 361 MELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNF 420
Query: 164 LLQRLEM-------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L Q+ E+ G +P T N ++ LC G + A+ LF + + G P
Sbjct: 421 LCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAVTALFGLTQMGFTPE 480
Query: 211 RTSHDMLIKKLDQQ 224
S LI+ + ++
Sbjct: 481 PKSWAHLIEYICRE 494
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLK-PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+H G +E A E++ +K P+V TY+ ++DG C GR EA+EL E + +
Sbjct: 208 HHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKD-- 265
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q+L P +T++ +I+ C GK +A ++ M +G P+ ++
Sbjct: 266 -------QIL--------PDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYS 310
Query: 216 MLI 218
+L+
Sbjct: 311 VLM 313
>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
Length = 1098
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ + +GR+ EA+ +L + G++PD Y+Y +++DG+CK G N+A E N + G
Sbjct: 392 NGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFA 451
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
T+T+N +++ C +G I AL L FLM + G P+ S
Sbjct: 452 AT------------------TLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCS 493
Query: 216 MLI 218
L+
Sbjct: 494 TLL 496
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR+E+A +L ++K+ G D +TY++++ G G + A +L + + G+T N+VT
Sbjct: 738 LGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVT 797
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ L ++L I P IT+N +I C G I +A L M
Sbjct: 798 YNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMI 857
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
E G P+ ++ +LI L Q
Sbjct: 858 EEGIHPTVFTYSILINGLCTQ 878
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN------------------- 97
D+ +++ G ++ +N L+ L E AV F
Sbjct: 780 FDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDK 839
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H G + EA+++ + +G+ P V+TY+ +++G C G EA++LL++ IE V N
Sbjct: 840 HCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIENNVDPN 899
Query: 158 VVTLIQLLQ---RLEMGHIP 174
VT L+Q R E +P
Sbjct: 900 YVTYWTLIQGYVRCESVDVP 919
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 25/131 (19%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ R+ EA E++ +K PD+ TY + G+CK+G + A +LNE G
Sbjct: 537 IERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPT--- 593
Query: 161 LIQLLQRLEMGHI---------------------PRTITFNNVIQALCGVGKIHKALLLL 199
I+ L GH P T+ + +I C G +H A L
Sbjct: 594 -IEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLY 652
Query: 200 FLMYEHGKIPS 210
M E G +P+
Sbjct: 653 LEMIEKGLVPN 663
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 35/161 (21%)
Query: 36 PRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P + VD K + + + +N++ ++G + +N LL L D A++
Sbjct: 417 PDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRL 476
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ LM+ + G+ P+ + + ++DGF K G++ +A+ L E + RG+
Sbjct: 477 W--FLMLKK--------------GIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGL 520
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
+N T TFN VI LC + ++ +A
Sbjct: 521 AKN------------------TTTFNTVINGLCKIERMPEA 543
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 57/234 (24%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT-----A 91
R +A+ VDK+K I + ++ D+ A +LNE +
Sbjct: 539 RMPEAEELVDKMKQWRCPPDIITYRTLFS-----GYCKIGDMDRASRILNELENLGFAPT 593
Query: 92 VKFF----SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
++FF + H + + + ++L + N GL P+ Y A++ G+CK G + A L
Sbjct: 594 IEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYL 653
Query: 148 EAIERGVTQNVVTLIQLLQ------------------------------RLEMG------ 171
E IE+G+ N+ L+ RLE+G
Sbjct: 654 EMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISAPRLEIGKVANFI 713
Query: 172 -------HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
H I +N VI LC +G+I A LL + + G + ++ LI
Sbjct: 714 DTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLI 767
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 37/187 (19%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN------------ 97
A L + +F+ ++ G S+ N +L L + V F
Sbjct: 186 AGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQMQRAGALPDKFT 245
Query: 98 -------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
+ V V A E + + G++ ++ Y A+M+G+C+VG++N+A +L+
Sbjct: 246 VAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLP 305
Query: 151 ERGVTQNVVTLIQLLQ------------------RLEMGHIPRTITFNNVIQALCGVGKI 192
RG + N+VT L++ R + F VI C +G++
Sbjct: 306 GRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRM 365
Query: 193 HKALLLL 199
A LL
Sbjct: 366 EDAARLL 372
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-----------------RL 168
+ ++ G CK+GR +A LL + ++G + T L+ L
Sbjct: 728 WNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTML 787
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+G P +T+N++I LC G++ +A+ L ++ G P+ +++ LI K
Sbjct: 788 SVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDK 839
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 20/117 (17%)
Query: 103 RVEEAYEML--MNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
R+ EAYE+ M ++ DG KPDV TYTA++DGFCK G +AM++L R NVV
Sbjct: 166 RIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVV 225
Query: 160 TLIQLL----------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLL 199
T LL Q L++ G +P +T+ +I LC K+ A LL+
Sbjct: 226 TYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLM 282
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 61/122 (50%), Gaps = 22/122 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV A E+L NV KPDV TYT +++G C R+ EA+ LL E + +
Sbjct: 414 GRVNHAMEVLKNVD----KPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNK--------- 460
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
R+E P TFN+VI ALC +G + +A LL M HG P ++ L++
Sbjct: 461 -----RVE----PSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGF 511
Query: 222 DQ 223
+
Sbjct: 512 SR 513
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 17/144 (11%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
V+ F N R+EEA +L N+K G+ PDV TY+ ++ G+ + R EA E + E I
Sbjct: 336 VRGFCN---ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMI 392
Query: 151 ERGVTQNVVTLIQLLQRL-EMGHI------------PRTITFNNVIQALCGVGKIHKALL 197
R V N VT L+ L + G + P +T+ VI+ LCG + +AL
Sbjct: 393 ARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALT 452
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
LL M PS + + +I L
Sbjct: 453 LLEEMVNKRVEPSVGTFNSVIGAL 476
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A +ML ++ P+V TY++++ G CK G ++A++L +G NVVT
Sbjct: 203 GNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTY 262
Query: 162 IQLLQRLEMGH----------------IPR-TITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L H P T+++N ++ C +G+I +A L M
Sbjct: 263 TTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAA 322
Query: 205 HGKIPSRTSHDMLIK 219
+P R ++ L++
Sbjct: 323 KSCLPDRITYTCLVR 337
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G+++ A EM+ +K G++PD +T++A++ G+C + +EA++L E + + V+
Sbjct: 95 GKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSS 154
Query: 161 ---------------LIQLLQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
+L Q +EM P +T+ +I C G + KA+ +L +
Sbjct: 155 SALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGV 214
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M +P+ ++ L+ L
Sbjct: 215 MEGRKCVPNVVTYSSLLHGL 234
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 97 NHLMVGRV-EEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
N L R+ +AYE+L +++ + PD+ TY+ +++GFCK G + A E+L E + R
Sbjct: 17 NGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRD- 75
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
G P +T+ +V+ LC GK+ +A ++ M G P + +
Sbjct: 76 ----------------GMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTF 119
Query: 215 DMLI 218
LI
Sbjct: 120 SALI 123
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 37/189 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV--------------- 92
KA L + +D+F + G +V + L+ L ++ D A
Sbjct: 235 CKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADT 294
Query: 93 ----KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL-N 147
+ +GR+EEA ++ + PD TYT ++ GFC R EA LL N
Sbjct: 295 VSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLEN 354
Query: 148 EAIERGVTQNVVTL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVG 190
G+ +VVT + +Q + ++ P +T++++I LC G
Sbjct: 355 MKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAG 414
Query: 191 KIHKALLLL 199
+++ A+ +L
Sbjct: 415 RVNHAMEVL 423
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 19/98 (19%)
Query: 102 GRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++ A E+L V DG+ PDV TYT+++DG C+ G+ + A E++ E +GV
Sbjct: 59 GEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVE----- 113
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
P TF+ +I C K+ +AL L
Sbjct: 114 -------------PDKFTFSALITGWCNARKVDEALKL 138
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 27/129 (20%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
SV FN ++ AL L + D EA+++L+ + GL+P + TYT ++
Sbjct: 465 SVGTFNSVIGALCRLGDMD----------------EAWKLLVAMAAHGLEPGMVTYTTLL 508
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190
+GF + GR A EL E + R ++ +P F+ +I+ LC
Sbjct: 509 EGFSRTGRMEIAYELF-EVMRRKAKKSSSA---------ANLVPEQ-AFSALIRGLCKAR 557
Query: 191 KIHKALLLL 199
+I KA+ ++
Sbjct: 558 EIDKAMAVV 566
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 23/164 (14%)
Query: 84 MLNEQDTAVKFFSNHL----MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
+LN QDT V +S + G++ EA E+ ++ G PD +TY +++G CK +
Sbjct: 83 LLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQL 142
Query: 140 NEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EMGH---IPRTITFNNV 182
+ L++E RG + VVT L+ EM H P T+T+ +
Sbjct: 143 EMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTAL 202
Query: 183 IQALCGVGKIHKALLLLFLMYEHGK--IPSRTSHDMLIKKLDQQ 224
IQ LC G++ +A+L+L M G P+ ++ LI L Q+
Sbjct: 203 IQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQK 246
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 25/165 (15%)
Query: 85 LNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
+ E+ +A F+ ++++ ++E ++ ++ G P V TYT ++ GFC GR
Sbjct: 117 MEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGR 176
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI------------------PRTITF 179
+ AM++L+E RG+T N VT L+Q L + G + P +T+
Sbjct: 177 VDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTY 236
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+I LC G + L M G P+ ++ LI L Q+
Sbjct: 237 TQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQK 281
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G E E L + G P+ TYTA++ G C+ G EA LLNE + G +VV
Sbjct: 247 GLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIY 306
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G P T+ ++IQ LC G + +AL L+ M
Sbjct: 307 NSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRA 366
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G +P+ ++ LI Q
Sbjct: 367 KGIVPNSVTYTTLINGFTQ 385
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + AY +L + + GL PD +TYT+++D CK R EA +L + ++GV NVV
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMY 535
Query: 162 IQLLQ------RLEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ +++ H +P ++TFN +I LC GK+ +A LL M +
Sbjct: 536 TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVK 595
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ ++ +LI +L
Sbjct: 596 IGLQPTVSTDTILIHRL 612
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 38/188 (20%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A + E +D+F +K D +V + L+ +L R EA
Sbjct: 301 ARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSE----------------RKSEALN 344
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--------- 160
++ ++ G+KP+++TYT ++D C + +A ELL + +E+G+ NV+T
Sbjct: 345 LVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYC 404
Query: 161 ----------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+++L++ ++ P T T+N +I+ C +HKA+ +L M E +P
Sbjct: 405 KRGMIEDAVDVVELMESRKLS--PNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPD 461
Query: 211 RTSHDMLI 218
+++ LI
Sbjct: 462 VVTYNSLI 469
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T K + + +G VEEA + + + GL PD +TYT+++ G+C+ + A ++ NE
Sbjct: 220 TYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM 279
Query: 150 IERGVTQNVVTLIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKI 192
+G +N V L+ L + P T+ +I++LCG +
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERK 339
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+AL L+ M E G P+ ++ +LI L Q
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDSLCSQ 371
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+E ++ M + D + P++YTY +++G+CK+G EA + +++ +E G+ + T
Sbjct: 197 GLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTY 256
Query: 162 IQLLQRLEMGHIPRT---------------------ITFNNVIQALCGVGKIHKALLLLF 200
L+ MG+ R + + ++I LC +I +A+ L
Sbjct: 257 TSLI----MGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFV 312
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M + P+ ++ +LIK L
Sbjct: 313 KMKDDECFPTVRTYTVLIKSL 333
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 41/229 (17%)
Query: 16 LVDSPSRSP---SAAESLDLKEN----PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
L+D RS SA L L + P +D + K+ ++E D+F+S+++ G
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKG 527
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
N +V + L+ + G+V+EA+ ML + + P+ T+
Sbjct: 528 VNPNVVMYTALI----------------DGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFN 571
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR-----------------LEM 170
A++ G C G+ EA L + ++ G+ V T L+ R L
Sbjct: 572 ALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS 631
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G P T+ IQ C G++ A ++ M E+G P ++ LIK
Sbjct: 632 GTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIK 680
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F + GR+ +A +M+ ++ +G+ PD++TY++++ G+ +G++N A ++L
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698
Query: 150 IERGVTQNVVTLIQLLQRL-------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ G + T + L++ L + G P +N+++ + LL M
Sbjct: 699 RDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMME-------FDTVVELLEKM 751
Query: 203 YEHGKIPSRTSHDMLI 218
EH P+ S++ LI
Sbjct: 752 VEHSVTPNAKSYEKLI 767
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A +++ +++ L P+ TY ++ G+CK ++AM +LN+ +ER V
Sbjct: 407 GMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKV------- 458
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P +T+N++I C G A LL LM + G +P + ++ +I L
Sbjct: 459 -----------LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSL 507
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLK----PDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
N L+ G + M V N L+ PDV TY +++DG C+ G + A LL+ +R
Sbjct: 432 NELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR 491
Query: 153 GVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
G+ + T ++ L + G P + + +I C GK+ +A
Sbjct: 492 GLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKL 221
L+L M +P+ + + LI L
Sbjct: 552 HLMLEKMLSKNCLPNSLTFNALIHGL 577
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + AY + + G KPD +TYT + +C+ GR +A +++ + E GV+
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVS------ 669
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T++++I+ +G+ + A +L M + G PS+ + LIK L
Sbjct: 670 ------------PDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHL 717
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 33/193 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+A L E ++ + +++DG +V + L+ AL GR EA
Sbjct: 266 CEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCE----------------SGRELEA 309
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------ 161
+ ++ G +P+VYTYT ++D CK GR +EA+++LNE +E+GV +VV
Sbjct: 310 LSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGS 369
Query: 162 ----------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ +L +E + P T+N +I C + +A+ LL M E P
Sbjct: 370 YCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPD 429
Query: 211 RTSHDMLIKKLDQ 223
+++ LI L +
Sbjct: 430 VVTYNTLIHGLCE 442
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 44/247 (17%)
Query: 4 SAANSPTPFSVLLVDSPSRS--PSAAESLDLKENPRSLQAQRFVDKI-----KASPLKER 56
A S PF+ L+ R A L L E+ + R +++ + +
Sbjct: 355 GVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRA 414
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMV- 101
+ + N + + + V +N L+ L + D+A + F N MV
Sbjct: 415 MALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVC 474
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
GRV EA+++L ++K +K + + YTA++DG+CK G+ A L +
Sbjct: 475 LCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEEC--- 531
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+P +ITFN +I L GK+ A+LL+ M + P+ ++++L
Sbjct: 532 ---------------LPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNIL 576
Query: 218 IKKLDQQ 224
++++ ++
Sbjct: 577 VEEVLKE 583
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 46/175 (26%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F + GR+EEA EM++ +KN+G+ D + Y +++ + +G + A +L
Sbjct: 607 TYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRM 666
Query: 150 IERGVTQNVVTLIQLLQRL----------------------------------------- 168
G + +T L++ L
Sbjct: 667 FGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVL 726
Query: 169 -----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
E G +P T++ +I LC VG+++ A L M E G PS H+ L+
Sbjct: 727 FEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLL 781
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 26/106 (24%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR--TIT 178
PD++TYT+++ G+C+ N+ +ER V +PR ++
Sbjct: 222 PDLFTYTSLVLGYCR-----------NDDVERACGVFCV-------------MPRRNAVS 257
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ N+I LC GK+H+AL M E G P+ ++ +L+ L +
Sbjct: 258 YTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCES 303
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 81/213 (38%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
K + E + + N + + G SV FN L+ + + AV
Sbjct: 336 CKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNV 395
Query: 97 ---NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
N L+ G ++ A +L + L PDV TY ++ G C+VG + A L
Sbjct: 396 RTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRL 455
Query: 149 AIERGVTQN-------VVTLI---------QLLQRLEMGHI-PRTITFNNVIQALCGVGK 191
I G + + +V L Q+L+ L+ H+ + +I C GK
Sbjct: 456 MIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGK 515
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
I A L M +P+ + +++I L ++
Sbjct: 516 IEHAASLFKRMLAEECLPNSITFNVMIDGLRKE 548
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 79/188 (42%), Gaps = 24/188 (12%)
Query: 60 FNSIKKDGTN-WSVSDFNDLLMALVMLNEQ------DTAVKFFSNHLMVGRVEEAYEMLM 112
+I D T+ WS DF + + E +T K + VGR+ A+ +
Sbjct: 704 LTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYH 763
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN-------VVTLIQLL 165
+++ G+ P + +++ CK+G EA+ LL+ +E + + L + +
Sbjct: 764 HMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQM 823
Query: 166 QR----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+ L G+ + + +I L G + + LL LM ++G ++
Sbjct: 824 NKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYS 883
Query: 216 MLIKKLDQ 223
ML+++L++
Sbjct: 884 MLMQELNR 891
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLL----------MALVMLNE------QDTA 91
+KA +E ++F ++K+ G +N + A +L E Q T
Sbjct: 593 VKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTV 652
Query: 92 VKFFS---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
V + S + R++EAY + K++GL+ +V Y++++DGF KVGR +EA ++ E
Sbjct: 653 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEE 712
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
+++G+T NV T LL L + P IT++ +I LC V K
Sbjct: 713 LMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRK 772
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+KA + M + G P+ ++ +I L
Sbjct: 773 FNKAFVFWQEMQKQGLKPNTITYTTMIAGL 802
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF----------SN 97
IK++ L+E D+ ++K + S + L+ AL + E D + F S
Sbjct: 174 IKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSV 233
Query: 98 HLMV---------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
HL GR++ A +L +K++ L D+ Y +D F K G+ + A + +E
Sbjct: 234 HLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHE 293
Query: 149 AIERGVTQNVVTLIQLLQRLEMG-----------------HIPRTITFNNVIQALCGVGK 191
G+ + VT ++ L G ++P +N +I GK
Sbjct: 294 IKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGK 353
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+A LL G IPS +++ ++ L ++
Sbjct: 354 FDEAYSLLERQKARGCIPSVIAYNCILTCLGKK 386
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA +K D P++ TY ++D CK G A ++ + E G+ NV+T+
Sbjct: 387 GRLGEALRTFEEMKKDA-APNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTV 445
Query: 162 IQLLQRL--------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ RL M H P +TF ++I L G++ A L M +
Sbjct: 446 NIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLD 505
Query: 205 HGKIPSRTSHDMLIKKL 221
KIP+ + LIK
Sbjct: 506 SDKIPNAVVYTSLIKSF 522
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 35/174 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K + L E ++IF ++++ +N ++M + G+ +EA
Sbjct: 314 CKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMG----------------YGSAGKFDEA 357
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y +L K G P V Y I+ K GR EA+ E
Sbjct: 358 YSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEE------------------- 398
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ P T+N +I LC G++ A + M E G P+ + +++I +L
Sbjct: 399 MKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRL 452
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++AY + + + P+ YT+++ F K GR + ++ E I RG + ++ L
Sbjct: 491 GRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLL 550
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ + G IP ++++ +I L G + L + M E
Sbjct: 551 NAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKE 610
Query: 205 HGKIPSRTSHDMLI 218
G + +++ I
Sbjct: 611 QGCVLDTHAYNTFI 624
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G + EA + K +G PD +Y AI++G R+ EA ++ E +G + T
Sbjct: 805 AGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKT 864
Query: 161 LIQLLQRLE 169
I LL L+
Sbjct: 865 CIALLDALQ 873
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 39/158 (24%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------HL 99
K + E I + + G +V +N LL ALV E + A+ F N H+
Sbjct: 699 KVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHI 758
Query: 100 M----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
V + +A+ ++ GLKP+ TYT ++ G K G
Sbjct: 759 TYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAG------------ 806
Query: 150 IERGVTQNVVTLIQLLQRLEM-GHIPRTITFNNVIQAL 186
N+ L +R + G +P + ++N +I+ L
Sbjct: 807 -------NIAEASSLFERFKANGGVPDSASYNAIIEGL 837
>gi|224099199|ref|XP_002311400.1| predicted protein [Populus trichocarpa]
gi|222851220|gb|EEE88767.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA+ + + + +F ++ G + ++ FN L+ S H G V +A
Sbjct: 311 KANVMNKAVMVFKVMQDRGVSPNLVTFNTLI----------------SGHCKDGEVHKAR 354
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+L + GLKPD++T+++I+D C+ + ++A+ +E +E G++ N VT L++ L
Sbjct: 355 ELLQMLLELGLKPDIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGISPNAVTYNILIRSL 414
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ G P +FN +IQ+ C +GK+ KA + M G IP+
Sbjct: 415 CLIGDVGRSMKLLKDMRKDGISPDIFSFNALIQSFCRMGKVEKAEKMFVSMSTLGLIPNN 474
Query: 212 TSHDMLIKKL 221
++ L+K L
Sbjct: 475 YTYGALVKAL 484
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 25/141 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR E L + D L DV++Y ++D FCK N+A+ + +RGV+ N+VT
Sbjct: 278 GRGMEGDRYLNQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDRGVSPNLVTF 337
Query: 162 IQLLQRLEMGHI---------------------PRTITFNNVIQALCGVGKIHKALLLLF 200
L+ GH P TF+++I LC + AL
Sbjct: 338 NTLIS----GHCKDGEVHKARELLQMLLELGLKPDIFTFSSIIDCLCRAQQFDDALGCFS 393
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M E G P+ ++++LI+ L
Sbjct: 394 EMVEWGISPNAVTYNILIRSL 414
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 38/164 (23%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117
+IF I G S +N ++ ALV N D A Y + D
Sbjct: 40 EIFGQISFLGITPSTRLYNAVIDALVKSNSLDLA----------------YLKFQQMSAD 83
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
KPD +TY ++ G CK+G +EA+ L+ + G + NV
Sbjct: 84 NCKPDRFTYNMLIHGVCKIGVVDEALRLVKQMEGFGYSANVY------------------ 125
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ N+I C ++ +A F ++E K+ + ++ I+ L
Sbjct: 126 TYTNLIYGFCNAKRVDEA----FRVFETMKLRNVNPNEATIRSL 165
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 21/107 (19%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ ++KDG + + FN L+ + + G+VE+A +M +++ G
Sbjct: 426 LLKDMRKDGISPDIFSFNALIQSFCRM----------------GKVEKAEKMFVSMSTLG 469
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMEL-----LNEAIERGVTQNVVT 160
L P+ YTY A++ ++GR +EA ++ +N + T N+++
Sbjct: 470 LIPNNYTYGALVKALFELGRCDEAKKMFFSMEVNGCVPDSFTCNLIS 516
>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG V++A ++ ++ +PDVYTY +MDG CK R +EA+ LL+E G + VT
Sbjct: 212 VGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVT 271
Query: 161 LIQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L G IP +T+N +I LC GK+ KA+ LL M
Sbjct: 272 FNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMV 331
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+P+ ++ +I L +Q
Sbjct: 332 SSKCVPNVVTYGTIINGLVKQ 352
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R E Y ++ K + P+V T+ ++ CKVG ++A+++ + R +V T
Sbjct: 179 RALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYC 238
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L EM G P +TFN +I LC G + +A L+ M+
Sbjct: 239 TLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLK 298
Query: 206 GKIPSRTSHDMLIKKL 221
G IP+ +++ LI L
Sbjct: 299 GCIPNEVTYNTLIHGL 314
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ +EA + + G + + Y+A++DG C+ G+ ++A+E+L+E +G T N T
Sbjct: 388 GKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTC 447
Query: 162 IQLLQR-LEMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ E G+ R + ++ +I LC GK+ +A+++ M
Sbjct: 448 SSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLG 507
Query: 205 HGKIPSRTSHDMLIKKL 221
G P ++ +I L
Sbjct: 508 KGCKPDVVAYSSMINGL 524
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+EA + + G KPDV Y+++++G G +AM+L NE + +G
Sbjct: 493 GKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQ---- 548
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N ++ LC I +A+ LL M + G P + + ++ L
Sbjct: 549 ------------PDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRML 596
Query: 222 DQQ 224
++
Sbjct: 597 REK 599
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
R++EA +L ++ DG P T+ +++G CK G + A +L++ +G N VT
Sbjct: 249 RIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYN 308
Query: 162 ---------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
I LL R+ +P +T+ +I L G+ +L LM E
Sbjct: 309 TLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEER 368
Query: 206 GKIPSRTSHDMLIKKL 221
G + + LI L
Sbjct: 369 GYCVNEYVYSTLISGL 384
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 81/208 (38%), Gaps = 36/208 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
KA + E + + + ++ DG S FN L+ L + A K N + G
Sbjct: 245 CKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNE 304
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++E+A +L + + P+V TY I++G K GR+ + +L
Sbjct: 305 VTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLAL 364
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
ERG N L+ L EM G+ TI ++ VI LC GK
Sbjct: 365 MEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGK 424
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIK 219
A+ +L M G P+ + L+K
Sbjct: 425 PDDAVEVLSEMTNKGCTPNAYTCSSLMK 452
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A + + G++P+V TYTA+++G C GR N+A LL + I+R +T NV+T
Sbjct: 205 RVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYS 264
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL + + M P +T++++I LC +I +A + LM
Sbjct: 265 ALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSK 324
Query: 206 GKIPSRTSHDMLI 218
G P S++ LI
Sbjct: 325 GCFPDVVSYNTLI 337
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M + + G PDV +Y +++GFCK R + M+L + +RG+ N VT
Sbjct: 310 RIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYN 369
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+Q G P T+N ++ LC G + KAL++
Sbjct: 370 TLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIF 423
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + P+V TY+A++D F K G+ EA E+ E + + ++VT
Sbjct: 239 GRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTY 298
Query: 162 IQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L + G P +++N +I C ++ + L M +
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQ 358
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + +++ LI+ Q
Sbjct: 359 RGLVNNTVTYNTLIQGFFQ 377
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 101/236 (42%), Gaps = 43/236 (18%)
Query: 19 SPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDL 78
+R+ S+ DL+E L R D IK L + I++F + K S+ DFN L
Sbjct: 39 CSARASSSVSGGDLRER---LSKTRLRD-IK---LHDAINLFREMVKTRPFPSIVDFNRL 91
Query: 79 LMALVMLNEQDTAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGL 119
L A+V + + D + ++G +V A +L + G
Sbjct: 92 LSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGY 151
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----------- 168
+PD T ++++GFC+ R ++A+ L+++ +E G ++V ++ L
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALD 211
Query: 169 ---EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
E+G P +T+ ++ LC G+ + A LL M + P+ ++ L+
Sbjct: 212 FFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALL 267
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G+VE+A+ + ++ GLKPD+ TYT +M G C G +E L + + G+ +N
Sbjct: 449 GKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKN 504
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 18/138 (13%)
Query: 84 MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
++N T VG V++A E + + G+ PD++TY ++ G C
Sbjct: 361 LVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLC--------- 411
Query: 144 ELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ G+ + + + + +Q+ EM +T+ VIQ +C GK+ A L +
Sbjct: 412 -------DNGLLEKALVIFEDMQKSEMDL--DIVTYTTVIQGMCKTGKVEDAWGLFCSLS 462
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P ++ ++ L
Sbjct: 463 LKGLKPDIVTYTTMMSGL 480
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 34/188 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K LKE ++ + I K G +V FN L+ A D A S
Sbjct: 381 KKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVS 440
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+VG V+EA ++ ++ +GLK D+ TY ++D CK G + +A+ LL+E
Sbjct: 441 TYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDE- 499
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+TL++ + G +T+N +I+ C GK+ +A LL M E G IP
Sbjct: 500 ---------MTLME-----KKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIP 545
Query: 210 SRTSHDML 217
+RT++D+L
Sbjct: 546 NRTTYDIL 553
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 34/160 (21%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F +++ G +V +N L+ L SN G+++EA + + G
Sbjct: 321 VFEEMQRQGLQPNVVTYNSLINGLC------------SN----GKLDEALGLQDKMSGMG 364
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
LKP+V TY A+++GFCK EA E+L++ +RG+ NV IT
Sbjct: 365 LKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV------------------IT 406
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
FN +I A G++ A LL +M + G P+ ++++ LI
Sbjct: 407 FNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ ++A +++ ++K G P V TY I+DG+CK G+ +A LL E + + + N +T
Sbjct: 242 VGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEIT 301
Query: 161 ---LIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI R E G P +T+N++I LC GK+ +AL L M
Sbjct: 302 FNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMS 361
Query: 204 EHGKIPSRTSHDMLI 218
G P+ +++ LI
Sbjct: 362 GMGLKPNVVTYNALI 376
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 21/118 (17%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G VE Y+ ++ + + +V T+ +++G CKVG+ +A +++ + G +
Sbjct: 210 IGVVESVYKEMIRRR---IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFS----- 261
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P IT+N +I C GK+ KA LL M P+ + ++LI
Sbjct: 262 -------------PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILI 306
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 33/187 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +E + NS+ G + + +N L+ AL +D G++++A
Sbjct: 419 KQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALC----KD------------GKIQDAL 462
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLL 165
+M + + G KPD+YT+ +++ G CK + EA+ L + + GV N V TLI
Sbjct: 463 QMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAF 522
Query: 166 QRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
RLE+ G IT+N +I+ALC G K L L+ M+ PS
Sbjct: 523 LRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSI 582
Query: 212 TSHDMLI 218
S ++LI
Sbjct: 583 NSCNILI 589
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 18/144 (12%)
Query: 96 SNHLMVGRVEEAYEMLM-NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ +++ GR EEA ++L N+ G +PD +T+ ++DG CK G A+E L+E +++G
Sbjct: 344 NGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGF 403
Query: 155 TQNVVTLIQLLQRL-EMGHIPR----------------TITFNNVIQALCGVGKIHKALL 197
NV+T L+ + GH T+ +N +I ALC GKI AL
Sbjct: 404 EPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQ 463
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
+ M G P + + LI L
Sbjct: 464 MYGEMSSKGCKPDIYTFNSLIYGL 487
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V +A + L ++ GL PD+ TY ++++G CK+GR EA+ L N +G+
Sbjct: 596 GKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIH------ 649
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +T+N +I C G + A LLF +G IP+ + +LI
Sbjct: 650 ------------PDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILI 694
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G + A E L + G +P+V TYT ++DGFCK G EA +++N +G++ N V
Sbjct: 386 GYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGY 445
Query: 160 -TLIQLLQR-------LEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L + L+M G P TFN++I LC K+ +AL L M
Sbjct: 446 NCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLL 505
Query: 205 HGKIPSRTSHDMLI 218
G I + +++ LI
Sbjct: 506 EGVIANTVTYNTLI 519
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 32/175 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG--------------- 102
++F + G + +V F ++ A M+NE D+A + G
Sbjct: 186 NVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHAL 245
Query: 103 ----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
RV EA ++L + G +PDV T+ ++ G CK GR +EA +L + + R T +
Sbjct: 246 SENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADA 305
Query: 159 VTLIQLLQRL-EMGHI------------PRTITFNNVIQALCGVGKIHKALLLLF 200
+ L+ L MG + P T+ +N +I G+ +A LL+
Sbjct: 306 LIQGYLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLY 360
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR +EA + ++ G+ PD TY ++ +C G N+A +LL + + G N +T
Sbjct: 630 MGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEIT 689
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
L G P TF V++A C V ++ A LL M +HG +P+ + MLI L +
Sbjct: 192 LSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSE 247
>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 790
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A +++++ + G PDV TYTAI+DGFC+VG+ +EA ++L + + G N VT
Sbjct: 424 IDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTV 483
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LL L E P IT++ V+ L GK+ +A L M E G
Sbjct: 484 LLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKG 543
Query: 207 KIPSRTSHDMLIKKL 221
+P+ ++LI+ L
Sbjct: 544 FLPNPVDINLLIQSL 558
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + S H G ++A L + G D Y+A++D FCK ++A L+ +
Sbjct: 377 NTLIYALSKH---GHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVID 433
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+G P +T+ +I C VGKI +A +L MY+HG
Sbjct: 434 MYSKGCN------------------PDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHGCK 475
Query: 209 PSRTSHDMLIKKL 221
P+ ++ +L+ L
Sbjct: 476 PNTVTYTVLLNGL 488
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 34/176 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L+ + I ++K G +S N + LV N+ + A++F
Sbjct: 244 RAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRF-------------- 289
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------- 161
L +K G++PD+ +Y ++ G+C V R ++A+EL+ E +G + V+
Sbjct: 290 --LERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFL 347
Query: 162 -----IQLLQRL------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ ++RL IP +T+N +I AL G AL+ L E G
Sbjct: 348 CKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKG 403
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G ++ A ML ++ PD TYT + D K R +EA EL+ + + +G+ VT
Sbjct: 596 IGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVT 655
Query: 161 LIQLLQRL-EMGHI--------------PRTITFNNVIQALCGVGKIHKALLLLF-LMYE 204
++ R + G + P +N VI+ LC G +A LL ++
Sbjct: 656 YRAVIHRFCQWGRVDDMMKLLEKMIARQPFKTVYNQVIEKLCYFGNREEAEKLLGKVLRT 715
Query: 205 HGKIPSRTSH 214
K+ ++T H
Sbjct: 716 ASKLDAKTCH 725
Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 55/158 (34%), Gaps = 53/158 (33%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-------- 153
G+ EA EM+ + P+ TY+A+M G + G+ +EA +L E IE+G
Sbjct: 492 GKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDI 551
Query: 154 ---------------------------VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186
NVV F +VI
Sbjct: 552 NLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVV------------------NFTSVIYGF 593
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
C +G + AL +L MY K P ++ L L ++
Sbjct: 594 CQIGDLDAALSMLEDMYLSNKHPDAITYTTLFDALGKK 631
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 45/204 (22%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
R+L A R D + + + S++ G V + L+ L E D AV+
Sbjct: 123 RALCADRLAD--------QAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMG 174
Query: 97 -------------------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
+ GR E+ ++ + + G++PDV YT ++D CKVG
Sbjct: 175 EMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVG 234
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
++ +A +++ + RG+ NVV T+N +I +C G + +A+
Sbjct: 235 KAKKAHGVMDMMVRRGLEPNVV------------------TYNVLINCMCKEGSVKEAIG 276
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
+L M E G P +++ LIK L
Sbjct: 277 VLKKMSEKGVAPDVVTYNTLIKGL 300
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 16/120 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA +L + G+ PDV TY ++ G V +EAM LL E + RG +N+V
Sbjct: 269 GSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMV-RG--KNIVK- 324
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN+VIQ LC +G++ +A + +M E G + + ++++LI L
Sbjct: 325 ------------PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGL 372
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 22/157 (14%)
Query: 84 MLNEQDTAVKFFSNHLMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
M+ E V + +L++G +V +A E++ + + GL+PD +TY+ ++ GFCK+
Sbjct: 352 MMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMW 411
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHIPRT---------------ITFNN 181
+ + A +LL+ +RG+ + I LL + E G + R + ++
Sbjct: 412 QVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYST 471
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+I C G + A LL + + G P ++ ++I
Sbjct: 472 MIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVI 508
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 31/178 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +KE I + + + G V +N L+ L + E D A+
Sbjct: 267 KEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLL------------- 313
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLL 165
E ++ KN +KP+V T+ +++ G C +GR +A ++ E G N+VT LI L
Sbjct: 314 EEMVRGKNI-VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGL 372
Query: 166 QRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
R+ +G P + T++ +I+ C + ++ +A LL M + G P
Sbjct: 373 LRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEP 430
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A E+L ++ ++GL PD TY+ +++ F K G ME N GV
Sbjct: 480 GDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGD----MEAAN-----GV------- 523
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L Q G +P F+++IQ G+I+K L L+
Sbjct: 524 --LKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELI 559
>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia seriphioides]
Length = 414
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ S ++ +G ++E + + + G
Sbjct: 147 VFDAITKWGLRPSVVSYNTLM----------------SGYIRLGDLDEGFRLKSAMHASG 190
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + +EA EL +E + G+ VT L+
Sbjct: 191 VQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAM 250
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A +L+ M G P + ++ LI
Sbjct: 251 EIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLI 307
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ ++ + G KPD TYT ++DG CK G + A E I+ + + V
Sbjct: 279 GBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 338
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ +I C G + LL M
Sbjct: 339 TALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQR 398
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 399 DGHVPSVVTYNVLM 412
>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 418
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K G SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A+E I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYVPS 415
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++ E+ + +K G+ PDV Y++I+ G C GR A L NE ++ GV NVV
Sbjct: 252 GLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVV-- 309
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN +I ALC GK+ +A LL LM + G+ P +++ LI
Sbjct: 310 ----------------TFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLI 350
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 36/199 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMAL--------------VMLNEQDTAVKFFSNHL----- 99
+FN + +G + +V FN L+ AL +M+ ++ F N L
Sbjct: 295 LFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFC 354
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+ GR+++A ++ +++++ G++ D +Y +++G+CK GR EA +L E + + + V+
Sbjct: 355 LEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVI 414
Query: 160 TLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLM 202
T LL L G + P + T+N ++ LC + +A+ L +
Sbjct: 415 TYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYL 474
Query: 203 YEHGKIPSRTSHDMLIKKL 221
H PS + LI L
Sbjct: 475 ENHDFQPSIQIFNCLIDGL 493
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 84/215 (39%), Gaps = 46/215 (21%)
Query: 8 SPTPFSVLLVDSPSRSPSAAESLD-LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD 66
SP P S L D+ S +P + + LK N +S +R E +FN +
Sbjct: 38 SPGPIS-LTKDTVSNAPDRGQLENFLKSNCKSGHIKR----------SEAFSVFNHLIDM 86
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
+S FN LL A+ + + + ++G L PD T
Sbjct: 87 QPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIG----------------LAPDFITL 130
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186
+++ +C + + + + +L E + RG H P T+TF ++++ L
Sbjct: 131 NILINCYCNLNKVDFGLAVLGEMLRRG------------------HSPNTVTFTSLVKGL 172
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
C +I +A LL M G P+ ++ L+ L
Sbjct: 173 CLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGL 207
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 35/189 (18%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P S +D + K + L E +++F+ ++ S+ FN L+ L
Sbjct: 446 PESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKAR-------- 497
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
++E A E+ + ++GL+P+V TYT ++ G CK G+ A +L E+G
Sbjct: 498 --------KIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGC 549
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
N+V TFN +++ C ++ K + LL M E P ++
Sbjct: 550 APNLV------------------TFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTI 591
Query: 215 DMLIKKLDQ 223
+++ L +
Sbjct: 592 SIVVDLLSK 600
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 36/181 (19%)
Query: 75 FNDLLMALVMLNEQDTAVKFFS--------------NHLMVG-----RVEEAYEMLMNVK 115
+ L+M + D+A K F HL+ G R++EA ++ + +K
Sbjct: 256 YTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMK 315
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------- 165
+D P V TYT ++ C R +EA+ L+ E E+G+ N+ T L+
Sbjct: 316 DDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLE 375
Query: 166 -------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q LE G +P IT+N +I C G I AL ++ LM P+ +++ LI
Sbjct: 376 KARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELI 435
Query: 219 K 219
K
Sbjct: 436 K 436
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + AY +L + + GL PD +TYT+++D CK R EA +L + ++ V NVV
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMY 535
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +P ++TFN +I LC GK+ +A LL M +
Sbjct: 536 TALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVK 595
Query: 205 HGKIPSRTSHDMLIKKL 221
P+ ++ +LI +L
Sbjct: 596 IDLQPTVSTDTILIHRL 612
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ E +D+F +K D +V + L+ AL R EA ++
Sbjct: 304 IDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSE----------------RKSEALNLVK 347
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-RLEMG 171
++ G+KP+++TYT ++D C + +A ELL + +E+G+ NV+T L+ + G
Sbjct: 348 EMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407
Query: 172 HI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
I P T T+N +I+ C +HKA+ +L M E +P +++
Sbjct: 408 MIEDALDVVELMESRNLRPNTRTYNELIKGYCK-RNVHKAMGVLNKMLERKVLPDVVTYN 466
Query: 216 MLI 218
LI
Sbjct: 467 SLI 469
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T K + + VG VEEA + + + GL PD +TYT+++ G+C+ + A ++ E
Sbjct: 220 TYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEM 279
Query: 150 IERGVTQNVVTLIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKI 192
+G +N V L+ L + P T+ +I+ALCG +
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERK 339
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+AL L+ M E G P+ ++ +LI L Q
Sbjct: 340 SEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQ 371
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F + GR+++A +M+ +K +G+ PD++TY++++ G+ +GR+N A +L
Sbjct: 639 TYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRM 698
Query: 150 IERGVTQNVVTLIQLLQR-LEM------GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ G + T + L++ LEM G P +N+++ + LL M
Sbjct: 699 HDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMME-------FDIVVELLEKM 751
Query: 203 YEHGKIPSRTSHDMLI 218
EHG P+ S++ L+
Sbjct: 752 VEHGVTPNAKSYEKLM 767
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+E ++ M + D + P++YTY +++G+CKVG EA + ++ +E G+ + T
Sbjct: 197 GLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTY 256
Query: 162 IQLLQRLEMGHIPRT---------------------ITFNNVIQALCGVGKIHKALLLLF 200
L+ MG+ R + + ++I LC +I +A+ L
Sbjct: 257 TSLI----MGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFV 312
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M + P+ ++ +LIK L
Sbjct: 313 KMKDDDCYPTVRTYTVLIKAL 333
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + AY + + G KPD +TYT + +C+ GR +A +++ + E GV+
Sbjct: 616 GDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVS------ 669
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T++++I+ +G+ + A ++L M++ G PS+ + LIK L
Sbjct: 670 ------------PDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHL 717
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 21/146 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLK----PDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
N L+ G + M V N L+ PDV TY +++DG C+ G + A LL+ +R
Sbjct: 432 NELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR 491
Query: 153 GVTQNVVTLIQLL------QRLEMGH-----------IPRTITFNNVIQALCGVGKIHKA 195
G+ + T ++ +R+E IP + + +I C GK+++A
Sbjct: 492 GLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEA 551
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKL 221
L+L M +P+ + + LI L
Sbjct: 552 HLMLEKMLSKNCLPNSLTFNALIHGL 577
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 37/217 (17%)
Query: 23 SPSAA---ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDL 78
SP+ A E LD P + + ++ K + E +F I K G +V FN L
Sbjct: 207 SPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTL 266
Query: 79 LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
+ + + G +++ + + + + + PDV+TY+ +++G CK G+
Sbjct: 267 I----------------NGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQ 310
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNN 181
++A +L E +RG+ N VT L+ Q L G P IT+N
Sbjct: 311 LDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNT 370
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+I LC VG + +A L+ M + G P + ++ MLI
Sbjct: 371 LINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLI 407
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 20/123 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA L + G+KPD TYT ++ GFCK G +V T
Sbjct: 449 GQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKG-------------------DVKTG 489
Query: 162 IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+LL+ ++ GH+P +T+N ++ LC G++ A +LL M G +P ++++L+++
Sbjct: 490 FKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLER 549
Query: 221 LDQ 223
Q
Sbjct: 550 TLQ 552
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 23/180 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALV---MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
+ N + K+G + D N L + + ++ T + H + GR + E+ +
Sbjct: 301 LINGLCKEG---QLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQML 357
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ--------- 166
G+KPDV TY +++G CKVG EA +L+ E +RG+ + T L+
Sbjct: 358 RKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLE 417
Query: 167 -----RLEM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
R EM G + F +I C G++ +A L M E G P ++ M+I
Sbjct: 418 SALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRV------EEAYEMLMNVKNDGLKPDVYTYTA 128
F+D + ++ + + + F S + R+ A+ + + G PDV +
Sbjct: 171 FSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNV 230
Query: 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL---------------LQRLEMGH- 172
+M CK + NEA L E +RG+ VV+ L L+R M +
Sbjct: 231 LMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENR 290
Query: 173 -IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T++ +I LC G++ A L M + G +P+ + LI
Sbjct: 291 VFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLI 337
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR EEA ++L +K+ GL PDV+ Y ++ GFCK G+ E L E I +G+ NV T
Sbjct: 491 GRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTY 550
Query: 162 ------------IQLLQR-----LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+Q +R L+ G P + ++I C G KA M +
Sbjct: 551 GAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLD 610
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G +P +H +LI L +
Sbjct: 611 QGVLPDVQTHSVLIHGLSK 629
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T SN G ++ A+E+ ++ G+ P++ TY A+++G CK+G +A EL +
Sbjct: 654 TYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGI 713
Query: 150 IERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
E+G+ +N VT QL +++ G P + + +I C G
Sbjct: 714 PEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNT 773
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
KAL L M E G I S + + LI
Sbjct: 774 EKALSLFLGMVEEG-IASTPAFNALI 798
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ V +E+AYE+L+ +K + L + Y AI++G C G A EL E I G+ N
Sbjct: 417 YYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPN 476
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+V +++ L + G P +N VI C GK+ + L
Sbjct: 477 IVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLV 536
Query: 201 LMYEHGKIPSRTSHDMLI 218
M G P+ ++ I
Sbjct: 537 EMIAKGLKPNVYTYGAFI 554
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA E+ ++ N GL PD Y Y ++DGFC+ RS E +L+E G+ + V
Sbjct: 281 GDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAY 340
Query: 162 IQLL----QRLEMGHIPR-------------TITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ ++ ++G + T T+ +I LC +G + KA L M
Sbjct: 341 TALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTM 400
Query: 205 HGKIPSRTSHDMLIK 219
G P +++ LI+
Sbjct: 401 MGIKPDIQTYNCLIE 415
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 32/173 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDF-----NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111
IDI+ KK N +VS F N+ ++ L N S L+ G E + +
Sbjct: 170 IDIYR--KKGFLNEAVSVFLGAKTNEFIVGLACCNS-------LSKDLLKGNRVELFWKV 220
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171
+ PDVYTYT +++ +C+VG+ E +L + E+G
Sbjct: 221 YKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGC----------------- 263
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
IP +T++ VI LC G + +AL L M G +P + LI +Q
Sbjct: 264 -IPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQ 315
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA + + + GL PDV+TYT+++ CK G A EL ++ ++G+ N+V
Sbjct: 631 GKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIV-- 688
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+N +I LC +G+I KA L + E G + ++ +I
Sbjct: 689 ----------------TYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTII 729
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 38/190 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K LK ++ + + K G N ++ +N L+ L L E A + F
Sbjct: 664 KEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSV 723
Query: 96 ------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ + + EA+++ +K G+ PD + Y A++DG CK G + +A+ L
Sbjct: 724 TYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGM 783
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+E G I T FN +I +GK+ +A L+ M ++ P
Sbjct: 784 VEEG-------------------IASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITP 824
Query: 210 SRTSHDMLIK 219
+ ++ +LI+
Sbjct: 825 NHVTYTILIE 834
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
H VG ++EA ++ M ++ + P+V TYT+++ G+ ++GR +E L +E + RG+
Sbjct: 836 HCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGI 892
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + VG+VEE +L +++ G P++ TY+ ++ G C+ G +EA+EL
Sbjct: 234 TYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSM 293
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+G+ +P + +I C + + +L MY G P
Sbjct: 294 ANKGL------------------LPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKP 335
Query: 210 SRTSHDMLIKKLDQQ 224
++ LI +Q
Sbjct: 336 DHVAYTALINGFVKQ 350
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 84/226 (37%), Gaps = 68/226 (30%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K +E I I +K G + V +N +++ G++EE
Sbjct: 488 VKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCK----------------AGKMEEG 531
Query: 108 YEMLMNVKNDGLKPDVYTYTA-----------------------------------IMDG 132
L+ + GLKP+VYTY A ++DG
Sbjct: 532 KSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDG 591
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR--------------LEMGHIPR 175
+CK G + +A +++GV +V T LI L + L+ G +P
Sbjct: 592 YCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPD 651
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ ++I LC G + A L M + G P+ +++ LI L
Sbjct: 652 VFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGL 697
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++ EAY+++ ++ ++ + P+ TYT +++ C VG EA +L E +R V NV+T
Sbjct: 804 LGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLT 863
Query: 161 LIQLLQ 166
LL
Sbjct: 864 YTSLLH 869
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 79 LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
L AL +L + T F L GRV+EA ++ +K GL PDV+TY++++ GFCK G
Sbjct: 515 LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 574
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+A EL +E +G+ N+ +N ++ LC G I +A L
Sbjct: 575 VEKAFELHDEMCLKGIAPNI------------------FIYNALVDGLCKSGDIQRARKL 616
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
M E G P ++ +I
Sbjct: 617 FDGMPEKGLEPDSVTYSTMI 636
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
G++EEA L+ ++ GLKPD T+ A + G+ K G+ EA + +E ++ G+
Sbjct: 433 GKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLY 492
Query: 155 ---------TQNVVTLIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
N++ + + + L +G +P T + I L G++ +AL + + E
Sbjct: 493 TVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE 552
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P ++ LI +Q
Sbjct: 553 KGLVPDVFTYSSLISGFCKQ 572
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 37/178 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK-------------- 93
+K ++E + +F+ +K+ G V ++ L+ E + A +
Sbjct: 535 LKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 594
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F N L+ G ++ A ++ + GL+PD TY+ ++DG+CK EA L +E
Sbjct: 595 FIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHE 654
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+GV P + +N ++ C G + KA+ L M + G
Sbjct: 655 MPSKGVQ------------------PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 694
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA +L + G+ PD++ Y AI+ K G+ EA L E RG+
Sbjct: 398 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK------ 451
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +TF I GK+ +A M +HG +P+ + +LI
Sbjct: 452 ------------PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLI 496
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 98/236 (41%), Gaps = 46/236 (19%)
Query: 16 LVDSPSRSPSAAESLDL-KENP-RSLQAQRFV------DKIKASPLKERIDIFNSIKKDG 67
++D +S + AE+ L E P + +Q FV K +++ +++F + + G
Sbjct: 635 MIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 694
Query: 68 TNWSVSDFNDL-------------------LMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
++S FN L ++A ++ + T H G++EEA
Sbjct: 695 FATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEAN 753
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ ++ L D TYT++M G+ K+G+S+E L + + +GV
Sbjct: 754 LLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVK------------- 800
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
P +T+ VI A C + +A L + G + T HD+LI L ++
Sbjct: 801 -----PDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKR 851
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA ++ GLKPD +A++DGF + G +E + + + + G+ N++T
Sbjct: 224 RMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYN 283
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L +G P + TF +I+ C + +AL LL M +
Sbjct: 284 VLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKR 343
Query: 206 GKIPSRTSHDMLIKKL 221
+PS S+ +I L
Sbjct: 344 NLVPSAVSYGAMINGL 359
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---VVTLIQLLQR 167
L ++ GL P+ YTYT I G C+ R NEA E + G+ + LI R
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 256
Query: 168 --------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ G IT+N +I LC GK+ KA +L M G P+ +
Sbjct: 257 EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRT 316
Query: 214 HDMLIK 219
+LI+
Sbjct: 317 FCLLIE 322
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++E+A E+L + G KP+ T+ +++G+C+ A+ELL+E +R + + V+
Sbjct: 293 GKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 352
Query: 162 I----------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+LL+++ G P + ++ +I G+I +A LL M
Sbjct: 353 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSC 412
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G P ++ +I L +
Sbjct: 413 SGVAPDIFCYNAIISCLSK 431
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K ++E + + I +G +++ +N LL L + GR+EEA
Sbjct: 279 KNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKM----------------GRLEEAI 322
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++L + ++G PDV TYT+++DG K RS EA +L E RG+ + V L++ L
Sbjct: 323 DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIREL 382
Query: 169 -----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
G +P +T + +I L G+I A+ + M G P+
Sbjct: 383 LQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNE 442
Query: 212 TSHDMLIKKL 221
+ LI L
Sbjct: 443 VVYSALIHGL 452
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
++E + + I +G +++ +N LL L + GR+EEA ++L
Sbjct: 2 IEEAVALMEKITANGCTPTIATYNALLNGLCKM----------------GRLEEAIDLLR 45
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---- 168
+ ++G PDV TYT+++DG K RS EA +L E RG+ + V L++ L
Sbjct: 46 KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTG 105
Query: 169 -------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
G +P +T + +I L G+I A+ + M G P+ +
Sbjct: 106 KIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYS 165
Query: 216 MLIKKL 221
LI L
Sbjct: 166 ALIHGL 171
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++EEA ++ + +G P + TY A+++G CK+GR EA++LL + ++ G T +VVT
Sbjct: 1 KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L EM G T+ + +I+ L GKI +A + M H
Sbjct: 61 SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G +P + +I L +
Sbjct: 121 GCVPDVVTLSTMIDGLSK 138
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++EEA ++ + +G P + TY A+++G CK+GR EA++LL + ++ G T +VVT
Sbjct: 282 KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 341
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L EM G T+ + +I+ L GKI +A + M H
Sbjct: 342 SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 401
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G +P + +I L +
Sbjct: 402 GCVPDVVTLSTMIDGLSK 419
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 37/213 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
KA + + IF S++ G + ++ L+ L + D A++ +
Sbjct: 138 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 197
Query: 97 --NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM-ELLNE 148
N L+ G VE A + G KPDVYTY ++ GFCK G ++ A L E
Sbjct: 198 TYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQE 257
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGK 191
G T ++ T + L++++ G P T+N ++ LC +G+
Sbjct: 258 TTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGR 317
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ +A+ LL + ++G P ++ LI L ++
Sbjct: 318 LEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKE 350
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 74/207 (35%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------- 98
K L+E ID+ I +G V + L+ L A K F
Sbjct: 32 CKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDT 91
Query: 99 ----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
L G++ +A + + + G PDV T + ++DG K GR A+ +
Sbjct: 92 VCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKS 151
Query: 149 AIERGVTQNVVTLIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGK 191
RG+ N V L+ L P TIT+N +I LC G
Sbjct: 152 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGD 211
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A M E G P ++++LI
Sbjct: 212 VEAARAFFDEMLEAGCKPDVYTYNILI 238
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 37/177 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
KA + + IF S++ G + ++ L+ L + D A++ +
Sbjct: 419 KAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 478
Query: 98 --HLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++++ G VE A + G KPDVYTY ++ GFCK G ++ A + ++
Sbjct: 479 TYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 538
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+ NVV T+ +I LC ++ KA L M E G
Sbjct: 539 SSSRCSANVV------------------TYGALISGLCKRRQLTKASLYFQHMKERG 577
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ A + +++ GL P+ Y+A++ G CK + + A+E+L + + T
Sbjct: 421 GRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCT------ 474
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P TIT+N +I LC G + A M E G P ++++LI
Sbjct: 475 ------------PDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 519
>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 665
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A+E L N+ + G PD +YT ++ G C+ GR +A ELLNE + +
Sbjct: 326 GRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCP------ 379
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN I LC G I +A+LL+ M E+G +++ L+
Sbjct: 380 ------------PNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGF 427
Query: 222 DQQ 224
Q
Sbjct: 428 CVQ 430
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A +L ++ +P V TYT +++ CK +AM++L+E +G T N+VT
Sbjct: 151 GRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTY 210
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
Q+L RL G P T+++ V++ LC + +L M E
Sbjct: 211 NVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVE 270
Query: 205 HGKIPSRTSHDMLIK 219
+ +P+ + DML++
Sbjct: 271 NNCVPNEVTFDMLVR 285
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 82/166 (49%), Gaps = 23/166 (13%)
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
ND + +V N V FF G VEEA E++ + G P++ T+ ++DG +
Sbjct: 478 NDCPLNVVTFN---VLVSFFCQK---GFVEEAIELVQQMMEHGCTPNLITFNTLLDGITE 531
Query: 136 VGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR--------------LEMGHIPRTIT 178
S EA+ELL+ + +G++ + +T ++ +L R +MG P+ +
Sbjct: 532 DCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVM 591
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+N ++ ALC + +A+ M + +P+ +++ +LI+ L ++
Sbjct: 592 YNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLARE 637
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ + GR++ A ++ ++ + PD YTYT ++ G C GR +A+ LL++ + R
Sbjct: 113 AGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQ 169
Query: 156 QNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLL 198
+VVT LL+ + EM G P +T+N +I +C ++ A +
Sbjct: 170 PSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQI 229
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L + +G P S+ ++K L
Sbjct: 230 LNRLSSYGFQPDTVSYTTVLKGL 252
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A ++L ++ G P++ TY I++G C+ R ++A ++LN G + V+ +L
Sbjct: 190 QAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVL 249
Query: 166 QRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L E +P +TF+ +++ C G + +A+ +L M EHG
Sbjct: 250 KGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCT 309
Query: 209 PSRTSHDMLIKKLDQQ 224
+ T +++I + +Q
Sbjct: 310 ANTTLCNIVINSICKQ 325
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A ++ + G + TY A+++GFC GR + A+EL N T TL
Sbjct: 396 GLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITYTTL 455
Query: 162 I-------------QLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ +LL + P +TFN ++ C G + +A+ L+ M EHG
Sbjct: 456 LTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGC 515
Query: 208 IPSRTSHDMLIKKLDQ 223
P+ + + L+ + +
Sbjct: 516 TPNLITFNTLLDGITE 531
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 65/150 (43%), Gaps = 18/150 (12%)
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA- 149
K N GR +A +L + G DV+ Y ++ G+C+ GR + A L+
Sbjct: 73 CTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASMP 132
Query: 150 ---------------IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
+RG + ++L+ + R E P +T+ +++A+C +
Sbjct: 133 VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQ--PSVVTYTVLLEAVCKSSGFGQ 190
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ +L M G P+ +++++I + ++
Sbjct: 191 AMKVLDEMRAKGCTPNIVTYNVIINGMCRE 220
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 88/191 (46%), Gaps = 33/191 (17%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-----------HLMVG-----RVEEAYEM 110
G + + +N L+ + D+A++ F++ L+ G R++ A E+
Sbjct: 412 GCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITYTTLLTGLCHAERLDAAAEL 471
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL----- 165
L + + +V T+ ++ FC+ G EA+EL+ + +E G T N++T LL
Sbjct: 472 LAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITE 531
Query: 166 -----QRLEMGH--IPR-----TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ LE+ H + + TIT+++++ L +I +A+ + + + G P
Sbjct: 532 DCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVM 591
Query: 214 HDMLIKKLDQQ 224
++ ++ L ++
Sbjct: 592 YNKILSALCKR 602
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
EA ++ + G PDVY T ++ C+ GR+++A +L A G +V L+
Sbjct: 53 EAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLV 112
Query: 166 ------------QRL--EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+RL M P T+ +I+ LC G++ AL LL M PS
Sbjct: 113 AGYCRYGRLDAARRLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSV 172
Query: 212 TSHDMLIKKL 221
++ +L++ +
Sbjct: 173 VTYTVLLEAV 182
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 52/174 (29%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDG------------------------------ 132
RV++A ++L + + G +PD +YT ++ G
Sbjct: 222 RVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFD 281
Query: 133 -----FCKVGRSNEAMELLNEAIERGVTQN------VVTLIQLLQRLE-----------M 170
FC+ G A+E+L+ E G T N V+ I R++
Sbjct: 282 MLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSY 341
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G P TI++ V++ LC G+ A LL M P+ + + I L Q+
Sbjct: 342 GCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQK 395
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
++E + +F++++ G +N +L AL E D A+ FF+ H++
Sbjct: 570 IEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFA-HMV------------ 616
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
++ P+ TY +++G + G EA +L+E RGV
Sbjct: 617 ---SNSCMPNESTYVILIEGLAREGLLKEARYVLSELCSRGV 655
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 37/217 (17%)
Query: 23 SPSAA---ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDL 78
SP+ A E LD P + + ++ K + E +F I K G +V FN L
Sbjct: 207 SPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTL 266
Query: 79 LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
+ + + G +++ + + + + + PDV+TY+ +++G CK G+
Sbjct: 267 I----------------NGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQ 310
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNN 181
++A +L E +RG+ N VT L+ Q L G P IT+N
Sbjct: 311 LDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNT 370
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+I LC VG + +A L+ M + G P + ++ MLI
Sbjct: 371 LINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLI 407
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 23/180 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALV---MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
+ N + K+G + D N L + + ++ T + H + GR + E+ +
Sbjct: 301 LINGLCKEG---QLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQML 357
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ--------- 166
G+KPDV TY +++G CKVG EA +L+ E +RG+ + T L+
Sbjct: 358 RKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLE 417
Query: 167 -----RLEM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
R EM G + F +I C G++ +A L M E G P ++ M+I
Sbjct: 418 SALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 20/119 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA L + G+KPD TYT ++ GFCK G +V T
Sbjct: 449 GQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKG-------------------DVKTG 489
Query: 162 IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+LL+ ++ GH+P +T+N ++ LC G++ A +LL M G +P ++++L++
Sbjct: 490 FKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 23/167 (13%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE------AYEMLMNVKNDGLKPDVYTYTA 128
F+D + ++ + + + F S + R+ + A+ + + G PDV +
Sbjct: 171 FSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNV 230
Query: 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL---------------LQRLEMGH- 172
+M CK + NEA L E +RG+ VV+ L L+R M +
Sbjct: 231 LMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENR 290
Query: 173 -IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T++ +I LC G++ A L M + G +P+ + LI
Sbjct: 291 VFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLI 337
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L IDI + + G + +N LL + D A+++ N
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419
Query: 99 LMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++ G+VE+A E+L + + G P + TY ++DG K G++ +A++LL+E +
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ + +T L+ L MG P +TFN+++ LC + +A+
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAI 539
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M G P+ TS+ +LI+ L
Sbjct: 540 DFLVFMINRGCKPNETSYTILIEGL 564
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 23/143 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V A ++L +++ G PDV TY +++G CK GR +EA++ LN+ G NV+T
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L+ L G P +TFN +I LC G + +A+ +L M +HG
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 207 KIPSRTSHDMLI------KKLDQ 223
P+ S++ L+ KK+D+
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDR 397
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 22/144 (15%)
Query: 96 SNHL--MV--GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+NHL MV G +EE ++ L N+ G PD+ T ++ GFC++G++ +A ++L
Sbjct: 106 NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165
Query: 152 RGVTQNVVTL----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
G +V+T + +L R+ + P +T+N ++++LC GK+ +A
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS--PDVVTYNTILRSLCDSGKLKQA 223
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIK 219
+ +L M + P ++ +LI+
Sbjct: 224 MEVLDRMLQRDCYPDVITYTILIE 247
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A E+L + PDV TYT +++ C+ AM+LL+E +RG T +VVT
Sbjct: 218 GKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTY 277
Query: 162 IQLLQ------RLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL+ G P IT N +++++C G+ A LL M
Sbjct: 278 NVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR 337
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G PS + ++LI L ++
Sbjct: 338 KGFSPSVVTFNILINFLCRK 357
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+ F ++GR A ++L + G +P+ +Y ++ GFCK + + A+E L +
Sbjct: 351 INFLCRKGLLGR---AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS 407
Query: 152 RGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHK 194
RG ++VT +++L +L G P IT+N VI L GK K
Sbjct: 408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK 467
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ LL M P ++ L+ L ++
Sbjct: 468 AIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ + E I F+ ++ G + FN +++ L + D A+ F
Sbjct: 496 REGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDF-------------- 541
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
L+ + N G KP+ +YT +++G G + EA+ELLNE +G+ +
Sbjct: 542 --LVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMK 587
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 23/157 (14%)
Query: 82 LVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141
+VMLN T ++ + R E YEM+ + G PDV+TY+ +M G CK+GR
Sbjct: 313 VVMLN---TVIRGCLTEGKLARATELYEMM---GSKGCPPDVHTYSILMHGLCKLGRFGS 366
Query: 142 AMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQ 184
A+ +L+E E+G N+VT LL Q L G + +N +I
Sbjct: 367 AVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIY 426
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
ALC GK+ +A L+ M G P +++ +I L
Sbjct: 427 ALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHL 463
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G++++A ++ +K+ G KPD+ TY ++ C EA + IE GV N +
Sbjct: 432 GKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITY 491
Query: 160 -TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI L R L G I++N +I+ALC G + +++ LL M
Sbjct: 492 NTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVT 551
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ S++MLI +L
Sbjct: 552 KGIKPNNFSYNMLINEL 568
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 18/124 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+V +A E+ + N GL PD+ TY +++G CKVG ++ A+ LL E+ +NV
Sbjct: 571 AGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLL----EKLPNENV-- 624
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
H P +T+N +I C V + A +LL G +P+ + M+++
Sbjct: 625 -----------H-PDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQN 672
Query: 221 LDQQ 224
+Q
Sbjct: 673 FVRQ 676
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLL-------- 165
D + P +T+ C++GR+ +A+ LL G + V T+I L
Sbjct: 171 DRVPPTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAE 230
Query: 166 ------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ L MG TFN+++ LCG+G++ +A L+ M G +PS ++ L++
Sbjct: 231 AAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQ 290
Query: 220 KL 221
L
Sbjct: 291 GL 292
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 29/165 (17%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G V+ FNDL++ L L GRV EA ++ + G P V TY
Sbjct: 242 GCAADVNTFNDLVLGLCGL----------------GRVREAARLVDRMMTQGCMPSVVTY 285
Query: 127 TAIMDGFCKVGRSNEAMELL------NEAIERGVTQNVVTLIQLLQRLEM-------GHI 173
++ G C+ +++EA +L N + V + +T +L + E+ G
Sbjct: 286 GFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCP 345
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T++ ++ LC +G+ A+ +L M E G P+ ++ L+
Sbjct: 346 PDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLL 390
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA +L + G DV T+ ++ G C +GR EA L++ + +G +VVT
Sbjct: 226 GGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTY 285
Query: 162 IQLLQRL-----------EMGHIPR--TITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
LLQ L +G +P + N VI+ GK+ +A L +M G
Sbjct: 286 GFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCP 345
Query: 209 PSRTSHDMLIKKL 221
P ++ +L+ L
Sbjct: 346 PDVHTYSILMHGL 358
>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
citrodora]
Length = 380
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 40/196 (20%)
Query: 42 QRFVDK--IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL 99
QRF + I+ + L + N+I K G SV FN L+ + ++
Sbjct: 142 QRFCKEGDIRVAQL-----VLNAITKWGLRPSVVSFNTLI----------------NGYI 180
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+G ++E + + + G++PDVYTY+ +++G CK + ++A EL +E +++G+ N V
Sbjct: 181 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGV 240
Query: 160 TLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L+ Q L P IT+N +I LC G++ +A L+ M
Sbjct: 241 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEM 300
Query: 203 YEHGKIPSRTSHDMLI 218
G P + ++ LI
Sbjct: 301 SMEGLKPDKITYTTLI 316
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + +GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 288 GELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVY 347
Query: 162 IQLLQRL 168
L+ L
Sbjct: 348 TALISGL 354
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
G +E A+E + + ++ D YTA++ G C+ GRS +A ++L E + G+ N
Sbjct: 323 GDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNT 379
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
R+ +AY ++ ++ G+ PD+ TY ++DG CK G+ EA ELL +E+ +VVT
Sbjct: 317 RLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYS 376
Query: 161 -LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L + LE G P +TFN +I C GK+ + +L LM E
Sbjct: 377 ILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEV 436
Query: 206 GKIPSRTSHDMLI 218
P ++ LI
Sbjct: 437 SCTPDVVTYSTLI 449
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 36/214 (16%)
Query: 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF--------- 94
V + + L E + +K+ G +N LL L N+ + K
Sbjct: 169 IVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGR 228
Query: 95 ----FSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
FS + +V G+ EEA ++L + PDV TY ++MDGFCKV + +EA
Sbjct: 229 EPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAER 288
Query: 145 LLNEAIERGVTQNVVTLIQLL------QRL-----------EMGHIPRTITFNNVIQALC 187
LL + + R V+T L+ RL + G P +T+N ++ LC
Sbjct: 289 LLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLC 348
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
GK+ +A LL +M E P ++ +L+ L
Sbjct: 349 KAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGL 382
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V R +EA +ML + G +P++YTY+ +++G CK R +A+ +L+ +E+G +V T
Sbjct: 519 VERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVAT 578
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + G P + +N +I C G + KA+ ++ LM
Sbjct: 579 YTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLML 638
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
E G P ++ L++ L +
Sbjct: 639 EKGCNPDAATYFSLMRSLTTE 659
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 83/157 (52%), Gaps = 17/157 (10%)
Query: 82 LVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
L ++ E+D A + ++V G+V++A +L + G +P++ T+ ++DGFCK
Sbjct: 360 LEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCK 419
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLL------QRLE-----MGHIPRTITFNNVIQ 184
G+ +E ++L E T +VVT L+ R++ +G P +++++++
Sbjct: 420 AGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLE 479
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LC GK+ +A ++ LM + G P+ + + ++I L
Sbjct: 480 GLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGL 516
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G+VEEA E++ + G P Y I+ G C V R +EA+++L ERG N+ T
Sbjct: 485 GKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTY 544
Query: 161 --LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L + LE G +P T+ ++I C + K+ A M +
Sbjct: 545 SILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRD 604
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G P + ++++LI Q
Sbjct: 605 SGCEPDKLAYNILISGFCQ 623
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EAY++L + PD Y ++ G CK+G+ + A +L +ER +V+T
Sbjct: 107 RIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYT 166
Query: 163 ----------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+L++++ E G P T+ +N ++ LC ++ + LL M E
Sbjct: 167 SLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEA 226
Query: 206 GKIPSRTSHDMLIKKL 221
G+ P S++ ++ L
Sbjct: 227 GREPDTFSYNTVVACL 242
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+E +++L +K PDV TY+ ++DG+CK R +A +L + ++ +++
Sbjct: 421 GKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEG 480
Query: 162 IQLLQRLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ ++E G P + + +I LC V + +AL +L +M E G P+
Sbjct: 481 LCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPN 540
Query: 211 RTSHDMLIKKL 221
++ +LI L
Sbjct: 541 LYTYSILINGL 551
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K +++ I++ + + + G V+ + L+ +N+ D A
Sbjct: 552 CKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAA---------------- 595
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y+ +++ G +PD Y ++ GFC+ G +A+E++ +E+G + T L++
Sbjct: 596 YQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRS 655
Query: 168 L 168
L
Sbjct: 656 L 656
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 15/131 (11%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
E Y +D KP TY A++ GF + G S +E+ NE + R + +V+T +L
Sbjct: 7 EGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTIL 66
Query: 166 Q---------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ R +M P T+ +I LC +I +A LL M + P
Sbjct: 67 KAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPD 126
Query: 211 RTSHDMLIKKL 221
++ LI L
Sbjct: 127 AAVYNCLIAGL 137
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 47/230 (20%)
Query: 39 LQAQRFVDK-----------IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87
++A+RFV IKA E ++F S+K+ G +N ++ +
Sbjct: 543 IKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK 602
Query: 88 QDTAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTA 128
+ A + G R++EAY + K+ ++ +V Y++
Sbjct: 603 VNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSS 662
Query: 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMG 171
++DGF KVGR +EA +L E +++G+T N+ T LL L E+
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ +I LC V K +KA + M + G PS S+ +I L
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
+KA+ L+E D+ ++K + S + L+ A +N D + F
Sbjct: 144 VKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTV 203
Query: 98 HLMV---------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
HL GRV+ A +L +K+ L D+ Y +D F KVG+ + A + +E
Sbjct: 204 HLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMG-HIPRTITFNNVIQALCGVGK 191
G+ + VT +++ + LE +P T +N +I GK
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGK 323
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A LL G IPS +++ ++ L
Sbjct: 324 FDEAYSLLERQRAKGSIPSVIAYNCILTCL 353
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G E+ M +K PD +Y+ ++ G K G +NE EL E+G +
Sbjct: 530 AGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLD--- 586
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
T +N VI C GK++KA LL M G P+ ++ +I
Sbjct: 587 ---------------TRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631
Query: 221 L 221
L
Sbjct: 632 L 632
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 35/174 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA+ L E +++F ++K+ +N ++M + G+ +EA
Sbjct: 284 CKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMG----------------YGSAGKFDEA 327
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y +L + G P V Y I+ K+G+ +EA+++ E
Sbjct: 328 YSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEE------------------- 368
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ P T+N +I LC GK+ A L M + G P+ + ++++ +L
Sbjct: 369 MKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRL 422
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---------FSN-- 97
K + E + +F +KKD ++S +N L+ L + DTA + F N
Sbjct: 355 KMGKVDEALKVFEEMKKDAAP-NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVR 413
Query: 98 --HLMVGRV------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++MV R+ +EA M + PD T+ +++DG KVGR ++A ++ +
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM 473
Query: 150 IERGVTQNVVTLIQLLQ------RLEMGH 172
++ N + L++ R E GH
Sbjct: 474 LDSDCRTNSIVYTSLIKNFFNHGRKEDGH 502
>gi|222637475|gb|EEE67607.1| hypothetical protein OsJ_25160 [Oryza sativa Japonica Group]
Length = 225
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 45/204 (22%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
R+L A R D + + + S++ G V + L+ L E D AV+
Sbjct: 2 RALCADRLAD--------QAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMG 53
Query: 97 -------------------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
+ GR E+ ++ + + G++PDV YT ++D CKVG
Sbjct: 54 EMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVG 113
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
++ +A +++ + RG+ NVV T+N +I +C G + +A+
Sbjct: 114 KAKKAHGVMDMMVRRGLEPNVV------------------TYNVLINCMCKEGSVKEAIG 155
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
+L M E G P +++ LIK L
Sbjct: 156 VLKKMSEKGVAPDVVTYNTLIKGL 179
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V+EA +L + G+ PDV TY ++ G V +EAM LL E + + Q+
Sbjct: 148 GSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGYIIQS 203
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 17/139 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M R++EA +M + + G PDV TY+ +++G+CK + M+L E +RGV +N V
Sbjct: 303 MYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTV 362
Query: 160 TLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L+Q + G P IT+N ++ LC GKI KAL++L M
Sbjct: 363 TYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADM 422
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ G +++++I+ +
Sbjct: 423 QKSGMDADIVTYNIIIRGM 441
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 33/188 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K+ + +D+ N ++ DG +N L+ L N GR ++A
Sbjct: 198 KSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLC--NS--------------GRWDDAT 241
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
M+ + + PDV+T+ A++D K GR +EA EL E I R + ++VT L+ L
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGL 301
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
M G P +T++ +I C K+ + L M + G + +
Sbjct: 302 CMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNT 361
Query: 212 TSHDMLIK 219
++ +LI+
Sbjct: 362 VTYTVLIQ 369
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
I+ L + +D+F + + S++DF+ LL A+ + + D + + M+G
Sbjct: 57 IRYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNL 116
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++ A L + G +PD+ T+ ++++GFC+ R +A+ + +
Sbjct: 117 CTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDR 176
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGK 191
+E G NVV + LL R+E+ I P +T+N++I LC G+
Sbjct: 177 MVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGR 236
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
A ++ M + P + + LI
Sbjct: 237 WDDATRMVSCMTKREIYPDVFTFNALI 263
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 17/110 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE ++ + G+ + TYT ++ G+C+ G+ N A E+ + GV N++T
Sbjct: 341 KVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYN 400
Query: 163 QLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGKIHKA 195
LL L + G I + +T+N +I+ +C G++ A
Sbjct: 401 VLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADA 450
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V +A+++ ++ GL PD++TYTA+M G K G EA L + E G+ N
Sbjct: 445 GEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++E+A +L +++ G+ D+ TY I+ G CK G +A +L +G+T ++ T
Sbjct: 410 GKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTY 469
Query: 162 IQLL 165
++
Sbjct: 470 TAMM 473
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 45/204 (22%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
R+L A R D + + + S++ G V + L+ L E D AV+
Sbjct: 123 RALCADRLAD--------QAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMG 174
Query: 97 -------------------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
+ GR E+ ++ + + G++PDV YT ++D CKVG
Sbjct: 175 EMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVG 234
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
++ +A +++ + RG+ NVV T+N +I +C G + +A+
Sbjct: 235 KAKKAHGVMDMMVRRGLEPNVV------------------TYNVLINCMCKEGSVKEAIG 276
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
+L M E G P +++ LIK L
Sbjct: 277 VLKKMSEKGVAPDVVTYNTLIKGL 300
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 16/120 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA +L + G+ PDV TY ++ G V +EAM LL E + RG +N+V
Sbjct: 269 GSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMV-RG--KNIVK- 324
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN+VIQ LC +G++ +A + +M E G + + ++++LI L
Sbjct: 325 ------------PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGL 372
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 22/157 (14%)
Query: 84 MLNEQDTAVKFFSNHLMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
M+ E V + +L++G +V +A E++ + + GL+PD +TY+ ++ GFCK+
Sbjct: 352 MMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMW 411
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHIPRT---------------ITFNN 181
+ + A +LL+ +RG+ + I LL + E G + R + ++
Sbjct: 412 QVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYST 471
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+I C G + A LL + + G P ++ ++I
Sbjct: 472 MIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVI 508
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 31/178 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +KE I + + + G V +N L+ L + E D A+
Sbjct: 267 KEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLL------------- 313
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLL 165
E ++ KN +KP+V T+ +++ G C +GR +A ++ E G N+VT LI L
Sbjct: 314 EEMVRGKNI-VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGL 372
Query: 166 QRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
R+ +G P + T++ +I+ C + ++ +A LL M + G P
Sbjct: 373 LRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEP 430
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A E+L ++ ++GL PD TY+ +++ F K G ME N GV
Sbjct: 480 GDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGD----MEAAN-----GV------- 523
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L Q G +P F+++IQ G+I+K L L+
Sbjct: 524 --LKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELI 559
>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 719
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 36/210 (17%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------- 96
A + E FN + KDG +V +N ++ + D A F
Sbjct: 440 AGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVT 499
Query: 97 ------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
+ G + ++ ++L+ + G KPD++T+++I+DG C+ + +A+ +E +
Sbjct: 500 FNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMV 559
Query: 151 ERGVTQNVVTLIQLLQRLE-MGHIPRTI----------------TFNNVIQALCGVGKIH 193
G++ N VT L+ L +G +PR++ +FN +IQ+ C +GK+
Sbjct: 560 MWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVE 619
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A L M G IP ++ IK Q
Sbjct: 620 DAKKLFSSMLSLGLIPDNYTYVAFIKVFCQ 649
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
IK L E +I + + G + S + L+ AL M G+V E
Sbjct: 403 IKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYM----------------AGKVTEG 446
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ DGL +V +Y ++D FCK ++A E +G+ N+VT L+
Sbjct: 447 NHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDG 506
Query: 168 -----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
LE G P TF+++I LC +I AL M G P+
Sbjct: 507 YCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPN 566
Query: 211 RTSHDMLIKKL 221
++++LI L
Sbjct: 567 AVTYNILIHSL 577
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
++G V + ++L ++ DG+ PDV+++ A++ FC++G+ +A +L +
Sbjct: 579 IIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSM---------- 628
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
L +G IP T+ I+ C G+ ++A L M +G +P + ++++
Sbjct: 629 --------LSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILD 680
Query: 220 KLDQQ 224
L +Q
Sbjct: 681 ALVKQ 685
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-VKF------------FSNHLMV--- 101
+IF I G + S +N ++ ALV N D A +KF F+ ++++
Sbjct: 203 EIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGV 262
Query: 102 ---GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
G V+EA ++ ++ G P+V+TYT ++DGF + +EA +L R V+ +
Sbjct: 263 CRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPSE 322
Query: 159 VTL 161
T+
Sbjct: 323 ATI 325
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-------------------R 103
++ DG N V FN L+ + + + + A K FS+ L +G R
Sbjct: 593 MQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGR 652
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
EA E+ ++++ +G PD +T I+D K + A ++ E G+ N +
Sbjct: 653 FNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVNFAAI 710
>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 670
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 40/216 (18%)
Query: 49 KASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
KA E ++ F+ + D +V FN +L ++ + A KF+
Sbjct: 136 KAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQ 195
Query: 96 ----SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
+ +L++ G+++ A + + PDV+TY+ +M+G CK R +EA+ L
Sbjct: 196 PNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFL 255
Query: 146 LNEAIERGVTQNVVTLIQLLQRLE-----------------MGHIPRTITFNNVIQALCG 188
L+E G N VT L+ L G +P +T+N +I LC
Sbjct: 256 LDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCL 315
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
GK+ KAL LL M +P++ ++ +I L +Q
Sbjct: 316 KGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQ 351
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA + ++ +GLKPDV Y++++ G C VG ++ ++L E
Sbjct: 492 GRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYE------------- 538
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+Q E P +T+N + ALC + +A+ LL M + G P + ++ ++ L
Sbjct: 539 ---MQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETL 595
Query: 222 DQQ 224
++
Sbjct: 596 RER 598
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ E A + + G KP+V Y A +DG C+ + +EA ++L E + +G N T
Sbjct: 387 GKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTY 446
Query: 162 IQLLQRL-------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
L++ +M H + + ++ LC G++ +AL + M
Sbjct: 447 SSLMKGFFKKGDSQKAILVWKEMMSQDMRH--NVVCCSVLLNGLCESGRLREALTVWTHM 504
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P ++ +IK L
Sbjct: 505 LGEGLKPDVVAYSSMIKGL 523
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
R E+ +LM+++ G K + Y Y++++ G K G+S A+ L E E+G NVV
Sbjct: 353 RAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYG 412
Query: 160 TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
I L R L G +P T++++++ G KA+L+
Sbjct: 413 AFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILV 465
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 36/183 (19%)
Query: 75 FNDLLMALVMLNEQDTAVKFFS--------------NHLMVG-----RVEEAYEMLMNVK 115
+N ++ AL L + D AV F + LM G RV+EA +L ++
Sbjct: 201 YNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQ 260
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH--- 172
+G P+ T+ ++D K G + A +L++ +G N VT L+ L +
Sbjct: 261 AEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLD 320
Query: 173 --------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P +T+ +I L + + +L M E G+ + + LI
Sbjct: 321 KALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLI 380
Query: 219 KKL 221
L
Sbjct: 381 SGL 383
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A +L + + P+ TY I++G K R+ + + +L ERG N
Sbjct: 317 GKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIY 376
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G P + + I LC K +A +L M
Sbjct: 377 SSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLS 436
Query: 205 HGKIPSRTSHDMLIK 219
G +P+ ++ L+K
Sbjct: 437 KGFLPNAFTYSSLMK 451
>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 39/249 (15%)
Query: 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVS 73
+++ PS PS + L L + SL RF K + + + I FN + + S
Sbjct: 3 MIMRRPSSRPSGTQMLSLLAHFLSLSHNRFHSKSLHFNTIDGAISSFNRMLRMQPPPSTV 62
Query: 74 DFNDLLMALVMLNEQDTAVKF-------------FSNHLMV--------GRVEEAYEMLM 112
DFN LL ++ + T + ++ H+++ G++ EA +
Sbjct: 63 DFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRGKIGEALHLFD 122
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---- 168
+ +G +PDV TY +++G CKVG ++ A+ LL +++ NV ++ L
Sbjct: 123 KMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDR 182
Query: 169 ----------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
EM G P T+N++I ALC + + LL M + +P S +
Sbjct: 183 QVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFN 242
Query: 216 MLIKKLDQQ 224
++ L ++
Sbjct: 243 TVVDALCKE 251
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 19/121 (15%)
Query: 102 GRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+V EA++++ ++ G P+V +Y +++G+CK+ R ++AM L E
Sbjct: 252 GKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGE------------ 299
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+ R E+ IP T+T++ +I LC V ++ A+ L M +IP+ ++ +L+
Sbjct: 300 ----MCRQEL--IPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDY 353
Query: 221 L 221
L
Sbjct: 354 L 354
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G +E A ++ N+ + GL+PDV+TY+ +++G C+ G +EA +L E E G T N
Sbjct: 393 GELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLN 448
>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
Length = 316
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ GR++EA ++ G PD+ TYT ++DG CK+GR ++AM + I+ G++ N
Sbjct: 90 YCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPN 149
Query: 158 VVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
++T L+ M G P TFN++I L GK+ +A L
Sbjct: 150 IITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFD 209
Query: 201 LMYEHGKIPSRTSHDMLI 218
LM G P+ S++ +I
Sbjct: 210 LMPRAGAKPNVVSYNTMI 227
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 17/122 (13%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ---------- 166
DG P+V TY+ +++ CK G EA E+ N I+ G N T LL
Sbjct: 4 DGQGPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVD 63
Query: 167 -------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
++ G P FN I A C G++ +A L M + G +P ++ +I
Sbjct: 64 MNNVKDLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVID 123
Query: 220 KL 221
L
Sbjct: 124 GL 125
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG----------------------------- 132
G EA E+ ++ G KP+ TY +++ G
Sbjct: 24 GLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNNVKDLMVQNGMRPDRHVF 83
Query: 133 ------FCKVGRSNEAMELLNEAIERGVTQNVVT-----------------LIQLLQRLE 169
+CK GR +EA N+ + G ++VT + + Q ++
Sbjct: 84 NIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMID 143
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G P ITF +I GK KA L + M + G P+ + + +I +L
Sbjct: 144 DGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRL 195
>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
Length = 346
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 45/204 (22%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
R+L A R D + + + S++ G V + L+ L E D AV+
Sbjct: 123 RALCADRRAD--------QAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMG 174
Query: 97 -------------------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
+ GR E+ ++ + + G++PDV YT ++D CKVG
Sbjct: 175 EMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVG 234
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
++ +A +++ + RG+ NVV T+N +I +C G + +A+
Sbjct: 235 KAKKAHGVMDMMVRRGLEPNVV------------------TYNVLINCMCKEGSVKEAIG 276
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
+L M E G P +++ LIK L
Sbjct: 277 VLKKMSEKGVAPDVVTYNTLIKGL 300
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 52/157 (33%)
Query: 120 KPDVYTYTAIM-----------------------------------DGFCKVGRSNEAME 144
+P+ +YT +M G C ++A+E
Sbjct: 112 RPNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVE 171
Query: 145 LLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALC 187
L+ E E G+ NVV LLQ E G P + + +I +LC
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
VGK KA ++ +M G P+ ++++LI + ++
Sbjct: 232 KVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKE 268
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V+EA +L + G+ PDV TY ++ G V +EAM LL E + + Q+
Sbjct: 269 GSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGYIIQS 324
>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 418
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K G SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM----------------NGYIKLGNLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A ++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G PS
Sbjct: 410 DGYAPS 415
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYAPSVVT 418
>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
IFN I+K G + FN L+ L D E + + ++ +
Sbjct: 245 IFNEIRKRGLRPTTVSFNTLINGLCKSRNLD----------------EGFRLKKTMEENR 288
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
+ PDV+TY+ ++ G CK GR + A +L +E +RG+ N +T L+
Sbjct: 289 IYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAM 348
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L MG P + +N ++ LC VG ++KA L+ M G P + ++ LI
Sbjct: 349 NTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLI 405
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
G +E A E+ + +G+ D +TA++ GFC+ GR +A L E +E G+
Sbjct: 412 GDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATY 471
Query: 155 ---------TQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
NV +LL+ +++ GH P IT+N ++ LC G++ A +LL M
Sbjct: 472 TMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLN 531
Query: 205 HGKIPSRTSHDMLIK 219
G P ++++L++
Sbjct: 532 LGVTPDDITYNILLE 546
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG V +A +++ ++ G+KPD TYT ++DG+CK G AME+ E GV + V
Sbjct: 376 VGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVA 435
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + +E G P T+ VI C G + LL M
Sbjct: 436 FTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQ 495
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+G P ++++L+ L +Q
Sbjct: 496 INGHKPGVITYNVLMNGLCKQ 516
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 21/122 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ +++L ++ +G KP V TY +M+G CK G+ A LL + GVT
Sbjct: 482 GNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVT------ 535
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P IT+N +++ C GK LL L E G I + L+ +
Sbjct: 536 ------------PDDITYNILLEGHCKNGKAED---LLKLRNEKGLIVDYAYYTSLVSEY 580
Query: 222 DQ 223
++
Sbjct: 581 NK 582
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 18/107 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G P V Y +++ FCK G +A + NE +RG+ P T+
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLR------------------PTTV 259
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+FN +I LC + + L M E+ P ++ +LI L ++
Sbjct: 260 SFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKE 306
>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 644
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 35/195 (17%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E +D K P ++ VD + K + + D+ + + + G V + L+ + +
Sbjct: 274 EMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRS 333
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
E D AVK F +MV + G P+V++Y +++G+CK+ R ++AM L
Sbjct: 334 EMDEAVKVFD--MMVHK--------------GCAPNVFSYNTLINGYCKIERMDKAMYLF 377
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
E Q+L IP T+T+N +I LC VG++ A+ L M G
Sbjct: 378 EEMCR--------------QKL----IPNTVTYNTLIHGLCHVGRLQDAIALFREMVACG 419
Query: 207 KIPSRTSHDMLIKKL 221
+IP ++ +L+ L
Sbjct: 420 QIPDLVTYRILLDYL 434
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G A +L +++ +PDV Y ++ CK + +A L +E I +G++ N+VT
Sbjct: 193 GHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTC 252
Query: 162 IQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E H+ P I+ V+ ALC G + +A ++ +M++
Sbjct: 253 NSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQ 312
Query: 205 HGKIPSRTSHDMLI 218
G P ++ LI
Sbjct: 313 SGVEPDVVTYTALI 326
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ RV A+ +L + G +PD ++T ++ G C G+ EA+ L ++ I G +VV
Sbjct: 122 LNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVI 181
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
I+LL+ +E G+ P + + +I +LC + +A L M
Sbjct: 182 YATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMI 241
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P+ + + L+ L
Sbjct: 242 TKGISPNIVTCNSLVYAL 259
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-----GVTQ 156
G +E+A ++ N+ + GLKP+V+TY + G CK G +EA +L E E G T
Sbjct: 473 GELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTY 532
Query: 157 NVVT 160
N +T
Sbjct: 533 NTIT 536
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G + +L + + + P+ + T ++D CK G +A ++++ + GV +VVT
Sbjct: 262 LGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVT 321
Query: 161 LIQLLQ----RLEM-------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ R EM G P ++N +I C + ++ KA+ L M
Sbjct: 322 YTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMC 381
Query: 204 EHGKIPSRTSHDMLIKKL 221
IP+ +++ LI L
Sbjct: 382 RQKLIPNTVTYNTLIHGL 399
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRV-------------------EEAYEMLMNVK 115
+N L+ L + A+ F + G++ ++A +L ++
Sbjct: 392 YNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIE 451
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
L PD+ YT ++DG C+ G +A +L + +G+ NV T
Sbjct: 452 GSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWT 496
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L++ D+F+++ G +V +N + L G ++EA
Sbjct: 471 RAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKR----------------GLLDEAT 514
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ M + + D TY I GF + ++ A++LL E + RG + +V T L+ L
Sbjct: 515 KLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGML 574
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYT 127
DF+ + +D A+ + ++M+ G VEEA+ + + GL PD +TY
Sbjct: 260 DFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYG 319
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEM 170
A+M+G CK GR EA LL+E G+ NVV L+ + +
Sbjct: 320 ALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISA 379
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G P I ++N+I+ LC +G++ +A LL M + G P ++ L++
Sbjct: 380 GVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQ 428
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF------------- 94
+K E DI N + G + +++L+ L + + A K
Sbjct: 361 MKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDT 420
Query: 95 FSNH-LMVGRVEE-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F+ H LM G + A+E+L ++N G+ P+ YTY +++G C+ G S EA LL E
Sbjct: 421 FTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEE 480
Query: 149 AIERGVTQNVVTLIQL-LQRLEMGHI----------------PRTITFNNVIQALCGVGK 191
I G+ N L + + GHI P +N++I+ L VG+
Sbjct: 481 MISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGR 540
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
I +A + + G +P ++ LI
Sbjct: 541 IEEAEEYYAQVQKRGLVPDEFTYSGLI 567
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR+EEA E V+ GL PD +TY+ ++ G+CK +A +LL + + G+ N T
Sbjct: 538 VGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADT 597
Query: 161 LIQLLQ 166
LL+
Sbjct: 598 YTDLLE 603
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
+E A+ +L V+ +GL PD++ Y++++ G CK+ +A+ LL+E + G+ +V
Sbjct: 646 MEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNA 705
Query: 161 LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LI R L G +P +T+ +I C G I A L M + G
Sbjct: 706 LIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRG 765
Query: 207 KIPSRTSHDML 217
P +++L
Sbjct: 766 IAPDAFVYNVL 776
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E+A +L + +GL+P + Y A++DGFC+ G + A + + + +G+ N VT
Sbjct: 681 MEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTA 740
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L+ G P +N + + +AL L M+ G
Sbjct: 741 LIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG 800
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
G + A + ++ GL P+ TYTA++DG CK G +A +L + ++RG+
Sbjct: 714 GDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVY 773
Query: 155 ------TQNVVTLIQLL----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L Q L + G+ ++ F+ +++ C G++ + LL +M +
Sbjct: 774 NVLATGCSDAADLEQALFLTEEMFNRGYAHVSL-FSTLVRGFCKRGRLQETEKLLHVMMD 832
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
+P+ + + +I + +
Sbjct: 833 REIVPNAQTVENVITEFGK 851
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR------- 167
G+ PDVYTY+ ++ CK + A ++ E R N VT +I L R
Sbjct: 240 GIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 299
Query: 168 -------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ G P T+ ++ LC G++ +A LL M G P+ + L+
Sbjct: 300 FGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLV 357
>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 646
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 40/216 (18%)
Query: 49 KASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
KA E ++ F+ + D +V FN +L ++ + A KF+
Sbjct: 112 KAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQ 171
Query: 96 ----SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
+ +L++ G+++ A + + PDV+TY+ +M+G CK R +EA+ L
Sbjct: 172 PNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFL 231
Query: 146 LNEAIERGVTQNVVTLIQLLQRLE-----------------MGHIPRTITFNNVIQALCG 188
L+E G N VT L+ L G +P +T+N +I LC
Sbjct: 232 LDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCL 291
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
GK+ KAL LL M +P++ ++ +I L +Q
Sbjct: 292 KGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQ 327
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA + ++ +GLKPDV Y++++ G C VG ++ ++L E
Sbjct: 468 GRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYE------------- 514
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+Q E P +T+N + ALC + +A+ LL M + G P + ++ ++ L
Sbjct: 515 ---MQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETL 571
Query: 222 DQQ 224
++
Sbjct: 572 RER 574
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ E A + + G KP+V Y A +DG C+ + +EA ++L E + +G N T
Sbjct: 363 GKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTY 422
Query: 162 IQLLQRL-------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
L++ +M H + + ++ LC G++ +AL + M
Sbjct: 423 SSLMKGFFKKGDSQKAILVWKEMMSQDMRH--NVVCCSVLLNGLCESGRLREALTVWTHM 480
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P ++ +IK L
Sbjct: 481 LGEGLKPDVVAYSSMIKGL 499
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
R E+ +LM+++ G K + Y Y++++ G K G+S A+ L E E+G NVV
Sbjct: 329 RAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYG 388
Query: 160 TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
I L R L G +P T++++++ G KA+L+
Sbjct: 389 AFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILV 441
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 36/183 (19%)
Query: 75 FNDLLMALVMLNEQDTAVKFFS--------------NHLMVG-----RVEEAYEMLMNVK 115
+N ++ AL L + D AV F + LM G RV+EA +L ++
Sbjct: 177 YNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQ 236
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH--- 172
+G P+ T+ ++D K G + A +L++ +G N VT L+ L +
Sbjct: 237 AEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLD 296
Query: 173 --------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P +T+ +I L + + +L M E G+ + + LI
Sbjct: 297 KALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLI 356
Query: 219 KKL 221
L
Sbjct: 357 SGL 359
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A +L + + P+ TY I++G K R+ + + +L ERG N
Sbjct: 293 GKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIY 352
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G P + + I LC K +A +L M
Sbjct: 353 SSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLS 412
Query: 205 HGKIPSRTSHDMLIK 219
G +P+ ++ L+K
Sbjct: 413 KGFLPNAFTYSSLMK 427
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 36/218 (16%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
R+L +KA +KE ++F ++K G +N ++ L A+K
Sbjct: 225 RALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLD 284
Query: 97 NHLM-------------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
N L G +E A E+ + G +P+ YT+++ GF K G
Sbjct: 285 NMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSG 344
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFN 180
R EA L +E +E G +V+T ++ L EM G P +T+
Sbjct: 345 RMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYT 404
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+IQ L +G++ A ++ M HG P ++ L+
Sbjct: 405 TIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLL 442
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 87/217 (40%), Gaps = 36/217 (16%)
Query: 22 RSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA 81
+S +AAE+LD P L V K L E IF + +G + +N L+
Sbjct: 496 QSKAAAETLD----P-GLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILING 550
Query: 82 LVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141
L E RVE A+ +L +++ G PD TYT + G CK+G +
Sbjct: 551 LCRSREN--------------RVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDR 596
Query: 142 AMELLNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQ 184
A+++L EA RG +VV L L EM G P + +I
Sbjct: 597 AVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIIN 656
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
L V K+ A M G+ P+ ++ L++ L
Sbjct: 657 GLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQAL 693
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 18/139 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GRV A+ ++ + G PD TY ++DGFCK+GR +EA +LL+E + + N+
Sbjct: 413 IGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQL 472
Query: 161 LIQLLQRL-EMGHIPRTIT-----------------FNNVIQALCGVGKIHKALLLLFLM 202
L+ L + G + +T+ ++I LC G++ +A + M
Sbjct: 473 YSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRM 532
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P T++++LI L
Sbjct: 533 VSEGCKPDATTYNILINGL 551
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------- 154
R ++A +K KPD++T+ ++D CK G +A E+ +E + G
Sbjct: 169 RADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALH 228
Query: 155 TQNVVTLIQ----------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T V TL++ Q + G P I +N +I L G +AL +L M
Sbjct: 229 TAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLA 288
Query: 205 HGKIPSRTSHDMLIKKL 221
+P+ ++ +L+ L
Sbjct: 289 KACVPTEVTYGILVNSL 305
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+ A + + G PD Y I++G KV + +A + +E I +G V T
Sbjct: 627 GQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATY 686
Query: 162 IQLLQRL-------EMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+Q L E H + + ++ +I C K+ AL L M
Sbjct: 687 TALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMI 746
Query: 204 EHGKIPSRTSHDMLIKKL 221
G +P+ + L L
Sbjct: 747 SRGNVPTAVTSASLFDGL 764
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T+ F + G+ E+A E+L + G P T+TAI+DG K S + ++L+ E
Sbjct: 756 TSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814
>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
Length = 802
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 17/110 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE+A+ + +K+ G+ PDVYTYT ++D FCK G +A +E G + NVVT
Sbjct: 303 KVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYT 362
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
LL + ++ G P TIT++ ++ LC G+I KA
Sbjct: 363 ALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKA 412
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V +A E+L + ++G +P+ Y A++DGFCKVG+ + A E+ + G V T
Sbjct: 459 KVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYT 518
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ Q +E P +T+ +I LC +G+ KAL LL +M E
Sbjct: 519 SLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEK 578
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P+ ++ LI L +
Sbjct: 579 GCSPNVVTYTALIDGLGK 596
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++ A ++L + P+V TYTA++DG C++G +A++LL+ E+G + NVVT
Sbjct: 529 RLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYT 588
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ L G P +T+ +I C G + +A LL
Sbjct: 589 ALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLL 642
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 22/176 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA L + DIFN + G + ++ L+ L E A + ++ ++G +
Sbjct: 369 LKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTK--LIGTSDNV 426
Query: 108 YE--MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
D + P+V TY A++DG CK + +A ELL+ + G
Sbjct: 427 GSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCE---------- 476
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P I ++ +I C VGKI A + M + G +P+ ++ LI +
Sbjct: 477 --------PNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAM 524
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 19/185 (10%)
Query: 35 NPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
NP +D KA +++ F+ ++ G + +V + LL A
Sbjct: 320 NPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHA------------ 367
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+L ++ +A ++ + + G P+ TY+A++DG CK G +A E+ + I G
Sbjct: 368 ----YLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLI--G 421
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ NV + + P +T+ +I LC K+ A LL M +G P+
Sbjct: 422 TSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHII 481
Query: 214 HDMLI 218
+D LI
Sbjct: 482 YDALI 486
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 19/135 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G ++A ++L ++ G P+V TYTA++DG K G+ + +++L + +G N VT
Sbjct: 562 IGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVT 621
Query: 161 ---LI-------------QLLQRLEMGHIPRTIT-FNNVIQALCGVGKIHKALLLLFLMY 203
LI LL ++ + P+ + + +V+Q K +L LL +
Sbjct: 622 YRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGF--SKKFIASLGLLEELE 679
Query: 204 EHGKIPSRTSHDMLI 218
HG +P + +LI
Sbjct: 680 SHGTVPIAPVYGLLI 694
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
+L +++ G P Y ++D F K GR EA+EL E +E + N+ +
Sbjct: 674 LLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITS--------- 724
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ ++IQALC ++ KA L + G +P + LIK L
Sbjct: 725 ------KDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGL 770
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
+ +D + ++E+A+E+ + G+ P++ + ++ G KV + NEA++
Sbjct: 722 ITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQ 781
Query: 145 LLNEAIERGV 154
L + GV
Sbjct: 782 LCYSICDEGV 791
>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G V+ A E++ + +G PD+YTY +++ G CK+G +EA+++LN+ IER +
Sbjct: 314 TGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCS----- 368
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P T+T+N +I LC ++ +A L ++ G +P +++ LI+
Sbjct: 369 -------------PNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQG 415
Query: 221 L 221
L
Sbjct: 416 L 416
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 28/213 (13%)
Query: 34 ENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWS--VSDFNDLLMALVMLNEQDTA 91
+N R +A+ D+++ + +N++ DG S V + + L+ ++M E
Sbjct: 488 KNKRIAEAEEIFDQMELQGVSRNSVTYNTLI-DGLCKSERVEEASQLMDQMIM--EGLRP 544
Query: 92 VKFFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
KF N L+ G +++A +++ + +DG +PD+ TY ++ G CK GR A +LL
Sbjct: 545 DKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLL 604
Query: 147 NEAIERGVT---QNVVTLIQLLQR--------------LEMGHIPRTITFNNVIQALC-G 188
+G+ +IQ L R +E P +T+ V + LC G
Sbjct: 605 RTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQG 664
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G I +A+ + M E G +P +S ML + L
Sbjct: 665 GGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGL 697
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G+++EA +L ++ G +V TY ++DGFCK R EA E+ ++ +GV++N V
Sbjct: 455 GKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTY 514
Query: 160 -TLI-------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI QL+ ++ M G P T+N+++ C G I KA ++ M
Sbjct: 515 NTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMAS 574
Query: 205 HGKIPSRTSHDMLIKKL 221
G P ++ LI L
Sbjct: 575 DGCEPDIVTYGTLIAGL 591
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 17/129 (13%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLI- 162
A E+ +K G PD +TY ++D C G+ EA+ LL E G +NV+ TLI
Sbjct: 425 AMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLID 484
Query: 163 ------------QLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
++ ++E+ + R ++T+N +I LC ++ +A L+ M G P
Sbjct: 485 GFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRP 544
Query: 210 SRTSHDMLI 218
+ +++ L+
Sbjct: 545 DKFTYNSLL 553
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 33/187 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +K +++ + + ++G + + +N L+ L L E D AVK + M+ R
Sbjct: 313 KTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQ--MIER----- 365
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
P+ TY I+ CK + EA +L +G+ +V T L+Q L
Sbjct: 366 ---------DCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGL 416
Query: 169 --------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
EM G P T+N +I +LC GK+ +AL LL M G +
Sbjct: 417 CLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNV 476
Query: 212 TSHDMLI 218
+++ LI
Sbjct: 477 ITYNTLI 483
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 36/174 (20%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND-GLKPDVYT 125
G VS FN L+ AL ++ A+ +LM D GL PD T
Sbjct: 190 GIRPDVSTFNILIKALCRAHQIRPAI-----------------LLMEEMEDFGLLPDEKT 232
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQ----------------NVVTLIQLLQRLE 169
+T IM GF + G + AM + + +E G + ++ ++ +
Sbjct: 233 FTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMS 292
Query: 170 M--GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G P TFN ++ L G + AL ++ +M G P +++ LI L
Sbjct: 293 LREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGL 346
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 19/118 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++EA + + +K+D P+VYTYTA++ G C+ ++AM LL+E +ER +
Sbjct: 271 AGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCR-KNVHKAMGLLDEMLERNL------ 323
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P IT+N++I C G + A LL LM E G +P + ++ I
Sbjct: 324 ------------VPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFI 369
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++ AY +L +K GL PD TY +D CK R EA L + E GV+ NV+
Sbjct: 340 AGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIM 399
Query: 161 LIQLLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ ++G + P TFN +I LC G + +AL L M
Sbjct: 400 YSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMV 459
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+ G P+ + ++LI ++ +Q
Sbjct: 460 KMGLKPTVYTFNILIGRMLKQ 480
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 34/194 (17%)
Query: 44 FVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG 102
F+D + K++ ++E +F+S+ ++G + +V +M V+++ + VG
Sbjct: 368 FIDFLCKSNRVEEARRLFDSLTEEGVSANV------IMYSVLID----------GYCKVG 411
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+EA + + + P+ YT+ A++ G C G EA+ L ++ ++ G+ V T
Sbjct: 412 KVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFN 471
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R + G P T+N I+ C GK+ +A ++ M E
Sbjct: 472 ILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEE 531
Query: 206 GKIPSRTSHDMLIK 219
G P ++ LIK
Sbjct: 532 GVPPDDFTYTSLIK 545
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 19/138 (13%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK---------------- 93
A LKE + +F+ + K G +V FN L+ ++ + D A K
Sbjct: 445 AGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVART 504
Query: 94 ---FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
F + G+V+EA +M++ +K +G+ PD +TYT+++ + K+G + A ++L
Sbjct: 505 YNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMF 564
Query: 151 ERGVTQNVVTLIQLLQRL 168
+ + T + L+++L
Sbjct: 565 DADCEPSHHTFLSLIKQL 582
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 30/178 (16%)
Query: 58 DIFNSIKKDG-TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
DI + KD T S+ +N+LL L G V+E ++ +
Sbjct: 142 DICRKMSKDDITKLSLKCYNELLTLLARF----------------GLVDEMNQLYTEMLE 185
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----LIQLLQRLEMGH 172
+ + D+YT+ +++ +CK+G EA + + + I+ G++ + T ++ + ++
Sbjct: 186 EFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDS 245
Query: 173 IPRT---------ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
R +++N +I LC G+I +A+ L M + P+ ++ LIK L
Sbjct: 246 AFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGL 303
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 79 LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
L AL +L + T F L GRV+EA ++ +K GL PDV+TY++++ GFCK G
Sbjct: 604 LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 663
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+A EL +E +G+ N+ +N ++ LC G I +A L
Sbjct: 664 VEKAFELHDEMCLKGIAPNI------------------FIYNALVDGLCKSGDIQRARKL 705
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
M E G P ++ +I
Sbjct: 706 FDGMPEKGLEPDSVTYSTMI 725
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
G++EEA L+ ++ GLKPD T+ A + G+ K G+ EA + +E ++ G+
Sbjct: 522 GKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLY 581
Query: 155 ---------TQNVVTLIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
N++ + + +RL +G +P T + I L G++ +AL + + E
Sbjct: 582 TVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE 641
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P ++ LI +Q
Sbjct: 642 KGLVPDVFTYSSLISGFCKQ 661
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN--- 157
VG ++EA E+ ++ GL P+ YTYT I G C+ R NEA E + G+ +
Sbjct: 276 VGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNA 335
Query: 158 VVTLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI R + G IT+N +I LC GK+ KA +L M
Sbjct: 336 CSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMV 395
Query: 204 EHGKIPSRTSHDMLIK 219
G P+ + +LI+
Sbjct: 396 TLGCKPNSRTFCLLIE 411
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 37/178 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK-------------- 93
+K ++E + +F+ +K+ G V ++ L+ E + A +
Sbjct: 624 LKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 683
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F N L+ G ++ A ++ + GL+PD TY+ ++DG+CK EA L +E
Sbjct: 684 FIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHE 743
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+GV P + +N ++ C G + KA+ L M + G
Sbjct: 744 MPSKGVQ------------------PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 783
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA +L + G+ PD++ Y AI+ K G+ EA L E RG+
Sbjct: 487 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK------ 540
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +TF I GK+ +A M +HG +P+ + +LI
Sbjct: 541 ------------PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLI 585
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 98/236 (41%), Gaps = 46/236 (19%)
Query: 16 LVDSPSRSPSAAESLDL-KENP-RSLQAQRFV------DKIKASPLKERIDIFNSIKKDG 67
++D +S + AE+ L E P + +Q FV K +++ +++F + + G
Sbjct: 724 MIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 783
Query: 68 TNWSVSDFNDL-------------------LMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
++S FN L ++A ++ + T H G++EEA
Sbjct: 784 FATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEAN 842
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ ++ L D TYT++M G+ K+G+S+E L + + +GV
Sbjct: 843 LLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVK------------- 889
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
P +T+ VI A C + +A L + G + T HD+LI L ++
Sbjct: 890 -----PDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKR 940
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A +L+ + GL P+ + Y+ +++G C+VG +EA+EL E+G+
Sbjct: 242 GDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGL------- 294
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P T T+ + LC ++++A L M + G P + LI
Sbjct: 295 -----------VPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALI 340
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++E+A E+L + G KP+ T+ +++G+C+ A+ELL+E +R + + V+
Sbjct: 382 GKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 441
Query: 162 I----------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+LL+++ G P + ++ +I A G+I +A LL M
Sbjct: 442 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSC 501
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G P ++ +I L +
Sbjct: 502 SGVAPDIFCYNAIISCLSK 520
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L G +E +++ + + + DVYTYT ++ CK G A +L E E+G+
Sbjct: 204 LKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLN--- 260
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P ++ VI+ +C VG I +A+ L M E G +P+ ++ ++
Sbjct: 261 ---------------PNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIIT 305
Query: 219 KKL 221
L
Sbjct: 306 AGL 308
>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
IFN I+K G + FN L+ L D E + + ++ +
Sbjct: 245 IFNEIRKRGLRPTTVSFNTLINGLCKSRNLD----------------EGFRLKKTMEENR 288
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
+ PDV+TY+ ++ G CK GR + A +L +E +RG+ N +T L+
Sbjct: 289 IYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAM 348
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L MG P + +N ++ LC VG ++KA L+ M G P + ++ LI
Sbjct: 349 NTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLI 405
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG V +A +++ +K G+KPD TYT ++DG+CK G AME+ E GV + V
Sbjct: 376 VGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVA 435
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + +E G P T+ VI C G + LL M
Sbjct: 436 FTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQ 495
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+G P ++++L+ L +Q
Sbjct: 496 INGHKPGVITYNVLMNGLCKQ 516
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
G +E A E+ + +G+ D +TA++ GFC+ GR +A L E +E G+
Sbjct: 412 GDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATY 471
Query: 155 ---------TQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
NV +LL+ +++ GH P IT+N ++ LC G++ A +LL M
Sbjct: 472 TMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLN 531
Query: 205 HGKIPSRTSHDMLIK 219
G P ++++L++
Sbjct: 532 LGVTPDDITYNILLE 546
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 21/122 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ +++L ++ +G KP V TY +M+G CK G+ A LL + GVT
Sbjct: 482 GNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVT------ 535
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P IT+N +++ C GK LL L E G I + L+ +
Sbjct: 536 ------------PDDITYNILLEGHCKNGKAED---LLKLRNEKGLIVDYAYYTSLVSEY 580
Query: 222 DQ 223
++
Sbjct: 581 NK 582
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 18/107 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G P V Y +++ FCK G +A + NE +RG+ P T+
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLR------------------PTTV 259
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+FN +I LC + + L M E+ P ++ +LI L ++
Sbjct: 260 SFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKE 306
>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 418
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K G SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L M G P
Sbjct: 251 HCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A ++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYVPS 415
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 38/182 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
KA + E +D+ +K G V F L + + D A + F
Sbjct: 516 CKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHT 575
Query: 96 --SNHLMVGRVEEAYEMLMNVK------NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+ +++V E M M +K N G PD YTY ++DGFCK+G + +
Sbjct: 576 TATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKF-- 633
Query: 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
LL+ +E IP TF V+ LC K+H+A+ ++ LM + G
Sbjct: 634 ----------------LLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGI 677
Query: 208 IP 209
+P
Sbjct: 678 VP 679
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V +A ++ + G PD++TY ++DG+CK + + A E++N +G+T +V+T
Sbjct: 413 MGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVIT 472
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LL L E G P IT+N ++ +LC K+++A+ LL M
Sbjct: 473 YNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMK 532
Query: 204 EHGKIPSRTSHDMLI 218
G P S L
Sbjct: 533 SKGLKPDVVSFGTLF 547
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ + K G ++ FN + L D AV+ RV EA E L + N G
Sbjct: 238 LLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVR-------NSRVVEAEEYLRKMVNGG 290
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------------ 166
+PD TY +I+DG+CK G +A +L +A+ +G + T L+
Sbjct: 291 FEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAM 350
Query: 167 -----RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
L G P + +N +I+ L G I AL L+ M E+G +P+ +++++I L
Sbjct: 351 AVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGL 410
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 90/186 (48%), Gaps = 29/186 (15%)
Query: 59 IFNSIKKDGT-NWSVSDFND-----LLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ N KDG + +++ F D L ++V+ N T +K S G + A +++
Sbjct: 336 LINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYN---TLIKGLSQQ---GLILPALQLMN 389
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------- 161
+ +G P+++TY +++G CK+G ++A L+++AI +G ++ T
Sbjct: 390 EMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQL 449
Query: 162 -----IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+++ R+ G P IT+N ++ LC GK + + + M E G P+ +++
Sbjct: 450 KLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYN 509
Query: 216 MLIKKL 221
+++ L
Sbjct: 510 IIVDSL 515
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +A+++ M +++ G++ DVYTYT + FCK R A+ LL E G N V
Sbjct: 125 GYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAY 184
Query: 162 IQLLQRL----EMGH-------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L E H P + FN ++ LC G + ++ LL + +
Sbjct: 185 CTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLK 244
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ + ++ ++ L ++
Sbjct: 245 RGVCPNLFTFNIFVQGLCRE 264
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN-VVT 160
G V E+ +L V G+ P+++T+ + G C+ G A++R V + VV
Sbjct: 230 GLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREG-----------ALDRAVRNSRVVE 278
Query: 161 LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKA 195
+ L+++ G P +T+N++I C G + A
Sbjct: 279 AEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDA 314
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 34/213 (15%)
Query: 27 AESLDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
++ ++ K NP +D +K L E +++ + K + S+ ++ L+ M
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
+ R++EA +M + + PDV +Y+ ++ GFCK R +E MEL
Sbjct: 375 D----------------RLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMEL 418
Query: 146 LNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCG 188
E +RG+ N VT L+Q L EM G P +T+N ++ LC
Sbjct: 419 FREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 478
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
GK+ KA+++ + P+ +++++I+ +
Sbjct: 479 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 511
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + PDV+T++A++D F K G+ EA +L +E ++R + ++VT
Sbjct: 305 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ M P ++++ +I+ C ++ + + L M +
Sbjct: 365 SSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQ 424
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + ++ LI+ L Q
Sbjct: 425 RGLVGNTVTYTTLIQGLFQ 443
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN--------HLM 100
KA + E +++F + + G + + L+ L + D A + F ++M
Sbjct: 408 KAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIM 467
Query: 101 V-----------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G++E+A + ++ ++P +YTY +++G CK G+ + +L
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 527
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+GV P + +N +I C G +A L M E G +P
Sbjct: 528 SLKGVK------------------PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569
Query: 210 SRTSHDMLIK 219
+ ++ LI+
Sbjct: 570 NSGCYNTLIR 579
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L + + +F + K S+ +F+ LL A+ +N+ D +
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQ--------------- 106
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------- 165
++N G+ + YTY+ +++ FC+ + A+ +L + ++ G N+VTL LL
Sbjct: 107 -MQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165
Query: 166 ----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q G+ P T+TFN +I L K +A+ L+ M G P ++
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYG 225
Query: 216 MLIKKLDQQ 224
+++ L ++
Sbjct: 226 VVVNGLCKR 234
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A+ +L ++ L+P V YT I+DG CK ++A+ L E +G+ NVVT
Sbjct: 235 GDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTY 294
Query: 162 IQLL------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL I R I TF+ +I A GK+ +A L M +
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354
Query: 205 HGKIPSRTSHDMLI 218
PS ++ LI
Sbjct: 355 RSIDPSIVTYSSLI 368
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 22/139 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER----GVTQN 157
GRVEEA + +++ +G +PD + YTA++ G CK G+ EA L EA R +
Sbjct: 126 GRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPD 185
Query: 158 VVTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
VVT L+ L E G IP +T+ ++I LC +G++ +
Sbjct: 186 VVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERF 245
Query: 200 FLMYEHGKIPSRTSHDMLI 218
M G P ++ LI
Sbjct: 246 HEMRNRGYEPDAVTYAALI 264
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EAY + ++ G V TY+A+MDGFC G + A+EL ++RG N+V
Sbjct: 306 GRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLV-- 363
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++N +I+ LC GK+ KA + + P + + + L
Sbjct: 364 ----------------SYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGL 407
Query: 222 DQQ 224
Q+
Sbjct: 408 CQR 410
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GRVEE E ++N G +PD TY A++DGF K +A + + ++ G + VT
Sbjct: 235 LGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVT 294
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+L L E G + +T++ ++ C G + A+ L M
Sbjct: 295 YNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML 354
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ G P+ S++++I+ L
Sbjct: 355 DRGCEPNLVSYNIIIRGL 372
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA+ +L G +PD TY +DG CK R ++A +LL + E+ VT
Sbjct: 22 RLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYT 81
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ Q +E G+ P T+ VI L G++ +A + M +
Sbjct: 82 ALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGN 141
Query: 206 GKIPSRTSHDMLIKKL 221
G P + LIK L
Sbjct: 142 GCRPDAFVYTALIKGL 157
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V + E+ ++ + G P++++Y+ +MDG C+ G A+E+ E + RGV
Sbjct: 414 VSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVA-------- 465
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P + FN +I+ LC G++ +A L +F E P S+ L+ L +
Sbjct: 466 ----------PDVVVFNTLIRWLCIAGRVDEA-LEVFRELERRSAPDAWSYWSLLDGLSR 514
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQL 164
PD+ +T +++G C+ R +EA +L A+ G + VT QL
Sbjct: 5 PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64
Query: 165 LQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
L+++ E +P T+T+ ++ L G++ +A+ +L M E G P+ ++ ++I L +
Sbjct: 65 LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L GR++EA +L + G P + TYT ++DG K GR EA + + + G +
Sbjct: 88 LKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDA 147
Query: 159 VTLIQLLQRL---------------------EMGHIPRTITFNNVIQALCGVGKIHKALL 197
L++ L +P +T+ ++I LC G+I +A
Sbjct: 148 FVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQ 207
Query: 198 LL-FLMYEHGKIPSRTSHDMLIKKL 221
+ E G IP ++ +I L
Sbjct: 208 VFDDEAVERGFIPDAVTYTSIIDGL 232
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVY 124
+VSD +L ++V Q T+ S +++ G +E A E+ + + G+ PDV
Sbjct: 413 TVSDGVELFESMV---SQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVV 469
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGV--TQNVVTLIQLLQRLEMGHIPRTITFNNV 182
+ ++ C GR +EA+E+ E R + +L+ L R E R ++F+
Sbjct: 470 VFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWSYWSLLDGLSRCERMEEARLLSFHMK 529
Query: 183 IQALCGVGKIHKALLLLFL 201
+Q G H L + FL
Sbjct: 530 LQ---GCAPRHYDLTVRFL 545
>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
Length = 663
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +++A E++M + ++GL+PD TYT ++ C+ G EA + N+ I G+ + VT
Sbjct: 525 TGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVT 584
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ + LE G P IT+N +I ALC +G+ A + M
Sbjct: 585 YTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEML 644
Query: 204 EHGKIPSRTSHDMLI 218
E G +P++ ++ +LI
Sbjct: 645 ERGLVPNKYTYTLLI 659
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 18/121 (14%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L G++E A + ++ GL PDV TY ++++G+CK G EA+ L +
Sbjct: 348 LQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGD---------- 397
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L+R G P +T+N +I C +G + +A L M E G +P ++ +L+
Sbjct: 398 ------LRR--AGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILM 449
Query: 219 K 219
K
Sbjct: 450 K 450
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+ +G + +++++ + +G+ D TY ++DG CK G +A EL+ + I G+ +
Sbjct: 488 ITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDC 547
Query: 159 VTLIQLLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFL 201
+T L+ E G + P +T+ +I A C G ++ A
Sbjct: 548 ITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRK 607
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M E G P+ ++++LI L
Sbjct: 608 MLEEGVEPNEITYNVLIHAL 627
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 17/160 (10%)
Query: 79 LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
+ A+ +L + T + + G +EA + +++ GL P V TY ++DG+C++G
Sbjct: 363 MRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGD 422
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNN 181
EA L E +E+G +V T L+ + L G P +N
Sbjct: 423 LEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNT 482
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I A +G I K+ L ++ G ++++LI L
Sbjct: 483 RICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGL 522
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 36/218 (16%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
R+L +KA +KE ++F ++K G +N ++ L A+K
Sbjct: 225 RALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLD 284
Query: 97 NHLM-------------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
N L G +E A E+ + G +P+ YT+++ GF K G
Sbjct: 285 NMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSG 344
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFN 180
R EA L +E +E G +V+T ++ L EM G P +T+
Sbjct: 345 RMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYT 404
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+IQ L +G++ A ++ M HG P ++ L+
Sbjct: 405 TIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLL 442
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 37/200 (18%)
Query: 22 RSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA 81
+S +AAE+LD P L V K L E IF + +G + +N L+
Sbjct: 496 QSKAAAENLD----P-GLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILING 550
Query: 82 LVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141
L E RVE A+ +L +++ G PD TYT + G CK+G +
Sbjct: 551 LCRSREN--------------RVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDR 596
Query: 142 AMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
A+++L EA RG +VV + + LC G++ +A+ L
Sbjct: 597 AVKMLEEASSRGWNADVV------------------AYTALCTGLCYQGQVDRAVSLFQE 638
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M G P ++ +I L
Sbjct: 639 MVRQGGAPDAAAYCCIINGL 658
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 18/139 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GRV A+ ++ + G PD TY ++DGFCK+GR +EA +LL+E + + N+
Sbjct: 413 IGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQL 472
Query: 161 LIQLLQRL-EMGHIPRTIT-----------------FNNVIQALCGVGKIHKALLLLFLM 202
L++ L + G + T+ ++I LC G++ +A + M
Sbjct: 473 YSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRM 532
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P T++++LI L
Sbjct: 533 VSEGCKPDATTYNILINGL 551
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA + + G +PDV T+T ++DG CK G +A + E + G NVVT
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403
Query: 162 IQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++Q L G P ++T+ ++ C +G++ +A LL + +
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDK 463
Query: 205 HGKIPSRTSHDMLIKKL 221
P+ + L+K L
Sbjct: 464 CSSSPNLQLYSSLVKGL 480
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------- 154
R ++A +K KPD++T+ ++D CK G +A E+ +E + G
Sbjct: 169 RADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALH 228
Query: 155 TQNVVTLIQ----------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T V TL++ Q + G P I +N +I L G +AL +L M
Sbjct: 229 TAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLA 288
Query: 205 HGKIPSRTSHDMLIKKL 221
+P+ ++ +L+ L
Sbjct: 289 KACVPTEVTYGILVNSL 305
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+ A + + G PD Y I++G K + +A + +E I +G V T
Sbjct: 627 GQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATY 686
Query: 162 IQLLQRL-------EMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+Q L E H + + ++ +I C K+ AL L M
Sbjct: 687 TALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMI 746
Query: 204 EHGKIPSRTSHDMLIKKL 221
G +P+ + L L
Sbjct: 747 SRGNVPTAVTSASLFDGL 764
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 20/141 (14%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
IK L++ F+ + G +V+ + L+ AL D A F L G
Sbjct: 659 IKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGS 718
Query: 103 ---------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+V+ A ++ ++ + G P T ++ DG + G++ +A ELL
Sbjct: 719 VMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQ 778
Query: 148 EAIERGVTQNVVTLIQLLQRL 168
E G + T +L L
Sbjct: 779 EMAAGGSPPHAATFTAILDGL 799
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T+ F + G+ E+A E+L + G P T+TAI+DG K S + ++L+ E
Sbjct: 756 TSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLL-------------MALVMLNEQD------TAVK 93
LK+ ID+FN + + V FN L+ M+ +Q T
Sbjct: 248 LKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCS 307
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ +V V +A +L + G+ PD+ +Y ++DGFCK+ + +EAM L E +
Sbjct: 308 LMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKH 367
Query: 154 VTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKAL 196
+ +VVT L+ L ++G I P IT+++++ ALC ++ KA+
Sbjct: 368 IIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAI 427
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
LL + + G P+ ++ +LI L
Sbjct: 428 ALLTKLKDQGIRPNMYTYTILIDGL 452
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S VG++++A ++ + + +KPDVYT+ ++DGFCK G+ E +
Sbjct: 234 TYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMM 293
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+++G+ NVVT L+ + G P ++N +I C + K+
Sbjct: 294 MKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKV 353
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A+ L M+ IP +++ LI L
Sbjct: 354 DEAMNLFKEMHHKHIIPDVVTYNSLIDGL 382
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG A ++L V + ++P+V Y+ I+DG CK N+A +L +E + +G++ NVVT
Sbjct: 175 VGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVT 234
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
I L ++ + +I P TFN ++ C GK+ + + +M
Sbjct: 235 YSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMM 294
Query: 204 EHGKIPSRTSH 214
+ G P+ ++
Sbjct: 295 KQGIKPNVVTY 305
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 22/121 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVVT 160
+V++A +L +K+ G++P++YTYT ++DG CK GR +A + + + +G +T N T
Sbjct: 422 QVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYT 481
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
++ I C G +AL LL M ++ IP +++++I+
Sbjct: 482 VM--------------------IHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRS 521
Query: 221 L 221
L
Sbjct: 522 L 522
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLL 198
MG+ P TITF +I+ LC G+IH+ALL
Sbjct: 121 MGYHPNTITFTTLIKGLCLKGQIHQALLF 149
>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
Length = 653
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++E + ++ ++ GL+P+V TYT I++ FCK G A +L + G T NV T
Sbjct: 249 RMQEVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFT 308
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G P T+++N +I+ LC VG + A +L M +H
Sbjct: 309 ALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQH 368
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P+ ++ LI +
Sbjct: 369 GCFPNARTYSTLIDGFSK 386
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 30/176 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +++KDG +V +N L+ AL NH RV A +ML + G
Sbjct: 156 VCGNMRKDGVQPNVFTYNLLVRALC------------QNH----RVGAARKMLDEMATKG 199
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-------- 170
PD TY I+ C +GR +EA E+L+ A + N V ++ L + M
Sbjct: 200 CPPDDVTYGTIVSALCTLGRVDEATEVLSAAPPVAASYNAV-ILALCREFRMQEVFAVVG 258
Query: 171 -----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G P IT+ ++ A C G++ A +L M G P+ + L+ L
Sbjct: 259 DMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGL 314
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG ++ A +L +++ G P+ TY+ ++DGF K G + A+ + N+ G NVV
Sbjct: 352 VGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVV 411
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ + L P T+TFN +I++LC ++ +AL + M
Sbjct: 412 YTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMR 471
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
HG P+ +++ L+ L ++
Sbjct: 472 RHGCPPNGRTYNELLHGLFRE 492
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 76/182 (41%), Gaps = 33/182 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+ +F+ +++ G + +N+LL L G +A +M++ ++N
Sbjct: 464 LGVFHEMRRHGCPPNGRTYNELLHGL----------------FREGNCGDALQMVIEMQN 507
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ------------- 163
G++ + TY ++ G C++ EAM + I RG+ + T
Sbjct: 508 HGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRM 567
Query: 164 ---LLQRLEMGHIPRTITFNNVIQA-LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+L + + + R I ++ A LC K+ A++ L M G P+ + ++L++
Sbjct: 568 AAWILGAMNVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNVLVR 627
Query: 220 KL 221
+
Sbjct: 628 GV 629
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + ++ G KP+V YT ++ FCK N+A L+++ + N VT
Sbjct: 388 GDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTF 447
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ L EM G P T+N ++ L G AL ++ M
Sbjct: 448 NTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQN 507
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
HG S +++ ++ L Q
Sbjct: 508 HGIELSLVTYNTVVSGLCQ 526
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A +M + +G P +Y ++ G C VG A +LN+ + G N T
Sbjct: 318 GRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTY 377
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ G P + + N++ C ++A L+ M
Sbjct: 378 STLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLV 437
Query: 205 HGKIPSRTSHDMLIKKL 221
P+ + + LI+ L
Sbjct: 438 ENCPPNTVTFNTLIRSL 454
>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
Length = 532
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 37/222 (16%)
Query: 34 ENPRSLQAQRFVDKIKASPL-KERIDIFNSIKKDGTNWSVSDFNDLLMALV-------ML 85
+ P + +D + S E +IFNS+ + G + + LL M
Sbjct: 222 QRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMN 281
Query: 86 NEQDTAVK--FFSNH----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
N +D V+ SNH GR++EA + ++ G PD+ TYT ++DG
Sbjct: 282 NVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGL 341
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-----------------GHIPRT 176
CK+GR ++AM + I+ G++ N++T L+ M G P
Sbjct: 342 CKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDV 401
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
F +I L GK+ +A L LM G P+ S++ +I
Sbjct: 402 TIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMI 443
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+L G+ EA +L + DG +P+V TY ++D CK G EA E+ N I+ G
Sbjct: 200 GYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKP 259
Query: 157 NVVTLIQLLQR-------LEMGHIPRTI----------TFNNVIQALCGVGKIHKALLLL 199
+ T LL +EM ++ + TF+ I A C G++ +A L
Sbjct: 260 DATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTF 319
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M + G +P ++ +I L
Sbjct: 320 IKMQQLGFMPDIVTYTTVIDGL 341
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 19/138 (13%)
Query: 103 RVEEAYEMLMNVKNDG--LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ EEA E++ + DG PDV +Y+ ++ GF K G +A L + ++ G+ NVVT
Sbjct: 99 KCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVT 158
Query: 161 L---------IQ-------LLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+Q +LQ++ HI P T+N++I G+ +A+ +L M
Sbjct: 159 CNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMS 218
Query: 204 EHGKIPSRTSHDMLIKKL 221
G+ P+ +++MLI L
Sbjct: 219 RDGQRPNVVTYNMLIDCL 236
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +AY + + + G+ P+V T +++DG CKV ++A +L + I+ + N T
Sbjct: 135 GDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTY 194
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EM G P +T+N +I LC G +A + M +
Sbjct: 195 NSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQ 254
Query: 205 HGKIPSRTSHDMLI 218
G P T++ L+
Sbjct: 255 SGPKPDATTYGSLL 268
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 19/120 (15%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVV---TLIQ--------- 163
G PDV++Y+ ++ G C + EA EL++ E G +VV T+I
Sbjct: 79 GCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVG 138
Query: 164 -----LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L+ G P +T N+VI LC V + KA +L M + +P+ T+++ LI
Sbjct: 139 KAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLI 198
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA ++ + G KP+V +Y ++ G+ G E M+LL++ + G+ VT
Sbjct: 415 GKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTF 474
Query: 162 IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
LL + MG P T +I + C G+I L L
Sbjct: 475 NTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTLF 513
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 18/106 (16%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
+ PD+ T+ ++ C G N L + I+ G+ + V LL+ L
Sbjct: 9 VAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDAM 68
Query: 169 --------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
E+G P +++ +++ LC K +A L+ +M E G
Sbjct: 69 NIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDG 114
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL-LNEAIERGVTQNVVT 160
G + + L + GL+ D +T ++ C R+++AM + L E G T +V +
Sbjct: 27 GCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDAMNIVLRRMPELGCTPDVFS 86
Query: 161 LIQLLQRL----------EMGHI---------PRTITFNNVIQALCGVGKIHKALLLLFL 201
LL+ L E+ H+ P ++++ VI G + KA L
Sbjct: 87 YSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCK 146
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M +HG P+ + + +I L
Sbjct: 147 MLDHGIPPNVVTCNSVIDGL 166
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 45 VDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
+D++ K + E +F+ + + G +V +N ++ + E +K + L++G
Sbjct: 408 IDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGL 467
Query: 104 VEEAYE---MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
A +L + + GLKPDV T ++D C+ GR + + L E + + + +T
Sbjct: 468 KPTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTIT 527
>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 418
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I+K G SV FN L+ + ++ G +++ + + + G
Sbjct: 158 VFDAIRKWGLRPSVVSFNTLM----------------NGYIRQGDLDKGFRLKSAMHASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + +EA EL E +++G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLI 318
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A ++ + GLKPD TYT ++DG CK G A E IE + + V
Sbjct: 290 GDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P + T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGHVPS 415
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKPD TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 418
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L ID+ + K G + +N LL + D A+++ N
Sbjct: 364 LGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNT 423
Query: 99 LMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L+ G+V+ A E+L + + G P + TY ++DG KVG++ A+ELL E +G
Sbjct: 424 LLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKG 483
Query: 154 VTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKAL 196
+ +++T LL+ L G + P +T+N ++ LC + +A+
Sbjct: 484 LKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAI 543
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M E G P+ ++ +LI+ +
Sbjct: 544 DFLAYMVEKGCKPTEATYTILIEGI 568
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 17/138 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A ++L ++ G KPDV TY +++G CK GR +EA++ LN G NV+T
Sbjct: 259 VGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNI 318
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L+ L G P +TFN +I LC + +A+ +L M +HG
Sbjct: 319 ILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG 378
Query: 207 KIPSRTSHDMLIKKLDQQ 224
+P+ S++ L+ Q+
Sbjct: 379 CVPNSLSYNPLLHGFCQE 396
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR++EA + L N+ + G KP+V T+ I+ C GR +A LL++ + +G + +VVT
Sbjct: 292 GRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTF 351
Query: 161 --LIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R + G +P ++++N ++ C K+ +A+ L +M
Sbjct: 352 NILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVS 411
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 412 RGCYPDIVTYNTLLTAL 428
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ ++A ++ ++N G PDV TY ++ G+CK G ++A+E+L V +VVT
Sbjct: 155 GKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTY 211
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L ++L+ P IT+ +I+A C + +A+ LL M +
Sbjct: 212 NTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRK 271
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P ++++LI + ++
Sbjct: 272 KGCKPDVVTYNVLINGICKE 291
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EE + L + G PDV T+++ GFC+ G++ +A ++ G +V+T
Sbjct: 120 GELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITY 179
Query: 162 ----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+++L+R+ + P +T+N ++++LC GK+ +A+ +L +
Sbjct: 180 NVLIGGYCKSGEIDKALEVLERMSVA--PDVVTYNTILRSLCDSGKLKEAMEVLDRQLQR 237
Query: 206 GKIPSRTSHDMLIK 219
P ++ +LI+
Sbjct: 238 ECYPDVITYTILIE 251
>gi|297740791|emb|CBI30973.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 86/233 (36%), Gaps = 82/233 (35%)
Query: 53 LKERIDIFNSIKKDGTNWS-------------------------------------VSDF 75
L ID+FN +K DG NW+ +S +
Sbjct: 268 LDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELMEESRGGAGGRISPY 327
Query: 76 NDLLMALVMLNEQDTAVKF--------------------FSNHLMVGRVEEAYEMLMNVK 115
N ++ L N+ + A++F F N +G + Y+ ++
Sbjct: 328 NSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLRILGFCNEGSIGDAKRVYDQMIK-- 385
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
+G P V Y ++ GFC+ G EA EL+NE ++ G+ P
Sbjct: 386 -EGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDH------------------GYFPT 426
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH----DMLIKKLDQQ 224
TFN +I A CG GK+ AL L+ M G +P S+ D L K D Q
Sbjct: 427 APTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQ 479
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 34/204 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
+A +++ I + + I K G N S+ FN +L LV + D A +F+ +M+
Sbjct: 23 RARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVK-EDIDLAREFYRKKMMMNGVSGDD 81
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
R+ +A+++L +K+ G P+ Y ++ CK G+ A L+NE
Sbjct: 82 YTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNE 141
Query: 149 AIE-RGVTQNVV--------TLIQLLQRLE----MGHIPRTITFNNVIQALCGVGKIHKA 195
+E VT NV+ L+Q L LE MG +P +T V+ LC G++ +
Sbjct: 142 MVEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKAGRVTEG 201
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIK 219
+ +L + G + +++ LIK
Sbjct: 202 VEVLERVESMGGVVDVVAYNTLIK 225
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 36/188 (19%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
+S + P + A + V + KA + E +++ ++ G V +N L+ ML
Sbjct: 172 KSFSMGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCML- 230
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
G+ + + +L +++ G P+V TY + G+C G + A++L
Sbjct: 231 ---------------GKAKVGHRVLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLF 275
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE-H 205
N+ G+ N +T++ +I+ LC G++ +L LM E
Sbjct: 276 NDMKTDGINWNF------------------MTYDTLIRGLCSGGRMEDGFKILELMEESR 317
Query: 206 GKIPSRTS 213
G R S
Sbjct: 318 GGAGGRIS 325
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
R EE ML +K G +P Y A++D +C+ ++ EA ++LNE + G+ VT
Sbjct: 245 RGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCT 304
Query: 162 ---------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+++ + +++ G P T+N ++Q C VGK++KA+ LL M E
Sbjct: 305 AVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMREC 364
Query: 206 GKIPSRTSHDMLIK 219
G P ++++LI+
Sbjct: 365 GVEPDVVTYNLLIR 378
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 19/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ A + ++K G +P+V+TY A++ GFC VG+ +AM LL++ E GV +VVT
Sbjct: 314 GRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVT- 372
Query: 162 IQLLQRLEM--GHIPRTI----------------TFNNVIQALCGVGKIHKALLLLFLMY 203
LL R + GHI T+N +I ALC GK+ +A L +
Sbjct: 373 YNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLE 432
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P+ + + +I L
Sbjct: 433 YRGIRPNSVTFNTVINGL 450
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A+ +L ++ +GL D YTY ++D CK G+ +EA L + RG+
Sbjct: 384 GHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIR------ 437
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P ++TFN VI LC GK A L M G P ++ I+ L
Sbjct: 438 ------------PNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENL 485
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K + E +F+ ++ G + FN ++ L + D A F
Sbjct: 416 CKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTF------------- 462
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
L + + G PD YTY+ ++ CK S E + ++E +++ V + V ++ R
Sbjct: 463 ---LEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDR 519
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L +G P +T+ ++A C G++H+A ++ M + G I
Sbjct: 520 LFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVD 579
Query: 211 RTSHDMLI 218
+++ LI
Sbjct: 580 AMAYNTLI 587
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 13/106 (12%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNE----------AIERGVT--QNVVTLIQLL 165
G D +Y A+++GFC+ GR +EA+EL E A+ +G+ + + +L
Sbjct: 194 GFSQDAVSYAALIEGFCETGRVDEALELFRELEQPDMYTHAALVKGLCDARRGEEGLYML 253
Query: 166 QRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q++ E+G P T + ++ C K +A +L M+++G +P
Sbjct: 254 QKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPC 299
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI--- 173
G +PD +T+ +++ G+C+ + + A +L ++ RG +Q+ V+ L++ E G +
Sbjct: 159 GWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEA 218
Query: 174 ---------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T +++ LC + + L +L M E G P+ ++ L+
Sbjct: 219 LELFRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALV 272
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T+V+ + N GR+ EA ++M +K G+ D Y ++DG +G+++ A+ +L
Sbjct: 550 TSVRAYCNE---GRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKH 605
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 39/213 (18%)
Query: 32 LKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90
L+ +P ++ +D + K + E +F+ + G +V +N L+ L +
Sbjct: 175 LRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD---- 230
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
++E A+ M+ ++ + G+ PDV TY+ ++D FCK R +EA+ELL+
Sbjct: 231 ------------KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA 278
Query: 151 ERGVTQNV-----VTL-IQLLQRLEMGHI----------------PRTITFNNVIQALCG 188
RG T NV VT I + + G+ P +TF +I LC
Sbjct: 279 SRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCK 338
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G++ A +L LM G P+ +++ L+ L
Sbjct: 339 AGQVEAARDILDLMGNLGVPPNVVTYNALVHGL 371
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 41/215 (19%)
Query: 48 IKASPLKERIDIF-NSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------- 96
+A ++IF + +DG ++ +N ++ L N+ ++ F
Sbjct: 12 CRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPD 71
Query: 97 ----NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
N L+ G +EEA + ++ + G P+V TY+ +++G CKVGR +EA EL+
Sbjct: 72 VVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQ 131
Query: 148 EAIERG--VTQNVVTL----------------IQLLQRLEMGHI---PRTITFNNVIQAL 186
E + V N++T +L++ L G + P T+TF+ +I L
Sbjct: 132 EMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGL 191
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
C G+I +A + M G +P+ +++ L+ L
Sbjct: 192 CKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGL 226
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 33/150 (22%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
V+D+N +L +L + A++ F + DG+ P + TY I++
Sbjct: 1 VADYNIVLQSLCRAGDTARALEIFRGEM---------------ARDGVAPTIVTYNTIIN 45
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191
G CK MEL E +ER GH P +T+N +I +LC G
Sbjct: 46 GLCKSNDLGAGMELFEELVER------------------GHHPDVVTYNTLIDSLCKAGD 87
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +A L M G +P+ ++ +LI L
Sbjct: 88 LEEARRLHGDMSSRGCVPNVVTYSVLINGL 117
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 18 DSPSRSPSAAESL-DLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDF 75
D R+ + ES+ D P + VD KAS + E +++ + + G +V
Sbjct: 230 DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNV--- 286
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
++ ++ T + G E+A + + L+PDV T+ A++DG CK
Sbjct: 287 --------LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCK 338
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTIT 178
G+ A ++L+ GV NVVT L+ L EM G +P +IT
Sbjct: 339 AGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSIT 398
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +++ ALC + AL L+ + G P ++++L+ L
Sbjct: 399 YGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGL 441
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA + L + + G PD TY +++ C+ R+++A++L++E G + VT
Sbjct: 375 GRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTY 434
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM GH P + TF L G + + LL ++
Sbjct: 435 NILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLA 494
Query: 205 HGKIPSRTS 213
G +P T+
Sbjct: 495 KGMLPDATT 503
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 79 LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
L AL +L + T F L GRV+EA ++ +K GL PDV+TY++++ GFCK G
Sbjct: 316 LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGE 375
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+A EL +E +G+ N+ +N ++ LC G I +A L
Sbjct: 376 VEKAFELHDEMCLKGIAPNI------------------FIYNALVDGLCKSGDIQRARKL 417
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
M E G P ++ +I
Sbjct: 418 FDGMPEKGLEPDSVTYSTMI 437
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------ 154
G++EEA L+ ++ GLKPD T+ A + G+ K G+ EA + +E ++ G+
Sbjct: 233 AGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL 292
Query: 155 ----------TQNVVTLIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
N++ + + + L +G +P T + I L G++ +AL + +
Sbjct: 293 YTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 352
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
E G +P ++ LI +Q
Sbjct: 353 EKGLVPDVFTYSSLISGFCKQ 373
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 28/218 (12%)
Query: 16 LVDSPSRSPSAAESLDL-KENP-RSLQAQRFV------DKIKASPLKERIDIFNSIKKDG 67
++D +S + AE+ L E P + +Q FV K +++ +++F + + G
Sbjct: 436 MIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 495
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
++S FN L+ + +++EA ++ + + PD TYT
Sbjct: 496 FATTLS-FNTLI----------------DGYCKSCKIQEASQLFQEMIAKQIMPDHVTYT 538
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHIPRTITFNNVIQAL 186
++D CK G+ EA L E ER + V T+ L +++ G P +T+ VI A
Sbjct: 539 TVIDWHCKAGKMEEANLLFKEMQERNLI--VDTVFALFEKMVAKGVKPDEVTYGLVIYAH 596
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
C + +A L + G + T HD+LI L ++
Sbjct: 597 CKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKR 634
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 37/178 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK-------------- 93
+K ++E + +F+ +K+ G V ++ L+ E + A +
Sbjct: 336 LKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 395
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F N L+ G ++ A ++ + GL+PD TY+ ++DG+CK EA L +E
Sbjct: 396 FIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHE 455
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+GV P + +N ++ C G + KA+ L M + G
Sbjct: 456 MPSKGVQ------------------PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 495
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA +L + G+ PD++ Y AI+ K G+ EA L E RG+
Sbjct: 199 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK------ 252
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +TF I GK+ +A M +HG +P+ + +LI
Sbjct: 253 ------------PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLI 297
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA ++ GLKPD +A++DGF + G +E + + + + G+ N++T
Sbjct: 25 RMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYN 84
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L +G P + TF +I+ C + +AL LL M +
Sbjct: 85 VLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKR 144
Query: 206 GKIPSRTSHDMLIKKL 221
+PS S+ +I L
Sbjct: 145 NLVPSAVSYGAMINGL 160
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---VVTLIQLLQR------- 167
GL P+ YTYT I G C+ R NEA E + G+ + LI R
Sbjct: 5 GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 64
Query: 168 -------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ G IT+N +I LC GK+ KA +L M G P+ + +LI+
Sbjct: 65 LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIE 123
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++E+A E+L + G KP+ T+ +++G+C+ A+ELL+E +R + + V+
Sbjct: 94 GKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 153
Query: 162 I----------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+LL+++ G P + ++ +I G+I +A LL M
Sbjct: 154 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSC 213
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G P ++ +I L +
Sbjct: 214 SGVAPDIFCYNAIISCLSK 232
>gi|302780413|ref|XP_002971981.1| hypothetical protein SELMODRAFT_96362 [Selaginella moellendorffii]
gi|300160280|gb|EFJ26898.1| hypothetical protein SELMODRAFT_96362 [Selaginella moellendorffii]
Length = 294
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 97/213 (45%), Gaps = 22/213 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLN 86
L + R +A R +KA + +++ + K + N + + F+D L + L
Sbjct: 57 LCKTGRVPEANRLFGDMKAKFCNLDVIMYSCLIGGFCKLERINMACTLFDDTLKQAI-LP 115
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+ T + G V++A +L + PDVYTYT+++DGFCKVGR EA +L
Sbjct: 116 DVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVL 175
Query: 147 NEAIERGVTQNVV-TLI-------------QLLQRLEMGHIPRT--ITFNNVIQALCGVG 190
+RG NVV +LI ++L+RLE + + ++ LC G
Sbjct: 176 KRMAKRGCQPNVVWSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYQVMMDGLCTTG 235
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
++ AL LL + + G P + LI+ L Q
Sbjct: 236 RMSAALELLEAIKQSGTPPRHDIYVALIRGLCQ 268
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Query: 102 GRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +EEA +ML ++ D K D++ Y +MDG C GR + A+ELL EAI++
Sbjct: 199 GDLEEARKMLERLERDENCKADMFAYQVMMDGLCTTGRMSAALELL-EAIKQS------- 250
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
G PR + +I+ LC ++ KAL +L
Sbjct: 251 ----------GTPPRHDIYVALIRGLCQGKELGKALEVL 279
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 17/136 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M RV+ ++ ++ PD+ TY ++DG CK GR EA L + + +V+
Sbjct: 24 MANRVDPTLLLMEEMRATKCLPDIITYNTLIDGLCKTGRVPEANRLFGDMKAKFCNLDVI 83
Query: 160 TLIQL------LQRLEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLM 202
L L+R+ M +P +TF+ +++ C G + A LL M
Sbjct: 84 MYSCLIGGFCKLERINMACTLFDDTLKQAILPDVVTFSTLVEGYCNAGLVDDAERLLEEM 143
Query: 203 YEHGKIPSRTSHDMLI 218
P ++ L+
Sbjct: 144 VASDCSPDVYTYTSLV 159
>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 774
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + L+E + N + G ++ +N LL AL G+V +A
Sbjct: 427 KKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCK----------------NGKVPKAL 470
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
+ML + + G KPD++T+ ++ G CKV R +A+ L + + GV N VT L+
Sbjct: 471 DMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAF 530
Query: 168 LEMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
L G I IT+N +I+A C +G KAL L M +PS
Sbjct: 531 LRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSN 590
Query: 212 TSHDMLIKKL 221
S ++LI L
Sbjct: 591 ISCNLLINGL 600
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 37/196 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
++ ++E + + N + G +N L+ A L + A+ F
Sbjct: 531 LRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSN 590
Query: 96 -SNHLM------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
S +L+ VG+V A E+L ++ + GL PDV TY ++++G CK+G EA L N+
Sbjct: 591 ISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNK 650
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
G+ P IT+N +I C G A LLL E+ I
Sbjct: 651 LQAEGIQ------------------PDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFI 692
Query: 209 PSRTSHDMLIKKLDQQ 224
P+ + +L+ ++
Sbjct: 693 PNDVTWYILVSNFIKE 708
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 20/139 (14%)
Query: 102 GRVEEAYEMLMN--VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GR++EA L + +KN G +PDV+T+ ++ G CK G A++++N+ G T N++
Sbjct: 358 GRLDEANAFLYDKMIKN-GCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLI 416
Query: 160 TLIQLL-------QRLEMGHIPRTIT----------FNNVIQALCGVGKIHKALLLLFLM 202
T LL Q E G++ ++ +N +++ALC GK+ KAL +L M
Sbjct: 417 TYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEM 476
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ G P + + LI L
Sbjct: 477 SDKGCKPDIFTFNTLIFGL 495
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A +M+ ++ +G P++ TYT ++DGFCK + EA +LNE +G N++
Sbjct: 394 GLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGY 453
Query: 162 IQLLQRL-EMGHIPRTI----------------TFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+ L + G +P+ + TFN +I LC V + AL L M
Sbjct: 454 NVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLL 513
Query: 205 HGKIPSRTSHDMLI 218
G I + +++ LI
Sbjct: 514 DGVIANTVTYNTLI 527
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQL 164
YEML + G+ P VYT+ +M C V + A LL + + G N V TLI
Sbjct: 197 YEML----SKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHA 252
Query: 165 LQRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L + + MG +P TFN+VI LC + +IH+ L+ M G P+
Sbjct: 253 LSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPN 312
Query: 211 RTSHDMLIKKL 221
++ +L+ L
Sbjct: 313 DITYGVLMNGL 323
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 37/161 (22%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG--------------- 102
++F + G +V F ++ AL M+NE D A + G
Sbjct: 194 NVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHAL 253
Query: 103 ----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
RV EA ++L + G PDV T+ ++ G C++ R +E +L++ + RG T
Sbjct: 254 SKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFT--- 310
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
P IT+ ++ LC VGK+ +A +LL
Sbjct: 311 ---------------PNDITYGVLMNGLCRVGKVDEAQVLL 336
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 39/202 (19%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P S+ Q + + K + E + + + G V FND++ L LN
Sbjct: 241 PNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLN-------- 292
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
R+ E +++ + G P+ TY +M+G C+VG+ +EA LLN+
Sbjct: 293 --------RIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKV----P 340
Query: 155 TQNVVTLIQLL------------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
T N V L+ + ++ G P TFN +I LC G + A+
Sbjct: 341 TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAV 400
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
++ M +G P+ ++ L+
Sbjct: 401 DMVNDMSANGCTPNLITYTTLL 422
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 19/120 (15%)
Query: 106 EAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+A ML+++K +P +Y ++D + A + E + +GV
Sbjct: 155 QATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGV---------- 204
Query: 165 LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
IP TF V++ALC V ++ A LL M +HG +P+ + LI L ++
Sbjct: 205 --------IPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKR 256
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++EA E++ + N GL PDV TY+A++DG CK+G+ + A +LL E + GV + T
Sbjct: 354 QLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDA 413
Query: 163 QLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+L L G P +T+N ++ LC G+I +A+ L M
Sbjct: 414 SILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAA 473
Query: 206 GKIPSRTSHDMLIKKL 221
P S+ ++I L
Sbjct: 474 KCTPDVFSYTIIITAL 489
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----- 161
AYE ++ G PD +TY+ ++ G CK G ++A ELL + E GV NV+T
Sbjct: 57 AYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID 116
Query: 162 -----------IQLLQRLEMGH--IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+++ + + G +P +TFN++++ LC ++ +A +L M + G
Sbjct: 117 GCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCE 176
Query: 209 PSRTSHDMLIKKL 221
P+ S+ L+ L
Sbjct: 177 PNVISYSTLLDGL 189
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 34/166 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE 106
KAS + + ++IF ++ G V FN LL L R+ E
Sbjct: 119 CKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGE----------------RMSE 162
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A+ + + G +P+V +Y+ ++DG CK GR +EA L E +E+ ++V +
Sbjct: 163 AFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVT 222
Query: 167 RL-----------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
L G + F+ VI LC G +A
Sbjct: 223 GLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEA 268
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 37/193 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF------------- 94
KA L E ++ N + G + V ++ L+ L L + D A
Sbjct: 350 CKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDS 409
Query: 95 FSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F++ ++ G+V+ A L +K G PD+ TY ++DG CK GR +EA+ L +
Sbjct: 410 FTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAK 469
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ T P ++ +I ALC G+ A + M + G +
Sbjct: 470 MVAAKCT------------------PDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVL 511
Query: 209 PSRTSHDMLIKKL 221
P + L+ L
Sbjct: 512 PDTVLYHSLLDGL 524
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++ + ++K P++ TY ++D CK + +EA EL+NE G++ +VVT L+
Sbjct: 324 FQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDG 383
Query: 168 L--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L EM G P + T +++ AL GK+ AL L M G P
Sbjct: 384 LCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPD 443
Query: 211 RTSHDMLIKKL 221
+++ L+ L
Sbjct: 444 LVTYNTLLDGL 454
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 24/168 (14%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK------------------- 93
+ E +F + K G +V ++ LL L D A +
Sbjct: 160 MSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTS 219
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F + RV EA + + G K D ++ ++ CK G + EA + E + R
Sbjct: 220 FVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRS 279
Query: 154 --VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+ + T +++ R H P FN +I A+C ++ +LL
Sbjct: 280 GMLDEACKTFEEMISR---NHPPSAELFNTLIHAVCKSKRLPDGVLLF 324
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---------FSNHLMV-------G 102
IF + K G ++ LL L +D A++ F H MV G
Sbjct: 501 IFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLDGLCKAG 560
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+ E+A E++ + + G D +TY +++ G K+G+ ++A +L+++A E
Sbjct: 561 KAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASE 609
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 38/207 (18%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
NP +D + K +KE ++ + K+G +V +N L+ ++ E A +
Sbjct: 217 NPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQ 276
Query: 94 FFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F + G RV+EA +L V + + P+ TY++++DGFC
Sbjct: 277 MFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFC 336
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
K+GR A++LL E RG +VV T+ +++ ALC + K
Sbjct: 337 KLGRITSALDLLKEMYHRGQPADVV------------------TYTSLLDALCKNQNLDK 378
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A L M E G P++ ++ LI L
Sbjct: 379 ATALFMKMKERGIQPNKYTYTALIDGL 405
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 43/223 (19%)
Query: 8 SPTPFSV-LLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERID 58
+P +S +++D +S E+++L P ++ +D K + +D
Sbjct: 287 NPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALD 346
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ + G V + LL AL D A F M +K G
Sbjct: 347 LLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALF----------------MKMKERG 390
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
++P+ YTYTA++DG CK GR A +L + +G NV T
Sbjct: 391 IQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINV------------------WT 432
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +I LC G + +AL + M E+G IP + +++I+ L
Sbjct: 433 YNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSL 475
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EAY++ + G+ P+V TY+ ++ GFC G+ EA LLNE I + + NV T
Sbjct: 166 VNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTI 225
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L + G P +++N ++ C +G++ A + M + G
Sbjct: 226 LMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKG 285
Query: 207 KIPSRTSHDMLIKKL 221
P+ S++++I +L
Sbjct: 286 VNPNVYSYNIMIDRL 300
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 17/161 (10%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F+D ++A +Q + + +G A ++L +++ +P+V Y I+DG C
Sbjct: 102 FHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLC 161
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMGHI-PRTI 177
K NEA +L +E RG+ NV+T LL + + +I P
Sbjct: 162 KDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVY 221
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ ++ ALC GK+ +A LL +M + G P+ S++ L+
Sbjct: 222 TYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLM 262
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 78/167 (46%), Gaps = 33/167 (19%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
+ +FN ++ +LV + TA+ F M VK G++PD++T +++
Sbjct: 10 IMEFNKIVGSLVKMKHYPTAISLFKQ--------------MQVK--GIEPDLFTLNILIN 53
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-GHIPRTITFNN--------- 181
FC +G+ + +L + ++ G N +TL L++ L + G + +++ F++
Sbjct: 54 CFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQM 113
Query: 182 -------VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ LC +G+ AL LL ++ + P+ ++ +I L
Sbjct: 114 DQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGL 160
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G V+++ V G + D +Y +++G CK+G + A++LL +R NVV
Sbjct: 94 GEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMY 153
Query: 160 -TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T+I L + ++ G P IT++ +I C G++ +A LL M
Sbjct: 154 NTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMIL 213
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P+ ++ +L+ L ++
Sbjct: 214 KNINPNVYTYTILMDALCKE 233
>gi|449508786|ref|XP_004163411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Cucumis sativus]
Length = 464
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA ++ + +G KPD + Y IM G+C VGR EA+ + + E G+ +VVT
Sbjct: 247 LREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVGRGAEAIGVYKKMKEVGLEPDVVTFNT 306
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L EMGH P +T+ +++ +C G AL LL M G
Sbjct: 307 LIFGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMCREGNALGALSLLKEMEAKG 366
Query: 207 KIPSRTSHDMLIKKLDQQ 224
P+ +++ L+ L +
Sbjct: 367 CNPNSCTYNTLLHGLSKS 384
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 33/158 (20%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E I ++ +K+ G V FN L+ L GRV+EA L +
Sbjct: 284 EAIGVYKKMKEVGLEPDVVTFNTLIFGLSK----------------SGRVKEARNFLDIM 327
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI- 173
G PD TYT++M+G C+ G + A+ LL E +G N T LL L +
Sbjct: 328 AEMGHFPDAVTYTSLMNGMCREGNALGALSLLKEMEAKGCNPNSCTYNTLLHGLSKSRLL 387
Query: 174 ----------------PRTITFNNVIQALCGVGKIHKA 195
T +++ ++ALC G+I +A
Sbjct: 388 DRGIELYGLMKSCDMKLETASYSTFVRALCRSGRIAEA 425
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG V+EA E++ + PD+YTY ++ CK R ++
Sbjct: 173 VGLVDEAVELVKELSQKHTPPDIYTYNHLVKQLCK---------------SRALSTVYNF 217
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
++++ R G P +T+ +I +C + +A+ L+ L+Y+ G P ++ ++K
Sbjct: 218 IVEM--RSSCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPDCFVYNTIMK 274
>gi|449434442|ref|XP_004135005.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Cucumis sativus]
Length = 464
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA ++ + +G KPD + Y IM G+C VGR EA+ + + E G+ +VVT
Sbjct: 247 LREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVGRGAEAIGVYKKMKEVGLEPDVVTFNT 306
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L EMGH P +T+ +++ +C G AL LL M G
Sbjct: 307 LIFGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMCREGNALGALSLLKEMEAKG 366
Query: 207 KIPSRTSHDMLIKKLDQQ 224
P+ +++ L+ L +
Sbjct: 367 CNPNSCTYNTLLHGLSKS 384
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 33/158 (20%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E I ++ +K+ G V FN L+ L GRV+EA L +
Sbjct: 284 EAIGVYKKMKEVGLEPDVVTFNTLIFGLSK----------------SGRVKEARNFLDIM 327
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI- 173
G PD TYT++M+G C+ G + A+ LL E +G N T LL L +
Sbjct: 328 AEMGHFPDAVTYTSLMNGMCREGNALGALSLLKEMEAKGCNPNSCTYNTLLHGLSKSRLL 387
Query: 174 ----------------PRTITFNNVIQALCGVGKIHKA 195
T +++ ++ALC G+I +A
Sbjct: 388 DRGIELYGLMKSCDMKLETASYSTFVRALCRSGRIAEA 425
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG V+EA E++ + PD+YTY ++ CK R ++
Sbjct: 173 VGLVDEAVELVKELSQKHTPPDIYTYNHLVKQLCK---------------SRALSTVYNF 217
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
++++ R G P +T+ +I +C + +A+ L+ L+Y+ G P ++ ++K
Sbjct: 218 IVEM--RSSCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPDCFVYNTIMK 274
>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 418
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K G SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 191 FRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A ++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYVPS 415
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++EA E++ + N GL PDV TY+A++DG CK+G+ + A +LL E + GV + T
Sbjct: 354 QLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDA 413
Query: 163 QLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+L L G P +T+N ++ LC G+I +A+ L M
Sbjct: 414 SILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAA 473
Query: 206 GKIPSRTSHDMLIKKL 221
P S+ ++I L
Sbjct: 474 KCTPDVFSYTIIITAL 489
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----- 161
AYE ++ G PD +TY+ ++ G CK G ++A ELL + E GV NV+T
Sbjct: 57 AYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVID 116
Query: 162 -----------IQLLQRLEMGH--IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+++ + + G +P +TFN++++ LC ++ +A +L M + G
Sbjct: 117 GCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCE 176
Query: 209 PSRTSHDMLIKKL 221
P+ S+ L+ L
Sbjct: 177 PNVISYSTLLDGL 189
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 34/166 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE 106
KAS + + ++IF ++ G V FN LL L R+ E
Sbjct: 119 CKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGE----------------RMSE 162
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A+ + + G +P+V +Y+ ++DG CK GR +EA L E +E+ ++V +
Sbjct: 163 AFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVT 222
Query: 167 RL-----------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
L G + F+ VI LC G +A
Sbjct: 223 GLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEA 268
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 37/193 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF------------- 94
KA L E ++ N + G + V ++ L+ L L + D A
Sbjct: 350 CKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDS 409
Query: 95 FSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F++ ++ G+V+ A L +K G PD+ TY ++DG CK GR +EA+ L +
Sbjct: 410 FTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAK 469
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ T P ++ +I ALC G+ A + M + G +
Sbjct: 470 MVAAKCT------------------PDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVL 511
Query: 209 PSRTSHDMLIKKL 221
P + L+ L
Sbjct: 512 PDTVLYHSLLDGL 524
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++ + ++K P++ TY ++D CK + +EA EL+NE G++ +VVT L+
Sbjct: 324 FQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDG 383
Query: 168 L--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L EM G P + T +++ AL GK+ AL L M G P
Sbjct: 384 LCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPD 443
Query: 211 RTSHDMLIKKL 221
+++ L+ L
Sbjct: 444 LVTYNTLLDGL 454
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 24/168 (14%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK------------------- 93
+ E +F + K G +V ++ LL L D A +
Sbjct: 160 MSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTS 219
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F + RV EA + + G K D ++ ++ CK G + EA + E + R
Sbjct: 220 FVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRS 279
Query: 154 --VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+ + T +++ R H P FN +I A+C ++ +LL
Sbjct: 280 GMLDEACKTFEEMISR---NHPPSAELFNTLIHAVCKSKRLPDGVLLF 324
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 73/182 (40%), Gaps = 37/182 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------------F 95
KA + + ++K G+ + +N LL L D A+ F F
Sbjct: 421 KAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVF 480
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
S +++ G+ A+ + + G+ PD Y +++DG + G + A+ELL +
Sbjct: 481 SYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTS 540
Query: 150 IER----------------GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193
+ + G ++ +++ + + G T+ NV++ L +GK+
Sbjct: 541 LCKPDFVMHKMVVDGLCKAGKAEDACEVVERMA--DAGFPADAFTYINVVRGLRKLGKVD 598
Query: 194 KA 195
KA
Sbjct: 599 KA 600
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 35/192 (18%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E ++ K +P S+ +D K L + +F ++ G +V +N L+ L N
Sbjct: 293 EMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLC--N 350
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
E G++ EA +L + + LKP+V TY A+++G+CK EA EL
Sbjct: 351 E--------------GKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELF 396
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+ ++G+T NV ITFN ++ C GK+ +A LL +M E G
Sbjct: 397 DNIGKQGLTPNV------------------ITFNTLLHGYCKFGKMEEAFLLQKVMLEKG 438
Query: 207 KIPSRTSHDMLI 218
+P+ ++++ LI
Sbjct: 439 FLPNASTYNCLI 450
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 36/205 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV--------KFF----- 95
K L+E ++F++I K G +V FN LL + + A K F
Sbjct: 385 KKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNAS 444
Query: 96 -SNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+VG ++EE +L ++ G+K D TY ++ +C+ +A L++E
Sbjct: 445 TYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEM 504
Query: 150 IERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKI 192
+++G+ + +T LL M G +T+N +IQ C GK+
Sbjct: 505 LDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKL 564
Query: 193 HKALLLLFLMYEHGKIPSRTSHDML 217
A LL M E G IP+RT+++++
Sbjct: 565 EDANGLLNEMLEKGLIPNRTTYEII 589
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 74/138 (53%), Gaps = 20/138 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN---EAMELLNEAIERGVTQN 157
VG++ +A +++ ++K G P+V TY ++DG+CK+GR +A +L E +E V+ N
Sbjct: 243 VGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPN 302
Query: 158 VVTL----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
VT +++ + ++ G P +T+N+++ LC GK+++A +LL
Sbjct: 303 SVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLD 362
Query: 201 LMYEHGKIPSRTSHDMLI 218
M P+ +++ LI
Sbjct: 363 EMLSSNLKPNVITYNALI 380
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 36/171 (21%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
SV N LL ALV NE G VE Y+ ++ K + P++ T+ ++
Sbjct: 194 SVLSCNPLLSALVKENE-------------FGGVEFVYKEMIRRK---ISPNLITFNTVI 237
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-RLEMGHI---------------- 173
+G CKVG+ N+A +++++ G NVVT L+ +MG +
Sbjct: 238 NGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVEN 297
Query: 174 ---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P ++TFN +I C + AL + M G P+ +++ L+ L
Sbjct: 298 KVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGL 348
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + M G + A + ++ +G +V TY ++ G+C+ G+ +A LLNE +E+G
Sbjct: 519 LLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKG 578
Query: 154 VTQNVVTL-IQLLQRLEMGHIP 174
+ N T I + +E G +P
Sbjct: 579 LIPNRTTYEIIKEEMMEKGFLP 600
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +A +L + GL PDV T+ +++DG CK R +A + A+ERG NVVT
Sbjct: 487 GMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTY 546
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+QLL ++ E+G T+T++ V+ L VG++ A+++L M +
Sbjct: 547 STLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRD 606
Query: 205 HGKIPSRTSHDMLI 218
G +P +++ LI
Sbjct: 607 AGCLPDAVTYNTLI 620
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L VGR+E+A +L +++ G PD TY ++DGF K R EA+ LL E +E G +V
Sbjct: 589 LKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSV 648
Query: 159 VTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
VT L L G P IT+++++ LC G++ +AL
Sbjct: 649 VTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEAL 703
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A+ G +P V TY+ ++DG C+ ++ +LL E RG N VT
Sbjct: 15 GRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTY 74
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+R+ G P ITF +I+ LC G+I A ++ M +
Sbjct: 75 NTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVD 134
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P H +L+ L
Sbjct: 135 RGFVPDVEIHTVLLHAL 151
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EAYE L + G PDV T++ +++G C GR + +EL ERG ++
Sbjct: 733 GRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADI--- 789
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +I A C G+ A LL M HG + +H ++IK L
Sbjct: 790 ---------------YAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKAL 834
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 54/245 (22%)
Query: 7 NSPTPFS-VLLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKIKASPLKERID 58
+SPT F+ + VD S++ + + + ++ P ++ +D + + ++D
Sbjct: 207 SSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAG---KLD 263
Query: 59 IFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDTAVKFFS-----------NHLMVG---- 102
I + +D + + F+ LL L + + A++ N LM G
Sbjct: 264 IALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQA 323
Query: 103 -RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
RV+EA+E+ +K G DV TY ++ G CK+ R EA
Sbjct: 324 RRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYR----------------H 367
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH-----GKIPSRTSHDM 216
++L++R E G P +TF+ +IQ LC G++++A + +YE G P+R ++
Sbjct: 368 VELMRRTE-GCSPNVVTFSTLIQGLCNAGRVNQA----WEVYERMVAVEGISPNRFTYAF 422
Query: 217 LIKKL 221
L++ L
Sbjct: 423 LLEGL 427
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 21/161 (13%)
Query: 80 MALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
M L +L E ++ F+ + V G + AYE ++ G+ P+ TY A++DG
Sbjct: 197 MVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGL 256
Query: 134 CKVGRSNEAMELLNE-----------AIERGVTQ--NVVTLIQLLQRLEMGHIPRTITFN 180
CK G+ + A+ LL + ++ G+ Q + IQLL+ M +P + FN
Sbjct: 257 CKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLK--AMPCVPNVVCFN 314
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+++ LC ++ +A L +M E G ++++L+K L
Sbjct: 315 SLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGL 355
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +EA+ +L + +G P++ T+ I+ G CK G A +++E ++RG +V
Sbjct: 85 GRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIH 144
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL Q L +G P +T+N ++ L G++ A ++L L+ E
Sbjct: 145 TVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAE 204
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
P+ + + + L +
Sbjct: 205 SFSSPTVFTFTIAVDGLSK 223
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ +++EA ++L + G + + TY+ ++DG KVGR +A+ +L + + G + VT
Sbjct: 556 MAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVT 615
Query: 161 LIQLL------QR-----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ QR LE G P +T+ + LC G+ +A+ +L M
Sbjct: 616 YNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMA 675
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P+ ++ ++ L
Sbjct: 676 ARGCAPNAITYSSIVDGL 693
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 86/208 (41%), Gaps = 38/208 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF------------- 94
+A + E ++F+ +K+ G + V +N LL L L A +
Sbjct: 321 CQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPN 380
Query: 95 ---FSNHLM----VGRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
FS + GRV +A+E+ V +G+ P+ +TY +++G CK G S +
Sbjct: 381 VVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCF 440
Query: 147 NEAIERGVTQNV----------VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ +ER + ++Q+ + P +T+N ++ L G + AL
Sbjct: 441 EQMLEREWRSSSSWPIHSPEVDFLMVQVCR-------PTLVTYNTLVTGLSKSGMVRDAL 493
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LL M E G P + + ++ L ++
Sbjct: 494 GLLEFMIESGLSPDVITFNSVLDGLCKE 521
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EM 170
TY +++G CK GR +A +AI+ G VVT ++ L EM
Sbjct: 3 TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62
Query: 171 ---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G P +T+N ++ AL G G+ +A LL M +G P + ++IK L ++
Sbjct: 63 AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKE 119
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 37/141 (26%)
Query: 78 LLMALVMLNEQDTAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDG 118
LL AL L D A FF L++G R+E A +L +
Sbjct: 147 LLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESF 206
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
P V+T+T +DG K G A E + + GV+ P T+T
Sbjct: 207 SSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVS------------------PNTVT 248
Query: 179 FNNVIQALCGVGKIHKALLLL 199
++ +I LC GK+ AL LL
Sbjct: 249 YDALIDGLCKAGKLDIALGLL 269
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 42/195 (21%)
Query: 48 IKASPLKERID----IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
IKA +RID F+SI +D + +S +N L+ +LV R
Sbjct: 831 IKALCGNDRIDEAVSYFHSIPEDCRD-EIS-YNTLITSLVASR----------------R 872
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
E+A E+L + DG PD Y +MDG K G A +LL E RG + ++ T
Sbjct: 873 SEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTI 932
Query: 164 LLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ L P I ++++I A C K+ A LL G
Sbjct: 933 MISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLL---RSSG 989
Query: 207 KIPSRTSHDMLIKKL 221
P+ T + ++ L
Sbjct: 990 IEPTITMYSTMVDSL 1004
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QR------ 167
+P + TY ++ G K G +A+ LL IE G++ +V+T +L QR
Sbjct: 470 RPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHN 529
Query: 168 -----LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LE G P +T++ +I L + K+ +AL LL M E G + ++ ++ L
Sbjct: 530 VFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGL 588
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ A E+ + ++G++P+V TY +++ G C++GR ++A LL + ++RG+ NV+T
Sbjct: 203 LNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTA 262
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ ++M P T+ +I LC G++ +A + +LM +G
Sbjct: 263 LIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNG 322
Query: 207 KIPSRTSHDMLI 218
P+ ++ LI
Sbjct: 323 YYPNEVTYTTLI 334
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 36/202 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY--EM 110
E +D+F + S+ DF LL + + D + F ++G Y +
Sbjct: 63 FNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNI 122
Query: 111 LMNVKND-----------------GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+MN G +PD+ T+T+++ GFC R +A+ L ++ + G
Sbjct: 123 VMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMG 182
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
NVVT L+ L + G P +T+N+++ LC +G+ A
Sbjct: 183 FRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAA 242
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
LL M + G P+ + LI
Sbjct: 243 WLLRDMMKRGIQPNVITFTALI 264
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+E+A + + G +P+V TYT ++ CK N A+E+ N+ + G+ NVVT
Sbjct: 167 RIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYN 226
Query: 163 QLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L E+G P ITF +I A VGKI +A L +M +
Sbjct: 227 SLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQM 286
Query: 206 GKIPSRTSHDMLIKKL 221
P ++ LI L
Sbjct: 287 SVYPDVFTYTALINGL 302
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA +M ++++G P+ TYT ++ GFCK R + ++ E ++G+ N +T
Sbjct: 306 GRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITY 365
Query: 162 IQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLM 202
L+Q +MG P T+N ++ LC G + KAL++ M
Sbjct: 366 TVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYM 423
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER---------- 152
RVE+ ++ + GL + TYT ++ G+C VGR + A E+ N+ R
Sbjct: 342 RVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYN 401
Query: 153 ---------GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
G + + + + +++ EM +T+ +IQ +C VGK+ A L ++
Sbjct: 402 VLLDGLCYNGYVEKALMIFKYMRKREMD--INIVTYTIIIQGMCKVGKVEDAFDLFCSLF 459
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G P+ ++ +I ++
Sbjct: 460 SKGMKPNVITYTTMISGFCRR 480
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 17/133 (12%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ +VGR + A E+ + + PD+ TY ++DG C G +A+ + +R +
Sbjct: 371 GYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDI 430
Query: 157 NVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
N+VT ++Q + G P IT+ +I C G IH+A L
Sbjct: 431 NIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALF 490
Query: 200 FLMYEHGKIPSRT 212
M E G +P+ +
Sbjct: 491 KKMKEDGFLPNES 503
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 21/208 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNS-IKKDGTNWSVSDFNDLLMALV---MLNE 87
L N R +A+ F D + +K + I+ I T ++S+ +DLL +V + +
Sbjct: 318 LCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
F+ + ++EA + +K GL PDV + A++D CK+GR ++A+ N
Sbjct: 378 HHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFN 437
Query: 148 EAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVG 190
+ + GV N+ L+ + L G P + FN ++ LC G
Sbjct: 438 QMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKG 497
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ KA L+ LM G P S+ LI
Sbjct: 498 QVMKAQRLIDLMERVGTRPDVISYTTLI 525
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
H +VGR++EA + L + + GLKPD +TY ++ G+C+ GR ++A + E + G+T
Sbjct: 526 GGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGIT 585
Query: 156 QNVVTLIQLLQRL 168
VVT +L L
Sbjct: 586 PGVVTYSTILHGL 598
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQ 156
G+V++AY + + + + G++P+V TYT ++DG CK + A + + I++GV T
Sbjct: 217 GQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTY 276
Query: 157 NVVT-----------LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
N + ++++L+ + G P T+ +++ LC G+ +A M
Sbjct: 277 NCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIR 336
Query: 205 HGKIPSRTSHDMLI 218
G P+ + +LI
Sbjct: 337 KGIKPNVAIYGILI 350
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 17/152 (11%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+ DT +L +G+ +E ML + GLKPD YTY ++++ C GR EA
Sbjct: 272 DNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFF 331
Query: 147 NEAIERGVTQNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGV 189
+ I +G+ NV L+ +E G P FN + A
Sbjct: 332 DSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKK 391
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +A+ + M + G P + LI L
Sbjct: 392 AMIDEAMHIFNKMKQQGLSPDVVNFGALIDAL 423
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 37/181 (20%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNHLM 100
FN + +G ++ FN L+ L +++ + A +F+ N
Sbjct: 436 FNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCT 495
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+V +A ++ ++ G +PDV +YT ++ G C VGR +EA + L+ + G+
Sbjct: 496 KGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLK----- 550
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P T+N ++ C G+I A + M +G P ++ ++
Sbjct: 551 -------------PDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHG 597
Query: 221 L 221
L
Sbjct: 598 L 598
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 103 RVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLN---EAIERGVTQNV 158
R+ EA ++L+ + G PDV +Y ++ GFC R+ EA+ELL+ ++ R NV
Sbjct: 144 RLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNV 203
Query: 159 V---TLIQ--------------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
V T+I L+ ++ G P +T+ VI LC + +A +
Sbjct: 204 VSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQ 263
Query: 202 MYEHGKIPSRTSHDMLI 218
M + G P +++ LI
Sbjct: 264 MIDKGVKPDNDTYNCLI 280
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFN------DLLMALVMLNEQDTAV 92
++AQR +D ++ + R D+ + G + V + D+++++ + ++ T
Sbjct: 500 MKAQRLIDLMER--VGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYN 557
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
+ GR+++AY + + +G+ P V TY+ I+ G R +EA EL I
Sbjct: 558 TLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITS 617
Query: 153 GVTQNVVTL----------------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKA 195
G N+ +L Q L I TFN +I AL G+ A
Sbjct: 618 GKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDA 677
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ L + +G +P ++ ++ + L ++
Sbjct: 678 MHLFATISSYGLVPDVFTYCLIAENLIEE 706
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 80/187 (42%), Gaps = 27/187 (14%)
Query: 37 RSLQAQRFVDKIKASP---LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
R L+ +R + S L + + +F+ + S+ FN LL A+ ++ + ++
Sbjct: 11 RCLELERVIGSRARSGSLGLDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTT 70
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ L+V + ++ + PD+ TY+ ++ FC++GR ++ G
Sbjct: 71 --ESELVV----SLFNRMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSG 124
Query: 154 VTQNVVTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
N + + QLL+ L E+G P +++N +++ C + +A
Sbjct: 125 WRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEA 184
Query: 196 LLLLFLM 202
L LL +M
Sbjct: 185 LELLHMM 191
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------HL 99
E +++ ++ G W++ +N +L L N D A K F + ++
Sbjct: 604 FSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNI 663
Query: 100 MVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
M+G R E+A + + + GL PDV+TY I + + G E +L + + G
Sbjct: 664 MIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723
Query: 154 VTQNVVTLIQLLQR-LEMGHIPRTITF 179
T N L L++R L G I R +
Sbjct: 724 TTPNSRMLNALVRRLLHRGDITRAGAY 750
>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
virgata]
Length = 418
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+FN+I K G SV FN L+ + ++ +G ++E + + + G
Sbjct: 158 VFNAITKWGLRPSVVSFNTLM----------------NGYIRLGDLDEGFRLKSAMHASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A L +E +++G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 318
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 17/129 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPSRTS 213
G +PS S
Sbjct: 410 DGHVPSVVS 418
>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 418
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K G SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + +A EL E ++ G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYVPS 415
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA+E++ + G++PDV TYT +MDG C +EA+++ + + +G +V++
Sbjct: 289 GKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISY 348
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ H IP T T+N ++ LC VG++ A+ L M
Sbjct: 349 TTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVA 408
Query: 205 HGKIPSRTSHDMLIKKL 221
G++P ++ +L+ L
Sbjct: 409 RGQMPDLVTYSILLDSL 425
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG A +L +++ +PDV YT+I+D CK + EA L ++ + +G++ ++ T
Sbjct: 183 VGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFT 242
Query: 161 LIQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E H+ P + F+ V+ ALC GK+ +A ++ +M
Sbjct: 243 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 302
Query: 204 EHGKIPSRTSHDMLI 218
+ G P ++ L+
Sbjct: 303 QRGVEPDVVTYTTLM 317
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV A+ +L + G +PD T+T ++ G C G+ EA+ L ++ I+ G NVVT
Sbjct: 115 RVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYG 174
Query: 162 ---------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
I+LL+ +E G+ P + + ++I +LC ++ +A L M
Sbjct: 175 TLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ 234
Query: 206 GKIPSRTSHDMLIKKL 221
G P ++ L+ L
Sbjct: 235 GISPDIFTYTSLVHAL 250
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G+ P+VYT +++ FC + R A +L + L++GH P
Sbjct: 95 GVPPNVYTLNILINSFCHLNRVGFAFSVLAKI------------------LKLGHQPDPT 136
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TF +I+ LC GKI +AL L M + G P+ ++ LI L
Sbjct: 137 TFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGL 180
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------------- 148
G +E A ++ N+ + GL P V+TY ++ G CK G NEA +L E
Sbjct: 464 GELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTY 523
Query: 149 -AIERGVTQNVVTL--IQLLQRL 168
I RG QN TL IQLL+ +
Sbjct: 524 NTIARGFLQNNETLRAIQLLEEM 546
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 37/193 (19%)
Query: 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------------- 96
S + E + +F+ + + G V + L+ +++ D A+ F
Sbjct: 324 SEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTY 383
Query: 97 NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N LM VGR+++A + + G PD+ TY+ ++D CK EAM LL +AIE
Sbjct: 384 NTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALL-KAIE 442
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
N+ IQ+ +N +I +C G++ A L + G PS
Sbjct: 443 ---ASNLNPDIQV--------------YNIIIDGMCRAGELEAARDLFSNLSSKGLHPSV 485
Query: 212 TSHDMLIKKLDQQ 224
+++++I L ++
Sbjct: 486 WTYNIMIHGLCKR 498
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 41/170 (24%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGR---------------------VEEAYEMLMN 113
+N L+ L + A+ F H MV R +EEA +L
Sbjct: 383 YNTLMYGLCHVGRLQDAIALF--HEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKA 440
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
++ L PD+ Y I+DG C+ G A +L + +G+
Sbjct: 441 IEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLH------------------ 482
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P T+N +I LC G +++A L M + P +++ + + Q
Sbjct: 483 PSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQ 532
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L+ D+F+++ G + SV +N ++ L G + EA
Sbjct: 462 RAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKR----------------GLLNEAN 505
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++ M + + PD TY I GF + + A++LL E + RG + + L+
Sbjct: 506 KLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADSCFLM 559
>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
micromera]
Length = 431
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 33/187 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K ++ +F++I K G SV +N L+ + ++ +G ++E +
Sbjct: 154 KDGDIRVAXSVFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGF 197
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
+ + G++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 198 RLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGH 257
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
Q L +P IT+N +I LC G + +A L+ M G P +
Sbjct: 258 CKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDK 317
Query: 212 TSHDMLI 218
++ LI
Sbjct: 318 ITYTTLI 324
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G B A E IE + + V
Sbjct: 296 GDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAY 355
Query: 162 IQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L +G P T+ +I C G + K LL M
Sbjct: 356 TALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 416 DGHVPSVVTYNVLM 429
>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 989
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 85 LNEQDTAVKFFSNHL-MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
L E + N+L VGR++EA +++++ + G+ PD+ Y +++DG+ K G A+
Sbjct: 562 LEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAAL 621
Query: 144 ELLNEAIERGVTQNVV---TLIQLLQRL-------------EMGHIPRTITFNNVIQALC 187
++ E E+ + +VV LI+ L RL E+G P IT+N +I C
Sbjct: 622 SIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCITYNTIINTYC 681
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
GK AL +L M +G +P+ ++++LI L
Sbjct: 682 IKGKTEDALDILNEMKSYGIMPNAVTYNILIGGL 715
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 20/119 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ +EA E+ + L P+ TY+A++DG+CK+G+ MEL
Sbjct: 439 VGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGK----MELAE------------- 481
Query: 161 LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+LQ++E H+ P ITF+++I G + KA+ +L M + +P+ + +LI
Sbjct: 482 --LVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILI 538
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 41/166 (24%)
Query: 97 NHLMVGRVE-----EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L+ G E +A E++ N +K D+ TY ++ FCK G A L NE +
Sbjct: 236 NTLIDGYCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILG 295
Query: 152 RG-----------VTQNVV-----------TLI-------------QLLQRLEM-GHIPR 175
VTQN + TLI L +++ M G +P
Sbjct: 296 FWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPD 355
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+T ++++ C GK+ +A +L MYE G P+ S+ +I L
Sbjct: 356 VVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSL 401
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 87/204 (42%), Gaps = 42/204 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD------------------TAVKFFSNH 98
+ I +K+ + V +N L+ L+ L + D T + +
Sbjct: 621 LSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCITYNTIINTY 680
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG----------------RSNEA 142
+ G+ E+A ++L +K+ G+ P+ TY ++ G CK G RS +A
Sbjct: 681 CIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGFVPTPITHKFLVKAYSRSEKA 740
Query: 143 MELLN---EAIERG--VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
++L + + G + + V L ++++R G +T+N +I+ C + KAL
Sbjct: 741 DKILQIHEKLVASGLELKRQKVVLDEMVKR---GISADLVTYNALIRGYCTGSHVEKALK 797
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
M+ G P+ T+++ L+ L
Sbjct: 798 TYSQMFVDGIAPNITTYNTLLGGL 821
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
F H G++ EA + + GL P+ +Y I++ K GR EA L ++ + RG+
Sbjct: 366 FCRH---GKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGI 422
Query: 155 TQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALL 197
+ ++VT ++ L++ P +T++ ++ C +GK+ A L
Sbjct: 423 SFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAEL 482
Query: 198 LL 199
+L
Sbjct: 483 VL 484
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++ + +L + GL D T ++ G+C++G A ++ ++ GVT++V+ L
Sbjct: 176 GLVDQGFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGL 235
Query: 162 IQLL----QRLEMGHIPRTI-------------TFNNVIQALCGVGKIHKA 195
L+ + + M I T+N +++A C G + +A
Sbjct: 236 NTLIDGYCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRA 286
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 56/235 (23%)
Query: 9 PTPFS-VLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKAS--PLKERIDIFNSIKK 65
PTP + LV + SRS A + L + E K+ AS LK + + + + K
Sbjct: 722 PTPITHKFLVKAYSRSEKADKILQIHE------------KLVASGLELKRQKVVLDEMVK 769
Query: 66 DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------MVGRVEEA----- 107
G + + +N L+ + + A+K +S ++G + A
Sbjct: 770 RGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEE 829
Query: 108 -----YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++ + GL P+ TY ++ G+ +VG + T+I
Sbjct: 830 MMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKK------------------TII 871
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
++ + G +P T+N +I GK+ +A LL + G+IP+ ++D+L
Sbjct: 872 LHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDIL 926
>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 825
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+++A + + +P V+TYT ++DG CKV R EA LL E + +GV NVVT
Sbjct: 174 AGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVT 233
Query: 161 ----------------LIQLLQRLEMG-HIPRTITFNNVIQALCGVGKI-HKALLL 198
+ +LL+++E+ H P T+ V+ LC GK+ H A +L
Sbjct: 234 YNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVL 289
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 21/136 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR ++ ++L ++ PD +TYT ++ G CK G+ ++L+EAI +GV V+T
Sbjct: 245 GRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTY 304
Query: 161 ------------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
++QL++R + P TFN VI C GK+HKA+ L M
Sbjct: 305 NALINGYCKGGDMKAALDVLQLMKRNRVN--PGVQTFNEVIHGFCCGGKVHKAMAFLTQM 362
Query: 203 YEHGKIPSRTSHDMLI 218
G P+ + + LI
Sbjct: 363 AGAGLSPNTVTFNSLI 378
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
DL+ +L ++ T F G++EEA+ + + G+K YT+++ G+C+V
Sbjct: 395 DLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQV 454
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
G + A L+ E+ ++N +P T+N +I LC V ++ +A+
Sbjct: 455 GDIDSAFGLM----EKMASENC--------------MPDVHTYNTLIDGLCKVKRLDRAI 496
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
LL M + G P+ + ++LIK++
Sbjct: 497 DLLDKMKKQGIEPTTCTFNILIKQM 521
>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 724
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 17/147 (11%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + H G + AYE++ + ++G +P++YTY A++D CK R+ EA ELLN+
Sbjct: 417 NTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNK 476
Query: 149 AIERGVTQNVVTLIQLLQ-RLEMGHIPRTITF---------------NNV-IQALCGVGK 191
A G+ + VT L+Q + + I + + F NN+ I A C K
Sbjct: 477 AFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKK 536
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ ++ L L+ G +P++ ++ +I
Sbjct: 537 MKESERLFQLVVSLGLVPTKETYTSMI 563
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NVVT 160
G +++A+EML + +G KP+VYT+TA++DG CK G + +A L + + + + NV T
Sbjct: 324 GSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHT 383
Query: 161 LIQL---------LQRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ L R EM G P T+ +I C G +A L+ LM
Sbjct: 384 YTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMD 443
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+ G P+ +++ +I L ++
Sbjct: 444 DEGFRPNIYTYNAVIDSLCKK 464
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G E+A+ + + V++D KP+V+TYT+++ G+CK + N A L + E+G+ NV T
Sbjct: 359 GWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNT 418
Query: 161 LIQLL----------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + E+ G P T+N VI +LC + +A LL +
Sbjct: 419 YTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAF 478
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G ++ +LI++ +Q
Sbjct: 479 SCGLEADGVTYTILIQEQCKQ 499
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V A + + G KP++ +T+++DG CK G +A E+L E + G NV T
Sbjct: 289 GLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTH 348
Query: 162 IQLLQRL-EMG-----------------HIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L + G + P T+ ++I C K+++A +L M
Sbjct: 349 TALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMK 408
Query: 204 EHGKIPSRTSHDMLI 218
E G P+ ++ LI
Sbjct: 409 EQGLFPNVNTYTTLI 423
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 21 SRSPSAAESLDLKENPRSLQAQRFV------DKIKASPLKERIDIFNSIKKDG------- 67
SR+P A E L+ K L+A ++ K S +K+ + F + K G
Sbjct: 465 SRAPEAYELLN-KAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRL 523
Query: 68 TNWSVSDFN------------DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
N ++ F L+++L ++ ++T S + G + A + N+K
Sbjct: 524 NNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMK 583
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
G PD +TY +++ G CK +EA +L I+RG++ VT + L
Sbjct: 584 RHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTL 632
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 52/176 (29%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD---------------------GFC----- 134
+GR+ EA M+M+++N GL P T +++ G C
Sbjct: 183 IGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSS 242
Query: 135 ---------KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----------------- 168
+ G+ EA L+ I+RG + T +L L
Sbjct: 243 FKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMI 302
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
++G P I F ++I LC G I +A +L M +G P+ +H LI L ++
Sbjct: 303 DLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKR 358
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 35/195 (17%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E ++ K P + VD + K + E D+ + + K G +V +N L+ + +
Sbjct: 259 EMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRS 318
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
E D AVK F MV + G PDV +Y+ +++G+CK+ R +AM L
Sbjct: 319 EMDEAVKVFDT--MVCK--------------GFAPDVVSYSTLINGYCKIQRIEKAMYLF 362
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
E + + IP T+T++ ++ LC VG++ A+ L M G
Sbjct: 363 EEMCRKEL------------------IPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG 404
Query: 207 KIPSRTSHDMLIKKL 221
+IP S+ +L+ L
Sbjct: 405 QIPDFVSYCILLDYL 419
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG A +L +++ +PDV YT+I+D CK + +A L +E I +G++ ++ T
Sbjct: 177 VGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFT 236
Query: 161 LIQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E H+ P + F+ V+ ALC GK+ +A ++ +M
Sbjct: 237 YNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMI 296
Query: 204 EHGKIPSRTSHDMLI 218
+ G P+ +++ L+
Sbjct: 297 KRGVEPNVVTYNALM 311
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ E + + +G +P+V TY +++G CKVG ++ A+ LL ++E+G Q
Sbjct: 143 GKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLL-RSMEQGNCQ----- 196
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P + + ++I +LC ++ +A L M G PS +++ LI L
Sbjct: 197 ------------PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHAL 244
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
S++DF LL+++ T +K +S L + +++ G+ P++YT ++
Sbjct: 58 SIADFTKLLISI-------TKMKHYSTVLSLSHQMDSF---------GIPPNIYTLNILI 101
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190
+ FC + R A +L + L++GH P TFN +I+ LC G
Sbjct: 102 NSFCHLQRLGFAFSVLAKI------------------LKLGHQPNIATFNTLIRGLCVEG 143
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KI + L L M G P+ ++ LI L
Sbjct: 144 KIGEVLHLFDKMIGEGFQPNVVTYGTLINGL 174
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +E A ++ N+ + GL P+V+TYT +++G C+ G EA +L E +G + N T
Sbjct: 458 GELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCT 516
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +L ++ + PD+ YT ++DG C+ G A +L + +G+ NV
Sbjct: 424 RLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNV---- 479
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T+ +I LC G + +A L M G P+ +++++ +
Sbjct: 480 --------------WTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITR 522
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR+++A + + G PD +Y ++D CK R +EA+ LL +AIE N+
Sbjct: 387 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALL-KAIE---GSNMDP 442
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
IQ+ + VI +C G++ A L + G P+ ++ ++I
Sbjct: 443 DIQI--------------YTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMING 488
Query: 221 LDQQ 224
L QQ
Sbjct: 489 LCQQ 492
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+++A ++ G+K +V+TY +++ FC GR ++ +LL + I R +T NVVT
Sbjct: 279 GRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTF 338
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P TIT+N++I LC ++ +A ++ LM
Sbjct: 339 SALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVS 398
Query: 205 HGKIPSRTSHDMLI 218
G P ++++LI
Sbjct: 399 KGCDPDIWTYNILI 412
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 33/174 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K L E D++N + G + +N L+ L N++ R++EA
Sbjct: 346 VKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLC--NDK--------------RLDEA 389
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+M+ + + G PD++TY +++GFCK + ++ M L + RG+ + VT L+Q
Sbjct: 390 NQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQG 449
Query: 168 L--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
EM G P +T+ ++ LC G++ +AL +L M++
Sbjct: 450 FCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHK 503
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 23/145 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G A ++L +++ +KP V TYT I+D CK GR ++A+ +E +G+ NV T
Sbjct: 244 GNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTY 303
Query: 162 ----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
QLL+ + I P +TF+ +I +L GK+ +A L M
Sbjct: 304 NSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMIT 363
Query: 205 HGKIPSRTSHDMLI------KKLDQ 223
G P+ +++ LI K+LD+
Sbjct: 364 RGIEPNTITYNSLIYGLCNDKRLDE 388
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV EA +++ + +G +P+ +TY I++ CK G + A++LL + R + +VVT
Sbjct: 210 RVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYT 269
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++ L EM G T+N++I + C G+ LL M
Sbjct: 270 IIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITR 329
Query: 206 GKIPSRTSHDMLIKKL 221
P+ + LI L
Sbjct: 330 KITPNVVTFSALIDSL 345
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 25/152 (16%)
Query: 77 DLLMALVMLNE-QDTAVKFFSNHLMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAI 129
DL++AL E + A ++ ++M+ ++ A+ + + G +P+ T+ +
Sbjct: 107 DLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTL 166
Query: 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189
++G C GR EA+EL++ + L Q H+P IT N ++ LC
Sbjct: 167 LNGLCLEGRVFEAVELVD----------CMVLSQ--------HVPDLITLNTIVNGLCLK 208
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ +A+ L+ M +G P++ ++ ++ ++
Sbjct: 209 DRVSEAVDLIARMMANGCQPNQFTYGPILNRM 240
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
GRV EA E++ + PD+ T I++G C R +EA++L+ + G
Sbjct: 174 GRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTY 233
Query: 155 ---------TQNVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ N + + LL+++E I P +T+ +I LC G++ AL M
Sbjct: 234 GPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMET 293
Query: 205 HGKIPSRTSHDMLI 218
G + +++ LI
Sbjct: 294 KGIKANVFTYNSLI 307
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H + G++ +A +L ++K GL PDV +Y+ ++ GFC+ +EA+ + + + +G+
Sbjct: 423 NGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIK 482
Query: 156 QNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+ +T L+Q L +G P T+ +I A C G + KA+ L
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQL 542
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQQ 224
M E G +P ++ +LI L++Q
Sbjct: 543 HNEMVEKGVLPDVVTYSVLINGLNKQ 568
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 91/203 (44%), Gaps = 36/203 (17%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMVG- 102
++F + + + +V +N L+ + D A++FF N L+ G
Sbjct: 191 NVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGY 250
Query: 103 ----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
++++ +E+L ++ GL+P++ +Y +++G C+ GR E +L E +RG + +
Sbjct: 251 CKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDE 310
Query: 159 VT-----------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
VT L+ + L G P IT+ ++I ++C G +++A L
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQ 370
Query: 202 MYEHGKIPSRTSHDMLIKKLDQQ 224
M G P+ ++ L+ Q+
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQK 393
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +S+ K G ++F D + + + T G + EAY +L + ++G
Sbjct: 351 LIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNG 410
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
P V TY A+++G C G+ +A+ +L + E+G+T +VV+ +L
Sbjct: 411 FSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEAL 470
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ + G P TIT++++IQ C + +A L M G P ++ LI
Sbjct: 471 RVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALI 527
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 18/117 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R +EA ++ + GL PD +TYTA+++ +C G +A++L NE +E+GV
Sbjct: 500 RTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGV-------- 551
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+P +T++ +I L + +A LL ++ +PS ++ LI+
Sbjct: 552 ----------LPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIE 598
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 32/184 (17%)
Query: 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132
D D ++ + + ++ T + + M G +++A ++ + G+ PDV TY+ +++G
Sbjct: 505 CDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLING 564
Query: 133 FCKVGRSNEAMELL-----NEAIERGVT-------------QNVVTLI------------ 162
K R+ EA LL E++ VT ++VV+LI
Sbjct: 565 LNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEA 624
Query: 163 -QLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
Q+ + LE H P +N +I C G I KA L M + G + + L+K
Sbjct: 625 DQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKT 684
Query: 221 LDQQ 224
L ++
Sbjct: 685 LHKE 688
>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 418
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV FN L+ + ++ +G + E + + ++ G
Sbjct: 158 VFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLNEGFRLKNAMQASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 22/153 (14%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V ++ +M+G+ K+G NE L N
Sbjct: 137 YFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNA 196
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
GV +V T L+ + L+ G +P +TF +I C G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGR 256
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G T+ +I C G + L+ M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYVPS 415
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLK ++ TYT I++ FCK G +L+ E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418
>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 36/212 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV--------------MLNEQDTAVKF 94
K + E +F+++ DG + +N L+ AL+ ML T K
Sbjct: 507 KVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKI 566
Query: 95 FSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ VG +E+ E+ + DGL D + +++G CKVG+ + A E L +A
Sbjct: 567 TYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDA 626
Query: 150 IERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
I RG ++VT + L RL++ G P T+N I C G +
Sbjct: 627 INRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMV 686
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A L + E+G +PS + ++L+ L +Q
Sbjct: 687 NDACLFFYRGIENGFVPSNLTWNVLVYTLLKQ 718
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 96 SNHLMVGRVEEAYEML-MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ ++M G+++EA L + N G +PD++TY +M G CK G + A +L+NE RG
Sbjct: 362 NGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGC 421
Query: 155 TQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALL 197
NV+T L+ L EM G ++ +N +I ALC K+H AL
Sbjct: 422 EPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALN 481
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
LL M G P +++ LI L
Sbjct: 482 LLSEMCTKGCKPDLFTYNSLIYGL 505
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
+V A +L + G KPD++TY +++ G CKV R +EA L + + G N V
Sbjct: 475 KVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYN 534
Query: 160 TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
TLI L R L G IT+N +I+A C VG I K L L M
Sbjct: 535 TLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMD 594
Query: 206 GKIPSRTSHDMLIKKL 221
G S +++I L
Sbjct: 595 GLGADTISCNIMINGL 610
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQL 164
Y+ML + G+ P V+T+ +M C + A LL + + G N + TLI
Sbjct: 207 YDML----SKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHA 262
Query: 165 LQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L + MG +P TFN+VI LC V KIH A L+ M G P
Sbjct: 263 LSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPD 322
Query: 211 RTSHDMLIKKL 221
++ L+ L
Sbjct: 323 NMTYGFLLHGL 333
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 37/157 (23%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG--------------- 102
++F + G + +V F ++ AL M NE D+A + G
Sbjct: 204 NVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHAL 263
Query: 103 ----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+V EA ++L + G PDV T+ ++ G CKV + ++A +L++ + R
Sbjct: 264 SQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLR------ 317
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
G P +T+ ++ LC +GK+++A
Sbjct: 318 ------------GFYPDNMTYGFLLHGLCRIGKLNEA 342
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 31/201 (15%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P S+ Q + + + + + E + + + G V FND++ L +N+ A K
Sbjct: 251 PNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKL 310
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL------NE 148
L+ G PD TY ++ G C++G+ NEA ++L N
Sbjct: 311 VDRMLL----------------RGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNN 354
Query: 149 AIERGVTQNVVTLIQLLQR--------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
AI + V QL + + G P T+N ++ LC G + A L+
Sbjct: 355 AILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVN 414
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G P+ ++ +L+ L
Sbjct: 415 EMSRRGCEPNVITYAILVNGL 435
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL-------------- 146
+G+ + ++LM +K +G+ + IM + K G+ +A+ LL
Sbjct: 125 IGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFK 184
Query: 147 --NEAIERGVTQNV--VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ +E VT N V L G P TF V++ALC ++ A LL M
Sbjct: 185 SYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDM 244
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+HG +P+ + LI L Q+
Sbjct: 245 TKHGCVPNSIVYQTLIHALSQK 266
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA +L + GL + Y ++ C+ + + A+ LL+E +G
Sbjct: 439 GLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCK------ 492
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+N++I LC V +I +A L M G + + +++ LI L
Sbjct: 493 ------------PDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHAL 540
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 19/136 (13%)
Query: 102 GRVEEAYEML--MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G +E A+ ++ M + GL PDV T+ +++DG CK R +A + A+ERG NVV
Sbjct: 185 GEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVV 244
Query: 160 TL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T +QLL ++ E+G T+T++ V+ L VG++ A+++L M
Sbjct: 245 TYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQM 304
Query: 203 YEHGKIPSRTSHDMLI 218
+ G +P +++ LI
Sbjct: 305 RDAGCLPDAVTYNTLI 320
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 18/140 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-AIERGVTQNVVTL 161
RV+EAY++ + G P V TY ++DG CK GR A+ L ++ AI G VVT
Sbjct: 45 RVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTY 104
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P +T+N ++ AL G G+ +A LL M
Sbjct: 105 STLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAA 164
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G P + ++IK L ++
Sbjct: 165 NGCPPELITFGLIIKGLCKE 184
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L VGR+E+A +L +++ G PD TY ++DGF K R EA+ LL E +E G +V
Sbjct: 289 LKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSV 348
Query: 159 VTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
VT L L G P IT+++++ LC G++ +AL
Sbjct: 349 VTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEAL 403
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 73/193 (37%), Gaps = 38/193 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K L+E + + + + G + SV + L L D AV+
Sbjct: 325 KRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAI 384
Query: 97 -------NHLMVGRVEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GRV EA + D + P V Y+A++DG CK G+ +EA E L
Sbjct: 385 TYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLER 444
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
I G IP +TF+ +I LC G+I L L M E G +
Sbjct: 445 MI------------------RAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCV 486
Query: 209 PSRTSHDMLIKKL 221
P ++ L+ +L
Sbjct: 487 PDMVTYATLVDRL 499
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 19/139 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE--AIERGVTQNVV 159
GR +EA+ +L + +G P++ T+ I+ G CK G A +++E IE G++ +V+
Sbjct: 150 GRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVI 209
Query: 160 TLIQLL------QR-----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T +L QR LE G P +T++ +I L + K+ +AL LL M
Sbjct: 210 TFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKM 269
Query: 203 YEHGKIPSRTSHDMLIKKL 221
E G + ++ ++ L
Sbjct: 270 VELGCRANTVTYSTVVDGL 288
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ +++EA ++L + G + + TY+ ++DG KVGR +A+ +L + + G + VT
Sbjct: 256 MAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVT 315
Query: 161 LIQLL------QR-----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ QR LE G P +T+ + LC G+ +A+ +L M
Sbjct: 316 YNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMA 375
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P+ ++ ++ L
Sbjct: 376 ARGCAPNAITYSSIVDGL 393
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A + + + + PDV TY A++DG K R EA +L EA +G VVT
Sbjct: 10 KVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYN 69
Query: 163 QLLQ------RLE------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ R+E G P +T++ +I LC ++ K LL M
Sbjct: 70 TMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAG 129
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ +++ L+ L Q
Sbjct: 130 RGCAPNAVTYNTLVNALLGQ 149
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMG 171
++DG CK + ++A+ L + +++ + +VVT L+ L G
Sbjct: 1 MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIKKL 221
P +T+N +I LC G+I AL L M H G P+ ++ LI L
Sbjct: 61 CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGL 111
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 31/179 (17%)
Query: 1 LDISAANSPTPFSVL---LVDSPSRSPSAAESLDLKEN--------PRSLQAQRFVDKI- 48
LD AA P ++ +VD ++ E+L E P + +D +
Sbjct: 371 LDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLC 430
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
KA + E + + + G V F+ L+ L DT ++ F G
Sbjct: 431 KAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMV 490
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
RV+EA+++ +++DGL PD T ++ G +V R +A + +E
Sbjct: 491 TYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549
>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1023
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 85 LNEQDTAVKFFSNHL-MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
L E + N+L VGR++EA +++++ + G+ PD+ Y +++DG+ K G A+
Sbjct: 562 LEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAAL 621
Query: 144 ELLNEAIERGVTQNVV---TLIQLLQRL-------------EMGHIPRTITFNNVIQALC 187
++ E E+ + +VV LI+ L RL E+G P IT+N +I C
Sbjct: 622 SIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCITYNTIINTYC 681
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
GK AL +L M +G +P+ ++++LI L
Sbjct: 682 IKGKTEDALDILNEMKSYGIMPNAVTYNILIGGL 715
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 20/119 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ +EA E+ + L P+ TY+A++DG+CK+G+ MEL
Sbjct: 439 VGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGK----MELAE------------- 481
Query: 161 LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+LQ++E H+ P ITF+++I G + KA+ +L M + +P+ + +LI
Sbjct: 482 --LVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILI 538
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 36/156 (23%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-------- 153
G + +A E++ N +K D+ TY ++ FCK G A L NE +
Sbjct: 246 GLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKN 305
Query: 154 ---VTQNVV-----------TLI-------------QLLQRLEM-GHIPRTITFNNVIQA 185
VTQN + TLI L +++ M G +P +T ++++
Sbjct: 306 NDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYG 365
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
C GK+ +A +L MYE G P+ S+ +I L
Sbjct: 366 FCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSL 401
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 83/198 (41%), Gaps = 35/198 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD------------------TAVKFFSNH 98
+ I +K+ + V +N L+ L+ L + D T + +
Sbjct: 621 LSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCITYNTIINTY 680
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+ G+ E+A ++L +K+ G+ P+ TY ++ G CK G +A L+E +
Sbjct: 681 CIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTP 740
Query: 159 VT----------------LIQLLQRLEMGHIPRTIT-FNNVIQALCGVGKIHKALLLLFL 201
+T ++Q+ ++L + ++T +N +I C +G KA ++L
Sbjct: 741 ITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDE 800
Query: 202 MYEHGKIPSRTSHDMLIK 219
M + G +++ LI+
Sbjct: 801 MVKRGISADLVTYNALIR 818
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
F H G++ EA + + GL P+ +Y I++ K GR EA L ++ + RG+
Sbjct: 366 FCRH---GKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGI 422
Query: 155 TQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALL 197
+ ++VT ++ L++ P +T++ ++ C +GK+ A L
Sbjct: 423 SFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAEL 482
Query: 198 LL 199
+L
Sbjct: 483 VL 484
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G +A +L + G+ D+ TY A++ G+C +A++ ++ G+ N+ T
Sbjct: 788 LGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITT 847
Query: 161 LIQLLQRL---------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
LL L E G +P T++ ++ VG K ++L
Sbjct: 848 YNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILH 907
Query: 200 FLMYEHGKIPSRTSHDMLI 218
M G +P+ ++++LI
Sbjct: 908 IEMITKGFVPTLKTYNVLI 926
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ +G V+ A ++ N+ + G+ DV ++DG+C+ G ++A EL+ + V
Sbjct: 206 GYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKI 265
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
++V T+N +++A C G + +A
Sbjct: 266 DIV------------------TYNTLLKAFCKTGDLTRA 286
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
RV+EA+E+L + G +P+ Y A++DGFCK+G+ +A E+ + ERG + N+ T
Sbjct: 631 RVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYS 690
Query: 161 --------------LIQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++++L + LE P + + ++ LC +GK +A L+ M E
Sbjct: 691 SFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEK 750
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ +I
Sbjct: 751 GCNPNVVTYTAMI 763
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 17/110 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE+A+ + +K +G+ P VYTYT ++D FCK G +A + +E + +G T NVVT
Sbjct: 475 KVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYT 534
Query: 163 QLL-------------QRLEM----GHIPRTITFNNVIQALCGVGKIHKA 195
L+ + EM G P +T+ +I C G+I KA
Sbjct: 535 ALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKA 584
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 19/132 (14%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------- 99
K L++ ++F + + G + ++ ++ + L N D +K S L
Sbjct: 662 CKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNV 721
Query: 100 -----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+G+ +EAY++++ ++ G P+V TYTA++DGF K G+ + +EL +
Sbjct: 722 VIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRD 781
Query: 149 AIERGVTQNVVT 160
+G N +T
Sbjct: 782 MCSKGCAPNFIT 793
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 35/195 (17%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV----- 104
AS +++ +F +K++G SV + L+ + A K+F L G
Sbjct: 473 ASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVT 532
Query: 105 -----------------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+E +EM++ +G KP+V TYTA++DG CK G+ +A ++
Sbjct: 533 YTALIHAYLKAKQMPVADELFEMMLL---EGCKPNVVTYTALIDGHCKAGQIEKACQIY- 588
Query: 148 EAIERGVTQNVVTLIQLLQRLEMGH----IPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
A RG ++ + + ++ H P IT+ ++ LC ++ +A LL M
Sbjct: 589 -ARMRGDIESS----DMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTML 643
Query: 204 EHGKIPSRTSHDMLI 218
HG P++ +D +I
Sbjct: 644 AHGCEPNQIVYDAVI 658
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++++A E+ + G P++YTY++ +D K R + +++L++ +E T NVV
Sbjct: 664 IGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVI 723
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ L E G P +T+ +I GKI + L L M
Sbjct: 724 YTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMC 783
Query: 204 EHGKIPSRTSHDMLI 218
G P+ ++ +LI
Sbjct: 784 SKGCAPNFITYRVLI 798
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 22/144 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G+ EA++++ ++ PD Y ++ G C+ EAM++L+ NVVT
Sbjct: 260 GKCREAFDLIDEAED--FVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTY 317
Query: 161 ---LIQLLQRLEMGHIPRTIT-------------FNNVIQALCGVGKIHKALLLLFLMYE 204
L L++ ++G R ++ FN++I A C A L M +
Sbjct: 318 RILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIK 377
Query: 205 HGKIPSRTSHDMLIKKL---DQQP 225
G P +++ I + ++QP
Sbjct: 378 CGCQPGYLVYNIFIGSVCSNEEQP 401
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------------- 148
G++E+ E+ ++ + G P+ TY +++ C G +EA +LL+E
Sbjct: 770 GKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSH 829
Query: 149 -AIERGVTQNVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
I G +Q +T I LL L E +P + +I G++ AL LL
Sbjct: 830 RKIIEGFSQEFITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLL 882
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 36/156 (23%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122
+K G S + +N L+ + ++ DTA +V R +Y +M D
Sbjct: 202 LKDFGYKPSQTTYNALIQVFLRADKLDTAY-------LVKREMLSYAFVM---------D 245
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182
YT + CK G+ EA +L++EA + +P T+ +N +
Sbjct: 246 RYTLSCFAYSLCKGGKCREAFDLIDEAED--------------------FVPDTVFYNRM 285
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ LC +A+ +L M IP+ ++ +L+
Sbjct: 286 VSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILL 321
>gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 86/233 (36%), Gaps = 82/233 (35%)
Query: 53 LKERIDIFNSIKKDGTNWS-------------------------------------VSDF 75
L ID+FN +K DG NW+ +S +
Sbjct: 420 LDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSGGRMEDGFKILELMEESRGGAGGRISPY 479
Query: 76 NDLLMALVMLNEQDTAVKF--------------------FSNHLMVGRVEEAYEMLMNVK 115
N ++ L N+ + A++F F N +G + Y+ ++
Sbjct: 480 NSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDRSLRILGFCNEGSIGDAKRVYDQMIK-- 537
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
+G P V Y ++ GFC+ G EA EL+NE ++ G+ P
Sbjct: 538 -EGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVDH------------------GYFPT 578
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH----DMLIKKLDQQ 224
TFN +I A CG GK+ AL L+ M G +P S+ D L K D Q
Sbjct: 579 APTFNALISAFCGQGKVGSALKLMEDMVGRGCLPDMGSYSPMVDALCNKGDFQ 631
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 34/204 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
+A +++ I + + I K G N S+ FN +L LV + D A +F+ +M+
Sbjct: 175 RARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVK-EDIDLAREFYRKKMMMNGVSGDD 233
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
R+ +A+++L +K+ G P+ Y ++ CK G+ A L+NE
Sbjct: 234 YTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNE 293
Query: 149 AIE-RGVTQNVV--------TLIQLLQRLE----MGHIPRTITFNNVIQALCGVGKIHKA 195
+E VT NV+ L+Q L LE MG +P +T V+ LC G++ +
Sbjct: 294 MVEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVPDVVTATKVVGILCKAGRVTEG 353
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIK 219
+ +L + G + +++ LIK
Sbjct: 354 VEVLERVESMGGVVDVVAYNTLIK 377
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 35/166 (21%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + E +++ ++ G V +N L+ ML G+ + +
Sbjct: 346 KAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCML----------------GKAKVGH 389
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+L +++ G P+V TY + G+C G + A++L N+ G+ N
Sbjct: 390 RVLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNF---------- 439
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE-HGKIPSRTS 213
+T++ +I+ LC G++ +L LM E G R S
Sbjct: 440 --------MTYDTLIRGLCSGGRMEDGFKILELMEESRGGAGGRIS 477
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 35/195 (17%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E ++ K P + VD + K + E D+ + + K G +V +N L+ + +
Sbjct: 268 EMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRS 327
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
E D AVK F MV + G PDV +Y+ +++G+CK+ R +AM L
Sbjct: 328 EMDEAVKVFDT--MVCK--------------GFAPDVVSYSTLINGYCKIQRIEKAMYLF 371
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
E + + IP T+T++ ++ LC VG++ A+ L M G
Sbjct: 372 EEMCRKEL------------------IPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG 413
Query: 207 KIPSRTSHDMLIKKL 221
+IP S+ +L+ L
Sbjct: 414 QIPDFVSYCILLDYL 428
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG A +L +++ +PDV YT+I+D CK + +A L +E I +G++ ++ T
Sbjct: 186 VGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFT 245
Query: 161 LIQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E H+ P + F+ V+ ALC GK+ +A ++ +M
Sbjct: 246 YNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMI 305
Query: 204 EHGKIPSRTSHDMLI 218
+ G P+ +++ L+
Sbjct: 306 KRGVEPNVVTYNALM 320
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ E + + +G +P+V TY +++G CKVG ++ A+ LL ++E+G Q
Sbjct: 152 GKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLL-RSMEQGNCQ----- 205
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P + + ++I +LC ++ +A L M G PS +++ LI L
Sbjct: 206 ------------PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHAL 253
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
S++DF LL+++ T +K +S L + +++ G+ P++YT ++
Sbjct: 67 SIADFTKLLISI-------TKMKHYSTVLSLSHQMDSF---------GIPPNIYTLNILI 110
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190
+ FC + R A +L + L++GH P TFN +I+ LC G
Sbjct: 111 NSFCHLQRLGFAFSVLAKI------------------LKLGHQPNIATFNTLIRGLCVEG 152
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KI + L L M G P+ ++ LI L
Sbjct: 153 KIGEVLHLFDKMIGEGFQPNVVTYGTLINGL 183
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +E A ++ N+ + GL P+V+TYT +++G C+ G EA +L E +G + N T
Sbjct: 467 GELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCT 525
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +L ++ + PD+ YT ++DG C+ G A +L + +G+ NV
Sbjct: 433 RLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNV---- 488
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T+ +I LC G + +A L M G P+ +++++ +
Sbjct: 489 --------------WTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITR 531
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR+++A + + G PD +Y ++D CK R +EA+ LL +AIE N+
Sbjct: 396 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALL-KAIE---GSNMDP 451
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
IQ+ + VI +C G++ A L + G P+ ++ ++I
Sbjct: 452 DIQI--------------YTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMING 497
Query: 221 LDQQ 224
L QQ
Sbjct: 498 LCQQ 501
>gi|147792816|emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera]
Length = 577
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 19/130 (14%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T +K F N VGR+E+A ++ +K G P+V YT I+DG C+ G A+ELL E
Sbjct: 200 TMIKGFCN---VGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGE- 255
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+++ P +T+ ++IQ+ C GK+ +AL +L M G P
Sbjct: 256 ---------------MEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAP 300
Query: 210 SRTSHDMLIK 219
+R + +L+K
Sbjct: 301 NRVTVSILMK 310
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 51/193 (26%)
Query: 26 AAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
A E + +NPR++ ID+ + + +GT SV FN + L +L
Sbjct: 96 ACELFRINQNPRAI-----------------IDVIEAYRVEGTVVSVKTFN---VVLHLL 135
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
E A +EA +L + ++ D Y +++ FC+ G + A L
Sbjct: 136 REAKLA-------------DEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGL 182
Query: 146 LNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ E + LI L P IT+ +I+ C VG++ A L +M H
Sbjct: 183 MKE----------MGLIDLY--------PNMITYVTMIKGFCNVGRLEDACKLFKVMKGH 224
Query: 206 GKIPSRTSHDMLI 218
G P+ + +++
Sbjct: 225 GCSPNVVVYTVIL 237
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 21/150 (14%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
V+ F N R+EEA +L N+K G+ PDV TY+ ++ G+ + R EA E + E I
Sbjct: 331 VRGFCN---ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMI 387
Query: 151 ERGVTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIH 193
R V N VT L+ L + G + P TFN+VI ALC +G +
Sbjct: 388 ARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMD 447
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+A LL M HG P ++ L++ +
Sbjct: 448 EAWKLLVAMAAHGLEPGMVTYTTLLEGFSR 477
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 23/149 (15%)
Query: 93 KFFSNHLMVG-----RVEEAYEMLMNV-KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
KF + L+ G +V+EA ++ + + KPDV TYTA++DGFCK G +AM++L
Sbjct: 148 KFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKML 207
Query: 147 NEAIERGVTQNVVTLIQLL----------QRLEM-------GHIPRTITFNNVIQALCGV 189
R NVVT LL Q L++ G +P +T+ +I LC
Sbjct: 208 GVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAA 267
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
K+ A LL+ M P S++ L+
Sbjct: 268 HKVDAARLLMDEMTATCCPPDTVSYNALL 296
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 102 GRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++ A E+L V DG+ PDV TYT+++DG C+ G+ + A E++ E +GV + T
Sbjct: 91 GEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFT 150
Query: 161 LIQLL----------QRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
L+ + L++ P +T+ +I C G + KA+ +L +M
Sbjct: 151 FSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVM 210
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+P+ ++ L+ L
Sbjct: 211 EGRKCVPNVVTYSSLLHGL 229
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 97 NHLMVGRV-EEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
N L R+ +AYE+L +++ + PD+ TY+ +++GFCK G + A E+L E + R
Sbjct: 49 NGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRD- 107
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
G P +T+ +V+ LC GK+ +A ++ M G P + +
Sbjct: 108 ----------------GIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTF 151
Query: 215 DMLI 218
LI
Sbjct: 152 SALI 155
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 26/123 (21%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV+ A E+L N+ N ++P V T+ +++ C++G +EA +LL G+ +VT
Sbjct: 409 GRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTY 468
Query: 162 IQLLQ------RLEMGH-------------------IPRTITFNNVIQALCGVGKIHKAL 196
LL+ R+E+ + +P F+ +I+ LC +I KA+
Sbjct: 469 TTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQ-AFSALIRGLCKAREIDKAM 527
Query: 197 LLL 199
++
Sbjct: 528 AVV 530
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+EA ++L + +G +P+ Y A++DGFCKVG+ +EA + + ERG NV T
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R LE P I + +I LC VGK +A L+ +M E
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ +I
Sbjct: 771 GCHPNVVTYTAMI 783
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+ A+ + +K++ + PDV+TYT ++D FCKVG +A + +E + G NVVT
Sbjct: 495 KVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYT 554
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G IP +T+ +I C G+I KA + M +
Sbjct: 555 ALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGN 614
Query: 206 GKIP 209
IP
Sbjct: 615 ADIP 618
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 16 LVDSPSRSPSAAESLDLKE-------NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
LVD ++ E+ DL + P + +D K L E +F + + G
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG 701
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------------MVGRVEEAY 108
+V ++ L+ L D A+K S L VG+ +EAY
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAY 761
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
++ ++ G P+V TYTA++DGF K G+ ++ +EL+ + +G N VT
Sbjct: 762 RLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+++EA + + G P+VYTY++++D K R + A+++L+ +E NV+
Sbjct: 684 VGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVII 743
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ L E G P +T+ +I GK+ K L L+ M
Sbjct: 744 YTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMG 803
Query: 204 EHGKIPSRTSHDMLI 218
G P+ ++ +LI
Sbjct: 804 AKGCAPNFVTYRVLI 818
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 22/173 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K L++ F+ + +DG +V + L+ A + + +A E
Sbjct: 526 CKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSA-------------NEL 572
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+EM+++ +G P+V TYTA++DG CK G+ +A ++ A RG + + + +
Sbjct: 573 FEMMLS---EGCIPNVVTYTALIDGHCKSGQIEKACQIY--ARMRGNAD--IPDVDMYFK 625
Query: 168 LEMGHI--PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ G+I P T+ ++ LC K+ +A LL +M G P+ +D LI
Sbjct: 626 IDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALI 678
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 22/140 (15%)
Query: 98 HLMV--GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
HL+ GR EA L ++ + K D YT ++ G C+ EAM+ L+
Sbjct: 275 HLLCKAGRWREA---LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCI 331
Query: 156 QNVVT----LIQLLQRLEMGHIPRTIT-------------FNNVIQALCGVGKIHKALLL 198
NVVT L L++ ++G R ++ FN++I A C G A L
Sbjct: 332 PNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKL 391
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
L M + G P +++LI
Sbjct: 392 LKKMGDCGCQPGYVVYNILI 411
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR--SNEAMELLNEAIERGVTQNVV 159
G AY++L + + G +P Y ++ G C + S + +EL +A + +VV
Sbjct: 383 GDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVV 442
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +N+ + LCG GK KA ++ M G IP +++ +I
Sbjct: 443 L--------------NKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVI 487
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L ID+ + K G + +N LL + D A+++ N
Sbjct: 365 LGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNT 424
Query: 99 LMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L+ G+ + A E+L + + G P + TY ++DG KVG++ A ELL E +G
Sbjct: 425 LLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKG 484
Query: 154 VTQNVVTLIQLLQRLEM-GHI----------------PRTITFNNVIQALCGVGKIHKAL 196
+ +++T LL+ L G + P +T+N ++ LC + +A+
Sbjct: 485 LKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAI 544
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M E G P++ ++ +LI+ +
Sbjct: 545 DFLAYMVEKGCKPTKATYTILIEGI 569
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 17/138 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A ++L ++ G KPDV TY +++G CK GR +EA++ LN G NV+T
Sbjct: 260 VGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNI 319
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L+ L G P +TFN +I LC + +A+ +L M +HG
Sbjct: 320 ILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG 379
Query: 207 KIPSRTSHDMLIKKLDQQ 224
+P+ S++ L+ Q+
Sbjct: 380 CMPNSLSYNPLLHGFCQE 397
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR++EA + L N+ G +P+V T+ I+ C GR +A LL + + +G + +VVT
Sbjct: 293 GRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTF 352
Query: 161 --LIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R + G +P ++++N ++ C K+ +A+ L +M
Sbjct: 353 NILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVS 412
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 413 RGCYPDIVTYNTLLTAL 429
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA E+L PDV TYT +++ C +AM+LL+E ++G +VVT
Sbjct: 223 GKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTY 282
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+ L + + G P IT N +++++C G+ A LL M
Sbjct: 283 NVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLR 342
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G PS + ++LI L ++
Sbjct: 343 KGCSPSVVTFNILINFLCRK 362
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EE + L + G PDV T+++ GFC+ G++ +A ++ G +V+T
Sbjct: 121 GELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITY 180
Query: 162 ----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+Q+L+R+ + P +T+N ++++LC GK+ +A+ +L +
Sbjct: 181 NVLIGGYCKSGEIDKALQVLERMSVA--PDVVTYNTILRSLCDSGKLKEAMEVLDRQMQR 238
Query: 206 GKIPSRTSHDMLIK 219
P ++ +LI+
Sbjct: 239 ECYPDVITYTILIE 252
>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 418
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A EL +E I+ G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYMPS 415
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+EA ++L + +G +P+ Y A++DGFCKVG+ +EA + + ERG NV T
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R LE P I + +I LC VGK +A L+ +M E
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ +I
Sbjct: 771 GCHPNVVTYTAMI 783
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+ A+ + +K++ + PDV+TYT ++D FCKVG +A + +E + G NVVT
Sbjct: 495 KVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYT 554
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G IP +T+ +I C G+I KA + M +
Sbjct: 555 ALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGN 614
Query: 206 GKIP 209
IP
Sbjct: 615 ADIP 618
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 16 LVDSPSRSPSAAESLDLKE-------NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
LVD ++ E+ DL + P + +D K L E +F + + G
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG 701
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------------MVGRVEEAY 108
+V ++ L+ L D A+K S L VG+ +EAY
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAY 761
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
++ ++ G P+V TYTA++DGF K G+ ++ +EL+ + +G N VT
Sbjct: 762 RLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+++EA + + G P+VYTY++++D K R + A+++L+ +E NV+
Sbjct: 684 VGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVII 743
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ L E G P +T+ +I GK+ K L L+ M
Sbjct: 744 YTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMG 803
Query: 204 EHGKIPSRTSHDMLI 218
G P+ ++ +LI
Sbjct: 804 AKGCAPNFVTYRVLI 818
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 22/173 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K L++ F+ + +DG +V + L+ A + + +A E
Sbjct: 526 CKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSA-------------NEL 572
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+EM+++ +G P+V TYTA++DG CK G+ +A ++ A RG + + + +
Sbjct: 573 FEMMLS---EGCIPNVVTYTALIDGHCKSGQIEKACQIY--ARMRGNAD--IPDVDMYFK 625
Query: 168 LEMGHI--PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ G+I P T+ ++ LC K+ +A LL +M G P+ +D LI
Sbjct: 626 IDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALI 678
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 22/140 (15%)
Query: 98 HLMV--GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
HL+ GR EA + ++ + K D YT ++ G C+ EAM+ L+
Sbjct: 275 HLLCKAGRWREALAL---IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCI 331
Query: 156 QNVVT----LIQLLQRLEMGHIPRTIT-------------FNNVIQALCGVGKIHKALLL 198
NVVT L L++ ++G R ++ FN++I A C G A L
Sbjct: 332 PNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKL 391
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
L M + G P +++LI
Sbjct: 392 LKKMGDCGCQPGYVVYNILI 411
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR--SNEAMELLNEAIERGVTQNVV 159
G AY++L + + G +P Y ++ G C + S + +EL +A + +VV
Sbjct: 383 GDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVV 442
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +N+ + LCG GK KA ++ M G IP +++ +I
Sbjct: 443 L--------------NKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVI 487
>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%), Gaps = 65/242 (26%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
K + + + +F+ +K G + S N LL+ L + + +A+K F
Sbjct: 36 CKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTS 95
Query: 96 SNH-------LMVGR------------VE---EAYEMLMNVKNDG--------------L 119
++H M GR VE E+Y +L++ +D
Sbjct: 96 ASHNILLRGFFMAGRAIEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTC 155
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQRL-------- 168
PD+ TY +MDG+CK+G++ EA L+ E ++ G NV T +I +L
Sbjct: 156 SPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWE 215
Query: 169 ------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
E +P +TFN +I C G + A+ L M + G + +++ LI L
Sbjct: 216 VFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLC 275
Query: 223 QQ 224
++
Sbjct: 276 KK 277
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 34/194 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM-LNEQDTAVKFFS---------- 96
KA L++ I +F ++K G ++ +N L+ +L TAV F+
Sbjct: 240 CKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPT 299
Query: 97 ----NHLMVG---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ G R + +L ++ +G KPDV TY ++ G C R +A L N
Sbjct: 300 IVTYNSLIQGFSERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFN-- 357
Query: 150 IERGVTQNVVTLIQLLQRL-------EMGHI------PRTITFNNVIQALCGVGKIHKAL 196
NV T L++ L E +I P TFN +I A C G +H A
Sbjct: 358 -GMACAPNVTTFNFLIRGLCAQKKVEEARNILDRMTAPDMTTFNTIILAFCKAGAMHDAR 416
Query: 197 LLLFLMYEHGKIPS 210
++ M +HG P+
Sbjct: 417 EVMKDMLKHGFYPN 430
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A + V P+ +TY ++ GFCK G+ ++A+ + ++ G+
Sbjct: 7 DQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGL---------- 56
Query: 165 LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+P T N ++ LC +G++ AL L M +P+ SH++L++
Sbjct: 57 --------LPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLR 103
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 20/120 (16%)
Query: 66 DGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-----------NHLMVG-----RVEEAYE 109
+G V +N L+ L N + A + F+ N L+ G +VEEA
Sbjct: 327 EGCKPDVITYNCLISGLCSANRVEDAQRLFNGMACAPNVTTFNFLIRGLCAQKKVEEA-- 384
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
N+ + PD+ T+ I+ FCK G ++A E++ + ++ G N T L ++
Sbjct: 385 --RNILDRMTAPDMTTFNTIILAFCKAGAMHDAREVMKDMLKHGFYPNTYTTYALAHGIQ 442
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 42/209 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF----------------- 95
L+E F I + G + ++ +N L+ L M + A + F
Sbjct: 120 LREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGT 179
Query: 96 --SNHLMVGRVEEAYEMLMNVKND------GLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
G + A ++ + ND KP+V TY I+DG CKVGR +EA +L
Sbjct: 180 LIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFE 239
Query: 148 EAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVG 190
E +G+ ++++ L+ + L+ G P +TFN +I LC G
Sbjct: 240 EMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEG 299
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
K+ +A LL +M E G +P +++ LI+
Sbjct: 300 KVIEAKKLLGVMIESGIVPDLVTYNSLIE 328
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR +EA ++ +K G+ P + +Y +++ GFC G+ E+ LL+E +++G+ ++VT
Sbjct: 228 VGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVT 287
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E G +P +T+N++I+ C VG ++ A L M
Sbjct: 288 FNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMP 347
Query: 204 EHGKIPSRTSHDMLI 218
G P S+++LI
Sbjct: 348 SKGCEPDVISYNVLI 362
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 23/141 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V R+ E + + G P++ TY ++ G C R +EA L + G T +VVT
Sbjct: 117 VNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVT 176
Query: 161 LIQLLQ-----------------------RLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
L++ R E+ P IT+N ++ LC VG+ +A
Sbjct: 177 YGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQ 236
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
L M G IPS S++ LI
Sbjct: 237 LFEEMKTQGMIPSIISYNSLI 257
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 36/201 (17%)
Query: 17 VDSPSRSPSAAESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDF 75
VD + S ++ + EN S F+D + K L E + +F +K + +
Sbjct: 406 VDDAKKLFSVMKAHGIAEN--SYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENL 463
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
N L+ L G++E A+E+ + N+G +P+V TYT ++ GFC+
Sbjct: 464 NCLIDGLCK----------------AGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCR 507
Query: 136 VGRSNEAMELLNEAIERGVTQNVVT----------------LIQLLQRLEMGHI-PRTIT 178
G+ ++A L+ + G T +++T ++QLL R+ + P IT
Sbjct: 508 EGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAIT 567
Query: 179 FNNVIQALCGVGKIHKALLLL 199
+ V+ L K + L LL
Sbjct: 568 CSIVVDMLSKDEKYQECLHLL 588
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV---T 155
+ G+V++A ++ +K G+ + YTY +DG CK EAM+L E
Sbjct: 401 FLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEI 460
Query: 156 QNVVTLI-------------QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
+N+ LI +L ++L GH P +T+ +I C G++ KA +L+
Sbjct: 461 ENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQK 520
Query: 202 MYEHGKIPSRTSHDMLIK 219
M +G P +++ L++
Sbjct: 521 MEANGCTPDIITYNTLMR 538
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 40 QAQRFVDKIKASPLKERIDIFN----SIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
+++R +D++ L+ + FN ++ K+G +++ ++ + T
Sbjct: 268 ESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLI 327
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
MVG + A E+ +++ + G +PDV +Y +++G+ K + EAM+L NE
Sbjct: 328 EGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEM------ 381
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
L +G P IT++++++ + GK+ A L +M HG + ++
Sbjct: 382 ------------LLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYG 429
Query: 216 MLIKKL 221
+ + L
Sbjct: 430 IFLDGL 435
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 23/130 (17%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
NHL+ G + + + ++ GL D T +++ C V R E +
Sbjct: 73 NHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILR 132
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
RG + N+VT +N +I+ LC +I +A L M + G P
Sbjct: 133 RGYSPNIVT------------------YNTLIKGLCMEHRISEATRLFLRMQKLGCTPDV 174
Query: 212 TSHDMLIKKL 221
++ LIK L
Sbjct: 175 VTYGTLIKGL 184
>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 418
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+SI K G SV FN L+ + ++ +G ++E + + ++ G
Sbjct: 158 VFDSITKWGLRPSVVSFNTLM----------------NGYIKIGDLDEGFRLKSVMQASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYT++ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 202 VQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + + L+ M G P + ++ LI
Sbjct: 262 EIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLI 318
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + ++ GL+P V ++ +M+G+ K+G +E L +
Sbjct: 137 YFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSV 196
Query: 149 AIERGVTQNVVT---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGK 191
GV +V T LI L + L+ G +P +TF +I C G+
Sbjct: 197 MQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGR 256
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 257 VDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKK 289
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G N VT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPNXVT 418
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
G +++ +++ + GLKPD TYT ++DG CK G A E I+ +
Sbjct: 290 GDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAY 349
Query: 155 TQNVVTLIQ----------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T + L Q L + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPSRTS 213
G P+ +
Sbjct: 410 XGYXPNXVT 418
>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 418
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 33/187 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +K +F++I K G + FN L+ + ++ +G ++E +
Sbjct: 148 KEGEIKLAQSVFDAITKWGLRPTAVSFNTLM----------------NGYIRLGDLDEGF 191
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
+ ++ G++PDVYTY+ +++G CK + + A EL NE ++ G+ N VT L+
Sbjct: 192 RLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGH 251
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
Q L P IT+N +I LC G + +A L+ M G P +
Sbjct: 252 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 311
Query: 212 TSHDMLI 218
++ LI
Sbjct: 312 VTYTTLI 318
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + L+ M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYVPS 415
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +L+ E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+EA ++L + +G +P+ Y A++DGFCKVG+ +EA + + ERG NV T
Sbjct: 651 KVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYS 710
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R LE P I + +I LC VGK +A L+ +M E
Sbjct: 711 SLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEK 770
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ +I
Sbjct: 771 GCHPNVVTYTAMI 783
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+ A+ + +K++ + PDV+TYT ++D FCKVG +A + +E + G NVVT
Sbjct: 495 KVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYT 554
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G IP +T+ +I C G+I KA + M +
Sbjct: 555 ALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGN 614
Query: 206 GKIP 209
IP
Sbjct: 615 ADIP 618
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 27/172 (15%)
Query: 16 LVDSPSRSPSAAESLDLKE-------NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
LVD ++ E+ DL + P + +D K L E +F + + G
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG 701
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------------MVGRVEEAY 108
+V ++ L+ L D A+K S L VG+ +EAY
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAY 761
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
++ ++ G P+V TYTA++DGF K G+ ++ +EL+ + +G N VT
Sbjct: 762 RLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+++EA + + G P+VYTY++++D K R + A+++L+ +E NV+
Sbjct: 684 VGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVII 743
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ L E G P +T+ +I GK+ K L L+ M
Sbjct: 744 YTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMG 803
Query: 204 EHGKIPSRTSHDMLI 218
G P+ ++ +LI
Sbjct: 804 AKGCAPNFVTYRVLI 818
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 22/173 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K L++ F+ + +DG +V + L+ A + + +A E
Sbjct: 526 CKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSA-------------NEL 572
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+EM+++ +G P+V TYTA++DG CK G+ +A ++ A RG + + + +
Sbjct: 573 FEMMLS---EGCIPNVVTYTALIDGHCKSGQIEKACQIY--ARMRGNAD--IPDVDMYFK 625
Query: 168 LEMGHI--PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ G+I P T+ ++ LC K+ +A LL +M G P+ +D LI
Sbjct: 626 IDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALI 678
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 22/140 (15%)
Query: 98 HLMV--GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
HL+ GR EA + ++ + K D YT ++ G C+ EAM+ L+
Sbjct: 275 HLLCKAGRWREALAL---IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCI 331
Query: 156 QNVVT----LIQLLQRLEMGHIPRTIT-------------FNNVIQALCGVGKIHKALLL 198
NVVT L L++ ++G R ++ FN++I A C G A L
Sbjct: 332 PNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKL 391
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
L M + G P +++LI
Sbjct: 392 LKKMGDCGCQPGYVVYNILI 411
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR--SNEAMELLNEAIERGVTQNVV 159
G AY++L + + G +P Y ++ G C + S + +EL +A + +VV
Sbjct: 383 GDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVV 442
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +N+ + LCG GK KA ++ M G IP +++ +I
Sbjct: 443 L--------------NKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVI 487
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 34/180 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+ I +KK+G N +V +++ L+ GR+EEA E+ +K+
Sbjct: 335 LKIMEFMKKNGCNPNVFNYSALMNGFCK----------------EGRLEEAKEVFDEMKS 378
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--------------- 161
GLKPD YT +++ FC+ GR +EAMELL + E + VT
Sbjct: 379 LGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEE 438
Query: 162 -IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS-RTSHDMLI 218
+L+RL G ++ V+ +LC G++ KA L+ LM G +P TS+++L+
Sbjct: 439 AXGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLV 498
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
+V+ A +++ +K +G P+V+ Y+A+M+GFCK GR EA E+ +E G+ + V
Sbjct: 330 KVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYT 389
Query: 160 TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
TLI R E T+TFN ++ LC G+ +A +L +
Sbjct: 390 TLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYE 449
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G ++ S+ +++ L ++
Sbjct: 450 GVYLNKASYRIVLNSLCRE 468
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 18/122 (14%)
Query: 102 GRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++EA E+ V D + PD TY A+++GFC + + A++++ + G NV
Sbjct: 293 GRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFN 352
Query: 161 LIQLLQ------RLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ RLE +G P T+ + +I C G++ +A+ LL M
Sbjct: 353 YSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMX 412
Query: 204 EH 205
E+
Sbjct: 413 EN 414
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLK-PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++ A+E++ +K + P++ TY+ +++G C GR EA+EL E + +
Sbjct: 257 GDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKD------- 309
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q+L P +T+N +I C K+ +AL ++ M ++G P+ ++ L+
Sbjct: 310 --QIL--------PDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALM 357
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR EEA ML + +G+ + +Y +++ C+ G +A +L+ + RGV
Sbjct: 434 GRFEEAXGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGV------- 486
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+P T N ++ LC GK+ A++ L + E G P S +L++
Sbjct: 487 -----------LPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVE 533
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 33/186 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K ++E + +S+ +G +VS +N L+ L +QD ++ A
Sbjct: 390 KEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLC--RKQD--------------LQAAK 433
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+L ++N GLK DV TY ++DG CK +S A +LLNE G+ N VT L+
Sbjct: 434 ELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGY 493
Query: 169 EM-GHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
M G + P +T+N +I+ C + K+ A LL M E G P+R
Sbjct: 494 CMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNR 553
Query: 212 TSHDML 217
T++D++
Sbjct: 554 TTYDIV 559
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + F V ++A+E ++ GLKP++ TY ++++G C G+ EA++L ++
Sbjct: 277 NTLIDGFCKDENVAAAKKAFE---EMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDK 333
Query: 149 AIERGVTQNVVT---LIQLLQRLEMGH--------------IPRTITFNNVIQALCGVGK 191
+ G+ N+VT LI + +M +P ITFN +I A C G
Sbjct: 334 MVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGM 393
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ + L M + G +P+ ++++ LI L ++
Sbjct: 394 MEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRK 426
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 39/200 (19%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNE-------------------QDTAVKFFSNH 98
+ F K G S++ N LL ALV N+ +T F +
Sbjct: 151 EAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGL 210
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK---VGRSNEAMELLNEAIERGVT 155
G++ +A + + ++K G+ P+V TY ++DG+CK G+ +A + E + +
Sbjct: 211 CRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKIC 270
Query: 156 QNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLL 198
N VT L+ + G P +T+N++I LC GK+ +A+ L
Sbjct: 271 PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDL 330
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
M G P+ +++ LI
Sbjct: 331 WDKMVGLGLKPNIVTYNALI 350
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 28/205 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL 99
+A R VD+ A+ E D++ K +D L TAV F+ +
Sbjct: 61 EAARLVDR--ATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118
Query: 100 MV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+V G+++ A ++ ++ + PD YTYT I+ G C GR EA+ LL++ + RG
Sbjct: 119 LVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175
Query: 154 VTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
+VVT LL+ + EM G P +T+N +I +C G++ A
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L + +G P S+ ++K L
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGL 260
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 33/194 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV----------------G 102
+ + ++ GT V +N L+ + D A + ++ + G
Sbjct: 100 VLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRG 159
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV EA +L ++ + G +P V TYT +++ CK +AME+L+E +G T N+VT
Sbjct: 160 RVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYN 219
Query: 162 ---------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ L RL G P T+++ V++ LC + L M E
Sbjct: 220 VIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEK 279
Query: 206 GKIPSRTSHDMLIK 219
+P+ + DML++
Sbjct: 280 NCMPNEVTFDMLVR 293
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A++ L N+ + G PD +YT ++ G C+ R +A ELL E + +
Sbjct: 334 GRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP------ 387
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN I LC G I +A +L+ M EHG + +++ L+
Sbjct: 388 ------------PNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435
Query: 222 DQQ 224
Q
Sbjct: 436 CVQ 438
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 20/150 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF G ++EA E++ + G P++ TY ++DG S EA+ELL+ +
Sbjct: 499 VSFFCQK---GLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVS 555
Query: 152 RGVTQNVVT---LIQLLQR-------LEMGHI-------PRTITFNNVIQALCGVGKIHK 194
GV+ ++VT +I +L R ++M HI P+ + +N ++ ALC
Sbjct: 556 NGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDG 615
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ M +G +P+ ++ LI+ L +
Sbjct: 616 AIDFFAYMVSNGCMPNELTYITLIEGLANE 645
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A E L + + G +PD +YT ++ G C R + EL E +E+ N VT
Sbjct: 229 GRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTF 288
Query: 162 ----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
IQ+L+++ G T N VI +C G++ A L M
Sbjct: 289 DMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGS 348
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P S+ ++K L
Sbjct: 349 YGCSPDTISYTTVLKGL 365
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A E+L ++ G P++ TY I++G C+ GR ++A E LN G + V+ +L
Sbjct: 198 QAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVL 257
Query: 166 QRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L E +P +TF+ +++ C G + +A+ +L M HG
Sbjct: 258 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCA 317
Query: 209 PSRTSHDMLIKKLDQQ 224
+ T +++I + +Q
Sbjct: 318 ANTTLCNIVINTICKQ 333
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A ++ + G + ++ TY A+++GFC GR + A+EL + T TL
Sbjct: 404 GLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTL 463
Query: 162 IQ--------------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ L + L+ P +TFN ++ C G + +A+ L+ M EHG
Sbjct: 464 LTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGC 523
Query: 208 IPSRTSHDMLI 218
P+ +++ L+
Sbjct: 524 TPNLITYNTLL 534
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 90/199 (45%), Gaps = 33/199 (16%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-----------HLMVG----- 102
+ + + G ++ +N L+ + D+A++ F + L+ G
Sbjct: 412 LIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAE 471
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++ A E+L + P+V T+ ++ FC+ G +EA+EL+ + +E G T N++T
Sbjct: 472 RLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYN 531
Query: 163 QLL----------QRLEMGH-------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL + LE+ H P +T++++I L ++ +A+ + ++ +
Sbjct: 532 TLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 591
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P ++ ++ L ++
Sbjct: 592 GMRPKAVIYNKILLALCKR 610
>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 766
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 42/243 (17%)
Query: 8 SPTPFSV-LLVDSPSRSPSAAESLDLKE-------NPRSLQAQRFVDKIKASPLKE-RID 58
SPT +S +L+D + ++LDL E P + D + S L E +
Sbjct: 355 SPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLS 414
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+++ +G V +N L+ V+ + +A K +EM MN G
Sbjct: 415 MFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKL------------VHEMRMN----G 458
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------I 162
P+ +T+ ++ GFCK R ++A+E+ ++ GV N+ T +
Sbjct: 459 SVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEAL 518
Query: 163 QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+L+ ++ +G +P + T+N VI+ LC K KA +L +M ++ P ++ LI
Sbjct: 519 KLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGY 578
Query: 222 DQQ 224
+Q
Sbjct: 579 AKQ 581
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA+E+L ++++ G+ P Y+Y+ ++DG CK G+ +A++L+ E ++ V ++VT
Sbjct: 337 GELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTY 396
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L L G+ I++N +I + A L+ M
Sbjct: 397 SSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRM 456
Query: 205 HGKIPSRTSHDMLI 218
+G +P+ + + LI
Sbjct: 457 NGSVPNSFTFNRLI 470
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 22/133 (16%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCK--VGRSNE---AMELLNEAIERGVTQNVVTL------- 161
+K+ G P+V+TYT +M+ +CK G++ + A E+L E G + VVT
Sbjct: 239 LKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGL 298
Query: 162 ---------IQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
++L++ L + + P + +N VI C G++H+A LL M HG P+
Sbjct: 299 CRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTA 358
Query: 212 TSHDMLIKKLDQQ 224
S+ +LI L ++
Sbjct: 359 YSYSILIDGLCKK 371
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+ FSN +++EAY + + GL PD +T I+ GFCKVG A L E +
Sbjct: 610 INMFSNR---SKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQ 666
Query: 152 RGVTQNVVTLIQL------LQRLEMGHI-----------PRTITFNNVIQALCGVGKIHK 194
G + NVVT L ++R++ P +T+ +I +G +
Sbjct: 667 WGKSPNVVTYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDR 726
Query: 195 ALLLLFLMYEHGKIPSRTSHDML 217
+ M E+G P+ T++ L
Sbjct: 727 VREMFNEMKENGVFPNYTAYATL 749
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ E+A+E+L + + + P Y ++DG+ K +A+ L + ++ G+ ++VT
Sbjct: 548 KTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYT 607
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + ++ G +P I F +I C VG + A L M +
Sbjct: 608 MLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQW 667
Query: 206 GKIPSRTSHDMLI 218
GK P+ ++ LI
Sbjct: 668 GKSPNVVTYTCLI 680
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 21/158 (13%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123
G N + ++L + M E T V + G VE A ++ +++ +
Sbjct: 264 GKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNS 323
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI 183
Y Y A++ FC+ G +EA ELL + G++ P +++ +I
Sbjct: 324 YCYNAVIHEFCRNGELHEAFELLEDMRSHGIS------------------PTAYSYSILI 365
Query: 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LC G++ KAL L+ M + PS ++ L L
Sbjct: 366 DGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGL 403
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 28/205 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL 99
+A R VD+ A+ E D++ K +D L TAV F+ +
Sbjct: 61 EAARLVDR--ATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118
Query: 100 MV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+V G+++ A ++ ++ + PD YTYT I+ G C GR EA+ LL++ + RG
Sbjct: 119 LVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175
Query: 154 VTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
+VVT LL+ + EM G P +T+N +I +C G++ A
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L + +G P S+ ++K L
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGL 260
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 33/194 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV----------------G 102
+ + ++ GT V +N L+ + D A + ++ + G
Sbjct: 100 VLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRG 159
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV EA +L ++ + G +P V TYT +++ CK +AME+L+E +G T N+VT
Sbjct: 160 RVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYN 219
Query: 162 ---------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ L RL G P T+++ V++ LC + L M E
Sbjct: 220 VIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEK 279
Query: 206 GKIPSRTSHDMLIK 219
+P+ + DML++
Sbjct: 280 NCMPNEVTFDMLVR 293
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A++ L N+ + G PD +YT ++ G C+ R +A ELL E + +
Sbjct: 334 GRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCP------ 387
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN I LC G I +A +L+ M EHG + +++ L+
Sbjct: 388 ------------PNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435
Query: 222 DQQ 224
Q
Sbjct: 436 CVQ 438
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 20/150 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF G ++EA E++ + G P++ TY ++DG K S EA+ELL+ +
Sbjct: 499 VSFFCQK---GLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVS 555
Query: 152 RGVTQNVVT---LIQLLQR-------LEMGHI-------PRTITFNNVIQALCGVGKIHK 194
GV+ ++VT +I +L R ++M HI P+ + +N ++ ALC
Sbjct: 556 NGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDG 615
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ M +G +P+ ++ LI+ L +
Sbjct: 616 AIDFFAYMVSNGCMPNELTYITLIEGLANE 645
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A E L + + G +PD +YT ++ G C R + EL E +E+ N VT
Sbjct: 229 GRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTF 288
Query: 162 ----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
IQ+L+++ G T N VI +C G++ A L M
Sbjct: 289 DMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGS 348
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P S+ ++K L
Sbjct: 349 YGCSPDTISYTTVLKGL 365
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A E+L ++ G P++ TY I++G C+ GR ++A E LN G + V+ +L
Sbjct: 198 QAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVL 257
Query: 166 QRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L E +P +TF+ +++ C G + +A+ +L M HG
Sbjct: 258 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCA 317
Query: 209 PSRTSHDMLIKKLDQQ 224
+ T +++I + +Q
Sbjct: 318 ANTTLCNIVINTICKQ 333
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A ++ + G + ++ TY A+++GFC GR + A+EL + T TL
Sbjct: 404 GLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTL 463
Query: 162 IQ--------------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ L + L+ P +TFN ++ C G + +A+ L+ M EHG
Sbjct: 464 LTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGC 523
Query: 208 IPSRTSHDMLIKKLDQ 223
P+ +++ L+ + +
Sbjct: 524 TPNLITYNTLLDGITK 539
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 90/199 (45%), Gaps = 33/199 (16%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-----------HLMVG----- 102
+ + + G ++ +N L+ + D+A++ F + L+ G
Sbjct: 412 LIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAE 471
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++ A E+L + P+V T+ ++ FC+ G +EA+EL+ + +E G T N++T
Sbjct: 472 RLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYN 531
Query: 163 QLL----------QRLEMGH-------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL + LE+ H P +T++++I L ++ +A+ + ++ +
Sbjct: 532 TLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 591
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P ++ ++ L ++
Sbjct: 592 GMRPKAVIYNKILLALCKR 610
>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rubella]
Length = 394
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 146 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMHASG 189
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 190 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAL 249
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 250 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALI 306
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD TYTA++DG CK G + A E I+ + + V
Sbjct: 278 GDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 337
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + L +G P T+ +I C G + K LL
Sbjct: 338 TALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 392
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GR +A +ML + + GLKPD TYT I++ FCK G + +LL E
Sbjct: 348 GRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 394
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 23/143 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A ++L ++N G KPDV TY +++G CK GR +EA++ LN G NV+T
Sbjct: 98 VGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNI 157
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L+ L G P +TFN +I LC G + +A+ +L M HG
Sbjct: 158 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 217
Query: 207 KIPSRTSHDMLI------KKLDQ 223
P+ S++ L+ KK+D+
Sbjct: 218 CTPNSLSYNPLLHGFCKEKKMDR 240
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA + L N+ + G +P+V T+ I+ C GR +A +LL++ + +G + +VVT
Sbjct: 131 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 190
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I +L+++ M G P ++++N ++ C K+ +A+ L +M
Sbjct: 191 NILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVS 250
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 251 RGCYPDIVTYNTLLTAL 267
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L IDI + G + +N LL + D A+++ N
Sbjct: 203 LGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT 262
Query: 99 LMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L+ G+V+ A E+L + + G P + TY ++DG KVG++ A++LL+E +G
Sbjct: 263 LLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKG 322
Query: 154 VTQNVVTL----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKAL 196
+ +++T I+ LE +G P IT+N+++ LC + +A+
Sbjct: 323 LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAI 382
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M P+ ++ +LI+ +
Sbjct: 383 DFLAYMISKRCKPTEATYTILIEGI 407
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K + I + + +++ G + ++ L+ L + D A+KFF
Sbjct: 304 KVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAI 363
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N +M+G + + A + L + + KP TYT +++G G + EA++LLNE
Sbjct: 364 TYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 423
Query: 150 IERGVTQ 156
RG+ +
Sbjct: 424 CSRGLVK 430
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRL-EMGHIPRT 176
CK +AM+LL+E +G +VVT I+ L + G P
Sbjct: 93 CKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNV 152
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
IT N +++++C G+ A LL M G PS + ++LI L +Q
Sbjct: 153 ITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 200
>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
Length = 772
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G VE+A E+L + +G PD+ +Y+ ++DG K G++ EA+ELLN + +G++ N +
Sbjct: 475 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534
Query: 161 ---------------LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+IQ+ ++ I + +N VI +LC + +A+ M
Sbjct: 535 SSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVS 594
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G +P+ +++ MLIK L +
Sbjct: 595 NGCMPNESTYTMLIKGLASE 614
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF + +V RV E E +++ G PDV TYT +++GFCK G +EA+ LL
Sbjct: 363 VDFFCQNGLVDRVIELLEQMLS---HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS 419
Query: 152 RGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHK 194
G N V+ +L Q ++ G P +TFN +I LC G + +
Sbjct: 420 CGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQ 479
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL M +G P S+ +I L +
Sbjct: 480 AIELLKQMLVNGCSPDLISYSTVIDGLGK 508
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA +L ++ + G KP+ +YT ++ G C GR +A EL+++ I++G N VT
Sbjct: 405 GLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTF 464
Query: 162 ----------------IQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+LL Q L G P I+++ VI L GK +AL LL +M
Sbjct: 465 NTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVN 524
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ + + L ++
Sbjct: 525 KGISPNTIIYSSIACALSRE 544
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G E +E+L + G PD+ Y I+DG CK G A E+LN G+ NVV
Sbjct: 265 GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCY 324
Query: 161 --------------------------------------------------LIQLL-QRLE 169
+I+LL Q L
Sbjct: 325 NTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLS 384
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P IT+ VI C G I +A++LL M G P+ S+ +++K L
Sbjct: 385 HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA +L + G + D+ +Y A++ G C R + EL++E + N+VT
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G P + +I +C G + A +L M
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPS 314
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P+ ++ ++K L
Sbjct: 315 YGLKPNVVCYNTVLKGL 331
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I +F++IK +N ++ +L E D A+ FF AY + +
Sbjct: 551 IQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF-----------AY-----MVS 594
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+G P+ TYT ++ G G + EA ELL+E RG
Sbjct: 595 NGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A + ++ G+ PD++TY +++ GFC GR ++A +LL E +ER ++ +VVT
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G IP TIT++++I C ++ A + +LM
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 205 HGKIPSRTSHDMLI 218
G P+ + + LI
Sbjct: 389 KGCSPNLITFNTLI 402
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 29/183 (15%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLM 112
I +S+ KDG + SD +L + E+ F+ + M+ GR +A ++L
Sbjct: 261 IIDSLCKDGRH---SDAQNLFTEM---QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------Q 166
+ + PDV TY A+++ F K G+ EA EL +E + RG+ N +T ++
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQN 374
Query: 167 RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
RL+ G P ITFN +I CG +I + LL M E G + T+++
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434
Query: 216 MLI 218
LI
Sbjct: 435 TLI 437
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M ++ + P+V T+T +++G+CK GR ++ +EL E RG+ N +T I
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P TIT N++ L ++ +A+ +L
Sbjct: 621 TLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAML 674
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 80/208 (38%), Gaps = 41/208 (19%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-------- 101
S L + F I K G + V FN LL L + + A+ F H M
Sbjct: 127 CSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLF--HQMFETTCRPNV 184
Query: 102 -------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GR+ EA +L + DGL+P TY I+DG CK G + A+ LL +
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRK 244
Query: 149 AIERG-VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVG 190
E + NVV ++ L E G P T+N++I C G
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A LL M E P +++ LI
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALI 332
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 93/219 (42%), Gaps = 35/219 (15%)
Query: 23 SPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82
+ ++ ES + SL+ Q +IK L++ ID+F+ + + SV DF L+ +
Sbjct: 32 AKASGESCEAGFGGESLKLQSGFHEIKG--LEDAIDLFSDMLRSRPLPSVVDFCKLMGVV 89
Query: 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
V + D + + ++ ++ D+Y++T ++ FC + A
Sbjct: 90 VRMERPDLVISLYQK----------------MERKQIRCDIYSFTILIKCFCSCSKLPFA 133
Query: 143 MELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQA 185
+ + + G+ +VVT LL Q E P +TF ++
Sbjct: 134 LSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNG 193
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LC G+I +A+ LL M E G P++ ++ ++ + ++
Sbjct: 194 LCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 18/163 (11%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ N+ K+G + + D ++ ++ T R++ A M + G
Sbjct: 331 LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKG 390
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
P++ T+ ++DG+C R ++ MELL+E E G+ + T T
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL------------------VADTTT 432
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +I VG ++ AL LL M G P + D L+ L
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EA E+ + + G+ PD TY++++DG CK R +EA ++ + + + NVVT
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 162 IQLLQR--------------LEMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EMG + IT+ +I VG I+ AL + M
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644
Query: 205 HGKIP 209
G P
Sbjct: 645 SGVYP 649
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 28/150 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++ E+L + GL D TY ++ GF VG N A++LL E I G+ ++VT
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469
Query: 163 QLLQ----------RLEM------------------GHIPRTITFNNVIQALCGVGKIHK 194
LL LEM G P T+N +I L GK +
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE 529
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G +P ++ +I L +Q
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D + K S L E +F+S+ + +V F L+
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI--------------- 588
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + GRV++ E+ + G+ + TY ++ GF KVG N A+++ E I GV
Sbjct: 589 -NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647
Query: 155 TQNVVTLIQLLQRL 168
+ +T+ +L L
Sbjct: 648 YPDTITIRNMLTGL 661
>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 402
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++EA +L+ +K+D P+V TYT ++D C G+ +EAM L + E G+ +
Sbjct: 240 KIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYT 299
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+Q LE G +P IT+N +I+ C +HKA+ LL M E
Sbjct: 300 VLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQ 358
Query: 206 GKIPSRTSHDMLI 218
+P +++ LI
Sbjct: 359 NLVPDLITYNTLI 371
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EA + + G+KPD YT ++ FC +EA LL +E G+ NV+T
Sbjct: 274 GQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITY 333
Query: 162 IQLL----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + LE +P IT+N +I C G + A LL LM E
Sbjct: 334 NALIKGFCKKNVHKAMGLLSKMLEQNLVPDLITYNTLIAGQCSSGNLDSAYRLLSLMEES 393
Query: 206 GKIPSR 211
G +P++
Sbjct: 394 GLVPNQ 399
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ +G V EA + + + G PD +TYT+ + G C+ + A ++ E + G +N
Sbjct: 165 YCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRN 224
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V+ QL+ L + P T+ +I ALCG G+ +A+ L
Sbjct: 225 EVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFK 284
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M E G P + +LI+
Sbjct: 285 QMSESGIKPDDCMYTVLIQSF 305
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 25/141 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VEE + + D + PD+YT+ +++G+CK+G EA + + I+ G + T
Sbjct: 134 GLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTY 193
Query: 162 IQLLQRLEMGHIPRT---------------------ITFNNVIQALCGVGKIHKALLLLF 200
+ GH R +++ +I L KI +AL LL
Sbjct: 194 TSFIT----GHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLV 249
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M + P+ ++ +LI L
Sbjct: 250 KMKDDNCCPNVRTYTVLIDAL 270
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F + H V+ A+++ + +G + +YT ++ G + + +EA+ LL +
Sbjct: 192 TYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKM 251
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+ NV T L+ L E G P + +IQ+ C +
Sbjct: 252 KDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTL 311
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIK 219
+A LL M E+G +P+ +++ LIK
Sbjct: 312 DEASGLLEHMLENGLMPNVITYNALIK 338
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A + ++ G+ PD++TY +++ GFC GR ++A +LL E +ER ++ +VVT
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G IP TIT++++I C ++ A + +LM
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 205 HGKIPSRTSHDMLI 218
G P+ + + LI
Sbjct: 389 KGCSPNLITFNTLI 402
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 29/183 (15%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLM 112
I +S+ KDG + SD +L + E+ F+ + M+ GR +A ++L
Sbjct: 261 IIDSLCKDGRH---SDAQNLFTEM---QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------Q 166
+ + PDV TY A+++ F K G+ EA EL +E + RG+ N +T ++
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQN 374
Query: 167 RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
RL+ G P ITFN +I CG +I + LL M E G + T+++
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434
Query: 216 MLI 218
LI
Sbjct: 435 TLI 437
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M ++ + P+V T+T +++G+CK GR ++ +EL E RG+ N +T I
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P TIT N++ L ++ +A+ +L
Sbjct: 621 TLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAML 674
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 79/208 (37%), Gaps = 41/208 (19%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-------- 101
S L + F I K G + V F LL L + + A+ F H M
Sbjct: 127 CSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLF--HQMFETTCRPNV 184
Query: 102 -------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GR+ EA +L + DGL+P TY I+DG CK G + A+ LL +
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRK 244
Query: 149 AIERG-VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVG 190
E + NVV ++ L E G P T+N++I C G
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A LL M E P +++ LI
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALI 332
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 92/219 (42%), Gaps = 35/219 (15%)
Query: 23 SPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82
+ ++ ES + SL+ Q +IK L++ ID+F+ + + SV DF L+ +
Sbjct: 32 AKASGESCEAGFGGESLKLQSGFHEIKG--LEDAIDLFSDMLRSRPLPSVVDFCKLMGVV 89
Query: 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
V + D + + ++ ++ D+Y++ ++ FC + A
Sbjct: 90 VRMERPDLVISLYQK----------------MERKQIRCDIYSFNILIKCFCSCSKLPFA 133
Query: 143 MELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQA 185
+ + + G+ +VVT LL Q E P +TF ++
Sbjct: 134 LSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNG 193
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LC G+I +A+ LL M E G P++ ++ ++ + ++
Sbjct: 194 LCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 18/163 (11%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ N+ K+G + + D ++ ++ T R++ A M + G
Sbjct: 331 LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKG 390
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
P++ T+ ++DG+C R ++ MELL+E E G+ + T T
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL------------------VADTTT 432
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +I VG ++ AL LL M G P + D L+ L
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EA E+ + + G+ PD TY++++DG CK R +EA ++ + + + NVVT
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 162 IQLLQR--------------LEMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EMG + IT+ +I VG I+ AL + M
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644
Query: 205 HGKIP 209
G P
Sbjct: 645 SGVYP 649
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 28/150 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++ E+L + GL D TY ++ GF VG N A++LL E I G+ ++VT
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469
Query: 163 QLLQ----------RLEM------------------GHIPRTITFNNVIQALCGVGKIHK 194
LL LEM G P T+N +I L GK +
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE 529
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G +P ++ +I L +Q
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D + K S L E +F+S+ + +V F L+
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI--------------- 588
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + GRV++ E+ + G+ + TY ++ GF KVG N A+++ E I GV
Sbjct: 589 -NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647
Query: 155 TQNVVTLIQLLQRL 168
+ +T+ +L L
Sbjct: 648 YPDTITIRNMLTGL 661
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A + ++ G+ PD++TY +++ GFC GR ++A +LL E +ER ++ +VVT
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G IP TIT++++I C ++ A + +LM
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 205 HGKIPSRTSHDMLI 218
G P+ + + LI
Sbjct: 389 KGCSPNLITFNTLI 402
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 29/183 (15%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLM 112
I +S+ KDG + SD +L + E+ F+ + M+ GR +A ++L
Sbjct: 261 IIDSLCKDGRH---SDAQNLFTEM---QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------Q 166
+ + PDV TY A+++ F K G+ EA EL +E + RG+ N +T ++
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQN 374
Query: 167 RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
RL+ G P ITFN +I CG +I + LL M E G + T+++
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434
Query: 216 MLI 218
LI
Sbjct: 435 TLI 437
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M ++ + P+V T+T +++G+CK GR ++ +EL E RG+ N +T I
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P TIT N++ L ++ +A+ +L
Sbjct: 621 TLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAML 674
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 80/208 (38%), Gaps = 41/208 (19%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-------- 101
S L + F I K G + V F LL L + + A+ FF H M
Sbjct: 127 CSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFF--HQMFETTCRPNV 184
Query: 102 -------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GR+ EA +L + DGL+P TY I+DG CK G + A+ LL +
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRK 244
Query: 149 AIERG-VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVG 190
E + NVV ++ L E G P T+N++I C G
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A LL M E P +++ LI
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALI 332
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 92/219 (42%), Gaps = 35/219 (15%)
Query: 23 SPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82
+ ++ ES + SL+ Q +IK L++ ID+F+ + + SV DF L+ +
Sbjct: 32 AKASGESCEAGFGGESLKLQSGFHEIKG--LEDAIDLFSDMLRSRPLPSVVDFCKLMGVV 89
Query: 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
V + D + + ++ ++ D+Y++ ++ FC + A
Sbjct: 90 VRMERPDLVISLYQK----------------MERKQIRCDIYSFNILIKCFCSCSKLPFA 133
Query: 143 MELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQA 185
+ + + G+ +VVT LL Q E P +TF ++
Sbjct: 134 LSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNG 193
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LC G+I +A+ LL M E G P++ ++ ++ + ++
Sbjct: 194 LCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 18/163 (11%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ N+ K+G + + D ++ ++ T R++ A M + G
Sbjct: 331 LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKG 390
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
P++ T+ ++DG+C R ++ MELL+E E G+ + T T
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL------------------VADTTT 432
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +I VG ++ AL LL M G P + D L+ L
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EA E+ + + G+ PD TY++++DG CK R +EA ++ + + + NVVT
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 162 IQLLQR--------------LEMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EMG + IT+ +I VG I+ AL + M
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644
Query: 205 HGKIP 209
G P
Sbjct: 645 SGVYP 649
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 28/150 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++ E+L + GL D TY ++ GF VG N A++LL E I G+ ++VT
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469
Query: 163 QLLQ----------RLEM------------------GHIPRTITFNNVIQALCGVGKIHK 194
LL LEM G P T+N +I L GK +
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE 529
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G +P ++ +I L +Q
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D + K S L E +F+S+ + +V F L+
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI--------------- 588
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + GRV++ E+ + G+ + TY ++ GF KVG N A+++ E I GV
Sbjct: 589 -NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647
Query: 155 TQNVVTLIQLLQRL 168
+ +T+ +L L
Sbjct: 648 YPDTITIRNMLTGL 661
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV--- 158
G ++EA +L + +KPDV TY+++MDG+C V N+A + N RGVT NV
Sbjct: 417 GNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSY 476
Query: 159 ---------VTLIQLLQRL--EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ ++ +L EM H P IT++++I LC G+I AL L+ M+
Sbjct: 477 NIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHY 536
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G+ P +++ ++ L ++
Sbjct: 537 RGQQPDIITYNSILDALCKK 556
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 34/165 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
IFN++ G +V +N +M+N + V+EA ++ + +
Sbjct: 460 IFNTMSHRGVTANVQSYN------IMIN----------GFCKIKMVDEAMKLFKEMHHKQ 503
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
+ PDV TY++++DG CK GR + A+EL++E R G P IT
Sbjct: 504 IFPDVITYSSLIDGLCKSGRISYALELVDEMHYR------------------GQQPDIIT 545
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+N+++ ALC + KA+ LL + G P ++ +L+K L Q
Sbjct: 546 YNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQ 590
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 18/122 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
V++A +L +K G++PD+ TYT ++ G C+ G+ +A ++ + + +G +V
Sbjct: 558 HVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVY--- 614
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
+ +IQ C G +AL LL M E+G IP +++++I L
Sbjct: 615 ---------------AYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLF 659
Query: 223 QQ 224
++
Sbjct: 660 EK 661
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG--LKPDVYTYTAIMDG 132
F+D ++A+ +Q + + VG + A E+L +NDG ++PDV Y I+DG
Sbjct: 285 FHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLR--RNDGKLVQPDVVMYNTIIDG 342
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKI 192
CK N+A +L +E + + + P T+N +I C VGK+
Sbjct: 343 MCKDKHVNDAFDLYSEKVSKRI------------------FPDVFTYNALISGFCIVGKL 384
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
A+ L M IP + +L+
Sbjct: 385 KDAIDLFNKMTSKNIIPDVYTFSILV 410
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G++E+A ++ ++ G DVY YT ++ GFC G +EA+ LL++ E G + T
Sbjct: 592 GKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKT 650
>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
Length = 375
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 36/208 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L IDI + G + +N LL + D A+++ N
Sbjct: 137 LGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNT 196
Query: 99 LMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++ G+V+ A E+L + + G P + TY ++DG KVG++++A+ELL+E +G
Sbjct: 197 MLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKG 256
Query: 154 VTQNVVTLIQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKAL 196
+ +V+T L+ L G P T+N+++ LC + +A+
Sbjct: 257 LKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAI 316
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L M G P+ S+ +LI+ + +
Sbjct: 317 DFLAYMISKGCKPTEVSYTILIEGIANE 344
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 23/143 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A ++L + + G KPDV TY +++G CK GR +EA++ LN G NV+T
Sbjct: 32 VGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNI 91
Query: 164 LLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L+ + EM G P +TFN +I LC G + +A+ +L M HG
Sbjct: 92 ILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHG 151
Query: 207 KIPSRTSHDMLI------KKLDQ 223
P+ S++ L+ KK+D+
Sbjct: 152 CTPNSLSYNPLLHGFCKEKKMDR 174
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR++EA + L ++ + G +P+V T+ I+ C GR +A +LL E + +G + +VVT
Sbjct: 65 GRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTF 124
Query: 161 --LIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R + G P ++++N ++ C K+ +A+ L +M
Sbjct: 125 NILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVS 184
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ ++ L
Sbjct: 185 RGCYPDIVTYNTMLTAL 201
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQL 164
PDV TYT +++ C +AM+LL+E RG +VVT I+
Sbjct: 14 PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73
Query: 165 LQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
L + G P IT N +++++C G+ A LL M G PS + ++LI L +
Sbjct: 74 LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133
Query: 224 Q 224
+
Sbjct: 134 K 134
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K + +++ + ++ G V ++ L+ L + + A+KFF
Sbjct: 238 KVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAF 297
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N +M G + + A + L + + G KP +YT +++G G + EA+ELLNE
Sbjct: 298 TYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNEL 357
Query: 150 IERGVTQ 156
RGV +
Sbjct: 358 CSRGVVK 364
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A + ++ G+ PD++TY +++ GFC GR ++A +LL E +ER ++ +VVT
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G IP TIT++++I C ++ A + +LM
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 205 HGKIPSRTSHDMLI 218
G P+ + + LI
Sbjct: 389 KGCSPNLITFNTLI 402
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 29/183 (15%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLM 112
I +S+ KDG + SD +L + E+ F+ + M+ GR +A ++L
Sbjct: 261 IIDSLCKDGRH---SDAQNLFTEM---QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------Q 166
+ + PDV TY A+++ F K G+ EA EL +E + RG+ N +T ++
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQN 374
Query: 167 RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
RL+ G P ITFN +I CG +I + LL M E G + T+++
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434
Query: 216 MLI 218
LI
Sbjct: 435 TLI 437
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M ++ + P+V T+T +++G+CK GR ++ +EL E RG+ N +T I
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P TIT N++ L ++ +A+ +L
Sbjct: 621 TLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAML 674
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 80/208 (38%), Gaps = 41/208 (19%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-------- 101
S L + F + K G + V FN LL L + + A+ F H M
Sbjct: 127 CSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLF--HQMFETTCRPNV 184
Query: 102 -------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GR+ EA +L + DGL+P TY I+DG CK G + A+ LL +
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRK 244
Query: 149 AIERG-VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVG 190
E + NVV ++ L E G P T+N++I C G
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A LL M E P +++ LI
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALI 332
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 93/219 (42%), Gaps = 35/219 (15%)
Query: 23 SPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82
+ ++ ES + SL+ Q +IK L++ ID+F+ + + SV DF L+ +
Sbjct: 32 AKASGESCEAGFGGESLKLQSGFHEIKG--LEDAIDLFSDMLRSRPLPSVVDFCKLMGVV 89
Query: 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
V + D + + ++ ++ D+Y++T ++ FC + A
Sbjct: 90 VRMERPDLVISLYQK----------------MERKQIRCDIYSFTILIKCFCSCSKLPFA 133
Query: 143 MELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQA 185
+ + + G+ +VVT LL Q E P +TF ++
Sbjct: 134 LSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNG 193
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LC G+I +A+ LL M E G P++ ++ ++ + ++
Sbjct: 194 LCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 18/163 (11%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ N+ K+G + + D ++ ++ T R++ A M + G
Sbjct: 331 LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKG 390
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
P++ T+ ++DG+C R ++ MELL+E E G+ + T T
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL------------------VADTTT 432
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +I VG ++ AL LL M G P + D L+ L
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EA E+ + + G+ PD TY++++DG CK R +EA ++ + + + NVVT
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 162 IQLLQR--------------LEMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EMG + IT+ +I VG I+ AL + M
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644
Query: 205 HGKIP 209
G P
Sbjct: 645 SGVYP 649
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 28/150 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++ E+L + GL D TY ++ GF VG N A++LL E I G+ ++VT
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469
Query: 163 QLLQ----------RLEM------------------GHIPRTITFNNVIQALCGVGKIHK 194
LL LEM G P T+N +I L GK +
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE 529
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G +P ++ +I L +Q
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D + K S L E +F+S+ + +V F L+
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI--------------- 588
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + GRV++ E+ + G+ + TY ++ GF KVG N A+++ E I GV
Sbjct: 589 -NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647
Query: 155 TQNVVTLIQLLQRL 168
+ +T+ +L L
Sbjct: 648 YPDTITIRNMLTGL 661
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 21/208 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNS-IKKDGTNWSVSDFNDLLMALV---MLNE 87
L N R +A+ D + +K + I+ I T ++S+ +DLL +V + +
Sbjct: 318 LCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
F+ + ++EA + +K GL PDV Y A++D CK+GR ++A+ N
Sbjct: 378 HHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFN 437
Query: 148 EAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVG 190
+ + GV N+ L+ + L G P + FN ++ LC G
Sbjct: 438 QMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKG 497
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ KA L+ LM G P S+ LI
Sbjct: 498 QVMKAQRLIDLMERVGTRPGVISYTTLI 525
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
H +VGR++EA + L + + GLKPD +TY ++ G+C+ GR ++A + E + G+T
Sbjct: 526 GGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGIT 585
Query: 156 QNVVTLIQLLQRL 168
VVT +L L
Sbjct: 586 PGVVTYSTILHGL 598
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQ 156
G+V++AY + + + + G++P+V TYT ++DG CK + A + + I++GV T
Sbjct: 217 GQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTY 276
Query: 157 NVVT-----------LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
N + ++++L+ + G P T+ +++ LC G+ +A L M
Sbjct: 277 NCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIR 336
Query: 205 HGKIPSRTSHDMLI 218
G P+ + +LI
Sbjct: 337 KGIKPNVAIYGILI 350
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 17/152 (11%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+ DT +L +G+ +E ML + GLKPD YTY ++++ C GR EA L
Sbjct: 272 DNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLF 331
Query: 147 NEAIERGVTQNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGV 189
+ I +G+ NV L+ +E G P FN + A
Sbjct: 332 DSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKK 391
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +A+ + M + G P ++ LI L
Sbjct: 392 AMIDEAMHIFNKMKQQGLSPDVVNYGALIDAL 423
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 89 DTAVKFFSNHLMVGRVEEAYE---MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
+T +K F N R EEA E M+ + + P+V +Y +++GF G+ ++A L
Sbjct: 169 NTLLKGFCNE---KRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNL 225
Query: 146 LNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCG 188
E ++RG+ NVVT ++ Q ++ G P T+N +I
Sbjct: 226 FLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLS 285
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+GK + + +L M HG P ++ L+ L
Sbjct: 286 IGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYL 318
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 37/181 (20%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNHLM 100
FN + +G ++ FN L+ L +++ + A +F+ N
Sbjct: 436 FNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCT 495
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+V +A ++ ++ G +P V +YT ++ G C VGR +EA + L+ + G+
Sbjct: 496 KGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLK----- 550
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P T+N ++ C G+I A + M +G P ++ ++
Sbjct: 551 -------------PDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHG 597
Query: 221 L 221
L
Sbjct: 598 L 598
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 103 RVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLN---EAIERGVTQNV 158
R+ EA ++L+ + G PDV +Y ++ GFC R+ EA+ELL+ ++ R NV
Sbjct: 144 RLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNV 203
Query: 159 VTLI-----------------QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
V+ L+ ++ G P +T+ VI LC + +A +
Sbjct: 204 VSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQ 263
Query: 202 MYEHGKIPSRTSHDMLI 218
M + G P +++ LI
Sbjct: 264 MIDKGVKPDNDTYNCLI 280
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
D+++++ + ++ T + GR+++AY + + +G+ P V TY+ I+ G
Sbjct: 542 DVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTT 601
Query: 137 GRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMGHIPRTI-TF 179
R +EA EL I G N+ +L Q L I TF
Sbjct: 602 RRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTF 661
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
N +I AL G+ A+ L + +G +P ++ ++ + L ++
Sbjct: 662 NIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEE 706
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------HL 99
E +++ ++ G W++ +N +L L N D A K F + ++
Sbjct: 604 FSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNI 663
Query: 100 MVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
M+G R E+A + + + GL PDV+TY I + + G E +L + + G
Sbjct: 664 MIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723
Query: 154 VTQNVVTLIQLLQR-LEMGHIPRTITF 179
T N L L++R L G I R +
Sbjct: 724 TTPNSRMLNALVRRLLHRGDITRAGAY 750
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 27/187 (14%)
Query: 37 RSLQAQRFVDKIKASP---LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
R L+ +R + S L + + +F+ + SV FN LL A+ ++ + ++
Sbjct: 11 RCLELERVIGSRARSGSLGLDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTT 70
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ L+V + ++ + PD TY+ ++ FC++GR ++ G
Sbjct: 71 --ESELVV----SLFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSG 124
Query: 154 VTQNVVTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
N + + QLL+ L E+G P +++N +++ C + +A
Sbjct: 125 WRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEA 184
Query: 196 LLLLFLM 202
L LL +M
Sbjct: 185 LELLHMM 191
>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
Length = 441
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 18/133 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++EA +L+ +K+D P+V TYT ++D C G+ +EAM L + E G+ +
Sbjct: 240 KIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYT 299
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+Q LE G +P IT+N +I+ C +HKA+ LL M E
Sbjct: 300 VLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQ 358
Query: 206 GKIPSRTSHDMLI 218
+P +++ LI
Sbjct: 359 NLVPDLITYNTLI 371
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ +G V EA + + + G PD +TYT+ + G C+ + A ++ E + G +N
Sbjct: 165 YCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRN 224
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V+ QL+ L + P T+ +I ALCG G+ +A+ L
Sbjct: 225 EVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFK 284
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M E G P + +LI+
Sbjct: 285 QMSESGIKPDDCMYTVLIQSF 305
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 25/141 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VEE + + D + PD+YT+ +++G+CK+G EA + + I+ G + T
Sbjct: 134 GLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTY 193
Query: 162 IQLLQRLEMGHIPRT---------------------ITFNNVIQALCGVGKIHKALLLLF 200
+ GH R +++ +I L KI +AL LL
Sbjct: 194 TSFIT----GHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLV 249
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M + P+ ++ +LI L
Sbjct: 250 KMKDDNCCPNVRTYTVLIDAL 270
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F + H V+ A+++ + +G + +YT ++ G + + +EA+ LL +
Sbjct: 192 TYTSFITGHCRRKEVDAAFKVFKEMTQNGCHRNEVSYTQLIYGLFEAKKIDEALSLLVKM 251
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+ NV T L+ L E G P + +IQ+ C +
Sbjct: 252 KDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTL 311
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIK 219
+A LL M E+G +P+ +++ LIK
Sbjct: 312 DEASGLLEHMLENGLMPNVITYNALIK 338
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A + ++ G+ PD++TY +++ GFC GR ++A +LL E +ER ++ +VVT
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G IP TIT++++I C ++ A + +LM
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMAT 388
Query: 205 HGKIPSRTSHDMLI 218
G P+ + + LI
Sbjct: 389 KGCSPNLITFNTLI 402
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 29/183 (15%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLM 112
I +S+ KDG + SD +L + E+ F+ + M+ GR +A ++L
Sbjct: 261 IIDSLCKDGRH---SDAQNLFTEM---QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------Q 166
+ + PDV TY A+++ F K G+ EA EL +E + RG+ N +T ++
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQN 374
Query: 167 RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
RL+ G P ITFN +I CG +I + LL M E G + T+++
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434
Query: 216 MLI 218
LI
Sbjct: 435 TLI 437
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 82/208 (39%), Gaps = 41/208 (19%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-------- 101
S L + F I K G + V FN LL L + + A+ F H M
Sbjct: 127 CSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLF--HQMFETTCRPNV 184
Query: 102 -------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GR+ EA +L + DGL+P TY I+DG CK+G + A++LL +
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRK 244
Query: 149 AIE-RGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVG 190
E + NVV ++ L E G P T+N++I C G
Sbjct: 245 MEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A LL M E P +++ LI
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALI 332
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M ++ + P+V T+T +++G+CK GR ++ +EL E RG+ N +T I
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P TIT N++ L ++ +A+ +L
Sbjct: 621 TLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAML 674
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 23 SPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82
+ ++ ES + SL+ Q +IK L++ ID+F+ + + SV DF L+ +
Sbjct: 32 AKASGESCEAGFGGESLKLQSGFHEIKG--LEDAIDLFSDMLRSRPLPSVVDFCKLMGVV 89
Query: 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
V + D + + ++ ++ D+Y++T ++ FC + A
Sbjct: 90 VRMERPDLVISLYQK----------------MERKQIRCDIYSFTILIKCFCSCSKLPFA 133
Query: 143 MELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQA 185
+ + + G+ +VVT LL Q E P +TF ++
Sbjct: 134 LSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNG 193
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LC G+I +A+ LL M E G P++ ++ ++ +
Sbjct: 194 LCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 18/163 (11%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ N+ K+G + + D ++ ++ T R++ A M + G
Sbjct: 331 LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKG 390
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
P++ T+ ++DG+C R ++ MELL+E E G+ + T T
Sbjct: 391 CSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL------------------VADTTT 432
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +I VG ++ AL LL M G P + D L+ L
Sbjct: 433 YNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGL 475
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EA E+ + + G+ PD TY++++DG CK R +EA ++ + + + NVVT
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 584
Query: 162 IQLLQR--------------LEMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EMG + IT+ +I VG I+ AL + M
Sbjct: 585 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644
Query: 205 HGKIP 209
G P
Sbjct: 645 SGVYP 649
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 28/150 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++ E+L + GL D TY ++ GF VG N A++LL E I G+ ++VT
Sbjct: 410 RIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCD 469
Query: 163 QLLQ----------RLEM------------------GHIPRTITFNNVIQALCGVGKIHK 194
LL LEM G P T+N +I L GK +
Sbjct: 470 TLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLE 529
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G +P ++ +I L +Q
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D + K S L E +F+S+ + +V F L+
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLI--------------- 588
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + GRV++ E+ + G+ + TY ++ GF KVG N A+++ E I GV
Sbjct: 589 -NGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647
Query: 155 TQNVVTLIQLLQRL 168
+ +T+ +L L
Sbjct: 648 YPDTITIRNMLTGL 661
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 21/208 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFN-SIKKDGTNWSVSDFNDLLMALV---MLNE 87
L +N R +A+ F D + +K + + + T ++S+ +DLL +V +
Sbjct: 318 LCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPN 377
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
FFS + G +++A ++ ++ GL PD +Y A++D CK+GR ++A N
Sbjct: 378 HHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFN 437
Query: 148 EAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVG 190
+ I GVT ++V L+ + L +G P + FN ++ LC G
Sbjct: 438 QMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEG 497
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ + L+ + G P S++ LI
Sbjct: 498 RVMEGQRLVDSIECMGVRPDVISYNTLI 525
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G+V++ Y + + + + G+ PDV TYT ++DG CK + A + + I+ GV N+ T
Sbjct: 217 GQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTY 276
Query: 161 ---------------LIQLLQRLEMGH-IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++++L+ + G P T+ +++ LC G+ +A M
Sbjct: 277 NCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIG 336
Query: 205 HGKIPSRTSHDMLI 218
G PS T++ +++
Sbjct: 337 KGIKPSVTTYGIML 350
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 31/138 (22%)
Query: 31 DLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90
+L + R ++ QR VD I+ ++ + +N++
Sbjct: 492 NLCKEGRVMEGQRLVDSIECMGVRPDVISYNTL--------------------------- 524
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
H + G ++EA ++L + + GLKPD ++Y ++ G+CK GR + A + +
Sbjct: 525 ----IDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKML 580
Query: 151 ERGVTQNVVTLIQLLQRL 168
G+T VVT +L L
Sbjct: 581 SNGITPGVVTYNTILHGL 598
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 74/183 (40%), Gaps = 37/183 (20%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----------------- 102
FN + +G + F+ L+ L +++ + + F L VG
Sbjct: 436 FNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCK 495
Query: 103 --RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
RV E ++ +++ G++PDV +Y ++DG C G +EA +LL + G+
Sbjct: 496 EGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLK----- 550
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P + ++N ++ C G+I A M +G P +++ ++
Sbjct: 551 -------------PDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHG 597
Query: 221 LDQ 223
L Q
Sbjct: 598 LFQ 600
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 60/150 (40%), Gaps = 17/150 (11%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
DT +L +G+ +E ML + G KP+ TY ++++ CK GR EA +
Sbjct: 274 DTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDS 333
Query: 149 AIERGVTQNVVTLIQLLQRL-------EM----------GHIPRTITFNNVIQALCGVGK 191
I +G+ +V T +L EM G P FN A G
Sbjct: 334 MIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGI 393
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I KA+ + M + G P S+ LI L
Sbjct: 394 IDKAMDIFNKMRQQGLSPDAVSYGALIDAL 423
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
R+++AY + + GL PDV TY I+ G + GR +EA EL I N+ T
Sbjct: 806 RIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYN 865
Query: 162 ---------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++ Q L G ITFN +I AL G+ A+ L + +
Sbjct: 866 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPAN 925
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G +P ++ ++ + L ++
Sbjct: 926 GLVPDVVTYRLVAENLIEE 944
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 20/139 (14%)
Query: 103 RVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
R EEA E+L + +D P+V +Y+ +++GF G+ ++ L E ++RG+ +VV
Sbjct: 180 RAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVV 239
Query: 160 TLI---------QLLQRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T QL R E G P T+N +I +GK + + +L M
Sbjct: 240 TYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEM 299
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P+ ++ L+ L
Sbjct: 300 SAGGPKPNCCTYGSLLNYL 318
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 103 RVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ---NV 158
RV EA ++L+ + G PD +Y ++ G C R+ EA+ELL+ + V NV
Sbjct: 144 RVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNV 203
Query: 159 V---TLIQ--------------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
V T+I L+ ++ G P +T+ VI LC +A +
Sbjct: 204 VSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQ 263
Query: 202 MYEHGKIPSRTSHDMLI 218
M ++G P+ +++ LI
Sbjct: 264 MIDNGVKPNIDTYNCLI 280
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 20/147 (13%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------HL 99
E +++ ++ GT W + +N +L L N D A+K F N ++
Sbjct: 604 FSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNI 663
Query: 100 MVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
M+G R E+A ++ + +GL +V TY +++ + G E L + + G
Sbjct: 664 MIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNG 723
Query: 154 VTQNVVTLIQLLQR-LEMGHIPRTITF 179
N L L++R L G I R +
Sbjct: 724 TAPNSQMLNALVRRLLHRGDISRAGAY 750
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 81/199 (40%), Gaps = 51/199 (25%)
Query: 37 RSLQAQRFV-DKIKASPLK--ERIDIFNSIKKDGTNWSVSDFNDLLMALV-------MLN 86
R L+ +R + D+ ++ L + + +F+ + SV FN LL A+ +
Sbjct: 11 RCLELERVIADRARSGSLGLGDALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTS 70
Query: 87 EQDTAVKFFSNHLM----------------------VGRVEEAYEMLMNVKNDGLKPDVY 124
E +T V F+ + +G +E + + G + D
Sbjct: 71 ESETVVSLFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHI 130
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHIPRTITFNNVI 183
+++G C R EAM++ LLQR+ E+G +P T+++N ++
Sbjct: 131 VINQLLNGLCDGKRVGEAMDV------------------LLQRMPELGCMPDTVSYNILL 172
Query: 184 QALCGVGKIHKALLLLFLM 202
+ LC + +AL LL +M
Sbjct: 173 KGLCNEKRAEEALELLHMM 191
>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 21/206 (10%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
+A+ F+ ++A +K + +N+I G DL+ + + T F
Sbjct: 209 KAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFI 268
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S G++EEA ML +K GL+P TY ++DG+C G A + ++ + G+
Sbjct: 269 SGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLM 328
Query: 156 QNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLL 198
V T L+ L E G +P ++T+N +I C G + KA L
Sbjct: 329 PTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTL 388
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQQ 224
M G P+R ++ LI L ++
Sbjct: 389 HDEMISKGIQPTRVTYTSLIYVLSKR 414
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A E + ++ G+KP+V TY I+ G+C GR A + + RGV + T
Sbjct: 205 GKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTY 264
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ + E+G P +T+N +I C G + A M
Sbjct: 265 GSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVR 324
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ ++++MLI L
Sbjct: 325 EGLMPTVSTYNMLIHAL 341
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +K+ D+F I + G F DL+M +++ H G ++ A+
Sbjct: 413 KRGRMKQADDLFEKIVRKGI------FPDLIMFNALID----------GHCANGNMDRAF 456
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
ML + + PD T+ +M G C+ G+ A EL+ E RG+ + ++ L+
Sbjct: 457 AMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGY 516
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ L +G P +T+N +IQ LC + A LL M G P+
Sbjct: 517 SKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPND 576
Query: 212 TSHDMLIKKL 221
++ LI+ +
Sbjct: 577 NTYLSLIEGI 586
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVM---LNEQDTAVKFFSNHLMV-------- 101
L+ D + + ++G +VS +N L+ AL + ++E D +K S +V
Sbjct: 312 LEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNI 371
Query: 102 --------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
G V++A+ + + + G++P TYT+++ K GR +A +L + + +G
Sbjct: 372 LINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKG 431
Query: 154 VTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ +++ +L+ + +M +P +TFN ++Q C GK+ A
Sbjct: 432 IFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAAR 491
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L+ M G P S++ LI ++
Sbjct: 492 ELIEEMKSRGIKPDHISYNTLISGYSKR 519
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A + ++ G+ PD++TY +++ GFC GR ++A +LL E +ER ++ +VVT
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G IP TIT+N++I C ++ A + +LM
Sbjct: 329 NALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMAT 388
Query: 205 HGKIPSRTSHDMLI 218
G P + LI
Sbjct: 389 KGCSPDVFTFTTLI 402
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 18/173 (10%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ N+ K+G + ++ D ++ ++ T R++ A +M + G
Sbjct: 331 LINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKG 390
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
PDV+T+T ++DG+C R ++ MELL+E RG+ N VT L+
Sbjct: 391 CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAAL 450
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
Q + G P +T N ++ LC GK+ A L +F + K+ SH
Sbjct: 451 DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDA-LEMFKAMQKSKMDLDASH 502
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 29/183 (15%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLM 112
I +S+ KDG + SD +L + E+ F+ + M+ GR +A ++L
Sbjct: 261 IIDSLCKDGRH---SDAQNLFTEM---QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQ 314
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------ 166
+ + PDV TY A+++ F K G+ EA EL +E + RG+ N +T ++
Sbjct: 315 EMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQD 374
Query: 167 RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
RL+ G P TF +I CG +I + LL M G + + +++
Sbjct: 375 RLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYN 434
Query: 216 MLI 218
LI
Sbjct: 435 TLI 437
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 80/208 (38%), Gaps = 41/208 (19%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-------- 101
S L + F I K G + V F LL L + + A+ FF H M
Sbjct: 127 CSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFF--HQMFETTCRPNV 184
Query: 102 -------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GR+ EA +L + DGL+P TY I+DG CK G + A+ LL +
Sbjct: 185 VTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRK 244
Query: 149 AIERG-VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVG 190
E + NVV ++ L E G P T+N++I C G
Sbjct: 245 MEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSG 304
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A LL M E P +++ LI
Sbjct: 305 RWSDAEQLLQEMLERKISPDVVTYNALI 332
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 92/219 (42%), Gaps = 35/219 (15%)
Query: 23 SPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82
+ ++ ES + SL+ Q +IK L++ ID+F+ + + SV DF L+ +
Sbjct: 32 AKASGESCEAGFGGESLKLQSGFHEIKG--LEDAIDLFSDMLRSRPLPSVVDFCKLMGVV 89
Query: 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
V + D + + ++ ++ D+Y++ ++ FC + A
Sbjct: 90 VRMERPDLVISLYQK----------------MERKQIRCDIYSFNILIKCFCSCSKLPFA 133
Query: 143 MELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQA 185
+ + + G+ +VVT LL Q E P +TF ++
Sbjct: 134 LSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNG 193
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LC G+I +A+ LL M E G P++ ++ ++ + ++
Sbjct: 194 LCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M +++ + P+V T+ +++G+CK GR ++ +EL E RG+ + + I
Sbjct: 561 RLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYI 620
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P TIT N++ ++ +A+ +L
Sbjct: 621 TLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAML 674
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 28/150 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++ E+L + GL + TY ++ GFC VG N A++L + I GV ++VT
Sbjct: 410 RIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCN 469
Query: 163 QLLQ----------RLEM------------------GHIPRTITFNNVIQALCGVGKIHK 194
LL LEM G P +T+N +I L GK +
Sbjct: 470 TLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLE 529
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G +P ++ +I L +Q
Sbjct: 530 AEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EA E+ + + G+ PD TY++++DG CK R +EA ++ + + NVV
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVV-- 582
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN +I C G++ L L M G + + LI
Sbjct: 583 ----------------TFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLI 623
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D + K S L E +F S+ + +V FN L+
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI--------------- 588
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + GRV++ E+ + G+ D Y ++ GF KVG N A+++ E I GV
Sbjct: 589 -NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 647
Query: 155 TQNVVTLIQLL 165
+ +T+ +L
Sbjct: 648 YPDTITIRNML 658
>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 665
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A ++L +++ G KPDV TY +++G CK GR +EA+ LN G NV+T
Sbjct: 263 VGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNI 322
Query: 164 LLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L+ + EM G P +TFN +I LC G I +A+ +L M +HG
Sbjct: 323 ILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHG 382
Query: 207 KIPSRTSHDMLIKKL 221
P+ S++ L+ L
Sbjct: 383 CTPNSLSYNPLLHAL 397
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 104/248 (41%), Gaps = 48/248 (19%)
Query: 3 ISAANSPTPFSV-LLVDSPSRSPSAAESLDLKE-------NPRSLQAQRFVDKI-KASPL 53
I SP+ + +L++ R ++D+ E P SL + + K +
Sbjct: 344 IRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKM 403
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------- 99
+ I+ + + G + +N LL AL + D AV+ N L
Sbjct: 404 ERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL-NQLGSKGCSPVLITYNT 462
Query: 100 ------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
VG+ ++A ++L +K GLKPD+ TY+ ++ G + G+ +EA+ ++ E G
Sbjct: 463 VIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMG 522
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
V P IT+N+++ LC + +A+ L M G P+ TS
Sbjct: 523 VK------------------PNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETS 564
Query: 214 HDMLIKKL 221
+ +LI+ L
Sbjct: 565 YMILIEGL 572
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA L ++ + G +P+V T+ I+ C GR +A + L E I +G + +VVT
Sbjct: 296 GRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTF 355
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I +L+++ + G P ++++N ++ ALC K+ +A+ L +M
Sbjct: 356 NILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVS 415
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 416 RGCYPDIVTYNTLLTAL 432
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 34/168 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
ID+ + + G + +N LL AL + + A+++ +MV R
Sbjct: 372 IDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLD--IMVSR------------- 416
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G PD+ TY ++ CK G+ + A+E+LN+ +G + P
Sbjct: 417 -GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCS------------------PVL 457
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
IT+N VI L VGK A+ LL M G P ++ L+ L ++
Sbjct: 458 ITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSRE 505
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA E+L PDV TYT +++ CK +AM+LL+E ++G +VVT
Sbjct: 226 GKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTY 285
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+ L + G P IT N +++++C G+ A L M
Sbjct: 286 NVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIR 345
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G PS + ++LI L ++
Sbjct: 346 KGCSPSVVTFNILINFLCRK 365
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 71/134 (52%), Gaps = 18/134 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA---MELLNE--AIERGVTQ 156
G +EE ++ L ++ G PD+ T+++ G CK G++ +A ME+L + A+ +T
Sbjct: 124 GELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITY 183
Query: 157 NVV-----------TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
NV+ + +QLL R+ + P +T+N +++ LC GK+ +A+ +L +
Sbjct: 184 NVLISGYCKTGEIGSALQLLDRMSVS--PDVVTYNTILRTLCDSGKLKEAMEVLDRQMQR 241
Query: 206 GKIPSRTSHDMLIK 219
P ++ +LI+
Sbjct: 242 ECYPDVITYTILIE 255
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ +A ++ +++ G PDV TY ++ G+CK G A++LL+ V+ +VVT
Sbjct: 159 GKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTY 215
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L+ L + G + P IT+ +I+A C + +A+ LL M +
Sbjct: 216 NTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRD 275
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P ++++LI + ++
Sbjct: 276 KGCKPDVVTYNVLINGICKE 295
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 16/108 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ + E I F+ +++ G + +N +++ L + A+ F + MV R
Sbjct: 504 REGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLA--YMVAR----- 556
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
G KP +Y +++G G + EA+ELLNE RGV +
Sbjct: 557 ---------GCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVK 595
>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 418
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G + E +++ + G
Sbjct: 158 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLNEGFKLKSAMHASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL E + +G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G +++A L+ M G P + ++ LI
Sbjct: 262 EVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLI 318
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A++++ + GLKPD TYT ++DG CK G + A E I+ + + V
Sbjct: 290 GALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G P T T+ +I C G + K LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 409
Query: 205 HGKIPS 210
G PS
Sbjct: 410 DGHAPS 415
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G NE +L +
Sbjct: 137 YFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSA 196
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGR 256
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 257 VDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKK 289
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +M+ + + GLKPD TYT I++ FCK G + +LL E G +VVT
Sbjct: 360 GRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ + G+++EA + + + G P+VYTYT++M+G+CK+ R EA++LL+E + +G+
Sbjct: 211 GYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVP 270
Query: 157 NVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
++VT ++ L GH P +T+ ++ LC G + +A L
Sbjct: 271 DIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALF 330
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M P+ + +LI L
Sbjct: 331 QEMQRSTVKPNLVIYTILIDSL 352
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 17/152 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + + R+EEA ++L GL PD+ T+T I+ G C+ GR A +L
Sbjct: 239 TYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYI 298
Query: 150 IERGVTQNVVTL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKI 192
G T N++T L Q ++ + P + + +I +LC GKI
Sbjct: 299 CAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKI 358
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L + + G P+ ++ L+ L ++
Sbjct: 359 KDGKELFSRLIDEGLKPNVYTYTALVGALCKE 390
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA+ + ++ +KP++ YT ++D CK G+ + EL + I+ G+ NV
Sbjct: 321 GNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVY-- 378
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ ++ ALC G I +A L M E G P + +++++I+
Sbjct: 379 ----------------TYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGF 422
Query: 222 DQQ 224
Q
Sbjct: 423 LQH 425
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 33/182 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+ + + I K G S+ F LL L M + D + + + L+
Sbjct: 117 LSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLV---------------- 160
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ----RLEM-- 170
GL+P+VYTY I++ K G++NEA+ L + + G NVV L+ R +M
Sbjct: 161 RGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDE 220
Query: 171 -----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G P T+ +++ C + +I +A+ LL G +P + +I
Sbjct: 221 ARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIIS 280
Query: 220 KL 221
L
Sbjct: 281 GL 282
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV+ +L + GL+P + T+T +++G C G+ ++ M L ++ + RG+ NV T
Sbjct: 112 RVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYN 171
Query: 162 ---------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ L+++E +G +P + ++ +I C G++ +A + LM
Sbjct: 172 VIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSK 231
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ L+
Sbjct: 232 GCTPNVYTYTSLM 244
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 70/143 (48%), Gaps = 17/143 (11%)
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
K FS+ + +G E + ++ G++ D+++ + +++ FC + R + + +L++ ++
Sbjct: 67 KLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVLSKILKL 126
Query: 153 GVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKA 195
G+ ++VT LL L M G P T+N +I +L GK ++A
Sbjct: 127 GLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEA 186
Query: 196 LLLLFLMYEHGKIPSRTSHDMLI 218
L L M + G +P+ ++ LI
Sbjct: 187 LGFLKQMEKVGCVPNVVNYSTLI 209
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +K+ ++F+ + +G +V + L+ AL G + EA+
Sbjct: 354 KCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCK----------------EGLIIEAH 397
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
++ ++ DG PD Y I+ GF + + A +L+ E + RG + + T
Sbjct: 398 KLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAAT 449
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 74/137 (54%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +A +++ ++ +G+ PD++TY +++G CK+G ++A LLN AI +G ++ T
Sbjct: 377 GLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTF 436
Query: 162 IQLL----QRLEM-------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ +RL+M G P IT+N+++ LC K + ++ E
Sbjct: 437 NTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIME 496
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ ++++LI+ L
Sbjct: 497 KGCLPNIITYNILIESL 513
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 38/181 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
KA + E +D+ I+ G F ++ + D A + F
Sbjct: 515 KARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTV 574
Query: 96 -SNHLMVGRVEEAYEMLMNVK------NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ ++M+ E +M M K + G PD YTY ++DGFCKVG N +
Sbjct: 575 ATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDF--- 631
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
LL+ +E+G +P TF VI LC ++H+A+ ++ LM G +
Sbjct: 632 ---------------LLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVV 676
Query: 209 P 209
P
Sbjct: 677 P 677
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V +A +L G PD++T+ ++DG+CK + + A+ +L+ GVT +V+T
Sbjct: 411 MGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVIT 470
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+L L E G +P IT+N +I++LC K+ +AL LL +
Sbjct: 471 YNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIR 530
Query: 204 EHGKIPSRTSHDMLI 218
G IP S +I
Sbjct: 531 NRGLIPDPVSFGTVI 545
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 83/193 (43%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ ++E +D+F + S+ +N ++ LV G +A+
Sbjct: 88 RKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEY----------------GYFNQAH 131
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
++ + +K++G+ PDV T+T + FC+ R A+ LLN +G N V ++
Sbjct: 132 KVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGF 191
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ L +G P TFN ++ LC G + + LL + ++G P+
Sbjct: 192 YEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNL 251
Query: 212 TSHDMLIKKLDQQ 224
+ ++ I+ L ++
Sbjct: 252 FTFNIFIQGLCRK 264
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV- 159
VG++++A +L + K G PD +TY +++ G C+ G + A+ L EA+ +G+ ++V
Sbjct: 306 VGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVL 365
Query: 160 --TLIQ-------LLQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
TLI+ +L+ L++ G P T+N VI LC +G + A LL
Sbjct: 366 YNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAI 425
Query: 204 EHGKIPSRTSHDMLI 218
G +P + + LI
Sbjct: 426 AKGYLPDIFTFNTLI 440
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 27/176 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L+E + N + K+G ++ FN + L + A +V EA
Sbjct: 228 KKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANS---------KVVEAE 278
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
L + N GL+PD +TY I+ G+ KVG+ +A +L +A +G
Sbjct: 279 NYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGF-------------- 324
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+P T+ ++I +C G I AL L G PS ++ LIK L QQ
Sbjct: 325 ----VPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQ 376
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V EA ++L ++N GL PD ++ ++ GFC G +EA +L ++ + V
Sbjct: 518 KVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATY 577
Query: 163 QLL-----QRLEM-------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ ++L+M G P + T+ +I C VG ++ L E
Sbjct: 578 NIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIE 637
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +PS T+ +I L Q
Sbjct: 638 IGFVPSLTTFGRVINCLCVQ 657
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-----RVEEAYEMLMN 113
+ ++I K+G VS+ +L + + + V + S LM G V EA ++
Sbjct: 314 LVDTICKEG---KVSEAQGVLKTMTEMGVEPDVVTYSS--LMYGYSLRSEVVEARKLFDA 368
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
+ G KPDV++Y +++G+CKV R +EA +L NE I +G+T
Sbjct: 369 MITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLT------------------ 410
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
P +++N +I LC +G + +A L M+ +G +P+ ++ +L+ +Q
Sbjct: 411 PNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQ 461
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 26/188 (13%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--NHLM-VGRVEEAYEMLMN 113
I+ F+ +++ +SV L ++ L Q T V F + N L VG+ +A E+ +
Sbjct: 140 INCFSHLQRVDLAFSV------LAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDD 193
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-------- 165
+ G +PDVYTYT I++G CK+G + A LL + E G NVVT ++
Sbjct: 194 MVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRR 253
Query: 166 --QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
+ L++ G P T+N++IQ LC + +A LL M +P + ++
Sbjct: 254 VNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNV 313
Query: 217 LIKKLDQQ 224
L+ + ++
Sbjct: 314 LVDTICKE 321
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV EA ++ +K G+ PD++TY +++ G C + EA LLNE
Sbjct: 253 RVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNE-------------- 298
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ L + +P +TFN ++ +C GK+ +A +L M E G P ++ L+
Sbjct: 299 --MRSLNI--MPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLM 350
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 35/189 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E +FN + G + +N L+ L L G + EA
Sbjct: 390 KVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQL----------------GSLREAR 433
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
+ N+ +G P+++TY+ ++DGFCK G +A L A++ ++ + + +L
Sbjct: 434 NLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLF-RAMQSTYSKPNLVMYNILIDA 492
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ G P + +I LC G + +AL M E G P
Sbjct: 493 MCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPD 552
Query: 211 RTSHDMLIK 219
S++++I+
Sbjct: 553 EISYNVIIR 561
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL----------QR 167
GL P++YT + +++ F + R + A +L + I+ G+ +VT L+ Q
Sbjct: 128 GLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQA 187
Query: 168 LEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+E+ G P T+ +I LC +G+ A LL M E G P+ ++ +I
Sbjct: 188 MELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTII 245
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++EA E N++ DG PD +Y I+ GF + A++L+ E ++G +V T
Sbjct: 532 GLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590
>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 550
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 23/151 (15%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S + + V EA ++ G+ PDV++Y ++ G+CK R +EA+ L N+ + +
Sbjct: 331 SGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLA 390
Query: 156 QNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLL 198
N+VT L+ L + G P IT+N ++ ALC + + KA+ L
Sbjct: 391 PNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIEL 450
Query: 199 LFLMYEHGKIPSRTSHDMLI------KKLDQ 223
LM+E G P+ +S+++LI K++D+
Sbjct: 451 FNLMFERGLTPNVSSYNILINGYCKSKRIDE 481
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 40/186 (21%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------L 99
+F++ + G V +N L++ N D A+ F+
Sbjct: 345 LFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLC 404
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV- 158
GR+ A+E+ + + G P+V TY ++D CK+ ++A+EL N ERG+T NV
Sbjct: 405 KSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVS 464
Query: 159 ------------------VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+ L + + R + +P ++T+N +I LC G+I A L
Sbjct: 465 SYNILINGYCKSKRIDEAMNLFEEMHRRNL--VPDSVTYNCLIDGLCKSGRISHAWELFN 522
Query: 201 LMYEHG 206
+M++ G
Sbjct: 523 VMHDGG 528
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 17/162 (10%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
+F+D ++A L ++ T + +G EA+E+L ++ ++P+V Y I+DG
Sbjct: 169 EFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGL 228
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------------RLEMGHIPRTI---- 177
CK G EA +L ++ + RG+ +V T L+ RL + R +
Sbjct: 229 CKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNV 288
Query: 178 -TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+N +I ALC G + KA + LM E G+ P + + L+
Sbjct: 289 YTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLM 330
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 33 KENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA 91
K P + +D + K+ + ++F++I G + +V +N +L AL + D A
Sbjct: 388 KLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKA 447
Query: 92 VKFFS--------------NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132
++ F+ N L+ G R++EA + + L PD TY ++DG
Sbjct: 448 IELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDG 507
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVT 160
CK GR + A EL N + G +V+T
Sbjct: 508 LCKSGRISHAWELFNVMHDGGPPVDVIT 535
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +A E +V G D TY +++G CK+G + EA ELL++ + V NVV
Sbjct: 162 GEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIY 221
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L G P T+ +I CG+G+ + LL M +
Sbjct: 222 NMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVD 281
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+ ++++LI L ++
Sbjct: 282 RNVNLNVYTYNILIDALCKK 301
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 33/168 (19%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
SV +FN +L ++V + TA+ M ++ G+ P + T + ++
Sbjct: 77 SVVEFNMILGSIVKMKHYPTAISLSKQ--------------MGLR--GITPSIVTLSILI 120
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-----------------GHI 173
+ +C +G A +L ++RG N +TL +++ L + G +
Sbjct: 121 NCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFL 180
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+T+ +I LC +G +A LL M P+ ++M++ L
Sbjct: 181 LDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGL 228
>gi|357451329|ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484989|gb|AES66192.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 472
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA ++ ++ +G KPD + Y IM G+C + R +EA+E+ N E+GV +++T
Sbjct: 253 LREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNT 312
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L E GH P +T+ +++ +C G+ AL LL M G
Sbjct: 313 LIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKG 372
Query: 207 KIPSRTSHDMLIKKL 221
P+ +++ L+ L
Sbjct: 373 CSPNTCTYNTLLHGL 387
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ M+ R EA E+ +K G++PD+ TY ++ G K GR +EA +LL E+G +
Sbjct: 282 YCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPD 341
Query: 158 VVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
VT + LL+ +EM G P T T+N ++ LC KA+ L
Sbjct: 342 EVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYG 401
Query: 201 LMYEHG 206
M G
Sbjct: 402 AMKSDG 407
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 40/162 (24%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYT-----------------------YTAIMDGFCKVGRS 139
RV++A E++ + + PD+Y+ YT ++D C
Sbjct: 194 RVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYPNLVTYTILIDNVCNTKNL 253
Query: 140 NEAMELLNEAIERGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNV 182
EA L++ E G + I++ R+ E G P IT+N +
Sbjct: 254 REATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTL 313
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
I L G++ +A LL +M E G P ++ L+ + ++
Sbjct: 314 IFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRK 355
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A E+ +K+DGLK D+ +Y + C VGR +A E+ + A+E +V L
Sbjct: 394 DKAMELYGAMKSDGLKLDMASYATFVRALCSVGRVADAYEVFDYAVESKSLSDVAAYSTL 453
Query: 165 LQRLE 169
L+
Sbjct: 454 ESTLK 458
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L+E I N + + G ++ FN L++AL N R+EEA
Sbjct: 337 KNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGN----------------RLEEAL 380
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ V GL PDVYT+ +++ CKVG A+ L E G T
Sbjct: 381 DLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCT------------- 427
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +I LC +GK+ KAL LL M G S +++ +I L
Sbjct: 428 -----PDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGL 475
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+Q T F + G V A +++ + +G PDV+TY +++ CK G+ EA +L
Sbjct: 289 DQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 348
Query: 147 NEAIERGVTQNVVTLIQLL------QRLE-----------MGHIPRTITFNNVIQALCGV 189
N+ +ERG ++ T L+ RLE G P TFN +I ALC V
Sbjct: 349 NQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKV 408
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G AL L M G P +++ LI L
Sbjct: 409 GDPQLALRLFEEMKSSGCTPDEVTYNTLIDNL 440
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------------- 96
L+E +D+ + G + V FN L+ AL + + A++ F
Sbjct: 376 LEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNT 435
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
N +G++ +A ++L +++ G TY I+DG CK R EA E+ ++ +G
Sbjct: 436 LIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQG 495
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+++N +T L+ Q + G P IT+N+++ C G I KA
Sbjct: 496 ISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAA 555
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
+L M +G ++ LI L
Sbjct: 556 DILQTMTANGFEVDVVTYGTLINGL 580
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 18/128 (14%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + +GRVE+A + +G +PD TY ++G C+ G A+++++ ++
Sbjct: 261 LINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQE- 319
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
GH P T+N V+ LC G++ +A +L M E G +P T+
Sbjct: 320 -----------------GHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITT 362
Query: 214 HDMLIKKL 221
+ LI L
Sbjct: 363 FNTLIVAL 370
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
++ S +K +++ + + G V FN L+ AL ++ TAV
Sbjct: 161 VEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVL-------------- 206
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL--- 164
ML + + G+ PD T+T +M GF + G A+ + +E G + VT+ L
Sbjct: 207 --MLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLING 264
Query: 165 ---LQRLE--MGHI---------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L R+E +G+I P IT+N + LC G + AL ++ +M + G P
Sbjct: 265 YCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPD 324
Query: 211 RTSHDMLIKKL 221
++++++ L
Sbjct: 325 VFTYNIVVNCL 335
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR---------- 167
G+KPDV T+ +M C+ + A+ +L E GV + T L+Q
Sbjct: 180 GIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAA 239
Query: 168 -------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
LEMG P +T N +I C +G++ AL + +G P + +++ +
Sbjct: 240 LRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNG 299
Query: 221 LDQ 223
L Q
Sbjct: 300 LCQ 302
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 53/172 (30%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++A +++ + ++GL+P+ TY +I+ +CK G +A ++L G +VVT
Sbjct: 515 RIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYG 574
Query: 163 QLLQRL----------------------------------------------------EM 170
L+ L E+
Sbjct: 575 TLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEV 634
Query: 171 GHIPRTITFNNVIQALC-GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G P T+ V + LC G G I +A L M + G IP +S ML + L
Sbjct: 635 GEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGL 686
>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
Length = 773
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF + +V RV E E +++ G PDV TYT +++GFCK G +EA+ LL
Sbjct: 363 VDFFCQNGLVDRVIELLEQMLS---HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS 419
Query: 152 RGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHK 194
G N V+ +L Q ++ G P +TFN +I LC G + +
Sbjct: 420 CGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQ 479
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL M +G P S+ +I L +
Sbjct: 480 AIELLKQMLVNGCSPDLISYSTVIDGLGK 508
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G VE+A E+L + +G PD+ +Y+ ++DG K G++ EA+ELLN + +G++ N +
Sbjct: 475 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534
Query: 161 ---------------LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+IQ+ ++ I + +N VI +LC + +A+ M
Sbjct: 535 SSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVS 594
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G +P+ +++ MLIK L +
Sbjct: 595 NGCMPNESTYTMLIKGLASE 614
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA +L ++ + G KP+ +YT ++ G C GR +A EL+++ I++G N VT
Sbjct: 405 GLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTF 464
Query: 162 ----------------IQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+LL Q L G P I+++ VI L GK +AL LL +M
Sbjct: 465 NTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVN 524
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ + + L ++
Sbjct: 525 KGISPNTIIYSSIACALSRE 544
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G E +E+L + G PD+ Y I+DG CK G A E+LN G+ NVV
Sbjct: 265 GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCY 324
Query: 161 --------------------------------------------------LIQLL-QRLE 169
+I+LL Q L
Sbjct: 325 NTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLS 384
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P IT+ VI C G I +A++LL M G P+ S+ +++K L
Sbjct: 385 HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA +L + G + D+ +Y A++ G C R + EL++E + N+VT
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G P + +I +C G + A +L M
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPS 314
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P+ ++ ++K L
Sbjct: 315 YGLKPNVVCYNTVLKGL 331
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I +F++IK +N ++ +L E D A+ FF AY + +
Sbjct: 551 IQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF-----------AY-----MVS 594
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+G P+ TYT ++ G G + EA ELL+E RG
Sbjct: 595 NGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA +L + +G+KP V TY+ +MDG+C VG A ++ + ++ GV NV +
Sbjct: 234 GNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSY 293
Query: 162 IQLLQRL--------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM H +P T+T+N++I LC G+I AL L+ M+
Sbjct: 294 NIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHH 353
Query: 205 HGKIPSRTSHDMLIKKL 221
G+ ++ L+ L
Sbjct: 354 RGQPADVVTYTSLLDAL 370
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 36/183 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
K +KE ++ + K+G V ++ L+ ++ E A + F + +G
Sbjct: 232 KEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVY 291
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
RV+EA +L + + + PD TY +++DG CK GR A+ L+NE
Sbjct: 292 SYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEM 351
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
RG +VVT LL L E G P T+ +I LC G++
Sbjct: 352 HHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRL 411
Query: 193 HKA 195
A
Sbjct: 412 KNA 414
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 35/187 (18%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D + K+ + +++ N + G V + LL AL D A
Sbjct: 323 PDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATAL 382
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
F M +K G++P +YTYTA++DG CK GR A EL + +G
Sbjct: 383 F----------------MKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGC 426
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+V T+ +I LC G +AL + M ++G IP+ +
Sbjct: 427 CIDV------------------WTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTF 468
Query: 215 DMLIKKL 221
+++I+ L
Sbjct: 469 EIIIRSL 475
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EAY++ + G+ PD TYT ++ GFC +G+ A LL+E I + + V
Sbjct: 166 VNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNI 225
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L + G P +T++ ++ C VG++ A + M + G
Sbjct: 226 LINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMG 285
Query: 207 KIPSRTSHDMLIKKL 221
P+ S++++I L
Sbjct: 286 VNPNVYSYNIMINGL 300
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G A ++L +++ +P+V Y I+DG CK NEA +L +E RG+ + +T
Sbjct: 128 IGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAIT 187
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LL + + +I P +N +I ALC G + +A LL +M
Sbjct: 188 YTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMT 247
Query: 204 EHGKIPSRTSHDMLI 218
+ G P ++ L+
Sbjct: 248 KEGIKPGVVTYSTLM 262
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T ++G++ A+ +L + + P VY Y +++ CK G EA LL
Sbjct: 187 TYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVM 246
Query: 150 IERGVTQNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKI 192
+ G+ VVT L+ ++MG P ++N +I LC ++
Sbjct: 247 TKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRV 306
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A+ LL M +P +++ LI L
Sbjct: 307 DEAMNLLREMLHKNMVPDTVTYNSLIDGL 335
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G V+++ V G + D +Y +++G CK+G + A++LL +R NVV
Sbjct: 94 GEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMY 153
Query: 160 -TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T+I L + ++ G P IT+ +I C +G++ A LL M
Sbjct: 154 NTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMIL 213
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P +++LI L ++
Sbjct: 214 KNINPGVYIYNILINALCKE 233
>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
nodiflora]
Length = 431
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMHASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
+ PDVYTY+ +++G CK + ++A +L +E +E+G+ N VT L+
Sbjct: 208 VHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P +T+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 268 EIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLI 324
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD TYT ++DG CK G + A E I+ + + V
Sbjct: 296 GDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ +I C G + K LL M
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 416 DGHVPSVVTYNVLM 429
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
+KA E ++F ++K+ G +N ++ + + A + + G
Sbjct: 590 VKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTV 649
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
R++EAY + K++G+K +V Y++++DGF KVGR +EA ++ E
Sbjct: 650 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEE 709
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
+++G+T NV T LL L ++ P IT++ +I LC V K
Sbjct: 710 LMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRK 769
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+KA + M + G P+ ++ +I L
Sbjct: 770 FNKAFVFWQEMQKLGLKPNTITYTTMISGL 799
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 37/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
KA+ L E +++F ++++ +N ++M + D A G
Sbjct: 311 CKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSV 370
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
RVEEA + +K D + P+V TY ++D C+ G+ N A+E+ ++
Sbjct: 371 IAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDD 429
Query: 149 AIERGVTQNVVTLIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGK 191
G+ NV+T+ ++ RL P +TF+++I L G+
Sbjct: 430 MERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGR 489
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ A L M + G +P + LI+
Sbjct: 490 VDDAYSLYEKMLDCGHVPGAIVYTSLIRSF 519
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 88/213 (41%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
+K+ L+E DI +++K + S + L+ AL + E D + F
Sbjct: 171 VKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNV 230
Query: 98 HLMV---------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
HL GRV+ A +L +K++ L D+ Y +D F K G+ + + + +E
Sbjct: 231 HLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHE 290
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMGH-IPRTITFNNVIQALCGVGK 191
G+ + VT ++L ++LE +P +N +I GK
Sbjct: 291 MKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGK 350
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+A LL G IPS +++ ++ L ++
Sbjct: 351 FDEAYGLLERQKAKGSIPSVIAYNCILTCLGKK 383
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G E+ + + G PD +Y+ ++ G K G +NE EL E+G +
Sbjct: 558 GETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLD---- 613
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T +N VI C GK++KA LL M G P+ ++ +I L
Sbjct: 614 --------------THAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGL 659
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 42/219 (19%)
Query: 11 PFSVLLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNS 62
P +L+D R +L+++++ P L +D++ KA L+E IF
Sbjct: 405 PTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEG 464
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122
+ + F+ L+ L GRV++AY + + + G P
Sbjct: 465 MDDKVCTPNAVTFSSLIDGLGK----------------CGRVDDAYSLYEKMLDCGHVPG 508
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182
YT+++ F K GR + ++ E + G + + +TLI N
Sbjct: 509 AIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPD-LTLI-----------------NTY 550
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + G+ K L + HG IP S+ +LI L
Sbjct: 551 MDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGL 589
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
R +EA ++ +K G+ P V +YT+++ GFC G+ EA L NE + +GV NVVT
Sbjct: 257 REDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFN 316
Query: 161 -LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LI +L + ++ G +P +T+N++I+ C VG ++ A L M
Sbjct: 317 VLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSK 376
Query: 206 GKIPSRTSHDMLI 218
G P + +LI
Sbjct: 377 GCEPDVICYTVLI 389
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 33/186 (17%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E D+F +K G +V + L+ G+ EEA + +
Sbjct: 260 EARDLFEEMKVQGMTPTVISYTSLIHGFCC----------------GGKWEEAKRLFNEM 303
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM---- 170
N G++P+V T+ ++D CK G+ EA +LL I+RG+ N++T L++ +
Sbjct: 304 VNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDL 363
Query: 171 -------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
G P I + +I C K+ +A+ L M + GK P ++ L
Sbjct: 364 NSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGAL 423
Query: 218 IKKLDQ 223
+ L Q
Sbjct: 424 LTGLFQ 429
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
+A+R +++ ++ + FN + K+G D ++++ ++ T
Sbjct: 295 EAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLI 354
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+VG + A E+ +++ + G +PDV YT +++G+CK + EAM+L N ++ G
Sbjct: 355 EGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKR 414
Query: 156 QNVVTLIQLLQRLEMG 171
+V T LL L G
Sbjct: 415 PDVKTYGALLTGLFQG 430
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K S ++E + ++N + + G V + LL L + A K F
Sbjct: 394 KTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLY 453
Query: 97 ------NHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L G + EA E+ +K+ +K D+ + ++DG CK G+ A EL +
Sbjct: 454 IYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKL 513
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ + P +T+N +I C G++ KA +L M ++G P
Sbjct: 514 PQEELQ------------------PDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTP 555
Query: 210 SRTSHDMLIK 219
+ ++ LI+
Sbjct: 556 DKITYATLIR 565
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 23/129 (17%)
Query: 98 HLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
HL+ G + + + ++ G+ PD T +++ C V R E + ++ + R
Sbjct: 101 HLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRR 160
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
G +IP +T+ +I+ LC +I KA LL M + G P+
Sbjct: 161 G------------------YIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAI 202
Query: 213 SHDMLIKKL 221
++ L+K L
Sbjct: 203 TYGTLMKGL 211
Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 58/178 (32%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG---------------------- 137
M R+ +A + ++ G P+ TY +M G C+ G
Sbjct: 178 MEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGIN 237
Query: 138 -------------------RSNEAMELLNEAIERGVTQNVVTLIQLL------------Q 166
R +EA +L E +G+T V++ L+ +
Sbjct: 238 FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAK 297
Query: 167 RL--EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
RL EM G P +TFN +I LC GK+ +A LL +M + G +P+ +++ LI+
Sbjct: 298 RLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIE 355
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 23/141 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V RV E ++ + G PD+ TYT ++ G C R ++A L + G T N +T
Sbjct: 144 VNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAIT 203
Query: 161 LIQLLQRL-EMGHI----------------------PRTITFNNVIQALCGVGKIHKALL 197
L++ L G+I P I+++ +I ALC + +A
Sbjct: 204 YGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARD 263
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
L M G P+ S+ LI
Sbjct: 264 LFEEMKVQGMTPTVISYTSLI 284
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 37/194 (19%)
Query: 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
F K + + E +DIFN +++ G + +V ++ L+ AL L GR
Sbjct: 386 FCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKL----------------GR 429
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---- 159
V++A + N+G+ P++ +T+++ G C + + +A EL E + +G+ NVV
Sbjct: 430 VDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNT 489
Query: 160 ---------------TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L++R+ G P I++N +I+ C VGK +A LL +M
Sbjct: 490 IMCNLCTEGRVMKAQRLIDLMERV--GTRPDIISYNALIRGHCLVGKTDEASKLLDIMLS 547
Query: 205 HGKIPSRTSHDMLI 218
G P+ +++ L+
Sbjct: 548 VGLKPNECTYNTLL 561
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 20/142 (14%)
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
F+ M+G EA ++ ++ GL P+V Y ++D CK+GR ++A N+ I GV
Sbjct: 389 FAKKAMIG---EAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGV 445
Query: 155 TQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALL 197
N+V L+ L EM G P + FN ++ LC G++ KA
Sbjct: 446 APNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQR 505
Query: 198 LLFLMYEHGKIPSRTSHDMLIK 219
L+ LM G P S++ LI+
Sbjct: 506 LIDLMERVGTRPDIISYNALIR 527
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G+V++AY + +++ + G+ P+V TYT ++DG CK + A + + I++GV N+VT
Sbjct: 218 GQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTY 277
Query: 161 ---------------LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++++L+ + G P T+ ++ LC GK +A L M
Sbjct: 278 TCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIR 337
Query: 205 HGKIPSRTSHDMLI 218
G P + + +++
Sbjct: 338 KGIKPDVSIYGIIL 351
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 49/193 (25%)
Query: 31 DLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90
+L R ++AQR +D L ER+ GT + +N L+
Sbjct: 493 NLCTEGRVMKAQRLID------LMERV---------GTRPDIISYNALI----------- 526
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
H +VG+ +EA ++L + + GLKP+ TY ++ G+C+ GR ++A + E +
Sbjct: 527 -----RGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEML 581
Query: 151 ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
G+T P +T+N ++ L + +A L M GK S
Sbjct: 582 SNGIT------------------PVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWS 623
Query: 211 RTSHDMLIKKLDQ 223
++++++ L +
Sbjct: 624 IYTYNIILNGLSK 636
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T +L +G+ +E ML + GL+PD +TY ++D CK G+ EA +L +
Sbjct: 276 TYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSM 335
Query: 150 IERGVTQNVVTLIQLLQRL-------EM----------GHIPRTITFNNVIQALCGVGKI 192
I +G+ +V +L EM G P FN V A I
Sbjct: 336 IRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMI 395
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A+ + M + G P+ ++ LI L
Sbjct: 396 GEAMDIFNKMRQQGLSPNVVNYATLIDAL 424
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 103 RVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
RV EA +L+ ++ G P+V +Y ++ GFC R+ EA+ELL+ + V
Sbjct: 145 RVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCP--- 201
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +++N VI G++ KA L M + G P+ ++ ++I L
Sbjct: 202 ------------PNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGL 249
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
K E +++ ++ G WS+ +N +L L N D A+K F +
Sbjct: 600 FKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDI 659
Query: 98 ---HLMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++M+G R E+A + + +GL PDV TY I + + G E + +E
Sbjct: 660 ITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSE 719
Query: 149 AIERGVTQNVVTLIQLLQRLEM-GHIPRTITF 179
+ G N + L L++RL + G I R +
Sbjct: 720 MEKSGCAPNSLMLNFLVRRLLLRGDISRAGAY 751
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 20/142 (14%)
Query: 103 RVEEAYEMLMNVKNDGLK---PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
R EEA E+L + + ++ P++ +Y +++GF G+ ++A L + ++G+ NVV
Sbjct: 181 RAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVV 240
Query: 160 TLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ Q ++ G P +T+ +I +G+ + + +L M
Sbjct: 241 TYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEM 300
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
HG P ++ +L+ L ++
Sbjct: 301 SAHGLEPDCFTYGLLLDYLCKK 322
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 24/123 (19%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ--------------- 163
+ PDV+TY+ ++ FC++GR ++ G N V ++
Sbjct: 90 VAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEA 149
Query: 164 ---LLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI----PSRTSHD 215
LL+R+ E+G P +++N +++ C + +AL LL +M + G++ P+ S++
Sbjct: 150 MGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMAD-GQVRSCPPNLVSYN 208
Query: 216 MLI 218
+I
Sbjct: 209 TVI 211
>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
Length = 457
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 22/143 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR +EA ++ + G +PDV TY+++++G CK G+ EA+E + E G N VT
Sbjct: 306 LGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVT 365
Query: 161 LIQLLQRL--------------EMG-------HIPRTI-TFNNVIQALCGVGKIHKALLL 198
L+ L EM H P ++ T+N +I LC G+I AL
Sbjct: 366 YCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKF 425
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
M G P S+ +++ L
Sbjct: 426 FQRMRSQGCDPDGVSYSTIVEGL 448
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S + G+VEE+ E+L V + GL+PD YT +M CK R EA+ELL E
Sbjct: 84 TYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEM 143
Query: 150 IERGVTQNVVTLIQLL------QRLEM-----------GHIPRTITFNNVIQALCGVGKI 192
I G ++T L+ + LEM G +T+N ++ LC G++
Sbjct: 144 IRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRL 203
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A LL M G P ++ + L
Sbjct: 204 QEAEQLLERMKASGCAPDVVAYSSFVYGL 232
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 35/182 (19%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ ++ G +V +N LL L L R EA E++ ++ + G
Sbjct: 32 LLETMAARGIQPNVVSYNGLLEGLCKLE----------------RWHEAEELVRDMISRG 75
Query: 119 LK--PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------- 168
+ PD+ TY+ ++ G+CK G+ E+ ELL E I RG+ + + +++ L
Sbjct: 76 GRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGE 135
Query: 169 ---------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G P ITFN +I C + A LL M G +++ L+
Sbjct: 136 ALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMD 195
Query: 220 KL 221
L
Sbjct: 196 GL 197
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 18/102 (17%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++EA ++L +K G PDV Y++ + G CK G+ A ++L
Sbjct: 200 AGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLE------------- 246
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
Q + H P +T+N ++ LC GKI AL ++ M
Sbjct: 247 -----QMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQM 283
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQRLEMGH-- 172
G P+ T+ A+++GF K GR + LL RG+ NVV+ L++ L +LE H
Sbjct: 5 GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEA 64
Query: 173 --------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
P +T++ ++ C GK+ ++ LL + G P
Sbjct: 65 EELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRP 115
>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
Length = 644
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF + +V RV E E +++ G PDV TYT +++GFCK G +EA+ LL
Sbjct: 363 VDFFCQNGLVDRVIELLEQMLS---HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS 419
Query: 152 RGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHK 194
G N V+ +L Q ++ G P +TFN +I LC G + +
Sbjct: 420 CGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQ 479
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL M +G P S+ +I L +
Sbjct: 480 AIELLKQMLVNGCSPDLISYSTVIDGLGK 508
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G VE+A E+L + +G PD+ +Y+ ++DG K G++ EA+ELLN + +G++ N +
Sbjct: 475 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534
Query: 161 ---------------LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+IQ+ ++ I + +N VI +LC + +A+ M
Sbjct: 535 SSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVS 594
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G +P+ +++ MLIK L +
Sbjct: 595 NGCMPNESTYTMLIKGLASE 614
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA +L ++ + G KP+ +YT ++ G C GR +A EL+++ I++G N VT
Sbjct: 405 GLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTF 464
Query: 162 ----------------IQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+LL Q L G P I+++ VI L GK +AL LL +M
Sbjct: 465 NTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVN 524
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ + + L ++
Sbjct: 525 KGISPNTIIYSSIACALSRE 544
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G E +E+L + G PD+ Y I+DG CK G A E+LN G+ NVV
Sbjct: 265 GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCY 324
Query: 161 --------------------------------------------------LIQLL-QRLE 169
+I+LL Q L
Sbjct: 325 NTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLS 384
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P IT+ VI C G I +A++LL M G P+ S+ +++K L
Sbjct: 385 HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA +L + G + D+ +Y A++ G C R + EL++E + N+VT
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G P + +I +C G + A +L M
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPS 314
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P+ ++ ++K L
Sbjct: 315 YGLKPNVVCYNTVLKGL 331
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I +F++IK +N ++ +L E D A+ FF AY + +
Sbjct: 551 IQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF-----------AYMV-----S 594
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+G P+ TYT ++ G G + EA ELL+E RG
Sbjct: 595 NGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631
>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
Length = 644
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF + +V RV E E +++ G PDV TYT +++GFCK G +EA+ LL
Sbjct: 363 VDFFCQNGLVDRVIELLEQMLS---HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS 419
Query: 152 RGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHK 194
G N V+ +L Q ++ G P +TFN +I LC G + +
Sbjct: 420 CGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQ 479
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL M +G P S+ +I L +
Sbjct: 480 AIELLKQMLVNGCSPDLISYSTVIDGLGK 508
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G VE+A E+L + +G PD+ +Y+ ++DG K G++ EA+ELLN + +G++ N +
Sbjct: 475 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534
Query: 161 ---------------LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+IQ+ ++ I + +N VI +LC + +A+ M
Sbjct: 535 SSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVS 594
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G +P+ +++ MLIK L +
Sbjct: 595 NGCMPNESTYTMLIKGLASE 614
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA +L ++ + G KP+ +YT ++ G C GR +A EL+++ I++G N VT
Sbjct: 405 GLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTF 464
Query: 162 ----------------IQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+LL Q L G P I+++ VI L GK +AL LL +M
Sbjct: 465 NTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVN 524
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ + + L ++
Sbjct: 525 KGISPNTIIYSSIACALSRE 544
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 64/172 (37%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G E +E+L + G PD+ Y I+DG CK G A E+LN G+ NVV
Sbjct: 265 GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCY 324
Query: 161 --------------------------------------------------LIQLL-QRLE 169
+I+LL Q L
Sbjct: 325 NTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLS 384
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P IT+ VI C G I +A++LL M G P+ S+ +++K L
Sbjct: 385 HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA +L + G + D+ +Y A++ G C R + EL++E + N+VT
Sbjct: 195 GCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G P + +I +C G + A +L M
Sbjct: 255 NTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPS 314
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P+ ++ ++K L
Sbjct: 315 YGLKPNVVCYNTVLKGL 331
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I +F++IK +N ++ +L E D A+ FF AY + +
Sbjct: 551 IQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF-----------AYMV-----S 594
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+G P+ TYT ++ G G + EA ELL+E RG
Sbjct: 595 NGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A ++ + +G PD+ TY I+DG C ++AMELL++ G ++VT
Sbjct: 510 GLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTF 569
Query: 162 IQLLQ------RLE-----MGHI------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+ R E M ++ P +TFN VI +LC G + +A+ L +M E
Sbjct: 570 NTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAE 629
Query: 205 HGKIPSRTSHDMLIKKL 221
+G +P+ +++ +++ L
Sbjct: 630 NGCVPNSSTYSIVVDAL 646
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K S ++ + + + ++ G + +N L+ A M NE D V+EA
Sbjct: 297 CKESGYRQAMALLDEMRAKGCEPDIVTYNVLINA--MCNEGD--------------VDEA 340
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+L N+ + G KPD TYT ++ C R E ELL E + VT ++
Sbjct: 341 LNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTS 400
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L E G + +T+++++ LC VG++ A+ LL + +G P
Sbjct: 401 LCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPD 460
Query: 211 RTSHDMLIKKL 221
++ ++K L
Sbjct: 461 TIAYTTVLKGL 471
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A E++ ++ G D+ TY++I+DG C VGR ++A+ELL+ G + +
Sbjct: 405 GLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 464
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L+ L EM P +TFN V+ +LC G + +A+ ++ M E
Sbjct: 465 TTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSE 524
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P +++ +I L
Sbjct: 525 NGCSPDIVTYNCIIDGL 541
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 25/200 (12%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQDTAVKFFSNH 98
+A R V+++ + I +N I N S + D +LL L + V F N
Sbjct: 514 RAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTF--NT 571
Query: 99 LMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L+ G R E+A +++ N+ PD T+ ++ C+ G +A+E L E G
Sbjct: 572 LLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENG 631
Query: 154 VTQNVVTL----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
N T ++LL + G P IT+N VI L GK+ +AL
Sbjct: 632 CVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG-TPDLITYNTVISNLTKAGKMEEALD 690
Query: 198 LLFLMYEHGKIPSRTSHDML 217
LL +M +G P T++ L
Sbjct: 691 LLRVMVSNGLCPDTTTYRSL 710
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ +A + ++ + G P V TY+ ++D CK +AM LL+E +G
Sbjct: 265 GRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCE------ 318
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +I A+C G + +AL +L + HG P ++ ++K L
Sbjct: 319 ------------PDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSL 366
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 24/117 (20%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A + + G V TY +++G+C+ GR +A L+N
Sbjct: 201 GRVSDAERVFAAL---GPSATVVTYNTMVNGYCRAGRIEDARRLING------------- 244
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
M P T TFN +I+ALC G+I AL + M G PS ++ +L+
Sbjct: 245 --------MPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILL 293
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 18/149 (12%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA ++E +D+ + +G + + L + + D AV+
Sbjct: 681 KAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVR--------------- 725
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
ML V++ GL PD Y ++ GFC+ R++ A++ + G + T + LL+ L
Sbjct: 726 -MLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEAL 784
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALL 197
G + ++ +LC +G + K L+
Sbjct: 785 AYGGL--LDEAKRLLASLCSLGVLDKKLI 811
>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g09680-like [Glycine max]
Length = 509
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+ I K G +V FN L+ S G VEE + + ++++
Sbjct: 164 VFDEIPKRGLRPTVVSFNTLI----------------SGCCKAGAVEEGFRLKGVMESER 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR----------- 167
+ PDV+T++A+++G CK GR +E L +E +G+ N VT L+
Sbjct: 208 VCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLAL 267
Query: 168 ------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L G P +T+N +I LC VG + +A L+ M G P R + LI
Sbjct: 268 KNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLI 324
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 42/200 (21%)
Query: 31 DLKENPRSLQAQRFVDKIKASPLK-ERIDIFNSIKKDGTNWSVSDFNDLLMAL----VML 85
DLKE A+R V+++ AS L+ +RI I DG + D+ AL M+
Sbjct: 297 DLKE------ARRLVNEMSASGLRPDRITFTTLI--DGC----CKYGDMESALEIKRRMV 344
Query: 86 NE----QDTAVKFFSNHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN 140
E D A + L GRV +A ML ++ + G KPD TYT ++D FCK G
Sbjct: 345 EEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKG--- 401
Query: 141 EAMELLNEAIERGVTQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLL 199
NV +LL+ ++ GH+P +T+N ++ LC G++ A +LL
Sbjct: 402 ----------------NVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLL 445
Query: 200 FLMYEHGKIPSRTSHDMLIK 219
M G P+ ++++L++
Sbjct: 446 DAMLNVGVAPNDITYNILLE 465
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG ++EA ++ + GL+PD T+T ++DG CK G A+E+ +E G+ + V
Sbjct: 295 VGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVA 354
Query: 161 ---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI L R L G P T+ V+ C G + LL M
Sbjct: 355 FTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQ 414
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G +P +++ L+ L +Q
Sbjct: 415 SDGHVPGVVTYNALMNGLCKQ 435
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E ++ + V + G P+ + + +M GFCKVG A + +E +RG+ VV+
Sbjct: 123 LERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNT 182
Query: 164 LLQ------RLEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ +E G P TF+ +I LC G++ + LL M G
Sbjct: 183 LISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKG 242
Query: 207 KIPSRTSHDMLI 218
+P+ + +LI
Sbjct: 243 LVPNGVTFTVLI 254
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 22/150 (14%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
FF N LM VG V A + + GL+P V ++ ++ G CK G E L
Sbjct: 143 FFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGV 202
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
V +V T L+ L EM G +P +TF +I C GK
Sbjct: 203 MESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGK 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ AL +M G P +++ LI L
Sbjct: 263 VDLALKNFQMMLAQGVRPDLVTYNALINGL 292
>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA ++ ++ +G KPD + Y IM G+C + R +EA+E+ N E+GV +++T
Sbjct: 250 LREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNT 309
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L E GH P +T+ +++ +C G+ AL LL M G
Sbjct: 310 LIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKG 369
Query: 207 KIPSRTSHDMLIKKL 221
P+ +++ L+ L
Sbjct: 370 CSPNTCTYNTLLHGL 384
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ M+ R EA E+ +K G++PD+ TY ++ G K GR +EA +LL E+G +
Sbjct: 279 YCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPD 338
Query: 158 VVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
VT + LL+ +EM G P T T+N ++ LC KA+ L
Sbjct: 339 EVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAMELYG 398
Query: 201 LMYEHG 206
M G
Sbjct: 399 AMKSDG 404
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A E+ +K+DGLK D+ +Y + C VGR +A E+ + A+E +V L
Sbjct: 391 DKAMELYGAMKSDGLKLDMASYATFVRALCSVGRVADAYEVFDYAVESKSLSDVAAYSTL 450
Query: 165 LQRLE 169
L+
Sbjct: 451 ESTLK 455
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVVTL 161
RV++A E++ + + PD+Y+Y ++ CK + ++E + V N+VT
Sbjct: 178 RVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYAFIDEMRTKFDVKPNLVTY 237
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + E G P +N +++ C + + +A+ + M E
Sbjct: 238 TILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKE 297
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P +++ LI L +
Sbjct: 298 KGVEPDLITYNTLIFGLSKS 317
>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 412
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 17/148 (11%)
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
A+ + N G V+EA +L + G+ P+ TY+++MDG+C V N A + +
Sbjct: 138 ALPLWYNANNEGNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMS 197
Query: 151 ERGVTQNVVT---LIQLLQRLEMGH--------------IPRTITFNNVIQALCGVGKIH 193
RGVT NV + +I +++M IP +T+N++I LC GKI
Sbjct: 198 LRGVTANVWSYNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKIS 257
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKL 221
AL L+ M++ G+ P ++ L+ L
Sbjct: 258 YALKLVDEMHDRGQPPDIITYSSLLDAL 285
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 22/121 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVVT 160
+V++A +L N+K+ G++P++YTYT ++DG CK GR +A + + + +G +T N T
Sbjct: 290 QVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYT 349
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
++ I C G +AL LL M ++ P+ +++++I+
Sbjct: 350 VM--------------------IHGFCNKGLFDEALALLSKMKDNSCFPNALTYEIIIRS 389
Query: 221 L 221
L
Sbjct: 390 L 390
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------- 102
+KE ++ + K G N + ++ L+ ++NE + A FS + G
Sbjct: 151 VKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNI 210
Query: 103 ---------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+EA + + L PDV TY ++++G CK G+ + A++L++E +R
Sbjct: 211 MINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDR- 269
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
G P IT+++++ ALC ++ KA+ LL + + G P+ +
Sbjct: 270 -----------------GQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYT 312
Query: 214 HDMLIKKL 221
+ +LI L
Sbjct: 313 YTILIDGL 320
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EEA + + G KP++ Y+ ++DG C+ G+ NEA E+LN I G N T
Sbjct: 376 GKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTY 435
Query: 162 ----------------IQLLQRLEMGHIPRT-ITFNNVIQALCGVGKIHKALLLLFLMYE 204
+Q+ + ++ R ++ +I LCGVG++ +A+++ M
Sbjct: 436 SSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLT 495
Query: 205 HGKIPSRTSHDMLIKKL 221
G P ++ +IK L
Sbjct: 496 IGIKPDTVAYSSIIKGL 512
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+ A E+ + PD YTY +MDG CK R +EA+ LL+E G + + V
Sbjct: 203 VDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNV 262
Query: 164 LLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L G +P +T+N +I LC GK+ KA+ LL M
Sbjct: 263 LIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK 322
Query: 207 KIPSRTSHDMLIKKLDQQ 224
IP+ ++ LI L +Q
Sbjct: 323 CIPNDVTYGTLINGLVKQ 340
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRV+EA + + G+KPD Y++I+ G C +G + A++L +E
Sbjct: 480 VGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHE------------ 527
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+L + E P +T+N ++ LC I +A+ LL M + G P + + +
Sbjct: 528 ---MLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNT 584
Query: 221 LDQQ 224
L ++
Sbjct: 585 LSEK 588
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVV 159
G++++A +L + + P+ TY +++G K R+ +A+ LL+ ERG + Q++
Sbjct: 306 GKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIY 365
Query: 160 TLI--------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++ L +++ E G P + ++ ++ LC GK ++A +L M
Sbjct: 366 SVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIA 425
Query: 205 HGKIPSRTSHDMLIK 219
G +P+ ++ L+K
Sbjct: 426 SGCLPNAYTYSSLMK 440
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+ E A E++ ++ G KP+++TY ++D K G+ +EA+ LL E + G +V T
Sbjct: 57 AGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRT 116
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E G +P T T+N++I L VG+ KA+ LL M
Sbjct: 117 YNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEME 176
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
HG P ++ LI L +
Sbjct: 177 RHGCPPDVMTYSSLITGLGK 196
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 36/211 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN--------HLM 100
KA L E +F +++ G +N L+ L + A++ +M
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185
Query: 101 V-----------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G +A+++ +K G KPD T+TA+MD K GR ++A+ELL+E
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM 245
Query: 150 IERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKI 192
ERGV VVT L+ EM G P +T++ +I L ++
Sbjct: 246 KERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQL 305
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+A +L M + G P +++ LI L +
Sbjct: 306 DEACQVLKKMEKEGCPPDTITYNTLINGLGK 336
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 37/192 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------------- 94
+ KE IF +K+ G V+ ++ LL+ L E D A
Sbjct: 441 RGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSL 500
Query: 95 -FSNHLMV----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
F L + G V+EA+E+L + GL P +Y A++D K GR +EA L +
Sbjct: 501 KFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDL 560
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
E+ G P ++++++I AL G+I A LL M + G
Sbjct: 561 KEQ------------------GGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKL 602
Query: 210 SRTSHDMLIKKL 221
S S+ L++KL
Sbjct: 603 SPRSYSNLVRKL 614
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +EA ++ ++K GL PDV TY A++ G K ++A LL E IE+G + +
Sbjct: 443 GRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKF 502
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L+ L G P ++N +I AL G++ +A L + E
Sbjct: 503 DECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKE 562
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G P S+ LI L Q
Sbjct: 563 QGGKPDIVSYSSLISALGQ 581
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
KA L + +F+ +K G N V ++ L+ AL ++A F VG
Sbjct: 336 KAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLF 395
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+V++A + ++ GL PDV TY A ++ + GR EA ++ +
Sbjct: 396 TYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDM 455
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
E G+ +V T LL + +E G ++ F+ ++ L G +
Sbjct: 456 KESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNV 515
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A LL G P +S++ LI L
Sbjct: 516 DEAHELLQFANSKGLWPGASSYNALIDAL 544
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+ EEA + +K PDV +Y+ +++ + G+ A+E++ E +G N+ T
Sbjct: 22 AGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWT 81
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L EM G +P T+N +I L G++ +A L M
Sbjct: 82 YNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMR 141
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
E G +P +++ LI L +
Sbjct: 142 ERGCVPDTFTYNSLIYGLGK 161
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 37/195 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
IKAS L E + ++K+G +N L+ L + A + F G
Sbjct: 300 IKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDV 359
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
RVE A + +++ G++PD++TY +I+ K G+ ++A L +E
Sbjct: 360 VTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSE 419
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+G++ P IT+N + +L G+ +A + M E G +
Sbjct: 420 MRGKGLS------------------PDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLL 461
Query: 209 PSRTSHDMLIKKLDQ 223
P ++D L+ L +
Sbjct: 462 PDVATYDALLLGLSK 476
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 33/192 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L E ++ + +K++G V ++ L+ L+ ++ D EA
Sbjct: 266 KVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLD----------------EAC 309
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++L ++ +G PD TY +++G K G N+A L + +G +VVT L+ L
Sbjct: 310 QVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITAL 369
Query: 169 -----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+G P T+ ++I L G++ A L M G P
Sbjct: 370 GKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDV 429
Query: 212 TSHDMLIKKLDQ 223
+++ + L +
Sbjct: 430 ITYNAFLNSLGR 441
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV EA+ L ++K G KPD+ +Y++++ + G+ + A ELL E +RG+ + +
Sbjct: 547 AGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRS 606
Query: 161 LIQLLQRLE 169
L+++L+
Sbjct: 607 YSNLVRKLQ 615
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------------ 168
P+V TY ++++ K G+ EA L E T +VV+ L+ L
Sbjct: 7 PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66
Query: 169 --EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
EM G P T+N ++ L G+ +AL LL M ++G +P +++ LI L +
Sbjct: 67 VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 39/203 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------HLM-- 100
L +IFN + ++G + + ++ L+ L + A+ F S H
Sbjct: 279 LDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTA 338
Query: 101 -------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+GR+E+A+++ +++K G KP+VYTYT+++ G +V R A+ L + G
Sbjct: 339 PIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQ-RVSRM--AIGLFHRMSRDG 395
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
V N VT L+ L + G +P T ++N +I+ C +G KA+
Sbjct: 396 VVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAM 455
Query: 197 LLLFLMYEHGKIPSRTSHDMLIK 219
+L M + P+ +++++IK
Sbjct: 456 SMLTNMLKGRPTPTLVTYNIIIK 478
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 71/237 (29%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------------------ 100
+FN + K G + S +N+L+ + + + A+ +N L
Sbjct: 422 VFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYC 481
Query: 101 -VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G + A +L +K +G +PD ++YT ++ GFCK+ + A + NE ++RG+ N V
Sbjct: 482 DSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEV 541
Query: 160 TLIQL----------------LQRLEMGHI------------------------------ 173
T L L+R++
Sbjct: 542 TYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM 601
Query: 174 ------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
P +T++ VI LC G I AL + M +HG +P+ ++ LI+ L Q+
Sbjct: 602 LEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQE 658
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +A ++ V G+KPD +TYT+++ G+C+ + A E+ N E G N T
Sbjct: 242 GNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATY 301
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G +P TF I ALC +G+I A + M +
Sbjct: 302 STLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKK 361
Query: 205 HGKIPSRTSHDMLI 218
G P+ ++ LI
Sbjct: 362 KGCKPNVYTYTSLI 375
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 33/183 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +K+ G +V +N L+ L N FS EE ++++ K
Sbjct: 562 MLERMKRSGCRPNVQTYNVLIHGLTKQNN-------FSG------AEELCKVMLEEK--- 605
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
+ PDV TY+ +++G C G A+E+ N+ ++ G N+ T L+Q L
Sbjct: 606 ISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAE 665
Query: 169 -------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G IP +T+ +I+ GK+ +A L M G P+ ++D+LIK L
Sbjct: 666 EMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL 725
Query: 222 DQQ 224
+
Sbjct: 726 QNE 728
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 20/128 (15%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M V + Y ++ +GL+P++ Y ++++ CK G +A ++N+ + G+ +
Sbjct: 208 MTSTVMDRYHQILR---EGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTF 264
Query: 160 TL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ R+ E G P T++ +I LC G++++AL + M
Sbjct: 265 TYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEM 324
Query: 203 YEHGKIPS 210
HG +P+
Sbjct: 325 TRHGVLPT 332
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+++FN + K G ++ ++ L+ AL Q+ GRVEEA EM +K
Sbjct: 630 LEMFNKMVKHGCLPNLHTYSSLIQAL----GQE------------GRVEEAEEMFSELKK 673
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
GL PD TY +++ G+ + A + L E I G + T L++ L+
Sbjct: 674 QGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQ 726
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EAYE+L + ++G PDV TYT ++D C + + A E+ + + VT
Sbjct: 274 GKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTY 333
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I LL R EM GH+P +TF ++ ALC G +A L +M +
Sbjct: 334 ITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRD 393
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ +++ LI L
Sbjct: 394 QGILPNLHTYNTLICGL 410
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 37/189 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
KA +E IF +K G +N ++ + E D A+K S
Sbjct: 482 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVI 541
Query: 97 --NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ RV+EA++M M +K LKP V TY ++ G K G+ EA+EL
Sbjct: 542 VVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM 601
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+++G P TITFN + LC ++ AL +LF M + G +P
Sbjct: 602 VQKGCP------------------PNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVP 643
Query: 210 SRTSHDMLI 218
+++ +I
Sbjct: 644 DVFTYNTII 652
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 85/221 (38%), Gaps = 38/221 (17%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
+P + +D + K+ L E +F + G + + +N L+ E D A
Sbjct: 890 SPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACA 949
Query: 94 FFSNHL-------------------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F + MVGRV+E +K GL PDV Y I++G
Sbjct: 950 LFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLG 1009
Query: 135 KVGRSNEAMELLNEAIE-RGVTQNVVTLIQLLQRL-------EMGHI----------PRT 176
K R EA+ L NE + RG+T ++ T L+ L E G I P
Sbjct: 1010 KFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNV 1069
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
TFN +I+ GK A + M G P+ +++ L
Sbjct: 1070 FTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L V R+++A E+ N+++ G+KP YTY +D + K G S A+E + +G+ N+
Sbjct: 411 LRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNI 470
Query: 159 VTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
V L L ++G +P ++T+N +++ VG+I +A+ LL
Sbjct: 471 VACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSE 530
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M E+ P + LI L
Sbjct: 531 MVENCCEPDVIVVNSLINTL 550
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA ++ + + G +P+ Y +++GF K G ++ A L ++ GV
Sbjct: 907 GRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR------ 960
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T++ ++ LC VG++ + L + E G P ++++I L
Sbjct: 961 ------------PDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGL 1008
Query: 222 DQ 223
+
Sbjct: 1009 GK 1010
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E A ++ + VKN G PDV TY ++D + K G+ +E E+ E
Sbjct: 803 IEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECE-------- 854
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF-LMYEHGKIPSRTSHDMLIKKLD 222
P TIT N VI L G + AL L + LM + P+ ++ LI L
Sbjct: 855 ----------PNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS 904
Query: 223 QQ 224
+
Sbjct: 905 KS 906
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 20/133 (15%)
Query: 55 ERIDIFNSIKKDGTNWSV----------SDFNDLLMALVMLNEQD----------TAVKF 94
E + F +K+ G N V F+ L ALV+ NE T
Sbjct: 981 EGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSL 1040
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
N + G VEEA ++ ++ GL+P+V+T+ A++ G+ G+ A + + G
Sbjct: 1041 ILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGF 1100
Query: 155 TQNVVTLIQLLQR 167
+ N T QL R
Sbjct: 1101 SPNTGTYEQLPNR 1113
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G EA+ L +++ G+ P+++TY ++ G +V R ++A+E+ + GV T
Sbjct: 379 GNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTY 438
Query: 162 IQL-------------LQRLE----MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L+ E G P + N + +L G+ +A + + + +
Sbjct: 439 IVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKD 498
Query: 205 HGKIPSRTSHDMLIK 219
G +P +++M++K
Sbjct: 499 IGLVPDSVTYNMMMK 513
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K ++E I++F + + G + FN L L +E A+K
Sbjct: 587 KNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALK--------------- 631
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
ML + + G PDV+TY I+ G K G+ EAM ++ +++ V + VTL LL
Sbjct: 632 -MLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQ-MKKLVYPDFVTLCTLL 686
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +++ DG ++ DL+ ++ + +T + F + G + +A L ++ G
Sbjct: 126 MLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFG 185
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----------------TQNVVTLI 162
+ Y+Y ++ K EAME+ I G +++ +++
Sbjct: 186 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVM 245
Query: 163 QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LL+ +E +G P TF I+ L GKI++A +L M + G P ++ +LI L
Sbjct: 246 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 305
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 22/147 (14%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N LM G +V+EA + L + N G PD +TY I+DG+CK G EA ELL +A+
Sbjct: 284 NTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVF 343
Query: 152 RGVTQNVVTLIQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGKIHK 194
+G + VT L+ L G I R + +N++++ LC G I
Sbjct: 344 KGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILH 403
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
AL ++ M E G P +++++I L
Sbjct: 404 ALQVMNEMVEEGCHPDIWTYNIIINGL 430
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A +++ + +G PD++TY I++G CK+G ++A ++N+AI +G +V T
Sbjct: 399 GLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTF 458
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+QL++R+ G P IT+N+V+ LC GK + M
Sbjct: 459 NTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMIL 518
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ ++++LI+
Sbjct: 519 KGCRPNAITYNILIENF 535
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G +E A E+ + LKPD+ Y +++ G C+ G A++++NE +E G ++ T
Sbjct: 364 GDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTY 423
Query: 161 --LIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+I L ++ G++P TFN +I C K+ AL L+ M+
Sbjct: 424 NIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWT 483
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P +++ ++ L
Sbjct: 484 YGIAPDVITYNSVLNGL 500
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 31/205 (15%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE---QDTAVKFFS 96
+A ++ +A LK + ++NS+ K + +L AL ++NE + ++
Sbjct: 368 RALELFNEAQAKDLKPDLVVYNSLVKGLCRQGL-----ILHALQVMNEMVEEGCHPDIWT 422
Query: 97 NHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
++++ G + +A ++ + G PDV+T+ ++DG+CK + + A++L+
Sbjct: 423 YNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMW 482
Query: 151 ERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIH 193
G+ +V+T +L L EM G P IT+N +I+ C + ++
Sbjct: 483 TYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLE 542
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLI 218
+A ++ M + G +P S + LI
Sbjct: 543 EASGVIVRMCQDGLVPDAVSFNTLI 567
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G ++EA E+L + G PD TY ++++G C G A+EL NEA + + ++V
Sbjct: 329 GMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVY 388
Query: 160 -TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L++ L R +E G P T+N +I LC +G I A +++
Sbjct: 389 NSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIV 448
Query: 205 HGKIPSRTSHDMLI 218
G +P + + LI
Sbjct: 449 KGYLPDVFTFNTLI 462
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L+ +D F + + +N ++ ALV D A K + L G
Sbjct: 83 RAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAG------ 136
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ PD T+T + FC GR + A+ LL ERG +++ L
Sbjct: 137 ----------VAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGL 186
Query: 169 -EMGH----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
GH P TFNNV+ ALC G + ++ LL + + G ++
Sbjct: 187 YAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANK 246
Query: 212 TSHDMLIKKL 221
+ ++ I+ L
Sbjct: 247 FTCNIWIRGL 256
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
K + L+E + + +DG FN L+ + D A F
Sbjct: 536 CKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATA 595
Query: 98 ---HLMVGRVEEAYEMLMNVK------NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++++G M M K + G KPD+YTY ++DG CK + A L E
Sbjct: 596 DTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAE 655
Query: 149 AIERGVTQNVVTLIQLLQRLEMGH 172
I +G ++ T ++L L M H
Sbjct: 656 MISKGFVPSMATFGRMLNLLAMNH 679
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
+ N + K G + N+ +++ + A+ + N + ++EEA +++ +
Sbjct: 496 VLNGLCKAG---KAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMC 552
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------------IQ 163
DGL PD ++ ++ GFC+ G + A L + E+G + T +Q
Sbjct: 553 QDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQ 612
Query: 164 LLQRL--EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +++ EM G+ P T+ ++ LC + +A L M G +PS + ++
Sbjct: 613 MAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRML 672
Query: 219 KKL 221
L
Sbjct: 673 NLL 675
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQL 164
PDV T+ ++ C+ G E+ LL + ++RG++ N T + L
Sbjct: 209 PDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL 268
Query: 165 LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++R+ P +T+N +++ LC K+ +A L M G IP +++ +I
Sbjct: 269 VERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTII 322
>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 482
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 40/234 (17%)
Query: 25 SAAESLDLKENPRSLQ--AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82
S S L +PR+ A+R+ K + +F S+ + G +S FN +L L
Sbjct: 116 SRMRSCRLGPSPRTFAIIAERYAAMGKP---HRAVTVFMSMHEYGCFQDLSSFNTILDVL 172
Query: 83 VMLNEQDTAVKFF------------------SNHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
+ A F + ++ R +A EML + GL P++
Sbjct: 173 CKSKRVEMAYNLFKALKGKFKADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLT 232
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-------------- 170
TY +++G+ + G++NEA E +R +VVT ++ L +
Sbjct: 233 TYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQM 292
Query: 171 ---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P TFN +IQ LC + A+L+ M + G +P+ +++++I+ L
Sbjct: 293 VKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGL 346
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 17/142 (11%)
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + G+ EA+ + +K DV TYT+++ G VG A + N+ ++ GV
Sbjct: 238 LNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGV 297
Query: 155 TQNVVT---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALL 197
+V T LIQ+L + ++ G++P +IT+N VI+ LC VG++ +A+
Sbjct: 298 LPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAME 357
Query: 198 LLFLMYEHGKIPSRTSHDMLIK 219
L+ M + P+ ++++LI+
Sbjct: 358 LMERMEDDDCEPNVQTYNILIR 379
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 39/198 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL------------- 99
+K ++FN + KDG SV+ FN L+ L + + A+ F +
Sbjct: 282 IKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNL 341
Query: 100 ------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME--------- 144
VG ++ A E++ +++D +P+V TY ++ FC G + ++
Sbjct: 342 VIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGD 401
Query: 145 ----------LLNEAIERGVTQNVVTLIQLL-QRLEMGHIPRTITFNNVIQALCGVGKIH 193
L+N R + N++ +LL + ++ G +PR +TFN V+ L G
Sbjct: 402 CLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTGNQD 461
Query: 194 KALLLLFLMYEHGKIPSR 211
A +L L G++P +
Sbjct: 462 FAKEILSLQGGCGRLPRK 479
>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
alba]
Length = 413
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 146 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 189
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 190 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 249
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G +++A L+ M G P + ++ LI
Sbjct: 250 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLI 306
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
G + +A+ ++ + GLKPD +TYT ++DG CK G + A E I+ +
Sbjct: 278 GDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAY 337
Query: 155 TQNVVTLIQ----------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T + L Q L + L +G P T T+ +I C G + K LL M
Sbjct: 338 TAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 397
Query: 205 HGKIPSRTSHDMLI 218
+G +PS ++++L+
Sbjct: 398 NGHVPSVXTYNVLM 411
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 125 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 184
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 185 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 244
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 245 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 277
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 33/188 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L+ + +++ G + +V +N L+ L G +EEA+
Sbjct: 255 KVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCR----------------AGAIEEAF 298
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLL 165
+++ GL PD +TY AI++G CK GR ++A LL+E G+ NVV TLI
Sbjct: 299 GYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGF 358
Query: 166 QRL-----------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
R EM G P IT++N+I+ LC +G++ +A +L M + G +
Sbjct: 359 MRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADT 418
Query: 212 TSHDMLIK 219
+++++I+
Sbjct: 419 MTYNLVIE 426
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
HL EEA+ +L ++ G+ P+VYTY+ I++G C++G S A LL + I G+
Sbjct: 427 GHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKP 486
Query: 157 NVVTLIQL----------------LQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLL 199
N L L+++ ++ P +N++I L VGK+ +A+
Sbjct: 487 NAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYY 546
Query: 200 FLMYEHGKIPSRTSHDMLI 218
M E G P+ ++ LI
Sbjct: 547 DEMLEKGFQPNDFTYGGLI 565
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----- 168
++ G+ PDVYTY+ +++ +CKV A +++ E E G + NVVT L+ L
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293
Query: 169 ------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
+ G +P T+ +I LC G+ +A LL M G +P+ +
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYST 353
Query: 217 LIKKLDQQ 224
LI +Q
Sbjct: 354 LIDGFMRQ 361
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR ++A +L + GL P+V Y+ ++DGF + G ++EA +++ E GV N +T
Sbjct: 327 GRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITY 386
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ L ++G++ T+T+N VI+ +A LLL M +
Sbjct: 387 DNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRK 446
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G P+ ++ ++I L Q
Sbjct: 447 GGISPNVYTYSIIINGLCQ 465
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 36/180 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA+ +++ + + + + K G +S +N L+ ++ A F++
Sbjct: 675 KAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNS----------- 723
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL---- 164
+ GL P+ TYT ++DG+CK G +A++L NE + GV + L
Sbjct: 724 -----IICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGC 778
Query: 165 -----LQRL-----EMGHIPRTI----TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
LQ+ EM I R +FN ++ C GK+ + + L +M + +PS
Sbjct: 779 SNSGDLQQALFITEEM--IARGYAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPS 836
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A +L ++ +GL PD Y +++ GFCK +A+ LL+E ++G+ +
Sbjct: 642 GHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCY 701
Query: 162 IQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ ++ H P +T+ +I C G I A+ L M
Sbjct: 702 NALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLT 761
Query: 205 HGKIPSRTSHDML 217
G P + +L
Sbjct: 762 EGVAPDAFVYSVL 774
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 37/176 (21%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-------------------VKF 94
+E + N ++K G + +V ++ ++ L + E + A
Sbjct: 435 EEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPL 494
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
S + G A E L + + L PD+Y Y +++ G VG+ +EA+E +E +E+G
Sbjct: 495 ISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGF 554
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
P T+ +I G + KA LL M G P+
Sbjct: 555 Q------------------PNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPN 592
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR+ A +L + G D TY +++G + EA LLNE + G++ NV
Sbjct: 396 LGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVY- 454
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T++ +I LC +G+ +A LL M G P+ + LI
Sbjct: 455 -----------------TYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLI 495
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EAYE+L + ++G PDV TYT ++D C + + A E+ + + VT
Sbjct: 272 GKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTY 331
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I LL R EM GH+P +TF ++ ALC G +A L +M +
Sbjct: 332 ITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD 391
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ +++ LI L
Sbjct: 392 QGILPNLHTYNTLICGL 408
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 37/189 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
KA +E IF +K G +N ++ + E D A+K S + G
Sbjct: 480 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVI 539
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
RV+EA++M M +K LKP V TY ++ G K G+ EA+EL
Sbjct: 540 VVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM 599
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+++G P TITFN + LC ++ AL +LF M + G +P
Sbjct: 600 VQKGCP------------------PNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVP 641
Query: 210 SRTSHDMLI 218
+++ +I
Sbjct: 642 DVFTYNTII 650
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA E D + ++ G ++ +N L+ L L V R+++A
Sbjct: 375 KAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGL----------------LRVHRLDDAL 418
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ N+++ G+KP YTY +D + K G S A+E + +G+ N+V L L
Sbjct: 419 ELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSL 478
Query: 169 -----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
++G +P ++T+N +++ VG+I +A+ LL M E+G P
Sbjct: 479 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV 538
Query: 212 TSHDMLIKKL 221
+ LI L
Sbjct: 539 IVVNSLINTL 548
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 38/221 (17%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
+P + +D + K+ L E +F + G + + +N L+ E D A
Sbjct: 888 SPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACA 947
Query: 94 FFSNHL-------------------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F + MVGRV+E +K GL PDV Y I++G
Sbjct: 948 LFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLG 1007
Query: 135 KVGRSNEAMELLNE-AIERGVTQNVVTLIQLLQRL-------EMGHI----------PRT 176
K R EA+ L NE RG+T ++ T L+ L E G I P
Sbjct: 1008 KSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNV 1067
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
TFN +I+ GK A + M G P+ +++ L
Sbjct: 1068 FTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA ++ + + G +P+ Y +++GF K G ++ A L ++ GV
Sbjct: 905 GRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR------ 958
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T++ ++ LC VG++ + L + E G P ++++I L
Sbjct: 959 ------------PDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGL 1006
Query: 222 DQQ 224
+
Sbjct: 1007 GKS 1009
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-I 162
+E A ++ + VK+ G PDV TY ++D + K G+ +E EL E N +T I
Sbjct: 801 IEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNI 860
Query: 163 QLLQRLEMGHI-----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ ++ G++ P T+ +I L G++++A L M ++
Sbjct: 861 VISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDY 920
Query: 206 GKIPSRTSHDMLI 218
G P+ +++LI
Sbjct: 921 GCRPNCAIYNILI 933
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLL----------MALVMLNEQDTAVK-----FFSNHL 99
E + F +K+ G N V +N ++ ALV+ NE T+ + N L
Sbjct: 979 EGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSL 1038
Query: 100 MV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
++ G VEEA ++ ++ GL+P+V+T+ A++ G+ G+ A + + G
Sbjct: 1039 ILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGF 1098
Query: 155 TQNVVTLIQLLQR 167
+ N T QL R
Sbjct: 1099 SPNTGTYEQLPNR 1111
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +++ DG ++ DL+ ++ + +T + F + + G +++A L ++ G
Sbjct: 124 MLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFG 183
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----------------TQNVVTLI 162
+ Y+Y ++ K EAME+ I G +++ +++
Sbjct: 184 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVM 243
Query: 163 QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LL+ +E +G P TF I+ L GKI++A +L M + G P ++ +LI L
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K ++E I++F + + G + FN L L +E A+K
Sbjct: 585 KNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALK--------------- 629
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
ML + + G PDV+TY I+ G K G+ EAM ++ +++ V + VTL LL
Sbjct: 630 -MLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQ-MKKLVYPDFVTLCTLL 684
>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Glycine max]
Length = 903
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 38/206 (18%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLL--------------M 80
P + +D ++ L I F+ + +DG +V +N L+ +
Sbjct: 398 PNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESL 457
Query: 81 ALVMLNE--QDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
+ M N+ + TA F S + +V++A+++ + ++G+ P+VYT+TA++ G C
Sbjct: 458 FIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCS 517
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
+ EA EL +E +ER + P +T+N +I+ C GKI KA
Sbjct: 518 TNKMAEASELFDELVERKIK------------------PTEVTYNVLIEGYCRDGKIDKA 559
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKL 221
LL M++ G +P ++ LI L
Sbjct: 560 FELLEDMHQKGLVPDTYTYRPLISGL 585
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++A+E + + P+V TYTA+M+G CK G + A L V N +T
Sbjct: 694 GSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITY 753
Query: 162 ----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
I L + G + T+T N +I+ C +G+ H+A +L M E+
Sbjct: 754 GCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTEN 813
Query: 206 GKIPSRTSHDMLI 218
G P ++ LI
Sbjct: 814 GIFPDCVTYSTLI 826
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 43/226 (19%)
Query: 25 SAAESLDLKENPRSLQ--AQRFVDKI----KASPLKERIDIFNSIKKDGTNWSVSDFNDL 78
SAAESL ++ + ++ A F I K +++ ++N + +G +V F L
Sbjct: 452 SAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTAL 511
Query: 79 LMALVMLNEQDTAVKFF-------------------SNHLMVGRVEEAYEMLMNVKNDGL 119
+ L N+ A + F + G++++A+E+L ++ GL
Sbjct: 512 ISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGL 571
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179
PD YTY ++ G C GR ++A + +++ ++ V N + +
Sbjct: 572 VPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLN------------------EMCY 613
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225
+ ++ C G++ +AL M + G H +LI +QP
Sbjct: 614 SALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQP 659
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV EA E+ ++ GL DV TY ++ GFC++ + ++L++E +E G + +
Sbjct: 275 RVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVS 334
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G +P +N +I +LC G + KA LL M
Sbjct: 335 GLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLM 394
Query: 206 GKIPSRTSHDMLI 218
P+ ++ +LI
Sbjct: 395 NLRPNGITYSILI 407
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR---------- 167
GL + T+ I+ GFCK+GR +EA ++L+E E G+ + VT L+
Sbjct: 779 GLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGAS 838
Query: 168 -------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
L G P + +N +I C G++ KA L M G IP
Sbjct: 839 VKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIP 887
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA------MELLNEAIERGVT 155
G++++AYE+++ V G P+++ Y A+++ CK G ++A M L+N G+T
Sbjct: 344 GKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLR-PNGIT 402
Query: 156 QNVV-----------TLIQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMY 203
+++ I R+ I T+ +N++I C G + A L M
Sbjct: 403 YSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMT 462
Query: 204 EHGKIPSRTSHDMLI 218
G P+ T+ LI
Sbjct: 463 NKGVEPTATTFTSLI 477
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----- 161
A E + ++ +G + TY ++ G CK R +EA+E+ +G+ +VVT
Sbjct: 244 AKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVL 303
Query: 162 -----------IQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
IQL+ + +E+G P + ++ L GKI A L+ + G +P
Sbjct: 304 GFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVP 363
Query: 210 SRTSHDMLIKKL 221
+ ++ LI L
Sbjct: 364 NLFVYNALINSL 375
>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 418
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K G SV FN L+ + ++ +G + E
Sbjct: 147 VKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLNEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A L +E +++G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 18/109 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A+E + + ++ D YTA++ G C+ GRS +A ++L E + G+
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK------ 378
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
P T+ +I C G + LL M G +PS
Sbjct: 379 ------------PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPS 415
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 37/191 (19%)
Query: 65 KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------NHLMVGRV---------- 104
K G ++ F L+ L N+ AV F N +M G V
Sbjct: 135 KKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHT 194
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A+++L ++ KP+ TYT ++D FCK G + A LLNE ++ + ++ T L
Sbjct: 195 QKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTL 254
Query: 165 LQR--------------LEMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ LEM H+ P TFN+VI LC GK+ A ++ M E G
Sbjct: 255 IDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGV 314
Query: 208 IPSRTSHDMLI 218
P +++M+I
Sbjct: 315 DPDVITYNMII 325
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+A E++ + G+ PDV TY I+DG+ G+ + A E+ + I + + ++++
Sbjct: 297 GKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISY 356
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+Q+ + + + G P +T N ++ L +G+ A M
Sbjct: 357 NILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLS 416
Query: 205 HGKIPSRTSHDMLI 218
G IP +H L+
Sbjct: 417 AGHIPDLYTHCTLL 430
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+ A E+ ++ N ++PD+ +Y +++G+ + + +EAM++ E ++G+ ++VT
Sbjct: 332 GQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTC 391
Query: 162 IQLLQRL-EMGHIPRTITFNNVIQALCGVGKI---HKALLLLFLMYEHGKIPSRTSH 214
LL L E+G RT + N + G I + LL +++G + SH
Sbjct: 392 NVLLHGLFELG---RTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSH 445
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQ 156
G++++A+ + GL PDV TYTA++ G+C+ G +EA ++L + + G T
Sbjct: 472 GKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTY 531
Query: 157 NVV 159
NV+
Sbjct: 532 NVI 534
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR----- 103
+ + E + + I + G S+ N LL L L +A FF L G
Sbjct: 365 RQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLY 424
Query: 104 --------------VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
VEEA ++ ++ YTA++DG CK G+ ++A
Sbjct: 425 THCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAH------ 478
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
T + LI L P IT+ +I C G + +A +L M ++G +
Sbjct: 479 ----ATFEKLPLIGLH--------PDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLA 526
Query: 210 SRTSHDMLIK 219
+++++++
Sbjct: 527 DNRTYNVIVR 536
>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
Length = 448
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 34/165 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+AS ++E +++ + G ++ +N L+M NE D A++ F RV E
Sbjct: 301 CRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLF-------RVME- 352
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
G P+ Y+ +DG CKVG+ NEA E +++ERG
Sbjct: 353 --------EKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGC------------- 391
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
+P +T+N +I+ L G ++ +A L M E G I R+
Sbjct: 392 -----VPDNVTYNALIRGLFGANRMDEAHRLYREMGERGYIADRS 431
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 20/174 (11%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP--DVY 124
G ++ D + + + + +++T M GR+ EA + V +G K D
Sbjct: 233 GRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVL-EGEKALLDAG 291
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQNVVTL-----------IQLLQRL 168
Y +++G C+ + EA+E+ +++G T N + + +QL + +
Sbjct: 292 IYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRVM 351
Query: 169 E-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
E G P T+ ++ I LC VGKI++A E G +P +++ LI+ L
Sbjct: 352 EEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGL 405
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 38/221 (17%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
+P + VDK + + E ++F ++ +G + +N +L AL+ + D K
Sbjct: 42 DPDVVTCGLLVDKFCEMKRVGEVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFK 101
Query: 94 F-------------------FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F + G+ EA E++ + + PD TYTA++ C
Sbjct: 102 FSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSV-PDGMTYTALISVLC 160
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTI 177
K R+++AM++ + +E+ + N+ LL + ++ G+ P
Sbjct: 161 KHNRADDAMKVFDIMVEKEIVPNLDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSAS 220
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ +++ LC G+ + A + M G +P ++ LI
Sbjct: 221 TYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLI 261
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A ML + +G PDV T ++D FC++ R E EL E GV ++
Sbjct: 26 VDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQELESNGVAVGMLAYNA 85
Query: 164 LLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKA 195
+L+ L G +P + + ++ L GK +A
Sbjct: 86 ILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREA 134
>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 418
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K G SV FN L+ + ++ +G + E
Sbjct: 147 VKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLNEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A L +E +++G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A+E + + ++ D YTA++ G C+ GRS +A ++L E + G+
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK------ 378
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
P T+ +I C G + LL M G PS
Sbjct: 379 ------------PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPS 415
>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
[Burroughsia fastigiata]
Length = 431
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E +++ + G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFKLKSAMHASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
+ PDVYTY+ +++G CK + + A EL +E + +G+ N VT L+
Sbjct: 208 VXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G +++A L+ M G P + ++ LI
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLI 324
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A++++ + GLKPD TYT ++DG CK G + A E I+ + + V
Sbjct: 296 GDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ +I +C G + K LL M
Sbjct: 356 TALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQX 415
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 416 DGHAPSVVTYNVLM 429
>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 418
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A E + I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYMPS 415
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418
>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 418
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGCMPS 415
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 23/174 (13%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYT 127
DF+ + +D A+ + ++M+ G VEEA+ + + GL PD +TY
Sbjct: 258 DFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYG 317
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQ--------------LLQRLEM 170
A+M+G CK R EA LL+E G+ N+V TL+ L + +
Sbjct: 318 ALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISA 377
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G P I ++N+I+ LC +G++ +A LL M + G P +++ L++ QQ
Sbjct: 378 GVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQ 431
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 103/243 (42%), Gaps = 56/243 (23%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSI----KKDGTNWSVSD------------- 74
L + R +A+ +D++ S LK I ++ ++ K+G D
Sbjct: 323 LCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPN 382
Query: 75 ---FNDLLMALVMLNEQDTAVK--------------FFSNHLMVGRVEE-----AYEMLM 112
+++L+ L + + A K F N LM G ++ A+E+L
Sbjct: 383 KIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLN 442
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT----------------Q 156
++N G+ P+VY+Y +++G C+ G S EA LL E I G+
Sbjct: 443 EMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEG 502
Query: 157 NVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
N+ + L+++ ++ P +N++I+ L VG++ +A + + G +P ++
Sbjct: 503 NISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYS 562
Query: 216 MLI 218
LI
Sbjct: 563 GLI 565
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR+EEA E V+ GL PD +TY+ ++ G+CK G +A +LL + + G+ N T
Sbjct: 536 VGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADT 595
Query: 161 LIQLLQ 166
LL+
Sbjct: 596 YTDLLE 601
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
+E A+ +L V+ +GL PD++ Y++++ G CK+ +A+ LL+E + G+ +V
Sbjct: 644 MEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNA 703
Query: 161 LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LI R L G +P +T+ +I C G I A L M + G
Sbjct: 704 LIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRG 763
Query: 207 KIPSRTSHDML 217
P +++L
Sbjct: 764 IAPDAFVYNVL 774
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ +E+A +L + +GL+P + Y A++DGFC+ G + A + + + +G+ N VT
Sbjct: 676 IADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVT 735
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + L+ G P +N + + +AL L M+
Sbjct: 736 YTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMF 795
Query: 204 EHG 206
G
Sbjct: 796 NRG 798
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
G + A + ++ GL P+ TYTA++DG CK G +A +L E ++RG+
Sbjct: 712 GDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVY 771
Query: 155 ------TQNVVTLIQLL----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L Q L + G+ ++ FN ++ C GK+ + LL +M +
Sbjct: 772 NVLATGCSDAADLEQALFLTEEMFNRGYANVSL-FNTLVHGFCKRGKLQETEKLLHVMMD 830
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
+P+ + + ++ + +
Sbjct: 831 REIVPNAQTVEKVVSEFGK 849
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 106 EAYEMLMNVKN----DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
+A E+L +K G+ PDVYTY+ ++ CK + A ++ E R N
Sbjct: 222 DAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMN---- 277
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+T+N +I LC G + +A M ++G P ++ L+ L
Sbjct: 278 --------------EVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGL 323
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
++ G V+EA ++L + + GLKPD++TY I+ G CK G + A E++ +G +V
Sbjct: 235 MLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDV 294
Query: 159 VTLIQLLQRL------EMGHI-----------PRTITFNNVIQALCGVGKIHKALLLLFL 201
++ LL+ L E G P +T++ +I LC GKI +A+ LL L
Sbjct: 295 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 354
Query: 202 MYEHGKIPSRTSHDMLIKKLDQQ 224
M E G P S+D LI ++
Sbjct: 355 MKEKGLTPDAYSYDPLIAAFCRE 377
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++EEA +L +K GL PD Y+Y ++ FC+ GR + A+E L I G
Sbjct: 343 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC------- 395
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P + +N V+ LC GK +AL + + E G P+ +S++ + L
Sbjct: 396 -----------LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 444
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++ A ++L + +D +P V TYT +++ G +EA++LL+E + RG+
Sbjct: 203 GKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLK------ 256
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+N +I+ +C G + +A ++ + G P S+++L++ L
Sbjct: 257 ------------PDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRAL 304
Query: 222 DQQ 224
Q
Sbjct: 305 LNQ 307
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 18/100 (18%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179
+PDV+ Y A+++GFCK+ R ++A +L+ + + P T+T+
Sbjct: 151 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS------------------PDTVTY 192
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
N +I +LC GK+ AL +L + P+ ++ +LI+
Sbjct: 193 NIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIE 232
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++A+E+L+++++ P V TY ++ GFCK R +A+++L+ + G N T
Sbjct: 483 GMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTY 542
Query: 162 IQLLQ 166
L++
Sbjct: 543 TVLIE 547
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 45/234 (19%)
Query: 15 LLVDSPSRSPSAAESLDL----KENPRSLQAQRFVDKIKASPLKERIDI----FNSIKKD 66
+L+ + R E+++L KE + A + I A + R+D+ ++ D
Sbjct: 334 ILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 393
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE-------------------EA 107
G + ++N +L L + D A++ F VG A
Sbjct: 394 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 453
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
M++ + ++G+ PD TY +++ C+ G ++A ELL + ++
Sbjct: 454 LHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVD----------------MRS 497
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
E P +T+N V+ C +I A+ +L M +G P+ T++ +LI+ +
Sbjct: 498 CEFH--PSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGI 549
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+E+A ++L ++ +G +P+ TYT +++G G EAMEL N+ + I
Sbjct: 519 RIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR----------I 568
Query: 163 QLLQRLEMGHIPRTITFNNVIQ 184
+ + RT NV+Q
Sbjct: 569 NAISEYSFKRLHRTFPLLNVLQ 590
>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 418
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYMPS 415
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418
>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like, partial [Glycine max]
Length = 594
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 20/147 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
VK+F G++ EA + ++ + G+ PD +TY +++GFCK G+ EA +++E
Sbjct: 215 VKWFGKE---GKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMAR 271
Query: 152 RGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHK 194
+G+ ++ TL +L L M G+I +T+ +I + K
Sbjct: 272 KGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDK 331
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
AL L M + G +PS S++ LI+ L
Sbjct: 332 ALKLWEEMKKRGIVPSVVSYNPLIRGL 358
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG------VT 155
G+++EA + +++ L PDV TY ++DG K S E LL E RG VT
Sbjct: 151 GKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAVT 210
Query: 156 QNVVTLI------------QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
N++ +++ +E G P T+N +I C GK+ +A ++ M
Sbjct: 211 HNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMA 270
Query: 204 EHGKIP 209
G P
Sbjct: 271 RKGLKP 276
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 37/184 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK-------------------FFSN 97
+ ++ +KK G SV +N L+ L + + D AV
Sbjct: 333 LKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHG 392
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ G V++A++ + + KPD++T ++ G C+V +A +L N I + QN
Sbjct: 393 YCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISK---QN 449
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
V + +T+N +I LC G++ +A L+ M P + +++ +
Sbjct: 450 SVDV---------------VTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTYNAI 494
Query: 218 IKKL 221
++ L
Sbjct: 495 VRAL 498
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA++++ +++ +PD YTY AI+ GR+ EA + +++ E G V
Sbjct: 467 GRLDEAFDLMTDMEVKKFEPDQYTYNAIVRALTHAGRTEEAEKFMSKLSETG---QAVKT 523
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
Q L+ I ++ I LC GK +A+ L
Sbjct: 524 HDTSQELDAS---SDIMYSQQISDLCTQGKYKEAMKLF 558
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 37/167 (22%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK---------FFSNHL 99
KA L E + + + + G + N +L L M + + A + + + +
Sbjct: 255 KAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEV 314
Query: 100 MVGRV----------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G + ++A ++ +K G+ P V +Y ++ G C G++++A++ LNE
Sbjct: 315 TYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNEL 374
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+E+G+ +P ++ N +I C G + KA
Sbjct: 375 LEKGL------------------VPDEVSCNIIIHGYCWEGMVDKAF 403
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 31/158 (19%)
Query: 79 LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
L A V N+ A + F N L+ + DV+TY ++ G C G+
Sbjct: 106 LAAYVHANQPHLAFQLFQNELIXXXXXXSI-------------DVWTYNTLVKGLCDEGK 152
Query: 139 SNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEM--GHIPRTITFN 180
+EA+ + +E + +VVT +LL+ ++ G P +T N
Sbjct: 153 IDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAVTHN 212
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+++ GKI++A + M E G P +++ +I
Sbjct: 213 IMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMI 250
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E A+ M+ ++ + G+ PDV TY+ ++D FCK R +EA+ELL+ RG T NVV
Sbjct: 273 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVV--- 329
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN++I LC + +A + +Y +P + + ++LI
Sbjct: 330 ---------------TFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILI 370
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 113/261 (43%), Gaps = 45/261 (17%)
Query: 4 SAANSPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDK--IKASPLKERIDIF- 60
+AAN P + +++ + + ++ + RS+ V + +A ++IF
Sbjct: 10 AAANLLVPITTATINTQRVNLCPLKFFFVRSSSRSVADYNIVLQSLCRAGETARALEIFR 69
Query: 61 NSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLM-----V 101
+ +DG ++ +N ++ L NE ++ F N L+
Sbjct: 70 GEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKA 129
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVV 159
G +EEA + + + G P+V TY+ +++G CKVGR +EA EL+ E + V N++
Sbjct: 130 GDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNII 189
Query: 160 TL----------------IQLLQRLEMGHI---PRTITFNNVIQALCGVGKIHKALLLLF 200
T +L++ L G + P T+TF+ +I LC G+ +A
Sbjct: 190 TYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA--CND 247
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G +P+ +++ L+ L
Sbjct: 248 DMIAGGYVPNVVTYNALVNGL 268
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 103/242 (42%), Gaps = 38/242 (15%)
Query: 18 DSPSRSPSAAESL-DLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDF 75
D R+ + ES+ D P + VD KAS + E +++ + + G +V F
Sbjct: 272 DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTF 331
Query: 76 NDLLMALVMLNEQDTAVKF---FSNHLMV----------------GRVEEAYEMLMNVKN 116
N ++ L + A + N ++V G E+A + +
Sbjct: 332 NSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVA 391
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------- 168
++PDV T+ A++DG CK G+ A ++L+ GV NVVT L+ L
Sbjct: 392 KNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEE 451
Query: 169 ------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
EM G +P ++T+ +++ ALC + AL L+ + G P ++++L+
Sbjct: 452 PCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVD 511
Query: 220 KL 221
L
Sbjct: 512 GL 513
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EE E L + + G P+ TY +++ C+ R+++A++L+++ G + VT
Sbjct: 447 GRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTY 506
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM GH P + TF L G + + LL ++
Sbjct: 507 NILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLA 566
Query: 205 HGKIPSRTS 213
G +P T+
Sbjct: 567 KGMLPDATT 575
>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
Length = 696
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 37/222 (16%)
Query: 34 ENPRSLQAQRFVDKIKASPL-KERIDIFNSIKKDGTNWSVSDFNDLLMALV-------ML 85
+ P + +D + S L E +IFNS+ + G + S + LL M
Sbjct: 353 QRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMN 412
Query: 86 NEQDTAVK--------FFS----NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
N +D V+ F+ + GR++EA ++ G PD+ YT ++DG
Sbjct: 413 NVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGL 472
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRT 176
CK+GR ++AM + I+ G++ +++T L+ + ++ G P
Sbjct: 473 CKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNV 532
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN++I L GK+ +A L LM G P+ S++ +I
Sbjct: 533 NTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMI 574
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+L G+ EA +L + DG +P+V TY+ ++D CK G EA E+ N I+ G
Sbjct: 331 GYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKP 390
Query: 157 NVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
N T LL ++ G P FN I A C G++ +A L
Sbjct: 391 NASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTF 450
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M + G +P ++ +I L
Sbjct: 451 NKMQQQGFMPDIVAYTTVIDGL 472
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 103 RVEEAYEMLMNVKNDG--LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ EEA E++ + DG P+V +YT ++ GF K G +A L + ++ G+ NVVT
Sbjct: 230 KCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVT 289
Query: 161 L---------IQ-------LLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+Q +LQ++ HI P T+N++I G+ +A+ +L M
Sbjct: 290 CNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMS 349
Query: 204 EHGKIPSRTSHDMLIKKL 221
G+ P+ ++ MLI L
Sbjct: 350 RDGQRPNVVTYSMLIDCL 367
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 19/120 (15%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVVTLIQLL---------- 165
G PDV++YT ++ G C + EA EL++ E G NVV+ ++
Sbjct: 210 GCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVG 269
Query: 166 -------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L+ G P +T N+VI LC V + KA +L M + +P+ T+++ LI
Sbjct: 270 KAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLI 329
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +AY + + + G+ P+V T +++DG CKV ++A +L + I+ + N T
Sbjct: 266 GDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTY 325
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++L+ + G P +T++ +I LC G +A + M +
Sbjct: 326 NSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQ 385
Query: 205 HGKIPSRTSHDMLI 218
G+ P+ +++ L+
Sbjct: 386 SGQKPNASTYGSLL 399
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 20/172 (11%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------- 99
K L + + F + DG + + FN L+ + + + A + F +
Sbjct: 473 CKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNV 532
Query: 100 -----MV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
M+ G+V EA ++ + G KP+V +Y ++ G+ G E M+LL++
Sbjct: 533 NTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDD 592
Query: 149 AIERGVTQNVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+ G+ VT LL + MG P +T +I + C G+I L L
Sbjct: 593 MLLIGLKPTAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLF 644
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 45 VDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
+DK+ K + E +F+ + + G +V +N ++ + E +K + L++G
Sbjct: 539 IDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGL 598
Query: 104 VEEAYE---MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
A +L + + GLKPDV T ++D C+ GR + + L E + + + +T
Sbjct: 599 KPTAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTIT 658
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
+ PD+ T+ ++ C G N L + I+ G+ VT LL+ L
Sbjct: 140 VAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAM 199
Query: 169 --------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
E+G P ++ +++ LC K +A L+ +M E G
Sbjct: 200 NIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDG 245
>gi|357161570|ref|XP_003579133.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Brachypodium distachyon]
Length = 721
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 17/108 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G +++A +M+ ++ +G KP++ T+TA+++G CKVG+S+EA ELLN++ E T + +T
Sbjct: 385 IGEIDQARKMMKHMYKNGCKPNIVTHTALLNGLCKVGKSSEAWELLNKSGEDWWTPSDIT 444
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
++ Q L+ G P T+ N +I ALC GK
Sbjct: 445 YSVVMHGFRREGKLKESCDVVAQMLQKGFFPTTVEINLLIHALCKEGK 492
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA E++ + + PDV TY+A++DGFC++G ++A +++ + G N+VT
Sbjct: 351 GRMAEAKEIVGEMISKECHPDVVTYSAVVDGFCRIGEIDQARKMMKHMYKNGCKPNIVTH 410
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L E P IT++ V+ GK+ ++ ++ M +
Sbjct: 411 TALLNGLCKVGKSSEAWELLNKSGEDWWTPSDITYSVVMHGFRREGKLKESCDVVAQMLQ 470
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ ++LI L ++
Sbjct: 471 KGFFPTTVEINLLIHALCKE 490
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EA E L + + D Y+A++ FC GR EA E++ E I +
Sbjct: 316 GHADEALEFLRESEGKRFRVDEVGYSAVVHSFCLNGRMAEAKEIVGEMISKECH------ 369
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T++ V+ C +G+I +A ++ MY++G P+ +H L+ L
Sbjct: 370 ------------PDVVTYSAVVDGFCRIGEIDQARKMMKHMYKNGCKPNIVTHTALLNGL 417
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + FS G +E A +L ++ PDV TYT +++ + GR EA L+ +
Sbjct: 517 TVIHGFSRQ---GDLESALSLLDDLYLSNRHPDVVTYTVVVNALGRKGRLKEATGLVEKM 573
Query: 150 IERGVTQNVVTLIQLLQR-LEMGHIPRTI--------------TFNNVIQALCGVGKIHK 194
+ RG+ +VT ++ R E G + + +N VI+ LC GK+++
Sbjct: 574 LNRGLVPTLVTYRTVIHRYCEKGTVEELVDLLDKMLARQELKSVYNQVIEKLCAFGKLNE 633
Query: 195 ALLLL 199
A LL
Sbjct: 634 AYGLL 638
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A ++ G++PDV TY ++ G C V R EA+E++ ++ G
Sbjct: 210 GRVDKALGFADRMRRVGVEPDVVTYNCLIKGLCSVRRVVEALEMIGVMLKNGCP------ 263
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY-EHGKIPSRTSHDMLIKK 220
P I++ V+ LC ++ + LL M + G + + +++MLI
Sbjct: 264 ------------PDKISYYTVMSFLCKEKRVSEVRSLLATMRNDAGLLTDQVTYNMLIHV 311
Query: 221 LDQQ 224
L +
Sbjct: 312 LAKH 315
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 52/172 (30%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF--------------------------- 133
VG+ EA+E+L D P TY+ +M GF
Sbjct: 420 VGKSSEAWELLNKSGEDWWTPSDITYSVVMHGFRREGKLKESCDVVAQMLQKGFFPTTVE 479
Query: 134 --------CKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQR---LEMGHI------ 173
CK G+ EA E + + +G T NVV T+I R LE
Sbjct: 480 INLLIHALCKEGKPAEAKEFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLLDDLY 539
Query: 174 -----PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +T+ V+ AL G++ +A L+ M G +P+ ++ +I +
Sbjct: 540 LSNRHPDVVTYTVVVNALGRKGRLKEATGLVEKMLNRGLVPTLVTYRTVIHR 591
>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g41170, mitochondrial; Flags: Precursor
gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 20/152 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + M G V+EA +M ++ G PDV YT++++GFCK + ++AM++ E
Sbjct: 284 TYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEM 343
Query: 150 IERGVTQNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKI 192
++G+T N +T L+Q + G P T+N ++ LC GK+
Sbjct: 344 SQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV 403
Query: 193 HKALLLLFLMYEH---GKIPSRTSHDMLIKKL 221
KAL++ M + G P+ ++++L+ L
Sbjct: 404 KKALMIFEDMQKREMDGVAPNIWTYNVLLHGL 435
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 39/228 (17%)
Query: 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFV--DKIKASPLKERIDIFNSIKKDGTNWSV 72
L+ + ++ S + LDL R+ R + + + + E +D+F + + S+
Sbjct: 13 LVKGNSGKALSFSRLLDLSFWVRAFCNYREILRNGLHSLQFNEALDLFTHMVESRPLPSI 72
Query: 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY--EMLMNVKND------------- 117
DF LL + + + D + + ++G + Y +LMN
Sbjct: 73 IDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGK 132
Query: 118 ----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
G +PD+ T+T++++GFC R EAM ++N+ +E G+
Sbjct: 133 MMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIK------------------ 174
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P + + +I +LC G ++ AL L M +G P + L+ L
Sbjct: 175 PDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGL 222
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+EEA M+ + G+KPDV YT I+D CK G N A+ L ++ G+ +VV
Sbjct: 157 RMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYT 216
Query: 163 QLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKA 195
L+ L G P ITFN +I A GK A
Sbjct: 217 SLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDA 266
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G+V+ A + ++ + G+KP+V TYT ++ G + G +EA L + E GV+
Sbjct: 474 GKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 43/199 (21%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
K + + + IF + + G + + L+ + + + A + FS+
Sbjct: 329 KCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIR 388
Query: 98 ------HLMV--GRVEEA---YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
H + G+V++A +E + + DG+ P+++TY ++ G C G+ +A+ +
Sbjct: 389 TYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVF 448
Query: 147 NEAIER-------------------GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC 187
+ +R G +N V L L G P +T+ +I L
Sbjct: 449 EDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLP--SKGVKPNVVTYTTMISGLF 506
Query: 188 GVGKIHKALLLLFLMYEHG 206
G H+A +L M E G
Sbjct: 507 REGLKHEAHVLFRKMKEDG 525
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
+KA E ++F ++K+ G +N ++ + + A + + G
Sbjct: 345 VKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTV 404
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
R++EAY + K++G+K +V Y++++DGF KVGR +EA ++ E
Sbjct: 405 VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEE 464
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
+++G+T NV T LL L ++ P IT++ +I LC V K
Sbjct: 465 LMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRK 524
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+KA + M + G P+ ++ +I L
Sbjct: 525 FNKAFVFWQEMQKLGLKPNTITYTTMISGL 554
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 37/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
KA+ L E +++F ++++ +N ++M + D A G
Sbjct: 67 KANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVI 126
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
RVEEA + +K D + P+V TY ++D C+ G+ N A+E+ ++
Sbjct: 127 AYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDM 185
Query: 150 IERGVTQNVVTLIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKI 192
G+ NV+T+ ++ RL P +TF+++I L G++
Sbjct: 186 ERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRV 245
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A L M + G +P + LI+
Sbjct: 246 DDAYSLYEKMLDCGHVPGAIVYTSLIRSF 274
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G E+ + + G PD +Y+ ++ G K G +NE EL E+G +
Sbjct: 313 GETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLD---- 368
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T +N VI C GK++KA LL M G P+ ++ +I L
Sbjct: 369 --------------THAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGL 414
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 83/190 (43%), Gaps = 22/190 (11%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K+ L+E DI +++K + S + +++ + + F R++EA
Sbjct: 21 VKSRKLREAFDIIQTMRKFKFRPAFSAYT------ILIGKVGLMLLFPWVLCKANRLDEA 74
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------ 161
E+ ++ + P Y Y ++ G+ G+ +EA LL +G +V+
Sbjct: 75 VELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTC 134
Query: 162 ----------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+++ + ++ +P T+N +I LC GK++ AL + M G P+
Sbjct: 135 LGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNV 194
Query: 212 TSHDMLIKKL 221
+ +++I +L
Sbjct: 195 LTVNIMIDRL 204
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 42/219 (19%)
Query: 11 PFSVLLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNS 62
P +L+D R +L+++++ P L +D++ KA L+E IF
Sbjct: 160 PTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEG 219
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122
+ + F+ L+ L GRV++AY + + + G P
Sbjct: 220 MDDKVCTPNAVTFSSLIDGLGK----------------CGRVDDAYSLYEKMLDCGHVPG 263
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182
YT+++ F K GR + ++ E + G + + +TLI N
Sbjct: 264 AIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPD-LTLI-----------------NTY 305
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + G+ K L + HG IP S+ +LI L
Sbjct: 306 MDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGL 344
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 37/191 (19%)
Query: 55 ERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
E++D S+ K+ G +V +N L+ L N FS A E+
Sbjct: 714 EKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNN-------FSG---------AEEL 757
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-- 168
+ +G+ P+V TYTA++DG CK G ++ A+E+ N+ IE+G N++T L++ L
Sbjct: 758 CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQ 817
Query: 169 ---------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
G IP IT+ +I+A GK+ A L M + G P+ +
Sbjct: 818 EGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWT 877
Query: 214 HDMLIKKLDQQ 224
+ +LIK L +
Sbjct: 878 YGVLIKGLKNE 888
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 17/136 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G E+A+ + +++KN G +P+VYTYTA++ G C G A+ L + GV N VT
Sbjct: 503 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVT 562
Query: 161 ---LIQLL---QRLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI +L +R++ G +T+N +I+ C +G KA+L++ M
Sbjct: 563 YNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNML 622
Query: 204 EHGKIPSRTSHDMLIK 219
+ G + +++ +IK
Sbjct: 623 QRGHSANLVTYNTIIK 638
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 92/243 (37%), Gaps = 71/243 (29%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------------ 100
+K + N + ++G ++ +N+++ +L + A+ +N L
Sbjct: 576 IKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 635
Query: 101 -------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
G A +L +++ G KPD ++YT ++ GFCK+ + A L NE ++ G
Sbjct: 636 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 695
Query: 154 VTQNVVT-------------------LIQLLQR--------------------------- 167
+ N VT L++ ++R
Sbjct: 696 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 755
Query: 168 ------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+E G P +T+ +I LC G AL + M E G +P+ ++ LI+ L
Sbjct: 756 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 815
Query: 222 DQQ 224
Q+
Sbjct: 816 GQE 818
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 25/184 (13%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQD----TAVKFFSNHLMVGRVEEAYEMLMNV 114
+ N++ KDG +V+D + +M V +E T H ++ A ++ +
Sbjct: 391 VINALCKDG---NVAD-AETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQM 446
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------TQNVVTLIQL--- 164
+G +P+ TY+ +++G C GR NEA +L+ E I G+ T ++ L +
Sbjct: 447 AKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 506
Query: 165 --LQRL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
RL G P T+ +I LC G + A+ L M G P+ +++ L
Sbjct: 507 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 566
Query: 218 IKKL 221
I L
Sbjct: 567 INIL 570
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 22/132 (16%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M V + Y +++ +G++P++ Y A+++ CK G +A ++ + E ++ +
Sbjct: 365 MTAAVMDRYHRMLS---EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTF 421
Query: 160 TLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ Q + G P T+T++ +I LC G++++A L+ M
Sbjct: 422 TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 481
Query: 203 YEHGKIPSRTSH 214
HG +P T+H
Sbjct: 482 ILHGILP--TAH 491
>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 566
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 34/206 (16%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ---------DT 90
+A R +D +P N+ D S+ D L A+ +L+ Q T
Sbjct: 157 EALRVLDHTSVAP--------NAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVT 208
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
V +A ++ ++ G KPDV TY ++ GFCK GR +EA+ L +
Sbjct: 209 CTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLP 268
Query: 151 ERGVTQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIH 193
G +V++ +L+ L G P +TFN +I LC G +
Sbjct: 269 SYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLG 328
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIK 219
KAL +L +M +HG P+ S + LI+
Sbjct: 329 KALNVLEMMPKHGHTPNSRSFNPLIQ 354
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 43/212 (20%)
Query: 37 RSLQAQRFVDKI----------KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
R LQ++ + D + K S + + + +FN ++ G V +N L
Sbjct: 196 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVL-------- 247
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+K F GR++EA L + + G + DV ++ I+ C GR +AM+LL
Sbjct: 248 -----IKGFCKE---GRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLL 299
Query: 147 NEAIERGVTQNVVT-------------LIQLLQRLEM----GHIPRTITFNNVIQALCGV 189
+ +G +VVT L + L LEM GH P + +FN +IQ C
Sbjct: 300 ATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNR 359
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +A+ L +M G P ++++L+ L
Sbjct: 360 KGIDRAIEHLEIMVSRGCYPDIVTYNILLTAL 391
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V++A +L + + G P + +Y ++DG KVG++ A+ELL E +G+ +++T
Sbjct: 395 GKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITC 454
Query: 162 IQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L G P +N+++ LC + A+ L M
Sbjct: 455 TSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVA 514
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G P+ S+ LIK + +
Sbjct: 515 NGCKPTEASYTTLIKGITYE 534
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A ++L PDV T T ++D CK +AM+L NE +G +VVT
Sbjct: 185 GKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTY 244
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L++L G I+ N ++++LC G+ A+ LL M
Sbjct: 245 NVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLR 304
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G PS + ++LI L Q+
Sbjct: 305 KGCFPSVVTFNILINFLCQK 324
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 20/137 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA +L + + P+ TY A++ C G+ +AM++L+ ++ +VVT
Sbjct: 153 GEIEEALRVL---DHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTC 209
Query: 162 IQLL----------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q +++ G P +T+N +I+ C G++ +A++ L +
Sbjct: 210 TVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPS 269
Query: 205 HGKIPSRTSHDMLIKKL 221
+G SH+M+++ L
Sbjct: 270 YGCQSDVISHNMILRSL 286
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 23/138 (16%)
Query: 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
LN +++ + + G +EE L + N G PDV TA++ FCK+GR
Sbjct: 66 LNFEESEIHHLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGR------ 119
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T+N ++ +L+ E G + ++N +I A C G+I +AL +L +
Sbjct: 120 ----------TKNATRIMGILE--ESGAVIDANSYNVLINAYCKSGEIEEALRVL----D 163
Query: 205 HGKI-PSRTSHDMLIKKL 221
H + P+ ++D ++ L
Sbjct: 164 HTSVAPNAATYDAVLCSL 181
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
++ F N + R E E++++ G PD+ TY ++ CK G+ ++A+ +L++
Sbjct: 353 IQGFCNRKGIDRAIEHLEIMVS---RGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSS 409
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+G + P I++N VI L VGK A+ LL M G P
Sbjct: 410 KGCS------------------PSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDL 451
Query: 212 TSHDMLIKKLDQQ 224
+ ++ L ++
Sbjct: 452 ITCTSVVGGLSRE 464
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ + E I F+ +K G + +N ++M L + A+ F
Sbjct: 463 REGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDF-------------- 508
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
L+++ +G KP +YT ++ G G + EA +L NE RG+ +
Sbjct: 509 --LVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGLVK 554
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 18/122 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A +L +K +GLK D +TY ++ GF + G+ A L NE +E G++ NVV
Sbjct: 461 GYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVV-- 518
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+N +I V K+ AL L + M E G +PS +++M+I
Sbjct: 519 ----------------TYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGF 562
Query: 222 DQ 223
+
Sbjct: 563 SK 564
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 32/202 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
+ L+ +FN + + G + +V +N ++ + + + D A+ F
Sbjct: 494 RGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSG 553
Query: 96 -SNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N ++ G R+ EA + GL P+V TYT+ +DG CK GR++ A ++ +E
Sbjct: 554 TYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEM 613
Query: 150 IERGVTQNVVTLIQLL-------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+R N+ T L+ + L+ G P T+ +++ LCG G+ ++A
Sbjct: 614 KKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRGLCGKGRCYEAD 673
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
L+ M + G PS + L+
Sbjct: 674 QLVESMKKKGLQPSEEIYRALL 695
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T H G ++ A+EM + DG P+ TY+A+++G C GR EAM++L E
Sbjct: 239 TYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEM 298
Query: 150 IERGV-------TQNVVTL---------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKI 192
I++G+ T +V+L ++LL ++ + G P T+ +I L GK
Sbjct: 299 IDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKF 358
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A+ + M G +P+ ++ LI +L
Sbjct: 359 EVAIGVYHKMLADGLVPTAVTYSALINQL 387
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++E A+ + + G+ P+V TY AI++G+ V + ++A+ L + +E G + T
Sbjct: 496 GKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTY 555
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ + ++ G +P IT+ + I LC G+ A + M +
Sbjct: 556 NMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKK 615
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P+ ++ LI L Q+
Sbjct: 616 RDYFPNLCTYSSLIDGLCQE 635
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+EA ++ ++ + G PD +TYT+++ G CK G + A E+ + ++ G N VT
Sbjct: 216 GKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTY 275
Query: 162 IQLLQ------RLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RLE G P + I +LC G+ +A+ LL M +
Sbjct: 276 SALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKK 335
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G P+ ++ LI L +
Sbjct: 336 RGCGPNVQTYTALISGLSR 354
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------- 165
N G++P+++T+ A++ C G+ EA ++ G + T L+
Sbjct: 195 NSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLD 254
Query: 166 -------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ ++ G P ++T++ +I LC G++ +A+ +L M + G P+ ++ + I
Sbjct: 255 LAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPI 314
Query: 219 KKL 221
L
Sbjct: 315 VSL 317
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 165 LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ L G P TFN +I+ LC GK+ +A L++ ++ +G P ++ LI
Sbjct: 191 IEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLI 244
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G A ++L ++ G KPDV Y ++D CK R+NEAM +E +++G+ NVVT
Sbjct: 189 IGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVT 248
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+L Q + +P T+TF ++ LC G I +A + +M
Sbjct: 249 YSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMT 308
Query: 204 EHGKIPSRTSHDMLI 218
E+G P ++ L+
Sbjct: 309 ENGVEPDAYTYSALM 323
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 92/225 (40%), Gaps = 41/225 (18%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ VD + K + E +F + ++G ++ L+ + ++ D A K
Sbjct: 279 PNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKL 338
Query: 95 FSNHLMVG---------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
F +MVG R+ EA +L + + L PD TY+ +M GF
Sbjct: 339 FD--IMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGF 396
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI----------------PRT 176
C+ GR A +L E G+ + +T LL L + GH+ P
Sbjct: 397 CQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHI 456
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +IQ +C GK+ A L ++ G PS ++ ++I L
Sbjct: 457 CIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGL 501
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
++ +A ++ + G P + TYT I+ G CK+G + A++LL + E+G +VV
Sbjct: 155 AKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAY 214
Query: 160 -TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T+I L + ++ G P +T+++++ C +G++++A L M
Sbjct: 215 NTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIG 274
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+P+ + +L+ L ++
Sbjct: 275 RNVMPNTVTFTILVDGLCKE 294
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++E A E+ N+ G++P V TYT ++ G K G SNEA E+ + + G
Sbjct: 470 GKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGC------- 522
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P + T+N IQ G A+ L+ M G ++ ML+
Sbjct: 523 -----------LPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLL 568
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNE--AMELLNEAIERGVTQNVVTLIQLLQRL-------- 168
++P+VYT T +++ C R + A L + + G+ VT LL L
Sbjct: 100 IRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIID 159
Query: 169 ---------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+MG P IT+ +I+ LC +G AL LL M E G P +++ +I
Sbjct: 160 AVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVID 219
Query: 220 KL 221
L
Sbjct: 220 SL 221
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQDTAVKF---F 95
+A R + ++ S ++ I I+N + + N+ + +L L + Q + V +
Sbjct: 439 EAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMI 498
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S L G EA EM + +G P+ TY + GF + G + A+ L+ E + RG +
Sbjct: 499 SGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFS 558
Query: 156 QNVVTLIQLLQRLE 169
+ T Q+L LE
Sbjct: 559 ADSSTF-QMLLDLE 571
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
++ +++FN + G + +N L+ L + G + A +++
Sbjct: 341 VERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ----------------GLILHALQVMN 384
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------- 161
+ +G PD+ TY +++G CK+G ++A ++N+AI +G +V T
Sbjct: 385 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 444
Query: 162 -----IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+QL++R+ E G P TIT+N+V+ LC GK+++ M G P+ +++
Sbjct: 445 KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYN 504
Query: 216 MLIKKL 221
+LI+
Sbjct: 505 ILIENF 510
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+EA L + N G PD +TY I+DG+CK+ EA ELL +A+ +G + VT L
Sbjct: 272 QEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSL 331
Query: 165 L----------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ + LE+ G P + +N++++ LC G I AL ++ M E G
Sbjct: 332 INGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGC 391
Query: 208 IPSRTSHDMLIKKL 221
P +++++I L
Sbjct: 392 HPDIQTYNIVINGL 405
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+Q T + G VE A E+ + G+KPD+ Y +++ G C G A++++
Sbjct: 324 DQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVM 383
Query: 147 NEAIERGV-----TQNVV------------TLIQLLQRLEMGHIPRTITFNNVIQALCGV 189
NE E G T N+V + + + G++P TFN +I C
Sbjct: 384 NEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKR 443
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
K+ AL L+ M+E+G P +++ ++ L
Sbjct: 444 LKLDSALQLVERMWEYGIAPDTITYNSVLNGL 475
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 20/207 (9%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERID---IFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
L E R +A R VD ++A + + + + + K + +M L +
Sbjct: 231 LCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDD 290
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T + + V+EA E+L + G PD TY ++++G C G A+EL NE
Sbjct: 291 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 350
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
A +G+ ++V L++ L E G P T+N VI LC +G
Sbjct: 351 AQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGN 410
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
I A +++ G +P + + LI
Sbjct: 411 ISDATVVMNDAIMKGYLPDVFTFNTLI 437
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 80/198 (40%), Gaps = 36/198 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-------------- 102
+ + N + ++G + + +N ++ L + A ++ +M G
Sbjct: 380 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 439
Query: 103 -----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+++ A +++ + G+ PD TY ++++G CK G+ NE E E I +G N
Sbjct: 440 YCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPN 499
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+T L++ + G P ++FN +I C G + A LL
Sbjct: 500 PITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQ 559
Query: 201 LMYEHGKIPSRTSHDMLI 218
+ E G + + + LI
Sbjct: 560 KLEEKGYSATADTFNTLI 577
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
+ N + K G V++ N+ +++ + + N ++EEA ++++ +
Sbjct: 471 VLNGLCKAG---KVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS 527
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------- 165
+GL PD ++ ++ GFC+ G A L + E+G + T L+
Sbjct: 528 QEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH 587
Query: 166 -------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L GH + T+ +I C + +A + L M + G IPS ++ +I
Sbjct: 588 MAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVI 647
Query: 219 KKL 221
L
Sbjct: 648 NSL 650
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 29/186 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L++ +D F + + +N ++ ALV D A K + L G
Sbjct: 62 RAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAG------ 115
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI------ 162
+ PD++T+T + FC R + A+ LL RG +
Sbjct: 116 ----------VSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHG 165
Query: 163 ------QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
QL ++ H+ P FN V+ ALC G + +A LLL + + G + +++
Sbjct: 166 HTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYN 225
Query: 216 MLIKKL 221
+ I+ L
Sbjct: 226 IWIRGL 231
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +A ++ + + + P++ + ++ CK G EA LL + I+RG++ N+ T
Sbjct: 165 GHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTY 224
Query: 162 ----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++L+ + +P +T+N +I+ LC +A+ L M
Sbjct: 225 NIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ 284
Query: 206 GKIPSRTSHDMLI 218
G +P +++ +I
Sbjct: 285 GCLPDDFTYNTII 297
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 34/151 (22%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F +++ G + + FN L+ A FS L + E+ ++ +++ G
Sbjct: 557 LFQKLEEKGYSATADTFNTLIGA-------------FSGKLNMHMAEKIFDEMLS---KG 600
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
+ D YTY ++DG CK + A L E I++G IP T
Sbjct: 601 HRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGF------------------IPSMST 642
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
F VI +L ++ +A+ ++ +M + G +P
Sbjct: 643 FGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 673
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
++ +++FN + G + +N L+ L + G + A +++
Sbjct: 342 VERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ----------------GLILHALQVMN 385
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------- 161
+ +G PD+ TY +++G CK+G ++A ++N+AI +G +V T
Sbjct: 386 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 445
Query: 162 -----IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+QL++R+ E G P TIT+N+V+ LC GK+++ M G P+ +++
Sbjct: 446 KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYN 505
Query: 216 MLIKKL 221
+LI+
Sbjct: 506 ILIENF 511
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+EA L + N G PD +TY I+DG+CK+ EA ELL +A+ +G + VT L
Sbjct: 273 QEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSL 332
Query: 165 L----------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ + LE+ G P + +N++++ LC G I AL ++ M E G
Sbjct: 333 INGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGC 392
Query: 208 IPSRTSHDMLIKKL 221
P +++++I L
Sbjct: 393 HPDIQTYNIVINGL 406
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+Q T + G VE A E+ + G+KPD+ Y +++ G C G A++++
Sbjct: 325 DQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVM 384
Query: 147 NEAIERGV-----TQNVV------------TLIQLLQRLEMGHIPRTITFNNVIQALCGV 189
NE E G T N+V + + + G++P TFN +I C
Sbjct: 385 NEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKR 444
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
K+ AL L+ M+E+G P +++ ++ L
Sbjct: 445 LKLDSALQLVERMWEYGIAPDTITYNSVLNGL 476
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 20/207 (9%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERID---IFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
L E R +A R VD ++A + + + + + K + +M L +
Sbjct: 232 LCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDD 291
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T + + V+EA E+L + G PD TY ++++G C G A+EL NE
Sbjct: 292 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 351
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
A +G+ ++V L++ L E G P T+N VI LC +G
Sbjct: 352 AQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGN 411
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
I A +++ G +P + + LI
Sbjct: 412 ISDATVVMNDAIMKGYLPDVFTFNTLI 438
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 80/198 (40%), Gaps = 36/198 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-------------- 102
+ + N + ++G + + +N ++ L + A ++ +M G
Sbjct: 381 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 440
Query: 103 -----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+++ A +++ + G+ PD TY ++++G CK G+ NE E E I +G N
Sbjct: 441 YCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPN 500
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+T L++ + G P ++FN +I C G + A LL
Sbjct: 501 PITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQ 560
Query: 201 LMYEHGKIPSRTSHDMLI 218
+ E G + + + LI
Sbjct: 561 KLEEKGYSATADTFNTLI 578
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
+ N + K G V++ N+ +++ + + N ++EEA ++++ +
Sbjct: 472 VLNGLCKAG---KVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS 528
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------- 165
+GL PD ++ ++ GFC+ G A L + E+G + T L+
Sbjct: 529 QEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH 588
Query: 166 -------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L GH + T+ +I C + +A + L M + G IPS ++ +I
Sbjct: 589 MAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVI 648
Query: 219 KKL 221
L
Sbjct: 649 NSL 651
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 29/186 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L++ +D F + + +N ++ ALV D A K + L G
Sbjct: 63 RAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAG------ 116
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI------ 162
+ PD++T+T + FC R + A+ LL RG +
Sbjct: 117 ----------VSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHG 166
Query: 163 ------QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
QL ++ H+ P FN V+ ALC G + +A LLL + + G + +++
Sbjct: 167 HTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYN 226
Query: 216 MLIKKL 221
+ I+ L
Sbjct: 227 IWIRGL 232
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +A ++ + + + P++ + ++ CK G EA LL + I+RG++ N+ T
Sbjct: 166 GHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTY 225
Query: 162 ----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++L+ + +P +T+N +I+ LC +A+ L M
Sbjct: 226 NIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ 285
Query: 206 GKIPSRTSHDMLI 218
G +P +++ +I
Sbjct: 286 GCLPDDFTYNTII 298
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 34/151 (22%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F +++ G + + FN L+ A FS L + E+ ++ +++ G
Sbjct: 558 LFQKLEEKGYSATADTFNTLIGA-------------FSGKLNMHMAEKIFDEMLS---KG 601
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
+ D YTY ++DG CK + A L E I++G IP T
Sbjct: 602 HRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGF------------------IPSMST 643
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
F VI +L ++ +A+ ++ +M + G +P
Sbjct: 644 FGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 674
>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 641
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF + +V RV E E ++ G PDV TYT +++GFCK G +EA+ LL
Sbjct: 360 VDFFCQNGLVDRVIELLEQMLE---HGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSA 416
Query: 152 RGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHK 194
G N ++ +L+ L + G +P +TFN +I +C G + +
Sbjct: 417 CGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQ 476
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL M +G P S+ +I L +
Sbjct: 477 AIELLKQMLVNGCSPDLISYSTVIDGLGK 505
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G VE+A E+L + +G PD+ +Y+ ++DG K G++ EA+ELLN I +G+T N +
Sbjct: 472 GLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIY 531
Query: 161 ---------------LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+IQ+ ++ + +N VI +LC + +A+ M
Sbjct: 532 SSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVS 591
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G +P+ +++ +LI+ L +
Sbjct: 592 NGCMPNESTYTILIRGLASE 611
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA +L N+ G KP+ +YT ++ G C+ R +A EL++ I++G N VT
Sbjct: 402 GLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTF 461
Query: 162 ----------------IQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+LL Q L G P I+++ VI L GK +AL LL +M
Sbjct: 462 NTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMIN 521
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ + + L ++
Sbjct: 522 KGITPNTIIYSSMASALSRE 541
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 83/240 (34%), Gaps = 71/240 (29%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR--------- 103
+ E +++ + G + +N +L L M D + + VG
Sbjct: 194 VDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNT 253
Query: 104 ----------VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
E+ +E L + G PD+ Y I+DG CK G A ++L+ G
Sbjct: 254 LIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYG 313
Query: 154 VTQNVVT---------------------------------------------------LI 162
+ NVV +I
Sbjct: 314 LKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVI 373
Query: 163 QLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+LL Q LE G IP IT+ VI C G + +A++LL M G P+ S+ +++K L
Sbjct: 374 ELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGL 433
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 23/170 (13%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTA 128
F + AL +L+ + + + +L+V G V+E E+L + + G +PD+ +Y A
Sbjct: 159 FRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNA 218
Query: 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMG 171
++ G C R ++ EL+ E + G NV T L+ L E G
Sbjct: 219 VLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHG 278
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P + +I +C G A +L M +G P+ ++ ++K L
Sbjct: 279 CTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGL 328
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GRVE+A E L N+ + G +P+ +Y ++ G R +A +L+ E +G NVVT
Sbjct: 250 GRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTF 309
Query: 161 --LIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R + G P ++++N ++ A C KIHKA+ + LM
Sbjct: 310 NMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVS 369
Query: 205 HGKIPSRTSHDMLIKKL 221
G P S++ L+ L
Sbjct: 370 RGCYPDIVSYNTLLTAL 386
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A E+L +K+ G P + +Y ++DG K G++ EA+ELL+E +G+ +++T
Sbjct: 390 GEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITY 449
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L +MG P +N ++ LC + H A+ L M
Sbjct: 450 STIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMIS 509
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ +++ +L++ L
Sbjct: 510 SGCMPNESTYTILVEGL 526
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A ++L + + G PD+ TY +++G C+ GR +AME L G N V+ +
Sbjct: 218 KQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIV 277
Query: 165 LQRL--------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L+ L EM H P +TFN +I LC G + A+ +L M ++G
Sbjct: 278 LKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGC 337
Query: 208 IPSRTSHDMLIKKLDQQ 224
P+ S++ L+ +Q
Sbjct: 338 TPNSLSYNPLLHAFCKQ 354
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + G+++ A ++ ++ ++PD YTY ++ G C GR++ A+ +L + RG
Sbjct: 140 MVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRG 196
Query: 154 VTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
+VVT LL+ EM G P +T+N V+ +C G++ A+
Sbjct: 197 CLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAM 256
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L + +G P+ S+++++K L
Sbjct: 257 EFLKNLPSYGCEPNTVSYNIVLKGL 281
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 21/99 (21%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
PDV Y A++ G+C G+ + A L+ +M P T+N
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVA---------------------DMPVEPDAYTYN 170
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+I+ LCG G+ AL +L M+ G +P ++ +L++
Sbjct: 171 TLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLE 209
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 36/208 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV-------- 104
L+ +D+F + +G + +V + +L+ + D A+ FS + G V
Sbjct: 228 LELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTA 287
Query: 105 -----------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ AY +L +++N GL P+ +T + ++D CK R EA LL I++G
Sbjct: 288 LIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKG 347
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ N + L+ L G +P T++++I LC ++ +A+
Sbjct: 348 IKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAM 407
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L+L M E G PS ++ ++I +L ++
Sbjct: 408 LVLDDMMEKGVQPSPVTYTIIIDELVRE 435
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA + ++ DG PD + Y ++ G C GR+ EA LL++A+ G NVV
Sbjct: 156 GMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVY 215
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ + +R+++ G P T+ +I C K+ +A++L M +
Sbjct: 216 NALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVD 275
Query: 205 HGKIPSRTSHDMLIK 219
G +P+ ++ LI+
Sbjct: 276 AGLVPNVVTYTALIQ 290
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 17/123 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG +E A ++ + +G P+V TYT ++ GFCK + + AM L + ++ G+ NVVT
Sbjct: 225 VGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVT 284
Query: 161 ---LIQ-------------LLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LIQ LLQ +E G +P T + +I ALC ++ +A LLL +
Sbjct: 285 YTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLI 344
Query: 204 EHG 206
+ G
Sbjct: 345 QKG 347
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G+KPDV+TYT + +C GR +A ++ ++ GV N+V
Sbjct: 452 GIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLV------------------ 493
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+N +I +G +A M +G P+ S+ +L++ L
Sbjct: 494 TYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLL 537
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
++ SP+ I I +++ G + S D ++A + + T F ++ GR+E+A
Sbjct: 418 VQPSPVTYTIIIDELVREVGADGS-KKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDA 476
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
M++++ + G+ P++ TY A++ G+ +G +++A + G N + LL+
Sbjct: 477 EHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRL 536
Query: 168 L 168
L
Sbjct: 537 L 537
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 37/177 (20%)
Query: 63 IKKDGTN---------WSVSD---FNDLLMALVML---NEQDTAVKFFSNHLMVGRVEEA 107
IKK+ +N W +++ + LL +V L +E D F ++ V R++EA
Sbjct: 538 IKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEA 597
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+L+ +++ L P YT+I+ C++ EA+ ++ ++
Sbjct: 598 KILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKS--------------- 642
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM----YEHGKIPSRTSHDMLIKK 220
G+IP+ ++ ++I +LC G I A + M Y + +I R D L++K
Sbjct: 643 ---GYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQK 696
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 17/146 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + + G + + L ++ G PD + YT+ + G+C+ G A L
Sbjct: 74 TYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLM 133
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
RG + T LL L G P + ++ LCG G+
Sbjct: 134 PLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRT 193
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+A LL G P+ ++ LI
Sbjct: 194 REAETLLSDAMAEGFEPNVVVYNALI 219
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 34/180 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+ I +KK+G N +V +++ L+ GR+EEA E+ +K+
Sbjct: 292 LKIMEFMKKNGCNPNVFNYSALMNGFCK----------------EGRLEEAKEVFDEMKS 335
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--------------- 161
GLKPD YT +++ FC+ GR +EAMELL + E + VT
Sbjct: 336 LGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEE 395
Query: 162 -IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS-RTSHDMLI 218
+L+RL G ++ V+ +LC G++ KA L+ LM G +P TS+++L+
Sbjct: 396 ARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLV 455
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
+V+ A +++ +K +G P+V+ Y+A+M+GFCK GR EA E+ +E G+ + V
Sbjct: 287 KVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYT 346
Query: 160 TLIQLLQR-------LEMGHIPR-------TITFNNVIQALCGVGKIHKALLLLFLMYEH 205
TLI R +E+ R T+TFN ++ LC G+ +A +L +
Sbjct: 347 TLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYE 406
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G ++ S+ +++ L ++
Sbjct: 407 GVYLNKASYRIVLNSLCRE 425
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLK-PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+H G ++ A+E++ +K + P++ TY+ +++G C GR EA+EL E + +
Sbjct: 209 HHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKD-- 266
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q+L P +T+N +I C K+ +AL ++ M ++G P+ ++
Sbjct: 267 -------QIL--------PDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYS 311
Query: 216 MLI 218
L+
Sbjct: 312 ALM 314
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 18/122 (14%)
Query: 102 GRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++EA E+ V D + PD TY A+++GFC + + A++++ + G NV
Sbjct: 250 GRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFN 309
Query: 161 LIQLLQ------RLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ RLE +G P T+ + +I C G++ +A+ LL M
Sbjct: 310 YSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMR 369
Query: 204 EH 205
E+
Sbjct: 370 EN 371
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR EEA ML + +G+ + +Y +++ C+ G +A +L+ + RGV
Sbjct: 391 GRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGV------- 443
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+P T N ++ LC GK+ A++ L + E G P S +L++
Sbjct: 444 -----------LPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVE 490
>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
Length = 946
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RVEEA ++L + +G +P+ Y A++DG CKVG+ +EA E+ E E G + T
Sbjct: 613 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 672
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R LE P + + +I LC VGK +A L+ +M E
Sbjct: 673 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 732
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ +I
Sbjct: 733 GCQPNVVTYTAMI 745
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 20/137 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E A+ + +K GL DVYTYT ++D FCK G +A + NE E G T NVVT
Sbjct: 457 KMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYT 516
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G +P +T++ +I C G++ KA + M
Sbjct: 517 ALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGS 576
Query: 206 GKIPSRTSHDMLIKKLD 222
+P DM K+ D
Sbjct: 577 KDVPDV---DMYFKQYD 590
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+++EA E+ + G +YTY++++D + KV R + A ++L++ +E NVV
Sbjct: 646 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 705
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ L E G P +T+ +I +GKI L LL M
Sbjct: 706 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG 765
Query: 204 EHGKIPSRTSHDMLI 218
G P+ ++ +LI
Sbjct: 766 SKGVAPNYVTYRVLI 780
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ +EAY+++ ++ G +P+V TYTA++DGF +G+ +ELL +GV N VT
Sbjct: 716 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 775
Query: 161 ---LI-------------QLLQRLEMGHIP-RTITFNNVIQAL 186
LI LL+ ++ H P T + VI+
Sbjct: 776 YRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF 818
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 21/157 (13%)
Query: 80 MALVMLNEQDTAVKFFSNHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
M+L L ++ F+ L VG+ EA L V+ + PD YT ++ G C+
Sbjct: 220 MSLANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDTVFYTKLISGLCEASL 276
Query: 139 SNEAMELLNEAIERGVTQNVVT----LIQLLQRLEMGHIPRTIT-------------FNN 181
EAM+ LN NVVT L L + ++G R + FN+
Sbjct: 277 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 336
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ A C G A LL M + G +P +++LI
Sbjct: 337 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 373
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA + ++F ++ +G ++ ++ L+ + + A + F V +
Sbjct: 523 LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDV 582
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++ +P+V TY A++DGFCK R EA +LL+ G
Sbjct: 583 DMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCE------------ 630
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P I ++ +I LC VGK+ +A + M EHG + ++ LI +
Sbjct: 631 ------PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDR 677
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA +++ FN +++ G +V + L+ A +L +V A
Sbjct: 488 CKAGLIEQARKWFNEMREVGCTPNVVTYTALIHA----------------YLKAKKVSYA 531
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
E+ + ++G P++ TY+A++DG CK G+ +A ++ ER V + +
Sbjct: 532 NELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF----ERMCGSKDVPDVDMYFK 587
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
Q + P +T+ ++ C ++ +A LL M G P++ +D LI L
Sbjct: 588 QYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 643
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 52/174 (29%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE----------- 148
M+G++E E+L + + G+ P+ TY ++D CK G + A LL E
Sbjct: 750 MIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTA 809
Query: 149 ---AIERGVTQNVVTLIQLL-------------------------QRLEMGH-------- 172
+ G + + + LL QRLEM
Sbjct: 810 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT 869
Query: 173 -----IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + T+N++I++LC K+ A L M + G IP S LIK L
Sbjct: 870 FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 923
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 44/222 (19%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-----KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82
E+L L E + F K+ +AS +E +D N ++ +V ++ LL
Sbjct: 247 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 306
Query: 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
+ N +GR + M+M +G P + +++ +C G + A
Sbjct: 307 L-------------NKKQLGRCKRVLNMMMM---EGCYPSPKIFNSLVHAYCTSGDHSYA 350
Query: 143 MELLNEAIERG-----VTQNVVT-------------LIQLLQR-----LEMGHIPRTITF 179
+LL + ++ G V N++ L+ L ++ L G + I
Sbjct: 351 YKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINV 410
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ + LC GK KA ++ M G IP +++ ++ L
Sbjct: 411 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYL 452
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 35/175 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-----------------NHL 99
+D+F + + GT S+ N LL +LV NE + + F N L
Sbjct: 194 VDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVINAL 253
Query: 100 MVG-RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
G ++E A E+ M ++ G+ P+V TY I++G C+ GR + A EL + +GV N+
Sbjct: 254 CKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNL 313
Query: 159 VTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
T L+ L EM G P + FNN+I C +G I AL
Sbjct: 314 KTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGAL 368
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 25/200 (12%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWS--VSD----FNDLLMALVMLNEQDTAVKF 94
A + D+ KAS L I + I +G + + D FN+LL + LN +
Sbjct: 577 AIKLWDEFKASGLISNIHTY-GIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNI-I 634
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
H G V A ++L N+K+ G+ P+ TY++++ G C +G +A L++E + G
Sbjct: 635 IKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGF 694
Query: 155 TQNVVTLIQLL-QRLEMGHI----------------PRTITFNNVIQALCGVGKIHKALL 197
NVV L+ ++G + P T+ +I C +G + KA
Sbjct: 695 VPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANN 754
Query: 198 LLFLMYEHGKIPSRTSHDML 217
LL M E G +P ++++L
Sbjct: 755 LLIKMKESGIVPDVVTYNVL 774
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------ 154
VG++++A ++ K GL +++TY +M+G+CK R + L NE + + +
Sbjct: 571 VGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIV 630
Query: 155 ----------TQNVVTLIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
NV +QLL+ ++ G +P T++++I +C +G + A L+ M
Sbjct: 631 YNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMR 690
Query: 204 EHGKIPSRTSHDMLI 218
+ G +P+ + LI
Sbjct: 691 KEGFVPNVVCYTALI 705
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 25/138 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE + + + G++PD+YTY ++ G C VG+ ++A++L +E G+ N+ T
Sbjct: 537 GKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTY 596
Query: 162 IQLLQ---------------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+++ ++E+ +I +N +I+A C G + AL LL
Sbjct: 597 GIMMEGYCKANRIEDVENLFNELLSKKMEL----NSIVYNIIIKAHCQNGNVAAALQLLE 652
Query: 201 LMYEHGKIPSRTSHDMLI 218
M G +P+ ++ LI
Sbjct: 653 NMKSKGILPNCATYSSLI 670
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 23/139 (16%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-------VKF------FSNHLMV---- 101
+ + ++K+G +V + L+ L + DTA + F F+ +M+
Sbjct: 685 LIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYC 744
Query: 102 --GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G +E+A +L+ +K G+ PDV TY + +GFCK + A ++ ++ G+ + +
Sbjct: 745 KLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEI 804
Query: 160 TLIQLLQRLEMGHIPRTIT 178
T L+ G P TIT
Sbjct: 805 TYTTLVH----GWNPPTIT 819
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 28/139 (20%)
Query: 65 KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-----VGRVEEAYEMLMNVKNDGL 119
KDG + ++ + +L + A K SN L+ G++ EA ++ + GL
Sbjct: 465 KDGKHLEATE-----LWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGL 519
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179
D TY A++ GFC G+ L E +RG+ P T+
Sbjct: 520 PMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQ------------------PDIYTY 561
Query: 180 NNVIQALCGVGKIHKALLL 198
N +++ LC VGK+ A+ L
Sbjct: 562 NFLLRGLCNVGKLDDAIKL 580
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 21/138 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE--- 105
K ++ I++F ++K G + +V +N ++ L D A + + V V+
Sbjct: 255 KGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFEL-KEKMTVKGVQPNL 313
Query: 106 EAYEMLMN-----------------VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ Y L+N + G P+V + ++DG+CK+G A+++ +
Sbjct: 314 KTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDV 373
Query: 149 AIERGVTQNVVTLIQLLQ 166
I + +T VTL L+Q
Sbjct: 374 MISKNITPTSVTLYSLMQ 391
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R A+ + + +P T ++ G CK G+ EA EL
Sbjct: 433 RYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELW---------------- 476
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ LE G +T N +I LCG GK+ +A ++ M E G R +++ LI
Sbjct: 477 --FRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALI 530
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V++A +++ + GL+P+V TY +++ CK G EAM L N +E+GV + VT
Sbjct: 232 GKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTY 291
Query: 162 IQLLQRL--------------EMGHI-----PRTITFNNVIQALCGVGKIHKALLLLFLM 202
L+ L EM H P +TFN+VI LC G++ +A + +M
Sbjct: 292 NTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMM 351
Query: 203 YEHGKIPSRTSHDMLIKKL 221
E+G + + ++LI L
Sbjct: 352 AENGCACNLVTFNLLIGGL 370
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R +A +L +++ G++PDV TY ++ G C ++A+ELL E E G+ NVV
Sbjct: 128 RTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYS 187
Query: 163 QLLQ------RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LLQ R E G P + + +I +LC GK+ KA ++ M E
Sbjct: 188 CLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMER 247
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P+ ++++LI + ++
Sbjct: 248 GLEPNVVTYNVLINSMCKE 266
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A E+L + G++P+V Y+ ++ G+CK GR ++ E RG+ +VV
Sbjct: 164 VDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTG 223
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L E G P +T+N +I ++C G + +A+ L M E G
Sbjct: 224 LIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKG 283
Query: 207 KIPSRTSHDMLIKKL 221
+++ LI L
Sbjct: 284 VALDAVTYNTLITGL 298
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 22/157 (14%)
Query: 84 MLNEQDTAVKFFSNHLMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
M+ E A + +L++G +V++A E++ + + GL+PD +TY+ +++GFCK+
Sbjct: 350 MMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMW 409
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHIPRT---------------ITFNN 181
+ + A LL++ G+ +V I LL L E G + + + ++
Sbjct: 410 QVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYST 469
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+I C + A L M + G IP ++ MLI
Sbjct: 470 MIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLI 506
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 31/194 (15%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K +KE + + N++ + G +N L+ L + E D A+ G +EE
Sbjct: 264 CKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAM---------GLLEE- 313
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQL 164
M ++P+V T+ +++ G CK GR +A ++ + E G N+VT LI
Sbjct: 314 ----MIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGG 369
Query: 165 LQRL-----------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L R+ EM G P + T++ +I C + ++ +A LL M G P
Sbjct: 370 LLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPE 429
Query: 211 RTSHDMLIKKLDQQ 224
+ L+ L +Q
Sbjct: 430 LVHYIPLLAALCEQ 443
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +A L+ V +P +YT +M C R+ +A+ LL + GV
Sbjct: 92 GGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVR------ 145
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P +T+ +I+ LC + KA+ LL M E G P+ + L++
Sbjct: 146 ------------PDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQ 191
>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
Length = 628
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F S G++++ EML + G+ PDV T+ +I+ G CK R ++A ++ +ERG
Sbjct: 193 FISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERG 252
Query: 154 VTQNVVT-------------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
+ +T +++ +Q ++ G + T N I ALC GK
Sbjct: 253 CVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPL 312
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A +L M E G +P+ S++ +I L
Sbjct: 313 AKNILLGMIESGSLPNLLSYNFVIDGL 339
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 23/130 (17%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--------------- 161
+G V TYT ++DG CK G + A LL + + G NVVT
Sbjct: 4 NGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHD 63
Query: 162 -IQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI- 218
IQ ++R L G P +T+N++I LC ++ A L+L + +G P+ ++ L+
Sbjct: 64 AIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVI 123
Query: 219 -----KKLDQ 223
++LDQ
Sbjct: 124 WNCRRRRLDQ 133
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
M R+++A +L + +G P+ TY+ ++ C+ R ++A L+ E I RG N+
Sbjct: 91 CMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNL 150
Query: 159 VTLIQLL-------------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
V I + + +E G IP +T+N I LC GK+ K L +L
Sbjct: 151 VVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEML 210
Query: 200 FLMYEHGKIP 209
M + G IP
Sbjct: 211 EEM-DRGGIP 219
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G PDV TY + G CK G+ ++ +E+L E ++RG G P +
Sbjct: 182 GRIPDVVTYNTFISGLCKAGKLDKGLEMLEE-MDRG-----------------GIPPDVV 223
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
TF ++I LC +I A + M E G +P ++ +++ L +
Sbjct: 224 TFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSR 269
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLK-PDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
S GR+ +A+++L+ +K + PDV TY ++DG K G +A LL E
Sbjct: 371 LISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAV 430
Query: 153 GVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKA 195
G NVVT L+ EM G P IT+N V+ A G + KA
Sbjct: 431 GCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKA 490
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G V++A+++ + + G KPDV + ++ GFCK GR ++A +LL E + +
Sbjct: 343 GNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNIC----- 397
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P +T+N +I G + +A LLL M G P+ ++ LI
Sbjct: 398 ------------VPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALI 443
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +L ++ G KP+V TY A+++G+ K G EA L +E +G +++T
Sbjct: 415 GSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITY 474
Query: 162 IQLLQRLEMGHI-------------------PRTITFNNVIQALCGVGKIHKALLLLFLM 202
+L + P IT+ +I C + L LL M
Sbjct: 475 NTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEM 534
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G ++++LI KL
Sbjct: 535 TARGWSCDSYTYNVLIAKL 553
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 37/191 (19%)
Query: 55 ERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
E++D S+ K+ G +V +N L+ L N FS A E+
Sbjct: 544 EKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNN-------FSG---------AEEL 587
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-- 168
+ +G+ P+V TYTA++DG CK G ++ A+E+ N+ IE+G N++T L++ L
Sbjct: 588 CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQ 647
Query: 169 ---------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
G IP IT+ +I+A GK+ A L M + G P+ +
Sbjct: 648 EGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWT 707
Query: 214 HDMLIKKLDQQ 224
+ +LIK L +
Sbjct: 708 YGVLIKGLKNE 718
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G E+A+ + +++KN G +P+VYTYTA++ G C G A+ L + GV N VT
Sbjct: 333 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVT 392
Query: 161 ---LIQLL---QRLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI +L +R++ G P +T+N +I+ C +G KA+L++ M
Sbjct: 393 YNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452
Query: 204 EHGKIPSRTSHDMLIK 219
+ G + +++ +IK
Sbjct: 453 QRGHSANLVTYNTIIK 468
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 71/243 (29%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------------ 100
+K + N + ++G + ++ +N+++ +L + A+ +N L
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465
Query: 101 -------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
G A +L +++ G KPD ++YT ++ GFCK+ + A L NE ++ G
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525
Query: 154 VTQNVVT-------------------LIQLLQR--------------------------- 167
+ N VT L++ ++R
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585
Query: 168 ------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+E G P +T+ +I LC G AL + M E G +P+ ++ LI+ L
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645
Query: 222 DQQ 224
Q+
Sbjct: 646 GQE 648
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 25/184 (13%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQD----TAVKFFSNHLMVGRVEEAYEMLMNV 114
+ N++ KDG +V+D + +M V +E T H ++ A ++ +
Sbjct: 221 VINALCKDG---NVAD-AETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQM 276
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------TQNVVTLIQL--- 164
+G +P+ TY+ +++G C GR NEA +L+ E I G+ T ++ L +
Sbjct: 277 AKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCY 336
Query: 165 --LQRL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
RL G P T+ +I LC G + A+ L M G P+ +++ L
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 396
Query: 218 IKKL 221
I L
Sbjct: 397 INIL 400
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 22/132 (16%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M V + Y +++ +G++P++ Y A+++ CK G +A ++ + E ++ +
Sbjct: 195 MTAAVMDRYHRMLS---EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTF 251
Query: 160 TLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ Q + G P T+T++ +I LC G++++A L+ M
Sbjct: 252 TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 311
Query: 203 YEHGKIPSRTSH 214
HG +P T+H
Sbjct: 312 ILHGILP--TAH 321
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 37/191 (19%)
Query: 55 ERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
E++D S+ K+ G +V +N L+ L N FS A E+
Sbjct: 544 EKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNN-------FSG---------AEEL 587
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-- 168
+ +G+ P+V TYTA++DG CK G ++ A+E+ N+ IE+G N++T L++ L
Sbjct: 588 CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQ 647
Query: 169 ---------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
G IP IT+ +I+A GK+ A L M + G P+ +
Sbjct: 648 EGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWT 707
Query: 214 HDMLIKKLDQQ 224
+ +LIK L +
Sbjct: 708 YGVLIKGLKNE 718
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G E+A+ + +++KN G +P+VYTYTA++ G C G A+ L + GV N VT
Sbjct: 333 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVT 392
Query: 161 ---LIQLL---QRLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI +L +R++ G P +T+N +I+ C +G KA+L++ M
Sbjct: 393 YNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452
Query: 204 EHGKIPSRTSHDMLIK 219
+ G + +++ +IK
Sbjct: 453 QRGHSANLVTYNTIIK 468
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 71/243 (29%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------------ 100
+K + N + ++G + ++ +N+++ +L + A+ +N L
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465
Query: 101 -------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
G A +L +++ G KPD ++YT ++ GFCK+ + A L NE ++ G
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525
Query: 154 VTQNVVT-------------------LIQLLQR--------------------------- 167
+ N VT L++ ++R
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585
Query: 168 ------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+E G P +T+ +I LC G AL + M E G +P+ ++ LI+ L
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645
Query: 222 DQQ 224
Q+
Sbjct: 646 GQE 648
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALV---MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
+ N++ KDG +V+D ++ + M + T H ++ A ++ +
Sbjct: 221 VINALCKDG---NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------TQNVVTLIQL---- 164
+G +P+ TY+ +++G C GR NEA +L+ E I G+ T ++ L +
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYE 337
Query: 165 -LQRL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
RL G P T+ +I LC G + A+ L M G P+ +++ LI
Sbjct: 338 DAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 397
Query: 219 KKL 221
L
Sbjct: 398 NIL 400
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 22/132 (16%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M V + Y +++ +G++P++ Y A+++ CK G +A ++ + E ++ +
Sbjct: 195 MTAAVMDRYHRMLS---EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTF 251
Query: 160 TLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ Q + G P T+T++ +I LC G++++A L+ M
Sbjct: 252 TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 311
Query: 203 YEHGKIPSRTSH 214
HG +P T+H
Sbjct: 312 ILHGILP--TAH 321
>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 418
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K G SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + +A EL +E + G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A ++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYVPS 415
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 37/191 (19%)
Query: 55 ERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
E++D S+ K+ G +V +N L+ L N FS A E+
Sbjct: 544 EKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNN-------FSG---------AEEL 587
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-- 168
+ +G+ P+V TYTA++DG CK G ++ A+E+ N+ IE+G N++T L++ L
Sbjct: 588 CKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQ 647
Query: 169 ---------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
G IP IT+ +I+A GK+ A L M + G P+ +
Sbjct: 648 EGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWT 707
Query: 214 HDMLIKKLDQQ 224
+ +LIK L +
Sbjct: 708 YGVLIKGLKNE 718
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 17/136 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G E+A+ + +++KN G +P+VYTYTA++ G C G A+ L + GV N VT
Sbjct: 333 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVT 392
Query: 161 ---LIQLL---QRLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI +L +R++ G P +T+N +I+ C +G KA+L++ M
Sbjct: 393 YNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452
Query: 204 EHGKIPSRTSHDMLIK 219
+ G + +++ +IK
Sbjct: 453 QRGHSANLVTYNTIIK 468
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 71/243 (29%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------------ 100
+K + N + ++G + ++ +N+++ +L + A+ +N L
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465
Query: 101 -------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
G A +L +++ G KPD ++YT ++ GFCK+ + A L NE ++ G
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525
Query: 154 VTQNVVT-------------------LIQLLQR--------------------------- 167
+ N VT L++ ++R
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAE 585
Query: 168 ------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+E G P +T+ +I LC G AL + M E G +P+ ++ LI+ L
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645
Query: 222 DQQ 224
Q+
Sbjct: 646 GQE 648
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALV---MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
+ N++ KDG +V+D ++ + M + T H ++ A ++ +
Sbjct: 221 VINALCKDG---NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMA 277
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------TQNVVTLIQL---- 164
+G +P+ TY+ +++G C GR NEA +L+ E I G+ T ++ L +
Sbjct: 278 KEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYE 337
Query: 165 -LQRL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
RL G P T+ +I LC G + A+ L M G P+ +++ LI
Sbjct: 338 DAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALI 397
Query: 219 KKL 221
L
Sbjct: 398 NIL 400
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 22/132 (16%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M V + Y +++ +G++P++ Y A+++ CK G +A ++ + E ++ +
Sbjct: 195 MTAAVMDRYHRMLS---EGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTF 251
Query: 160 TLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ Q + G P T+T++ +I LC G++++A L+ M
Sbjct: 252 TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM 311
Query: 203 YEHGKIPSRTSH 214
HG +P T+H
Sbjct: 312 ILHGILP--TAH 321
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+ A+E+L + + G +P+ Y A++DGFCK G+ + A E+ + + G +V T
Sbjct: 628 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYT 687
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R L+ P +T+ +I LC +G+ KAL LL LM E
Sbjct: 688 SLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEK 747
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P+ ++ LI L Q
Sbjct: 748 GCSPNVVTYTALIDGLGQ 765
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE+A+ + +K G+ PDVYTYT ++D FCK G +A L E G + VVT
Sbjct: 472 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 531
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
L+ + ++ G P +T+ ++ LC G I KA
Sbjct: 532 ALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 582
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ A ++L + D P+V TYTA++DG C++G S +A++LL+ E+G + NVVT
Sbjct: 697 GRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTY 756
Query: 162 IQLLQRL 168
L+ L
Sbjct: 757 TALIDGL 763
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T +L +V +A ++ + + G +P+ TY A++DG CK G ++A E+ +
Sbjct: 529 TYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 588
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
I + + R + P +T+ ++ LC K+ A LL M G P
Sbjct: 589 IGTSDSADSDFYFPCEDRHTLA--PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEP 646
Query: 210 SRTSHDMLI 218
+ +D LI
Sbjct: 647 NHIVYDALI 655
>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 418
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV FN L+ + ++ +G + E + + ++ G
Sbjct: 158 VFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLNEGFRLKNAMQASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E ++ G+ N V+ L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLI 318
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V ++ +M+G+ K+G NE L N
Sbjct: 137 YFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNA 196
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
GV +V T L+ + L+ G +P +++F +I C G+
Sbjct: 197 MQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGR 256
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ A+ + M P +++ LI L
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + L+ M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYVPS 415
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +L+ E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418
>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Glycine max]
Length = 777
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 36/194 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN--------------- 97
L E D++++++KDG S N LL LV + + F++
Sbjct: 103 LDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGK 162
Query: 98 ----HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+M+ +++ +E++ ++ DG+ P V+ Y ++ G CKV R +A +L +E I+R
Sbjct: 163 AVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRN 222
Query: 154 VTQNVVTLIQLLQ-RLEMGHIPRT----------------ITFNNVIQALCGVGKIHKAL 196
+ N VT L+ ++G I +T+N+++ LCG G++ A
Sbjct: 223 MVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAR 282
Query: 197 LLLFLMYEHGKIPS 210
+L M G +P
Sbjct: 283 EVLLEMEGSGFLPG 296
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 45/168 (26%)
Query: 102 GRVEEAYEMLMNVKNDGLKP----------------------------DVYTYTAIMDGF 133
GRV++A E+L+ ++ G P D TY +++G
Sbjct: 276 GRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGL 335
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVT-----------------LIQLLQRLEMGHIPRT 176
C+VGR +A E+L + +E GVT + ++ ++ Q E G P
Sbjct: 336 CRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNR 395
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
ITFN VI C G++ A + M E G P+ +++ LI Q+
Sbjct: 396 ITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQK 443
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
S LK+ F+ + + G + ++ +N L+ L GRV++A ++
Sbjct: 514 SKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGR----------------NGRVKKAEDL 557
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV---------------T 155
+ + G PDV TY +++ G+ K + + +EL ++ G+
Sbjct: 558 FLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRK 617
Query: 156 QNVVTLIQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+ VVT+ ++ Q L+M +P +N +I + G + KA+ L M + G + ++
Sbjct: 618 EGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTY 677
Query: 215 DMLI 218
+ LI
Sbjct: 678 NSLI 681
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 17/145 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S G V+ A + + G+ P V TY ++++G+ + G E L+E + G+
Sbjct: 403 SKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIK 462
Query: 156 QNVVTL-----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
NV++ I L + G P +N +I+A C + K+ A
Sbjct: 463 PNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRF 522
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQ 223
M + G + +++ LI L +
Sbjct: 523 FDEMIQSGIDATLVTYNTLINGLGR 547
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV E ++ ++K GL P V TY ++ G C + N A E +ERG+ NV
Sbjct: 689 RVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMCY 748
Query: 163 QLLQRL 168
QL+ L
Sbjct: 749 QLISGL 754
>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
Length = 671
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 24/151 (15%)
Query: 80 MALVMLNEQ------DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
M LV + EQ +T H G + A+E++ +K +G P++YTY A++DGF
Sbjct: 343 MLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGF 402
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193
CK G+ EA ++L A +G+ + IT+ +I C G I
Sbjct: 403 CKKGKIQEAYKVLRMATSQGLKFD------------------KITYTILITEHCKQGHIT 444
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
AL L M E+G P ++ LI QQ
Sbjct: 445 YALDLFDRMVENGCCPDIEAYTSLISTYCQQ 475
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A+ +L + GLKP+VYT+T ++DG CK+G + A L + I+
Sbjct: 267 VKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIK------------ 314
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ P T+ +I C GK+ +A +LL M E G P+ ++ LI
Sbjct: 315 -----SSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 364
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EAY++L + GLK D TYT ++ CK G A++L + +E G ++
Sbjct: 406 GKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAY 465
Query: 162 IQLL-----QR------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ QR L +G +P T+ ++I C VG+ AL + M +
Sbjct: 466 TSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQ 525
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G ++ LI L ++
Sbjct: 526 NGCFADSITYGALISGLCKE 545
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ A +L+ + GLKP+ TYT ++ G CK G + A EL+N+ + G
Sbjct: 336 GKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGF------- 388
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P T+N VI C GKI +A +L + G + ++ +LI +
Sbjct: 389 -----------LPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEH 437
Query: 222 DQQ 224
+Q
Sbjct: 438 CKQ 440
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 34/169 (20%)
Query: 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE 105
+ K + +D+F+ + ++G + + L+ + + + KFF LM+G
Sbjct: 436 EHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG--- 492
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
L P TYT+++ G+CKVGRS A+ + ++ G +
Sbjct: 493 -------------LLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFAD-------- 531
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+IT+ +I LC ++ +A L M + +P +
Sbjct: 532 ----------SITYGALISGLCKESRLEEAKALYEGMLDKRLVPCEVTR 570
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 33/187 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L + +F +K+ G SV +N LL AL GRV A
Sbjct: 182 KVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCS----------------AGRVGAAR 225
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ + DG PD YTY+ +++G K GR EA ++ E ++RGV ++V LL L
Sbjct: 226 KLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATL 285
Query: 169 --------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
EM G P +FN ++ AL K A + M E G P
Sbjct: 286 AKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDL 345
Query: 212 TSHDMLI 218
S+++LI
Sbjct: 346 ISYNILI 352
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 20/149 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+++F G+++ A EM +K G +PD YTY +++ K GR EA + +E
Sbjct: 107 IRYFGRS---GQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLE 163
Query: 152 RGVTQNVVTLIQLLQ------RLEM-----------GHIPRTITFNNVIQALCGVGKIHK 194
RG+T N+ T L+ +L+M G P +T+N ++ ALC G++
Sbjct: 164 RGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGA 223
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A L M G P ++ L+ L +
Sbjct: 224 ARKLFHKMTGDGCSPDSYTYSTLVNGLGK 252
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 37/197 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K+ ++E +F + G + ++N LL L G ++ +
Sbjct: 252 KSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAK----------------AGNMDRVW 295
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LI--- 162
+++ + G PD +++ IMD K + + A E+ +E G ++++ LI
Sbjct: 296 KLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSY 355
Query: 163 ----------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
Q+L+ + E G IP T T+N++I L G++ +A +L M G P
Sbjct: 356 ARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDV 415
Query: 212 TSH----DMLIKKLDQQ 224
++ DML K+ + Q
Sbjct: 416 VTYNRLMDMLGKRGENQ 432
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 71 SVSDFNDLLMALVMLNEQDTA-----VKFFSN--HLMV--GRVEEAYEMLMNVKNDGLKP 121
S + F D A ML E A K +++ H + G+V+EA+ +L ++ G +P
Sbjct: 354 SYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRP 413
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
DV TY +MD K G + A L + ++GV + ++
Sbjct: 414 DVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLS 452
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE+A+++ +K +G+ PDVYTYT ++D FCKVG +A +E + G NVVT
Sbjct: 137 KVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYT 196
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKA 195
L+ L G +P +T+ +I C G+ KA
Sbjct: 197 ALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKA 246
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 46/247 (18%)
Query: 16 LVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
LVD ++ E+ DL E P + +D K L E ++F + G
Sbjct: 285 LVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHG 344
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------------MVGRVEEAY 108
+ +V ++ L+ L D A+K + L VG+ +EAY
Sbjct: 345 CSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAY 404
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LI--- 162
+++ ++ G P+V TYTA++DGF K GR + +ELL +G N +T LI
Sbjct: 405 RLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHC 464
Query: 163 ----------QLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+LL+ ++ + P+ I + VI+ + +L LL + E G +P
Sbjct: 465 CAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGF--SHEFVASLGLLAELSEDGSVPIL 522
Query: 212 TSHDMLI 218
+ +LI
Sbjct: 523 PVYKLLI 529
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
+N++L V+LN+ + F +G+ E+AY ++ + + G PD TY+ ++ C
Sbjct: 75 YNEMLEMGVVLNKVNVC-NFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLC 133
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTI 177
+ +A +L E G+T +V T LL R EM G P +
Sbjct: 134 NASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVV 193
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ +I A K+ +A + +M +G +P+ ++ LI
Sbjct: 194 TYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALI 234
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +++ + F+ +++DG +V + L+ A + + + R E +
Sbjct: 169 KVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRK-------------LSRANEIF 215
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL----NEAIE--------RGVTQ 156
EM+++ +G P++ TYTA++DG CK G + +A ++ N+ ++ R V
Sbjct: 216 EMMLS---NGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDS 272
Query: 157 -----NVVTLIQLLQRLEMGHI-----------------PRTITFNNVIQALCGVGKIHK 194
NVVT L+ L H P I ++ +I C VGK+ +
Sbjct: 273 ELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDE 332
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A + M HG P+ ++ LI KL
Sbjct: 333 AQEVFTKMLGHGCSPNVYTYSSLIDKL 359
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 29/141 (20%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCK---------VGRSNEAMELLNEAIERGVTQN 157
AY++L + G +P Y ++ G C +G + A NE +E GV N
Sbjct: 30 AYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVIGLAERA---YNEMLEMGVVLN 86
Query: 158 VVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V + + L EM G IP + T++ VI LC K+ KA L
Sbjct: 87 KVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQ 146
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M +G P ++ L+ +
Sbjct: 147 EMKRNGITPDVYTYTTLLDRF 167
>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
Length = 554
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 26/187 (13%)
Query: 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ------DTAVKFFSN 97
F+ IK+S K + + + G M LV + EQ +T
Sbjct: 301 FLKLIKSSSYKPNVHTYTVM--IGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGG 358
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H G + A+E++ +K +G P++YTY A++DGFCK G+ EA ++L A +G+ +
Sbjct: 359 HCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFD 418
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
IT+ +I C G I AL L M E+G P ++ L
Sbjct: 419 ------------------KITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSL 460
Query: 218 IKKLDQQ 224
I QQ
Sbjct: 461 ISTYCQQ 467
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A+ +L + GLKP+VYT+T ++DG CK+G + A L + I+
Sbjct: 259 VKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIK------------ 306
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ P T+ +I C GK+ +A +LL M E G P+ ++ LI
Sbjct: 307 -----SSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 356
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EAY++L + GLK D TYT ++ CK G A++L + +E G ++
Sbjct: 398 GKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAY 457
Query: 162 IQLL-----QR------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ QR L +G +P T+ ++I C VG+ AL + M +
Sbjct: 458 TSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQ 517
Query: 205 HG 206
+G
Sbjct: 518 NG 519
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Query: 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV 104
+ K + +D+F+ + ++G + + L+ + + + KFF LM+G
Sbjct: 427 TEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG-- 484
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
L P TYT+++ G+CKVGRS A+ + ++ G
Sbjct: 485 --------------LLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQNGC 520
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RVEEA ++L + +G +P+ Y A++DG CKVG+ +EA E+ E E G + T
Sbjct: 654 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 713
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R LE P + + +I LC VGK +A L+ +M E
Sbjct: 714 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 773
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ +I
Sbjct: 774 GCQPNVVTYTAMI 786
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 20/137 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E A+ + +K GL DVYTYT ++D FCK G +A + NE E G T NVVT
Sbjct: 498 KMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYT 557
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G +P +T++ +I C G++ KA + M
Sbjct: 558 ALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGS 617
Query: 206 GKIPSRTSHDMLIKKLD 222
+P DM K+ D
Sbjct: 618 KDVPDV---DMYFKQYD 631
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+++EA E+ + G +YTY++++D + KV R + A ++L++ +E NVV
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 746
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ L E G P +T+ +I +GKI L LL M
Sbjct: 747 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG 806
Query: 204 EHGKIPSRTSHDMLI 218
G P+ ++ +LI
Sbjct: 807 SKGVAPNYVTYRVLI 821
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 17/103 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ +EAY+++ ++ G +P+V TYTA++DGF +G+ +ELL +GV N VT
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816
Query: 161 ---LI-------------QLLQRLEMGHIP-RTITFNNVIQAL 186
LI LL+ ++ H P T + VI+
Sbjct: 817 YRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF 859
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 21/157 (13%)
Query: 80 MALVMLNEQDTAVKFFSNHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
M+L L ++ F+ L VG+ EA L V+ + PD YT ++ G C+
Sbjct: 261 MSLANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDTVFYTKLISGLCEASL 317
Query: 139 SNEAMELLNEAIERGVTQNVVT----LIQLLQRLEMGHIPRTIT-------------FNN 181
EAM+ LN NVVT L L + ++G R + FN+
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ A C G A LL M + G +P +++LI
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA + ++F ++ +G ++ ++ L+ + + A + F V +
Sbjct: 564 LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDV 623
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++ +P+V TY A++DGFCK R EA +LL+ G
Sbjct: 624 DMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCE------------ 671
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P I ++ +I LC VGK+ +A + M EHG + ++ LI +
Sbjct: 672 ------PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDR 718
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA +++ FN +++ G +V + L+ A +L +V A
Sbjct: 529 CKAGLIEQARKWFNEMREVGCTPNVVTYTALIHA----------------YLKAKKVSYA 572
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
E+ + ++G P++ TY+A++DG CK G+ +A ++ ER V + +
Sbjct: 573 NELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF----ERMCGSKDVPDVDMYFK 628
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
Q + P +T+ ++ C ++ +A LL M G P++ +D LI L
Sbjct: 629 QYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 684
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 52/174 (29%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE----------- 148
M+G++E E+L + + G+ P+ TY ++D CK G + A LL E
Sbjct: 791 MIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTA 850
Query: 149 ---AIERGVTQNVVTLIQLL-------------------------QRLEMGH-------- 172
+ G + + + LL QRLEM
Sbjct: 851 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT 910
Query: 173 -----IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + T+N++I++LC K+ A L M + G IP S LIK L
Sbjct: 911 FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 44/222 (19%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-----KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82
E+L L E + F K+ +AS +E +D N ++ +V ++ LL
Sbjct: 288 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347
Query: 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
+ N +GR + M+M +G P + +++ +C G + A
Sbjct: 348 L-------------NKKQLGRCKRVLNMMMM---EGCYPSPKIFNSLVHAYCTSGDHSYA 391
Query: 143 MELLNEAIERG-----VTQNVVT-------------LIQLLQR-----LEMGHIPRTITF 179
+LL + ++ G V N++ L+ L ++ L G + I
Sbjct: 392 YKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINV 451
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ + LC GK KA ++ M G IP +++ ++ L
Sbjct: 452 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYL 493
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 46/222 (20%)
Query: 37 RSL-QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV----------ML 85
RSL QAQRF +E +F + G + +V ++ L+ L +L
Sbjct: 60 RSLCQAQRF---------EEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELL 110
Query: 86 NE------QDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
NE Q V + S +G+++EA ++ + G PD Y ++DGF K
Sbjct: 111 NEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKK 170
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQR-----------------LEMGHIPRTITF 179
G EA L E +E+G V T LL L G +P TF
Sbjct: 171 GDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTF 230
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
NN++ C +G + +A L M G P S++ LI+ +
Sbjct: 231 NNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGM 272
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------- 100
+ + E ++ N + G +V + LL L + + AV FS +
Sbjct: 98 CRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDG 157
Query: 101 ------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G + EAY + + G P V+TY +++ GF + G L +
Sbjct: 158 VVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKD 217
Query: 149 AIERGVTQNVVTLIQLLQR--------------LEM---GHIPRTITFNNVIQALCGVGK 191
+ +G N+ T LL LEM G P +++N +I+ +C GK
Sbjct: 218 MLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGK 277
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
H+A LL M G P S+++LI
Sbjct: 278 PHEAQRLLREMIRSGVGPDIVSYNILI 304
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
+ND+L A + N T + R EEA + + G P+V++Y+ ++ G C
Sbjct: 40 YNDMLAAGCVPNTY-TYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLC 98
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI----------------PRTI 177
+ + +EA ELLNE I+ G NVVT LL L +MG + P +
Sbjct: 99 RGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGV 158
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+N +I G + +A L M E G IP+ +++ L+ ++
Sbjct: 159 VYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRK 205
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 36/197 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE--- 105
K + E +F + + G +V +N LL E F + L G V
Sbjct: 169 KKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIF 228
Query: 106 ----------------EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
EA+ + + +++ G PDV +Y ++ G C G+ +EA LL E
Sbjct: 229 TFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREM 288
Query: 150 IERGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKI 192
I GV ++V+ I+L + + G P +++ +I LC GK+
Sbjct: 289 IRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKV 348
Query: 193 HKALLLLFLMYEHGKIP 209
A ++ M +G P
Sbjct: 349 GAAFVVFKDMIANGSAP 365
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A ++ + GL+PD ++Y+ I+D C+ G+ A + + I G + +
Sbjct: 311 GALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVV 370
Query: 162 IQLLQRLEMG 171
I L+ L G
Sbjct: 371 IPLVIGLCRG 380
>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 418
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K G SV FN L+ + ++ +G + E
Sbjct: 147 VKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLNEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A L +E +++G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KFTYTTLI 318
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD +TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQR 409
Query: 205 HGKIPS 210
G PS
Sbjct: 410 DGYKPS 415
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSVVT 418
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 33/183 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+KE +++FN + + G +V +N ++ L AV F
Sbjct: 174 IKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKK--------------- 218
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----------LI 162
++ +G KPDV TY I+D CK N+AME L+E ++RG+ NV T L
Sbjct: 219 -MEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILG 277
Query: 163 QL-----LQRLEMGH--IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
QL L + +G +P T+T ++ LC G + +A L+ M E G P+ ++++
Sbjct: 278 QLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYN 337
Query: 216 MLI 218
L+
Sbjct: 338 ALM 340
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 37/182 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMVG-- 102
+F ++ + G ++S +N L+ + + A K F N L+ G
Sbjct: 320 VFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFC 379
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
R++EA +L + + L PD TY+ +M G C+ GR EA+ + E G+
Sbjct: 380 KSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGL----- 434
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+P +T++ ++ C G + +AL LL M E P+ H +LI+
Sbjct: 435 -------------LPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIE 481
Query: 220 KL 221
+
Sbjct: 482 GM 483
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 39/232 (16%)
Query: 32 LKENPRSLQAQ--RFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
++ NPR A+ +F+ K + + N + G +V N L+ L LN
Sbjct: 80 VRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHV 139
Query: 89 DTAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTAI 129
D AV +G +++EA E+ + G +P+V +Y I
Sbjct: 140 DFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTI 199
Query: 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGH 172
++G CK G ++ A+++ + + G +VVT ++ + L+ G
Sbjct: 200 INGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGI 259
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
P T+N ++ C +G++++A L M +P + +L+ L ++
Sbjct: 260 PPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKE 311
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA + + G++P++ TY A+MDG+C NEA ++ I +G V +
Sbjct: 312 GMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSY 371
Query: 162 IQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EM H P T+T++ ++Q LC G+ +AL + M
Sbjct: 372 NILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCS 431
Query: 205 HGKIPSRTSHDMLI 218
+G +P+ ++ +L+
Sbjct: 432 YGLLPNLVTYSILL 445
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+ G++E A E+ + DG++P + TYT ++ G K G S+EA +L + + G N
Sbjct: 484 FIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNS 543
Query: 159 VTLIQLLQ 166
+ ++Q
Sbjct: 544 CSYNVMIQ 551
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EAY++ +++DG P+ +Y ++ GF + S+ A+ L++E + + + N+ T
Sbjct: 522 GLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTF 581
Query: 162 IQLLQRLE 169
Q+L LE
Sbjct: 582 -QMLLDLE 588
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 23/143 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A ++L ++N G KPDV TY +++G CK GR +EA++ LN G NV+T
Sbjct: 267 VGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNI 326
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L+ L G P +TFN +I LC G + +A+ +L M HG
Sbjct: 327 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 386
Query: 207 KIPSRTSHDMLI------KKLDQ 223
P+ S++ L+ KK+D+
Sbjct: 387 CTPNSLSYNPLLHGFCKEKKMDR 409
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L IDI + G + +N LL + D A+++ N
Sbjct: 372 LGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT 431
Query: 99 LMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L+ G+V+ A E+L + + G P + TY ++DG KVG++ A++LL+E +G
Sbjct: 432 LLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKG 491
Query: 154 VTQNVVTLIQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKAL 196
+ +++T L+ L +G P IT+N+++ LC + +A+
Sbjct: 492 LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAI 551
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M P+ ++ +LI+ +
Sbjct: 552 DFLAYMISKRCKPTEATYTILIEGI 576
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA + L N+ + G +P+V T+ I+ C GR +A +LL++ + +G + +VVT
Sbjct: 300 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 359
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I +L+++ M G P ++++N ++ C K+ +A+ L +M
Sbjct: 360 NILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVS 419
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 420 RGCYPDIVTYNTLLTAL 436
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A E+L PDV TYT +++ CK +AM+LL+E +G +VVT
Sbjct: 230 GKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTY 289
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+ L + G P IT N +++++C G+ A LL M
Sbjct: 290 NVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLR 349
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G PS + ++LI L +Q
Sbjct: 350 KGCSPSVVTFNILINFLCRQ 369
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 72/134 (53%), Gaps = 18/134 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA---MELLNE--AIERGVTQ 156
G +E+ ++ L ++ G PD+ T+++ GFC++G++ +A ME+L + A+ +T
Sbjct: 128 GELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITY 187
Query: 157 NVV-----------TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
NV+ +Q+L R+ + P +T+N +++ LC GK+ +A+ +L +
Sbjct: 188 NVLISGYCKSGEIDNALQVLDRMNVA--PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQK 245
Query: 206 GKIPSRTSHDMLIK 219
P ++ +LI+
Sbjct: 246 ECYPDVITYTILIE 259
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 20/141 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G+ ++A ++ ++ G PDV TY ++ G+CK G + A+++L+ V +VVT
Sbjct: 162 IGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVT 218
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+L ++L+ P IT+ +I+A C + +A+ LL M
Sbjct: 219 YNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 278
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G P ++++LI + ++
Sbjct: 279 NKGSKPDVVTYNVLINGICKE 299
Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K + I + + +++ G + ++ L+ L + D A+KFF
Sbjct: 473 KVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAI 532
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N +M+G + + A + L + + KP TYT +++G G + EA++LLNE
Sbjct: 533 TYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 592
Query: 150 IERGVTQ 156
RG+ +
Sbjct: 593 CSRGLVK 599
>gi|357135887|ref|XP_003569539.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Brachypodium distachyon]
Length = 476
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E+A + N+ KPD +Y ++DG C+ R +A E+ +E + GV VVT
Sbjct: 179 IEDAVRLFRNIP----KPDACSYNTVIDGLCRRSRRADAQEIFSEMVANGVAPTVVTYTT 234
Query: 164 LLQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ L EMG I P +T++++I LC G+ AL LL M +
Sbjct: 235 VINWLARDGCLDDALKMFDEMGRIGIAPNVVTYSSLIDGLCKGGRAASALELLDRMAKEA 294
Query: 207 KIPSRTSHDMLIKKLDQQ 224
K+P+ ++ +I L ++
Sbjct: 295 KLPNTITYSSVINGLCKE 312
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 93/202 (46%), Gaps = 32/202 (15%)
Query: 50 ASPLKERIDIFNSIKK-DGTNWSV-----------SDFNDLLMALVMLNEQDTAVKFFS- 96
++P+++ + +F +I K D +++ +D ++ +V T V + +
Sbjct: 176 SAPIEDAVRLFRNIPKPDACSYNTVIDGLCRRSRRADAQEIFSEMVANGVAPTVVTYTTV 235
Query: 97 -NHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
N L G +++A +M + G+ P+V TY++++DG CK GR+ A+ELL+ +
Sbjct: 236 INWLARDGCLDDALKMFDEMGRIGIAPNVVTYSSLIDGLCKGGRAASALELLDRMAKEAK 295
Query: 155 TQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALL 197
N +T +++L R+ + G P F +I LCG G+ +A
Sbjct: 296 LPNTITYSSVINGLCKEDRLNEAMEVLDRMRLQGRKPDAGLFGKLIVGLCGAGRAVEAAN 355
Query: 198 LLFLMYEHGKIPSRTSHDMLIK 219
L M G P+R + + ++
Sbjct: 356 YLDEMVLSGVEPNRVTWSLHVR 377
>gi|359474405|ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Vitis vinifera]
Length = 638
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 19/130 (14%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T +K F N VGR+E+A ++ +K G P+V YT I+DG C+ G A+ELL E
Sbjct: 200 TMIKGFCN---VGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGE- 255
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+++ P +T+ ++IQ+ C GK+ +AL +L M G P
Sbjct: 256 ---------------MEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAP 300
Query: 210 SRTSHDMLIK 219
+R + +L+K
Sbjct: 301 NRVTVSILMK 310
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 51/193 (26%)
Query: 26 AAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
A E + +NPR++ ID+ + + +GT SV FN + L +L
Sbjct: 96 ACELFRINQNPRAI-----------------IDVIEAYRVEGTVVSVKTFN---VVLHLL 135
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
E A +EA +L + ++ D Y +++ FC+ G + A L
Sbjct: 136 REAKLA-------------DEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGL 182
Query: 146 LNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ E + LI L P IT+ +I+ C VG++ A L +M H
Sbjct: 183 MKE----------MGLIDLY--------PNMITYVTMIKGFCNVGRLEDACKLFKVMKGH 224
Query: 206 GKIPSRTSHDMLI 218
G P+ + +++
Sbjct: 225 GCSPNVVVYTVIL 237
>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial; Flags: Precursor
gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
Length = 987
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RVEEA ++L + +G +P+ Y A++DG CKVG+ +EA E+ E E G + T
Sbjct: 654 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 713
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R LE P + + +I LC VGK +A L+ +M E
Sbjct: 714 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 773
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ +I
Sbjct: 774 GCQPNVVTYTAMI 786
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 20/137 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E A+ + +K GL DVYTYT ++D FCK G +A + NE E G T NVVT
Sbjct: 498 KMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYT 557
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G +P +T++ +I C G++ KA + M
Sbjct: 558 ALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGS 617
Query: 206 GKIPSRTSHDMLIKKLD 222
+P DM K+ D
Sbjct: 618 KDVPDV---DMYFKQYD 631
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+++EA E+ + G +YTY++++D + KV R + A ++L++ +E NVV
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 746
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ L E G P +T+ +I +GKI L LL M
Sbjct: 747 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG 806
Query: 204 EHGKIPSRTSHDMLI 218
G P+ ++ +LI
Sbjct: 807 SKGVAPNYVTYRVLI 821
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 21/157 (13%)
Query: 80 MALVMLNEQDTAVKFFSNHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
M+L L ++ F+ L VG+ EA L V+ + PD YT ++ G C+
Sbjct: 261 MSLANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDTVFYTKLISGLCEASL 317
Query: 139 SNEAMELLNEAIERGVTQNVVT----LIQLLQRLEMGHIPRTIT-------------FNN 181
EAM+ LN NVVT L L + ++G R + FN+
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ A C G A LL M + G +P +++LI
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA + ++F ++ +G ++ ++ L+ + + A + F V +
Sbjct: 564 LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDV 623
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++ +P+V TY A++DGFCK R EA +LL+ G
Sbjct: 624 DMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCE------------ 671
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P I ++ +I LC VGK+ +A + M EHG + ++ LI +
Sbjct: 672 ------PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDR 718
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA +++ FN +++ G +V + L+ A +L +V A
Sbjct: 529 CKAGLIEQARKWFNEMREVGCTPNVVTYTALIHA----------------YLKAKKVSYA 572
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
E+ + ++G P++ TY+A++DG CK G+ +A ++ ER V + +
Sbjct: 573 NELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF----ERMCGSKDVPDVDMYFK 628
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
Q + P +T+ ++ C ++ +A LL M G P++ +D LI L
Sbjct: 629 QYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 684
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 52/174 (29%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE----------- 148
M+G++E E+L + + G+ P+ TY ++D CK G + A LL E
Sbjct: 791 MIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTA 850
Query: 149 ---AIERGVTQNVVTLIQLL-------------------------QRLEMGH-------- 172
+ G + + + LL QRLEM
Sbjct: 851 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT 910
Query: 173 -----IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + T+N++I++LC K+ A L M + G IP S LIK L
Sbjct: 911 FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 44/222 (19%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-----KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82
E+L L E + F K+ +AS +E +D N ++ +V ++ LL
Sbjct: 288 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347
Query: 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
+ N +GR + M+M +G P + +++ +C G + A
Sbjct: 348 L-------------NKKQLGRCKRVLNMMMM---EGCYPSPKIFNSLVHAYCTSGDHSYA 391
Query: 143 MELLNEAIERG-----VTQNVVT-------------LIQLLQR-----LEMGHIPRTITF 179
+LL + ++ G V N++ L+ L ++ L G + I
Sbjct: 392 YKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINV 451
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ + LC GK KA ++ M G IP +++ ++ L
Sbjct: 452 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYL 493
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 23/133 (17%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N LM G V EA ++ + G KPDV++Y+ +++G+C V R +EA +L NE I
Sbjct: 340 NSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIH 399
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+G+T P T+++ +I A C +GK+ +A L M+ +G +P
Sbjct: 400 QGLT------------------PNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDL 441
Query: 212 TSHDMLIKKLDQQ 224
++ +L++ +Q
Sbjct: 442 CTYSVLLEGFCKQ 454
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 37/188 (19%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHL--------------------MVGRVEEAYEM 110
+ FN LL A+V + + AV S + ++ V+ + +
Sbjct: 89 CIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSV 148
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-- 168
L V GL+P + T+T +++G CK G +A+EL ++ + RG +V T ++ L
Sbjct: 149 LAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCK 208
Query: 169 ---------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
E+G P +T++ +I +LC +++AL + M G P+ S
Sbjct: 209 MGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVS 268
Query: 214 HDMLIKKL 221
+ LI+ L
Sbjct: 269 YTSLIQGL 276
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 78 LLMALVMLNEQDTAVKFFS--NHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
+L ++ L Q T + F + N L G +A E+ ++ G +PDVYTYT I++G C
Sbjct: 148 VLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLC 207
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTI 177
K+G + A L+ + E G +VVT L+ L G P +
Sbjct: 208 KMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVV 267
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ ++IQ LC + +A +L M +P + +LI
Sbjct: 268 SYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLI 308
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 33/188 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ E +DIF+ +K G + +V + L+ L + R +EA ML
Sbjct: 247 VNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFS----------------RWKEASAMLN 290
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ--RLEM 170
+ + + PD+ T++ ++D FCK G EA +L E GV NV+T L+ L+M
Sbjct: 291 EMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQM 350
Query: 171 ---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
G P +++ +I C V +I +A L M G P+ S+
Sbjct: 351 EVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYT 410
Query: 216 MLIKKLDQ 223
LI Q
Sbjct: 411 TLIHAFCQ 418
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 17/146 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ + MV R++EA ++ + + GL P+ +YT ++ FC++G+ EA EL + G
Sbjct: 379 NGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYL 438
Query: 156 QNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLL 198
++ T LL+ + G++ P + + +I ++C G ++ A L
Sbjct: 439 PDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKL 498
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQQ 224
++ HG P + +I L ++
Sbjct: 499 FSELFVHGLQPDVQIYTTIINGLCKE 524
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 37/198 (18%)
Query: 48 IKASPLKERID----IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
I + +RID +FN + G + + L+ A L G+
Sbjct: 378 INGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQL----------------GK 421
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA E+ ++ +G PD+ TY+ +++GFCK G +A L + N+V
Sbjct: 422 LREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTI 481
Query: 164 LLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ + E+ G P + +I LC G + +AL M E G
Sbjct: 482 LIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDG 541
Query: 207 KIPSRTSHDMLIKKLDQQ 224
P+ S++++I+ Q
Sbjct: 542 CPPNEFSYNVIIRGFLQH 559
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN----EQDTAVKF----FSNHLM 100
+A L+E + + +++ G ++ +N L+ AL L+ QD K F+ ++M
Sbjct: 191 RAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVM 250
Query: 101 V-----------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G V++A ++L + G++P+V TY+A++DG CK + EA E+L E
Sbjct: 251 TFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEM 310
Query: 150 IERGVTQNVVT---LI-------------QLLQRLE-MGHIPRTITFNNVIQALCGVGKI 192
RGVT + T LI Q+L+R+ G P + ++++I A C GK+
Sbjct: 311 KTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKL 370
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A L M + K P +++ +I L
Sbjct: 371 LEAQKTLQEMRKQRKSPDVVTYNTVIDGL 399
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 28/194 (14%)
Query: 56 RIDIFNSIKKDGTNWSV-----SDFNDLLMALVMLNEQDTAV---KFFSNHLMVGRVEEA 107
R ++ S + D ++++ + DL AL +L E +A F++ ++ + A
Sbjct: 101 RSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANA 160
Query: 108 YEM---LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---L 161
++ + ++++ G P+V TYTA++ F + + EAM+LL E ERG N+VT L
Sbjct: 161 GDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVL 220
Query: 162 IQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ L +L M G P +TFN+++ C G + A LL +M G
Sbjct: 221 VDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGM 280
Query: 208 IPSRTSHDMLIKKL 221
P+ ++ LI L
Sbjct: 281 RPNVVTYSALIDGL 294
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
EA ++L + G PDV TYT I+DG CK GR EA LL G NVVT L+
Sbjct: 443 EAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLI 502
Query: 166 QRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
L EM G P +T+N ++ LC G+I +A L+ M
Sbjct: 503 SGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRM 556
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVT 160
G++ EA + L ++ PDV TY ++DG CK+G+ EA +L + E G V +VVT
Sbjct: 368 GKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVT 427
Query: 161 LI----------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+LL R+ + G P +T+ +I LC G++ +A LL M
Sbjct: 428 YSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMK 487
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P+ ++ LI L
Sbjct: 488 RAGCAPNVVTYTTLISGL 505
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 39/229 (17%)
Query: 7 NSPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD 66
+S P+S + P SP + S PR + R V+ +K + L +
Sbjct: 21 HSGRPWSAI---EPDLSPFSGAS----TTPRIVG--RVVNSLKDAKLALAFFRWAPASIP 71
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G + + +N LL LV + A F + L+ +PDV +Y
Sbjct: 72 GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLAS----------------CEPDVCSY 115
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EMGH 172
++ GFC G + A+ELL E G + T ++ + MG
Sbjct: 116 NIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGC 175
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ +I A K+ +A+ LL M E G P+ ++++L+ L
Sbjct: 176 DPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDAL 224
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 34/213 (15%)
Query: 27 AESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
++ ++ K NP + +D K L E +F+ + + + ++ +N L+ M
Sbjct: 315 SDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 374
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
+ D A + F+ LMV + D L PDV TY ++ GFCK R E MEL
Sbjct: 375 DRLDEAQQIFT--LMVSK-------------DCL-PDVVTYNTLIKGFCKAKRVEEGMEL 418
Query: 146 LNEAIERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCG 188
E +RG+ N VT L+Q L G P IT++ ++ LC
Sbjct: 419 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 478
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
GK+ KAL++ + + P+ +++++I+ +
Sbjct: 479 YGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGM 511
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 17/133 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A+++ ++ G+KPDV+TY +++ C GR ++A LL++ IER + NVVT
Sbjct: 272 MDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNS 331
Query: 164 LL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ + ++ P +T+N++I C ++ +A + LM
Sbjct: 332 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 391
Query: 207 KIPSRTSHDMLIK 219
+P +++ LIK
Sbjct: 392 CLPDVVTYNTLIK 404
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 33/192 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + + D+FN ++ G V +N L+ L N+ GR +A
Sbjct: 268 KYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLC-------------NY---GRWSDAS 311
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-- 166
+L ++ + P+V T+ +++D F K G+ EA +L +E I+R + N+VT L+
Sbjct: 312 RLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGF 371
Query: 167 ----RLEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
RL+ +P +T+N +I+ C ++ + + L M + G + +
Sbjct: 372 CMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 431
Query: 212 TSHDMLIKKLDQ 223
+++ LI+ L Q
Sbjct: 432 VTYNTLIQGLFQ 443
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL--------- 99
KA ++E +++F + + G + +N L+ L + D A K F +
Sbjct: 408 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 467
Query: 100 ----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G++E+A + ++ ++P++YTY +++G CK G+ + +L
Sbjct: 468 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSL 527
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+GV NV I + +I C G +A L M E G +P
Sbjct: 528 SLKGVKPNV------------------IIYTTMISGFCRKGLKEEADALFREMKEDGTLP 569
Query: 210 SRTSHDMLIK 219
++ LI+
Sbjct: 570 DSGCYNTLIR 579
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L + + +F + K S+ +F+ LL A+ +N+ D +
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQ--------------- 106
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------- 165
++N G+ + YTY+ +++ FC+ + A+ +L + ++ G ++VTL LL
Sbjct: 107 -MQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK 165
Query: 166 ----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q +EMG+ P T+TFN +I L K +A+ L+ M G P ++
Sbjct: 166 RISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYG 225
Query: 216 MLIKKLDQQ 224
++ L ++
Sbjct: 226 TVVNGLCKR 234
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 33/167 (19%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
FN L+ L + N+ AV MV R G +PD++TY +++G C
Sbjct: 189 FNTLIHGLFLHNKASEAVALIDR--MVAR--------------GCQPDLFTYGTVVNGLC 232
Query: 135 KVGRSNEAMELLNEAIERGVTQNVV---TLI-------------QLLQRLEMGHI-PRTI 177
K G + A+ LL + + + NVV T+I L ++E I P
Sbjct: 233 KRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVF 292
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
T+N++I LC G+ A LL M E P+ + + LI ++
Sbjct: 293 TYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKE 339
>gi|302785101|ref|XP_002974322.1| hypothetical protein SELMODRAFT_30949 [Selaginella moellendorffii]
gi|300157920|gb|EFJ24544.1| hypothetical protein SELMODRAFT_30949 [Selaginella moellendorffii]
Length = 522
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 29/188 (15%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA + E D + ++K SV +N L+ LV D A++ FS + +EA
Sbjct: 12 CKAGKISEATDHYQRLRKSLRFLSVVVYNSLIDGLVKAKLVDKALEIFSRDM-----DEA 66
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQL 164
+P+ +TY A++ G CK GR EA EL + IER T +VV T+I
Sbjct: 67 L----------CQPNSHTYGALVSGLCKAGRIAEACELFQQMIERRYTPHVVLYTTVIDG 116
Query: 165 LQR----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTS 213
L + LE P +T++ I LC VGK+ A LL + E G P
Sbjct: 117 LCKARQFDKACSYLEKMESPDIVTYSAFIDGLCNVGKVDYAFELLKQIQERGNARPDVVL 176
Query: 214 HDMLIKKL 221
+ + IK L
Sbjct: 177 YTIFIKGL 184
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 35/197 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA + +++F ++ G + +N L+ AL D A + F+ + G
Sbjct: 185 CKAGQVDNAVELFYKMEDIGCPPNAVTYNSLMRALAWHKSVDAARRLFTEMIRKG----- 239
Query: 108 YEMLMNVKNDGLK-PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---VVTLIQ 163
+ DG P V Y ++ F + R+ E EL+ + + RG + N TL++
Sbjct: 240 ------CEPDGATYPTVGMYATLVRAFLRDERAMEVDELVKDMVRRGCSINHHLWDTLVR 293
Query: 164 LL--------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+L Q LE G +T+ +I+ L +GK+ KAL M EHGK P
Sbjct: 294 MLFTSGKLKISLTVAEQALERGCEIHVLTYYEIIRGLVRLGKVSKALAQFQKMVEHGK-P 352
Query: 210 SRTS-----HDMLIKKL 221
+ + H L+ KL
Sbjct: 353 TLSRQMAMVHSSLVTKL 369
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T F VG+V+ A+E+L ++ G +PDV YT + G CK G+ + A+EL +
Sbjct: 140 TYSAFIDGLCNVGKVDYAFELLKQIQERGNARPDVVLYTIFIKGLCKAGQVDNAVELFYK 199
Query: 149 AIERGVTQNVVTLIQLLQRL 168
+ G N VT L++ L
Sbjct: 200 MEDIGCPPNAVTYNSLMRAL 219
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 18/108 (16%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+DT + G ++EAY L KP +Y ++ C++GR+ EA +L
Sbjct: 429 RDTYRVLLEGYCQAGMLDEAYGALEETVARQFKPTGASYLELIRKLCELGRTEEAHHIL- 487
Query: 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
Q +V+L GH P +++N V QA G+ A
Sbjct: 488 --------QRMVSL---------GHRPLLLSYNAVFQAYYESGRFANA 518
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 17/144 (11%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+++ G ++EA ++L + + GL+PD +TY I G CK G+ + A E + RG +
Sbjct: 125 YILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPD 184
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V+T LL+ L G P +T++ +I +LC GKI +++ L+
Sbjct: 185 VITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVK 244
Query: 201 LMYEHGKIPSRTSHDMLIKKLDQQ 224
+M E G P +D LI ++
Sbjct: 245 VMKEKGLTPDAYCYDPLIAAFCRE 268
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++EE+ ++ +K GL PD Y Y ++ FC+ G+ + A+E L+ I G ++V
Sbjct: 234 GKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNY 293
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++ +L E+G P ++N ++ AL G ++AL ++ M
Sbjct: 294 NTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLS 353
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ LI L
Sbjct: 354 KGIDPDVITYNSLISCL 370
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 24/150 (16%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------- 148
S R+E A +L +K G PDV T+ ++ FC G+ + A+++ E
Sbjct: 52 SGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNC 111
Query: 149 --------------AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
+E G+ + + L ++L R G P T T+N + + LC GK+ +
Sbjct: 112 KPTLITYTILIEAYILEGGIDEALKLLDEMLSR---GLEPDTFTYNVITRGLCKEGKVDR 168
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A + + G P ++++L++ L Q
Sbjct: 169 AFEFVRTLNSRGCKPDVITYNILLRALLNQ 198
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 34/165 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
++IF + + G +VS +N +L AL ++ A+ S L +
Sbjct: 310 VEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQML----------------S 353
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G+ PDV TY +++ C+ G +EA+ LL + L R + P
Sbjct: 354 KGIDPDVITYNSLISCLCRDGMVDEAIGLLAD--------------MLSGRFQ----PNI 395
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+++ V+ LC +I A+ +L M E+G P+ T++ +LI+ +
Sbjct: 396 VSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGI 440
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-IQLLQRLEMGHI----- 173
KPDV+ Y A++ GFCK R A +L+ +G + +VVT I + G I
Sbjct: 41 KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALK 100
Query: 174 ------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P IT+ +I+A G I +AL LL M G P +++++ + L
Sbjct: 101 VFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGL 160
Query: 222 DQQ 224
++
Sbjct: 161 CKE 163
>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 418
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K G SV FN L+ + ++ +G + E
Sbjct: 147 VKEGEIRLAQSVFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLNEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A L +E +++G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KFTYTTLI 318
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD +TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G PS
Sbjct: 410 DGYKPS 415
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418
>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 579
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA++++ + G++P+V TYTA+MDG C + +EA+++ + + +G NV++
Sbjct: 285 GKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISY 344
Query: 162 IQL------LQRL--------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L +QR+ EM IP T+T++ +I LC V ++ A+ L M
Sbjct: 345 NTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVA 404
Query: 205 HGKIPSRTSHDMLIKKL 221
+IP+ ++ +L+ L
Sbjct: 405 CSQIPNLVTYRILLDYL 421
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 106/282 (37%), Gaps = 72/282 (25%)
Query: 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVS 73
+++ PS PS + L L + SL RF K + + + I FN + + S
Sbjct: 3 MIMRRPSSRPSGTQMLSLLAHFLSLSHNRFHSKSLHFNTIDGAISSFNRMLRMQPPPSTV 62
Query: 74 DFNDLLMALVMLNEQDTAVKF-------------FSNHLMV------------------- 101
DFN LL ++ + T + ++ H+++
Sbjct: 63 DFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKI 122
Query: 102 ----------------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
G++ EA + + +G +PDV TY +++G CKVG +
Sbjct: 123 LKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNT 182
Query: 140 NEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNV 182
+ A+ LL +++ NV ++ L EM G P T+N++
Sbjct: 183 SAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSL 242
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
I ALC + + LL M + +P S + ++ L ++
Sbjct: 243 IHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKE 284
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G +E A ++ N+ + GL+PDV+TY+ +++G C+ G +EA +L E E G T N
Sbjct: 460 GELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLN 515
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++EA +L +++ GL D TYT ++DG+CKVG+ EA + N+ +++ VT NVVT
Sbjct: 403 AGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT 462
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L L EM G T+N++I LC G + +A+ + M
Sbjct: 463 YTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMD 522
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
E G P ++ +I L Q
Sbjct: 523 EAGLKPDVYTYTTIIGALCQ 542
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +E+A ++++ GLKPDVYTYT I+ C+ + A LL E +++G+
Sbjct: 508 AGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIK----- 562
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +T+N ++ C G++ LL M E P+ T+++ L+K+
Sbjct: 563 -------------PTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + VG++ EA+ + + + P+V TYTA+ DG CK G A ELL+E
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM 486
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+G+ N+ T L+ L E G P T+ +I ALC ++
Sbjct: 487 CSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKEL 546
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+A LL M + G P+ ++++L+
Sbjct: 547 DRAHSLLQEMLDKGIKPTIVTYNVLM 572
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 41/157 (26%)
Query: 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111
PL E + +F + + T +N LL AL GR+++A+++
Sbjct: 237 PLDEAVQLFQELPEKNT----CSYNILLKALCT----------------AGRIKDAHQLF 276
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171
+ + PDV TY ++ G+C + A++LL+E RG+ N V
Sbjct: 277 DEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPV------------ 321
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ +VI LC G++ A+ ++ M HG +
Sbjct: 322 ------AYTSVIALLCDEGQVSDAVRVVEDMVMHGVV 352
>gi|296084709|emb|CBI25851.3| unnamed protein product [Vitis vinifera]
Length = 528
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 19/130 (14%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T +K F N VGR+E+A ++ +K G P+V YT I+DG C+ G A+ELL E
Sbjct: 206 TMIKGFCN---VGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGE- 261
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+++ P +T+ ++IQ+ C GK+ +AL +L M G P
Sbjct: 262 ---------------MEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAP 306
Query: 210 SRTSHDMLIK 219
+R + +L+K
Sbjct: 307 NRVTVSILMK 316
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 51/193 (26%)
Query: 26 AAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
A E + +NPR++ ID+ + + +GT SV FN + L +L
Sbjct: 102 ACELFRINQNPRAI-----------------IDVIEAYRVEGTVVSVKTFN---VVLHLL 141
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
E A +EA +L + ++ D Y +++ FC+ G + A L
Sbjct: 142 REAKLA-------------DEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGL 188
Query: 146 LNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ E + LI L P IT+ +I+ C VG++ A L +M H
Sbjct: 189 MKE----------MGLIDLY--------PNMITYVTMIKGFCNVGRLEDACKLFKVMKGH 230
Query: 206 GKIPSRTSHDMLI 218
G P+ + +++
Sbjct: 231 GCSPNVVVYTVIL 243
>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
Length = 509
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 18/122 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++AY +L ++ G PDV TYTAI+D FCKVGR +EA EL ERG +VV
Sbjct: 381 RLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVV--- 437
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
+N +I+ C K+ +A+ ++ M G P+ S ++ L
Sbjct: 438 ---------------AYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLC 482
Query: 223 QQ 224
++
Sbjct: 483 KE 484
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA + + +++ +K G ++ F L+ L LN D A++ F H M+
Sbjct: 63 CKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIF--HQMI------ 114
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ +KPD + YT ++ CK+ + + A ++ G + VT L+
Sbjct: 115 --------DMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHS 166
Query: 168 L--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L EM GH P +T+ V+ C G+I +AL L+ + G+ PS
Sbjct: 167 LFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPS 226
Query: 211 RTSHDMLIKKL 221
+ + LI L
Sbjct: 227 GSLYSTLIDGL 237
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA---------------- 91
KA + + + + +K G + S S ++ L+ L + D A
Sbjct: 203 CKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELFEMAAGDVQDVIV 262
Query: 92 -VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
F S G+++EA + + + G PD +Y I+ CK R +EA EL+++A+
Sbjct: 263 YTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAM 322
Query: 151 ER----GV------------TQNVVTLIQLLQR-LEMG-HIPRTITFNNVIQALCGVGKI 192
ER GV ++ V +L+R LE G P +T++ VI LC ++
Sbjct: 323 ERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRL 382
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
A ++L M G +P ++ +I
Sbjct: 383 DDAYVVLQKMRRAGCVPDVVTYTAII 408
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 19/118 (16%)
Query: 103 RVEEAYEMLMNVKNDGLK-PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
RVEEA +L + G + P V TY+A++DG CK R ++A +
Sbjct: 345 RVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAY----------------VV 388
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+Q ++R G +P +T+ +I A C VG++ +A L M+E G ++++LI+
Sbjct: 389 LQKMRR--AGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIR 444
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + GR+++A ++ +K G P Y+ ++DG CK R +EA EL A
Sbjct: 194 TYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELFEMA 253
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
G + I + + I LC GK+ +A + M E G P
Sbjct: 254 --------------------AGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAP 293
Query: 210 SRTSHDMLIKKL 221
S++++I L
Sbjct: 294 DPVSYNVIIYSL 305
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G EAY + + +PD +TY ++ GFCK + +A+ LL E G+T +VT
Sbjct: 31 GCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTF 90
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+++L +M P + VI LC + K+ A M +
Sbjct: 91 GSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQ 150
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P + ++ +L+ L
Sbjct: 151 SGCLPDKVTYTVLVHSL 167
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 31/168 (18%)
Query: 11 PFSVLLVDSPSRSPSAAESLDLKEN--------PRSLQAQRFVDKI-KASPLKERIDIFN 61
P +LVD +S E+ + E P + +D + KA L + +
Sbjct: 331 PVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQ 390
Query: 62 SIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------------------NHLMVG 102
+++ G V + ++ A + D A + F +
Sbjct: 391 KMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAA 450
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA---MELLN 147
+V+EA M+ + G++P+V + + I+DG CK R EA ME +N
Sbjct: 451 KVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKMN 498
>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 809
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 36/202 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN------------HLM 100
L E ID+F +++ G + + + L + D K + + +
Sbjct: 235 LAEAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTV 294
Query: 101 VGR-------VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
V R ++EA +L ++ G PDVY Y A++ G+C VG +A+ L +E + +G
Sbjct: 295 VIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKG 354
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
V N V L +LQ L +MG +N V+ ALC +GK+ +A+
Sbjct: 355 VKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAV 414
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
LL M +P ++ +I
Sbjct: 415 ELLVEMKGKKMVPDIINYTTVI 436
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 37/155 (23%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNHLM 100
F KK G + + +N ++ AL L + + AV+ S + +
Sbjct: 382 FKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFL 441
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+V +A + +K+ G KPD+ TY + GF + G + EA+ LLN +GV
Sbjct: 442 KGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVK----- 496
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
P T+T N +I+ LC GK+ A
Sbjct: 497 -------------PDTVTHNMIIEGLCIGGKVDDA 518
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 20/103 (19%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
+K+ +KPDV YT ++D CK +A+ L NE I+RG+
Sbjct: 711 MKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLA------------------ 752
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P T+T+ ++ C VG I KA++L M G P +H M
Sbjct: 753 PDTVTYTALLSGYCNVGNIKKAVVLFDEMLNKGIRPD--AHTM 793
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 78 LLMALVMLNEQDTAV---KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
LL +V LN T + K G +E+A + + + GL PDV TYT +++G+C
Sbjct: 587 LLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYC 646
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
++ + EA +L + RG+ +V+T LL
Sbjct: 647 RMNKMKEAWHVLGDMKNRGIEPDVITYTVLL 677
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 88 QDTAVKFFSNHLMVGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
Q + F N L+ R V+ A + +K GL P+ YTYT + GFC+ G EA+++
Sbjct: 183 QILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVF 242
Query: 147 NEAIERGVTQN---VVTLIQ-------------LLQRLEMGHIPRTI-TFNNVIQALCGV 189
+ E GVT N T I+ +LQ + IP + + VI+ C
Sbjct: 243 RDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSE 302
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
K+ +A +L M + G P + LI
Sbjct: 303 MKLKEAESILREMEKQGFAPDVYVYCALI 331
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H +++A + + + GL PD TYTA++ G+C VG +A+ L +E + +G+ +
Sbjct: 730 HCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVLFDEMLNKGIRPD 789
Query: 158 VVTL 161
T+
Sbjct: 790 AHTM 793
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EA +L ++ G+KPD T+ I++G C G+ ++A + +E +N +
Sbjct: 478 GLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDN-LEEKCLENYSAM 536
Query: 162 IQ-------------LLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ LL RL + G I + +F ++ LC G KAL LL M
Sbjct: 537 VNGYCEANHVNKAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNI 596
Query: 208 IPSRTSHDMLIKKLDQ 223
P+ + +I L Q
Sbjct: 597 NPTMIMYSKVIGALFQ 612
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 18/124 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG++E+A +L +K GLKPD TYT++++ C+ G+S+EA+ELL E E G +
Sbjct: 353 VGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQAD--- 409
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
++TFN ++ LC GK +AL ++ + + G ++ S+ +++
Sbjct: 410 ---------------SVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNS 454
Query: 221 LDQQ 224
L Q+
Sbjct: 455 LTQK 458
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 20/126 (15%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLK-PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H G ++ A+E++ ++N P++ TY+ +MDG C+ GR EA +L E + R
Sbjct: 243 HCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSR---- 298
Query: 157 NVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
HI P +T+N +I C GK +A ++ M +G P+ ++
Sbjct: 299 --------------DHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYS 344
Query: 216 MLIKKL 221
L+ L
Sbjct: 345 ALVDGL 350
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 34/164 (20%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E I++ +K++G FN LL L G+ EEA +M+ +
Sbjct: 393 EAIELLEEMKENGCQADSVTFNVLLGGLCR----------------EGKFEEALDMVEKL 436
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
G+ + +Y +++ + A ELL + RG P
Sbjct: 437 PQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQ------------------P 478
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T N ++ LC G + A + LF + E G P + ++LI
Sbjct: 479 HYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPGLETWEVLI 522
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A+ + ++ G K D+ TY ++ GFC GR ++ +LL + I+R ++ NVVT
Sbjct: 277 GSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTF 336
Query: 162 I----------------QLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
QLL+ ++ G P TIT+N++I C ++ +A+ ++ LM
Sbjct: 337 SVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMIS 396
Query: 205 HGKIPSRTSHDMLI 218
G P + ++LI
Sbjct: 397 KGCDPDIMTFNILI 410
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+EEA +M+ + + G PD+ T+ +++G+CK R ++ +EL E RGV N
Sbjct: 383 RLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIAN----- 437
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+T+N ++Q C GK+ A L M P S+ +L+ L
Sbjct: 438 -------------TVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGL 483
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 35/181 (19%)
Query: 44 FVDKIKASPLKERID---IFNSIKKDGTNWSVSDFNDLLMALV-MLNEQDTAVKFFSNHL 99
F D I++ PL ID +F++I K + +L++AL + + A ++ +
Sbjct: 76 FRDMIQSRPLPTVIDFNRLFSAIAK-------TKQYELVLALCKQMESKGIAHSIYTLSI 128
Query: 100 MVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
M+ ++ A+ + + G +PD + +++G C R +EA+EL++ +E
Sbjct: 129 MINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVE-- 186
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
MGH P IT N ++ LC GK+ A++L+ M E G P+ +
Sbjct: 187 ----------------MGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVT 230
Query: 214 H 214
+
Sbjct: 231 Y 231
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V +A ++ + G +P+ TY +++ CK G++ AMELL + ER + + V
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L +E+ G IT+N +I C G+ LL M +
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 205 HGKIPSRTSHDMLI 218
P+ + +LI
Sbjct: 327 RKISPNVVTFSVLI 340
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV EA E++ + G KP + T +++G C G+ ++A+ L++ +E G N VT
Sbjct: 173 RVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYG 232
Query: 162 ---------------IQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++LL+++E +I + ++ +I LC G + A L M
Sbjct: 233 PVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK 292
Query: 206 GKIPSRTSHDMLI 218
G +++ LI
Sbjct: 293 GFKADIITYNTLI 305
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 35/162 (21%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D K + L+E I + + + G + + FN L+
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILI--------------- 410
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + R+++ E+ + G+ + TY ++ GFC+ G+ A +L E + R V
Sbjct: 411 -NGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRV 469
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
P +++ ++ LC G++ KAL
Sbjct: 470 R------------------PDIVSYKILLDGLCDNGELEKAL 493
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
+ FS + E + +++ G+ +YT + +++ FC+ + + A + +
Sbjct: 93 RLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKI--- 149
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
+++G+ P T+ FN ++ LC ++ +AL L+ M E G P+
Sbjct: 150 ---------------MKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLI 194
Query: 213 SHDMLIKKL 221
+ + L+ L
Sbjct: 195 TLNTLVNGL 203
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A E+ ++ ++ D+ Y I+ G C + ++A +L +GV
Sbjct: 487 GELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGV------- 539
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+L R +N +I LC + KA +L M E G P ++++LI+
Sbjct: 540 -KLDAR----------AYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIR 586
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +++ + + +++ G+ P++ TY ++ GFC GR + A LL E +ER ++ NVVT
Sbjct: 267 GRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTY 326
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G IP TIT+N++I C ++ A + +LM
Sbjct: 327 NALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMAT 386
Query: 205 HGKIPSRTSHDMLI 218
G P + LI
Sbjct: 387 KGCSPDVFTFTTLI 400
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ N+ K+G + ++ D ++ ++ T R++ A +M + G
Sbjct: 329 LINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKG 388
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
PDV+T+T ++DG+C R ++ MELL+E RG+ N VT L+
Sbjct: 389 CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAAL 448
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
Q + G P +T N ++ LC GK+ AL
Sbjct: 449 DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDAL 483
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 29/182 (15%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L++ ID+F+ + + SV DFN L+ A+V + D + +
Sbjct: 62 LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQK--------------- 106
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
++ ++ D+Y++T ++ FC + A+ + + G+ +VVT LL L + H
Sbjct: 107 -MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDH 165
Query: 173 -------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P +TF ++ LC G++ +A+ LL M E+G P + ++ +
Sbjct: 166 RVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVD 225
Query: 220 KL 221
+
Sbjct: 226 GM 227
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR A +L + + P+V TY A+++ F K G+ EA EL +E + RG+ N +T
Sbjct: 302 GRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITY 361
Query: 162 IQLLQ------RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ RL+ G P TF +I CG +I + LL M
Sbjct: 362 NSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR 421
Query: 205 HGKIPSRTSHDMLI 218
G + + +++ LI
Sbjct: 422 RGLVANTVTYNTLI 435
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M +++ + P+V T+ +++G+CK GR ++ +EL E RG+ + + I
Sbjct: 559 RLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYI 618
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P TIT N++ ++ +A+ +L
Sbjct: 619 TLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAML 672
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 82/202 (40%), Gaps = 33/202 (16%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------- 96
S L + F + K G + V F LL L + + A+ F
Sbjct: 129 CSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTL 188
Query: 97 -NHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE-RG 153
N L GRV EA +L + +GL+PD TY +DG CK+G + A+ LL + E
Sbjct: 189 MNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISH 248
Query: 154 VTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
+ NVV ++ L EM G P +T+N +I C G+ A
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
LL M E P+ +++ LI
Sbjct: 309 RLLQEMLERKISPNVVTYNALI 330
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 28/150 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++ E+L + GL + TY ++ GFC VG N A++L + I GV ++VT
Sbjct: 408 RIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCN 467
Query: 163 QLLQ----------RLEM------------------GHIPRTITFNNVIQALCGVGKIHK 194
LL LEM G P +T+N +I L GK +
Sbjct: 468 TLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLE 527
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G +P ++ +I L +Q
Sbjct: 528 AEELYEEMPHRGIVPDTITYSSMIDGLCKQ 557
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EA E+ + + G+ PD TY++++DG CK R +EA ++ + + NVV
Sbjct: 523 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVV-- 580
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN +I C G++ L L M G + + LI
Sbjct: 581 ----------------TFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLI 621
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D + K S L E +F S+ + +V FN L+
Sbjct: 542 PDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI--------------- 586
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + GRV++ E+ + G+ D Y ++ GF KVG N A+++ E I GV
Sbjct: 587 -NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 645
Query: 155 TQNVVTLIQLL 165
+ +T+ +L
Sbjct: 646 YPDTITIRNML 656
>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
Length = 864
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 34/193 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR-VEE 106
+KA +D++N +K +G L E V F N+L GR +EE
Sbjct: 377 LKAGKQDAAVDLYNEMKLNG-----------------LEENSFIVDAFINNLKRGRKMEE 419
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQ 163
A + + + GL D YT++MDGF K GR + A + + E G+ +VV LI
Sbjct: 420 AEGLCKYMMSKGLLLDRVNYTSLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLIN 479
Query: 164 LLQRL-------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L RL E+G P T+N +I A C GK+ A+ L M H +P+
Sbjct: 480 GLLRLGKYDAESVYSGIRELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPN 539
Query: 211 RTSHDMLIKKLDQ 223
+ ++L+ L +
Sbjct: 540 SITCNILVGGLSK 552
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 21/125 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ +AYE+L +K+ GL PD Y ++ G K+G EA++ E + +G+
Sbjct: 696 MSKAYEILSKMKDSGLDPDASLYNTLISGHGKIGNKKEAIKFYCEMVTKGL--------- 746
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI---KK 220
+P+T T+N +I+ VGK+ +A LL M P+ +++D+LI
Sbjct: 747 ---------VPKTSTYNVLIEDFAKVGKMDQARELLNEMQVRRVPPNSSTYDILICGWCN 797
Query: 221 LDQQP 225
L +QP
Sbjct: 798 LSKQP 802
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G++E A ++ +K + P+ T ++ G K G + A+++LNE + G+ NV
Sbjct: 519 GKLENAIKLWNEMKGHSVMPNSITCNILVGGLSKAGETERAIDVLNEMLLWGICPNVTIH 578
Query: 160 --------------TLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T++Q+ +RL MG +N++I LCG+G +A L+L M +
Sbjct: 579 RALLNACSKCERADTILQMHKRLVGMGLKANREVYNSLITVLCGLGMTKRATLVLNNMTK 638
Query: 205 HGKIPSRTSHDMLI 218
G +++ LI
Sbjct: 639 EGISADTVTYNALI 652
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA + + +DG PDV TY++I++G CK G EA LL E + GV N V
Sbjct: 172 LSEALSLYEEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALLREMDKMGVNPNHVVYAI 231
Query: 164 LLQRL 168
L+ L
Sbjct: 232 LVDSL 236
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 43 RFVDKIKASPLKERIDIF-NSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV 101
R +DK+ +P I +S+ K G+ W + ++ + +
Sbjct: 215 REMDKMGVNPNHVVYAILVDSLFKAGSAWESFIYQSQMIVCGVSFDLVVCTTLIDGLFKA 274
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+ +EA M + P+ TYTA++DG+CK+G + A LL + ++ V NVVT
Sbjct: 275 GKSDEAEAMFCTLAKLNCIPNNITYTAMIDGYCKLGDMDGAESLLRDMEKKQVVPNVVT 333
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
L+P++ TYT ++ +CK +EA+ L E I G +P +T
Sbjct: 152 LEPNLVTYTTLISAYCKQHGLSEALSLYEEMISDGF------------------LPDVVT 193
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++++I LC G + +A LL M + G P+ + +L+ L
Sbjct: 194 YSSIINGLCKRGMLTEAKALLREMDKMGVNPNHVVYAILVDSL 236
Score = 36.2 bits (82), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA +L + G+ P+ Y ++D K G + E+ ++ I GV+ ++V
Sbjct: 205 GMLTEAKALLREMDKMGVNPNHVVYAILVDSLFKAGSAWESFIYQSQMIVCGVSFDLVVC 264
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++ IP IT+ +I C +G + A LL M +
Sbjct: 265 TTLIDGLFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMIDGYCKLGDMDGAESLLRDMEK 324
Query: 205 HGKIPSRTSHDMLI 218
+P+ ++ +I
Sbjct: 325 KQVVPNVVTYSSII 338
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A++ L N+ + G PD +YT ++ G C+ R N+A ELL E +
Sbjct: 331 GRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCP------ 384
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN I LC G I +A++L+ M EHG +++ L+
Sbjct: 385 ------------PNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGF 432
Query: 222 DQQ 224
Q
Sbjct: 433 CVQ 435
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
+ PD YTYT ++ C GR +A+ LL++ + RG NVVT LL+ +
Sbjct: 138 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAM 197
Query: 169 ----EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
EM G P +T+N +I +C G++ A LL ++ +G P S+ L+K L
Sbjct: 198 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGL 257
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 20/150 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF G ++EA E++ + G P++ TY + DG K S +A+ELL+ +
Sbjct: 496 VNFFCQK---GFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVS 552
Query: 152 RGVTQNVVTLIQLL----------QRLEMGHI-------PRTITFNNVIQALCGVGKIHK 194
+GV+ +V+T ++ + ++M H+ P+ + +N ++ LC +I
Sbjct: 553 KGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDN 612
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ L M +G +P+ +++ +LI+ L ++
Sbjct: 613 AIDFLAYMVSNGCMPNESTYIILIEGLARE 642
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
E+A +L ++ G P++ TY I++G C+ GR ++A +LLN G + V+ L
Sbjct: 194 EQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTL 253
Query: 165 LQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L+ L E +P +TF+ +I+ C G + +A+ +L M EH
Sbjct: 254 LKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHEC 313
Query: 208 IPSRTSHDMLIKKLDQQ 224
+ T +++I + +Q
Sbjct: 314 ATNTTLCNIVINSICKQ 330
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A ++L + + G +PD +YT ++ G C R ++ EL E +E+ N VT
Sbjct: 226 GRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTF 285
Query: 162 ----------------IQLLQRLEMGHIPRTITFNN-VIQALCGVGKIHKALLLLFLMYE 204
IQ+LQ++ T N VI ++C G++ A L M
Sbjct: 286 DMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGS 345
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P S+ ++K L
Sbjct: 346 YGCNPDTISYTTVLKGL 362
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A ++ ++ G V TY A+++GFC G + A+EL + T TL
Sbjct: 401 GLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTL 460
Query: 162 IQLL---QRL--------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ L +RL EM H P +TFN ++ C G + +A+ L+ M EHG
Sbjct: 461 LTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGC 520
Query: 208 IPSRTSHDMLIKKLDQ 223
P+ +++ L + +
Sbjct: 521 TPNLITYNTLFDGITK 536
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 94/205 (45%), Gaps = 33/205 (16%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-----------HLMV 101
+++ I + +++ G V +N L+ + D+A++ F + L+
Sbjct: 403 IEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLT 462
Query: 102 G-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
G R++ A E++ + + P+V T+ +++ FC+ G +EA+EL+ + +E G T
Sbjct: 463 GLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTP 522
Query: 157 NVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
N++T ++LL L G P ITF+++I L ++ +A+ +
Sbjct: 523 NLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMF 582
Query: 200 FLMYEHGKIPSRTSHDMLIKKLDQQ 224
L + G P ++ ++ L ++
Sbjct: 583 HLAQDIGMRPKALVYNKILLGLCKR 607
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 14/124 (11%)
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-RLEM 170
++ DG PDVY T ++ C+ GR+++A +L A G +V L+
Sbjct: 64 LSASRDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRY 123
Query: 171 GHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
GH+ P T+ +I+ LC G++ AL LL M G P+ ++ +L
Sbjct: 124 GHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVL 183
Query: 218 IKKL 221
++ +
Sbjct: 184 LEAM 187
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 44/245 (17%)
Query: 21 SRSPSAAESLDL--KENPRSLQAQRF-----VDKI-KASPLKERIDIFNSIKKDGTNWSV 72
+S + A +LDL K RS++A +D + K L + + +FN ++ G V
Sbjct: 220 CKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADV 279
Query: 73 SDFNDLLMALVMLNEQDTAVKF---------------FSNHLMV----GRVEEAYEMLMN 113
++ ++ L D K FS + V G++ EA E+
Sbjct: 280 VAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNE 339
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QR 167
+ G+ PD TY++++DGFCK R EA ++L+ + +G N+VT L+ +R
Sbjct: 340 MVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKR 399
Query: 168 LEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
++ G + T+T+N ++Q C GK++ A L M G PS ++ +
Sbjct: 400 VDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGI 459
Query: 217 LIKKL 221
L+ L
Sbjct: 460 LLDGL 464
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 52/169 (30%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
RV+ + + + GL D TY ++ GFC+ G+ N A EL E + RGV +VVT
Sbjct: 399 RVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYG 458
Query: 161 -----------------LIQLLQRLEM--------------------------------- 170
+ + +Q+ M
Sbjct: 459 ILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVK 518
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G P +T+N +I LC G + +A +L M E G PS ++++LI+
Sbjct: 519 GVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIR 567
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 37/184 (20%)
Query: 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF------- 94
+R + I + E ID+F S+ + S+ DF+ L A+ E D + F
Sbjct: 39 ERLRNGIVDIKVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLN 98
Query: 95 ------FSNHLMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
++ ++M+ ++ A+ ++ G +P+ T++ +++GFC GR +EA
Sbjct: 99 GIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEA 158
Query: 143 MELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ L++ + EM + P +T N +I LC G++ +AL+L+ M
Sbjct: 159 VALVDRMV------------------EMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRM 200
Query: 203 YEHG 206
++G
Sbjct: 201 VKYG 204
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA ++ + +P+V T +++G C GR EA+ L++ ++ G N +T
Sbjct: 153 GRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITY 212
Query: 162 ----------------IQLLQRLEMGHIPRTIT-FNNVIQALCGVGKIHKALLLL 199
+ L +++E I ++ ++ VI +LC G + AL L
Sbjct: 213 GPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLF 267
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A+ + ++ G+KPDV TY ++ G CK G +EA L + E G + T
Sbjct: 504 KVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTY- 562
Query: 163 QLLQRLEMG 171
+L R +G
Sbjct: 563 NILIRAHLG 571
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +++ + + +++ G+ P++ TY ++ GFC GR + A LL E +ER ++ NVVT
Sbjct: 267 GRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTY 326
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G IP TIT+N++I C ++ A + +LM
Sbjct: 327 NALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMAT 386
Query: 205 HGKIPSRTSHDMLI 218
G P + LI
Sbjct: 387 KGCSPDVFTFTTLI 400
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ N+ K+G + ++ D ++ ++ T R++ A +M + G
Sbjct: 329 LINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKG 388
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
PDV+T+T ++DG+C R ++ MELL+E RG+ N VT L+
Sbjct: 389 CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAAL 448
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
Q + G P +T N ++ LC GK+ AL
Sbjct: 449 DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDAL 483
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 29/182 (15%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L++ ID+F+ + + SV DFN L+ A+V + D + +
Sbjct: 62 LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQK--------------- 106
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
++ ++ D+Y++T ++ FC + A+ + + G+ +VVT LL L + H
Sbjct: 107 -MERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDH 165
Query: 173 -------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P +TF ++ LC G++ +A+ LL M E+G P + ++ +
Sbjct: 166 RVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVD 225
Query: 220 KL 221
+
Sbjct: 226 GM 227
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR A +L + + P+V TY A+++ F K G+ EA EL +E + RG+ N +T
Sbjct: 302 GRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITY 361
Query: 162 IQLLQ------RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ RL+ G P TF +I CG +I + LL M
Sbjct: 362 NSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPR 421
Query: 205 HGKIPSRTSHDMLI 218
G + + +++ LI
Sbjct: 422 RGLVANTVTYNTLI 435
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M +++ + P+V T+ +++G+CK GR ++ +EL E RG+ + + I
Sbjct: 559 RLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYI 618
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P TIT N++ ++ +A+ +L
Sbjct: 619 TLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAML 672
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 81/202 (40%), Gaps = 33/202 (16%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------- 96
S L + F + K G + V F LL L + + A+ F
Sbjct: 129 CSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTL 188
Query: 97 -NHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE-RG 153
N L GRV EA +L + +GL+PD TY +DG CK+G + A+ LL + E
Sbjct: 189 MNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISH 248
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ NVV ++ L + G P +T+N +I C G+ A
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQ 308
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
LL M E P+ +++ LI
Sbjct: 309 RLLQEMLERKISPNVVTYNALI 330
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 28/150 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++ E+L + GL + TY ++ GFC VG N A++L + I GV ++VT
Sbjct: 408 RIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCN 467
Query: 163 QLLQ----------RLEM------------------GHIPRTITFNNVIQALCGVGKIHK 194
LL LEM G P +T+N +I L GK +
Sbjct: 468 TLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLE 527
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G +P ++ +I L +Q
Sbjct: 528 AEELYEEMPHRGIVPDTITYSSMIDGLCKQ 557
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EA E+ + + G+ PD TY++++DG CK R +EA ++ + + NVV
Sbjct: 523 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVV-- 580
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN +I C G++ L L M G + + LI
Sbjct: 581 ----------------TFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLI 621
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D + K S L E +F S+ + +V FN L+
Sbjct: 542 PDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI--------------- 586
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + GRV++ E+ + G+ D Y ++ GF KVG N A+++ E I GV
Sbjct: 587 -NGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 645
Query: 155 TQNVVTLIQLL 165
+ +T+ +L
Sbjct: 646 YPDTITIRNML 656
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++EA +L +++ GL D TYT ++DG+CKVG+ EA + N+ +++ VT NVVT
Sbjct: 403 AGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT 462
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L L EM G T+N++I LC G + +A+ + M
Sbjct: 463 YTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMD 522
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
E G P ++ +I L Q
Sbjct: 523 EAGLKPDVYTYTTIIGALCQ 542
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +E+A ++++ GLKPDVYTYT I+ C+ + A LL E +++G+
Sbjct: 508 AGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIK----- 562
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +T+N ++ C G++ LL M E P+ T+++ L+K+
Sbjct: 563 -------------PTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + VG++ EA+ + + + P+V TYTA+ DG CK G A ELL+E
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM 486
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+G+ N+ T L+ L E G P T+ +I ALC ++
Sbjct: 487 CSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKEL 546
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+A LL M + G P+ ++++L+
Sbjct: 547 DRAHSLLQEMLDKGIKPTIVTYNVLM 572
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 41/157 (26%)
Query: 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111
PL E + +F + + T +N LL AL GR+++A+++
Sbjct: 237 PLDEAVQLFQELPEKNT----CSYNILLKALCT----------------AGRIKDAHQLF 276
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171
+ + PDV TY ++ G+C + A++LL+E RG+ N V
Sbjct: 277 DEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPV------------ 321
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ +VI LC G++ A+ ++ M HG +
Sbjct: 322 ------AYTSVIALLCDEGQVSDAVRVVEDMVMHGVV 352
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 23/156 (14%)
Query: 71 SVSDFNDLLMALVMLNEQDTAV--KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128
+V D++M V+L D AV S G + A ++ GL D TYTA
Sbjct: 339 AVRVVEDMVMHGVVL---DAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTA 395
Query: 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188
+++G C+ G EA +L E ++G+ + V T+ +I C
Sbjct: 396 LINGLCRAGELKEAERVLQEMEDKGLDVDAV------------------TYTVLIDGYCK 437
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
VGK+ +A L+ M + P+ ++ L L +Q
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQ 473
>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
herrerae]
Length = 395
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV FN L+ + ++ +G ++E + + + G
Sbjct: 145 VFDAITKWGLRPSVVSFNTLM----------------NGYIRLGDLDEGFRLKNAMHASG 188
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E +++G+ N VT L+
Sbjct: 189 VQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAM 248
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N + LC G + +A L+ M G P + ++ LI
Sbjct: 249 EIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 305
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD TYT ++DG CK G ME E +R + +N+
Sbjct: 277 GDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGD----METAFEHQKRMIQENI--- 329
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
RL+ + + +I LC G+ A +L M G P+ ++ M+I +
Sbjct: 330 -----RLD------DVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEF 378
Query: 222 DQQ 224
++
Sbjct: 379 CKK 381
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 22/125 (17%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V ++ +M+G+ ++G +E L N
Sbjct: 124 YFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNA 183
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
GV +V T L+ + L+ G +P +TF +I C G+
Sbjct: 184 MHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGR 243
Query: 192 IHKAL 196
+ A+
Sbjct: 244 VDLAM 248
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GR +A +ML + + GLKP+ TYT I++ FCK G +LL E
Sbjct: 347 GRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKKGDVWTGSKLLKE 393
>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Glycine max]
Length = 583
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 91/200 (45%), Gaps = 34/200 (17%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D KA ++E + NS+ +G +VS +N L+ L N+ A K
Sbjct: 376 PNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCR-NQNVRAAKK 434
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
N + E YE LK DV TY ++ G+CK G ++A +LL E + GV
Sbjct: 435 LLNEM------ENYE---------LKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGV 479
Query: 155 TQNVVTLIQLLQ--------------RLEM---GHIPRTITFNNVIQALCGVGKIHKALL 197
N VT L+ R +M G +T+N +I+ C GK+ A
Sbjct: 480 KPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANR 539
Query: 198 LLFLMYEHGKIPSRTSHDML 217
LL M E G P+RT++D++
Sbjct: 540 LLNEMLEKGLNPNRTTYDVV 559
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA + + GLKP++ T+ A+++GFCK EA +L ++ E+ +
Sbjct: 322 GKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDL------- 374
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P ITFN +I A C G + + L M + G P+ ++++ LI L
Sbjct: 375 -----------VPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGL 423
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ M G ++ A ++ ++ +G + +V TY ++ GFCK G+ +A LLNE +E+G+ N
Sbjct: 493 YCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPN 552
Query: 158 VVTL-IQLLQRLEMGHIP 174
T + L+ LE G IP
Sbjct: 553 RTTYDVVRLEMLEKGFIP 570
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 39/200 (19%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD------------------TAVKFFSNHL 99
++F ++ G S++ N LL ALV NE T F N L
Sbjct: 151 EVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGL 210
Query: 100 M-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE---AMELLNEAIERGVT 155
G++ +A +++ ++K G P++ TY ++DG CK G + + A +L E + +
Sbjct: 211 CKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKIC 270
Query: 156 QNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLL 198
N +T L+ EM G P +T+N++I L GK+ +A+ L
Sbjct: 271 PNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIAL 330
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
M G P+ + + LI
Sbjct: 331 WDKMVGLGLKPNIVTFNALI 350
>gi|297825903|ref|XP_002880834.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326673|gb|EFH57093.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 797
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 23/178 (12%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
+A F+DK+ LK I +SI K D ++ F + + L+ V F
Sbjct: 335 EALGFLDKMLGKGLKINCVIVSSILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYNVAF 394
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ +GRVEEA E+L +K+ G+ PDV YT ++DG+C G+ +A++L++E I G
Sbjct: 395 DALS-KLGRVEEAIELLQEMKDKGIVPDVINYTTLIDGYCLKGKVVDALDLIDEMIGNGT 453
Query: 155 TQNVVT----------------LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKA 195
+ +++T ++++ +R++ G P +T N +I+ LC K+ +A
Sbjct: 454 SPDLITYNVLVSGLARNGHEEAVLEIYERMKAEGLKPNAVTDNVIIEGLCFARKVKEA 511
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 29/204 (14%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA 91
L E+P + F+D + + E+ + D TN V D DL M+
Sbjct: 238 LLESPSVFSYKTFIDGLCVNGETEKAVVLIEEMID-TNVLVGD--DLRTVFCMV------ 288
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V+ F N + ++E A +++ ++ G PDV +AI+D +CK EA+ L++ +
Sbjct: 289 VRGFCNEM---KMEAAESVILEMEKIGFGPDVSACSAIIDRYCKNMNLPEALGFLDKMLG 345
Query: 152 RGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHK 194
+G+ N V + +LQ +M + +N AL +G++ +
Sbjct: 346 KGLKINCVIVSSILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEE 405
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A+ LL M + G +P ++ LI
Sbjct: 406 AIELLQEMKDKGIVPDVINYTTLI 429
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
GL PD++TYT ++ +C++ +A L + +RG+ +VVT LL R
Sbjct: 620 GLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDR 669
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
E+L G+ DV +YT ++D CK+ + +A EL + I+ G+ ++V L+
Sbjct: 693 ELLREFSASGIGLDVVSYTVLIDRQCKMDKLEQAAELFDRMIDSGLEPDIVAYTALISSY 752
Query: 168 LEMGHIPRTITF 179
G+I + +T
Sbjct: 753 FRKGYIDKAVTL 764
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++EA +L +++ GL D TYT ++DG+CKVG+ EA + N+ +++ VT NVVT
Sbjct: 403 AGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVT 462
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L L EM G T+N++I LC G + +A+ + M
Sbjct: 463 YTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMD 522
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
E G P ++ +I L Q
Sbjct: 523 EAGLKPDVYTYTTIIGALCQ 542
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +E+A ++++ GLKPDVYTYT I+ C+ + A LL E +++G+
Sbjct: 508 AGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIK----- 562
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +T+N ++ C G++ LL M E P+ T+++ L+K+
Sbjct: 563 -------------PTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQ 609
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + VG++ EA+ + + + P+V TYTA+ DG CK G A ELL+E
Sbjct: 427 TYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEM 486
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+G+ N+ T L+ L E G P T+ +I ALC ++
Sbjct: 487 CSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKEL 546
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+A LL M + G P+ ++++L+
Sbjct: 547 DRAHSLLQEMLDKGIKPTIVTYNVLM 572
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 41/157 (26%)
Query: 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111
PL E + +F + + T +N LL AL GR+++A+++
Sbjct: 237 PLDEAVQLFQELPEKNT----CSYNILLKALCT----------------AGRIKDAHQLF 276
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171
+ + PDV TY ++ G+C + A++LL+E RG+ N V
Sbjct: 277 DEMAS---PPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPV------------ 321
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ +VI LC G++ A+ ++ M HG +
Sbjct: 322 ------AYTSVIALLCDEGQVSDAVRVVEDMVMHGVV 352
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 23/156 (14%)
Query: 71 SVSDFNDLLMALVMLNEQDTAV--KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128
+V D++M V+L D AV S G + A ++ GL D TYTA
Sbjct: 339 AVRVVEDMVMHGVVL---DAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTA 395
Query: 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188
+++G C+ G EA +L E ++G+ + V T+ +I C
Sbjct: 396 LINGLCRAGELKEAERVLQEMEDKGLDVDAV------------------TYTVLIDGYCK 437
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
VGK+ +A L+ M + P+ ++ L L +Q
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQ 473
>gi|224137884|ref|XP_002326464.1| predicted protein [Populus trichocarpa]
gi|222833786|gb|EEE72263.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T V VGR+EEA+ + + G P+V Y+A++DG C+ G A ELL E
Sbjct: 202 TYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSALLDGICRFGIVERAFELLAEM 261
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
++G G P IT+ +VIQ+ C G+ AL +L LM G P
Sbjct: 262 EKQG----------------EGCCPNVITYTSVIQSFCEQGRTKDALSVLELMEVRGCAP 305
Query: 210 SRTSHDMLI 218
+R + I
Sbjct: 306 NRVTASAWI 314
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EA +L + ++PD Y ++ C+ G + A +L+ E + L
Sbjct: 144 GLADEALMVLKKMPEFNIRPDTTAYNVVIRSLCEKGDVDMAKKLMGE----------MGL 193
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
I L P IT+ ++I+ C VG++ +A L +M HG P+ ++ L+
Sbjct: 194 IDLY--------PDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSALL 242
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 23/143 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A ++L ++N G KPDV TY +++G CK GR +EA++ LN G NV+T
Sbjct: 210 VGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNI 269
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L+ L G P +TFN +I LC G + +A+ +L M HG
Sbjct: 270 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 329
Query: 207 KIPSRTSHDMLI------KKLDQ 223
P+ S++ L+ KK+D+
Sbjct: 330 CTPNSLSYNPLLHGFCKEKKMDR 352
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L IDI + G + +N LL + D A+++ N
Sbjct: 315 LGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT 374
Query: 99 LMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L+ G+V+ A E+L + + G P + TY ++DG KVG++ A++LL+E +G
Sbjct: 375 LLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKG 434
Query: 154 VTQNVVTLIQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKAL 196
+ +++T L+ L +G P IT+N+++ LC + +A+
Sbjct: 435 LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAI 494
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M P+ ++ +LI+ +
Sbjct: 495 DFLAYMISKRCKPTEATYTILIEGI 519
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA + L N+ + G +P+V T+ I+ C GR +A +LL++ + +G + +VVT
Sbjct: 243 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 302
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I +L+++ M G P ++++N ++ C K+ +A+ L +M
Sbjct: 303 NILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVS 362
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 363 RGCYPDIVTYNTLLTAL 379
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A E+L PDV TYT +++ CK +AM+LL+E +G +VVT
Sbjct: 173 GKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTY 232
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+ L + G P IT N +++++C G+ A LL M
Sbjct: 233 NVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLR 292
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G PS + ++LI L +Q
Sbjct: 293 KGCSPSVVTFNILINFLCRQ 312
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 72/134 (53%), Gaps = 18/134 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA---MELLNE--AIERGVTQ 156
G +E+ ++ L ++ G PD+ T+++ GFC++G++ +A ME+L + A+ +T
Sbjct: 71 GELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITY 130
Query: 157 NVV-----------TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
NV+ +Q+L R+ + P +T+N +++ LC GK+ +A+ +L +
Sbjct: 131 NVLISGYCKSGEIDNALQVLDRMNVA--PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQK 188
Query: 206 GKIPSRTSHDMLIK 219
P ++ +LI+
Sbjct: 189 ECYPDVITYTILIE 202
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 20/141 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G+ ++A ++ ++ G PDV TY ++ G+CK G + A+++L+ V +VVT
Sbjct: 105 IGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVT 161
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+L ++L+ P IT+ +I+A C + +A+ LL M
Sbjct: 162 YNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 221
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G P ++++LI + ++
Sbjct: 222 NKGSKPDVVTYNVLINGICKE 242
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K + I + + +++ G + ++ L+ L + D A+KFF
Sbjct: 416 KVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAI 475
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N +M+G + + A + L + + KP TYT +++G G + EA++LLNE
Sbjct: 476 TYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 535
Query: 150 IERGVTQ 156
RG+ +
Sbjct: 536 CSRGLVK 542
>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Vitis vinifera]
Length = 709
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 33/209 (15%)
Query: 12 FSVLLVDSPSRSPSAAESL-DLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTN 69
F V +PSR E + ++ P S +D KA + E ++F ++ G+
Sbjct: 417 FGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGST 476
Query: 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAI 129
S + ++ L + D R EE ++++ ++ N G+ PDV TY +
Sbjct: 477 MSSPTAKTYAIMILALVQSD-------------RTEECFKLIKDMINSGVLPDVSTYKQV 523
Query: 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189
++G C G+ EA + L E +G + P +T+N + LC
Sbjct: 524 IEGMCLAGKVEEAYKFLEEMGNKG------------------YRPDIVTYNCFLDVLCEN 565
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
K +AL L M E G +PS + +MLI
Sbjct: 566 KKSEEALGLYGRMIEAGCVPSVHTFNMLI 594
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 22/123 (17%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
VE+A M VKN +KPD TY + G+C+V + M +L E I
Sbjct: 391 VEDAQAMFRRVKNK-VKPDANTYNILFFGWCRVRNPSRGMRVLEEMI------------- 436
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI---PSRTSHDMLIKK 220
EMGH P + T+N I + C G + +A L M G P+ ++ ++I
Sbjct: 437 -----EMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILA 491
Query: 221 LDQ 223
L Q
Sbjct: 492 LVQ 494
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 20/124 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN-------VVTLIQLLQR--- 167
G PD +TY +D FCK G EA EL +G T + + ++ L+Q
Sbjct: 439 GHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRT 498
Query: 168 ----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+ G +P T+ VI+ +C GK+ +A L M G P +++
Sbjct: 499 EECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCF 558
Query: 218 IKKL 221
+ L
Sbjct: 559 LDVL 562
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + AY++L +K +GL PD +TY+ +D CK R EA +L N E+G+ N V
Sbjct: 473 GHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMY 532
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I LL+R+ +P + T+N++I +C GK+ + L ++ M +
Sbjct: 533 TALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSK 592
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ ++ +LI+++
Sbjct: 593 MGVKPTVATYTILIEEM 609
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 39/190 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A + E I +F +++D +V + ++ AL F N R E
Sbjct: 296 EAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL------------FGN----DRNLEGM 339
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-R 167
++ ++ +P+V+TYT ++D CK + +E+ +LNE +E+G+ +VVT L++
Sbjct: 340 DLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGY 399
Query: 168 LEMGHI----------------PRTITFNNVIQALCGVGK---IHKALLLLFLMYEHGKI 208
E G I P T+N +I CG K +HKA+ LL M E
Sbjct: 400 CEEGRIEAALEILGLMESNNCRPNERTYNELI---CGFSKRKHVHKAMTLLSKMLESKLT 456
Query: 209 PSRTSHDMLI 218
PS +++ LI
Sbjct: 457 PSLVTYNSLI 466
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 37/170 (21%)
Query: 71 SVSDFNDLLMAL---VMLNEQDTAVKFFSNHLMV----------------GRVEEAYEML 111
SV +N+LLM L +M++E N ++V G + EA +
Sbjct: 178 SVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYV 237
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171
+ GL PD +TYT+++ G+C+ N A ++ N +G +N
Sbjct: 238 SKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRN-------------- 283
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+++ +I LC G+I + + L M E P+ ++ ++I L
Sbjct: 284 ----EVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL 329
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++E + ++ D P V TYT I+ R+ E M+L NE ER NV T
Sbjct: 298 GRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHT- 356
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ ++ A+C K+ ++ +L M E G +PS +++ LI+
Sbjct: 357 -----------------YTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIR 397
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 81/210 (38%), Gaps = 62/210 (29%)
Query: 25 SAAESLDL-KEN---PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLL 79
SA + LDL KEN P F+D + K+ ++E D+FNS+K+ G + + L+
Sbjct: 477 SAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALI 536
Query: 80 MALVMLNEQDTAVKFFS--------------NHLMVG-----RVEEAYEMLMNVKNDGLK 120
+ D A+ N L+ G +V+E M+ N+ G+K
Sbjct: 537 DGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVK 596
Query: 121 P-----------------------------------DVYTYTAIMDGFCKVGRSNEAMEL 145
P DVYTYTA + +C G EA +
Sbjct: 597 PTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGM 656
Query: 146 LNEAIERGVTQNVVT---LIQLLQRLEMGH 172
+ IE GV + +T LI +RL + +
Sbjct: 657 MARMIEAGVMPDSLTYTLLISAYERLGLAY 686
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 78/206 (37%), Gaps = 36/206 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K L E I N + + G SV +N L+ + A++
Sbjct: 366 KERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNER 425
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ G V +A +L + L P + TY +++ CK G + A +LL+
Sbjct: 426 TYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLL 485
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
E G+ + T + L E G + + +I C GKI
Sbjct: 486 KENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKI 545
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+A+ LL M+ +P+ ++++ LI
Sbjct: 546 DEAISLLERMHSEDCLPNSSTYNSLI 571
>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
Length = 708
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 33/209 (15%)
Query: 12 FSVLLVDSPSRSPSAAESL-DLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTN 69
F V +PSR E + ++ P S +D KA + E ++F ++ G+
Sbjct: 390 FGWCRVRNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGST 449
Query: 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAI 129
S + ++ L + D R EE ++++ ++ N G+ PDV TY +
Sbjct: 450 MSSPTAKTYAIMILALVQSD-------------RTEECFKLIKDMINSGVLPDVSTYKQV 496
Query: 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189
++G C G+ EA + L E +G + P +T+N + LC
Sbjct: 497 IEGMCLAGKVEEAYKFLEEMGNKG------------------YRPDIVTYNCFLDVLCEN 538
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
K +AL L M E G +PS + +MLI
Sbjct: 539 KKSEEALGLYGRMIEAGCVPSVHTFNMLI 567
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 22/123 (17%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
VE+A M VKN +KPD TY + G+C+V + M +L E I
Sbjct: 364 VEDAQAMFRRVKNK-VKPDANTYNILFFGWCRVRNPSRGMRVLEEMI------------- 409
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI---PSRTSHDMLIKK 220
EMGH P + T+N I + C G + +A L M G P+ ++ ++I
Sbjct: 410 -----EMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILA 464
Query: 221 LDQ 223
L Q
Sbjct: 465 LVQ 467
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 20/124 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN-------VVTLIQLLQR--- 167
G PD +TY +D FCK G EA EL +G T + + ++ L+Q
Sbjct: 412 GHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRT 471
Query: 168 ----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+ G +P T+ VI+ +C GK+ +A L M G P +++
Sbjct: 472 EECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCF 531
Query: 218 IKKL 221
+ L
Sbjct: 532 LDVL 535
>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
Length = 448
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 34/165 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+AS ++E +++ + G ++ +N L+M NE D A++ F
Sbjct: 301 CRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRA---------- 350
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++ G P+ Y+ +DG CKVG+ NEA E +++ERG
Sbjct: 351 ------MEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGC------------- 391
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
+P +T+N +I+ L G ++ +A L M E G I R+
Sbjct: 392 -----VPDNVTYNALIRGLFGANRMDEAHRLYREMGERGYIADRS 431
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV-KNDGLKPDVYT 125
G ++ D + + + + +++T M GR+ EA + V + + + D
Sbjct: 233 GRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLDAGI 292
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQNVVTL-----------IQLLQRLE 169
Y +++G C+ + EA+E+ +++G T N + + +QL + +E
Sbjct: 293 YNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRAME 352
Query: 170 -MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G P T+ ++ I LC VGKI++A E G +P +++ LI+ L
Sbjct: 353 EKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGL 405
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 38/221 (17%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
+P + VDK + + E ++F ++ +G + +N +L AL+ + D K
Sbjct: 42 DPDVVTCGLLVDKFCEMKRVGEVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFK 101
Query: 94 F-------------------FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F + G+ EA E++ + + PD TYTA++ C
Sbjct: 102 FSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSV-PDGMTYTALISVLC 160
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTI 177
K R+++AM++ + +E+ + NV LL + ++ G+ P
Sbjct: 161 KHNRADDAMKVFDIMVEKEIVPNVDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSAS 220
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ +++ LC G+ + A + M G +P ++ LI
Sbjct: 221 TYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLI 261
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A ML + +G PDV T ++D FC++ R E EL E GV ++
Sbjct: 26 VDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQELESNGVAVGMLAYNA 85
Query: 164 LLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKA 195
+L+ L G +P + + ++ L GK +A
Sbjct: 86 ILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTREA 134
>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 924
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 36/206 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
+A +K +D+F+ +++ G +V FN L++ LV + + A++
Sbjct: 598 RAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEH 657
Query: 97 -------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ +G +A+E ++++GL+ DVYTY A++ CK GR A+ + E
Sbjct: 658 TYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEM 717
Query: 150 IERGVTQN----------------VVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKI 192
+ + +N V L+Q+++ G + P T+ + I A C G +
Sbjct: 718 SAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDM 777
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+A ++ M G P+ ++ LI
Sbjct: 778 LRASKMMEEMETSGVKPNVKTYTTLI 803
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ MVG E+ + +K G P V +Y +++ + KVG+ ++A+E+ G+
Sbjct: 455 GYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKH 514
Query: 157 NVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
N+ T L+ ++ G P + +NN+I+A CG+G + +A+ ++
Sbjct: 515 NMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMV 574
Query: 200 FLMYEHGKIP-SRT 212
M + P SRT
Sbjct: 575 KEMQKERHRPTSRT 588
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA +++ +K G+KPD++TYT+ ++ CK G A +++ E GV NV T
Sbjct: 740 GDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTY 799
Query: 162 IQLLQRLEMGHIP 174
L+ +P
Sbjct: 800 TTLIHGWARASLP 812
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 18/112 (16%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A+ + +V DGLKPDV Y I+ FC +G + A + +++ +Q
Sbjct: 535 AFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRA----------------ICMVKEMQ 578
Query: 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ H P + TF +I G++ +AL + +M G IP+ + + LI
Sbjct: 579 KER--HRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALI 628
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 37/185 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------NHLMVGR 103
++E + +K++G S+ ++ ++ + D A ++F N ++ G
Sbjct: 357 MEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGN 416
Query: 104 VEEAYEMLMNV----------KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ AY N+ + +G+ + Y +MDG+ VG NE
Sbjct: 417 MIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVG---------NE----- 462
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ +T+ + L+ E G P +++ +I VGKI KAL + +M G + +
Sbjct: 463 --EKCLTVFERLK--ECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKT 518
Query: 214 HDMLI 218
+ MLI
Sbjct: 519 YSMLI 523
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 101 VGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
VGR +EEA +K +G++ + TY+ I+ GF K+G ++ A EA +R N +
Sbjct: 353 VGRDMEEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAI 412
Query: 160 TLIQ----------------LLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLM 202
L++ +E I I ++ ++ VG K L + +
Sbjct: 413 IYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERL 472
Query: 203 YEHGKIPSRTSHDMLI 218
E G PS S+ LI
Sbjct: 473 KECGFAPSVVSYGCLI 488
>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 17/162 (10%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F D + + ++ Q T + G ++ +++ +K +GL P++YTY +M+ +C
Sbjct: 219 FFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYC 278
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTI 177
G+ A +L +E ERGV NVVT L+ Q + P I
Sbjct: 279 GEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLI 338
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T+N +I C VG + KA LL + +G PS ++++LI+
Sbjct: 339 TYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIE 380
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 100/234 (42%), Gaps = 39/234 (16%)
Query: 24 PSAAESLDLKENPRSLQAQRFVDKIKASPLKERID----IFNSIKKDGTNWSVSDFNDLL 79
PS L +NP A + I A + +D FN + G + + FN LL
Sbjct: 76 PSLLHHLTQNQNPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLL 135
Query: 80 MALV----------MLNEQDTAVKF--FSNHLMV------GRVEEAYEMLMNVKNDGLKP 121
+LV NE VKF +S +M+ G +++++++L +++ GL P
Sbjct: 136 GSLVRSNCFEKAWLFFNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSP 195
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLL 165
+V YT ++DG CK G A ++ E G+ N T L
Sbjct: 196 NVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLF 255
Query: 166 QRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+++++ G P T+N ++ CG GKI +A L M E G + +++ LI
Sbjct: 256 EKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLI 309
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 21/201 (10%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI---KKDGTNW-SVSDFNDLLMALVMLNEQDTAVKFF 95
+A +D++K++ L + +N + NW V+D + + + T
Sbjct: 355 KASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLI 414
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV- 154
++ + +E+A+++ +++ GL PDVY Y ++ G C G E+ +L E V
Sbjct: 415 DAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVE 474
Query: 155 ---------------TQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLL 198
N ++LL+ +E G +P +++++I LC GK +A +L
Sbjct: 475 PSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVL 534
Query: 199 LFLMYEHGKIPSRTSHDMLIK 219
L M E PS + +M+ K
Sbjct: 535 LDKMIELQLKPSASILNMISK 555
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG +++A +L +K++GL P + TY +++G+ K G +L E RG++ + VT
Sbjct: 350 VGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVT 409
Query: 161 LIQL------LQRLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L LQ +E G +P + +I LC G + ++ L M
Sbjct: 410 CTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMG 469
Query: 204 EHGKIPSRTSHDMLI 218
E PS ++ +I
Sbjct: 470 EMHVEPSDVIYNTMI 484
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------------- 96
L+E + + ++ G + +N L+ A E D A + S
Sbjct: 168 LEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFN 227
Query: 97 ---NHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
N L GR+E A ++ + +GL PDV +Y ++ G+CKVG +E++ + +E +R
Sbjct: 228 SMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQR 287
Query: 153 GVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
G+ +VVT L+ Q E G +TF +I C G + A
Sbjct: 288 GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 347
Query: 196 LLLLFLMYEHGKIPSRTSHDMLI 218
LL + M + G PS ++ LI
Sbjct: 348 LLAVEEMRKCGIQPSVVCYNALI 370
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 17/148 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + +GR++ A E++ ++ +KPDV TY+ I+ G+CKVG + A +L + +++G
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428
Query: 154 VTQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKAL 196
V + +T L++ L++G P T+ +I C G + KAL
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 488
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L M G +P ++ +LI L +
Sbjct: 489 SLHDEMIRKGVLPDVVTYSVLINGLSKS 516
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 33/194 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K L E + +F+ + + G V F L+ A G +E+A
Sbjct: 269 CKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCK----------------AGNLEQA 312
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LI-- 162
++ ++ GL+ + T+TA++DGFCK G ++A+ + E + G+ +VV LI
Sbjct: 313 VALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALING 372
Query: 163 -----------QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+L++ +E + P +T++ +I C VG + A L M + G +P
Sbjct: 373 YCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPD 432
Query: 211 RTSHDMLIKKLDQQ 224
++ LI+ L ++
Sbjct: 433 AITYSSLIRGLCEE 446
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ +A E+ N+ G++PD +TYT ++DG CK G +A+ L +E I +GV
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV-------- 499
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P +T++ +I L + +A LLF +Y +P +D L+
Sbjct: 500 ----------LPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NVVT 160
GR+EEA ++ +++ G P+ TY ++ FC+ G + A +++ E G + N+VT
Sbjct: 166 GRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT 225
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L EM G P +++N ++ C VG +H++L + M
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 285
Query: 204 EHGKIPSRTSHDMLI 218
+ G +P + LI
Sbjct: 286 QRGLVPDVVTFTSLI 300
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL-- 164
A L ++ G+ P+VYTY ++ C GR EA+ ++ + G N VT L
Sbjct: 136 ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVA 195
Query: 165 ----------------LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
L R E P +TFN+++ LC G++ A + M G
Sbjct: 196 AFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLA 255
Query: 209 PSRTSHDMLI 218
P S++ L+
Sbjct: 256 PDVVSYNTLL 265
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
T H G VE+A + + G+ PDV TY+ +++G K R+ EA LL
Sbjct: 470 TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLL 526
>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 418
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A L +E +++G+ N VT L+
Sbjct: 191 FRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + N GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 18/109 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A+E + + ++ D YTA++ G C+ GRS +A ++L E + G+
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLK------ 378
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
P T+ +I C G + LL M G +PS
Sbjct: 379 ------------PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPS 415
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 17/115 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ A ++L + D P+V TYTA++DG C++G S +A++LL+ E+G + NVVT
Sbjct: 528 GRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTY 587
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ L G P +T+ +I LC G + KA LLL
Sbjct: 588 TALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLL 642
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+ A+E+L + + G +P+ Y A++DGFCK G+ + A E+ + + G +V T
Sbjct: 459 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYT 518
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R L+ P +T+ +I LC +G+ KAL LL LM E
Sbjct: 519 SLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEK 578
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P+ ++ LI L +
Sbjct: 579 GCSPNVVTYTALIDGLGK 596
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE+A+ + +K G+ PDVYTYT ++D FCK G +A L E G + VVT
Sbjct: 303 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 362
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
L+ + ++ G P +T+ ++ LC G I KA
Sbjct: 363 ALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 413
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+L +V +A ++ + + G +P+ TY A++DG CK G ++A E+ + I + +
Sbjct: 368 YLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSAD 427
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
R + P +T+ ++ LC K+ A LL M G P+ +D L
Sbjct: 428 SDFYFPCEDRHTLA--PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDAL 485
Query: 218 I 218
I
Sbjct: 486 I 486
>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 418
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 158 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 318
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ ++ + GLKPD TYT ++DG CK G + A E I+ + + V
Sbjct: 290 GDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L + L +G P T+ +I C G + K LL M
Sbjct: 350 TALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGHVPS 415
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 137 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 196
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 197 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 256
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKPD TYT I++ FCK G + +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 418
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 41/223 (18%)
Query: 21 SRSPSAAES-------LDLKENPRSLQAQRFV-DKIKASPLKERIDIFNSIKKDGTNWSV 72
+R PS E+ LD P + Q + D I++ L ++F+ + + G +V
Sbjct: 218 NRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTV 277
Query: 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132
FN L+ + ++ + A + + G + +A G+ PDVYTY A + G
Sbjct: 278 VTFNTLMSGMCKASDLNNA------NALRGLMAKA----------GIAPDVYTYGAFIQG 321
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ--------------RLEM---GHIPR 175
CK GR +AME+ E ERG+ N V L L+ R EM G
Sbjct: 322 LCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKAD 381
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +N ++ C V + A ++ M + G P + ++ LI
Sbjct: 382 LVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLI 424
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++ A +++ ++ DGLKPD TYT ++DG CK G + AME+ E + GV + VT
Sbjct: 398 MKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTA 457
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L E G P T+ VI A C G + L M G
Sbjct: 458 LISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKG 517
Query: 207 KIPSRTSHDMLI 218
K P ++++++
Sbjct: 518 KNPGIVTYNVVM 529
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 33/183 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+K DI ++KDG + L+ E DTA+ EM
Sbjct: 398 MKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAM----------------EMKQ 441
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---- 168
+ ++G+ D TYTA++ G K GRS +A +L E +E G+ + T ++
Sbjct: 442 EMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNG 501
Query: 169 ----------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
EM G P +T+N V+ C +G++ A +LL M G P+ +++
Sbjct: 502 DVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYN 561
Query: 216 MLI 218
+L+
Sbjct: 562 ILL 564
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EAY +++ + G+ P+ + +M + G+ A + +E + RGV
Sbjct: 223 VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQ-------- 274
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN ++ +C ++ A L LM + G P ++ I+ L
Sbjct: 275 ----------PTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGL 322
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VEEA + + K +G+ PDVYTY+ ++DG CK R+ E E +E + + V
Sbjct: 603 KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQ------- 655
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+ +N++I+A C G++ AL L M G P+ ++ LIK +
Sbjct: 656 -----------PNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 703
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 35/167 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+D+F + G S + N LL +LV NE + F +V
Sbjct: 224 LDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAF-----------------DVVC 266
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G+ PDVY +T ++ FCK G+ EA++L ++ E GV NVV
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV----------------- 309
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
TFN VI L G+ +A + M E G P+ ++ +L+K L +
Sbjct: 310 -TFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTR 355
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 34/172 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K ++E + +F+ +++ G +V FN ++ L M GR +EA
Sbjct: 284 CKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGM----------------CGRYDEA 327
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ + G++P + TY+ ++ G + R +A +L E ++G NV
Sbjct: 328 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNV--------- 378
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
I +NN+I + G ++KA+ + LM G + ++++ LIK
Sbjct: 379 ---------IVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 421
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ +A E+ N G D T A++ G C+ G+ +EA + E + RG +
Sbjct: 497 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD---- 552
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+++N +I CG K+ +A + L M + G P ++ +LI L
Sbjct: 553 --------------RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 598
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
++ RVEEA + ++ +GL+P+V+ YTA++DG+ K+G+ + LL E + V N +
Sbjct: 705 IISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKI 764
Query: 160 TLIQLL------------QRL-----EMGHIPRTITFNNVIQALCGVGKIHKAL 196
T ++ RL E G +P +IT+ I G + +A
Sbjct: 765 TYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAF 818
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 36/202 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
++E I ++ K++G V ++ ++ + +FF NH
Sbjct: 604 VEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNH 663
Query: 99 LM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L+ GR+ A E+ ++K+ G+ P+ TYT+++ G + R EA L E G
Sbjct: 664 LIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEG 723
Query: 154 VTQNV----------------VTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKAL 196
+ NV V + LL+ + ++ P IT+ +I G + +A
Sbjct: 724 LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 783
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
LL M E G +P ++ I
Sbjct: 784 RLLNEMREKGIVPDSITYKEFI 805
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+KE + +FN + + G V ++ ++ L G A ++L
Sbjct: 178 IKEAVGLFNEMVRRGHQPDVISYSTVINGLCK----------------SGNTSMALQLLR 221
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMG 171
++ G KP++ YT I+D CK N+AM+LL+E ++RG+ +VVT +L +G
Sbjct: 222 KMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLG 281
Query: 172 HI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
H+ P T+TF ++ LC G + +A + M + G P+ +++
Sbjct: 282 HLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYN 341
Query: 216 MLI 218
L+
Sbjct: 342 ALM 344
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 37/223 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ VD + K + E +F ++ K G + +N L+ + N+ D A K
Sbjct: 300 PNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKV 359
Query: 95 FS--------------NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
N L+ G R++EA +L+ + L PD TY+ +M G C+
Sbjct: 360 LDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQ 419
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI----------------PRTIT 178
VGR EA+ L E G+ +++T LL L + GH+ P +
Sbjct: 420 VGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVL 479
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +I+ + GK+ A L ++ G P+ ++ ++IK L
Sbjct: 480 YNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGL 522
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 39/232 (16%)
Query: 32 LKENPRS--LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE- 87
L+ NPR ++ RF+ I K + + N + G +V N L+ L LN
Sbjct: 84 LRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHV 143
Query: 88 ---------------QDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAI 129
Q A+ F + + G ++EA + + G +PDV +Y+ +
Sbjct: 144 VFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTV 203
Query: 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EM---GH 172
++G CK G ++ A++LL + E+G N+V ++ L EM G
Sbjct: 204 INGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGI 263
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
P +T++ ++ C +G +++A +L M +P+ + +L+ L ++
Sbjct: 264 PPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKE 315
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A ++L + + G+ PDV TY+ I+ GFC +G NEA L NE + R V N VT
Sbjct: 248 VNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTI 307
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L + G P T+N ++ C ++ +A +L +M + G
Sbjct: 308 LVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKG 367
Query: 207 KIPSRTSHDMLI 218
P S+++LI
Sbjct: 368 CAPVVHSYNILI 379
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+ G++E A E+ + DG++P + TYT ++ G K G S+EA EL + + G N
Sbjct: 488 FIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNS 547
Query: 159 VTLIQLLQ 166
+ ++Q
Sbjct: 548 CSYNVIIQ 555
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EAYE+ +++DG P+ +Y I+ GF + S+ A+ L++E + + + + T
Sbjct: 526 GLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTF 585
Query: 162 IQLLQRLE 169
Q+L LE
Sbjct: 586 -QMLLDLE 592
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RVEEA ++L + +G +P+ Y A++DG CKVG+ +EA E+ E E G + T
Sbjct: 655 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYS 714
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R LE P + + +I LC VGK +A L+ +M E
Sbjct: 715 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 774
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ +I
Sbjct: 775 GCQPNVVTYTAMI 787
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 20/137 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E A+ + +K GL DVYTYT ++D FCK G +A + NE E G T NVVT
Sbjct: 498 KMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYT 557
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G +P +T++ +I C G++ KA + M
Sbjct: 558 ALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGS 617
Query: 206 GKIPSRTSHDMLIKKLD 222
+P DM K+ D
Sbjct: 618 KDVPDV---DMYFKQYD 631
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ +EAY+++ ++ G +P+V TYTA++DGF ++G+ +ELL +GV N VT
Sbjct: 758 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVT 817
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+++EA E+ + G +YTY++++D + KV R + A ++L++ +E NVV
Sbjct: 688 VGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 747
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ L E G P +T+ +I +GKI L LL M
Sbjct: 748 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMG 807
Query: 204 EHGKIPSRTSHDMLI 218
G P+ ++ +LI
Sbjct: 808 SKGVAPNYVTYRVLI 822
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 21/157 (13%)
Query: 80 MALVMLNEQDTAVKFFSNHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
M+L L ++ ++ L VG+ EA ++ + + PD YT ++ G C+
Sbjct: 261 MSLANLRMDGFTLRCYAYSLCKVGKWREALTLM---ETENFVPDTVFYTKLISGLCEASL 317
Query: 139 SNEAMELLNEAIERGVTQNVVT----LIQLLQRLEMGHIPRTIT-------------FNN 181
EAM+ LN NVVT L L + ++G R + FN+
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ A C G A LL M + G P +++LI
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILI 414
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179
+P+V Y A++DGFCK+ R EA +LL+ G P I +
Sbjct: 637 RPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCE------------------PNQIVY 678
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+ +I LC VGK+ +A + M EHG + ++ LI +
Sbjct: 679 DALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDR 719
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA +++ FN +++ G +V + L+ A +L +V A
Sbjct: 529 CKAGLIEQARKWFNEMREVGCTPNVVTYTALIHA----------------YLKAKKVSYA 572
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
E+ + ++G P++ TY+A++DG CK G+ +A ++ ER V + + +
Sbjct: 573 NELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIF----ERMCGSKDVPDVDMYFK 628
Query: 168 L---EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ P + + ++ C + ++ +A LL M G P++ +D LI L
Sbjct: 629 QYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 685
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 52/173 (30%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------------ 148
+G++E E+L + + G+ P+ TY ++D CK G + A LL E
Sbjct: 793 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAG 852
Query: 149 --------------------AIERGVTQNVVTLIQLL-------QRLEMGH--------- 172
I + T ++L +LL QRLEM
Sbjct: 853 YRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATF 912
Query: 173 ----IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + T+N++I++LC K+ KA L M + G IP + LIK L
Sbjct: 913 SATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGL 965
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VEEA + + K +G+ PDVYTY+ ++DG CK R+ E E +E + + V
Sbjct: 590 KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQ------- 642
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+ +N++I+A C G++ AL L M G P+ ++ LIK +
Sbjct: 643 -----------PNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 690
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 35/167 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+D+F + G S + N LL +LV NE + F +V
Sbjct: 211 LDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAF-----------------DVVC 253
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G+ PDVY +T ++ FCK G+ EA++L ++ E GV NVV
Sbjct: 254 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV----------------- 296
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
TFN VI L G+ +A + M E G P+ ++ +L+K L +
Sbjct: 297 -TFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTR 342
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 34/172 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K ++E + +F+ +++ G +V FN ++ L M GR +EA
Sbjct: 271 CKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGM----------------CGRYDEA 314
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ + G++P + TY+ ++ G + R +A +L E ++G NV
Sbjct: 315 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNV--------- 365
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
I +NN+I + G ++KA+ + LM G + ++++ LIK
Sbjct: 366 ---------IVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 408
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ +A E+ N G D T A++ G C+ G+ +EA + E + RG +
Sbjct: 484 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD---- 539
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+++N +I CG K+ +A + L M + G P ++ +LI L
Sbjct: 540 --------------RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 585
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
++ RVEEA + ++ +GL+P+V+ YTA++DG+ K+G+ + LL E + V
Sbjct: 692 IISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH---- 747
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P IT+ +I G + +A LL M E G +P ++ I
Sbjct: 748 --------------PNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 792
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 19/139 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G + A E++ + GL PD+YTY +++ G CK+G EA+++L++ + R + N VT
Sbjct: 321 IGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVT 380
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF-LM 202
++ L G +P TFN++IQ LC + HK+ + LF M
Sbjct: 381 YNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLC-LSSNHKSAMDLFEEM 439
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P +++MLI L
Sbjct: 440 KGKGCRPDEFTYNMLIDSL 458
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+++A + ++G +PD +TY +++G CK+G + AME+++ + G+ ++ T
Sbjct: 287 GRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTY 346
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++G I P +T+N +I +LC ++ +A + L+
Sbjct: 347 NSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTS 406
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P + + LI+ L
Sbjct: 407 KGILPDVCTFNSLIQGL 423
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 33/187 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + + E +I + G V FN L+ L + SNH + A
Sbjct: 390 KENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLS----------SNH------KSAM 433
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLI--- 162
++ +K G +PD +TY ++D C + EA+ LL E G +NVV TLI
Sbjct: 434 DLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGF 493
Query: 163 ----------QLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
++ +E+ + R ++T+N +I LC ++ A L+ M G P +
Sbjct: 494 CKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDK 553
Query: 212 TSHDMLI 218
+++ L+
Sbjct: 554 FTYNSLL 560
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 106/259 (40%), Gaps = 46/259 (17%)
Query: 9 PTPFSV-LLVDSPSRSPSAAESLDL-KENPRSLQAQRFV-------DKIKASPLKERIDI 59
P F+ +L+DS S E+L+L KE + A+ V K ++E +I
Sbjct: 446 PDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEI 505
Query: 60 FNSIKKDGTNWSVSDFNDLLMALV--------------MLNEQDTAVKFFSNHLMV---- 101
F+ ++ G + +N L+ L M+ E KF N L+
Sbjct: 506 FDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCK 565
Query: 102 -GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT---QN 157
G +++A +++ + + G PD+ TY ++ G CK GR A LL +G+
Sbjct: 566 TGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHA 625
Query: 158 VVTLIQLL--------------QRLEMGHIPRTITFNNVIQALC-GVGKIHKALLLLFLM 202
+IQ L + L+ P IT+ V + LC G G I +A+ M
Sbjct: 626 YNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEM 685
Query: 203 YEHGKIPSRTSHDMLIKKL 221
E G IP +S ML + L
Sbjct: 686 IERGNIPEFSSFVMLAEGL 704
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 68/205 (33%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM- 130
VS FN L+ AL ++ V A M+ + + GL PD T+T IM
Sbjct: 203 VSTFNILIKALCKAHQ----------------VRPAILMMEEMPSYGLSPDETTFTTIMQ 246
Query: 131 ----------------------------------DGFCKVGRSNEAMELLNEAIERGVTQ 156
+GFCK GR ++A+ + EA+ G
Sbjct: 247 GYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRP 306
Query: 157 NVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLL 199
+ T L+ L ++GH P T+N++I LC +G+I +A+ +L
Sbjct: 307 DQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKIL 366
Query: 200 FLMYEHGKIPSRTSHDMLIKKLDQQ 224
M P+ +++ +I L ++
Sbjct: 367 DQMVSRDCSPNAVTYNAIISSLCKE 391
Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 36/182 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +K+ DI ++ G N + + L+ L GRV+ A
Sbjct: 565 KTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCK----------------AGRVQVAS 608
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
+L +++ G+ + Y ++ K R++EAM L E +++ + +T +++ R
Sbjct: 609 RLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITY-KIVYRG 667
Query: 168 ------------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+E G+IP +F + + LC + + L+ ++ E K
Sbjct: 668 LCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTLSMDDTLVKLVDMIMEKAKFS 727
Query: 210 SR 211
R
Sbjct: 728 ER 729
>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 520
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ +VG V++A ++ + + G+ PDVY+Y I++G CK R +EAM LL E + + +
Sbjct: 264 GYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIP 323
Query: 157 NVVTLIQLLQRL--------------EMGHIPR---TITFNNVIQALCGVGKIHKALLLL 199
+ VT L+ L EM H + +T+N+++ LC + KA+ L
Sbjct: 324 DTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALF 383
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M E G P++ ++ LI L
Sbjct: 384 MKMKERGIQPNKYTYTALIDGL 405
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+EAY++ + G+ PDV TYT ++ GFC G+ EA LLNE I + + N+ T
Sbjct: 166 VDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNT 225
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L + G P + ++ ++ C VG++ KA + +M + G
Sbjct: 226 LIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTG 285
Query: 207 KIPSRTSHDMLIKKL 221
P S++++I L
Sbjct: 286 VNPDVYSYNIIINGL 300
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 33/189 (17%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A L E + N + N ++ +N L+ DT K G+V+E+
Sbjct: 198 AGQLMEAFGLLNEMILKNINPNIYTYNTLI---------DTLCK-------EGKVKESKN 241
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL- 168
+L + G+KPDV Y+ +MDG+C VG +A ++ ++ GV +V + ++ L
Sbjct: 242 LLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLC 301
Query: 169 -------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
EM H IP T+T++++I LC +G+I L L M+ G+ +
Sbjct: 302 KGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLV 361
Query: 213 SHDMLIKKL 221
+++ L+ L
Sbjct: 362 TYNSLLDGL 370
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 17/128 (13%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A + M +K G++P+ YTYTA++DG CK GR + L + +G +V T
Sbjct: 376 LDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTV 435
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ L + G IP +TF +I++L + KA LL M G
Sbjct: 436 MISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKG 495
Query: 207 KIPSRTSH 214
+P R H
Sbjct: 496 LLPFRNFH 503
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G A ++L +++ +PDV Y+ I+DG CK +EA +L +E RG+ +V+T
Sbjct: 128 IGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVIT 187
Query: 161 LIQLL-------QRLEMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ Q +E + P T+N +I LC GK+ ++ LL +M
Sbjct: 188 YTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMT 247
Query: 204 EHGKIPSRTSHDMLI 218
+ G P + +L+
Sbjct: 248 KKGVKPDVVIYSILM 262
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR+ ++ + + G ++ TY +++DG CK ++A+ L + ERG+ N T
Sbjct: 338 LGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYT 397
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L G+ T+ +I LC G +AL + M
Sbjct: 398 YTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKME 457
Query: 204 EHGKIPSRTSHDMLIKKL 221
++G IP+ + +++I+ L
Sbjct: 458 DNGCIPNAVTFEIIIRSL 475
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+++ V G + D +Y +++G CK+G + A++LL +R +VV
Sbjct: 94 GEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMY 153
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM G P IT+ +I C G++ +A LL M
Sbjct: 154 STIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMIL 213
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P+ +++ LI L ++
Sbjct: 214 KNINPNIYTYNTLIDTLCKE 233
>gi|356551785|ref|XP_003544254.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09900-like [Glycine max]
Length = 603
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A E+L + GLKPDV TY+ I+DG KVG+++ A+ELL EA +G+
Sbjct: 445 KVDDAVEILKQLSFKGLKPDVITYSIIIDGLLKVGKTDLALELLEEACTKGLK------- 497
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P ITF +V+ + GK+H+A+ + + G P+ +++++I L
Sbjct: 498 -----------PNLITFTSVVGGISRKGKVHEAIKIFHFLEGLGIRPNAFAYNLIIMGL 545
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 18/114 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++E L N+ + G +PDV +YT ++ GR +AM+LL + +G + NVV
Sbjct: 309 GRLDEVIRFLKNLPSYGYQPDVISYTIVLHSLSSGGRWTDAMKLLASMLCKGCSLNVV-- 366
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
TFN +I LC G + KA +L ++ +H P+ S++
Sbjct: 367 ----------------TFNTLINFLCQKGLLGKAFNVLEMIXKHVCTPNSISYN 404
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----------------LIQL 164
PDV TYT ++D CK R +AM+LL E + + NVVT +I+
Sbjct: 258 PDVVTYTELIDAACKDSRVGQAMKLLIEMVSKECKPNVVTYNALIKGICNEGRLDEVIRF 317
Query: 165 LQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
L+ L G+ P I++ V+ +L G+ A+ LL M G + + + LI L Q
Sbjct: 318 LKNLPSYGYQPDVISYTIVLHSLSSGGRWTDAMKLLASMLCKGCSLNVVTFNTLINFLCQ 377
Query: 224 Q 224
+
Sbjct: 378 K 378
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN- 157
L VG+ + A E+L GLKP++ T+T+++ G + G+ +EA+++ + G+ N
Sbjct: 476 LKVGKTDLALELLEEACTKGLKPNLITFTSVVGGISRKGKVHEAIKIFHFLEGLGIRPNA 535
Query: 158 -----VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
++ + Q+ G P T+N +++ + G +A L +Y G +
Sbjct: 536 FAYNLIIMGLCKTQQTSRGCKPTEATYNILVKGITSEGXPKEASKLWSELYSKGPV 591
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 98 HLMV--GRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
H+++ G ++EA L + N G + P V TA++ FCK+GR+ A ++ E G
Sbjct: 121 HVLIKNGELDEASRFLEYMTNKGNIMPCVIACTALISEFCKIGRTKNATRIMGILEESGA 180
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNV-IQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ +T+ +P+ NNV I C G++ +AL +L M P+ +
Sbjct: 181 VID-ITIYNFFC------LPKK---NNVLIGGYCXSGEVEEALRVLDCMSVS---PNGIN 227
Query: 214 HDMLIKKL 221
+D +++ L
Sbjct: 228 YDTILRSL 235
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A + ++ G+ P+++TY +++GFC GR +EA LL E ER ++ +VVT
Sbjct: 262 GRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTF 321
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G IP TIT+N++I ++ A + +LM
Sbjct: 322 SVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMAT 381
Query: 205 HGKIPSRTSHDMLI 218
G P + +LI
Sbjct: 382 KGCSPDVITFSILI 395
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 37/247 (14%)
Query: 14 VLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKI--KASPLKERIDIFNSIKKDGTNWS 71
V+ ++ P S ++++ P ++ + + K S L + F I K G + S
Sbjct: 86 VVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPS 145
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMV-GRVEEAYEMLMNVKN 116
+ F+ LL L + + A+ FF N L GRV EA +L +
Sbjct: 146 LVTFSTLLHGLCVEDRVSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVE 205
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLN--EAIERGVTQNVVTLIQLLQRL------ 168
DGL+P+ TY I+DG CK+G + A+ LL E + R + NVV ++ L
Sbjct: 206 DGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSR-IKPNVVIYSAIIDGLWKDGRQ 264
Query: 169 -----------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
E G P T+N +I C G+ +A LL M+E P + +L
Sbjct: 265 TDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVL 324
Query: 218 IKKLDQQ 224
I L ++
Sbjct: 325 INALVKE 331
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EA E+ + + GL PD TY +++DG CK R +EA ++ + +G + +VVT
Sbjct: 518 GKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTF 577
Query: 162 IQLLQR--------------LEMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EMG + IT+ +I C VG I+ AL + M
Sbjct: 578 TTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMIS 637
Query: 205 HGKIP 209
G P
Sbjct: 638 SGVYP 642
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 28/202 (13%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIF----NSIKKDGTNWSVSD-FNDLLMALVMLNE--QD 89
R +AQR + ++ + + F N++ K+G + + +N++L ++ N +
Sbjct: 298 RWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYN 357
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ + FS R++ A M + G PDV T++ ++DG+C R ++ M+LL+E
Sbjct: 358 SMIDGFSKQ---NRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEM 414
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
RG+ N +T L+ + + G P +T N ++ LC GK+
Sbjct: 415 SRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKL 474
Query: 193 HKALLLLFLMYEHGKIPSRTSH 214
AL + +M + K+ SH
Sbjct: 475 KDALEMFKVM-QKSKMDLDASH 495
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 25/198 (12%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------G 102
+ S +K + I+++I DG W D + E+ + F+ + M+ G
Sbjct: 240 EVSRIKPNVVIYSAII-DGL-WKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSG 297
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R EA +L + + PDV T++ +++ K G+ EA EL NE + RG+ N +T
Sbjct: 298 RWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYN 357
Query: 163 QLL------QRLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++ RL+ G P ITF+ +I CG ++ + LL M
Sbjct: 358 SMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRR 417
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G + + ++ LI Q
Sbjct: 418 GLVANTITYTTLIHGFCQ 435
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D + K S L E +F+S+ G + V F L+
Sbjct: 537 PDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLI--------------- 581
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + VGRV + E+ + G+ + TY ++ GFC+VG N A+++ E I GV
Sbjct: 582 -NGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGV 640
Query: 155 TQNVVTLIQLLQRL 168
+ +T+ +L L
Sbjct: 641 YPDTITIRNMLTGL 654
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
++PDV TY ++ G G+ +EA EL E RG+ +P TIT
Sbjct: 500 VEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGL------------------VPDTIT 541
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+N+VI LC ++ +A + M G P + LI
Sbjct: 542 YNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLI 581
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H ++GR+E+A +L + G PDV +Y+ I+ GFC+ +A +L E + +G++
Sbjct: 421 NGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480
Query: 156 QNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+V T L+Q L +G P +T+ ++I A C G + KAL L
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQQ 224
M + G P ++++LI ++Q
Sbjct: 541 HDEMIQKGFSPDIVTYNVLINGFNKQ 566
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG +A + + +GL P+V TYT +++ CK G N AME L++ +RG+ N T
Sbjct: 321 VGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRT 380
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + +E G P IT+N +I C +G++ A LL M
Sbjct: 381 YTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMI 440
Query: 204 EHGKIPSRTSHDMLI 218
E G IP S+ +I
Sbjct: 441 ERGFIPDVVSYSTII 455
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 37/182 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------------HL 99
IF + + G + +V +N L+ + + FF +
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYC 249
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+ ++ EA+++L + GL P++ +Y +++G C+ G+ E E+L E +R
Sbjct: 250 KLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKR------- 302
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
++P +TFN +I C VG H+AL+L M ++G P+ ++ LI
Sbjct: 303 -----------RYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLIN 351
Query: 220 KL 221
+
Sbjct: 352 SM 353
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++AY+++ + +G P + TY A+++G C +GR +A LL E IERG
Sbjct: 392 GFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGF------- 444
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IP ++++ +I C ++ KA L M G P ++ LI+ L
Sbjct: 445 -----------IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL 493
Query: 222 DQQ 224
+Q
Sbjct: 494 CKQ 496
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 18/142 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME-LLNEAIERGVTQNVV 159
V + +A ++ K+ G P V +Y AI+D + +S + E + E +E GV+ NV
Sbjct: 145 VNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVY 204
Query: 160 TLIQLLQ------RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L++ LEM G +P +T+N +I A C + KI +A LL LM
Sbjct: 205 TYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLM 264
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
G P+ S++++I L ++
Sbjct: 265 ALKGLNPNLISYNVVINGLCRE 286
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E+A+++ + + G+ PDV TY++++ G CK R E +L E + G+ + VT
Sbjct: 464 LEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTS 523
Query: 164 LL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKA-LLLLFLMYEH 205
L+ + ++ G P +T+N +I + +A LLL L+YE
Sbjct: 524 LINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEE 583
Query: 206 GKIPSRTSHDMLI 218
+P+ +++ LI
Sbjct: 584 -SVPNEITYNTLI 595
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ R++EAY + K+ G++ +V Y++++DGF KVGR +EA ++ E +++G+T NV T
Sbjct: 667 IDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYT 726
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LL L ++ P IT++ +I LC + K +KA + M
Sbjct: 727 WNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQ 786
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ G P+ ++ +I L
Sbjct: 787 KQGFKPNVFTYTTMISGL 804
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA E ++F ++K+ G +N T + F G+V +A
Sbjct: 595 VKAGFAHEAYELFYTMKEQGCVLDTRAYN-------------TVIDGFCKS---GKVNKA 638
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
Y++L +K G +P V TY +++DG K+ R +EA L EA +G+ NVV L+
Sbjct: 639 YQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDG 698
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ ++ G P T+N ++ AL +I +AL+ M + P+
Sbjct: 699 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPN 758
Query: 211 RTSHDMLIKKL 221
++ +LI L
Sbjct: 759 YITYSILIHGL 769
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
IK+ L+E +++K + S + +L+ AL + D + F
Sbjct: 176 IKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNV 235
Query: 98 HLMV---------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
HL GRV+ A +L +K++ L+PDV Y +D F K G+ + A + +E
Sbjct: 236 HLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHE 295
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMG-HIPRTITFNNVIQALCGVGK 191
G+ + VT ++L + ++ +P +N +I GK
Sbjct: 296 MKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGK 355
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A LL G IPS S++ ++ L ++
Sbjct: 356 FEDAYSLLERQRRKGCIPSVVSYNCILSCLGRK 388
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV+EAY++ + + P+ YT+++ F K GR + ++ NE + G + +++ L
Sbjct: 493 GRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLL 552
Query: 162 ----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L Q ++ +G IP ++ +I L G H+A L + M E
Sbjct: 553 NTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKE 612
Query: 205 HGKIPSRTSHDMLI 218
G + +++ +I
Sbjct: 613 QGCVLDTRAYNTVI 626
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 35/174 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA L E +++F + ++ +N ++M + M G+ E+A
Sbjct: 316 CKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMG----------------YGMAGKFEDA 359
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y +L + G P V +Y I+ + G+ +EA++ E
Sbjct: 360 YSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE------------------- 400
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ IP T+N +I LC GK+ AL++ M + G P+ + ++++ +L
Sbjct: 401 MKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRL 454
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++A + + + +PD TY ++++G + GR +EA +L + ++ N V
Sbjct: 459 RLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYT 518
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L++ L +G P + N + + G+I K L +
Sbjct: 519 SLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNL 578
Query: 206 GKIPSRTSHDMLIKKL 221
G IP S+ +LI L
Sbjct: 579 GFIPDARSYTILIHGL 594
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 19/124 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------NHL 99
K + E I + + G +V +N LL ALV E A+ F N++
Sbjct: 701 KVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYI 760
Query: 100 M----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ + +A+ ++ G KP+V+TYT ++ G K G EA L +
Sbjct: 761 TYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKF 820
Query: 150 IERG 153
E+G
Sbjct: 821 KEKG 824
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G + +A ++ + G PD++TY ++DG+C+ + + A+EL+N +G+T +V+T
Sbjct: 518 MGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVIT 577
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LL L E G P IT+N +I++LC K+++A+ LL M
Sbjct: 578 YNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMK 637
Query: 204 EHGKIPSRTSHDMLI 218
G P S LI
Sbjct: 638 SKGLTPDVVSFGTLI 652
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 36/199 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMVG-- 102
+F+ + K G ++ FN + L D AV+ N ++ G
Sbjct: 317 LFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLC 376
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
RV EA E L + N G +P+ +TY +I+DG+CK G +A +L +A+ +G +
Sbjct: 377 RKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEF 436
Query: 160 TLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L+ L G P I +N +I+ LC G I AL L+ M
Sbjct: 437 TYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEM 496
Query: 203 YEHGKIPSRTSHDMLIKKL 221
E G P +++++I L
Sbjct: 497 AEKGCKPDIWTYNLIINGL 515
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A +++ + G KPD++TY I++G CK+G ++A L+ +AI +G ++ T
Sbjct: 484 GLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTY 543
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+L+ R+ G P IT+N ++ LC K + + + M E
Sbjct: 544 NTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTE 603
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ +I+ L
Sbjct: 604 KGCAPNIITYNTIIESL 620
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 38/180 (21%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------- 95
+ + E +D+ +K G V F L+ + + D A F
Sbjct: 623 SKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTA 682
Query: 96 SNHLMVGRVEEAYEMLM------NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ ++++ E M M +K +G PD YTY ++DGFCK G N+ + L E
Sbjct: 683 TYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLEN 742
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
IE+G IP TF V+ LC K+ +A+ ++ LM + +P
Sbjct: 743 IEKGF------------------IPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVP 784
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 35/203 (17%)
Query: 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98
++A RF + ++E +D F + + SV +N ++ LV
Sbjct: 159 VEAMRFYGR--KGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEF------------- 203
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
G +A+++ M +K+ ++ DVYTYT + FC+ GR A+ LL G N
Sbjct: 204 ---GYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNA 260
Query: 159 VTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
V ++ + LE P TFN ++ ALC G + ++ L
Sbjct: 261 VAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDK 320
Query: 202 MYEHGKIPSRTSHDMLIKKLDQQ 224
+ + G P+ + ++ I+ L ++
Sbjct: 321 VLKRGVCPNLFTFNIFIQGLCKE 343
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 34/192 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K + +E ++IF ++ + G ++ +N ++ +L N + +V EA
Sbjct: 586 CKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLC--NSK--------------KVNEA 629
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA------MELLNEAIERGVTQNVVTL 161
++L +K+ GL PDV ++ ++ GFCKVG + A ME + T N++
Sbjct: 630 VDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIIS 689
Query: 162 -------IQLLQRL--EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+++ RL EM G P T+ +I C G +++ L E G IP
Sbjct: 690 AFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIP 749
Query: 210 SRTSHDMLIKKL 221
S T+ ++ L
Sbjct: 750 SLTTFGRVLNCL 761
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V E+ + V G+ P+++T+ + G CK G + A+ LL G+
Sbjct: 309 GFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLR------ 362
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +T+N VI LC ++ +A L M G P+ +++ +I
Sbjct: 363 ------------PDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSII 407
>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
montevidensis]
Length = 431
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 208 VQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 268 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 324
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ ++ + GLKPD TYT ++DG CK G + A E I+ + V
Sbjct: 296 GDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + K LL M
Sbjct: 356 TALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 416 DGHVPSVVTYNVLM 429
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 143 YFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 202
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P ++TF +I C G+
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGR 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 263 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 295
>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
Length = 563
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 24/151 (15%)
Query: 80 MALVMLNEQ------DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
M LV + EQ +T H G + A+E++ +K +G P++YTY A++DGF
Sbjct: 235 MLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGF 294
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193
CK G+ EA ++L A +G+ + IT+ +I C G I
Sbjct: 295 CKKGKIQEAYKVLRMATSQGLKFD------------------KITYTILITEHCKQGHIT 336
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
AL L M E+G P ++ LI QQ
Sbjct: 337 YALDLFDRMVENGCCPDIEAYTSLISTYCQQ 367
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A+ +L + GLKP+VYT+T ++DG CK+G + A L + I+
Sbjct: 159 VKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSS---------- 208
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ P T+ +I C GK+ +A +LL M E G P+ ++ LI
Sbjct: 209 -------SYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 256
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EAY++L + GLK D TYT ++ CK G A++L + +E G ++
Sbjct: 298 GKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMVENGCCPDIEAY 357
Query: 162 IQLL-----QR------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ QR L +G +P T+ ++I C VG+ AL + M +
Sbjct: 358 TSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQ 417
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G ++ LI L ++
Sbjct: 418 NGCFADSITYGALISGLCKE 437
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ A +L+ + GLKP+ TYT ++ G CK G + A EL+N+ + G
Sbjct: 228 GKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGF------- 280
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P T+N VI C GKI +A +L + G + ++ +LI +
Sbjct: 281 -----------LPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEH 329
Query: 222 DQQ 224
+Q
Sbjct: 330 CKQ 332
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE 105
+ K + +D+F+ + ++G + + L+ + + + KFF LM+G
Sbjct: 328 EHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG--- 384
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
L P TYT+++ G+CKVGRS A+ + ++ G + +T L+
Sbjct: 385 -------------LLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALI 431
Query: 166 QRL 168
L
Sbjct: 432 SGL 434
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VEEA + + K +G+ PDVYTY+ ++DG CK R+ E E +E + + V
Sbjct: 579 KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQ------- 631
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+ +N++I+A C G++ AL L M G P+ ++ LIK +
Sbjct: 632 -----------PNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 679
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 35/167 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+D+F + G S + N LL +LV NE + F +V
Sbjct: 200 LDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAF-----------------DVVC 242
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G+ PDVY +T ++ FCK G+ EA++L ++ E GV NVV
Sbjct: 243 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV----------------- 285
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
TFN VI L G+ +A + M E G P+ ++ +L+K L +
Sbjct: 286 -TFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTR 331
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 34/172 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K ++E + +F+ +++ G +V FN ++ L M GR +EA
Sbjct: 260 CKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGM----------------CGRYDEA 303
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ + G++P + TY+ ++ G + R +A +L E ++G NV
Sbjct: 304 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNV--------- 354
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
I +NN+I + G ++KA+ + LM G + ++++ LIK
Sbjct: 355 ---------IVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 397
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ +A E+ N G D T A++ G C+ G+ +EA + E + RG +
Sbjct: 473 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD---- 528
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+++N +I CG K+ +A + L M + G P ++ +LI L
Sbjct: 529 --------------RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 574
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
++ RVEEA + ++ +GL+P+V+ YTA++DG+ K+G+ + LL E + V
Sbjct: 681 IISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH---- 736
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P IT+ +I G + +A LL M E G +P ++ I
Sbjct: 737 --------------PNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 781
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H ++GR+E+A +L + G PDV +Y+ I+ GFC+ +A +L E + +G++
Sbjct: 421 NGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480
Query: 156 QNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+V T L+Q L +G P +T+ ++I A C G + KAL L
Sbjct: 481 PDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRL 540
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQQ 224
M + G P ++++LI ++Q
Sbjct: 541 HDEMIQKGFSPDIVTYNVLINGFNKQ 566
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG +A + + +GL P+V TYT +++ CK G N AME L++ +RG+ N T
Sbjct: 321 VGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRT 380
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + +E G P IT+N +I C +G++ A LL M
Sbjct: 381 YTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMI 440
Query: 204 EHGKIPSRTSHDMLI 218
E G IP S+ +I
Sbjct: 441 ERGFIPDVVSYSTII 455
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 37/182 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------------HL 99
IF + + G + +V +N L+ + + FF +
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYC 249
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+ ++ EA+++L + GL P++ +Y +++G C+ G+ E E+L E +R
Sbjct: 250 KLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKR------- 302
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
++P +TFN +I C VG H+AL+L M ++G P+ ++ LI
Sbjct: 303 -----------RYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLIN 351
Query: 220 KL 221
+
Sbjct: 352 SM 353
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++AY+++ + +G P + TY A+++G C +GR +A LL E IERG
Sbjct: 392 GFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGF------- 444
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IP ++++ +I C ++ KA L M G P ++ LI+ L
Sbjct: 445 -----------IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL 493
Query: 222 DQQ 224
+Q
Sbjct: 494 CKQ 496
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 18/142 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME-LLNEAIERGVTQNVV 159
V + +A ++ K+ G P V +Y AI+D + +S + E + E +E GV+ NV
Sbjct: 145 VNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVY 204
Query: 160 TLIQLLQ------RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L++ LEM G +P +T+N +I A C + KI +A LL LM
Sbjct: 205 TYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLM 264
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
G P+ S++++I L ++
Sbjct: 265 ALKGLNPNLISYNVVINGLCRE 286
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E+A+++ + + G+ PDV TY++++ G CK R E +L E + G+ + VT
Sbjct: 464 LEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTS 523
Query: 164 LL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKA-LLLLFLMYEH 205
L+ + ++ G P +T+N +I + +A LLL L+YE
Sbjct: 524 LINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEE 583
Query: 206 GKIPSRTSHDMLI 218
+P+ +++ LI
Sbjct: 584 -SVPNEITYNTLI 595
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A ++ + +G PD +TY +++DG C G +N A+ L NEA+ +G+ NV+
Sbjct: 335 GMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILY 394
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ L E G IP TFN ++ LC +G + A L+ +M
Sbjct: 395 NTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMIS 454
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P + ++LI Q
Sbjct: 455 KGYFPDIFTFNILIHGYSTQ 474
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++A+++ M +++ G+ PDVY++T M FCK R + A+ LLN +G NVV
Sbjct: 125 GYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAY 184
Query: 162 I----------------QLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYE 204
+L ++ + + TFN +++ LC G + + LL + +
Sbjct: 185 CTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIK 244
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P+ ++++ I+ L Q+
Sbjct: 245 RGVLPNLFTYNLFIQGLCQR 264
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 18/140 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E A E+L + ++G+ PDVYTY ++++G CK + + ME +E+G N+ T
Sbjct: 476 KMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFN 535
Query: 163 QLLQRL--------EMGHI---------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL+ L +G + P +TF +I C G + A L M E
Sbjct: 536 ILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEA 595
Query: 206 GKIPSRT-SHDMLIKKLDQQ 224
K+ S T +++++I ++
Sbjct: 596 YKVSSSTPTYNIIIHAFTEK 615
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
L PD YTY ++DGFCK G N + LL+ +E G IP T
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVNLGYKF------------------LLEMMENGFIPSLTT 674
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
VI LC ++++A ++ M + G +P
Sbjct: 675 LGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 22/173 (12%)
Query: 68 TNWSVSDFNDLLMALVMLNE--QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYT 125
TN +++ FN+ L + N +T +K SN G + EA ++ + GL P+V T
Sbjct: 372 TNRALALFNEALGKGIKPNVILYNTLIKGLSNQ---GMILEAAQLANEMSEKGLIPEVQT 428
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-----------------RL 168
+ +++G CK+G ++A L+ I +G ++ T L+ L
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVML 488
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G P T+N+++ LC K + M E G P+ + ++L++ L
Sbjct: 489 DNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 24/176 (13%)
Query: 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------RVEEAYEMLMNVKNDGLKPDV 123
S F D++ + E+ A F+ ++++ +++EA +L +KN + PD
Sbjct: 507 CKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDA 566
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIE---------------RGVTQ--NVVTLIQLLQ 166
T+ ++DGFCK G + A L + E T+ NV +L Q
Sbjct: 567 VTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQ 626
Query: 167 RL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + P T+ ++ C G ++ L M E+G IPS T+ +I L
Sbjct: 627 EMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCL 682
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
++E +FN K G V +N L+ ++H G +E AYE++
Sbjct: 340 VQETDRLFNVAVKKGIRPDVVMYNALI----------------NSHCTGGDMERAYEIMA 383
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-- 170
++ + PD TY +M GFC +GR +EA L++E +RG+ ++V+ L+ M
Sbjct: 384 EMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKG 443
Query: 171 ---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
G P +T+N +IQ LC + + A L+ M G P +++
Sbjct: 444 DIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYI 503
Query: 216 MLIKKLDQQ 224
LI+ L +
Sbjct: 504 SLIEGLTTE 512
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 38/175 (21%)
Query: 56 RIDIFNSIKKD----GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111
++D+ ++D G +V+ +N L+ AL M R +AY +L
Sbjct: 234 KLDVALQYREDMVQRGIAMTVATYNLLMHAL----------------FMDARASDAYAVL 277
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR- 167
++ +G PDV+TY +++G+CK G +A+E+ E ++GV VT LI + R
Sbjct: 278 EEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRK 337
Query: 168 -------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
++ G P + +N +I + C G + +A ++ M E +IP
Sbjct: 338 GQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEM-EKKRIP 391
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 18/121 (14%)
Query: 102 GRVEEAYEMLMNVK-NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV+ A E++ ++ G+ PD YTY ++ G+CK+GR +A+++ +E + +G
Sbjct: 161 GRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVA---- 216
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P + +N +I C VGK+ AL M + G + ++++L+
Sbjct: 217 -------------PSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHA 263
Query: 221 L 221
L
Sbjct: 264 L 264
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMEL 145
++ T S +GR+E+A ++ + G + P Y A++ G+C VG+ + A++
Sbjct: 182 DKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQY 241
Query: 146 LNEAIERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCG 188
+ ++RG+ V T L+ L M G P T+N +I C
Sbjct: 242 REDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCK 301
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G KAL + M + G + ++ LI
Sbjct: 302 EGNEKKALEVFEEMSQKGVRATAVTYTSLI 331
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179
+P+ TY ++ GFC GR A+E++ E ERG G P T+
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERG-----------------GIAPDKYTY 186
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTSHDMLI 218
+I C +G++ A+ + M G++ PS ++ LI
Sbjct: 187 ATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALI 226
>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 907
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ H G + A ++ + N L+P V TYT++M G+C G+ N+A+ L +E +G
Sbjct: 443 LINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG 502
Query: 154 VTQNVVTLIQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKAL 196
+ ++ T LL L EM P +T+N +I+ C G + KA
Sbjct: 503 IVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAF 562
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M E G +P S+ LI L
Sbjct: 563 EFLNEMIEKGIVPDTYSYRPLIHGL 587
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Query: 19 SPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD---GTNWSVSDF 75
SPS + ++ L++ + +A V ++ + I ++N++ G N+ ++
Sbjct: 329 SPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAEL 388
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
M + L D + G+++ A L + + GLKP VY Y ++++G C
Sbjct: 389 LFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHC 448
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
K G + A L+ E I + +LE P +T+ +++ C GKI+K
Sbjct: 449 KFGDISAAESLMAEMINK--------------KLE----PTVVTYTSLMGGYCSKGKINK 490
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
AL L M G +PS + L+ L
Sbjct: 491 ALRLYHEMTGKGIVPSIYTFTTLLSGL 517
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA E++ + DG+ PD TYT ++ C+ +A+EL N E+G+
Sbjct: 801 GRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIR------ 854
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P + +N +I C G++ KA L M G P+ + + I
Sbjct: 855 ------------PDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSETTI 899
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE---------AIER 152
G +EA+ + + N+G P+ TYTA+++G CK G NEA L ++ +
Sbjct: 696 GDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTY 755
Query: 153 GVTQNVVT--------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
G +++T ++L + G + T T+N +I+ C G++ +A L+ M
Sbjct: 756 GCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIG 815
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P ++ +I +L ++
Sbjct: 816 DGVSPDCITYTTMISELCRR 835
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S G + +A ++ + +KP+ TY +++G+C+ G ++A E LNE
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEM 568
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
IE+G+ +P T ++ +I LC G+ +A
Sbjct: 569 IEKGI------------------VPDTYSYRPLIHGLCLTGQASEA 596
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 21/135 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI------------ 150
+V EA + ++ LKPDV TY ++ G CKV +E+++E +
Sbjct: 277 KVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVS 336
Query: 151 -------ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+RG + + L++ + E G P +N +I +LC +A LL M
Sbjct: 337 SLVEGLRKRGKVEEALNLVKRVA--EFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMG 394
Query: 204 EHGKIPSRTSHDMLI 218
+ G P+ ++ +LI
Sbjct: 395 KIGLCPNDVTYSILI 409
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
+L + + GLKPD YT+++D K G EA + + I G
Sbjct: 669 LLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGC--------------- 713
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+P +T+ VI LC G +++A +L M +P++ ++ + L +
Sbjct: 714 ---VPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTK 764
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+ G+ EA + + + + YT ++ GFC+ G+ EA+ + + RGV ++V
Sbjct: 589 LTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLV 648
Query: 160 T----------------LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ LL+ + + G P + + ++I A G +A + LM
Sbjct: 649 CYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLM 708
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G +P+ ++ +I L
Sbjct: 709 INEGCVPNEVTYTAVINGL 727
>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 28/186 (15%)
Query: 16 LVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
LVD ++ ++ DL E P ++ +D KA+ L E ++F+ + + G
Sbjct: 651 LVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHG 710
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------------MVGRVEEAY 108
N +V ++ L+ L D +K S L V + +EAY
Sbjct: 711 YNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAY 770
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
++++ ++ G KP+V TYTA++DGF K G+ ++ +EL E +G N VT L+
Sbjct: 771 KLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHC 830
Query: 168 LEMGHI 173
GH+
Sbjct: 831 CATGHL 836
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RVE A+ + +K G+ PDVYTYT ++D F K G +A L+E + G VVT
Sbjct: 504 RVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYT 563
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + G P IT+ +I C G I KA + M
Sbjct: 564 TLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGD 623
Query: 206 GKIP 209
IP
Sbjct: 624 ADIP 627
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 52/168 (30%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A ++L + DG +P+ Y A++DGFCK + +EA E+ ++ +E G NV T
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYS 719
Query: 163 QLLQRL----------------------------------------------------EM 170
L+ RL E
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G P +T+ +I GK+ K L L M G P+ ++ +LI
Sbjct: 780 GCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLI 827
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 49/206 (23%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA +K+ + + + +DG +V + L+ A + + A + F LM+ +
Sbjct: 536 KAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELF--ELMIAK----- 588
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE--------------AIERGV 154
G P+V TYTA++DG+CK G +A ++ I+ V
Sbjct: 589 ---------GCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNV 639
Query: 155 TQ--NVVTLIQLLQRLEMGHI-----------------PRTITFNNVIQALCGVGKIHKA 195
+ NVVT L+ L H P TI ++ +I C K+ +A
Sbjct: 640 AEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEA 699
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ M EHG P+ ++ LI +L
Sbjct: 700 QEVFHKMVEHGYNPNVYTYSSLIDRL 725
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 18/161 (11%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
+N++L A +LN+ + V F G+ E+AY+++ + +G PD TY+ ++ C
Sbjct: 442 YNEMLSAGTVLNKVNV-VSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLC 500
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI-----------------PRTI 177
R A L E GV +V T L+ I P +
Sbjct: 501 NASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVV 560
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ +I A K+ A L LM G P+ ++ LI
Sbjct: 561 TYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALI 601
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 23/135 (17%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR------SNEAMELLNEAIERGVTQNVVT 160
AY++L ++ KP Y ++ C G A + NE + G N V
Sbjct: 397 AYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVN 456
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ + L EM G +P T T++ VI LC ++ A L M
Sbjct: 457 VVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMK 516
Query: 204 EHGKIPSRTSHDMLI 218
G +P ++ +LI
Sbjct: 517 GTGVVPDVYTYTILI 531
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------------- 148
G+V++ E+ + + G P+ TYT +++ C G +EA LL E
Sbjct: 799 GKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSY 858
Query: 149 -AIERGVTQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLL 198
+ G + + + LL+ +E G P + + +I G++ AL L
Sbjct: 859 CKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALEL 910
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A E L +K+ G KP TY A++ F + + + A + E E G++ + TL Q
Sbjct: 225 ALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQ 284
Query: 167 RL-EMG-------------HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
L ++G +P TI +N +I LC +A+ L M IP+
Sbjct: 285 ALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQ 344
Query: 213 SHDMLI 218
++ +L+
Sbjct: 345 TYRILL 350
>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
Length = 767
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 17/132 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EAY + + +G+ PD +YT+++ GFC++G +A L NE ++RG VVT
Sbjct: 620 RMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYT 679
Query: 163 QL------LQRLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L + R+++ G P +T+N +I A G + KAL +L M E+
Sbjct: 680 SLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKEN 739
Query: 206 GKIPSRTSHDML 217
G +P ++ ML
Sbjct: 740 GVLPDHMTYMML 751
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 33/185 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+DIF + G + + ++ L+ M + D+A K EM+ N
Sbjct: 415 LDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLME------------EMVRN--- 459
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--------------- 161
L PD + +++ GFCK+G A+E N +E G+ ++ T
Sbjct: 460 -NLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEE 518
Query: 162 -IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ L+ ++ G P T+N VI LC K +AL L LM + +PS + LI
Sbjct: 519 ALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLID 578
Query: 220 KLDQQ 224
+Q
Sbjct: 579 GFAKQ 583
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 80/219 (36%), Gaps = 45/219 (20%)
Query: 33 KENPRSLQAQRFVDKIKA--SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90
K+ RS+ + K+ A S L+ +D+F KK G S N LL L N ++
Sbjct: 173 KDAARSVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREF 232
Query: 91 AVKFFSNHLMVG-------------------------RVEEAYEMLMNVKNDGLKPDVYT 125
F G +A E+L ++ +G P V T
Sbjct: 233 LRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVT 292
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185
Y+ + G C+VG A++ + I NV +N +I
Sbjct: 293 YSTYIYGLCRVGYVESALDFVRSLISANGLVNVY------------------CYNAIIHG 334
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LC G++ +AL +L M G P ++ +LI +Q
Sbjct: 335 LCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQ 373
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G ++EA ++L +K+ G+ PDVYTY+ ++ GFCK G + + L+ E
Sbjct: 339 GELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEE 385
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VEEA +L ++K GLKPD Y Y ++ GFC+ GR + A E L I G ++V
Sbjct: 327 GKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNY 386
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++ ++L E+G P ++N + AL G ++AL ++ +
Sbjct: 387 NTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLN 446
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ LI L
Sbjct: 447 QGIDPDEITYNSLISCL 463
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR++ A E L + +DG PD+ Y IM G C+ G++++A+E+ + E G NV +
Sbjct: 362 GRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSY 421
Query: 161 ----------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L +L+ L G P IT+N++I LC G + +A+ LL M
Sbjct: 422 NTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQS 481
Query: 205 HGKIPSRTSHDMLI 218
P+ S+++++
Sbjct: 482 GRYRPNVVSYNIIL 495
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
++IF + KD +V + L+ A ++ D A+K EML +
Sbjct: 193 LEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLD------------EML----S 236
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----LIQLLQR----- 167
GL+PD TY AI+ G CK ++A ELL RG +++T L LL R
Sbjct: 237 KGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSE 296
Query: 168 --------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +G P +T + +I LC GK+ +A+ LL M E G P +D LI
Sbjct: 297 GEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLI 355
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 70 WSVSD-FNDLLMALVMLNEQDTAVKFFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDV 123
WS D + L M L +LN+ + N L+ G V+EA E+L+++++ +P+V
Sbjct: 429 WSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNV 488
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
+Y I+ G CKV R+N+A+E+L E+G N T I L++
Sbjct: 489 VSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIE 531
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
S + ++E A +L +K+ G PDV TY ++ FC G+ + A+E+ E ++
Sbjct: 144 LISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDN 203
Query: 154 VTQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKAL 196
V+T L++ L G P T+T+N +I+ +C + KA
Sbjct: 204 CEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAF 263
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
LL + G P ++++L++ L
Sbjct: 264 ELLRSLSSRGCKPDIITYNILLRTL 288
Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+K F N +G+ E+L KPDV+ Y A++ GF K + A +L+
Sbjct: 111 IKGFFNSRNIGKATRVMEILERYG----KPDVFAYNALISGFIKANQLENANRVLDRMKS 166
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
R G +P +T+N +I + C GK+ AL + + + P+
Sbjct: 167 R------------------GFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTV 208
Query: 212 TSHDMLIK 219
++ +LI+
Sbjct: 209 ITYTILIE 216
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 36/202 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------------- 96
+KE + +FN + G +V +N ++ L AV+ F
Sbjct: 182 IKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNT 241
Query: 97 --NHLMVGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ L R V EA E L + + G+ PDV TY I+ GFC +G+ NEA L E + R
Sbjct: 242 IIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRN 301
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
V + VT L+ L E G P T+N ++ C ++ +A+
Sbjct: 302 VMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAI 361
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
+L +M G P+ +S+++LI
Sbjct: 362 KVLGIMIGKGCAPNLSSYNILI 383
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 35/184 (19%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ VD + K + E + ++ + G + +N L+ + N+ D A+K
Sbjct: 304 PDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKV 363
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+M+G+ G P++ +Y +++G+CK R NEA LL+E E+ +
Sbjct: 364 LG--IMIGK--------------GCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNL 407
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
T P T+T++ ++Q LC VG+ +AL L M G +P ++
Sbjct: 408 T------------------PDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAY 449
Query: 215 DMLI 218
+L+
Sbjct: 450 SILL 453
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR EA + + + GL PD+ Y+ ++DGFCK G +EA++LL E ER + N++
Sbjct: 424 VGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIIL 483
Query: 161 LIQLLQ------RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L++ +LE+ G P T+N +I+ L G +A M
Sbjct: 484 YTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKME 543
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
+ G +P S++++I+ Q
Sbjct: 544 DDGFLPDSCSYNVIIQGFLQ 563
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 36/207 (17%)
Query: 32 LKENPRS--LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
++ NPR ++ +F+ I K + + N + G +V N L+ L L+
Sbjct: 88 VRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHV 147
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
D AV +G ++PD T+ +++G C G+ EA+ L NE
Sbjct: 148 DFAVSVMGKMFKLG----------------IQPDAITFNTLINGLCNEGKIKEAVGLFNE 191
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMGH-IPRTITFNNVIQALCGVGK 191
+ G NV++ +++ +++E P +T+N +I +LC
Sbjct: 192 MVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRL 251
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+++A+ L M + G P +++ ++
Sbjct: 252 VNEAVEFLSEMVDRGIPPDVVTYNTIL 278
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL---IQLLQRL-------- 168
+P V + + K + + A+ L N+ GVT NV +L I L RL
Sbjct: 93 RPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVS 152
Query: 169 ------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++G P ITFN +I LC GKI +A+ L M G P+ S++ +I L
Sbjct: 153 VMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGL 211
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+ G++E A E+ + DG++PD++TY ++ G K G S+EA E + + G
Sbjct: 492 FIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGF---- 547
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQAL 186
+P + ++N +IQ
Sbjct: 548 --------------LPDSCSYNVIIQGF 561
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A L+ ++F+ + DG + +N ++ L L G +EAYE
Sbjct: 494 AGKLEVAKELFSKLSADGIRPDIWTYNVMIKGL----------------LKEGLSDEAYE 537
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
+++DG PD +Y I+ GF + S+ A++L++E + + + + T Q+L LE
Sbjct: 538 FFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTF-QMLLDLE 596
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
Q T + +G ++ E+ +K G+ P+VYTY +++ C G+ N A EL +
Sbjct: 221 QYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFD 280
Query: 148 EAIERGVTQNVVT-------LIQLLQRLEM----------GHIPRTITFNNVIQALCGVG 190
E ERGV NVVT L Q + LE G P I++N +I C +G
Sbjct: 281 EMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIG 340
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+ KA L M G+ PS ++++LI +
Sbjct: 341 NLDKASSLFNQMKSSGQSPSLATYNILIAGFSE 373
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 35/185 (18%)
Query: 75 FNDLLMALV----------MLNEQDTAVKF--FSNHLM------VGRVEEAYEMLMNVKN 116
FN+LL+ L+ + NE VK +S +M VG +++ +E+L ++
Sbjct: 120 FNNLLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEE 179
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--------------- 161
GL P+V YT ++DG CK G +L + E V N T
Sbjct: 180 MGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKD 239
Query: 162 -IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
I+L +++++ G +P T+N++I C GK++ A L M E G + +++ LI
Sbjct: 240 GIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIG 299
Query: 220 KLDQQ 224
L Q+
Sbjct: 300 GLCQE 304
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 34/172 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+++ +++ I++S++K G + + L+ L + VG ++EA
Sbjct: 407 VRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCV----------------VGDMKEA 450
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++ ++ LKP+ Y ++ G+CK G S A+ LL E E G+
Sbjct: 451 SKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGM------------- 497
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+P ++N+ I LC K +A +LL M E G PS + +M+ K
Sbjct: 498 -----VPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISK 544
Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 52/176 (29%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ +G +++A + +K+ G P + TY ++ GF + S +++ E RG++ +
Sbjct: 336 YCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPS 395
Query: 158 VVTLIQLLQRL------------------------------------------------- 168
VT L+ L
Sbjct: 396 KVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFK 455
Query: 169 ---EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
EM P + +N +I C G ++AL LL M E+G +P+ S++ I L
Sbjct: 456 SLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXIL 511
>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
fucata]
Length = 414
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 147 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 190
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 191 VQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAM 250
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 251 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 307
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ ++ + GLKPD TYT ++DG CK G + A E I+ + V
Sbjct: 279 GDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVY 338
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + K LL M
Sbjct: 339 TALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 398
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 399 DGHVPSVVTYNVLM 412
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 126 YFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 185
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P ++TF +I C G+
Sbjct: 186 MLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGR 245
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 246 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 278
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 16/137 (11%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA E+L +V + GL D YT++MDGF K G+ + A+ ++ E E+ + +VVT
Sbjct: 498 RMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYN 557
Query: 163 QLLQRL----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L EMG P T+N +I+A C G++ AL L M H
Sbjct: 558 VLINGLLEHGKYEAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHK 617
Query: 207 KIPSRTSHDMLIKKLDQ 223
+PS + + L+ L +
Sbjct: 618 IMPSSITCNTLVVGLSE 634
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 18/110 (16%)
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ +K +GL PD TY ++ G+ K+G E++ L E + +G
Sbjct: 783 ELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGF-------------- 828
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P+T T+N +I VGK+ +A LL M G PS +++D+LI
Sbjct: 829 ----VPKTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILI 874
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA E+L +K G+ P+ YT ++D K G + EA ++ + RG+T ++V
Sbjct: 287 GRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMC 346
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++ IP +IT+ +I C VG + + LL M E
Sbjct: 347 TTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEE 406
Query: 205 HGKIPSRTSHDMLI 218
P+ ++ +I
Sbjct: 407 KHINPNVITYSSII 420
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S + +EEA + + +G PDV TY++I++G CK GR +EA ELL E
Sbjct: 240 TYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREM 299
Query: 150 IERGVTQNVVTLIQLLQRL 168
+ GV N V L+ L
Sbjct: 300 KKMGVDPNHVAYTTLIDSL 318
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 38/162 (23%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE-RGVTQ 156
+ G + A +++ ++ +GL D+ +Y +++GFCK G ++A LL+E E RGV
Sbjct: 157 YCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKD 216
Query: 157 NV--------------------VTLIQLLQRL--------------EM---GHIPRTITF 179
+V +T ++ EM G +P +T+
Sbjct: 217 SVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTY 276
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++++ LC G++ +A LL M + G P+ ++ LI L
Sbjct: 277 SSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSL 318
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 20/161 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +S+ K G+ W L+ M + + +EA +M +
Sbjct: 314 LIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLN 373
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI-PRTI 177
L P+ TYTA++DG+CKVG E +E LLQ +E HI P I
Sbjct: 374 LIPNSITYTALIDGYCKVGDM--------ERVE-----------SLLQEMEEKHINPNVI 414
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T++++I G + +A+ ++ M + IP+ + +LI
Sbjct: 415 TYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILI 455
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 16/102 (15%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ ER ++F+ +K++G N S ++ L+ S + +G +E+ +
Sbjct: 778 MAERDELFDKMKENGLNPDASTYDTLI----------------SGYGKIGNKKESIRLYC 821
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ G P TY ++ F KVG+ ++A ELLNE RGV
Sbjct: 822 EMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQVRGV 863
Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 23/142 (16%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--- 161
++A +L + DG D TY A++ G+C+ +A+ + + GV+ N+VT
Sbjct: 709 KKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLL 768
Query: 162 -------IQLLQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ +R E+ G P T++ +I +G +++ L M G
Sbjct: 769 LGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGF 828
Query: 208 IPSRTSHDMLIK------KLDQ 223
+P +++++LI K+DQ
Sbjct: 829 VPKTSTYNVLISDFAKVGKMDQ 850
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA ++ + + + P+ Y Y ++DG+CK G+ A +L NE G+ N V
Sbjct: 427 GILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLF 486
Query: 162 IQLLQRLEMG 171
L+ L+ G
Sbjct: 487 DVLVNNLKRG 496
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQRLEM 170
++N ++ D TY ++ GFC+ G N+A L+ +++ + +T L++ R+ +
Sbjct: 68 LRNVDVEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGL 127
Query: 171 --------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
G I FN +I C G++ AL L+ M + G + S++
Sbjct: 128 AKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNT 187
Query: 217 LI 218
LI
Sbjct: 188 LI 189
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G ++ A E+ +K+ + P T ++ G + G +AM +LNE G+ N+V
Sbjct: 601 GELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIH 660
Query: 160 --------------TLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++Q+ ++L +MG +NN+I C + KA +L M
Sbjct: 661 RVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIR 720
Query: 205 HGKIPSRTSHDMLIK 219
G + +++ LI+
Sbjct: 721 DGFVADTVTYNALIR 735
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G + ++ N+ + G DV + ++DG+CK G + A++L+ + G+ ++V
Sbjct: 125 IGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIV- 183
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
++N +I C G+ KA LL
Sbjct: 184 -----------------SYNTLINGFCKRGEYDKAKSLL 205
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ R++EAY + K+ G++ +V Y++++DGF KVGR +EA ++ E +++G+T NV T
Sbjct: 667 IDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYT 726
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LL L ++ P IT++ +I LC + K +KA + M
Sbjct: 727 WNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQ 786
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ G P+ ++ +I L
Sbjct: 787 KQGFKPNVFTYTTMISGL 804
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA E ++F ++K+ G +N T + F G+V +A
Sbjct: 595 VKAGFAHEAYELFYTMKEQGCVLDTRAYN-------------TVIDGFCKS---GKVNKA 638
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
Y++L +K G +P V TY +++DG K+ R +EA L EA +G+ NVV L+
Sbjct: 639 YQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDG 698
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ ++ G P T+N ++ AL +I +AL+ M + P+
Sbjct: 699 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPN 758
Query: 211 RTSHDMLIKKL 221
++ +LI L
Sbjct: 759 YITYSILIHGL 769
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
IK+ L+E +++K + S + +L+ AL + D + F
Sbjct: 176 IKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNV 235
Query: 98 HLMV---------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
HL GRV+ A +L +K++ L+PDV Y +D F K G+ + A + +E
Sbjct: 236 HLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHE 295
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMG-HIPRTITFNNVIQALCGVGK 191
G+ + VT ++L + ++ +P +N +I GK
Sbjct: 296 MKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGK 355
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A LL G IPS S++ ++ L ++
Sbjct: 356 FEDAYSLLERQRRKGCIPSVVSYNCILSCLGRK 388
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV+EAY++ + + P+ YT+++ F K GR + ++ NE + G + +++ L
Sbjct: 493 GRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLL 552
Query: 162 ----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L Q ++ +G IP ++ +I L G H+A L + M E
Sbjct: 553 NTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKE 612
Query: 205 HGKIPSRTSHDMLI 218
G + +++ +I
Sbjct: 613 QGCVLDTRAYNTVI 626
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 35/174 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA L E +++F + ++ +N ++M + M G+ E+A
Sbjct: 316 CKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMG----------------YGMAGKFEDA 359
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y +L + G P V +Y I+ + G+ +EA++ E
Sbjct: 360 YSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE------------------- 400
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ IP T+N +I LC GK+ AL++ M + G P+ + ++++ +L
Sbjct: 401 MKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRL 454
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++A + + + +PD TY ++++G + GR +EA +L + ++ N V
Sbjct: 459 RLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYT 518
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L++ L +G P + N + + G+I K L +
Sbjct: 519 SLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNL 578
Query: 206 GKIPSRTSHDMLIKKL 221
G IP S+ +LI L
Sbjct: 579 GFIPDARSYTILIHGL 594
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 19/124 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------NHL 99
K + E I + + G +V +N LL ALV E A+ F N++
Sbjct: 701 KVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYI 760
Query: 100 M----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ + +A+ ++ G KP+V+TYT ++ G K G EA L +
Sbjct: 761 TYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKF 820
Query: 150 IERG 153
E+G
Sbjct: 821 KEKG 824
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 34/176 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E + + ++ + G +V ++ L+ + + A K F H+M+ +
Sbjct: 315 KEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLF--HVMITK----- 367
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
G KP++++Y +++G+CK R +EAM+L NE I +G+T
Sbjct: 368 ---------GCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLT------------- 405
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
P +++N +I C +GK+ +A L M +G +P ++ +L+ +Q
Sbjct: 406 -----PNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQ 456
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 33/188 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ E +DIF+ +K G + + + L+ L KF R +EA +L
Sbjct: 249 VNEALDIFSYMKAKGISPDIFTYTSLIQGLC---------KF-------SRWKEASALLN 292
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-- 170
+ + + PD+ T+ ++D FCK G+ +EA+ +L E GV NVVT L+ +
Sbjct: 293 EMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWT 352
Query: 171 ---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
G P ++N +I C +I +A+ L M G P+ S++
Sbjct: 353 DVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYN 412
Query: 216 MLIKKLDQ 223
LI Q
Sbjct: 413 TLIHGFCQ 420
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-VGRVEEAYEMLMNVKND 117
+ ++I K G + V M LV L+ + F N + RV+ + +L V
Sbjct: 98 LLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKL 157
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
GL+P + T+T +++G CKVG +A+EL ++ + +G P
Sbjct: 158 GLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQ------------------PDVY 199
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+N +I LC +G+ A LL M E G P+ ++ LI L
Sbjct: 200 TYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSL 243
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 78 LLMALVMLNEQDTAVKFFS--NHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
+L ++ L Q T V F + N L VG +A E+ ++ G +PDVYTY I++G C
Sbjct: 150 VLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLC 209
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTI 177
K+G + A LL + E G N+VT L+ L G P
Sbjct: 210 KIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIF 269
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ ++IQ LC + +A LL M +P + ++L+
Sbjct: 270 TYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLV 310
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + E + +FN + G + +N L+ L G++ EA
Sbjct: 385 KAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQL----------------GKLREAQ 428
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ N+ +G PD++TY+ ++DGFCK G +A L + N+V L+ +
Sbjct: 429 DLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAM 488
Query: 169 E-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
G P + +I LC G + +AL M G P
Sbjct: 489 CKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDE 548
Query: 212 TSHDMLIKKLDQQ 224
S++++I+ L Q
Sbjct: 549 ISYNVIIRGLLQH 561
>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
Length = 806
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 87/218 (39%), Gaps = 37/218 (16%)
Query: 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------- 95
F+ L D F + G S+ N L ALV + D A + F
Sbjct: 157 FITSPAQGSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRN 216
Query: 96 ------SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
S M+ G+V+ +EML + GL+P V TY +MD CK GR EA
Sbjct: 217 VALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAF 276
Query: 144 ELLNEAIERGVTQNVVT---LIQLLQRLE--------------MGHIPRTITFNNVIQAL 186
L + G+T +VVT LI L R E +G P + +N +I
Sbjct: 277 RLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWH 336
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
C G +AL L M P+ +++++ K L ++
Sbjct: 337 CRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKE 374
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 33/164 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K S ++E I + + + G + FN LL A L G++EE +
Sbjct: 514 KDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNL----------------GKMEETF 557
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------- 161
+L +K +GL+PD+ +Y I+DG CK +A E L E ++RG+ NV
Sbjct: 558 HLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGY 617
Query: 162 ---------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKA 195
I ++ ++ I P +T+ +++ +C G + +A
Sbjct: 618 GRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEA 661
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 26/190 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNS-IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98
+A+ ++ ++ LK + I+N+ I G N +S D + + Q T V + S
Sbjct: 590 KAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGS-- 647
Query: 99 LM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
LM G VEEA + + + + V YT ++ G+CK+G+ EA+ E RG
Sbjct: 648 LMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRG 707
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
++ P +T+ ++ A G +A L M G IP +
Sbjct: 708 IS------------------PNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNIT 749
Query: 214 HDMLIKKLDQ 223
+ LI + +
Sbjct: 750 YGTLIARCSE 759
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 23/128 (17%)
Query: 96 SNHLMVGRVE-----EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
SN L+ G E EA +++ + N G++ D TY ++ G CK + EA++L +
Sbjct: 470 SNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMT 529
Query: 151 ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
RG P TFN ++ A C +GK+ + LL M G P
Sbjct: 530 RRGFK------------------PDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPD 571
Query: 211 RTSHDMLI 218
S+ +I
Sbjct: 572 IVSYGTII 579
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A ++L + DG +P+ Y A++DGFCK + +EA E+ ++ +ERG NV T
Sbjct: 660 KVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYS 719
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R LE P + + +I L V K +A L+ +M E
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ +I
Sbjct: 780 GCKPNVVTYTAMI 792
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 28/186 (15%)
Query: 16 LVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
LVD ++ ++ DL E P ++ +D KA+ L E ++F+ + + G
Sbjct: 651 LVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERG 710
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------------------MVGRVEEAY 108
N +V ++ L+ L D +K S L V + +EAY
Sbjct: 711 YNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAY 770
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
++++ ++ G KP+V TYTA++DGF K G+ ++ +EL E +G N VT L+
Sbjct: 771 KLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHC 830
Query: 168 LEMGHI 173
GH+
Sbjct: 831 CATGHL 836
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RVE A+ + +K G+ PDVYTYT ++D F K G +A L+E + G VVT
Sbjct: 504 RVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYT 563
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + G P IT+ +I C G I KA + M
Sbjct: 564 TLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGD 623
Query: 206 GKIP 209
IP
Sbjct: 624 ADIP 627
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 18/161 (11%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
+N++L A +LN+ + V F G+ E+AY+++ + +G PD TY+ ++ C
Sbjct: 442 YNEMLSAGTVLNKVNV-VSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLC 500
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI-----------------PRTI 177
R A L E GV +V T L+ I P +
Sbjct: 501 NASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVV 560
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ +I A K+ A L LM G P+ ++ LI
Sbjct: 561 TYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALI 601
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA +K+ + + + +DG +V + L+ A + + A + F LM+ +
Sbjct: 536 KAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELF--ELMIAK----- 588
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
G P+V TYTA++DG+CK G +A ++ A RG + +
Sbjct: 589 ---------GCFPNVITYTALIDGYCKSGNIEKACQIY--ARMRGDADIPDVDMYFKIKN 637
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ P +T+ ++ LC K+ A LL M+ G P+ +D LI
Sbjct: 638 NVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALI 687
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 23/135 (17%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR------SNEAMELLNEAIERGVTQNVVT 160
AY++L ++ KP Y ++ C G A + NE + G N V
Sbjct: 397 AYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVN 456
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ + L EM G +P T T++ VI LC ++ A L M
Sbjct: 457 VVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMK 516
Query: 204 EHGKIPSRTSHDMLI 218
G +P ++ +LI
Sbjct: 517 GTGVVPDVYTYTILI 531
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------------- 148
G+V++ E+ + + G P+ TYT +++ C G +EA LL E
Sbjct: 799 GKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSY 858
Query: 149 -AIERGVTQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLL 198
+ G + + + LL+ +E G P + + +I G++ AL L
Sbjct: 859 CKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALEL 910
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A E L +K+ G KP TY A++ F + + + A + E E G++ + TL Q
Sbjct: 225 ALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQ 284
Query: 167 RL-EMG-------------HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
L ++G +P TI +N +I LC +A+ L M IP+
Sbjct: 285 ALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQ 344
Query: 213 SHDMLI 218
++ +L+
Sbjct: 345 TYRILL 350
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 17/115 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ A ++L + D P+V TYTA++DG C++G S +A++LL+ E+G + NVVT
Sbjct: 528 GRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTY 587
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ L G P +T+ +I LC G + KA LLL
Sbjct: 588 TALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLL 642
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+ A+E+L + + G +P+ Y A++DGFCK G+ + A E+ + + G +V T
Sbjct: 459 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYT 518
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R L+ P +T+ +I LC +G+ KAL LL LM E
Sbjct: 519 SLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEK 578
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P+ ++ LI L +
Sbjct: 579 GCSPNVVTYTALIDGLGK 596
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE+A+ + +K G+ PDVYTYT ++D FCK G +A L E G + VVT
Sbjct: 303 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 362
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
L+ + ++ G P +T+ ++ LC G I KA
Sbjct: 363 ALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 413
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T +L +V +A ++ + + G +P+ TY A++DG CK G ++A E+ +
Sbjct: 360 TYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 419
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
I + + R + P +T+ ++ LC K+ A LL M G P
Sbjct: 420 IGTSDSADSDFYFPCEDRHTLA--PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEP 477
Query: 210 SRTSHDMLI 218
+ +D LI
Sbjct: 478 NHIVYDALI 486
>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
brasiliensis]
Length = 427
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 160 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 203
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 204 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 263
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 264 EIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 320
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ ++ + GLKPD TYT ++DG CK G + A E I+ + + V
Sbjct: 292 GDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAY 351
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + K LL M
Sbjct: 352 TALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQR 411
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 412 DGHVPSVVTYNVLM 425
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 139 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 198
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 199 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 258
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 259 VDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKK 291
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 17/152 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T H GRV+ A E+ + + L PD+ TY ++ G CK G +A L++E
Sbjct: 245 TFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEM 304
Query: 150 IERGVTQNVVTLIQLLQRL--------EMGHIPRTI---------TFNNVIQALCGVGKI 192
+G+ + +T L+ H R I + +I LC G+
Sbjct: 305 SMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRS 364
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A +L M G P+ ++ M+I + ++
Sbjct: 365 VDAEKMLREMLSVGLKPNXRTYTMIINEFCKK 396
>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
microcephala]
Length = 431
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 208 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 268 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 324
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ ++ + GLKPD TYT ++DG CK G + A E I+ + + V
Sbjct: 296 GDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + K LL M
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 416 DGHVPSVVTYNVLM 429
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 143 YFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 202
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 263 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 295
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S H +G++ A + + +GLKP+V YT+++ G+CK G + A L +E +G++
Sbjct: 433 SGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGIS 492
Query: 156 QNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLL 198
N T L+ L E IP +T+N +I+ C G +A L
Sbjct: 493 PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFEL 552
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L M E G +P ++ LI L
Sbjct: 553 LDEMVEKGLVPDTYTYRPLISGL 575
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 29/196 (14%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
K L +++ + G + + F L+ L N A K F
Sbjct: 471 CKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNE 530
Query: 97 --------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
H G A+E+L + GL PD YTY ++ G C GR +EA E +N+
Sbjct: 531 VTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMND 590
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+G Q L +E G +P +T+ +I LC +G + KA LL M +
Sbjct: 591 L--QGEQQK-------LNEIE-GCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSL 640
Query: 209 PSRTSHDMLIKKLDQQ 224
P++ ++ + L +
Sbjct: 641 PNQNTYACFLDYLTSE 656
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 37/221 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P VD + K + D+ N +KK G S+ +N L+ ++ + D A
Sbjct: 318 PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESL 377
Query: 95 FSN-------------------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
F+N G+++ A L + G+K VY Y++++ G CK
Sbjct: 378 FNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCK 437
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------------RL--EM---GHIPRTIT 178
+G+ A L +E I G+ NVV L+ RL EM G P T T
Sbjct: 438 LGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYT 497
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
F +I LC ++ +A L M E IP+ ++++LI+
Sbjct: 498 FTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIE 538
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR++EA E+L+N+ + G+ PD +Y+ I+ +C+ G EA++L + RGV
Sbjct: 690 LGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVN----- 744
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T+ +N +I C G++ KA L M G P+R +++ LI
Sbjct: 745 -------------PDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLI 789
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 31/210 (14%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---- 96
A D+I +S L+ + ++ ++ + S+ + D + A ++ +++ S
Sbjct: 199 ALHLFDEIVSSGLRPDVYVYTAVVR-----SLCELKDFIRAREVIGRMESSGCDLSVATY 253
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N + G RV EA E+ + GL+ DV TY ++ G CKV E++NE IE
Sbjct: 254 NVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIE 313
Query: 152 RGVT----------------QNVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHK 194
G N+ + L+ ++ + G P +N +I ++C GK+ +
Sbjct: 314 FGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDE 373
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G P+ ++ +LI ++
Sbjct: 374 AESLFNNMGHKGLFPNDVTYSILIDSFCKR 403
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 18/197 (9%)
Query: 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98
L A+ F I++S I I N + K+G +F + L + T H
Sbjct: 203 LYAEMFRMNIRSSLYTFNIMI-NVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGH 261
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+ G+ + A + +K+ GL+PD YTY + + G CK GR EA L+ + +E G+ N
Sbjct: 262 CLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNA 321
Query: 159 VTLIQLLQ--------------RLEM---GHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
VT L+ R EM G + +T+N I AL G++ A ++
Sbjct: 322 VTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKE 381
Query: 202 MYEHGKIPSRTSHDMLI 218
M E G +P +H++LI
Sbjct: 382 MREKGMMPDAVTHNILI 398
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F M GR+ +A M+ ++ G+ PD T+ +++G+C+ G + A LL+E + +G
Sbjct: 362 FIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKG 421
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ +VT L+ L + G +P I FN +I C G I +A
Sbjct: 422 IQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAF 481
Query: 197 LLLFLMYEHGKIPSRTSHDMLIK 219
LL M +P +++ L++
Sbjct: 482 QLLKEMDNMKVLPDEITYNTLMQ 504
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 33/191 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + +KE +F+ I+++G + FN L+ H G ++ A+
Sbjct: 438 KRNRMKEADALFSKIQQEGLLPDIIVFNALI----------------DGHCANGNIDRAF 481
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-- 166
++L + N + PD TY +M G+C+ G+ EA +LL+E RG+ + ++ L+
Sbjct: 482 QLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGY 541
Query: 167 ------------RLEM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
R EM G P +T+N +IQ LC + A LL M G P
Sbjct: 542 SKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDD 601
Query: 212 TSHDMLIKKLD 222
+++ +I+ ++
Sbjct: 602 STYLSIIEAME 612
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 35/182 (19%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML-MN 113
E ++ F IK+ G ++ N +L + LN A ++ EM MN
Sbjct: 164 EALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYA------------EMFRMN 211
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-------- 165
+++ +YT+ +++ CK G+ +A E + GV NVVT ++
Sbjct: 212 IRSS-----LYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGK 266
Query: 166 -QRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
QR + G P T+N+ I LC G++ +A L+ M E G +P+ +++
Sbjct: 267 FQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNA 326
Query: 217 LI 218
LI
Sbjct: 327 LI 328
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
Q T + +G ++ E+ +K G+ P+VYTY +++ C G+ N A EL +
Sbjct: 234 QYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFD 293
Query: 148 EAIERGVTQNVVT-------LIQLLQRLEM----------GHIPRTITFNNVIQALCGVG 190
E ERGV NVVT L Q + LE G P I++N +I C +G
Sbjct: 294 EMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIG 353
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+ KA L M G+ PS ++++LI +
Sbjct: 354 NLDKASSLFNQMKSSGQSPSLATYNILIAGFSE 386
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 35/200 (17%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALV----------MLNEQDTAVKF--FSNHLM------V 101
FN + G + FN+LL+ L+ + NE VK +S +M V
Sbjct: 118 FNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMIKGCCEV 177
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++ +E+L ++ GL P+V YT ++DG CK G +L + E V N T
Sbjct: 178 GYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTY 237
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+L +++++ G +P T+N++I C GK++ A L M E
Sbjct: 238 TVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRE 297
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G + +++ LI L Q+
Sbjct: 298 RGVACNVVTYNTLIGGLCQE 317
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 20/119 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E+A+++ +++ GL D+Y Y ++ G C VG EA +
Sbjct: 425 IEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS-------------------K 465
Query: 164 LLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
L + L+ H+ P + +N +I C G ++AL LL M E+G +P+ S++ I+ L
Sbjct: 466 LFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQIL 524
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 34/172 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+++ +++ I++S++K G + + L+ L + VG ++EA
Sbjct: 420 VRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCV----------------VGDMKEA 463
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++ ++ LKP+ Y ++ G+CK G S A+ LL E E G+
Sbjct: 464 SKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGM------------- 510
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+P ++N+ IQ LC K +A +LL M E G PS + +M+ K
Sbjct: 511 -----VPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISK 557
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V+ A E+ + +PDV+TY +MDG CK R +EA+ LL+E G + VT
Sbjct: 201 LGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVT 260
Query: 161 LIQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L G +P +T+N +I LC GK+ KA+ LL M
Sbjct: 261 FNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMV 320
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+P+ ++ LI L +Q
Sbjct: 321 ASKCVPNDVTYGTLINGLVKQ 341
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ EEA + + G +P++ Y+A++DG C+ G+ +EA E+L E + +G T N T
Sbjct: 378 KSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYS 437
Query: 163 QLLQRL--------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L++ EM +P I ++ +I LC GK+ +A+++ M
Sbjct: 438 SLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGR 497
Query: 206 GKIPSRTSHDMLIKKL 221
G P ++ +I L
Sbjct: 498 GLRPDVVAYSSMIHGL 513
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA E+L + N G P+ +TY++++ GF K G S +A+ + E + N +
Sbjct: 412 GKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICY 471
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLL--FLM 202
L+ L E G + P + ++++I LC G + L L L
Sbjct: 472 SVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLC 531
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
E P ++++L++ L +Q
Sbjct: 532 QESDSQPDVVTYNILLRALCKQ 553
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA M ++ GL+PDV Y++++ G C G ++L NE + +
Sbjct: 482 GKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQ--------- 532
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
E P +T+N +++ALC I A+ LL M + G P + ++ + L
Sbjct: 533 -------ESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 585
Query: 222 DQQ 224
++
Sbjct: 586 REK 588
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 18/136 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R E YE + K + + P+V ++ ++ CK+G + A+E+ E + +V T
Sbjct: 169 RALEFYECGVGGKTN-ISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYC 227
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L EM G P ++TFN +I LC G + + L+ M+
Sbjct: 228 TLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLK 287
Query: 206 GKIPSRTSHDMLIKKL 221
G +P+ +++ +I L
Sbjct: 288 GCVPNEVTYNTIINGL 303
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---V 158
G++++A +L + P+ TY +++G K GRS + + LL+ ERG N
Sbjct: 307 GKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAY 366
Query: 159 VTLIQLL--------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI L + +E G P + ++ +I LC GK+ +A +L M
Sbjct: 367 STLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVN 426
Query: 205 HGKIPSRTSHDMLIK 219
G P+ ++ LIK
Sbjct: 427 KGCTPNAFTYSSLIK 441
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 36/190 (18%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSN--------------HLMVG-----RVEEAYEML 111
+V FN ++ A+ L D A++ F LM G R++EA +L
Sbjct: 187 NVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLL 246
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL---------- 161
++ +G P T+ +++G CK G +L++ +G N VT
Sbjct: 247 DEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLK 306
Query: 162 ------IQLLQRLEMGH-IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+ LL R+ +P +T+ +I L G+ + LL + E G + ++
Sbjct: 307 GKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAY 366
Query: 215 DMLIKKLDQQ 224
LI L ++
Sbjct: 367 STLISGLFKE 376
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 37/190 (19%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE--AYEMLMN--------------VK 115
V FN L+ L + E D A +FF N G + +Y L+N +K
Sbjct: 214 VYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLK 273
Query: 116 ND----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------ 165
D G+ PDV TYT+I+ G+CK+G A EL +E + G+ N T L+
Sbjct: 274 EDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKV 333
Query: 166 -----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+ L +G +P +TF ++I C G++++ L L M P+ ++
Sbjct: 334 GNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTY 393
Query: 215 DMLIKKLDQQ 224
+LI L ++
Sbjct: 394 AVLINALCKE 403
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 37/198 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL------------------ 99
+ N + G S +N+LL LV N D AV F HL
Sbjct: 165 NFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGL 224
Query: 100 -MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-AIERGVTQN 157
+G +++A+E N+ N G PD+ +Y +++GFC+V ++ +LL E + +GV+ +
Sbjct: 225 CRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPD 284
Query: 158 VVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V+T ++ + + G P TFN +I VG + A+++
Sbjct: 285 VITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYE 344
Query: 201 LMYEHGKIPSRTSHDMLI 218
M G +P + LI
Sbjct: 345 KMLLLGCLPDVVTFTSLI 362
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 37/165 (22%)
Query: 91 AVKFFS---NHLMVGRVEEAYEMLMN-----------------VKNDGLKPDVYTYTAIM 130
+KFF HL + Y++LM +++DG+ PD ++
Sbjct: 92 GLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLV 151
Query: 131 DGFCKVGRSNEAMELLNEAIERG---------------VTQNVVTLIQLLQR--LEMGHI 173
+ ++G+ + A LNE G V QN+V LL R LE +
Sbjct: 152 SSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFV 211
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +FN +I+ LC +G+I KA M G P S++ LI
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLI 256
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA L ++K+ + P + Y ++DGFCK G+ +EA ++ E E+
Sbjct: 405 RIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCR------- 457
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P ITF +I C G++ +A+ + M E +P + + LI L
Sbjct: 458 -----------PDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCL 505
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 22/182 (12%)
Query: 41 AQRFVDKIKASPLKERIDIFN----SIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
A D++ +S +K FN K G S + ++ L L + T
Sbjct: 304 ASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLID 363
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ G V + ++ +K L P+VYTY +++ CK R EA L
Sbjct: 364 GYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRH-------- 415
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
L+ E+ +P+ +N VI C GK+ +A ++ M E P + + +
Sbjct: 416 --------LKSSEV--VPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTI 465
Query: 217 LI 218
LI
Sbjct: 466 LI 467
>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 512
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 38/207 (18%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
NP VD K +KE ++F + K ++ +N L+ ++NE + A
Sbjct: 276 NPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAES 335
Query: 94 FFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F+ +G V+EA ++ + + PDV TY +++DG C
Sbjct: 336 IFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLC 395
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
K GR + A++L+ E +R G P IT+N+++ ALC + K
Sbjct: 396 KSGRISYALKLIGEMHDR------------------GQPPNIITYNSLLDALCKNHHVDK 437
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A+ LL + +H PS ++++LI L
Sbjct: 438 AIELLTKLKDHNIQPSVCTYNILINGL 464
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 17/161 (10%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F+D ++AL Q + + VG+ + A EML + ++ DV Y I+DG C
Sbjct: 161 FHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVC 220
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMGHI-PRTI 177
K N+A + +E + + + VVT I LL ++ + +I P
Sbjct: 221 KDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVY 280
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TF+ ++ A C GK+ +A + +M + P+ +++ L+
Sbjct: 281 TFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLM 321
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 74/174 (42%), Gaps = 52/174 (29%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
++G++++A +L + + + P VYT++ ++D FCK G+ EA + +++ V N+V
Sbjct: 256 IMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIV 315
Query: 160 TL---------------------------------------------------IQLLQRL 168
T ++L + +
Sbjct: 316 TYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEM 375
Query: 169 EMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I P +T+N++I LC G+I AL L+ M++ G+ P+ +++ L+ L
Sbjct: 376 HCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDAL 429
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V++A E+L +K+ ++P V TY +++G CK GR +A ++ + + G +V T
Sbjct: 434 HVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYT 491
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 41/195 (21%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119
FN I + S+ L+ L + FSN L G +A + +K L
Sbjct: 97 FNGIASNLVTLSI-----LINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCL 151
Query: 120 KPDVY-------------------TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV- 159
K D++ +Y +++G CKVG++ A+E+L + V +VV
Sbjct: 152 KGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVM 211
Query: 160 --TLIQLLQRLEMGH--------------IPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
T+I + + ++ + P +T+N +I LC +G++ A+ LL M
Sbjct: 212 YNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMI 271
Query: 204 EHGKIPSRTSHDMLI 218
P+ + +L+
Sbjct: 272 LENINPTVYTFSILV 286
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 17/115 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ A ++L + D P+V TYTA++DG C++G S +A++LL+ E+G + NVVT
Sbjct: 463 GRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTY 522
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ L G P +T+ +I LC G + KA LLL
Sbjct: 523 TALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLL 577
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+ A+E+L + + G +P+ Y A++DGFCK G+ + A E+ + + G +V T
Sbjct: 394 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYT 453
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R L+ P +T+ +I LC +G+ KAL LL LM E
Sbjct: 454 SLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEK 513
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P+ ++ LI L +
Sbjct: 514 GCSPNVVTYTALIDGLGK 531
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE+A+ + +K G+ PDVYTYT ++D FCK G +A L E G + VVT
Sbjct: 238 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 297
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKAL 196
L+ ++ G P +T+ ++ LC G I KA
Sbjct: 298 ALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAF 348
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T +L +V +A ++ + + G +P+ TY A++DG CK G ++A E+ +
Sbjct: 295 TYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 354
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
I + + R + P +T+ ++ LC K+ A LL M G P
Sbjct: 355 IGTSDSADSDFYFPCEDRHTLA--PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEP 412
Query: 210 SRTSHDMLI 218
+ +D LI
Sbjct: 413 NHIVYDALI 421
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 41/223 (18%)
Query: 21 SRSPSAAES-------LDLKENPRSLQAQRFV-DKIKASPLKERIDIFNSIKKDGTNWSV 72
+R PS E+ LD P + Q + D I++ L ++F+ + + G +V
Sbjct: 90 NRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTV 149
Query: 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132
FN L+ + ++ + A + + G + +A G+ PDVYTY A + G
Sbjct: 150 VTFNTLMSGMCKASDLNNA------NALRGLMAKA----------GIAPDVYTYGAFIQG 193
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ--------------RLEM---GHIPR 175
CK GR +AME+ E ERG+ N V L L+ R EM G
Sbjct: 194 LCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKAD 253
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +N ++ C V + A ++ M + G P + ++ LI
Sbjct: 254 LVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLI 296
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++ A +++ ++ DGLKPD TYT ++DG CK G + AME+ E + GV + VT
Sbjct: 270 MKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTA 329
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L E G P T+ VI A C G + L M G
Sbjct: 330 LISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKG 389
Query: 207 KIPSRTSHDMLI 218
K P ++++++
Sbjct: 390 KNPGIVTYNVVM 401
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 33/183 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+K DI ++KDG + L+ E DTA+ EM
Sbjct: 270 MKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAM----------------EMKQ 313
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---- 168
+ ++G+ D TYTA++ G K GRS +A +L E +E G+ + T ++
Sbjct: 314 EMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNG 373
Query: 169 ----------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
EM G P +T+N V+ C +G++ A +LL M G P+ +++
Sbjct: 374 DVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYN 433
Query: 216 MLI 218
+L+
Sbjct: 434 ILL 436
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EAY +++ + G+ P+ + +M + G+ A + +E + RGV
Sbjct: 95 VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQ-------- 146
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN ++ +C ++ A L LM + G P ++ I+ L
Sbjct: 147 ----------PTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGL 194
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
++ G V+EA +++ + + GLKPD++TY I+ G CK G + A E++ +G +V
Sbjct: 239 MLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDV 298
Query: 159 VTLIQLLQRL------EMGHI-----------PRTITFNNVIQALCGVGKIHKALLLLFL 201
++ LL+ L E G P +T++ +I LC GKI +A+ LL L
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 358
Query: 202 MYEHGKIPSRTSHDMLIKKLDQQ 224
M E G P S+D LI ++
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCRE 381
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++EEA +L +K GL PD Y+Y ++ FC+ GR + A+E L I G
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC------- 399
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P + +N V+ LC GK +AL + + E G P+ +S++ + L
Sbjct: 400 -----------LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++A +L +++ PD TY ++ C G+ + A+++LN+ + V+T
Sbjct: 173 RIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYT 232
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L++ L G P T+N +I+ +C G + +A ++ +
Sbjct: 233 ILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELK 292
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P S+++L++ L Q
Sbjct: 293 GCEPDVISYNILLRALLNQ 311
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 97/234 (41%), Gaps = 45/234 (19%)
Query: 15 LLVDSPSRSPSAAESLDL----KENPRSLQAQRFVDKIKASPLKERIDI----FNSIKKD 66
+L+ + R E+++L KE + A + I A + R+D+ ++ D
Sbjct: 338 ILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE-------------------EA 107
G + ++N +L L + D A++ F VG A
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
M++ + ++G+ PD TY +++ C+ G +EA ELL + ++
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVD----------------MRS 501
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
E P +T+N V+ C +I A+ +L M +G P+ T++ +LI+ +
Sbjct: 502 CEFH--PSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 18/100 (18%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179
+PDV+ Y A+++GFCK+ R ++A +L+ + + P T+T+
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS------------------PDTVTY 196
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
N +I +LC GK+ AL +L + P+ ++ +LI+
Sbjct: 197 NIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIE 236
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+E+A +L ++ +G +P+ TYT +++G G EAMEL N+ + I
Sbjct: 523 RIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR----------I 572
Query: 163 QLLQRLEMGHIPRTITFNNVIQ 184
+ + RT NV+Q
Sbjct: 573 DAISEYSFKRLHRTFPLLNVLQ 594
>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
Length = 592
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 37/191 (19%)
Query: 65 KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------NHLMVGRV---------- 104
K G ++ FN LL L N+ AV F N +M G V
Sbjct: 135 KKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHT 194
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A+++L ++ KP+ Y+ ++D FCK G + A LLNE ++ + ++ T L
Sbjct: 195 QKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTL 254
Query: 165 LQR--------------LEMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ LEM H+ P TFN+VI LC GK+ A ++ M E G
Sbjct: 255 IDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGV 314
Query: 208 IPSRTSHDMLI 218
P +++M+I
Sbjct: 315 DPDVITYNMII 325
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+A E++ + G+ PDV TY I+DG+ G+ + A E+ + I + + N+++
Sbjct: 297 GKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISY 356
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+Q+ + + + G P +T N ++ L +G+ A M
Sbjct: 357 NILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLS 416
Query: 205 HGKIPSRTSHDMLI 218
G IP +H L+
Sbjct: 417 AGHIPDLYTHCTLL 430
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQ 156
G++++A+ + GL PDV TYTA++ G+C+ G +EA ++L + + G T
Sbjct: 472 GKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTY 531
Query: 157 NVVT 160
NV+
Sbjct: 532 NVIV 535
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR----- 103
+ + E + + I + G S+ N LL L L +A FF L G
Sbjct: 365 RQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLY 424
Query: 104 --------------VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
VEEA ++ ++ YTA++DG CK G+ ++A
Sbjct: 425 THCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAH------ 478
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
T + LI L P IT+ +I C G + +A +L M ++G +
Sbjct: 479 ----ATFEKLPLIGLH--------PDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLA 526
Query: 210 SRTSHDMLIK 219
+++++++
Sbjct: 527 DNRTYNVIVR 536
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------------- 96
L+E + + ++ G + +N L+ A E D A + S
Sbjct: 168 LEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFN 227
Query: 97 ---NHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
N L GR+E A ++ + +GL PDV +Y ++ G+CKVG +E++ + +E +R
Sbjct: 228 SMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQR 287
Query: 153 GVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
G+ +VVT L+ Q E G +TF +I C G + A
Sbjct: 288 GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 347
Query: 196 LLLLFLMYEHGKIPSRTSHDMLI 218
LL + M + G PS ++ LI
Sbjct: 348 LLAVEEMRKCGIQPSVVCYNALI 370
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + +GR++ A E++ ++ +KPDV TY+ I+ G+CKVG + A +L + +++G
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428
Query: 154 VTQNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
V + +T L++ L++G P T+ +I C G + KAL
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 488
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
L M G +P ++ +LI L +
Sbjct: 489 SLHDEMIRKGVLPDVVTYSVLINGLSK 515
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 33/194 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K L E + +F+ + + G V F L+ A G +E+A
Sbjct: 269 CKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCK----------------AGNLEQA 312
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LI-- 162
++ ++ GL+ + T+TA++DGFCK G ++A+ + E + G+ +VV LI
Sbjct: 313 VALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALING 372
Query: 163 -----------QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+L++ +E + P +T++ +I C VG + A L M + G +P
Sbjct: 373 YCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPD 432
Query: 211 RTSHDMLIKKLDQQ 224
++ LI+ L ++
Sbjct: 433 AITYSSLIRGLCEE 446
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ +A E+ N+ G++PD +TYT ++DG CK G +A+ L +E I +GV
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV-------- 499
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P +T++ +I L + +A LLF +Y +P +D L+
Sbjct: 500 ----------LPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NVVT 160
GR+EEA ++ +++ G P+ TY ++ FC+ G + A +++ E G + N+VT
Sbjct: 166 GRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT 225
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L EM G P +++N ++ C VG +H++L + M
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 285
Query: 204 EHGKIPSRTSHDMLI 218
+ G +P + LI
Sbjct: 286 QRGLVPDVVTFTSLI 300
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL-- 164
A L ++ G+ P+VYTY ++ C GR EA+ ++ + G N VT L
Sbjct: 136 ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVA 195
Query: 165 ----------------LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
L R E P +TFN+++ LC G++ A + M G
Sbjct: 196 AFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLA 255
Query: 209 PSRTSHDMLI 218
P S++ L+
Sbjct: 256 PDVVSYNTLL 265
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
T H G VE+A + + G+ PDV TY+ +++G K R+ EA LL
Sbjct: 470 TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLL 526
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E A E+ + DG+ P+V T ++DG CK GR N A+E NE +G+ N VT
Sbjct: 432 IEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTA 491
Query: 164 LL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ + LE G P I + +I L GK+ +A +L M E G
Sbjct: 492 LIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAG 551
Query: 207 KIPSRTSHDMLI 218
P S ++LI
Sbjct: 552 FSPDIVSFNVLI 563
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 42/234 (17%)
Query: 16 LVDSPSRSPSAAESLDLKEN--------PRSLQAQRFVDK-IKASPLKERIDIFNSIKKD 66
L+D + E L L E P ++ +D KAS ++ ++F+ + KD
Sbjct: 386 LIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKD 445
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G +V N L+ D K GR+ A E ++ GLK + TY
Sbjct: 446 GVPPNVVTLNTLV---------DGMCKH-------GRINGAVEFFNEMQGKGLKGNAVTY 489
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------E 169
TA++ FC V +AMEL +E +E G + + + L+ L E
Sbjct: 490 TALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKE 549
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
G P ++FN +I C K+ +A +L M G P +++ LI +
Sbjct: 550 AGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSK 603
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++EAYEML ++N G+KPD TY ++ F K G + A L+ + ++ G+ VVT
Sbjct: 571 KLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYG 630
Query: 163 QLLQRLEM-GHI-----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + G++ P T+ +N +I +LC ++ AL L+ M
Sbjct: 631 ALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKV 690
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ + + + K L ++
Sbjct: 691 KGVKPNTNTFNAMFKGLQEK 710
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 98/267 (36%), Gaps = 80/267 (29%)
Query: 36 PRSLQAQRFVDKIKASPLKERI-DIFNSIKKDGTNWSVSDFNDLLMALVMLNE------- 87
P S+ + + ++ S +R D+ + + K G + N LL AL E
Sbjct: 268 PNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTL 327
Query: 88 ---------QDTAVKF--FSNHLM-VGRVEEAYEMLMNVKNDG------LKPDVYTYTAI 129
Q V F NHL RV+EA E+ + N G ++PDV TY +
Sbjct: 328 LAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKM-NGGESNGFLVEPDVITYNTL 386
Query: 130 MDGFCKVGRSNE------------------------------------AMELLNEAIERG 153
+DG CKVGR E A EL ++ + G
Sbjct: 387 IDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDG 446
Query: 154 VTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
V NVVTL L+ + EM G +T+ +I+A C V I KA+
Sbjct: 447 VPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAM 506
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
L M E G P + LI L Q
Sbjct: 507 ELFDEMLEAGCSPDAIVYYTLISGLSQ 533
>gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 913
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 20/126 (15%)
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
AV+ F N L + ++A +L +++ +G+ PD++ YTA++ FCK G +A LNE +
Sbjct: 309 AVRGFCNEL---KFDKAESVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMM 365
Query: 151 ERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIH 193
+GV N V + +L L +G +++NNV+ ALC +GK+
Sbjct: 366 SKGVKVNCVIVGSILHCLCELGMHSEVVDQFNQFKSLGLFLDGVSYNNVVDALCKLGKLE 425
Query: 194 KALLLL 199
+A+ LL
Sbjct: 426 EAITLL 431
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA--VKFFSNHLMVGRVEE 106
+ + LKE +D+F+ +K+ G DL+ V+L+ A K +S G E+
Sbjct: 663 RMNCLKEAVDLFHDMKQRGIK------PDLVTFTVLLDGHHKAHIKKVYSAANAKGGNED 716
Query: 107 AYEML---MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++ L +K+ +KPDV YT ++DG+CKV ++A+ + +E IERG+ +++T
Sbjct: 717 IFDALAIWTEMKDTEIKPDVIFYTVLIDGYCKVDSLHDAIGVFDEMIERGLEPDIITYTA 776
Query: 164 LLQR-LEMGHIPRTI 177
LL + G + R +
Sbjct: 777 LLSGCCQRGDVDRAV 791
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 37/160 (23%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------------- 95
E +D FN K G +N+++ AL L + + A+
Sbjct: 391 EVVDQFNQFKSLGLFLDGVSYNNVVDALCKLGKLEEAITLLDEMKMKQINMDVMHYTTLI 450
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ + G V +A+++ ++ +G++ DV TY ++ GFC+ G + EA+ LL+
Sbjct: 451 NGYCCQGNVVDAFKVFEEMRENGIEIDVVTYDVLVSGFCRNGLATEALNLLD-------- 502
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
Q+L+ P +IT+N V+++LC GK+ +A
Sbjct: 503 ------YMQTQKLK----PNSITYNVVVESLCMGGKVKEA 532
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 35/154 (22%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ + ++ML+ G PD+ YT ++ +C++ EA++L ++ +RG+ ++VT
Sbjct: 634 KAQSVFDMLLK---RGWTPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFT 690
Query: 163 QLLQRLEMGHI--------------------------------PRTITFNNVIQALCGVG 190
LL HI P I + +I C V
Sbjct: 691 VLLDGHHKAHIKKVYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLIDGYCKVD 750
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+H A+ + M E G P ++ L+ Q+
Sbjct: 751 SLHDAIGVFDEMIERGLEPDIITYTALLSGCCQR 784
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G EA +L ++ LKP+ TY +++ C G+ EA + N +IE N +
Sbjct: 492 GLATEALNLLDYMQTQKLKPNSITYNVVVESLCMGGKVKEAEAVFN-SIEDKSLDNYFAM 550
Query: 162 I-------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
I +L RL + GH+ R+ + N+++ LC G L+LL M
Sbjct: 551 INGYCKANHTAGAAKLFFRLSVKGHVKRSCCY-NLLKNLCEEGDNDGILMLLETMLNLNV 609
Query: 208 IPSRTSHDMLIKKL 221
PS+ + L L
Sbjct: 610 EPSKFIYGKLFTSL 623
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 22/150 (14%)
Query: 94 FFSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F N LM +++ A + +K GL P+ YTY ++ C G EAM ++ E
Sbjct: 199 FICNFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLEEAMYVIKE 258
Query: 149 AIERGVTQNVVTLI----------------QLLQRLEMGHIPRTI-TFNNVIQALCGVGK 191
E G+T Q+LQ + +IP + + ++ C K
Sbjct: 259 MEESGITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKGANIPLDMYAYTVAVRGFCNELK 318
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KA +L M + G +P + LI +
Sbjct: 319 FDKAESVLRDMEKEGMVPDMHCYTALICRF 348
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +++ EM+ + G + DVYTY +++ G CK+G +EA+E+L+ + R N VT
Sbjct: 315 TGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVT 374
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L G +P TFN++IQ LC A+ L M
Sbjct: 375 YNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMK 434
Query: 204 EHGKIPSRTSHDMLIKKL 221
E G P ++ +LI+ L
Sbjct: 435 EKGCDPDEFTYSILIESL 452
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 27/209 (12%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDG--TNWSVSDFNDLLMALVMLNEQDTAVKF 94
R +A + +++ S + ++N++ DG N V D D+ + ML ++V +
Sbjct: 457 RLKEALMLLKEMELSGCARNVVVYNTLI-DGLCKNNRVGDAEDIFDQMEMLGVSRSSVTY 515
Query: 95 FSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ G RVEEA +++ + +GLKPD +TYT ++ FC+ G A +++
Sbjct: 516 --NTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNM 573
Query: 150 IERGVTQNVV---TLI-------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
G ++V TLI +LL+ ++M G + +N VIQALC +
Sbjct: 574 TLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRT 633
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A+ L M E G P ++ ++ + L
Sbjct: 634 KEAMRLFREMMEKGDPPDVITYKIVFRGL 662
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA + + +G PD T+ A+++G C+ G + +E+++ +E+G +V T
Sbjct: 283 GRIEEALRFI--YEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTY 340
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++G I P T+T+N +I LC + A L ++
Sbjct: 341 NSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTS 400
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P + + LI+ L
Sbjct: 401 KGVLPDVCTFNSLIQGL 417
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 33/170 (19%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
V FN L+ L + + ++ A++ F +K G PD +TY+ +++
Sbjct: 407 VCTFNSLIQGLCLTSNREIAMELFEE----------------MKEKGCDPDEFTYSILIE 450
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVV---TLI-------------QLLQRLEMGHIPR 175
C R EA+ LL E G +NVV TLI + ++EM + R
Sbjct: 451 SLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSR 510
Query: 176 -TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
++T+N +I LC ++ +A L+ M G P + ++ ++K QQ
Sbjct: 511 SSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQ 560
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 31/174 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA+ LK + + + D VS FN L+ AL ++ A+
Sbjct: 175 VKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAIL-------------- 220
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
ML ++ N GL+PD T+T +M GF + A+ + +E G V++ L+
Sbjct: 221 --MLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNG 278
Query: 168 L---------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L E G P +TFN ++ LC G I + L ++ M E G
Sbjct: 279 LCKEGRIEEALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKG 332
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ +K+ +++ + + + G V +N L+ L L G ++EA
Sbjct: 314 RTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKL----------------GEIDEAV 357
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+L ++ + +P+ TY ++ CK A EL +GV +V T L+Q L
Sbjct: 358 EILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGL 417
Query: 169 -----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
E G P T++ +I++LC ++ +AL+LL M G +
Sbjct: 418 CLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNV 477
Query: 212 TSHDMLIKKL 221
++ LI L
Sbjct: 478 VVYNTLIDGL 487
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 38/176 (21%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------- 102
+K DI ++ +G + + L+ L D A K + M G
Sbjct: 563 IKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNP 622
Query: 103 ---------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS-NEAMELLNEAIER 152
R +EA + + G PDV TY + G C G EA++ E +E+
Sbjct: 623 VIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEK 682
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
G+ +P +F + + LC + + L+ ++ E G+
Sbjct: 683 GI------------------LPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKGRF 720
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 37/203 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------------- 96
L+E + + ++ G + +N L+ A E D A + S
Sbjct: 26 LEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFN 85
Query: 97 ---NHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
N L GR+E A ++ + +GL PDV +Y ++ G+CKVG +E++ + +E +R
Sbjct: 86 SMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQR 145
Query: 153 GVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
G+ +VVT L+ Q E G +TF +I C G + A
Sbjct: 146 GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 205
Query: 196 LLLLFLMYEHGKIPSRTSHDMLI 218
LL + M + G PS ++ LI
Sbjct: 206 LLAVEEMRKCGIQPSVVCYNALI 228
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + +GR++ A E++ ++ +KPDV TY+ I+ G+CKVG + A +L + +++G
Sbjct: 227 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 286
Query: 154 VTQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKAL 196
V + +T L++ L++G P T+ +I C G + KAL
Sbjct: 287 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKAL 346
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
L M G +P ++ +LI L +
Sbjct: 347 SLHDEMIRKGVLPDVVTYSVLINGLSK 373
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 33/194 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K L E + +F+ + + G V F L+ A G +E+A
Sbjct: 127 CKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCK----------------AGNLEQA 170
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LI-- 162
++ ++ GL+ + T+TA++DGFCK G ++A+ + E + G+ +VV LI
Sbjct: 171 VALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALING 230
Query: 163 -----------QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+L++ +E + P +T++ +I C VG + A L M + G +P
Sbjct: 231 YCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPD 290
Query: 211 RTSHDMLIKKLDQQ 224
++ LI+ L ++
Sbjct: 291 AITYSSLIRGLCEE 304
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ +A E+ N+ G++PD +TYT ++DG CK G +A+ L +E I +GV
Sbjct: 306 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV-------- 357
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P +T++ +I L + +A LLF +Y +P +D L+
Sbjct: 358 ----------LPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 403
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NVVT 160
GR+EEA ++ +++ G P+ TY ++ FC+ G + A +++ E G + N+VT
Sbjct: 24 GRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT 83
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L EM G P +++N ++ C VG +H++L + M
Sbjct: 84 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 143
Query: 204 EHGKIPSRTSHDMLI 218
+ G +P + LI
Sbjct: 144 QRGLVPDVVTFTSLI 158
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL------------- 164
G+ P+VYTY ++ C GR EA+ ++ + G N VT L
Sbjct: 5 GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64
Query: 165 -----LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L R E P +TFN+++ LC G++ A + M G P S++ L+
Sbjct: 65 ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLL 123
Score = 36.2 bits (82), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
T H G VE+A + + G+ PDV TY+ +++G K R+ EA LL
Sbjct: 328 TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLL 384
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A+++L ++ + G PD +YT ++ G C+ R ++A ELLNE +
Sbjct: 332 GRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCP------ 385
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN I LC G I +A++L+ M EHG +++ L+
Sbjct: 386 ------------PNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGF 433
Query: 222 DQQ 224
Q
Sbjct: 434 CVQ 436
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 20/150 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF G +EEA E++ + G P++ TY ++DG K S +A+ELL+ +
Sbjct: 497 VSFFCQK---GFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVS 553
Query: 152 RGVTQNVVTL----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHK 194
+GV+ +V+T +QL ++ +G P+ + +N ++ LC +I
Sbjct: 554 KGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDN 613
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ M +G +P+ +++ +LI+ L +
Sbjct: 614 AIDFFAYMVSNGCMPNESTYIILIEGLAHE 643
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
E+A +L ++ G P++ TY I++G C+ GR ++A ELLN G + V+ L
Sbjct: 195 EQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTL 254
Query: 165 LQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L+ L E +P +TF+ +I+ C G + +A+ +L M EHG
Sbjct: 255 LKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGC 314
Query: 208 IPSRTSHDMLIKKLDQQ 224
+ T +++I + +Q
Sbjct: 315 ATNTTLCNIVINSICKQ 331
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A E+L + + G +PD +YT ++ G C R ++ EL E +E+ N VT
Sbjct: 227 GRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTF 286
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
IQ+L+++ E G T N VI ++C G++ A LL M
Sbjct: 287 DMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGS 346
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P S+ ++K L
Sbjct: 347 YGCNPDTISYTTVLKGL 363
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
+ PD YTYT ++ C GR +A+ LL++ + RG NVVT LL+ +
Sbjct: 139 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAM 198
Query: 169 ----EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
EM G P +T+N +I +C G++ A LL + +G P S+ L+K L
Sbjct: 199 AVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGL 258
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A +L ++ G +P+V TYT +++ C+ +AM +L+E +G T N+VT
Sbjct: 157 GRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTY 216
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+LL RL G P T+++ +++ LC + L M E
Sbjct: 217 NVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMME 276
Query: 205 HGKIPSRTSHDMLIK 219
+P+ + DMLI+
Sbjct: 277 KNCMPNEVTFDMLIR 291
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 33/205 (16%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-----------HLMV 101
+++ I + + + G V +N L+ + D+A++ F + L+
Sbjct: 404 IEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLT 463
Query: 102 G-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
G R++ A E++ + P+V T+ ++ FC+ G EA+EL+ + +E G T
Sbjct: 464 GLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTP 523
Query: 157 NVVTLIQLL----------QRLEMGH-------IPRTITFNNVIQALCGVGKIHKALLLL 199
N++T LL LE+ H P ITF+++I L +I +A+ L
Sbjct: 524 NLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLF 583
Query: 200 FLMYEHGKIPSRTSHDMLIKKLDQQ 224
++ + G P ++ ++ L ++
Sbjct: 584 HVVQDIGMRPKAVVYNKILLGLCKR 608
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A ++ + G V TY A+++GFC G + A+EL + T TL
Sbjct: 402 GLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTL 461
Query: 162 I-------------QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ +L+ + G P +TFN ++ C G + +A+ L+ M EHG
Sbjct: 462 LTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGC 521
Query: 208 IPSRTSHDMLIKKLDQ 223
P+ +++ L+ + +
Sbjct: 522 TPNLITYNTLLDGITK 537
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-RLEMGHI-- 173
DG PDVY T ++ C+ GR+++A +L A G +V L+ GH+
Sbjct: 70 DGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDA 129
Query: 174 -----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+ +I+ LC G++ AL LL M G P+ ++ +L++ +
Sbjct: 130 ARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAM 188
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K ++E + +F+ ++ G +N +L+ L E D A+ FF AY
Sbjct: 572 KEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFF-----------AY 620
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ ++G P+ TY +++G G EA +LL+ RGV
Sbjct: 621 -----MVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGV 661
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA ++L + GL PD+YTY AI+ G CK G A EL+ +G +V++
Sbjct: 221 GGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISY 280
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+ EM G P +T++ +I +LC G+I +A+ +L +M E
Sbjct: 281 NILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIE 340
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P S+D LI L ++
Sbjct: 341 KELTPDTYSYDPLISALCKE 360
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----L 161
E +M + +PDV+ Y A++ GFCKV R A ++LN RG ++VT +
Sbjct: 120 EKASRVMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMI 179
Query: 162 IQLLQRLEMG-------------HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
L R ++G +P IT+ +I+A G I++A+ LL M G +
Sbjct: 180 GSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLL 239
Query: 209 PSRTSHDMLIKKLDQQ 224
P +++ +I+ + ++
Sbjct: 240 PDMYTYNAIIRGMCKE 255
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 19/131 (14%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV--------------KFFSNHLM 100
+ ++IFN ++ G +VS +N ++ AL ++ A+ + N L+
Sbjct: 400 QALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLI 459
Query: 101 V-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G VEEA +L +++ G +P V +Y ++ G CKV R ++A+ + E IE+G
Sbjct: 460 SCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCR 519
Query: 156 QNVVTLIQLLQ 166
N T I L++
Sbjct: 520 PNETTYILLIE 530
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ A ++ + ++G PD+ Y I+ CK G +N+A+E+ N+ G NV +
Sbjct: 361 GRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSY 420
Query: 162 IQLLQRL--------EMGHIPRTI---------TFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L +G +P I T+N++I LC G + +A+ LL M +
Sbjct: 421 NTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQ 480
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ S+++++ L
Sbjct: 481 SGFRPTVISYNIVLLGL 497
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA +L + L PD Y+Y ++ CK GR + A+ +++ I G ++V
Sbjct: 326 GRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNY 385
Query: 162 IQLL----------QRLE-------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L Q LE MG P ++N +I AL G +AL ++ M
Sbjct: 386 NTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMIS 445
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ LI L
Sbjct: 446 KGVDPDEITYNSLISCL 462
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 23/149 (15%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------- 148
S V R+E A ++L +K G PD+ TY ++ C + A+++L++
Sbjct: 145 SGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCM 204
Query: 149 -------------AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
+E G+ + + L ++L R G +P T+N +I+ +C G + +A
Sbjct: 205 PTVITYTILIEATIVEGGINEAMKLLEEMLAR---GLLPDMYTYNAIIRGMCKEGMVERA 261
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L+ + G P S+++L++ Q
Sbjct: 262 AELITSLTSKGCKPDVISYNILLRAFLNQ 290
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR----------------LEMGHIPRTI 177
CK G+ NE++ L + +G T +V+ +L++ LE P
Sbjct: 79 CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVF 138
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N VI C V +I A +L M G +P +++++I L
Sbjct: 139 AYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSL 182
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
++E I + + +++ G +V +N +L+ L + D A+ F+ EM+
Sbjct: 468 VEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFA------------EMI- 514
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
G +P+ TY +++G G EAMEL N R V
Sbjct: 515 ---EKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDV 553
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 37/190 (19%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE--AYEMLMN--------------VK 115
V FN L+ L + E D A +FF N G + +Y L+N +K
Sbjct: 214 VYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLK 273
Query: 116 ND----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------ 165
D G+ PDV TYT+I+ G+CK+G A EL +E + G+ N T L+
Sbjct: 274 EDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKV 333
Query: 166 -----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+ L +G +P +TF ++I C G++++ L L M P+ ++
Sbjct: 334 GNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTY 393
Query: 215 DMLIKKLDQQ 224
+LI L ++
Sbjct: 394 AVLINALCKE 403
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 37/198 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL------------------ 99
+ N + G S +N+LL LV N D AV F HL
Sbjct: 165 NFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGL 224
Query: 100 -MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-AIERGVTQN 157
+G +++A+E N+ N G PD+ +Y +++GFC+V ++ +LL E + +GV+ +
Sbjct: 225 CRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPD 284
Query: 158 VVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V+T ++ + + G P TFN +I VG + A+++
Sbjct: 285 VITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYE 344
Query: 201 LMYEHGKIPSRTSHDMLI 218
M G +P + LI
Sbjct: 345 KMLLLGCLPDVVTFTSLI 362
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 37/165 (22%)
Query: 91 AVKFFS---NHLMVGRVEEAYEMLMN-----------------VKNDGLKPDVYTYTAIM 130
+KFF HL + Y++LM +++DG+ PD ++
Sbjct: 92 GLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLV 151
Query: 131 DGFCKVGRSNEAMELLNEAIERG---------------VTQNVVTLIQLLQR--LEMGHI 173
+ ++G+ + A LNE G V QN+V LL R LE +
Sbjct: 152 SSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFV 211
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +FN +I+ LC +G+I KA M G P S++ LI
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLI 256
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA L ++K+ + P + Y ++DGFCK G+ +EA ++ E E+
Sbjct: 405 RIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCR------- 457
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P ITF +I C G++ +A+ + M E +P + + LI L
Sbjct: 458 -----------PDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCL 505
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 22/182 (12%)
Query: 41 AQRFVDKIKASPLKERIDIFN----SIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
A D++ +S +K FN K G S + ++ L L + T
Sbjct: 304 ASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLID 363
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ G V + ++ +K L P+VYTY +++ CK R EA L
Sbjct: 364 GYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRH-------- 415
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
L+ E+ +P+ +N VI C GK+ +A ++ M E P + + +
Sbjct: 416 --------LKSSEV--VPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTI 465
Query: 217 LI 218
LI
Sbjct: 466 LI 467
>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
aristata]
Length = 431
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 208 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 268 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 324
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ ++ + GLKPD TYT ++DG CK G + A E I+ + + V
Sbjct: 296 GDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + K LL M
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 416 DGHVPSVVTYNVLM 429
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 143 YFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 202
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 263 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 295
>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
Length = 699
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ +EA ML + G PD T++ ++DG CK G +A +L + I+RG+ +
Sbjct: 140 GKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAF 199
Query: 162 IQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++QRL G P + FN VI C + A LL +M
Sbjct: 200 ETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMI 259
Query: 204 EHGKIPSRTSHDMLIKKL 221
E G +P+ + +LI L
Sbjct: 260 EKGCVPNVFTFTILITGL 277
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
++ AY++L + G P+V+T+T ++ G CK R EA +LL + + G + NVVT
Sbjct: 248 LDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYST 307
Query: 161 ----------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L QL++R P +T N +I LC +I +A L M E
Sbjct: 308 VINGLCKQGQVDDAYELFQLMERRNCP--PNVVTHNILIDGLCKAKRIEEARQLYHRMRE 365
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ LI L
Sbjct: 366 TGCAPDIITYNSLIDGL 382
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA E + D PDV TYTA++ CK G+ +EA +L E + +G
Sbjct: 106 GRVVEALEHFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCA------ 158
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+TF+ +I LC G +A +L + + G S + + +I++L
Sbjct: 159 ------------PDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRL 206
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
RV EA ++L + G P+V TY+ +++G CK G+ ++A EL R NVVT
Sbjct: 282 RVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHN 341
Query: 161 -LI-------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LI QL R+ E G P IT+N++I LC ++ +A L + E
Sbjct: 342 ILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPES 401
Query: 206 G 206
G
Sbjct: 402 G 402
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 20/150 (13%)
Query: 31 DLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
D K NP S V+ + + + + + + + G +VS +N LL L L D
Sbjct: 544 DRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWD 603
Query: 90 TAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
A + F + G +V++AYE++ + G PD+ T ++
Sbjct: 604 EATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLI 663
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+CK GR++ A +LL E E G+ N T
Sbjct: 664 GGYCKSGRADLARKLLEEMTEAGLEPNDTT 693
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-----VT 155
VG+ ++A ++L + G V +Y ++ G ++ R +EA ++ + G T
Sbjct: 564 VGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEIST 623
Query: 156 QNVVT-----------LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
NVV +L+QR+ ++G P T N +I C G+ A LL M
Sbjct: 624 VNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMT 683
Query: 204 EHGKIPSRTSHDML 217
E G P+ T+HD+L
Sbjct: 684 EAGLEPNDTTHDLL 697
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 16/135 (11%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R +EA + N P+ +TY ++ GF G + A++LL E G N V
Sbjct: 37 RRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHT 96
Query: 163 QLLQRL-EMGHI---------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L++ L + G + P +T+ ++ ALC GK +A +L M G
Sbjct: 97 TLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQG 156
Query: 207 KIPSRTSHDMLIKKL 221
P + LI L
Sbjct: 157 CAPDTVTFSTLIDGL 171
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I +F+S+ G +N ++ + ++ D A+ E +++ ++
Sbjct: 498 IQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVL-------------EQVIDKRD 544
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQRLE---- 169
P A+++ C+VG++++A +LL++ ERG V + L+ L RL+
Sbjct: 545 RKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDE 604
Query: 170 ----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G P T N VI LC K+ A L+ M + G P + + LI
Sbjct: 605 ATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLI 663
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 90/216 (41%), Gaps = 40/216 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
KA ++E +++ +++ G + +N L+ L + D A + F
Sbjct: 348 CKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAAN 407
Query: 97 ---------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+ +GR+ +A + + + G PD+ TYT+++ +CK R+ E +EL+
Sbjct: 408 AVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVE 467
Query: 148 EAIERGVTQNVVTLIQLLQRL-EMGHIPRTI----------------TFNNVIQALCGVG 190
E +G V TL +L L E H R I +N V++ +
Sbjct: 468 EMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARAS 527
Query: 191 KIHKALLLLFLMYEHGKI---PSRTSHDMLIKKLDQ 223
K KAL +L + + PS ++ D L++ L Q
Sbjct: 528 KHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQ 563
>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
Length = 1091
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 119/251 (47%), Gaps = 45/251 (17%)
Query: 10 TPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKI----KASPLKERIDIFNSIKK 65
T F + V+ RS A + ++E SL A + I K+ E ++++ ++ +
Sbjct: 141 TIFGGVGVEGGLRSAPVALPV-MREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVE 199
Query: 66 DGTNWSVSDFNDLLMA----------LVMLNEQDT-AVK--FFSNHLMV------GRVEE 106
DG + SV ++ L++A L +LNE + VK +S + + R +E
Sbjct: 200 DGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDE 259
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA-------------------MELLN 147
AY +L +++ G KPDV T+T I+ C GR ++A + LL+
Sbjct: 260 AYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLD 319
Query: 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ + G +Q+VV + + + G+ +++ V+ ALC VG++ +AL + M E G
Sbjct: 320 KCGDSGDSQSVVEVWNAM--VADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGM 377
Query: 208 IPSRTSHDMLI 218
P + S++ LI
Sbjct: 378 SPEQYSYNSLI 388
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 33/180 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
++++N++ DG N ++ + ++ AL VGRV+EA + +K
Sbjct: 331 VEVWNAMVADGYNDNIVSYTAVVDALCQ----------------VGRVDEALAVFDEMKE 374
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI-------------Q 163
G+ P+ Y+Y +++ GF K + A+EL N G + N T + +
Sbjct: 375 KGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLK 434
Query: 164 LLQRLE----MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+QR E G +P N V+ +L G G++ A + + + G P ++ M+IK
Sbjct: 435 AIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIK 494
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--------- 153
R+E+A ++ N+ ++G P TY ++DG K G+ +A L NE +E G
Sbjct: 851 RLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYN 910
Query: 154 -------VTQNVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ N + QL +++ E G P ++ +I LC G+++ L ++E
Sbjct: 911 ILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHEL 970
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P +++LI L +
Sbjct: 971 GLEPDLIVYNLLIDGLGK 988
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
EA E+ + DG+ P V TY+ +M F K + + LLNE RGV NV + +
Sbjct: 189 EAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICI 248
Query: 166 QRL-------EMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L E HI P +T +IQ LC G++ A + + M +
Sbjct: 249 RVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQK 308
Query: 209 PSRTSHDMLIKK 220
P R ++ L+ K
Sbjct: 309 PDRVTYITLLDK 320
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 37/193 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
+K+ L++ ID++ ++ +G + + + LL L+ + A F+
Sbjct: 847 VKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNC 906
Query: 97 --------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
H + G E ++ + G+ PD+ +YT ++D C GR N+
Sbjct: 907 TIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDG------ 960
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
L Q E+G P I +N +I L +I +A+ L M + G I
Sbjct: 961 ------------LCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGII 1008
Query: 209 PSRTSHDMLIKKL 221
P+ +++ LI L
Sbjct: 1009 PNLYTYNSLILHL 1021
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 34/176 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KAS E ++ F+ + + G V N L+ DT K G+ EA+
Sbjct: 498 KASKADEAMNFFSDMVESGCVPDVLALNSLI---------DTLYKG-------GKGNEAW 541
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ +K ++P TY ++ G + G+ E M+LL E +T+ +
Sbjct: 542 QLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEE-----MTRTI---------- 586
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ P IT+N V+ L G+++ A+ +L+ M E G P +S++ ++ L ++
Sbjct: 587 ---YPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKE 639
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 33/181 (18%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E +FN K G + +N L+ LV N D A F+ +
Sbjct: 749 EAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTE----------------M 792
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QRL 168
K G PD +TY I+D K R E +++ E +G VT ++ +RL
Sbjct: 793 KRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRL 852
Query: 169 EM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
E G P T+ ++ L GK+ A L M E+G P+ T +++L
Sbjct: 853 EQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNIL 912
Query: 218 I 218
+
Sbjct: 913 L 913
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ A + +K G+ PD TYT ++ K +++EAM ++ +E G +V+ L
Sbjct: 465 GRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLAL 524
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
QL +L EM P T+N ++ L GK+ + + LL
Sbjct: 525 NSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLL 579
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ + + GL+PD+ Y ++DG K R EA+ L NE ++G+ N+ T
Sbjct: 955 GRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTY 1014
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G P T+N +I+ G A M
Sbjct: 1015 NSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIV 1074
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ L +L
Sbjct: 1075 GGCQPNSSTYMQLPNQL 1091
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 17/162 (10%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
DL+ V+ T F + G + A L ++ G+ + YTY ++ K
Sbjct: 125 DLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLIYFLVKS 184
Query: 137 GRSNEAMELLNEAIERGVT----------------QNVVTLIQLLQRLEM-GHIPRTITF 179
G EAME+ +E G++ ++V T++ LL +E G P ++
Sbjct: 185 GFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSY 244
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I+ L + +A +L M + G P +H ++I+ L
Sbjct: 245 TICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVL 286
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S H +G++ A + + +GLKP+V YT+++ G+CK G + A L +E +G++
Sbjct: 433 SGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGIS 492
Query: 156 QNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLL 198
N T L+ L E IP +T+N +I+ C G +A L
Sbjct: 493 PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFEL 552
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L M E G +P ++ LI L
Sbjct: 553 LDEMVEKGLVPDTYTYRPLISGL 575
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 37/221 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P VD + K + D+ N +KK G S+ +N L+ ++ + D A
Sbjct: 318 PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESL 377
Query: 95 FSN-------------------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
F+N G+++ A L + G+K VY Y++++ G CK
Sbjct: 378 FNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCK 437
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------------RL--EM---GHIPRTIT 178
+G+ A L +E I G+ NVV L+ RL EM G P T T
Sbjct: 438 LGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYT 497
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
F +I LC ++ +A L M E IP+ ++++LI+
Sbjct: 498 FTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIE 538
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR++EA E+L+N+ + G+ PD +Y+ I+ +C+ G EA++L + RGV
Sbjct: 787 LGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVN----- 841
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T+ +N +I C G++ KA L M G P+R +++ LI
Sbjct: 842 -------------PDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLI 886
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-------- 153
G ++ A+ + + ++G P+V TYTA+++G CK+G ++A L E +
Sbjct: 684 GNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTY 743
Query: 154 --------VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
N+ IQL L G + T+T+N +I+ C +G+I +A +L M +
Sbjct: 744 ACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDS 803
Query: 206 GKIPSRTSHDMLI 218
G P S+ +I
Sbjct: 804 GISPDCISYSTII 816
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
GRV EA E + +++ + K + ++A++ G+CK GR ++A++ E + RGV ++V
Sbjct: 579 GRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCY 638
Query: 160 --------------TLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++I LL+++ + G P + + +I A G + A L +M
Sbjct: 639 SVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVS 698
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ ++ LI L
Sbjct: 699 EGCLPNVVTYTALINGL 715
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---- 96
A D+I +S L+ + ++ ++ + S+ + D + A ++ +++ S
Sbjct: 199 ALHLFDEIVSSGLRPDVYVYTAVVR-----SLCELKDFIRAREVIGRMESSGCDLSVATY 253
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N + G RV EA E+ + GL+ DV TY ++ G CKV E++NE IE
Sbjct: 254 NVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIE 313
Query: 152 RGVT----------------QNVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHK 194
G N+ + L+ ++ + G P +N +I ++C GK+ +
Sbjct: 314 FGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDE 373
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A L M G P+ ++ +LI
Sbjct: 374 AESLFNNMGHKGLFPNDVTYSILI 397
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA +LM + + L+P+ Y+Y+ +MDGFC+ G +A+ + NE + G+ NVV
Sbjct: 373 GQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVV-- 430
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T N++++ LC VG AL + LM + G P S+ L+
Sbjct: 431 ----------------THNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLL 471
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G+V++A ++ ++ G PD +TY ++ G+ G N+A L +E ++RG+ N++T
Sbjct: 723 GKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITY 782
Query: 161 --LI-------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI +L +L + G P I++N +I C G +AL L M +
Sbjct: 783 NALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLK 842
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G PS ++ LI +Q
Sbjct: 843 EGISPSLITYSALIYGFCKQ 862
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 34/172 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+K + +F+++ K G S+ N LL +LV E A+ + + + R+
Sbjct: 164 IKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDH---INRL-------- 212
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
G+ PDV+T + +++ +CK G N A++ + E G NVV
Sbjct: 213 -----GIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVV------------- 254
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
T+N++I +G + +A ++L LM E G + ++ + +LIK +Q
Sbjct: 255 -----TYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQ 301
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA---------------MELLNEAI 150
EA E +K G +PD TY ++DG+CK+G EA +EL N I
Sbjct: 517 EAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLI 576
Query: 151 ERGVTQNVVT--LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
G+ ++ T ++ LL + + G P +T+ +I C G++ KA F M E G
Sbjct: 577 G-GLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGF 635
Query: 208 IPS 210
P+
Sbjct: 636 APN 638
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G EA ++ + +G+ P + TY+A++ GFCK G +A LL+E E QN+
Sbjct: 828 GNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAKF 887
Query: 162 IQLLQ-RLEMGHIPRTITFNNVIQ 184
++L++ ++ G + + +N++
Sbjct: 888 VKLVEGHVKCGEVKKIAKLHNMMH 911
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 85/210 (40%), Gaps = 34/210 (16%)
Query: 30 LDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
+D P S +D + + + I ++N + + G +V N LL L +
Sbjct: 386 VDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAF 445
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ A+ + HLM+ R G+ PD +Y ++D K+G A+ L N+
Sbjct: 446 EDALHVW--HLMLKR--------------GVTPDEVSYCTLLDLLFKMGEFFRALALWND 489
Query: 149 AIERGVTQNVV---TLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGK 191
+ RG ++ T+I ++ E+G P +T+ +I C +G
Sbjct: 490 ILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGN 549
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +A + M + +PS ++ LI L
Sbjct: 550 VEEAFKVKEKMEKEAILPSIELYNSLIGGL 579
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 69/137 (50%), Gaps = 18/137 (13%)
Query: 103 RVEEAYEMLMNV-KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
++EEA ++L + +++G+ D Y Y ++DG+C+V + ++A+ L +E + G+ N+
Sbjct: 303 KLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFIC 362
Query: 162 IQLL------------QRLEMGHI-----PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ +RL M + P + +++ ++ C G + KA+ + M
Sbjct: 363 NALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLR 422
Query: 205 HGKIPSRTSHDMLIKKL 221
G + +H+ L+K L
Sbjct: 423 VGIQSNVVTHNSLLKGL 439
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
++ +++FN + G + +N L+ L + G + A +++
Sbjct: 344 VERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ----------------GLILHALQVMN 387
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------- 161
+ +G PD+ TY +++G CK+G ++A ++N+AI +G +V T
Sbjct: 388 EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRL 447
Query: 162 -----IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+QL++R+ E G P TIT+N+V+ LC GK+++ M G P+ +++
Sbjct: 448 KLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYN 507
Query: 216 MLIKKL 221
+LI+
Sbjct: 508 ILIENF 513
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+EA L + N G PD +TY I+DG+CK+ EA ELL +A+ +G + VT L
Sbjct: 275 QEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSL 334
Query: 165 L----------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ + LE+ G P + +N++++ LC G I AL ++ M E G
Sbjct: 335 INGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGC 394
Query: 208 IPSRTSHDMLIKKL 221
P +++++I L
Sbjct: 395 HPDIQTYNIVINGL 408
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+Q T + G VE A E+ + G+KPD+ Y +++ G C G A++++
Sbjct: 327 DQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVM 386
Query: 147 NEAIERGV-----TQNVV------------TLIQLLQRLEMGHIPRTITFNNVIQALCGV 189
NE E G T N+V + + + G++P TFN +I C
Sbjct: 387 NEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKR 446
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
K+ AL L+ M+E+G P +++ ++ L
Sbjct: 447 LKLDSALQLVERMWEYGIAPDTITYNSVLNGL 478
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 20/207 (9%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERID---IFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
L E R +A R VD ++A + + + + + K + +M L +
Sbjct: 234 LCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDD 293
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T + + V+EA E+L + G PD TY ++++G C G A+EL NE
Sbjct: 294 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 353
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
A +G+ ++V L++ L E G P T+N VI LC +G
Sbjct: 354 AQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGN 413
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
I A +++ G +P + + LI
Sbjct: 414 ISDATVVMNDAIMKGYLPDVFTFNTLI 440
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 80/198 (40%), Gaps = 36/198 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-------------- 102
+ + N + ++G + + +N ++ L + A ++ +M G
Sbjct: 383 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 442
Query: 103 -----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+++ A +++ + G+ PD TY ++++G CK G+ NE E E I +G N
Sbjct: 443 YCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPN 502
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+T L++ + G P ++FN +I C G + A LL
Sbjct: 503 PITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQ 562
Query: 201 LMYEHGKIPSRTSHDMLI 218
+ E G + + + LI
Sbjct: 563 KLEEKGYSATADTFNTLI 580
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
+ N + K G V++ N+ +++ + + N ++EEA ++++ +
Sbjct: 474 VLNGLCKAG---KVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS 530
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------- 165
+GL PD ++ ++ GFC+ G A L + E+G + T L+
Sbjct: 531 QEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH 590
Query: 166 -------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L GH + T+ +I C + +A + L M + G IPS ++ +I
Sbjct: 591 MAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVI 650
Query: 219 KKL 221
L
Sbjct: 651 NSL 653
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 29/186 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L++ +D F + + +N ++ ALV D A K + L G
Sbjct: 65 RAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAG------ 118
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI------ 162
+ PD++T+T + FC R + A+ LL RG +
Sbjct: 119 ----------VSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHG 168
Query: 163 ------QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
QL ++ H+ P FN V+ ALC G + +A LLL + + G + +++
Sbjct: 169 HTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYN 228
Query: 216 MLIKKL 221
+ I+ L
Sbjct: 229 IWIRGL 234
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +A ++ + + + P++ + ++ CK G EA LL + I+RG++ N+ T
Sbjct: 168 GHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTY 227
Query: 162 ----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++L+ + +P +T+N +I+ LC +A+ L M
Sbjct: 228 NIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQ 287
Query: 206 GKIPSRTSHDMLI 218
G +P +++ +I
Sbjct: 288 GCLPDDFTYNTII 300
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 34/151 (22%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F +++ G + + FN L+ A FS L + E+ ++ +++ G
Sbjct: 560 LFQKLEEKGYSATADTFNTLIGA-------------FSGKLNMHMAEKIFDEMLS---KG 603
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
+ D YTY ++DG CK + A L E I++G IP T
Sbjct: 604 HRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGF------------------IPSMST 645
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
F VI +L ++ +A+ ++ +M + G +P
Sbjct: 646 FGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 676
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V+ A E+ + +PDV+TY +MDG CK R +EA+ LL+E G + VT
Sbjct: 185 LGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVT 244
Query: 161 LIQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L G +P +T+N +I LC GK+ KA+ LL M
Sbjct: 245 FNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMV 304
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+P+ ++ LI L +Q
Sbjct: 305 ASKCVPNDVTYGTLINGLVKQ 325
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ EEA + + G +P++ Y+A++DG C+ G+ +EA E+L E + +G T N T
Sbjct: 362 KSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYS 421
Query: 163 QLLQRL--------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L++ EM +P I ++ +I LC GK+ +A+++ M
Sbjct: 422 SLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGR 481
Query: 206 GKIPSRTSHDMLIKKL 221
G P ++ +I L
Sbjct: 482 GLRPDVVAYSSMIHGL 497
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA E+L + N G P+ +TY++++ GF K G S +A+ + E + N +
Sbjct: 396 GKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICY 455
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLL--FLM 202
L+ L E G + P + ++++I LC G + L L L
Sbjct: 456 SVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLC 515
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
E P ++++L++ L +Q
Sbjct: 516 QESDSQPDVVTYNILLRALCKQ 537
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA M ++ GL+PDV Y++++ G C G ++L NE + +
Sbjct: 466 GKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQ--------- 516
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
E P +T+N +++ALC I A+ LL M + G P + ++ + L
Sbjct: 517 -------ESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNAL 569
Query: 222 DQQ 224
++
Sbjct: 570 REK 572
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 18/136 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R E YE + K + + P+V ++ ++ CK+G + A+E+ E + +V T
Sbjct: 153 RALEFYECGVGGKTN-ISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYC 211
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L EM G P ++TFN +I LC G + + L+ M+
Sbjct: 212 TLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLK 271
Query: 206 GKIPSRTSHDMLIKKL 221
G +P+ +++ +I L
Sbjct: 272 GCVPNEVTYNTIINGL 287
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---V 158
G++++A +L + P+ TY +++G K GRS + + LL+ ERG N
Sbjct: 291 GKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAY 350
Query: 159 VTLIQLL--------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI L + +E G P + ++ +I LC GK+ +A +L M
Sbjct: 351 STLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVN 410
Query: 205 HGKIPSRTSHDMLIK 219
G P+ ++ LIK
Sbjct: 411 KGCTPNAFTYSSLIK 425
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 36/190 (18%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSN--------------HLMVG-----RVEEAYEML 111
+V FN ++ A+ L D A++ F LM G R++EA +L
Sbjct: 171 NVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLL 230
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL---------- 161
++ +G P T+ +++G CK G +L++ +G N VT
Sbjct: 231 DEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLK 290
Query: 162 ------IQLLQRLEMGH-IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+ LL R+ +P +T+ +I L G+ + LL + E G + ++
Sbjct: 291 GKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAY 350
Query: 215 DMLIKKLDQQ 224
LI L ++
Sbjct: 351 STLISGLFKE 360
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 26/211 (12%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
R A D++K + L I+ +I G + + L + + E+ A+ ++
Sbjct: 245 RDDSAISLFDEMKENGLHPTAKIYTTIL--GIYFKLGRVEKALGLVQEMKEKGCALTVYT 302
Query: 97 NHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
++ G+VEEAY + MN+ +G KPDV +++ K GR +A++L E
Sbjct: 303 YTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEME 362
Query: 151 ERGVTQNVVTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKI 192
T NVVT +++ L E G +P + T++ +I C ++
Sbjct: 363 SLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRV 422
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
KALLLL M E G P ++ LI L +
Sbjct: 423 EKALLLLEEMDEKGFAPCPAAYCSLINALGK 453
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 37/181 (20%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSN-------------------HLMVGRVEEAYEMLMNVK 115
++ L+ A L D+A+ F + +GRVE+A ++ +K
Sbjct: 233 YSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMK 292
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-------------- 161
G VYTYT ++ G K G+ EA + ++ G +VV +
Sbjct: 293 EKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLA 352
Query: 162 --IQLLQRLE-MGHIPRTITFNNVIQALC-GVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
I+L + +E + P +T+N VI+AL + +A L M E+G +PS ++ +L
Sbjct: 353 DAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSIL 412
Query: 218 I 218
I
Sbjct: 413 I 413
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 29/198 (14%)
Query: 6 ANSPTPFSVLL--VDSPSRSPSAAESL-DLKENPRSLQAQRFVDKIK----ASPLKERID 58
A P + L+ + R +A E +L+EN A+ + IK L E +D
Sbjct: 438 APCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVD 497
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------SNHLMV----- 101
+FN +KK G N V +N L+ +V + D A ++H ++
Sbjct: 498 LFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFA 557
Query: 102 --GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G + A EM +KN +KPDV +Y ++ + G EA +L+ E +G +++
Sbjct: 558 RTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLI 617
Query: 160 TLIQLLQ---RLEMGHIP 174
T +L+ +++ H P
Sbjct: 618 TYSSILEAVGKIDEDHTP 635
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT----- 155
GR+ EA ++ +K G PDVY Y A+M G +VG ++EA LL E G T
Sbjct: 489 CGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNS 548
Query: 156 QNVV-----------TLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
N++ I++ R++ I P +++N V+ L G +A L+ M
Sbjct: 549 HNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMN 608
Query: 204 EHG 206
G
Sbjct: 609 SKG 611
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 29/185 (15%)
Query: 31 DLKENPRSLQAQRFVDKIK----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
++KE +L + + IK A ++E IF ++ K+G V N+L+ L
Sbjct: 290 EMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAG 349
Query: 87 EQDTAVKFFSNHLMV--------------------GRVEEAYEMLMNVKNDGLKPDVYTY 126
A+K F + R EA+ +K +G+ P +TY
Sbjct: 350 RLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTY 409
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186
+ ++DGFCK R +A+ LL E E+G L+ L G R N + Q L
Sbjct: 410 SILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINAL--GKAKRYEAANELFQEL 467
Query: 187 ---CG 188
CG
Sbjct: 468 RENCG 472
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 42/206 (20%)
Query: 22 RSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA 81
RS DL E + L + V+K + IF IK + + +N +++
Sbjct: 152 RSTCVIGPADLSEIVKVLGKAKMVNKA--------LSIFYQIKGRKCKPTSNTYNSMILM 203
Query: 82 LVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSN 140
L + G E+ +E+ + N+G PD TY+A++ F K+GR +
Sbjct: 204 L----------------MQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDD 247
Query: 141 EAMELLNEAIERGV--TQNVVTLI--------------QLLQRL-EMGHIPRTITFNNVI 183
A+ L +E E G+ T + T I L+Q + E G T+ +I
Sbjct: 248 SAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELI 307
Query: 184 QALCGVGKIHKALLLLFLMYEHGKIP 209
+ + GK+ +A + M + G P
Sbjct: 308 KGVGKAGKVEEAYSIFMNMLKEGCKP 333
>gi|356518708|ref|XP_003528020.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g79540-like [Glycine max]
Length = 535
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA +ML + GL PDV Y I+ G C VG ++A L E E NV T
Sbjct: 36 GRVGEAGKMLGEMTQRGLVPDVVCYNEIIKGLCNVGLLDQARSLQLEISEHRXFHNVCTH 95
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++G P +TFN ++ LC GK+ +A LLL+ M E
Sbjct: 96 TILICDLYKRGMVEKAQXIFNKLEKLGCFPSAVTFNALMHGLCKAGKLEEAHLLLYKM-E 154
Query: 205 HGKIPS 210
G+ PS
Sbjct: 155 IGRSPS 160
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ +AY++L V G+ PD+ TY +++GFCK N A++ + +G +
Sbjct: 189 GQLVDAYKLLTQVACSGVMPDIVTYNVLINGFCKAANINGALKFFKDMQNKGFS------ 242
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P ++T+ +I L +G+ A + M +HG PS + L+ L
Sbjct: 243 ------------PNSVTYGTLIDGLFRIGREEDAFKIREHMLKHGCEPSFEVYRALMTWL 290
Query: 222 DQQ 224
++
Sbjct: 291 CRK 293
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 18/106 (16%)
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
++ ++PDV YT ++ G + GR EA ++L E +RG+ +P
Sbjct: 15 SESIEPDVVLYTILIRGLSREGRVGEAGKMLGEMTQRGL------------------VPD 56
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +N +I+ LC VG + +A L + EH + +H +LI L
Sbjct: 57 VVCYNEIIKGLCNVGLLDQARSLQLEISEHRXFHNVCTHTILICDL 102
>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 674
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+L +G V +A L V GL PDV T+T+++DG C + ++A +E E GV
Sbjct: 469 GYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRP 528
Query: 157 NVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLL 199
NV T I+LL +++M G P +FN I + C + KI KA L
Sbjct: 529 NVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLF 588
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M +G P +++ LIK L
Sbjct: 589 NDMSRYGVSPDSYTYNALIKAL 610
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ AY + DG +PD +TY ++ G C+ G +EA+ L+ + G+ NVV
Sbjct: 194 GAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVV-- 251
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ ++ C ++ +A+ +L M E G + ++ L+
Sbjct: 252 ----------------TYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLV 292
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 36/194 (18%)
Query: 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV 104
V +++S L E +D F IKK G N + ++ + + + A K+FS +
Sbjct: 366 VKVLESSDLCELVDDF--IKKGG-NLGFDMYIMIIKSFLRCKDISKANKYFSQMV----- 417
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+DGL V +Y ++D F K G A+E + E G + N+VT L
Sbjct: 418 -----------SDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTL 466
Query: 165 LQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ +E G +P ITF ++I LC ++ A M E G
Sbjct: 467 INGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGV 526
Query: 208 IPSRTSHDMLIKKL 221
P+ ++++LI L
Sbjct: 527 RPNVQTYNVLIHGL 540
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 34/150 (22%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L + + F+ + + G +V +N L+ L G V +A E+L
Sbjct: 511 LDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCS----------------AGHVSKAIELLN 554
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+K DG+ PD Y++ A + FC++ + +A +L N+ GV+
Sbjct: 555 KMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVS----------------- 597
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLM 202
P + T+N +I+ALC ++ +A ++ M
Sbjct: 598 -PDSYTYNALIKALCDERRVDEAKEIILAM 626
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A + + I++ N +K DG FN +++ + ++E+A +
Sbjct: 543 AGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMR----------------KIEKAQK 586
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+ ++ G+ PD YTY A++ C R +EA E++
Sbjct: 587 LFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEII 623
>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
Length = 465
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 22/143 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR +EA ++ + G +PDV TY+++++G CK G+ EA+E + E G N VT
Sbjct: 306 LGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVT 365
Query: 161 LIQLLQRL-EMGHI---------------------PRTITFNNVIQALCGVGKIHKALLL 198
L+ L G + P T+N +I LC G+I AL
Sbjct: 366 YCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKF 425
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
M G P S+ +++ L
Sbjct: 426 FQRMRSQGCDPDGVSYSTIVEGL 448
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S + G+VEE+ E+L V + GL+PD YT ++ CK R EA+ELL E
Sbjct: 84 TYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEM 143
Query: 150 IERGVTQNVVTLIQLL------QRLEM-----------GHIPRTITFNNVIQALCGVGKI 192
I G ++T L+ + LEM G +T+N ++ LC G++
Sbjct: 144 IRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRL 203
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A LL M G P ++ + L
Sbjct: 204 QEAEQLLERMKASGCAPDVVAYSSFVYGL 232
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-----RVEEAYEMLMN 113
+ N K G D LL + + Q V + N L+ G R EA E++ +
Sbjct: 16 LVNGFSKQGRP---GDCERLLETMAARDIQPNVVSY--NGLLEGLCKLERWHEAEELVRD 70
Query: 114 VKNDGLK--PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--- 168
+ + G + PD+ TY+ ++ G+CK G+ E+ ELL E I RG+ + + +++ L
Sbjct: 71 MISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKS 130
Query: 169 --------------EMGHIPRTITFNNVIQALC 187
G P ITFN +I C
Sbjct: 131 ARLGEALELLEEMIRAGCCPTLITFNTLISGCC 163
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++EA ++L +K G PDV Y++ + G CK G+ +A ++L
Sbjct: 200 AGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLE------------- 246
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
Q + H P +T+N ++ LC GKI AL ++ M
Sbjct: 247 -----QMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQM 283
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQRLEMGH-- 172
G P+ T+ A+++GF K GR + LL R + NVV+ L++ L +LE H
Sbjct: 5 GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEA 64
Query: 173 --------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
P +T++ ++ C GK+ ++ LL + G P
Sbjct: 65 EELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRP 115
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 16/78 (20%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
SVS +N L+ L D A+KFF +++ G PD +Y+ I+
Sbjct: 402 SVSTYNALIGGLCKAGRIDDALKFFQR----------------MRSQGCDPDGVSYSTIV 445
Query: 131 DGFCKVGRSNEAMELLNE 148
+G + GR+ +A +L+E
Sbjct: 446 EGLARSGRALQAEMILSE 463
>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 683
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+L +G V +A L V GL PDV T+T+++DG C + ++A +E E GV
Sbjct: 469 GYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRP 528
Query: 157 NVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLL 199
NV T I+LL +++M G P +FN I + C + KI KA L
Sbjct: 529 NVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLF 588
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M +G P +++ LIK L
Sbjct: 589 NDMSRYGVSPDSYTYNALIKAL 610
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ AY + DG +PD +TY ++ G C+ G +EA+ L+ + G+ NVV
Sbjct: 194 GAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVV-- 251
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ ++ C ++ +A+ +L M E G + ++ L+
Sbjct: 252 ----------------TYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLV 292
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 36/194 (18%)
Query: 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV 104
V +++S L E +D F IKK G N + ++ + + + A K+FS +
Sbjct: 366 VKVLESSDLCELVDDF--IKKGG-NLGFDMYIMIIKSFLRCKDISKANKYFSQMV----- 417
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+DGL V +Y ++D F K G A+E + E G + N+VT L
Sbjct: 418 -----------SDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTL 466
Query: 165 LQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ +E G +P ITF ++I LC ++ A M E G
Sbjct: 467 INGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGV 526
Query: 208 IPSRTSHDMLIKKL 221
P+ ++++LI L
Sbjct: 527 RPNVQTYNVLIHGL 540
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 34/150 (22%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L + + F+ + + G +V +N L+ L G V +A E+L
Sbjct: 511 LDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCS----------------AGHVSKAIELLN 554
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+K DG+ PD Y++ A + FC++ + +A +L N+ GV+
Sbjct: 555 KMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVS----------------- 597
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLM 202
P + T+N +I+ALC ++ +A ++ M
Sbjct: 598 -PDSYTYNALIKALCDERRVDEAKEIILAM 626
Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A + + I++ N +K DG FN +++ + ++E+A +
Sbjct: 543 AGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMR----------------KIEKAQK 586
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+ ++ G+ PD YTY A++ C R +EA E++
Sbjct: 587 LFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEII 623
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R +A +L ++++ G++PDV TY ++ G C + A+ELLNE E G+ NVV
Sbjct: 109 RAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYS 168
Query: 163 QLLQ------RLE-MGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL R E +G + P + + +I +LC GK+ KA ++ +M E
Sbjct: 169 CLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTER 228
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P+ ++++LI + ++
Sbjct: 229 GLEPNVVTYNVLINSMCKE 247
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 37/186 (19%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------------ 96
+ + + S++ G V + L+ L + DTAV+ +
Sbjct: 112 QAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLL 171
Query: 97 -NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ GR E ++ + G++PDV YTA++D C+ G+ +A +++ ERG+
Sbjct: 172 HGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLE 231
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
NVV T+N +I ++C G + +AL L M E G P +++
Sbjct: 232 PNVV------------------TYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYN 273
Query: 216 MLIKKL 221
LI L
Sbjct: 274 TLITGL 279
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 16/120 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA ++ N+ G++PDV TY ++ G V +EAM LL E +
Sbjct: 248 GSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEE------------M 295
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+Q R+ P +TFN+VI LC +G + +AL + +M E+G + + ++LI L
Sbjct: 296 MQGETRVR----PDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGL 351
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 32/171 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K ++E +D+ ++ + G V +N L+ L + E D A+ +M G
Sbjct: 245 CKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALL-EEMMQGETR-- 301
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++PD+ T+ +++ G CK+G +A+++ E G N+V
Sbjct: 302 -----------VRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLV-------- 342
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
FN +I L V K+ KA+ L+ M G P ++ +LI
Sbjct: 343 ----------AFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILI 383
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 84 MLNEQDTAVKFFSNHLMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
M+ E + +L++G +V++A E++ + + GL+PD +TY+ +++GFCK+
Sbjct: 331 MMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMR 390
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ A L+E +G+ V I LL+ +
Sbjct: 391 QVERAESYLSEMRHQGMEPEPVHYIPLLKAM 421
>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
Length = 481
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 84/187 (44%), Gaps = 37/187 (19%)
Query: 54 KERIDIFNSIKKD----GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
+ ++D+ ++D G +V+ +N L+ AL M GR +AY
Sbjct: 232 RGKLDVALQYREDMVQRGVAMTVATYNLLVHAL----------------FMDGRASDAYA 275
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ--- 166
+L ++ +GL PDV+TY +++G+CK G +A+E+ E +GV VT L+
Sbjct: 276 VLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFS 335
Query: 167 --------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
++ G P + +N +I + C G + +A ++ M + P
Sbjct: 336 RKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDV 395
Query: 213 SHDMLIK 219
+++ LI+
Sbjct: 396 TYNTLIR 402
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 102 GRVEEAYEMLMNVK-NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV+ A E++ ++ G+ PD YTY ++ G+CK+GR +A ++ +E + +G
Sbjct: 161 GRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVA---- 216
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P + +N +I C GK+ AL M + G + ++++L+
Sbjct: 217 -------------PSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHA 263
Query: 221 L 221
L
Sbjct: 264 L 264
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 19/120 (15%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALV---MLNEQD----TAVK------------F 94
K+ +++F + + G + + L+ A + E D AVK
Sbjct: 306 KKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNAL 365
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
++H G +E A+E++ ++ + PD TY ++ GFC +GR +EA L++E +RG+
Sbjct: 366 INSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGI 425
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 18/153 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T S +GR+E+A ++ + G + P Y A++ G+C G+ + A++ +
Sbjct: 185 TYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYRED 244
Query: 149 AIERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGK 191
++RGV V T L+ L M G P T+N +I C G
Sbjct: 245 MVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGN 304
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
KAL + M G + ++ LI ++
Sbjct: 305 EKKALEVFEEMSRKGVRATAVTYTSLIYAFSRK 337
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179
+P+ TY ++ GFC GR A+E++ E ERG G P T+
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERG-----------------GIAPDKYTY 186
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTSHDMLI 218
+I C +G++ A + M G++ PS ++ LI
Sbjct: 187 ATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALI 226
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
++GR++EA ++ + G++PD+ G CK G+ ++A L+ E + +G+T +
Sbjct: 406 LLGRLDEARGLIDEMTKRGIQPDL--------GLCKNGQGDDAENLMKEMVGKGITPDDS 457
Query: 160 TLIQLLQRL 168
T I L++ L
Sbjct: 458 TYISLIEGL 466
>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E +D++N + ++G+ + +N L+ L G++ EA +
Sbjct: 329 LCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSY----------------GKMVEAVSVSQ 372
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------- 161
++ +G+ P+ TY+ ++DGF K G A E+ N+ I G NVV
Sbjct: 373 KMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNS 432
Query: 162 -----IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+ L++ + G+ P TITFN I+ LC GK A+ +L M ++G P+ T+++
Sbjct: 433 MFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYN 492
Query: 216 MLIKKL 221
++ L
Sbjct: 493 EVLDGL 498
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 93/226 (41%), Gaps = 66/226 (29%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNHL 99
I+N++K+DG +V +N LL AL + D A K S+
Sbjct: 165 IYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMC 224
Query: 100 MVGRVEEAYEMLMNVKN------------------------------DGLKPDVYTYTAI 129
+G+VEEA E+ M +K+ +G+ PDV TY+ +
Sbjct: 225 RLGKVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTV 284
Query: 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-----------------GH 172
++ ++G A+ +L + RG + NV T L++ M G
Sbjct: 285 INTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGS 344
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T+ +N +I LC GK+ +A+ + M +G P+ T++ LI
Sbjct: 345 EPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLI 390
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F G+ E A ++L ++ G P+V TY ++DG R+ EA++++ E E
Sbjct: 459 FIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEME 518
Query: 154 VTQNVVTL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKAL 196
+ N+VT +Q+ +L +G P +IT+N VI A C G++ A+
Sbjct: 519 IKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAI 578
Query: 197 LLL 199
L+
Sbjct: 579 QLV 581
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 34/147 (23%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A ++ + F I + G SV +N +L AL+ N+ ++N
Sbjct: 120 RAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNN----------- 168
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+K DG++ +VYTY ++ CK R + A +LL E +G
Sbjct: 169 -----MKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGC-------------- 209
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKA 195
IP +++ V+ ++C +GK+ +A
Sbjct: 210 ----IPDAVSYTTVVSSMCRLGKVEEA 232
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 102 GRVEEAYEML--MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G V+ A +++ + K +G PDV+TYT+++ G C +EA+ L++ I G+ N
Sbjct: 572 GEVKTAIQLVDRLTKKGEGY-PDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRA 630
Query: 160 TLIQLLQRL--EMGHIPRTITFNNVI 183
T L++ L ++GH+ +N++
Sbjct: 631 TWNALVRGLFSKLGHLGPIHIVDNIL 656
>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 418
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A L +E +++G+ N VT L+
Sbjct: 191 FRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + N GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 18/109 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A+E + + ++ D YTA++ G C+ GRS +A ++L E + G+
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLK------ 378
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
P T+ +I C G + LL M G +PS
Sbjct: 379 ------------PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPS 415
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 37/204 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLL------------MALVM-LNEQDTAVKFFSNHLMV-- 101
I +F+ +K++G + + + +L + LV + E+ A+ ++ ++
Sbjct: 250 ISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKG 309
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G+VEEAY + MN+ +G KPDV +++ K GR +A++L E T N
Sbjct: 310 VGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPN 369
Query: 158 VVTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
VVT +++ L E G +P + T++ +I C ++ KALLLL
Sbjct: 370 VVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLL 429
Query: 200 FLMYEHGKIPSRTSHDMLIKKLDQ 223
M E G P ++ LI L +
Sbjct: 430 EEMDEKGFAPCPAAYCSLINALGK 453
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 37/181 (20%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSN-------------------HLMVGRVEEAYEMLMNVK 115
++ L+ A L D+A+ F + +GRVE+A ++ +K
Sbjct: 233 YSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMK 292
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-------------- 161
G VYTYT ++ G K G+ EA + ++ G +VV +
Sbjct: 293 EKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLA 352
Query: 162 --IQLLQRLE-MGHIPRTITFNNVIQALC-GVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
I+L + +E + P +T+N VI+AL + +A L M E+G +PS ++ +L
Sbjct: 353 DAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSIL 412
Query: 218 I 218
I
Sbjct: 413 I 413
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 29/207 (14%)
Query: 6 ANSPTPFSVLL--VDSPSRSPSAAESL-DLKENPRSLQAQRFVDKIK----ASPLKERID 58
A P + L+ + R +A E +L+EN A+ + IK L E +D
Sbjct: 438 APCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVD 497
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------SNHLMV----- 101
+FN +KK G N V +N L+ +V + D A ++H ++
Sbjct: 498 LFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFA 557
Query: 102 --GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G + A EM +KN +KPDV +Y ++ + G EA +L+ E +G +++
Sbjct: 558 RTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLI 617
Query: 160 TLIQLLQ---RLEMGHIPRTITFNNVI 183
T +L+ +++ H P T +++
Sbjct: 618 TYSSILEAVGKIDEDHTPAGQTVMHIV 644
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT----- 155
GR+ EA ++ +K G PDVY Y A+M G +VG ++EA LL E G T
Sbjct: 489 CGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNS 548
Query: 156 QNVV-----------TLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
N++ I++ R++ I P +++N V+ L G +A L+ M
Sbjct: 549 HNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMN 608
Query: 204 EHG 206
G
Sbjct: 609 SKG 611
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 29/185 (15%)
Query: 31 DLKENPRSLQAQRFVDKIK----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
++KE +L + + IK A ++E IF ++ K+G V N+L+ L
Sbjct: 290 EMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAG 349
Query: 87 EQDTAVKFFSNHLMV--------------------GRVEEAYEMLMNVKNDGLKPDVYTY 126
A+K F + R EA+ +K +G+ P +TY
Sbjct: 350 RLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTY 409
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186
+ ++DGFCK R +A+ LL E E+G L+ L G R N + Q L
Sbjct: 410 SILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINAL--GKAKRYEAANELFQEL 467
Query: 187 ---CG 188
CG
Sbjct: 468 RENCG 472
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 34/179 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + + + IF IK + + +N +++ L + G E+ +
Sbjct: 171 KAKMVNKALSIFYQIKGRKCKPTSNTYNSMILML----------------MQEGHHEKVH 214
Query: 109 EMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV--TQNVVTLI--- 162
E+ + N+G PD TY+A++ F K+GR + A+ L +E E G+ T + T I
Sbjct: 215 ELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGI 274
Query: 163 -----------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
L+Q + E G T+ +I+ + GK+ +A + M + G P
Sbjct: 275 YFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKP 333
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA +M + + G KPD++T+ +++ G C+V +A+ L + + GV N VT
Sbjct: 466 GKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTF 525
Query: 162 IQLLQR-LEMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L G I IT+N +I+ALC G + K L L M
Sbjct: 526 NTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIR 585
Query: 205 HGKIPSRTSHDMLI 218
G PS + ++LI
Sbjct: 586 KGLTPSIITCNILI 599
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE+ + + GL P + T +++GFC G+ + A+E + + I RG + ++VT
Sbjct: 571 GAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTY 630
Query: 162 ----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L ++L+ I P +IT+N +I LC G A LL+ E
Sbjct: 631 NSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVE 690
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G +P+ + ++L+ +Q
Sbjct: 691 NGFVPNDVTWNILVYNFGKQ 710
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 88/212 (41%), Gaps = 36/212 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
K + E +D+F + G + FN L+ L ++E + A+ + +
Sbjct: 464 KHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSV 523
Query: 98 --------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
L G ++EA +++ ++ G D TY ++ CK G + + L E
Sbjct: 524 TFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEM 583
Query: 150 IERGVTQNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKI 192
I +G+T +++T L+ + G P +T+N++I LC G+I
Sbjct: 584 IRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRI 643
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+AL L + G P +++ LI L ++
Sbjct: 644 QEALNLFEKLQAEGIQPDSITYNTLICWLCRE 675
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+ EA + + + N+G PDV+T++ +++G CK G A+EL+N+ +G N+ T
Sbjct: 360 GRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNT 419
Query: 161 LIQLL-------QRLEMGHIPR----------TITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ Q E G I R T+ +N +I ALC GKIH+AL + M
Sbjct: 420 YTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMS 479
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P + + LI L
Sbjct: 480 SKGCKPDIFTFNSLIFGL 497
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 33/200 (16%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG--------------- 102
++F + G + + F ++ AL M+NE D A + G
Sbjct: 196 NVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDAL 255
Query: 103 ----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
RV+EA ++L + G PDV T+ ++ GFC++ R E +L++ I +G T N
Sbjct: 256 SKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPND 315
Query: 159 VTLIQLLQ------RLEMGHI-------PRTITFNNVIQALCGVGKIHKALLLLF-LMYE 204
+T L+ R++ P + FN ++ G++++A ++ M
Sbjct: 316 MTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMIN 375
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G +P + L+ L ++
Sbjct: 376 NGYVPDVFTFSTLVNGLCKK 395
>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 772
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA + ++ G+ DV+TY + +G CK+ R +EA +LN +E+GV NVVT
Sbjct: 406 GKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTF 465
Query: 162 IQLL------------QRL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ +RL + G +P IT+N +I A C K+ +A + M
Sbjct: 466 TMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMIN 525
Query: 205 HGKIPSRTSHDMLI 218
G +P ++ LI
Sbjct: 526 KGLLPDLYTYSSLI 539
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 46/66 (69%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A+++ + N GL PD+YTY++++ G C VGR +EA++L NE +G+T+NV T
Sbjct: 512 KVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYT 571
Query: 163 QLLQRL 168
++ L
Sbjct: 572 SMISGL 577
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 37/181 (20%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTA-------------------VKFFSNHLMVGR 103
++K G N V +N L L L+ D A F + G
Sbjct: 418 MEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGN 477
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA + +++ G P++ TY ++D +CK + +A ++ +E I +G+
Sbjct: 478 LAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGL--------- 528
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+P T++++I C VG++ +AL L M G + ++ +I L +
Sbjct: 529 ---------LPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSK 579
Query: 224 Q 224
+
Sbjct: 580 E 580
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV- 159
+G ++ A+ + + + P+ +TY A++ G CK G+ A LL E +GV N+V
Sbjct: 335 LGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVI 394
Query: 160 ---TLIQLLQRLEMGHIPR-------------TITFNNVIQALCGVGKIHKALLLLFLMY 203
T+ +R +M R T+N + LC + + +A +L M
Sbjct: 395 FNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMV 454
Query: 204 EHGKIPSRTSHDMLIK 219
E G P+ + M I+
Sbjct: 455 EKGVKPNVVTFTMFIE 470
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA ++ ++ ++ DVY Y++++ ++G A L +E +R + N T
Sbjct: 301 GDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTY 360
Query: 162 -----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I LL+ G + FN + C GK+ +AL L +M +
Sbjct: 361 GALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEK 420
Query: 205 HG 206
G
Sbjct: 421 KG 422
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKI-----KASPLKERIDIFNSIKKDGTN 69
L+ DS P ++ +DL + S ++F D + E I +++ +++ G
Sbjct: 119 LVTDSDIECPVSS-IVDLVDEFESHFVEKFCDMLFRVCSDNRLFDETIRVYDYVEEKGLV 177
Query: 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAI 129
LL+AL E D V+FF H MV +++ + V + T +
Sbjct: 178 IEERSCFVLLLALKRCGEVDFCVRFF--HRMV-------------ESNKFEIRVQSLTLV 222
Query: 130 MDGFCKVGRSNEAMELLNEAIERGVTQ-NVVTLIQLL 165
+D C+ G +A EL++E + +G+ + NV T LL
Sbjct: 223 IDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLL 259
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA ++L + GL PD+YTY AI+ G CK G A EL+ +G +V++
Sbjct: 231 GGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISY 290
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+ EM G P +T++ +I +LC G+I +A+ +L +M E
Sbjct: 291 NILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIE 350
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P S+D LI L ++
Sbjct: 351 KELTPDTYSYDPLISALCKE 370
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----L 161
E +M + +PDV+ Y A++ GFCKV + A ++LN RG ++VT +
Sbjct: 130 EKASRVMEILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMI 189
Query: 162 IQLLQRLEMG-------------HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
L R ++G +P IT+ +I+A G I++A+ LL M G +
Sbjct: 190 GSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLL 249
Query: 209 PSRTSHDMLIKKLDQQ 224
P +++ +I+ + ++
Sbjct: 250 PDMYTYNAIIRGMCKE 265
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 19/131 (14%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV--------------KFFSNHLM 100
+ ++IFN ++ G +VS +N ++ AL ++ A+ + N L+
Sbjct: 410 QALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLI 469
Query: 101 V-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G VEEA +L +++ G +P V +Y ++ G CKV R ++A+ + E IE+G
Sbjct: 470 SCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCR 529
Query: 156 QNVVTLIQLLQ 166
N T I L++
Sbjct: 530 PNETTYILLIE 540
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ A ++ + ++G PD+ Y I+ CK G +N+A+E+ N+ G NV +
Sbjct: 371 GRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSY 430
Query: 162 IQLLQRL--------EMGHIPRTI---------TFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L +G +P I T+N++I LC G + +A+ LL M +
Sbjct: 431 NTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQ 490
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ S+++++ L
Sbjct: 491 SGFRPTVISYNIVLLGL 507
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA +L + L PD Y+Y ++ CK GR + A+ +++ I G ++V
Sbjct: 336 GRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNY 395
Query: 162 IQLL----------QRLE-------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L Q LE MG P ++N +I AL G +AL ++ M
Sbjct: 396 NTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMIS 455
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ LI L
Sbjct: 456 KGIDPDEITYNSLISCL 472
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 23/149 (15%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------- 148
S V ++E A ++L +K G PD+ TY ++ C + A+ +L++
Sbjct: 155 SGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCM 214
Query: 149 -------------AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
+E G+ + + L ++L R G +P T+N +I+ +C G + +A
Sbjct: 215 PTVITYTILIEATIVEGGINEAMKLLEEMLAR---GLLPDMYTYNAIIRGMCKEGMVERA 271
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L+ + G P S+++L++ Q
Sbjct: 272 AELITSLTSKGCEPDVISYNILLRAFLNQ 300
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR----------------LEMGHIPRTI 177
CK G+ NE++ L + +G T +V+ +L++ LE P
Sbjct: 89 CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVF 148
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N VI C V +I A +L M G +P +++++I L
Sbjct: 149 AYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSL 192
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
++E I + + +++ G +V +N +L+ L + D A+ F+ EM+
Sbjct: 478 VEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFA------------EMI- 524
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
G +P+ TY +++G G EAMEL N R V
Sbjct: 525 ---EKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDV 563
>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 36/212 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV--------------MLNEQDTAVKF 94
K + E +F+++ DG + +N L+ AL+ ML T K
Sbjct: 507 KVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKI 566
Query: 95 FSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ VG +E+ E+ + DGL D + +++G CKVG+ + A E L +A
Sbjct: 567 TYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDA 626
Query: 150 IERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
I RG ++VT + L RL++ G P T+N I C G +
Sbjct: 627 INRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMV 686
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A + E+G +PS + ++L+ L +Q
Sbjct: 687 NDACSFFYRGIENGFVPSNLTWNVLVYTLLKQ 718
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 96 SNHLMVGRVEEAYEML-MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ ++M G+++EA L + N G +PD++TY +M G CK G + A +L+NE RG
Sbjct: 362 NGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGC 421
Query: 155 TQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALL 197
NV+T L+ L EM G ++ +N +I ALC K+H AL
Sbjct: 422 EPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALN 481
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
LL M G P +++ LI L
Sbjct: 482 LLSEMCTKGCKPDLFTYNSLIYGL 505
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
+V A +L + G KPD++TY +++ G CKV R +EA L + + G N V
Sbjct: 475 KVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYN 534
Query: 160 TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
TLI L R L G IT+N +I+A C VG I K L L M
Sbjct: 535 TLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMD 594
Query: 206 GKIPSRTSHDMLIKKL 221
G S +++I L
Sbjct: 595 GLGADTISCNIMINGL 610
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQL 164
Y+ML + G+ P V+T+ +M C + A LL + + G N + TLI
Sbjct: 207 YDML----SKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHA 262
Query: 165 LQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L + MG +P TFN+VI LC V KIH A L+ M G P
Sbjct: 263 LSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPD 322
Query: 211 RTSHDMLIKKL 221
++ L+ L
Sbjct: 323 NMTYGFLLHGL 333
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 37/157 (23%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG--------------- 102
++F + G + +V F ++ AL M NE D+A + G
Sbjct: 204 NVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHAL 263
Query: 103 ----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+V EA ++L + G PDV T+ ++ G CKV + ++A +L++ + R
Sbjct: 264 SQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLR------ 317
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
G P +T+ ++ LC +GK+++A
Sbjct: 318 ------------GFYPDNMTYGFLLHGLCRIGKLNEA 342
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 31/201 (15%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P S+ Q + + + + + E + + + G V FND++ L +N+ A K
Sbjct: 251 PNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKL 310
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL------NE 148
L+ G PD TY ++ G C++G+ NEA ++L N
Sbjct: 311 VDRMLL----------------RGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNN 354
Query: 149 AIERGVTQNVVTLIQLLQR--------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
AI + V QL + + G P T+N ++ LC G + A L+
Sbjct: 355 AILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVN 414
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G P+ ++ +L+ L
Sbjct: 415 EMSRRGCEPNVITYAILVNGL 435
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL-------------- 146
+G+ + ++LM +K +G+ + IM + K G+ +A+ LL
Sbjct: 125 IGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFK 184
Query: 147 --NEAIERGVTQNV--VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ +E VT N V L G P TF V++ALC ++ A LL M
Sbjct: 185 SYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDM 244
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+HG +P+ + LI L Q+
Sbjct: 245 TKHGCVPNSIVYQTLIHALSQK 266
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA +L + GL + Y ++ C+ + + A+ LL+E +G
Sbjct: 439 GLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCK------ 492
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+N++I LC V +I +A L M G + + +++ LI L
Sbjct: 493 ------------PDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHAL 540
>gi|15225790|ref|NP_180247.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100043|sp|O81028.1|PP171_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g26790, mitochondrial; Flags: Precursor
gi|3426046|gb|AAC32245.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330252793|gb|AEC07887.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 799
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 67/112 (59%), Gaps = 17/112 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GRVEEA+E+L +K+ G+ PDV YT ++DG+C G+ +A++L++E I G++ +++T
Sbjct: 401 LGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLIT 460
Query: 161 ----------------LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKA 195
++++ +R++ G P +T + +I+ LC K+ +A
Sbjct: 461 YNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEA 512
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
EA E ++ + D Y D K+GR EA ELL E +RG+
Sbjct: 371 EALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGI----------- 419
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P I + +I C GK+ AL L+ M +G P ++++L+ L
Sbjct: 420 -------VPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGL 468
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 20/144 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V+ F N + +++ A +++ ++ G DVY A++D +CK EA+ L++ +
Sbjct: 290 VRGFCNEM---KMKAAESVIIEMEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLG 346
Query: 152 RGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHK 194
+G+ N V + +LQ +M + +N AL +G++ +
Sbjct: 347 KGLKVNCVIVSLILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEE 406
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A LL M + G +P ++ LI
Sbjct: 407 AFELLQEMKDRGIVPDVINYTTLI 430
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EA + + GL PD++TYT ++ +C++ +A L + +RG+ +VVT
Sbjct: 607 VREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTV 666
Query: 164 LLQR 167
LL R
Sbjct: 667 LLDR 670
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+K F + + G +E+A+++L + ++P ++ FCK+ EA L + +E
Sbjct: 560 IKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVE 619
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
RG+ IP T+ +I C + ++ KA L M + G P
Sbjct: 620 RGL------------------IPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDV 661
Query: 212 TSHDMLIKK 220
++ +L+ +
Sbjct: 662 VTYTVLLDR 670
>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Cucumis
sativus]
Length = 830
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA +ML ++ GL P V TYT +M+ +C+VG E L+E V VT
Sbjct: 565 GDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTY 624
Query: 162 IQL-------------LQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L LQ LE G +P ++T+N +IQ C +I KAL L +M
Sbjct: 625 TVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLL 684
Query: 205 HGKIPSRTSHDMLIKKL 221
H P++ ++ +LI L
Sbjct: 685 HNCDPTQVTYKVLINAL 701
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G + EA L DV Y ++DG+ ++ EAM+L + IERG+T +VVT
Sbjct: 495 GNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTF 554
Query: 161 ------------LIQLLQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ + LE+ G +P +T+ ++ A C VG + + L M
Sbjct: 555 NTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEA 614
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+ +P+ ++ +LIK L +Q
Sbjct: 615 NAVVPTHVTYTVLIKGLCRQ 634
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 34/150 (22%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A + E + + ++K G V +N L ++L LM G + +
Sbjct: 319 AGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLG------------LMSGARKVVQK 366
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
ML+ GL PD+ TYT ++ G C++G EA++L E + RG NV
Sbjct: 367 MLLQ----GLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNV----------- 411
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLL 199
I +N ++ LC VG+I +AL L
Sbjct: 412 -------IFYNMLLSCLCKVGRIEEALTLF 434
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 35/176 (19%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------------SNHL 99
D++N IK G S + L+ L ++ + A+ F S
Sbjct: 223 DVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHDSNKVVGPSIVSINTIMSKFC 282
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
VG ++ A + +GL D ++Y ++ G C G +EA+ ++ + GV +VV
Sbjct: 283 KVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVV 342
Query: 160 T---------LIQLL--------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
T L+ L+ + L G P +T+ +I C +G I +AL L
Sbjct: 343 TYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKL 398
>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g13630-like [Cucumis sativus]
Length = 830
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA +ML ++ GL P V TYT +M+ +C+VG E L+E V VT
Sbjct: 565 GDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTY 624
Query: 162 IQL-------------LQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L LQ LE G +P ++T+N +IQ C +I KAL L +M
Sbjct: 625 TVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLL 684
Query: 205 HGKIPSRTSHDMLIKKL 221
H P++ ++ +LI L
Sbjct: 685 HNCDPTQVTYKVLINAL 701
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G + EA L DV Y ++DG+ ++ EAM+L + IERG+T +VVT
Sbjct: 495 GNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTF 554
Query: 161 ------------LIQLLQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ + LE+ G +P +T+ ++ A C VG + + L M
Sbjct: 555 NTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEA 614
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+ +P+ ++ +LIK L +Q
Sbjct: 615 NAVVPTHVTYTVLIKGLCRQ 634
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 34/150 (22%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A + E + + ++K G V +N L ++L LM G + +
Sbjct: 319 AGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLG------------LMSGARKVVQK 366
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
ML+ GL PD+ TYT ++ G C++G EA++L E + RG NV
Sbjct: 367 MLLQ----GLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNV----------- 411
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLL 199
I +N ++ LC VG+I +AL L
Sbjct: 412 -------IFYNMLLSCLCKVGRIEEALTLF 434
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 35/176 (19%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------------SNHL 99
D++N IK G S + L+ L ++ + A+ F S
Sbjct: 223 DVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHDSNKVVGPSIVSINTIMSKFC 282
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
VG ++ A + +GL D ++Y ++ G C G +EA+ ++ + GV +VV
Sbjct: 283 KVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVV 342
Query: 160 T---------LIQLL--------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
T L+ L+ + L G P +T+ +I C +G I +AL L
Sbjct: 343 TYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKL 398
Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++ E+ ++L + GL PD TY I+ FCK +A++L N + VT
Sbjct: 636 KMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYK 695
Query: 163 QLLQRL----EMGHIPRTI-------------TFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L ++ + R + T+ +I+A C G++ KAL M
Sbjct: 696 VLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAK 755
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G + S + +I +L ++
Sbjct: 756 GFVISIRDYSAVINRLCKR 774
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 17/110 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV++A+ + +K G+ PDVYTYT ++D FCK G +A +E G + NVVT
Sbjct: 467 RVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYT 526
Query: 163 ----------QLLQRLEMGH-------IPRTITFNNVIQALCGVGKIHKA 195
QL Q ++ H P IT++ +I LC G+I KA
Sbjct: 527 ALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKA 576
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 21/155 (13%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128
VSD +DLL A++ + + + VG ++ A E+ + + G P V+TYT+
Sbjct: 624 VSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTS 683
Query: 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188
++D K GR + AM++L++ ++ NVV T+ ++ LC
Sbjct: 684 LIDRMFKDGRLDLAMKVLSQMLKDSCNPNVV------------------TYTAMVDGLCK 725
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
G+ KAL LL LM + G P+ ++ LI L +
Sbjct: 726 TGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGK 760
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ A ++L + D P+V TYTA++DG CK G + +A+ LL+ ++G + NVV
Sbjct: 692 GRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVV-- 749
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ +I L GK+ L L M G P+ ++ +LI
Sbjct: 750 ----------------TYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILI 790
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 18/171 (10%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA +++ F+ ++ G + +V + LL A + + A F H MVG
Sbjct: 498 CKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIF--HRMVG----- 550
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
D P+ TY+A++DG CK G +A E+ + I G + N+ + +
Sbjct: 551 ---------DACYPNAITYSALIDGLCKAGEIQKACEVYAKLI--GTSDNIESDFYFEGK 599
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +T+ ++ LC K+ A LL M G P++ +D L+
Sbjct: 600 DTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALV 650
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K+ L + DIF+ + D + ++ L+ L E A + ++ + E+
Sbjct: 533 LKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIES 592
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
D + P+V TY A+++G CK + ++A +LL+ + G
Sbjct: 593 DFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCE------------ 640
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P I ++ ++ C VG+I A + M + G +PS ++ LI ++
Sbjct: 641 ------PNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRM 688
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 21/208 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIF----NSIKKDGTNWSVSDFNDLLMALVMLNE 87
L +N R +A+ F D + +K + I+ + G + F DL++ +
Sbjct: 276 LCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPN 335
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+ F + +EEA + ++ GL PDV ++ A++D CK+GR ++A+ N
Sbjct: 336 RRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFN 395
Query: 148 EAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVG 190
+ I GVT N+ L+ + L+ G + FN ++ LC G
Sbjct: 396 QMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEG 455
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ +A L+ LM G P+ S++ L+
Sbjct: 456 RVMEAQRLIDLMIRVGVRPNVISYNTLV 483
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQ 156
G+VE+AY + + + + G+ P+V TYT ++DG CK + A + + I+RGV T
Sbjct: 175 GQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTY 234
Query: 157 NVVT-----------LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
N + ++Q+L+ + G P IT+ ++ LC G+ +A L M+
Sbjct: 235 NCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFR 294
Query: 205 HGKIPSRTSHDMLI 218
G P + +L+
Sbjct: 295 KGIKPDVAIYAILL 308
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 23/121 (19%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H + GR++EA ++L + ++GLKP+ +TYT ++ G+CK R ++A L E + +GVT
Sbjct: 484 AGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVT 543
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
P T+N ++ L G+ +A L M I SRT D
Sbjct: 544 ------------------PVVATYNTILHGLFQTGRFSEANELYLNM-----INSRTKCD 580
Query: 216 M 216
+
Sbjct: 581 I 581
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 18/137 (13%)
Query: 103 RVEEAYE-MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
RV+EA + +L+ + G PDV Y +++GF + G+ +A L E +++G+ NVVT
Sbjct: 140 RVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTY 199
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ Q ++ G P T+N +I GK + + +L M
Sbjct: 200 TTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMST 259
Query: 205 HGKIPSRTSHDMLIKKL 221
HG P ++ +L+ L
Sbjct: 260 HGLEPDCITYALLLDYL 276
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 34/176 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + + +F + G V+ +N +L L GR EA
Sbjct: 523 KARRVDDAYSLFREMLMKGVTPVVATYNTILHGL----------------FQTGRFSEAN 566
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ +N+ N K D+YTY I++G CK +EA ++ + +
Sbjct: 567 ELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLD----------- 615
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
++TFN +I AL G+ A+ L + +G +P ++ ++ + L ++
Sbjct: 616 -------SVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEE 664
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+L G+ +E +ML + GL+PD TY ++D CK GR EA + +G+
Sbjct: 240 GYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKP 299
Query: 157 NVVTLIQLLQRL-------EM----------GHIPRTITFNNVIQALCGVGKIHKALLLL 199
+V LL EM G P FN + A I +A+ +
Sbjct: 300 DVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIF 359
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M + G P S LI L
Sbjct: 360 NKMRQQGLSPDVVSFGALIDAL 381
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 82/222 (36%), Gaps = 38/222 (17%)
Query: 21 SRSPSAAESLDLKENPRSLQAQRFVDKIKASP---LKERIDIFNSIKKDGTNWSVSDFND 77
SR SAA R L+ +R + S L E + +F+ + SV FN
Sbjct: 2 SRRVSAAAD-------RCLELERVIASRARSGSLGLDEALKLFDELLHCARPASVRAFNQ 54
Query: 78 LLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
LL T V RV + + + + P+ TY+ ++ FC++G
Sbjct: 55 LL----------TVVSRAGCSSASERVVSLFTRMARECSSKVAPNACTYSILIGCFCRMG 104
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRL------------------EMGHIPRTITF 179
R ++ G NV+ + QLL+ L E G P + +
Sbjct: 105 RLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAY 164
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
N VI G++ KA L M + G P+ ++ +I L
Sbjct: 165 NTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGL 206
>gi|147788269|emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
Length = 472
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA +L + G KPD Y Y IM G+C + + +EA+ + + E GV ++VT
Sbjct: 255 LREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAIGVYKKMKEEGVEPDLVTYNT 314
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L EMGH P +T+ +++ LC G AL LL M G
Sbjct: 315 LIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGLCREGNALGALALLEEMEAKG 374
Query: 207 KIPSRTSHDMLIKKL 221
P+ +++ L+ L
Sbjct: 375 CSPNSCTYNTLLHGL 389
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E I ++ +K++G + +N L+ L GRV+EA + L +
Sbjct: 292 EAIGVYKKMKEEGVEPDLVTYNTLIFGLSK----------------SGRVKEARKFLDIM 335
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
G PD TYT++M+G C+ G + A+ LL E +G + P
Sbjct: 336 AEMGHFPDAVTYTSLMNGLCREGNALGALALLEEMEAKGCS------------------P 377
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ T+N ++ LC + + + + L +M G + S+ ++ L ++
Sbjct: 378 NSCTYNTLLHGLCKLRMLERGIELYGVMKSGGMKLEKASYATFVRALCKE 427
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 36/192 (18%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A+ L++ ++ F +K G + ++ LL AL D+ GR+ EA+
Sbjct: 154 ANRLEQAMEFFKEMKASGVEPDLESYHILLSAL-----SDS-----------GRMAEAHA 197
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQ 166
+ + PD+ TY +MDG+CK+G++ EA L+ E ++ G NV T +I
Sbjct: 198 LFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYC 254
Query: 167 RL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
+L E +P +TFN +I C G + A+ L M + G +
Sbjct: 255 KLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIV 314
Query: 213 SHDMLIKKLDQQ 224
+++ LI L ++
Sbjct: 315 TYNTLIDSLCKK 326
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA L++ I +F ++K G ++ +N L+ +L G V A
Sbjct: 289 CKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKR---------------GGVYTA 333
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++ ++ GL P + TY +++ GFC R +EAM+ +E +E NV+T L+
Sbjct: 334 VDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDE-MEGKCAPNVITYSILIDG 392
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L G+ P +T+ +I C G++ ALL M G P+
Sbjct: 393 LCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPN 452
Query: 211 RTSHDMLIKKL 221
+ LI L
Sbjct: 453 TVIFNTLIDGL 463
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 38/184 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------ 98
+D+FN ++ G ++ +N L+ A+++F
Sbjct: 334 VDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDGL 393
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
V R++EA + L ++K G P V TY +++GFCK G A+
Sbjct: 394 CKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSAL--------------- 438
Query: 159 VTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+++++ G P T+ FN +I LC + + L LL M+ G P +++ L
Sbjct: 439 ----LFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCL 494
Query: 218 IKKL 221
I L
Sbjct: 495 ISGL 498
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 88/216 (40%), Gaps = 40/216 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
K + + + +F+ +K G + S N LL+ L + + +A+K F
Sbjct: 43 CKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTS 102
Query: 96 SNH-------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC----KVGRSNEAME 144
++H M GRV +A L +++ TY ++ G C R +AME
Sbjct: 103 ASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAME 162
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLE--------------MGHIPRTITFNNVIQALCGVG 190
E GV ++ + LL L M P +T+N ++ C +G
Sbjct: 163 FFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIG 222
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIK---KLDQ 223
+ ++A L+ + + G P+ ++ ++I KLD+
Sbjct: 223 QTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDK 258
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 41/188 (21%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
+ ++ K P + +D + K +KE +K G +V + L+
Sbjct: 373 DEMEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCG 432
Query: 87 EQDTAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYT 127
E +A+ FF + G R + +L ++ +G KPDV TY
Sbjct: 433 ELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYN 492
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC 187
++ G C R +A L + M P TFN +I+ LC
Sbjct: 493 CLISGLCSANRVEDAQRLFD---------------------GMACAPNVTTFNFLIRGLC 531
Query: 188 GVGKIHKA 195
K+ +A
Sbjct: 532 AQKKVEEA 539
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 34/144 (23%)
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
N LL LV + D A++ F E+L + P+ +TY ++ GFCK
Sbjct: 1 NALLSGLVSARKHDQALRLFK------------EVLAGL----FAPNAHTYNVLIRGFCK 44
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
G+ ++A+ + ++ G+ +P T N ++ LC +G++ A
Sbjct: 45 GGQMHQAVSVFSDMKSSGL------------------LPNASTMNTLLLGLCEIGQMSSA 86
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIK 219
L L M +P+ SH++L++
Sbjct: 87 LKLFREMQAGPFLPTSASHNILLR 110
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 39/186 (20%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----------- 102
+E ++ N+ K+G +V F +L+ M + D A++ N +M
Sbjct: 374 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRM-KNKMMSSKCKLDLQVFGK 432
Query: 103 ---------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
R++EA E+L + +GL P+V TYT+I+DG+CK G+ + A+E+L + +ER
Sbjct: 433 LINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVL-KMMERD 491
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
Q P T+N+++ L K+HKA+ LL M + G IP+ +
Sbjct: 492 GCQ-----------------PNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVIT 534
Query: 214 HDMLIK 219
+ L++
Sbjct: 535 YTTLLQ 540
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 89/198 (44%), Gaps = 35/198 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK--------------FFSNHLMVG-- 102
+F+++ ++G SV +N +++ L + A+K + N L+ G
Sbjct: 310 LFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC 369
Query: 103 --RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ EEA E+L N +G P V T+T +++G+C + ++A+ + N+ + ++
Sbjct: 370 DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQV 429
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+L+ L G +P IT+ ++I C GK+ AL +L +M
Sbjct: 430 FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 489
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P+ +++ L+ L
Sbjct: 490 RDGCQPNAWTYNSLMYGL 507
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 33/163 (20%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F +++ GR+E+A ++++ ++ +G+ PDV TY ++DG +G + A L
Sbjct: 706 TYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRM 765
Query: 150 IERGVTQNVVTLIQLLQRLEMGHI---------------------------------PRT 176
+ N T LL+ L G++ P
Sbjct: 766 VGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTV 825
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T++++I C G++ +A LLL M G P+ + +LIK
Sbjct: 826 TTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIK 868
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G + A ++ + ++G PD YTY+ ++ CK R NEA+ +L++ RG+ +
Sbjct: 612 AGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFA 671
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + EM GH P T+ I + C G++ A L+ M
Sbjct: 672 YTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKME 731
Query: 204 EHGKIPSRTSHDMLI 218
G P ++++LI
Sbjct: 732 REGVAPDVVTYNILI 746
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EA + + +K DG P+V +T ++ G CK GR +A L + + GV
Sbjct: 269 VREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGV--------- 319
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+P +T+N +I +G+++ AL + LM ++G P +++ LI L
Sbjct: 320 ---------VPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCD 370
Query: 224 Q 224
Q
Sbjct: 371 Q 371
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 91/201 (45%), Gaps = 39/201 (19%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMVG 102
+++ +++DG + +N L+ LV + A+ + L+ G
Sbjct: 482 LEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQG 541
Query: 103 RVEE-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ +E A+ + ++ +GLKPD + Y + D CK GR+ EA + + +GV
Sbjct: 542 QCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFI---VRKGVALT 598
Query: 158 VV---TLIQ-------------LLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V TLI L++R+ + G P + T++ ++ ALC ++++AL +L
Sbjct: 599 KVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILD 658
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G + ++ +LI ++
Sbjct: 659 QMSLRGIKCTIFAYTILIDEM 679
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 21/133 (15%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN--VVTLI--- 162
+++L + GL P V TY++++ GFCK GR EA LL+ +G++ N + TL+
Sbjct: 810 WQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKC 869
Query: 163 ----QLLQRL--------EMGHIPRTITFNNVIQALCGVGKIHKA----LLLLFLMYEHG 206
+ ++ E G P+ ++ ++ LC G K LL L Y H
Sbjct: 870 CCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHD 929
Query: 207 KIPSRTSHDMLIK 219
++ + +D L+K
Sbjct: 930 EVAWKILNDGLLK 942
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 34/166 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+A ++E + +F +K+DG + +V F L+ L GRV +A
Sbjct: 264 CEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCK----------------SGRVGDA 307
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG------VTQNVVTL 161
+ + +G+ P V TY A++ G+ K+GR N+A++ + E +E+ T N +
Sbjct: 308 RLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALK-IKELMEKNGCHPDDWTYNTLIY 366
Query: 162 IQLLQRLE-----------MGHIPRTITFNNVIQALCGVGKIHKAL 196
Q+ E G P +TF N+I C K AL
Sbjct: 367 GLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDAL 412
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ + A M + + G KP TYT ++ +CK GR +A +L+ + GV +VVT
Sbjct: 683 GKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTY 742
Query: 162 IQLLQRL-EMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLM 202
L+ MG+I R T ++ A C LLL L+
Sbjct: 743 NILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLL 785
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A+ + GL+P+ +T A++ G+C+ G +A L G +N +
Sbjct: 197 GDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSY 256
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+Q L G P F +I LC G++ A LL M +
Sbjct: 257 TILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQ 316
Query: 205 HGKIPSRTSHDMLI 218
+G +PS +++ +I
Sbjct: 317 NGVVPSVMTYNAMI 330
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
DGL PD TY ++ +CK G A +E G+ P T
Sbjct: 177 DGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLE------------------PET 218
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T N ++ C G++ KA L +M G + S+ +LI+ L
Sbjct: 219 FTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGL 263
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G V EA + + DG PD + Y+ ++ G C GR+ EA+ LL +A+ +G NV
Sbjct: 157 AGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAV 216
Query: 161 LIQLLQR------LEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ LE+ G +P T+ +I C GK+ +A++L M
Sbjct: 217 YNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMI 276
Query: 204 EHGKIPSRTSHDMLIK 219
E G P+ ++ LI+
Sbjct: 277 EAGLAPNVVTYTTLIQ 292
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ + A+ ++ + +G PD + Y++++DG C+ + EA+ LLN+ IE GV N V
Sbjct: 368 GKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPF 427
Query: 162 IQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + G P +T+ I++ C G++ A ++ M +
Sbjct: 428 TILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMID 487
Query: 205 HGKIPSRTSHDMLIK 219
HG P+ T+++ LIK
Sbjct: 488 HGVRPNLTTYNTLIK 502
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ G +E A ++ +++ G P+V TYT ++ GFCK G+ AM L + IE G+
Sbjct: 223 GYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAP 282
Query: 157 NVVTLIQLLQ-RLEMGHIPRTITFNNVIQALCGVGKIH-KALLLLFLMYEHGKI 208
NVVT L+Q + GH+ + ++A CG+ L+L+ + +HG+I
Sbjct: 283 NVVTYTTLIQGQCSEGHLEHAFRLLHSMEA-CGLAPNEWTCLVLIDALCKHGRI 335
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 83/204 (40%), Gaps = 36/204 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------- 102
L+ IDIF ++ G +V + L+ + + A+ +S + G
Sbjct: 230 LELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTT 289
Query: 103 ---------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+E A+ +L +++ GL P+ +T ++D CK GR EA + L +++G
Sbjct: 290 LIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKG 349
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ N V ++ L G +P ++++I LC K+ +A+
Sbjct: 350 IKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAI 409
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKK 220
LL M E G + +LI K
Sbjct: 410 SLLNDMIESGVQANAVPFTILIDK 433
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 32/176 (18%)
Query: 75 FNDLLMALV---MLNEQD------------TAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119
N LLMAL ML++ + T + + G + A L ++ GL
Sbjct: 46 LNTLLMALARHGMLSDMESLAARMPVRNLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGL 105
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM--------- 170
PD + YT+ + G+C+ G A L +RG + T LLQ L
Sbjct: 106 APDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMA 165
Query: 171 --------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G P + ++ ++ LCG G+ +A+ LL G +P+ ++ LI
Sbjct: 166 VFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALI 221
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F ++ GR+E+A M++ + + G++P++ TY ++ G+ +G ++A L
Sbjct: 461 TYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNM 520
Query: 150 IERGVTQN 157
I+ G N
Sbjct: 521 IDNGCKPN 528
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 39/186 (20%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----------- 102
+E ++ N+ K+G +V F +L+ M + D A++ N +M
Sbjct: 374 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRM-KNKMMSSKCKLDLQVFGK 432
Query: 103 ---------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
R++EA E+L + +GL P+V TYT+I+DG+CK G+ + A+E+L + +ER
Sbjct: 433 LINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVL-KMMERD 491
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
Q P T+N+++ L K+HKA+ LL M + G IP+ +
Sbjct: 492 GCQ-----------------PNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVIT 534
Query: 214 HDMLIK 219
+ L++
Sbjct: 535 YTTLLQ 540
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 89/198 (44%), Gaps = 35/198 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK--------------FFSNHLMVG-- 102
+F+++ ++G SV +N +++ L + A+K + N L+ G
Sbjct: 310 LFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC 369
Query: 103 --RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ EEA E+L N +G P V T+T +++G+C + ++A+ + N+ + ++
Sbjct: 370 DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQV 429
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+L+ L G +P IT+ ++I C GK+ AL +L +M
Sbjct: 430 FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 489
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P+ +++ L+ L
Sbjct: 490 RDGCQPNAWTYNSLMYGL 507
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 33/163 (20%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F +++ GR+E+A ++++ ++ +G+ PDV TY ++DG +G + A L
Sbjct: 706 TYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRM 765
Query: 150 IERGVTQNVVTLIQLLQRLEMGHI---------------------------------PRT 176
+ N T LL+ L G++ P
Sbjct: 766 VGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTV 825
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T++++I C G++ +A LLL M G P+ + +LIK
Sbjct: 826 TTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIK 868
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G + A ++ + ++G PD YTY+ ++ CK R NEA+ +L++ RG+ +
Sbjct: 612 AGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFA 671
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + EM GH P T+ I + C G++ A L+ M
Sbjct: 672 YTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKME 731
Query: 204 EHGKIPSRTSHDMLI 218
G P ++++LI
Sbjct: 732 REGVAPDVVTYNILI 746
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 91/201 (45%), Gaps = 39/201 (19%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMVG 102
+++ +++DG + +N L+ LV + A+ + L+ G
Sbjct: 482 LEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQG 541
Query: 103 RVEE-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ +E A+ + ++ +GLKPD + Y + D CK GR+ EA + + +GV
Sbjct: 542 QCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFI---VRKGVALT 598
Query: 158 VV---TLIQ-------------LLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V TLI L++R+ + G P + T++ ++ ALC ++++AL +L
Sbjct: 599 KVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILD 658
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G + ++ +LI ++
Sbjct: 659 QMSLRGIKCTIFAYTILIDEM 679
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A + + +K DG P+V +T ++ G CK GR +A L + + GV
Sbjct: 269 VRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGV--------- 319
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+P +T+N +I +G+++ AL + LM ++G P +++ LI L
Sbjct: 320 ---------VPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCD 370
Query: 224 Q 224
Q
Sbjct: 371 Q 371
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 21/133 (15%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN--VVTLI--- 162
+++L + GL P V TY++++ GFCK GR EA LL+ +G++ N + TL+
Sbjct: 810 WQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKC 869
Query: 163 ----QLLQRL--------EMGHIPRTITFNNVIQALCGVGKIHKA----LLLLFLMYEHG 206
+ ++ E G P+ ++ ++ LC G K LL L Y H
Sbjct: 870 CCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHD 929
Query: 207 KIPSRTSHDMLIK 219
++ + +D L+K
Sbjct: 930 EVAWKILNDGLLK 942
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ + A M + + G KP TYT ++ +CK GR +A +L+ + GV +VVT
Sbjct: 683 GKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTY 742
Query: 162 IQLLQRL-EMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLM 202
L+ MG+I R T ++ A C LLL L+
Sbjct: 743 NILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLL 785
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 34/164 (20%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A +++ + +F +K+DG + +V F L+ L GRV +A
Sbjct: 266 AKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCK----------------SGRVGDARL 309
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG------VTQNVVTLIQ 163
+ + +G+ P V TY A++ G+ K+GR N+A++ + E +E+ T N +
Sbjct: 310 LFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALK-IKELMEKNGCHPDDWTYNTLIYGL 368
Query: 164 LLQRLE-----------MGHIPRTITFNNVIQALCGVGKIHKAL 196
Q+ E G P +TF N+I C K AL
Sbjct: 369 CDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDAL 412
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A+ + GL+P+ +T A++ G+C+ G +A L G +N +
Sbjct: 197 GDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSY 256
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+Q L G P F +I LC G++ A LL M +
Sbjct: 257 TILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQ 316
Query: 205 HGKIPSRTSHDMLI 218
+G +PS +++ +I
Sbjct: 317 NGVVPSVMTYNAMI 330
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
DGL PD TY ++ +CK G A +E G+ P T
Sbjct: 177 DGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLE------------------PET 218
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T N ++ C G++ KA L +M G + S+ +LI+ L
Sbjct: 219 FTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGL 263
>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
velutina]
Length = 406
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G S +N L+ + ++ +G ++E + + + G
Sbjct: 139 VFDAITKWGLRPSAVSYNTLM----------------NGYIRLGVLDEGFRLKSAMLASG 182
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 183 VQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 242
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 243 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLI 299
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ ++ GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 271 GDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVY 330
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ +I C G + K LL M
Sbjct: 331 TALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 390
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 391 DGHVPSVVTYNVLM 404
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P +Y +M+G+ ++G +E L +
Sbjct: 118 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSA 177
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 178 MLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 237
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 238 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 270
>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 495
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 18/135 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++EA+E + +K + DV TYT ++ GF G +A + +E ++ GV NV T
Sbjct: 258 QIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYN 317
Query: 163 QLLQRL--------------EMGH----IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+Q L EM +P +T+N VI+ LC VG + +AL + M E
Sbjct: 318 ALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGE 377
Query: 205 HGKIPSRTSHDMLIK 219
HG +++++I+
Sbjct: 378 HGLRACVQTYNVVIR 392
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 39/216 (18%)
Query: 28 ESLDLKENPRSLQ--AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
SL L +P++L A+R+ K + F S+ + G + FN LL L
Sbjct: 131 RSLRLGPSPKTLAILAERYASNGKPH---RAVRTFLSMAEHGIRQDLHSFNTLLDILCKS 187
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
RVE A+ +L + + +PD TY + +G+C + R+ A+ +
Sbjct: 188 K----------------RVETAHSLLKTLTSR-FRPDTVTYNILANGYCLIKRTPMALRV 230
Query: 146 LNEAIERGVTQNVVTLIQLLQ--------------RLEMGHIP---RTITFNNVIQALCG 188
L E ++RG+ +VT +L+ LEM +T+ VI
Sbjct: 231 LKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGV 290
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G + KA + M + G +P+ +++ LI+ L ++
Sbjct: 291 AGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKK 326
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 79/202 (39%), Gaps = 40/202 (19%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------- 98
A +K+ +F+ + K+G +V+ +N L+ L + + AV F
Sbjct: 291 AGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVV 350
Query: 99 ---------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME----- 144
VG +E A + + GL+ V TY ++ FC G +A+E
Sbjct: 351 TYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKM 410
Query: 145 --------------LLNEAIERGVTQNVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGV 189
L++ R ++++V +LL + + G +PR TFN V+ L
Sbjct: 411 GDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFNRVLNGLVIT 470
Query: 190 GKIHKALLLLFLMYEHGKIPSR 211
G A +L + G+I R
Sbjct: 471 GNQDFAKEILRMQSRCGRIVRR 492
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA + +KN+G +PD TY+ +++G CK GR ++ MEL + +GV N +
Sbjct: 372 GSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFY 431
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G + +N +I AL GKI +AL L M E
Sbjct: 432 ASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEE 491
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G + + +LI L ++
Sbjct: 492 EGCDQTVYTFTILIDGLFKE 511
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 89/227 (39%), Gaps = 41/227 (18%)
Query: 16 LVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
L+DS S++ S E++ L E P ++ V+ + K+ L + +++F+ + G
Sbjct: 364 LIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKG 423
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+ + L+ L GR+E+A + + G D Y Y
Sbjct: 424 VAINAMFYASLIDGLGK----------------AGRIEDAENLFEEMSEKGCARDSYCYN 467
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EM 170
AI+D K G+ ++A+ L E G Q V T L+ L +
Sbjct: 468 AIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDK 527
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
G P +F + LC GK+ +A +L + G IP DM+
Sbjct: 528 GITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPETAFEDMI 574
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 42/176 (23%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
++E + ++ +K++G + S+ +N L+ LV N + + E+ +E++
Sbjct: 199 VEELLWVWRRMKENGIDPSLYTYNFLVNGLV-------------NSMFIESAEKVFEVM- 244
Query: 113 NVKNDGLK--PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM 170
DG K PD TY ++ G+CK G+ +AME + +EM
Sbjct: 245 ----DGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRD-------------------MEM 281
Query: 171 GHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG-KIPSRTSHDMLIKKLDQQ 224
++ P IT+ +IQA L L M E G +IP S+ ++I L +Q
Sbjct: 282 KNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPH-SYSLVIGGLCKQ 336
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 23/109 (21%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++ +K F N +G VEE + +K +G+ P +YTY +++G + E
Sbjct: 187 NSLIKSFGN---LGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVN--------SMFIE 235
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKAL 196
+ E+ + + ++ G I P T+T+N +I+ C GK+ KA+
Sbjct: 236 SAEK-----------VFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAM 273
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLL------------------MALVMLNEQD 89
KA +++ +++F +++ G N + F L+ MA +
Sbjct: 325 CKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDL 384
Query: 90 TAVKFFSNHLMVGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
A +N L R ++ A +++ ++N+GLKPD TYT ++DGFCK G + AME+ E
Sbjct: 385 VAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQE 444
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
+ GV + VT L+ L E G P T+ VI A C
Sbjct: 445 MSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSD 504
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ LL M G+ P ++++++
Sbjct: 505 VKTGFKLLKEMQNKGRKPGVVTYNVVM 531
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 41/223 (18%)
Query: 21 SRSPSAAES-------LDLKENPRSLQAQRFV-DKIKASPLKERIDIFNSIKKDGTNWSV 72
+R PS E+ LD P + Q + D I++ L ++F+ + + G +V
Sbjct: 220 NRLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTV 279
Query: 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132
FN L+ + ++ ++A + + G + +A G+ PDVYTY A M G
Sbjct: 280 VTFNTLMSGMCKASDLNSA------NALRGLMAKA----------GVAPDVYTYGAFMQG 323
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR----------LEM-------GHIPR 175
CK GR +A+E+ E ERGV N V L+ LE+ G
Sbjct: 324 LCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTD 383
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +N + LC V + A ++ M +G P + ++ LI
Sbjct: 384 LVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLI 426
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+ +++L ++N G KP V TY +M+GFC +G+ A LLN + GV
Sbjct: 505 VKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGV--------- 555
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
P IT+N ++ C GK+ A
Sbjct: 556 ---------CPDDITYNILLDGHCKHGKVRDA 578
>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 932
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 36/206 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV----------MLNE---------QD 89
+A ++ ++IF+ +++ G +V +N L++ LV +L+E +
Sbjct: 576 RAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEH 635
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + +G E+A++ ++N+GL+ DVYTY A++ CK GR A+ + E
Sbjct: 636 TYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEM 695
Query: 150 IERGVTQN----------------VVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKI 192
+ + +N V L+Q++ + G +P T+ + I A C G +
Sbjct: 696 SAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDM 755
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
KA ++ M G P+ ++ LI
Sbjct: 756 QKATEIIQEMEASGIKPNLKTYTTLI 781
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 18/112 (16%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A+ + + DGLKPDV Y I+ FC +G + A + +++ +Q
Sbjct: 513 AFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRA----------------ICMVRQMQ 556
Query: 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ H P T TF +I G++ +AL + +M G IP+ +++ LI
Sbjct: 557 KER--HRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALI 606
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA +++ ++ +GL PD++TYT+ ++ CK G +A E++ E G+ N+ T
Sbjct: 718 GDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTY 777
Query: 162 IQLLQRLEMGHIP 174
L+ +P
Sbjct: 778 TTLINGWARASMP 790
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ M+G E+ + +K G P V +Y +++ + KVG+ ++A+E+ G+
Sbjct: 433 GYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKH 492
Query: 157 NVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
N+ T L+ + G P + +NN+I A CG+G + +A+ ++
Sbjct: 493 NMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMV 552
Query: 200 FLMYEHGKIPS 210
M + P+
Sbjct: 553 RQMQKERHRPT 563
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 20/119 (16%)
Query: 101 VGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
VGR +EEA + +K +G++ + TY+ I+ GF K+G ++ A EA E+ + N V
Sbjct: 331 VGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAV 390
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG-KIPSRTSHDML 217
+ +I A C + + +A L+ M E G P H M+
Sbjct: 391 ------------------IYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMM 431
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 43/90 (47%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ + + G W +D + +L + T F + G +++A E++ ++ G
Sbjct: 710 LIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASG 769
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+KP++ TYT +++G+ + +A+ E
Sbjct: 770 IKPNLKTYTTLINGWARASMPEKALSCFEE 799
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 90/222 (40%), Gaps = 46/222 (20%)
Query: 37 RSL-QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV----------ML 85
RSL QAQRF +E +F + G + +V ++ L+ L +L
Sbjct: 60 RSLCQAQRF---------EEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELL 110
Query: 86 NE------QDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
NE Q V + S +G+++EA ++ + G PD Y ++DGF K
Sbjct: 111 NEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKK 170
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQR-----------------LEMGHIPRTITF 179
G EA L E +E+G V T LL L G +P TF
Sbjct: 171 GDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTF 230
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
NN++ C +G + +A L M G P S++ L++ +
Sbjct: 231 NNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGM 272
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------- 100
+ + E ++ N + G +V + LL L + + AV FS +
Sbjct: 98 CRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDG 157
Query: 101 ------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G + EAY + + G P V+TY +++ GF + G L +
Sbjct: 158 VVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKD 217
Query: 149 AIERGVTQNVVTLIQLLQR--------------LEM---GHIPRTITFNNVIQALCGVGK 191
+ +G N+ T LL LEM G P +++N +++ +C GK
Sbjct: 218 MLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGK 277
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
H+A LL M G P S+++LI
Sbjct: 278 PHEAQRLLREMIRSGVGPDIVSYNILI 304
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 36/197 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE--- 105
K + E +F + + G +V +N LL E F + L G V
Sbjct: 169 KKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIF 228
Query: 106 ----------------EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
EA+ + + +++ G PDV +Y +M G C G+ +EA LL E
Sbjct: 229 TFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREM 288
Query: 150 IERGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKI 192
I GV ++V+ I+L + + G P +++ +I LC GK+
Sbjct: 289 IRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKV 348
Query: 193 HKALLLLFLMYEHGKIP 209
A ++ M +G P
Sbjct: 349 GAAFVVFKDMIANGSAP 365
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A ++ + GL+PD ++Y+ I+D C+ G+ A + + I G + +
Sbjct: 311 GALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVV 370
Query: 162 IQLLQRLEMG 171
I L+ L G
Sbjct: 371 IPLVIGLCRG 380
>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59900
gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 907
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 26/167 (15%)
Query: 81 ALVMLNEQ-DTAVKF--------FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
AL L E DT +K + H G + A + + N L+P V TYT++M
Sbjct: 421 ALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMG 480
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EMGHI---P 174
G+C G+ N+A+ L +E +G+ ++ T LL L EM P
Sbjct: 481 GYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKP 540
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+T+N +I+ C G + KA L M E G +P S+ LI L
Sbjct: 541 NRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGL 587
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 22/116 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA E++ + DG+ PD TYT +++ C+ +A+EL N E+G+
Sbjct: 801 GRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIR------ 854
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP----SRTS 213
P + +N +I C G++ KA L M G IP SRT+
Sbjct: 855 ------------PDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRTT 898
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE---------AIER 152
G +EA+ + + N+G P+ TYTA+++G CK G NEA L ++ +
Sbjct: 696 GDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTY 755
Query: 153 GVTQNVVT--------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
G +++T ++L + G + T T+N +I+ C G+I +A L+ M
Sbjct: 756 GCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIG 815
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P ++ +I +L ++
Sbjct: 816 DGVSPDCITYTTMINELCRR 835
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 18/143 (12%)
Query: 97 NHLMVGRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ L GR E+L + + GL+P+ TY+ ++D FC+ G+ + A+ L E ++ G+
Sbjct: 375 DSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLK 434
Query: 156 QNVVTLIQLLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLL 198
+V L+ + G I P +T+ +++ C GKI+KAL L
Sbjct: 435 LSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRL 494
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
M G PS + L+ L
Sbjct: 495 YHEMTGKGIAPSIYTFTTLLSGL 517
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 18/108 (16%)
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM 170
L N GL + TY ++ GFC+ GR EA EL+ I GV+
Sbjct: 775 LHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVS--------------- 819
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P IT+ +I LC + KA+ L M E G P R +++ LI
Sbjct: 820 ---PDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLI 864
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI------------ 150
+V EA + ++ LKPDV TY ++ G CKV +E+++E +
Sbjct: 277 KVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVS 336
Query: 151 -------ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+RG + + L++ + ++ G P +N +I +LC K H+A LL M
Sbjct: 337 SLVEGLRKRGKIEEALNLVK--RVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMG 394
Query: 204 EHGKIPSRTSHDMLI 218
+ G P+ ++ +LI
Sbjct: 395 KIGLRPNDVTYSILI 409
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 84/234 (35%), Gaps = 71/234 (30%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMVGRV 104
+++ + G S+ F LL L AVK F+ N ++ G
Sbjct: 494 LYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYC 553
Query: 105 EE-----AYEMLMNVKNDGLKPDVYTY--------------------------------- 126
EE A+E L + G+ PD Y+Y
Sbjct: 554 EEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEI 613
Query: 127 --TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----------------LIQLLQRL 168
T ++ GFC+ G+ EA+ + E ++RGV ++V LL+ +
Sbjct: 614 CYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEM 673
Query: 169 -EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G P + + ++I A G +A + LM G +P+ ++ +I L
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGL 727
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++EEA ++ V + G+ P+++ Y A++D CK GR ELL + + +
Sbjct: 346 GKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCK-GRKFHEAELLFDRMGK--------- 395
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+G P +T++ +I C GK+ AL L M + G
Sbjct: 396 --------IGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTG 432
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G ++A +ML + P+V+TYT ++D C+ G+ EA + + ++ G+ ++T
Sbjct: 313 IGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIIT 372
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
QLL +E G+ P T+N +++ LC V K +KA LLL +
Sbjct: 373 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVV 432
Query: 204 EHGKIPSRTSHDMLI 218
++G +P R ++++L+
Sbjct: 433 DNGLLPDRVTYNILV 447
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ A+ + ++ + GL+PD +T+TA++DG CK+GR +A +L +++G++ + VT
Sbjct: 454 GQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTF 513
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ +E + TFN + AL K+++A +L M +
Sbjct: 514 TALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMK 573
Query: 205 HGKIPSRTSHDMLIK 219
+G +PS +H +LI+
Sbjct: 574 YGLVPSVVTHTILIE 588
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA+++ + G +P TYT ++ C +G +++AM++L+E + NV T
Sbjct: 279 GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTY 338
Query: 162 IQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ R L+ G P ITFN +I C G + A LL +M +
Sbjct: 339 TILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 398
Query: 205 HGKIPSRTSHDMLIKKL 221
P+ +++ L++ L
Sbjct: 399 GNCKPNIRTYNELMEGL 415
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 28/153 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG--RVEEAYE---MLMN 113
+ N K+G W VS F L++++ ++ + N LM G RV ++Y+ +L
Sbjct: 376 LINGYCKEG--WVVSAFQ--LLSVMEKGNCKPNIRTY-NELMEGLCRVSKSYKAFLLLRR 430
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
V ++GL PD TY ++DGFCK G+ N A + N G+
Sbjct: 431 VVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLE------------------ 472
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
P TF +I LC +G++ +A +L M + G
Sbjct: 473 PDGFTFTALIDGLCKLGRLEQANGILGSMVKKG 505
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
K + +P+ TY+ ++ G C+ GR EA +L E +E+G P
Sbjct: 257 KEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQ------------------P 298
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
T T+ +I+A C +G KA+ +L M +P+ ++ +LI +L ++
Sbjct: 299 STRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCRE 348
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 67 GTNWSVSDFNDLL---MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123
G ++ +++ N +L M ++ T H G + +ML +K G P+V
Sbjct: 556 GKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNV 615
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI 183
YTYT I++G C GR EA +L GV+ P T+ ++
Sbjct: 616 YTYTIIINGLCNNGRVEEAETILFSMSSFGVS------------------PNHFTYAVLV 657
Query: 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+A G++ +A ++ M ++G P+ + L+
Sbjct: 658 KAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALL 692
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC--KVGRSNEAMELLNEAIERGVT 155
H+ GR++ A++++ + +G +P+ + Y+A++ GF A+ + R ++
Sbjct: 660 HVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLS 719
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
L ++ +P +N ++ LC G+I +A L M +HG P +
Sbjct: 720 SEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK 775
>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
micrantha]
Length = 431
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + + A EL +E + +G+ N VT L+
Sbjct: 208 VQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 324
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD +TYT ++DG CK G + A E I+ + + V
Sbjct: 296 GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ +I C G + K LL M+
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHR 415
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 416 DGHAPSVVTYNVLM 429
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 143 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 202
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 295
>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
Length = 598
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 33 KENPRSLQAQRFVDKIK----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
KENP+ ++ + FV ++ A +K+ I++ + + K G F LL AL
Sbjct: 168 KENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSV 227
Query: 89 DTAVKFFSNHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
A K F + M VG++ EA +L+ + G +PD+ YT ++ G+ G+ +A +LL
Sbjct: 228 KDAAKLFEDMRMRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLR 287
Query: 148 EAIERGVTQNVVTLIQLLQRL--------------EMGHI---PRTITFNNVIQALCGVG 190
+ RG N L+Q L EM +T+ ++ C G
Sbjct: 288 DMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWG 347
Query: 191 KIHKALLLLFLMYEHGKIPSRTSH 214
KI K ++L M + G +PS ++
Sbjct: 348 KIDKCYIVLDDMIKKGLMPSELTY 371
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 76/141 (53%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V R+EEA ++ + ++ + DV TYTA++ GFCK G+ ++ +L++ I++G+ + +T
Sbjct: 311 VDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELT 370
Query: 161 ----------------LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++L++++ ++ + P +N VI+ C +G++ +A+ L M
Sbjct: 371 YMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEME 430
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
E+G P + ++I L Q
Sbjct: 431 ENGLSPGVDTFVIMINGLASQ 451
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA + +KN+G +PD TY+ +++G CK GR ++ MEL + +GV N +
Sbjct: 374 GSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFY 433
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E G + +N +I AL GKI +AL L M E
Sbjct: 434 ASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEE 493
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G + + +LI L ++
Sbjct: 494 EGCDQTVYTFTILIDGLFKE 513
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 89/227 (39%), Gaps = 41/227 (18%)
Query: 16 LVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
L+DS S++ S E++ L E P ++ V+ + K+ L + +++F+ + G
Sbjct: 366 LIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKG 425
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+ + L+ L GR+E+A + + G D Y Y
Sbjct: 426 VAINAMFYASLIDGLGK----------------AGRIEDAENLFEEMSEKGCARDSYCYN 469
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EM 170
AI+D K G+ ++A+ L E G Q V T L+ L +
Sbjct: 470 AIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDK 529
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
G P +F + LC GK+ +A +L + G IP DM+
Sbjct: 530 GITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPETAFEDMI 576
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 42/176 (23%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
++E + ++ +K++G + S+ +N L+ LV N + + E+ +E++
Sbjct: 201 VEELLWVWRRMKENGIDPSLYTYNFLVNGLV-------------NSMFIESAEKVFEVM- 246
Query: 113 NVKNDGLK--PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM 170
DG K PD TY ++ G+CK G+ +AME + +EM
Sbjct: 247 ----DGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRD-------------------MEM 283
Query: 171 GHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG-KIPSRTSHDMLIKKLDQQ 224
++ P IT+ +IQA L L M E G +IP S+ ++I L +Q
Sbjct: 284 KNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPH-SYSLVIGGLCKQ 338
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 23/109 (21%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++ +K F N +G VEE + +K +G+ P +YTY +++G + E
Sbjct: 189 NSLIKSFGN---LGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVN--------SMFIE 237
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKAL 196
+ E+ + + ++ G I P T+T+N +I+ C GK+ KA+
Sbjct: 238 SAEK-----------VFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAM 275
>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
cujabensis]
Length = 409
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 160 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 203
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
PDVYTY+ +++G CK + + A EL +E + +G+ N VT L+
Sbjct: 204 XXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAM 263
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 264 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLI 320
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD +TYT ++DG CK G + A I+ + + V
Sbjct: 292 GDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAY 351
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + L +G P T+ +I C G + K LL
Sbjct: 352 TALISGLCQEGRSVDAEKMLREMLSVGLXPDAGTYTMIINEFCKKGDVWKGSKLL 406
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 139 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 198
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ G +V T L+ L EM G +P +TF +I C G+
Sbjct: 199 MLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGR 258
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 259 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 291
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 21/178 (11%)
Query: 64 KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123
K DG N F+++L+ ++ N T H GRV+ A E+ + + L PD+
Sbjct: 223 KMDGAN---ELFDEMLVKGLVPNXV-TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDL 278
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------EMGHIPR 175
TY ++ G CK G +A +L++E +G+ + T L+ H R
Sbjct: 279 ITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKR 338
Query: 176 TI---------TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
I + +I LC G+ A +L M G P ++ M+I + ++
Sbjct: 339 MIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLXPDAGTYTMIINEFCKK 396
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GR +A +ML + + GL PD TYT I++ FCK G + +LL E
Sbjct: 362 GRSVDAEKMLREMLSVGLXPDAGTYTMIINEFCKKGDVWKGSKLLKE 408
>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
succulentifolia]
Length = 429
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV FN L+ + ++ +G + E + + ++ G
Sbjct: 162 VFDAITKWGLRPSVVSFNTLM----------------NGYIKLGDLNEXFRLKKAMQASG 205
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++ EL +E ++ G+ N VT L+
Sbjct: 206 VQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAM 265
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P +T+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 266 EIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 322
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 294 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAY 353
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + L+ M
Sbjct: 354 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQR 413
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 414 DGYVPSVVTYNVLM 427
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 22/153 (14%)
Query: 94 FFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V ++ +M+G+ K+G NE L
Sbjct: 141 YFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKA 200
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
GV +V T L+ + L+ G +P +TF +I C G+
Sbjct: 201 MQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGR 260
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 261 VDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKK 293
>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 616
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 20/149 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF + +V RV E E ++ G PDV TYT +++GFCK G +EA+ LL
Sbjct: 335 VDFFCQNGLVDRVIELLEQMLE---HGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSA 391
Query: 152 RGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHK 194
G N ++ +L+ L + G +P +TFN +I +C G +
Sbjct: 392 CGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQ 451
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL M +G P S+ +I L +
Sbjct: 452 AIELLKQMLVNGCSPDLISYSTVIDGLGK 480
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G E+A E+L + +G PD+ +Y+ ++DG K G++ EA+ELLN I +G+T N +
Sbjct: 447 GLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIY 506
Query: 161 ---------------LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+IQ+ ++ + +N VI +LC + +A+ M
Sbjct: 507 SSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVS 566
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G +P+ +++ +LI+ L +
Sbjct: 567 NGCMPNESTYTILIRGLASE 586
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-----GVTQ 156
G E A ++L + + GLKP+V Y ++ G C R EA +LL E + VT
Sbjct: 272 GHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTF 331
Query: 157 NVVT-----------LIQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
N++ +I+LL Q LE G IP IT+ VI C G + +A++LL M
Sbjct: 332 NILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSA 391
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ S+ +++K L
Sbjct: 392 CGCKPNTISYTIVLKGL 408
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA +L N+ G KP+ +YT ++ G C+ R +A EL++ I++G N VT
Sbjct: 377 GLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTF 436
Query: 162 ----------------IQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I+LL Q L G P I+++ VI L GK +AL LL +M
Sbjct: 437 NTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMIN 496
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ + + L ++
Sbjct: 497 KGITPNTIIYSSMASALSRE 516
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 33/164 (20%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTA 128
F + AL +L+ + + + +L+V G V+E E+L + + G +PD+ +Y A
Sbjct: 159 FRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNA 218
Query: 129 IMDGFCKVGRSNEAMELLNEAI----------ERGVTQNV---VTLI------------- 162
++ G C R ++ EL+ E + E G T ++ T+I
Sbjct: 219 VLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVAN 278
Query: 163 QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+L R+ G P + +N V++ LC + +A LL M++
Sbjct: 279 DILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQE 322
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 33/180 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I+I+N++K DG N +V + ++ AL VGRV+EA ++ +K
Sbjct: 341 IEIWNAMKADGYNDNVVAYTAVVDALCQ----------------VGRVDEASDVFDQMKQ 384
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI-------------Q 163
G++P Y+Y +++ GF K R N A+EL N G T N T + +
Sbjct: 385 KGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLK 444
Query: 164 LLQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
++R E+ G +P + N V+ +L G++ A + + G P ++ M+IK
Sbjct: 445 AIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIK 504
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 99/206 (48%), Gaps = 35/206 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA---------LVMLNE-QDTAVK--FF 95
+K+ +E ++++ + DG SV ++ L++A + +L E +D VK +
Sbjct: 193 VKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRDVETVVWLLREMEDHGVKPNVY 252
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
S + + GR EEAY++L ++++G KPDV T T ++ C GR ++A ++ +
Sbjct: 253 SYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKM 312
Query: 150 IERGVTQNVVTLIQLLQR----------LEM-------GHIPRTITFNNVIQALCGVGKI 192
+ VT I LL + +E+ G+ + + V+ ALC VG++
Sbjct: 313 KASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRV 372
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+A + M + G P + S++ LI
Sbjct: 373 DEASDVFDQMKQKGIEPQQYSYNSLI 398
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 37/196 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------- 99
+K+ L E +D++ + +G + + + LL L+ + + A F L
Sbjct: 857 VKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNR 916
Query: 100 -----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ G E+ E+ N+ + G+ PD+ +YT ++ C GR N+++
Sbjct: 917 AIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFR- 975
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
Q E+G P IT+N +I L G++ +A+ L M + G
Sbjct: 976 -----------------QLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIA 1018
Query: 209 PSRTSHDMLIKKLDQQ 224
P+ +++ LI L ++
Sbjct: 1019 PNLYTYNSLILYLGKE 1034
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR EA+++ +K L P TY ++ G + G+ E M LL E + N
Sbjct: 544 AGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEE-----MNSN--- 595
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+ P IT+N V+ LC G+++ AL +L+ M G +P +S++ +
Sbjct: 596 ----------SYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHG 645
Query: 221 LDQQ 224
L ++
Sbjct: 646 LVKE 649
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
++ L+E + +FN ++K G ++ +N L++ L G+ EA
Sbjct: 998 RSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGK----------------EGKAAEAG 1041
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+M + +G KP+V+TY A++ G+ G ++ A + I G N T +QL +L
Sbjct: 1042 KMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQLPNQL 1101
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 72/187 (38%), Gaps = 36/187 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA E + F S+ G + +N L+ LV N D A FS
Sbjct: 756 KALEAHELVKKFESL---GVSLKTGSYNALICGLVDENLIDVAEGLFSE----------- 801
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLL 165
+K G PD +TY I+D K R + +++ E +G V T+I L
Sbjct: 802 -----MKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGL 856
Query: 166 QRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ +M G P T+ ++ L GKI A L M ++G P+R
Sbjct: 857 VKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNR 916
Query: 212 TSHDMLI 218
+++L+
Sbjct: 917 AIYNILL 923
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 16/161 (9%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
DL+ ++ T + F + M G + A L +K G+ + YTY ++ K
Sbjct: 136 DLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKS 195
Query: 137 GRSNEAMELLNEAIERGVT---------------QNVVTLIQLLQRLE-MGHIPRTITFN 180
G EAME+ G+ ++V T++ LL+ +E G P ++
Sbjct: 196 GYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRDVETVVWLLREMEDHGVKPNVYSYT 255
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I+ L G+ +A +L M + G P ++ +LI+ L
Sbjct: 256 ICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQIL 296
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 74/140 (52%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ + + G KP+V+TYT ++DG C+ G+ EA + + ++ G+ +V+T
Sbjct: 315 GLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITY 374
Query: 162 ----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+LL +E P TFN +++ LC VGK +KA+ LL M +
Sbjct: 375 NALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLD 434
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G P S+++LI L ++
Sbjct: 435 NGLSPDIVSYNVLIDGLCRE 454
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 34/158 (21%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K LKE + + I K G SV + L+ L+ G + ++
Sbjct: 558 KGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIR----------------SGDISGSF 601
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
ML +K G P+VY YT I++G C+ GR EA +LL+ + GV+ N VT +++
Sbjct: 602 RMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK-- 659
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
G++ NN GK+ +AL + M E G
Sbjct: 660 --GYV------NN--------GKLDRALETVRAMVERG 681
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + AY++L ++ + L+PD T+TAI++ FCK G+++ A L + +G++ +
Sbjct: 455 GHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLD---- 510
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+T +I +C VGK AL +L
Sbjct: 511 --------------EVTGTTLIDGVCNVGKTRDALFIL 534
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ +A +L + ++GL PD+ +Y ++DG C+ G N A +LL + N
Sbjct: 419 VGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLT-------SMNSFD 471
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L P +TF +I A C GK A L LM G
Sbjct: 472 L-----------EPDCLTFTAIINAFCKQGKADVASAFLGLMLRKG 506
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++E ML + GL P V TYT ++DG + G + + +L
Sbjct: 561 KLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLE--------------- 605
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
L +L G +P + +I LC G++ +A LL M + G P+ ++ +++K
Sbjct: 606 --LMKLS-GCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK 659
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
P+ +Y+ ++ G C+VGR EA L ++ E+G P T T+
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQ------------------PSTRTYT 305
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+I+ALC G I KA L M G P+ ++ +LI L
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGL 346
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 97 NHLMVGRVEEAYEMLM-NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
N L EA EM M + G D + T+++ GFC+ +A+++ + G
Sbjct: 203 NALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTC 262
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
P +++++ +I LC VG++ +A L M E G PS ++
Sbjct: 263 A-----------------PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYT 305
Query: 216 MLIKKL 221
+LIK L
Sbjct: 306 VLIKAL 311
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE-RGVTQ---- 156
G+ + A L + G+ D T T ++DG C VG++ +A+ +L ++ R +T
Sbjct: 490 GKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSL 549
Query: 157 NVV------------TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
NV+ L L + ++G +P +T+ ++ L G I + +L LM
Sbjct: 550 NVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKL 609
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G +P+ + ++I L Q
Sbjct: 610 SGCLPNVYPYTIIINGLCQ 628
>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rotundifolia]
Length = 425
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 158 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 201
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 261
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 318
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD +TYT ++DG CK G + A E I+ + + V
Sbjct: 290 GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + K LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQR 409
Query: 205 HGKIPSRTSHDMLI 218
+G PS ++++L+
Sbjct: 410 NGHAPSVVTYNVLM 423
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 137 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 196
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 197 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 256
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 257 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289
>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 87/221 (39%), Gaps = 57/221 (25%)
Query: 40 QAQRFVDKIKASPLKERIDIFN--------------------SIKKDGTNWSVSDFNDLL 79
+AQ + D + S + E I ++N I + G + ++ FN L+
Sbjct: 490 EAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLI 549
Query: 80 MALVMLNEQDTAVKFFSN--------------HLMVGRVEEA-----YEMLMNVKNDGLK 120
+ AVK LM G EE ++ML ++ +K
Sbjct: 550 YGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIK 609
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
P TYT ++ G CK GR +E+++LL RG+ P IT+N
Sbjct: 610 PTQITYTVVVKGLCKEGRLHESVQLLKYMYARGL------------------FPDQITYN 651
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
VIQ+ C + KA L M +H PS ++++LI L
Sbjct: 652 TVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGL 692
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA +V + ++ Y ++DG+ K+G EA+ + IE+G++
Sbjct: 486 GAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGIS------ 539
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +TFN++I C GK+ +A+ LL + HG +P+ ++ L+
Sbjct: 540 ------------PTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLM 584
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 33/168 (19%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
SV FN L+ + D A FF M +K GL PDVY+Y ++
Sbjct: 269 SVVSFNALMSGFCKMGSVDVAKSFFC---------------MMIKY-GLLPDVYSYNILL 312
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEM-GHI 173
G C G EA+E N+ GV ++VT +++QR+ + G
Sbjct: 313 HGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLN 372
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ +I C +G I ++ L M G S ++ +L+ L
Sbjct: 373 PDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSL 420
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 37/150 (24%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKF---FSNH----------------LMVGRVEEAYEMLM 112
V +N LL L + + A++F NH ++G + A++++
Sbjct: 305 VYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQ 364
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+ +GL PD+ TYT ++ G C++G E+ +L + + +G+ ++VT LL
Sbjct: 365 RMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLL------- 417
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+LC G+I +A++LL M
Sbjct: 418 -----------SSLCKSGRIDEAVILLHEM 436
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T H +G +EE++++ + + GLK + TYT ++ CK GR +EA+ LL+E
Sbjct: 377 TYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEM 436
Query: 150 IERGVTQNVVTL--------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKA 195
G+ +++T I+L + + I P + + +I L G I +A
Sbjct: 437 EVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEA 491
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 47 KIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV- 101
K+K L+ I +NS+ + W V +N++ + V NE ++N +++
Sbjct: 193 KMKVLNLQVSIATYNSLLYNLRHTDIMWDV--YNEIKASGVPQNE-------YTNPILID 243
Query: 102 -----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
R+++A L + P V ++ A+M GFCK+G + A I+ G+
Sbjct: 244 GLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGL-- 301
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
+P ++N ++ LC G + +AL M HG P ++++
Sbjct: 302 ----------------LPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNI 345
Query: 217 L 217
L
Sbjct: 346 L 346
>gi|242045394|ref|XP_002460568.1| hypothetical protein SORBIDRAFT_02g030880 [Sorghum bicolor]
gi|241923945|gb|EER97089.1| hypothetical protein SORBIDRAFT_02g030880 [Sorghum bicolor]
Length = 389
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 27/223 (12%)
Query: 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD 74
LL+D+ +RS A SL L RSL D RI + +K + +
Sbjct: 157 LLIDAAARSGHVAVSLSLFHRLRSLHVSPDADTY-------RILTQSLCRKAQVRTAATL 209
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
+++L + A N L + + EAY +L ++ G+ PD+ Y ++ G
Sbjct: 210 LDEMLHRGI--PADPLAYTTVLNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGM 267
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-----------------GHIPRT 176
C+ GR +A +++ + +E G T N VT ++ L + G +P
Sbjct: 268 CREGRPLDACKVVGDMMESGCTPNAVTYATVVNGLCVSGLYDKAETYLVDMVGKGLVPHF 327
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
F++VI+ C VGK+ +A ++ M + G +P S +I+
Sbjct: 328 SVFHSVIKGCCTVGKVEEAAQIMSWMLDLGVVPHVESWSSVIR 370
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V + + +++ + PD TY + C+ + A LL+E + RG+ + +
Sbjct: 166 GHVAVSLSLFHRLRSLHVSPDADTYRILTQSLCRKAQVRTAATLLDEMLHRGIPADPLAY 225
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L L G P + +N VI +C G+ A ++ M E
Sbjct: 226 TTVLNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGMCREGRPLDACKVVGDMME 285
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ ++ ++ L
Sbjct: 286 SGCTPNAVTYATVVNGL 302
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 23/133 (17%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N LM G V EA ++ + G KPDV++Y+ +++G+CK R +EA +L NE I
Sbjct: 224 NSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIH 283
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+G T P +++N +I LC +G++ +A L M+ +G +P+
Sbjct: 284 QGST------------------PNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNL 325
Query: 212 TSHDMLIKKLDQQ 224
++ +L+ +Q
Sbjct: 326 YTYAILLDGFCKQ 338
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ +A E+ ++ G +PD YTYT I++G CK+G + A L + E G NVVT
Sbjct: 58 VGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVT 117
Query: 161 LIQLLQRL-------EMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E I P T+ ++IQ LC + +A LL M
Sbjct: 118 YSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMT 177
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+P+ + ++L+ ++
Sbjct: 178 SLNIMPNVVTFNVLVDTFCKE 198
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + E +FN + G+ + +N L+ L L GR+ EA
Sbjct: 267 KAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQL----------------GRLREAQ 310
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
++ N+ +G P++YTY ++DGFCK G +A L + N+V L+
Sbjct: 311 DLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAM 370
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ +G P + +I LC G + +AL M + G P
Sbjct: 371 CKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDE 430
Query: 212 TSHDMLIKKLDQQ 224
S++++I+ Q
Sbjct: 431 FSYNVIIRGFLQH 443
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 33/192 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E +DIF+ +K + ++ + L+ L + R +EA
Sbjct: 127 KYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFS----------------RWKEAS 170
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+L + + + P+V T+ ++D FCK G+ A +L E GV +VVT L+
Sbjct: 171 ALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGY 230
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
M G P +++ +I C +I +A L M G P+
Sbjct: 231 SMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNN 290
Query: 212 TSHDMLIKKLDQ 223
S++ LI L Q
Sbjct: 291 VSYNTLIHGLCQ 302
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV+ + +L GL+P + T+T +++G KVG+ +A+EL ++ + RG + T
Sbjct: 25 RVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYT 84
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++ L E G +T++ +I +LC ++++AL + M
Sbjct: 85 TIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAK 144
Query: 206 GKIPSRTSHDMLIKKL 221
P+ ++ LI+ L
Sbjct: 145 DISPTIFTYTSLIQGL 160
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL----------QR 167
GL P+ T +++ FC++ R + +L + I+ G+ +VT L+ Q
Sbjct: 5 GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64
Query: 168 LEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+E+ G P T+ +I LC +G+ A L M E G + ++ LI
Sbjct: 65 VELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHS 124
Query: 221 L 221
L
Sbjct: 125 L 125
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++EA E N+++DG PD ++Y I+ GF + + A+ L+ E +RG + T
Sbjct: 409 GLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 34/213 (15%)
Query: 27 AESLDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
++ ++ K NP +D +K L E +++ + K + S+ ++ L+ M
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
+ R++EA +M + + PDV TY ++ GFCK R E ME+
Sbjct: 375 D----------------RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 418
Query: 146 LNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCG 188
E +RG+ N VT L+Q L EM G P +T+N ++ LC
Sbjct: 419 FREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 478
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
GK+ KA+++ + P+ +++++I+ +
Sbjct: 479 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 511
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + PDV+T++A++D F K G+ EA +L +E ++R + ++VT
Sbjct: 305 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ M P +T+N +I+ C ++ + + + M +
Sbjct: 365 SSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ 424
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + ++++LI+ L Q
Sbjct: 425 RGLVGNTVTYNILIQGLFQ 443
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 77/190 (40%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN--------HLM 100
K ++E +++F + + G + +N L+ L + D A + F ++M
Sbjct: 408 KYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIM 467
Query: 101 V-----------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G++E+A + ++ ++P +YTY +++G CK G+ + +L
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 527
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+GV P + +N +I C G +A L M E G +P
Sbjct: 528 SLKGVK------------------PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569
Query: 210 SRTSHDMLIK 219
+ ++ LI+
Sbjct: 570 NSGCYNTLIR 579
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L + + +F + K S+ +F+ LL A+ +N+ D +
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQ--------------- 106
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------- 165
++N G+ + YTY+ +++ FC+ + A+ +L + ++ G N+VTL LL
Sbjct: 107 -MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165
Query: 166 ----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q G+ P T+TFN +I L K +A+ L+ M G P ++
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225
Query: 216 MLIKKLDQQ 224
+++ L ++
Sbjct: 226 VVVNGLCKR 234
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A+ +L ++ L+P V Y I+DG CK ++A+ L E +G+ NVVT
Sbjct: 235 GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294
Query: 162 IQLL------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL I R I TF+ +I A GK+ +A L M +
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354
Query: 205 HGKIPSRTSHDMLI 218
PS ++ LI
Sbjct: 355 RSIDPSIVTYSSLI 368
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 17/110 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE+A+ + +K+ G+ PDVYTYT ++D FCKVG +A +E G + +VVT
Sbjct: 470 KVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYT 529
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
LL + ++ G P TIT++ ++ LC G+ KA
Sbjct: 530 ALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKA 579
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V +A E+L + ++G +P+ Y A++DGFCKVG+ + A E+ + G V T
Sbjct: 626 KVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYT 685
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ Q LE P +T+ +I LC +G+ KAL LL +M +
Sbjct: 686 SLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKR 745
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G P+ ++ LI L +
Sbjct: 746 GCNPNVVTYTSLIDGLGK 763
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 33/169 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K L ++F + K G +V + L+ A+ D A+K S L
Sbjct: 657 CKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQML-------- 708
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
P+V TYTA++DG C++G +A++LL+ +RG NVVT L+
Sbjct: 709 --------ESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDG 760
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
Q + G P +T+ +I C G + +A LL
Sbjct: 761 LGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLL 809
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T +L +V +A ++ + + G P+ TY+A++DG CK G S +A E+ +
Sbjct: 527 TYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKM 586
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
I G + NV + P +T+ +I LC K+ A LL +M +G P
Sbjct: 587 I--GTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEP 644
Query: 210 SRTSHDMLI 218
+ +D LI
Sbjct: 645 NHIIYDALI 653
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
+L +++ G+ Y ++D F K GR +A+EL E +E + N+ +
Sbjct: 841 LLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITS--------- 891
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ ++IQALC ++ KA L + G +P ++ LIK L
Sbjct: 892 ------KDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGL 937
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 35/70 (50%)
Query: 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
+ +DT + ++E+A+E+ + G+ P++ + ++ G KV + NEA++
Sbjct: 889 ITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQ 948
Query: 145 LLNEAIERGV 154
L + GV
Sbjct: 949 LCYSMCDEGV 958
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------------- 148
G+V+ + ++ + G P+ TY +++ C G +EA LL+E
Sbjct: 765 GKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGY 824
Query: 149 -AIERGVTQNVVTLIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ +G ++ + + LL+ LE G + + +I + G++ KAL L M E
Sbjct: 825 CSVVQGFSKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVS 884
Query: 207 K---IPSRTSHDMLIKKL 221
I S+ ++ LI+ L
Sbjct: 885 SSLNITSKDTYTSLIQAL 902
>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hermannioides]
Length = 417
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 150 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 193
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-RLEMGHI---- 173
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+ R + G +
Sbjct: 194 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAM 253
Query: 174 ------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 254 EIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 310
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD +TYT ++DG CK G + A E I+ + + V
Sbjct: 282 GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 341
Query: 162 IQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM + P T T+ +I C G + K LL M
Sbjct: 342 TALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 401
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 402 DGHAPSVVTYNVLM 415
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 129 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 188
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G IP +TF +I C G+
Sbjct: 189 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGR 248
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 249 VDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKK 281
>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 465
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 32/212 (15%)
Query: 27 AESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
A+ L + NP ++ F IK LK +I +F+D L+AL
Sbjct: 146 AKILKMGYNPNTIT---FTTLIKGLCLKGQI------------HQALNFHDKLVALGFQF 190
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
Q + VG A ++L V ++P+V Y+ I+DG CK N+A +L
Sbjct: 191 NQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLY 250
Query: 147 NEAIERGVTQNVVTLIQLLQR-LEMGHI----------------PRTITFNNVIQALCGV 189
+E + +G++ NVVT L+ +G + P TFN ++ C
Sbjct: 251 SEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKS 310
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
GKI AL L+ M++ G+ P+ ++ ++ L
Sbjct: 311 GKISYALKLVDEMHDRGQPPNIVTYSSILDAL 342
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 70/126 (55%), Gaps = 18/126 (14%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S VG++++A ++ + ++ +KPDVYT+ ++D FCK G+ + A++L++E +RG
Sbjct: 270 SGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQP 329
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
N+V T+++++ ALC ++ KA+ LL + + G P+ ++
Sbjct: 330 PNIV------------------TYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYT 371
Query: 216 MLIKKL 221
+LI L
Sbjct: 372 ILIDGL 377
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 37/184 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLL----------MALVMLNE-----QDTAVKFFSN 97
LK+ +D+FN + + V FN L+ AL +++E Q + +S+
Sbjct: 278 LKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSS 337
Query: 98 HL----MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L RV++A +L +K+ G++P+++TYT ++DG C G+ +A + + + +G
Sbjct: 338 ILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKG 397
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
VVT I + C G +A LL M E+G IP +
Sbjct: 398 YDITVVTYIVMF------------------YGFCKKGLFDEASALLSKMEENGCIPDAKT 439
Query: 214 HDML 217
++++
Sbjct: 440 YELI 443
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 22/106 (20%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G+KP++ +++ FC++G A + + L+MG+ P TI
Sbjct: 117 GIKPNLVNCNILINCFCQLGLIPFAFSVFAKI------------------LKMGYNPNTI 158
Query: 178 TFNNVIQALCGVGKIHKAL----LLLFLMYEHGKIPSRTSHDMLIK 219
TF +I+ LC G+IH+AL L+ L ++ +I T D L K
Sbjct: 159 TFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCK 204
>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 20/140 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA ++ + +G +PDV TY +++G CK + EA+ L ++ + +G++ N T
Sbjct: 94 GKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTY 153
Query: 162 IQLLQRLE-MGH----------------IPRTITFNNVIQALCGVGKIH---KALLLLFL 201
L+ L +GH +P +TFN ++ ALC G I KA+ L
Sbjct: 154 SSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEE 213
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M + G IP +++ LI L
Sbjct: 214 MSQQGLIPDTVTYNTLIHGL 233
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 83/190 (43%), Gaps = 36/190 (18%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFF-------------------SNHLMVGRVEEAYEML 111
S+ DF+ LL ++ + T + + ++ + R+ A+ +L
Sbjct: 9 SIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVL 68
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLI------ 162
++ G +P T+T ++ G C G+ EA++L ++ G +V+ TLI
Sbjct: 69 GDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKD 128
Query: 163 -QLLQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
QL + L + G P T++++I LC +G +A+ L + M +P + +
Sbjct: 129 RQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTF 188
Query: 215 DMLIKKLDQQ 224
+ L+ L ++
Sbjct: 189 NTLVDALCKE 198
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 82/215 (38%), Gaps = 39/215 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL--------- 99
K L E + +F+ + G + + ++ L+ L +L A++ F +
Sbjct: 127 KDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQL 186
Query: 100 -------------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
M+ +++A + + GL PD TY ++ G C VGR +A+ L
Sbjct: 187 TFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALF 246
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHI-----------------PRTITFNNVIQALCGV 189
+E + G ++VT L L H P ++ V+ +C
Sbjct: 247 HEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRA 306
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G++ A L + G P ++ ++I L QQ
Sbjct: 307 GELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQ 341
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
G +E A ++ + + GL PDV TYT +++G C+ G EA +L E E +
Sbjct: 307 GELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENDI 359
>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
mitochondrial [Vitis vinifera]
Length = 876
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G ++A +ML + P+V+TYT ++D C+ G+ EA + + ++ G+ ++T
Sbjct: 290 IGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIIT 349
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
QLL +E G+ P T+N +++ LC V K +KA LLL +
Sbjct: 350 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVV 409
Query: 204 EHGKIPSRTSHDMLI 218
++G +P R ++++L+
Sbjct: 410 DNGLLPDRVTYNILV 424
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ A+ + ++ + GL+PD +T+TA++DG CK+GR +A +L +++G++ + VT
Sbjct: 431 GQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTF 490
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ +E + TFN + AL K+++A +L M +
Sbjct: 491 TALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMK 550
Query: 205 HGKIPSRTSHDMLIK 219
+G +PS +H +LI+
Sbjct: 551 YGLVPSVVTHTILIE 565
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA+++ + G +P TYT ++ C +G +++AM++L+E + NV T
Sbjct: 256 GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTY 315
Query: 162 IQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ R L+ G P ITFN +I C G + A LL +M +
Sbjct: 316 TILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 375
Query: 205 HGKIPSRTSHDMLIKKL 221
P+ +++ L++ L
Sbjct: 376 GNCKPNIRTYNELMEGL 392
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 28/153 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG--RVEEAYE---MLMN 113
+ N K+G W VS F L++++ ++ + N LM G RV ++Y+ +L
Sbjct: 353 LINGYCKEG--WVVSAFQ--LLSVMEKGNCKPNIRTY-NELMEGLCRVSKSYKAFLLLRR 407
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
V ++GL PD TY ++DGFCK G+ N A + N G+
Sbjct: 408 VVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLE------------------ 449
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
P TF +I LC +G++ +A +L M + G
Sbjct: 450 PDGFTFTALIDGLCKLGRLEQANGILGSMVKKG 482
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
K + +P+ TY+ ++ G C+ GR EA +L E +E+G P
Sbjct: 234 KEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQ------------------P 275
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
T T+ +I+A C +G KA+ +L M +P+ ++ +LI +L ++
Sbjct: 276 STRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCRE 325
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H G + +ML +K G P+VYTYT I++G C GR EA +L GV+
Sbjct: 566 GHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVS- 624
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P T+ +++A G++ +A ++ M ++G P+ +
Sbjct: 625 -----------------PNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSA 667
Query: 217 LI 218
L+
Sbjct: 668 LL 669
>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
Length = 556
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 34/210 (16%)
Query: 27 AESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
E ++ NP +D + + E +FN + K G + FN L+
Sbjct: 283 CEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLI------ 336
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
S H + G V EA ++ V G+ PDV++YT ++ G+CK R +EA+ L
Sbjct: 337 ----------SGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSL 386
Query: 146 LNEAIERGVTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCG 188
NE + + ++V L+ L + G I P IT+N +I A C
Sbjct: 387 FNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCK 446
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ I + L LM G P+ ++++LI
Sbjct: 447 IQDIDMGIELFKLMCGKGLTPTVLTYNILI 476
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 17/162 (10%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
DF+D + A ML ++ + +GR +A+++L ++ +KP++ Y I+D F
Sbjct: 175 DFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSF 234
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----EMGHI-------------PRT 176
CK + +A +L + ++ G+ +++T L++ + G + P
Sbjct: 235 CKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNV 294
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN +I A C GK+ +A + LM + G+ P + + LI
Sbjct: 295 YTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLI 336
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 34/170 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K+ + ++F++I DG +V +N L+ A + + D ++ F LM G+
Sbjct: 411 KSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFK--LMCGK----- 463
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
GL P V TY +++G+CK R EAM LL+ + +
Sbjct: 464 ---------GLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLA------------- 501
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +IT+N++ LC G+I A L +M+ G ++++L+
Sbjct: 502 -----PDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLL 546
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++A + NV G+ D Y +++G CK+GRS +A +LL E + V N+V
Sbjct: 168 GEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIY 227
Query: 162 IQL-----------------LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L+ ++MG P +T+ ++I+ C G+ + L+ M
Sbjct: 228 NMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVN 287
Query: 205 HGKIPSRTSHDMLI 218
P+ + ++LI
Sbjct: 288 KNINPNVYTFNVLI 301
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 17/129 (13%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A +L + G+ P ++T + ++ +C +G A +L ++RG N +TL +++
Sbjct: 103 AISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMK 162
Query: 167 RLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
L + G + + + +I LC +G+ A LL M P
Sbjct: 163 GLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKP 222
Query: 210 SRTSHDMLI 218
+ ++M+I
Sbjct: 223 NIVIYNMII 231
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1164
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S +G + EA ++ + GL+PD+ T+T +M+G+CK G +A + N
Sbjct: 811 TYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHM 870
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
I+ G + NVVT L+ L ++G P T+N+++ LC G I
Sbjct: 871 IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNI 930
Query: 193 HKALLLL 199
+A+ L+
Sbjct: 931 EEAVKLV 937
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A + + + + PDV TYTAI+ GFC++G EA +L +E + RG+ +++T
Sbjct: 788 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITF 847
Query: 162 IQLLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L+ + GHI P +T+ +I LC G + A LL M++
Sbjct: 848 TELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 907
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ ++ L
Sbjct: 908 IGLQPNIFTYNSIVNGL 924
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 33/184 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I +F + G W+V+ +N ++ + L GR+ EA+ +L+ ++
Sbjct: 654 IIVFREFPEVGVCWNVASYNIVIHFVCQL----------------GRINEAHHLLLLMEL 697
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQRL----- 168
G PDV +Y+ +++G+C+ G ++ +L+ + ++G+ N T +I LL R+
Sbjct: 698 KGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAE 757
Query: 169 ------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
EM G +P TI + ++ C G I A + M+ P ++ +I
Sbjct: 758 AEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIIS 817
Query: 220 KLDQ 223
Q
Sbjct: 818 GFCQ 821
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA +++ + GL D TYT +MD +CK G ++A E+L E + +G+
Sbjct: 928 GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQ------ 981
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +TFN ++ C G + LL M G P+ T+ + L+K+
Sbjct: 982 ------------PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQ 1028
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 35/175 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-----------------NHL 99
+D+F + + GT S+ N L +LV NE + + F N L
Sbjct: 171 VDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVINAL 230
Query: 100 MVG-RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
G ++E A E+ M ++ G+ P+V TY I++G C+ GR + A EL + +GV N+
Sbjct: 231 CKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNL 290
Query: 159 VTLIQLLQRL-------EMGHI----------PRTITFNNVIQALCGVGKIHKAL 196
T L+ L ++ HI P + FNN+I C +G I AL
Sbjct: 291 KTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGAL 345
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 25/200 (12%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWS--VSD----FNDLLMALVMLNEQDTAVKF 94
A + D+ KAS L I + I +G + + D FN+LL + LN +
Sbjct: 554 AIKLWDEFKASGLISNIHTY-GIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNI-I 611
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
H G V A ++L N+K+ G+ P+ TY++++ G C +G +A L++E + G
Sbjct: 612 IKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGF 671
Query: 155 TQNVVTLIQLL-QRLEMGHI----------------PRTITFNNVIQALCGVGKIHKALL 197
NVV L+ ++G + P T+ +I C +G + KA
Sbjct: 672 VPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANN 731
Query: 198 LLFLMYEHGKIPSRTSHDML 217
LL M E G +P ++++L
Sbjct: 732 LLIKMKESGIVPDVVTYNVL 751
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------ 154
VG++++A ++ K GL +++TY +M+G+CK R + L NE + + +
Sbjct: 548 VGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIV 607
Query: 155 ----------TQNVVTLIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
NV +QLL+ ++ G +P T++++I +C +G + A L+ M
Sbjct: 608 YNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMR 667
Query: 204 EHGKIPSRTSHDMLI 218
+ G +P+ + LI
Sbjct: 668 KEGFVPNVVCYTALI 682
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 25/138 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE + + + G++PD+YTY ++ G C VG+ ++A++L +E G+ N+ T
Sbjct: 514 GKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTY 573
Query: 162 IQLLQ---------------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+++ ++E+ +I +N +I+A C G + AL LL
Sbjct: 574 GIMMEGYCKANRIEDVENLFNELLSKKMEL----NSIVYNIIIKAHCQNGNVAAALQLLE 629
Query: 201 LMYEHGKIPSRTSHDMLI 218
M G +P+ ++ LI
Sbjct: 630 NMKSKGILPNCATYSSLI 647
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 23/139 (16%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-------VKF------FSNHLMV---- 101
+ + ++K+G +V + L+ L + DTA + F F+ +M+
Sbjct: 662 LIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYC 721
Query: 102 --GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G +E+A +L+ +K G+ PDV TY + +GFCK + A ++ ++ G+ + +
Sbjct: 722 KLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEI 781
Query: 160 TLIQLLQRLEMGHIPRTIT 178
T L+ G P TIT
Sbjct: 782 TYTTLVH----GWNPPTIT 796
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 23/120 (19%)
Query: 84 MLNEQDTAVKFFSNHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
+L + A K SN L+ G++ EA ++ + GL D TY A++ GFC G+
Sbjct: 456 LLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGK 515
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
L E +RG+ P T+N +++ LC VGK+ A+ L
Sbjct: 516 VEGCFRLREEMTKRGIQ------------------PDIYTYNFLLRGLCNVGKLDDAIKL 557
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 21/138 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE--- 105
K ++ I++F ++K G + +V +N ++ L D A + + V V+
Sbjct: 232 KGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFEL-KEKMTVKGVQPNL 290
Query: 106 EAYEMLMN-----------------VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ Y L+N + G P+V + ++DG+CK+G A+++ +
Sbjct: 291 KTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDV 350
Query: 149 AIERGVTQNVVTLIQLLQ 166
I + +T VTL L+Q
Sbjct: 351 MISKNITPTSVTLYSLMQ 368
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R A+ + + +P T ++ G CK G+ EA EL
Sbjct: 410 RYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELW---------------- 453
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ LE G +T N +I LCG GK+ +A ++ M E G R +++ LI
Sbjct: 454 --FRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALI 507
>gi|302810233|ref|XP_002986808.1| hypothetical protein SELMODRAFT_41291 [Selaginella moellendorffii]
gi|300145462|gb|EFJ12138.1| hypothetical protein SELMODRAFT_41291 [Selaginella moellendorffii]
Length = 587
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 35/191 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
++ L ++I+ ++ G S FN L+ L D A
Sbjct: 112 CRSGRLDTCVEIYQEMRSRGFRVSHLAFNSLVCGLCKAGRTDEAWDVLGKSRPSACADAV 171
Query: 97 ------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
+ L + A E++ ++ + P+V TYT+++DG CK GR + AM LL +
Sbjct: 172 TLSTVIHALCSSDCDRALELMRAMQAQRVPPNVVTYTSVIDGLCKAGRRDAAMVLLQQMQ 231
Query: 151 ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
G + P T+T+N +I +LC GK+ A LL M G PS
Sbjct: 232 AAGCS------------------PNTVTYNCLIHSLCKAGKLEDAFALLRSMPSKGCTPS 273
Query: 211 RTSHDMLIKKL 221
+ + L+ +
Sbjct: 274 INNKNTLVSGI 284
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 32/209 (15%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
KA + E ++ ++ K +N L L+ LN A + FS
Sbjct: 351 CKADKVLEAARVWRAMVKRLGQADAVTYNSFLYGLLKLNNLSEAARLFSEIDKPTLVSYS 410
Query: 98 -----HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
+ G + + E+ GL+PD+ Y ++ G + L E +
Sbjct: 411 LLVHAYFKAGDLSKVEEVYQAATGQGLRPDLALYNIVLHGLSGAKQEAGVAHLWAEMLNN 470
Query: 153 GVTQNVVTLIQLLQ------RLE-----------MGHIPRTITFNNVIQALCGVGKIHKA 195
GV+ +V T L+ RL+ G +P IT+N ++ LC + +A
Sbjct: 471 GVSPSVATYTILIHALCRDNRLQAARQIIDKMKGQGVLPDAITYNTLLHCLCKNELLDEA 530
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LLL M +H T + ++ L+Q+
Sbjct: 531 HLLLREMKQHCSYTPATWNIVIDGILEQR 559
>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 418
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 41/192 (21%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ + ++ G++PDVYTY+ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID- 249
Query: 168 LEMGHI---------------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
GH P IT+N +I LC G + +A L+ M G
Sbjct: 250 ---GHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306
Query: 207 KIPSRTSHDMLI 218
P + ++ LI
Sbjct: 307 LKPDKITYTTLI 318
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYMPS 415
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418
>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
Length = 833
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G ++A +ML + P+V+TYT ++D C+ G+ EA + + ++ G+ ++T
Sbjct: 247 IGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIIT 306
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
QLL +E G+ P T+N +++ LC V K +KA LLL +
Sbjct: 307 FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVV 366
Query: 204 EHGKIPSRTSHDMLI 218
++G +P R ++++L+
Sbjct: 367 DNGLLPDRVTYNILV 381
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ A+ + ++ + GL+PD +T+TA++DG CK+GR +A +L +++G++ + VT
Sbjct: 388 GQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTF 447
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ +E + TFN + AL K+++A +L M +
Sbjct: 448 TALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMK 507
Query: 205 HGKIPSRTSHDMLIK 219
+G +PS +H +LI+
Sbjct: 508 YGLVPSVVTHTILIE 522
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA+++ + G +P TYT ++ C +G +++AM++L+E + NV T
Sbjct: 213 GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTY 272
Query: 162 IQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ R L+ G P ITFN +I C G + A LL +M +
Sbjct: 273 TILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 332
Query: 205 HGKIPSRTSHDMLIKKL 221
P+ +++ L++ L
Sbjct: 333 GNCKPNIRTYNELMEGL 349
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 28/153 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG--RVEEAYE---MLMN 113
+ N K+G W VS F L++++ ++ + N LM G RV ++Y+ +L
Sbjct: 310 LINGYCKEG--WVVSAFQ--LLSVMEKGNCKPNIRTY-NELMEGLCRVSKSYKAFLLLRR 364
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
V ++GL PD TY ++DGFCK G+ N A + N G+
Sbjct: 365 VVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLE------------------ 406
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
P TF +I LC +G++ +A +L M + G
Sbjct: 407 PDGFTFTALIDGLCKLGRLEQANGILGSMVKKG 439
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
K + +P+ TY+ ++ G C+ GR EA +L E +E+G P
Sbjct: 191 KEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQ------------------P 232
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
T T+ +I+A C +G KA+ +L M +P+ ++ +LI +L ++
Sbjct: 233 STRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCRE 282
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 67 GTNWSVSDFNDLL---MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123
G ++ +++ N +L M ++ T H G + +ML +K G P+V
Sbjct: 490 GKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNV 549
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI 183
YTYT I++G C GR EA +L GV+ P T+ ++
Sbjct: 550 YTYTIIINGLCNNGRVEEAETILFSMSSFGVS------------------PNHFTYAVLV 591
Query: 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+A G++ +A ++ M ++G P+ + L+
Sbjct: 592 KAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALL 626
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++AY + M + +DGL+PD TYT ++ C+ GR EA ++ + + G+ + VT
Sbjct: 526 GNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTY 585
Query: 162 IQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ LE G P +T+N +I ALC +G+ + A M E
Sbjct: 586 TVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLE 645
Query: 205 HGKIPSRTSHDMLI 218
G P++ ++ +LI
Sbjct: 646 RGLSPNKYTYTLLI 659
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H GR+ EA ++ + GL P TYT + +C+ G A + +E GV N
Sbjct: 557 HCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPN 616
Query: 158 VVT---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
VT LI L R LE G P T+ +I C G +A+ L
Sbjct: 617 EVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYS 676
Query: 201 LMYEHGKIPSRTSHDMLIKKLDQ 223
M++HG P +H+ L K D+
Sbjct: 677 EMHQHGIHPDHCTHNALFKGFDE 699
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S L++G EA+++ + + G+ D TY +DG CK G +A L + + G+
Sbjct: 485 SAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQ 544
Query: 156 QNVVTLIQLLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLL 198
+ +T L+ E G + P +T+ I A C G ++ A
Sbjct: 545 PDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGW 604
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
M E G P+ ++++LI L
Sbjct: 605 FQKMLEEGVRPNEVTYNVLIHAL 627
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 17/160 (10%)
Query: 79 LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
+ A+ +L + T + + G ++EA + ++K GL P V TY ++DG+C++G
Sbjct: 363 MRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGD 422
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNN 181
EA E +E+G +V T L+ + L G P +N
Sbjct: 423 LEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNT 482
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I A +G +A L +M G ++++ + L
Sbjct: 483 RISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGL 522
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 20/151 (13%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL------------- 99
L+E DIF+ + G S + + A +A +F L
Sbjct: 563 LREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNV 622
Query: 100 ------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+GR AY+ + GL P+ YTYT ++DG CK G EA+ L +E + G
Sbjct: 623 LIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHG 682
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITF-NNVI 183
+ + T L + + G I + NV+
Sbjct: 683 IHPDHCTHNALFKGFDEGQSKHAIQYMENVV 713
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 85 LNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141
++++ +A F + + G VE+A + + ++N+G+ P V TY I+ G + G
Sbjct: 296 MSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEA 355
Query: 142 AMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
A ++ ++ MG +P IT+N++I C G + +AL L
Sbjct: 356 AR------------------MKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGD 397
Query: 202 MYEHGKIPSRTSHDMLI 218
+ G PS ++++L+
Sbjct: 398 LKRAGLAPSVLTYNILL 414
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-------GVTQNVV----------- 159
G++P + TY ++D F + GR ++A +LL E R VT NVV
Sbjct: 226 GIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELE 285
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
QL+ R+ M TFN +I G + KA L M G +P+ +++ +I
Sbjct: 286 KAAQLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIH 345
Query: 220 KL 221
+
Sbjct: 346 GM 347
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE A + ++ GL PD+ TY ++++G+CK G EA+ L +
Sbjct: 351 GNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGD------------- 397
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L+R G P +T+N ++ C +G + +A M E G P +++ +L+
Sbjct: 398 ---LKR--AGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILM 449
>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
Length = 709
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 17/104 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-----GVT 155
+G +++A +M+ ++ +G KP+ T+TA+++G CKVG+S+EA ELLN++ E G+T
Sbjct: 387 IGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGIT 446
Query: 156 QNVV--------TLIQ----LLQRLEMGHIPRTITFNNVIQALC 187
+V+ L++ ++Q L+ G P + N +I ALC
Sbjct: 447 YSVIMHGFRREGKLVESCDVVMQMLQKGFFPTAVEINLLIHALC 490
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 19/143 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA E++ + + G +PDV TY+A++DGFC++G ++A +++ + G N VT
Sbjct: 353 GRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTH 412
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L E P IT++ ++ GK+ ++ ++ M +
Sbjct: 413 TALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVVMQMLQ 472
Query: 205 HGKIPSRTSHDMLIKKL--DQQP 225
G P+ ++LI L +Q+P
Sbjct: 473 KGFFPTAVEINLLIHALCKEQKP 495
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EA L + + D Y+AI+ FC GR +EA E++ E I +G
Sbjct: 318 GHADEALTFLRESEGKRFRVDQVGYSAIVHSFCLNGRMSEAKEIIGEMISKGCR------ 371
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T++ V+ C +G++ +A ++ MY++G P+ +H L+ L
Sbjct: 372 ------------PDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGL 419
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
GRV++A E ++ G+ PDV TY ++ G C R EA+E++ ++ G
Sbjct: 212 GRVDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKISY 271
Query: 155 ---------TQNVVTLIQLLQRL--EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+ V + LL+R+ + G P IT+N +I L G +AL L
Sbjct: 272 FTVMSFLCKEKRVAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFL 327
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 23/122 (18%)
Query: 98 HLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
HLM+ G++ A +L ++ DG PD+ ++ GR ++A+E
Sbjct: 168 HLMLSYSRAGKLRSAMRVLQLMQKDGCAPDICICNVAVNVLVVAGRVDKALEFAERMRRV 227
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
GV P +T+N +I+ LCG +I +AL ++ M ++G P +
Sbjct: 228 GVD------------------PDVVTYNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKI 269
Query: 213 SH 214
S+
Sbjct: 270 SY 271
>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
Length = 735
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 17/104 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G +++A +M+ ++ +G KP+ T+TA+++G CKVG+S+EA ELLN++ E T + +T
Sbjct: 384 IGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAIT 443
Query: 161 LI-----------------QLLQRLEMGHIPRTITFNNVIQALC 187
++Q L+ G P T+ N +I ALC
Sbjct: 444 YSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTVEINLLIHALC 487
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA E++ + + G +PDV TY+A++DGFC++G ++A +++ + G N VT
Sbjct: 350 GRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTH 409
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L E P IT++ V+ GK+ ++ ++ M +
Sbjct: 410 TALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQ 469
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ ++LI L
Sbjct: 470 KGFFPTTVEINLLIHAL 486
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 34/176 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L+ + + ++KDG + N MA+ +L ++ GR+++A
Sbjct: 173 RAGKLRSAMRVLQLMQKDGCAPDICICN---MAVNVL-------------VVAGRIDKAL 216
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E ++ G+ PDV TY ++ G C R +A+E+++ ++ G
Sbjct: 217 EFAERMRRVGVDPDVVTYNCLIKGLCGARRIVDALEMISSMLQNGC-------------- 262
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+P I++ V+ LC ++ LL M + G P + +++MLI L +
Sbjct: 263 ----LPDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIFPDQVTYNMLIHGLAKH 314
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EA L + + D Y+A + FC GR EA E++ E I +G
Sbjct: 315 GHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEIIGEMISKGCR------ 368
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T++ V+ C +G++ +A ++ MY++G P+ +H L+ L
Sbjct: 369 ------------PDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGL 416
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 23/122 (18%)
Query: 98 HLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
HLM+ G++ A +L ++ DG PD+ ++ GR ++A+E
Sbjct: 166 HLMLSYSRAGKLRSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRV 225
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
GV P +T+N +I+ LCG +I AL ++ M ++G +P +
Sbjct: 226 GVD------------------PDVVTYNCLIKGLCGARRIVDALEMISSMLQNGCLPDKI 267
Query: 213 SH 214
S+
Sbjct: 268 SY 269
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KAS ++ + + + ++ G + +N L+ A M NE G V+EA
Sbjct: 208 CKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINA--MCNE--------------GDVDEA 251
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+L ++ + G KPD TYT ++ C R E EL E + VT ++
Sbjct: 252 LNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTS 311
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L E G IP +T+++++ LC VG++ A+ LL + +G P
Sbjct: 312 LCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPD 371
Query: 211 RTSHDMLIKKL 221
++ ++K L
Sbjct: 372 TIAYTTVLKGL 382
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A +++ ++ G PD+ TY++I+DG C VGR ++A+ELL+ G + +
Sbjct: 316 GLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 375
Query: 162 IQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L+ L + H P +TFN VI +LC G + +A+ ++ M E
Sbjct: 376 TTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSE 435
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P +++ +I L
Sbjct: 436 NGCNPDIVTYNSIIDGL 452
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 21/140 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI---------- 150
VGRV++A E+L +K+ G KPD YT ++ G C + + A EL+ E +
Sbjct: 350 VGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVT 409
Query: 151 ---------ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
++G+ + +++ Q E G P +T+N++I LC I A+ LL
Sbjct: 410 FNTVIASLCQKGLVDRAIKVVE--QMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSN 467
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
+ +G P + + L+K L
Sbjct: 468 LQSYGCKPDIVTFNTLLKGL 487
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 34/165 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I + + ++G N + +N ++ L NE+ +++A E+L N+++
Sbjct: 427 IKVVEQMSENGCNPDIVTYNSIIDGLC--NER--------------CIDDAMELLSNLQS 470
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G KPD+ T+ ++ G C V R +A +L ++ + P
Sbjct: 471 YGCKPDIVTFNTLLKGLCSVDRWEDAEQL------------------MVNMMHSDCPPDA 512
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TFN VI +LC G + +A+ L +M E+G IP+++++++++ L
Sbjct: 513 TTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDAL 557
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A + ++ + G P V TY+ ++D CK +AM LL+E +G
Sbjct: 176 GRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCE------ 229
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +I A+C G + +AL +L + HG P ++ ++K L
Sbjct: 230 ------------PDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSL 277
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 24/117 (20%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A + + G V TY +++G+C+ GR +A L++
Sbjct: 112 GRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDARRLISG------------- 155
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
M P T TFN +I+ALC G++ AL + M G PS ++ +L+
Sbjct: 156 --------MPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILL 204
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
SN G++EEA ++L + ++GL PD TY ++ G C+ ++ A
Sbjct: 587 ISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRA------------ 634
Query: 155 TQNVVTLIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
I++L RL+ MG P +N+++ C + A+ M G +P ++
Sbjct: 635 -------IRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDEST 687
Query: 214 HDMLIKKL 221
+ +L++ L
Sbjct: 688 YIILLEAL 695
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L+E I N + G ++ FN L+ AL N R+EEA
Sbjct: 333 KNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGN----------------RLEEAL 376
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ V G+ PDVYT+ +++ CKVG + A+ L E G T
Sbjct: 377 DLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT------------- 423
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +I LC +GK+ KAL LL M G S +++ +I L
Sbjct: 424 -----PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 471
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QRLE- 169
+G PDV+TY +++ CK G+ EA +LN+ ++RG ++ T L+ RLE
Sbjct: 315 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 374
Query: 170 ----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G P TFN +I ALC VG H AL L M G P +++ LI
Sbjct: 375 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 434
Query: 220 KL 221
L
Sbjct: 435 NL 436
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------------- 96
L+E +D+ + G + V FN L+ AL + + A++ F
Sbjct: 372 LEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNT 431
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
N +G++ +A ++L ++++ G TY I+DG CK R EA E+ ++ +G
Sbjct: 432 LIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQG 491
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+++N +T L+ Q + G P IT+N+++ C G I KA
Sbjct: 492 ISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAA 551
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
+L M +G ++ LI L
Sbjct: 552 DILETMTANGFEVDVVTYGTLINGL 576
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 109/251 (43%), Gaps = 45/251 (17%)
Query: 16 LVDSPSRSPSAAESLDLKEN------PRS-LQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
L+D+ ++LDL ++ PRS + +D + K ++E ++F+ + G
Sbjct: 432 LIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQG 491
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKF-------------------FSNHLMVGRVEEAY 108
+ + FN L+ L + D A + +++ G +++A
Sbjct: 492 ISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAA 551
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------------- 154
++L + +G + DV TY +++G CK GR+ A+++L +G+
Sbjct: 552 DILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611
Query: 155 --TQNVVTLIQLLQRL-EMGHIPRTITFNNVIQALC-GVGKIHKALLLLFLMYEHGKIPS 210
N+ + L + + E+G P +T+ V + LC G G I +A + M + G IP
Sbjct: 612 FRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPE 671
Query: 211 RTSHDMLIKKL 221
+S ML + L
Sbjct: 672 FSSFRMLAEGL 682
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
++ S +K +++ + G V FN L+ AL ++ TAV
Sbjct: 157 VEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDE 216
Query: 97 ---NHLMVGRVEE-AYEMLMNVKND----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
LM G VEE + E + VK G T +++G+CK+GR +A+ + +
Sbjct: 217 TTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQ 276
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
I G + +T + L + GH P T+N V+ LC G+
Sbjct: 277 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +A +L M + G +P T+ + LI L
Sbjct: 337 LEEAKGILNQMVDRGCLPDITTFNTLIAAL 366
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ----------- 166
G+KPDV T+ +M C+ + A+ +L E RGV + T L+Q
Sbjct: 176 GIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAA 235
Query: 167 ------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
LEMG +T N +I C +G++ AL + G P + +++ +
Sbjct: 236 LRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNG 295
Query: 221 LDQ 223
L Q
Sbjct: 296 LCQ 298
>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
Length = 595
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
++ EAYE+L +K GL+PDVYTY ++ G CK G + ELL I+ G +VVT
Sbjct: 397 KLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFG 456
Query: 162 ---------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+++ + ++ I P T+ +N +I LC ++ A+ L M E
Sbjct: 457 TLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREK 516
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
+ T+++ L+K L +
Sbjct: 517 NVPANVTTYNALLKGLQDK 535
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 31/197 (15%)
Query: 53 LKERIDIFNSIKKDGTNWS--VSDF---NDLLMALVMLNE------QDTAVKFF---SNH 98
+E+ ++ + + +S S F N++ MA+ + +E + AV +F S
Sbjct: 298 FREKRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISGL 357
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
GR+ +A ++K G K D Y ++ GFC+ + +EA ELL E G+ +V
Sbjct: 358 TQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDV 417
Query: 159 VTLIQLLQRLE-----------MGHI------PRTITFNNVIQALCGVGKIHKALLLLFL 201
T LL L +GH+ P +TF ++ C GK +AL +
Sbjct: 418 YTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRS 477
Query: 202 MYEHGKIPSRTSHDMLI 218
M E P+ ++ LI
Sbjct: 478 MDEARIQPNTVIYNTLI 494
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 87/207 (42%), Gaps = 38/207 (18%)
Query: 36 PRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
P +L + V + +SP + + +S+ +S FN LL AL
Sbjct: 96 PSALLLSKLVRRF-SSPAEAAGFLRDSLASGAPAPDISIFNSLLTALGR----------- 143
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-- 153
G + E+ ++++ +KPDV TY +++G CK G +A+++L+ G
Sbjct: 144 -----AGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALKVLDRMSSPGSD 198
Query: 154 ------VTQNVVTLIQLLQRLE---------MGHI----PRTITFNNVIQALCGVGKIHK 194
+ VV + + RL+ M H+ P +T+N + A C VG I
Sbjct: 199 VCPDIAILNTVVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVTYNCLADAFCRVGDIGM 258
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A ++ M + G P+ + + +I L
Sbjct: 259 ACKIVARMEKEGVAPNVITMNTIIGGL 285
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG + A +++ ++ +G+ P+V T I+ G C+VGR A+E E +R V
Sbjct: 253 VGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAALEFFRE--KRTVWPEARG 310
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+T++ + A + A+ L M +HG P + +I
Sbjct: 311 --------------NAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMISG 356
Query: 221 LDQ 223
L Q
Sbjct: 357 LTQ 359
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQDTAVKFFS-- 96
+A ++++K L+ + +N++ S ++LL ++ Q + V F +
Sbjct: 400 EAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLV 459
Query: 97 -NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ G+ +EA + ++ ++P+ Y ++D CK + A++L +E E+ V
Sbjct: 460 HGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVP 519
Query: 156 QNVVTLIQLLQRLE 169
NV T LL+ L+
Sbjct: 520 ANVTTYNALLKGLQ 533
Score = 36.6 bits (83), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA E + IF S+ + + +N L+ L E D A+K F
Sbjct: 463 CKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDE---------- 512
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
M KN + +V TY A++ G + +A EL++ E T N VT+ L++
Sbjct: 513 ----MREKN--VPANVTTYNALLKGLQDKKMAEKAFELMDRMREERCTPNYVTVDVLMEW 566
Query: 168 L-EMGHIPRTITF 179
L E+G R F
Sbjct: 567 LPEIGETERLKCF 579
>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
viburnoides]
Length = 431
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N V L+
Sbjct: 208 VQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 268 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLI 324
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ ++ + GLKPD TYT ++DG CK G + A E I+ + V
Sbjct: 296 GDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + K LL M
Sbjct: 356 TALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 416 DGHVPSVVTYNVLM 429
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 143 YFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 202
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ + L G +P + F +I C G+
Sbjct: 203 MLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGR 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 263 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 295
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 33/184 (17%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E ++I+N + ++G +V +N L+ L +H G++ EA + +
Sbjct: 337 EALNIWNRMAEEGFEPNVVAYNTLIHGL-------------CSH---GKMGEAVSVSSKM 380
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRLEM- 170
+ +G P+V TY A++DGF K G A E+ N+ + G NVV +++ +L R M
Sbjct: 381 ERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMF 440
Query: 171 -------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
P T+TFN I+ LC G++ A+ L M ++G P+ +++ +
Sbjct: 441 SQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEV 500
Query: 218 IKKL 221
+ L
Sbjct: 501 LDGL 504
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 42/180 (23%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNHL 99
I++++K+DG +V +N LL AL N D A K S+
Sbjct: 171 IYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMS 230
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+G+VEEA E+ + +P+V Y A+++GFC+ + E LL + +E+G+ NV
Sbjct: 231 KLGKVEEARELSIR-----FQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNV- 284
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
IT++ VI +L G+G + AL + M+ G P+ + L+K
Sbjct: 285 -----------------ITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMK 327
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F GRVE A + ++ G P++ TY ++DG K R EA+EL+ E E+G
Sbjct: 465 FIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKG 524
Query: 154 VTQNVVTL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKAL 196
+ N+VT ++LL ++ +G + P IT+N + A C GK+ A+
Sbjct: 525 MELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAI 584
Query: 197 LLLFLMYEHGK-IPSRTSHDMLIKKLDQQ 224
LL + GK +P ++ L+ + Q
Sbjct: 585 QLLDKLSAGGKWVPEVAAYTSLLWGICNQ 613
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 42/232 (18%)
Query: 16 LVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKIKASPLKE-RIDIFNSIKKDG 67
+V+ RS +++ L E P ++ F+ + S E I++F +++ G
Sbjct: 430 MVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYG 489
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+ ++ +N++L L+ N R++EA E++ ++ G++ ++ TY
Sbjct: 490 CSPNIKTYNEVLDGLLKEN----------------RIKEALELVTEMEEKGMELNLVTYN 533
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMG 171
I GFC VG+ EA++LL + + GV + +T IQLL +L G
Sbjct: 534 TIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAG 593
Query: 172 --HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P + +++ +C + +A+L L M G + + + L++ L
Sbjct: 594 GKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGL 645
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113
++ + +F I++ G +V +N LL A ML+E R + + N
Sbjct: 131 EQALKMFYRIREFGCQPTVKIYNHLLDA--MLSEN--------------RFQMIEPIYSN 174
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGH 172
+K DG +P+VYTY ++ CK R + A +LL E +G +VV+ ++ + ++G
Sbjct: 175 MKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGK 234
Query: 173 I-----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ P +N +I C K+ + LLL M E G P+ ++ +I L
Sbjct: 235 VEEARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSL 294
Query: 222 D 222
Sbjct: 295 S 295
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G VE A + + G P+VYT+T++M G+ GR EA+ + N E G NVV
Sbjct: 297 IGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVV- 355
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+N +I LC GK+ +A+ + M +G P+ +++ LI
Sbjct: 356 -----------------AYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALI 396
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L+E I N + G ++ FN L+ AL N R+EEA
Sbjct: 333 KNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGN----------------RLEEAL 376
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ V G+ PDVYT+ +++ CKVG + A+ L E G T
Sbjct: 377 DLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT------------- 423
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +I LC +GK+ KAL LL M G S +++ +I L
Sbjct: 424 -----PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 471
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QRLE- 169
+G PDV+TY +++ CK G+ EA +LN+ ++RG ++ T L+ RLE
Sbjct: 315 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 374
Query: 170 ----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G P TFN +I ALC VG H AL L M G P +++ LI
Sbjct: 375 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 434
Query: 220 KL 221
L
Sbjct: 435 NL 436
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------------- 96
L+E +D+ + G + V FN L+ AL + + A++ F
Sbjct: 372 LEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNT 431
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
N +G++ +A ++L ++++ G TY I+DG CK R EA E+ ++ +G
Sbjct: 432 LIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQG 491
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+++N +T L+ Q + G P IT+N+++ C G I KA
Sbjct: 492 ISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAA 551
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
+L M +G ++ LI L
Sbjct: 552 DILETMTANGFEVDVVTYGTLINGL 576
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 109/251 (43%), Gaps = 45/251 (17%)
Query: 16 LVDSPSRSPSAAESLDLKEN------PRS-LQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
L+D+ ++LDL ++ PRS + +D + K ++E ++F+ + G
Sbjct: 432 LIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQG 491
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKF-------------------FSNHLMVGRVEEAY 108
+ + FN L+ L + D A + +++ G +++A
Sbjct: 492 ISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAA 551
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------------- 154
++L + +G + DV TY +++G CK GR+ A+++L +G+
Sbjct: 552 DILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611
Query: 155 --TQNVVTLIQLLQRL-EMGHIPRTITFNNVIQALC-GVGKIHKALLLLFLMYEHGKIPS 210
N+ + L + + E+G P +T+ V + LC G G I +A + M + G IP
Sbjct: 612 FRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPE 671
Query: 211 RTSHDMLIKKL 221
+S ML + L
Sbjct: 672 FSSFRMLAEGL 682
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
++ S +K +++ + G V FN L+ AL ++ TAV
Sbjct: 157 VEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDE 216
Query: 97 ---NHLMVGRVEE-AYEMLMNVKND----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
LM G VEE + E + VK G T +++G+CK+GR +A+ + +
Sbjct: 217 TTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQ 276
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
I G + +T + L + GH P T+N V+ LC G+
Sbjct: 277 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +A +L M + G +P T+ + LI L
Sbjct: 337 LEEAKGILNQMVDRGCLPDITTFNTLIAAL 366
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ----------- 166
G+KPDV T+ +M C+ + A+ +L E RGV + T L+Q
Sbjct: 176 GIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAA 235
Query: 167 ------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
LEMG +T N +I C +G++ AL + G P + +++ +
Sbjct: 236 LRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNG 295
Query: 221 LDQ 223
L Q
Sbjct: 296 LCQ 298
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L+E I N + G ++ FN L+ AL N R+EEA
Sbjct: 333 KNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGN----------------RLEEAL 376
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ V G+ PDVYT+ +++ CKVG + A+ L E G T
Sbjct: 377 DLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT------------- 423
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +I LC +GK+ KAL LL M G S +++ +I L
Sbjct: 424 -----PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 471
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QRLE- 169
+G PDV+TY +++ CK G+ EA +LN+ ++RG ++ T L+ RLE
Sbjct: 315 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 374
Query: 170 ----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G P TFN +I ALC VG H AL L M G P +++ LI
Sbjct: 375 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 434
Query: 220 KL 221
L
Sbjct: 435 NL 436
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------------- 96
L+E +D+ + G + V FN L+ AL + + A++ F
Sbjct: 372 LEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNT 431
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
N +G++ +A ++L ++++ G TY I+DG CK R EA E+ ++ +G
Sbjct: 432 LIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQG 491
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+++N +T L+ Q + G P IT+N+++ C G I KA
Sbjct: 492 ISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAA 551
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
+L M +G ++ LI L
Sbjct: 552 DILETMTANGFEVDVVTYGTLINGL 576
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
++ S +K +++ + G V FN L+ AL ++ TAV
Sbjct: 157 VEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDE 216
Query: 97 ---NHLMVGRVEE-AYEMLMNVKND----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
LM G VEE + E + VK G T +++G+CK+GR +A+ + +
Sbjct: 217 TTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQ 276
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
I G + +T + L + GH P T+N V+ LC G+
Sbjct: 277 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +A +L M + G +P T+ + LI L
Sbjct: 337 LEEAKGILNQMVDRGCLPDITTFNTLIAAL 366
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ----------- 166
G+KPDV T+ +M C+ + A+ +L E RGV + T L+Q
Sbjct: 176 GIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAA 235
Query: 167 ------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
LEMG +T N +I C +G++ AL + G P + +++ +
Sbjct: 236 LRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNG 295
Query: 221 LDQ 223
L Q
Sbjct: 296 LCQ 298
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 41/231 (17%)
Query: 16 LVDSPSRSPSAAESLDLKEN------PRS-LQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
L+D+ ++LDL ++ PRS + +D + K ++E ++F+ + G
Sbjct: 432 LIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQG 491
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+ + FN L+ L +D ++++A+ ++ + ++GL+P+ TY
Sbjct: 492 ISRNAITFNTLIDGLC----KDK------------KIDDAFGLINQMISEGLQPNNITYN 535
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE-----------------M 170
+I+ +CK G +A ++L G +VVT L+ L
Sbjct: 536 SILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK 595
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G P +N V+Q+L I AL L M E G+ P ++ ++ + L
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGL 646
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 39/186 (20%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----------- 102
+E ++ N+ K+G +V F +L+ M + D A++ N +M
Sbjct: 259 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRM-KNKMMSSKCKLDLQVFGK 317
Query: 103 ---------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
R++EA E+L + +GL P+V TYT+I+DG+CK G+ + A+E+L + +ER
Sbjct: 318 LINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVL-KMMERD 376
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
Q P T+N+++ L K+HKA+ LL M + G IP+ +
Sbjct: 377 GCQ-----------------PNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVIT 419
Query: 214 HDMLIK 219
+ L++
Sbjct: 420 YTTLLQ 425
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 89/198 (44%), Gaps = 35/198 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK--------------FFSNHLMVG-- 102
+F+++ ++G SV +N +++ L + A+K + N L+ G
Sbjct: 195 LFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC 254
Query: 103 --RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ EEA E+L N +G P V T+T +++G+C + ++A+ + N+ + ++
Sbjct: 255 DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQV 314
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+L+ L G +P IT+ ++I C GK+ AL +L +M
Sbjct: 315 FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 374
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P+ +++ L+ L
Sbjct: 375 RDGCQPNAWTYNSLMYGL 392
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 33/163 (20%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F +++ GR+E+A ++++ ++ +G+ PDV TY ++DG +G + A L
Sbjct: 591 TYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRM 650
Query: 150 IERGVTQNVVTLIQLLQRLEMGHI---------------------------------PRT 176
+ N T LL+ L G++ P
Sbjct: 651 VGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTV 710
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T++++I C G++ +A LLL M G P+ + +LIK
Sbjct: 711 TTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIK 753
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A ++ + ++G PD YTY+ ++ CK R NEA+ +L++ RG+ +
Sbjct: 498 GNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAY 557
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + EM GH P T+ I + C G++ A L+ M
Sbjct: 558 TILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMER 617
Query: 205 HGKIPSRTSHDMLI 218
G P ++++LI
Sbjct: 618 EGVAPDVVTYNILI 631
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 94/210 (44%), Gaps = 39/210 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
K+ + +++ +++DG + +N L+ LV + A+ +
Sbjct: 358 CKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNV 417
Query: 97 ---NHLMVGRVEE-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
L+ G+ +E A+ + ++ +GLKPD + Y + D CK GR+ EA +
Sbjct: 418 ITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFI-- 475
Query: 149 AIERGVTQNVV---TLIQ-------------LLQRL-EMGHIPRTITFNNVIQALCGVGK 191
+ +GV V TLI L++R+ + G P + T++ ++ ALC +
Sbjct: 476 -VRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKR 534
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+++AL +L M G + ++ +LI ++
Sbjct: 535 LNEALPILDQMSLRGIKCTIFAYTILIDEM 564
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A + + +K DG P+V +T ++ G CK GR +A L + + GV
Sbjct: 154 VRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGV--------- 204
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+P +T+N +I +G+++ AL + LM ++G P +++ LI L
Sbjct: 205 ---------VPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCD 255
Query: 224 Q 224
Q
Sbjct: 256 Q 256
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 21/133 (15%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN--VVTLI--- 162
+++L + GL P V TY++++ GFCK GR EA LL+ +G++ N + TL+
Sbjct: 695 WQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKC 754
Query: 163 ----QLLQRL--------EMGHIPRTITFNNVIQALCGVGKIHKA----LLLLFLMYEHG 206
+ ++ E G P+ ++ ++ LC G K LL L Y H
Sbjct: 755 CCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHD 814
Query: 207 KIPSRTSHDMLIK 219
++ + +D L+K
Sbjct: 815 EVAWKILNDGLLK 827
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ + A M + + G KP TYT ++ +CK GR +A +L+ + GV +VVT
Sbjct: 568 GKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTY 627
Query: 162 IQLLQRL-EMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLM 202
L+ MG+I R T ++ A C LLL L+
Sbjct: 628 NILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLL 670
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 34/164 (20%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A +++ + +F +K+DG + +V F L+ L GRV +A
Sbjct: 151 AKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCK----------------SGRVGDARL 194
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG------VTQNVVTLIQ 163
+ + +G+ P V TY A++ G+ K+GR N+A++ + E +E+ T N +
Sbjct: 195 LFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALK-IKELMEKNGCHPDDWTYNTLIYGL 253
Query: 164 LLQRLE-----------MGHIPRTITFNNVIQALCGVGKIHKAL 196
Q+ E G P +TF N+I C K AL
Sbjct: 254 CDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDAL 297
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------- 168
GL+P+ +T A++ G+C+ G +A L G +N + L+Q L
Sbjct: 98 GLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKA 157
Query: 169 --------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G P F +I LC G++ A LL M ++G +PS +++ +I
Sbjct: 158 LVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 215
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
DGL PD TY ++ +CK G A +E G+ P T
Sbjct: 62 DGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLE------------------PET 103
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T N ++ C G++ KA L +M G + S+ +LI+ L
Sbjct: 104 FTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGL 148
>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Vitis
vinifera]
Length = 829
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 87/221 (39%), Gaps = 57/221 (25%)
Query: 40 QAQRFVDKIKASPLKERIDIFN--------------------SIKKDGTNWSVSDFNDLL 79
+AQ + D + S + E I ++N I + G + ++ FN L+
Sbjct: 498 EAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLI 557
Query: 80 MALVMLNEQDTAVKFFSN--------------HLMVGRVEEA-----YEMLMNVKNDGLK 120
+ AVK LM G EE ++ML ++ +K
Sbjct: 558 YGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIK 617
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
P TYT ++ G CK GR +E+++LL RG+ P IT+N
Sbjct: 618 PTQITYTVVVKGLCKEGRLHESVQLLKYMYARGL------------------FPDQITYN 659
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
VIQ+ C + KA L M +H PS ++++LI L
Sbjct: 660 TVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGL 700
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 52/169 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA +L ++ GLKPD+ TY+ ++ G CK G EA+EL E + + N
Sbjct: 424 GRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVC 483
Query: 162 IQLLQRL------------------------------------EMGHI------------ 173
++ L ++G+I
Sbjct: 484 SAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIE 543
Query: 174 ----PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +TFN++I C GK+ +A+ LL + HG +P+ ++ L+
Sbjct: 544 KGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLM 592
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 33/168 (19%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
SV FN L+ + D A FF M +K GL PDVY+Y ++
Sbjct: 269 SVVSFNALMSGFCKMGSVDVAKSFFC---------------MMIKY-GLLPDVYSYNILL 312
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEM-GHI 173
G C G EA+E N+ GV ++VT +++QR+ + G
Sbjct: 313 HGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLN 372
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ +I C +G I ++ L M G S ++ +L+ L
Sbjct: 373 PDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSL 420
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 37/172 (21%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKF---FSNH----------------LMVGRVEEAYEMLM 112
V +N LL L + + A++F NH ++G + A++++
Sbjct: 305 VYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQ 364
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+ +GL PD+ TYT ++ G C++G E+ +L + + +G+ ++VT LL
Sbjct: 365 RMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLL------- 417
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+LC G+I +A++LL M G P ++ +LI L ++
Sbjct: 418 -----------SSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKR 458
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T H +G +EE++++ + + GLK + TYT ++ CK GR +EA+ LL+E
Sbjct: 377 TYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEM 436
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
G+ P +T++ +I LC G + +A+ L
Sbjct: 437 EVIGLK------------------PDLLTYSVLIHGLCKRGAVEEAIEL 467
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 47 KIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV- 101
K+K L+ I +NS+ + W V +N++ + V NE ++N +++
Sbjct: 193 KMKVLNLQVSIATYNSLLYNLRHTDIMWDV--YNEIKASGVPQNE-------YTNPILID 243
Query: 102 -----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
R+++A L + P V ++ A+M GFCK+G + A I+ G+
Sbjct: 244 GLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGL-- 301
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
+P ++N ++ LC G + +AL M HG P ++++
Sbjct: 302 ----------------LPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNI 345
Query: 217 L 217
L
Sbjct: 346 L 346
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
++ G V+EA +++ + + GLKPD++TY I+ G CK G + A E++ +G +V
Sbjct: 239 MLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDV 298
Query: 159 VTLIQLLQRL------EMGHI-----------PRTITFNNVIQALCGVGKIHKALLLLFL 201
++ LL+ L E G P +T++ +I LC GKI +A+ LL L
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 358
Query: 202 MYEHGKIPSRTSHDMLIKKLDQQ 224
M E G P S+D LI ++
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCRE 381
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++EEA +L +K GL PD Y+Y ++ FC+ GR + A+E L I G
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC------- 399
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P + +N V+ LC GK +AL + + E G P+ +S++ + L
Sbjct: 400 -----------LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++A +L +++ PD TY ++ C G+ + A+++LN+ + V+T
Sbjct: 173 RIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYT 232
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L++ L G P T+N +I+ +C G + +A ++ +
Sbjct: 233 ILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELK 292
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P S+++L++ L Q
Sbjct: 293 GSEPDVISYNILLRALLNQ 311
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 97/234 (41%), Gaps = 45/234 (19%)
Query: 15 LLVDSPSRSPSAAESLDL----KENPRSLQAQRFVDKIKASPLKERIDI----FNSIKKD 66
+L+ + R E+++L KE + A + I A + R+D+ ++ D
Sbjct: 338 ILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE-------------------EA 107
G + ++N +L L + D A++ F VG A
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
M++ + ++G+ PD TY +++ C+ G +EA ELL + ++
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVD----------------MRS 501
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
E P +T+N V+ C +I A+ +L M +G P+ T++ +LI+ +
Sbjct: 502 CEFH--PSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 18/100 (18%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179
+PDV+ Y A+++GFCK+ R ++A +L+ + + P T+T+
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS------------------PDTVTY 196
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
N +I +LC GK+ AL +L + P+ ++ +LI+
Sbjct: 197 NIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIE 236
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+E+A +L ++ +G +P+ TYT +++G G EAMEL N+ + I
Sbjct: 523 RIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR----------I 572
Query: 163 QLLQRLEMGHIPRTITFNNVIQ 184
+ + RT NV+Q
Sbjct: 573 DAISEYSFKRLHRTFPLLNVLQ 594
>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA ++L + + GL+PD YTY +++G CK G + A E L+ + G V T
Sbjct: 230 GGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTY 289
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+ L +M G P IT++ +I ALC GKI +A +L +M E
Sbjct: 290 NILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKE 349
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P S+D LI L ++
Sbjct: 350 KALAPDGYSYDPLISALCRE 369
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 43/210 (20%)
Query: 37 RSLQAQRFVDKI------KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90
R L+ R+ + K L + + I K+G VS +N LL L+ + +
Sbjct: 245 RGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEY 304
Query: 91 AVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
K S+ L+ G +++EA +L +K L PD Y+Y ++
Sbjct: 305 GEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLIS 364
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191
C+ G+ + A+E L++ I GH+P +++N+++ +LC G
Sbjct: 365 ALCREGKVDLAIEFLDDMISG------------------GHLPDILSYNSILASLCKNGN 406
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+AL + + E G P+ S++ L L
Sbjct: 407 ADEALNIFEKLGEVGCPPNAGSYNTLFGAL 436
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
K + ++E+A +++ ++ G KPDV+ Y A++ GFCK R + A ++L+
Sbjct: 115 CTKLIKGFFNMKKIEKAIQVMEILEKHG-KPDVFAYNAVISGFCKADRVDHASKVLDRMK 173
Query: 151 ERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIH 193
+RG +VVT L+ Q L+ P IT+ +I+A G I
Sbjct: 174 KRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGID 233
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+A+ LL M G P R ++++++ + ++
Sbjct: 234 EAMKLLDEMLSRGLRPDRYTYNVVVNGMCKE 264
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---- 157
G+V+ A E L ++ + G PD+ +Y +I+ CK G ++EA+ + + E G N
Sbjct: 370 GKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSY 429
Query: 158 -------------VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L +L+ L G P IT+N++I LC G + +A+ LL M+E
Sbjct: 430 NTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFE 489
Query: 205 HGKI-PSRTSHDMLI 218
K P+ S++ ++
Sbjct: 490 SEKCQPTVISYNTVL 504
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 67 GTNWSVSD-FNDLLMALVMLN-----EQDTAVKFFSNHLMVGRVEEAYEMLMNV-KNDGL 119
G WS D L M L ML+ ++ T S G V++A E+L+++ +++
Sbjct: 434 GALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKC 493
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
+P V +Y ++ G CKV R +A+E+L + G N T L+Q
Sbjct: 494 QPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQ 540
>gi|242075674|ref|XP_002447773.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
gi|241938956|gb|EES12101.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
Length = 380
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 43/245 (17%)
Query: 3 ISAANSPTPFSVLLVDSPSRSPSAAESLDL-KENPRSLQAQRF---VDKIKASPLKER-I 57
+ AA +PT ++ L+ + SR+ E L L + P S A F + + AS K +
Sbjct: 42 VPAALTPTAYNALM-SAYSRAGRHDEVLRLFRSLPFSPTAPLFTTLISSLAASGSKSAAL 100
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG--------------- 102
D F S+ G + S F LL ++ + FF +G
Sbjct: 101 DAF-SLLASGLGPTTSAFTALLKSIDAAPSESVYRAFFGTMAAMGCAPDAATYNCLIWML 159
Query: 103 ----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
R++EA+ +L ++ +G+ P V +YTAI+ G+CK GR EA L++ I+ G +V
Sbjct: 160 CDSQRLDEAWGVLDSMLEEGICPTVRSYTAILHGYCKQGRVLEAERLVDTMIQVGCAPDV 219
Query: 159 VT---LIQLLQRL-EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFL 201
++ LIQ L R+ E G + P +T+N + ALC +G + +A + +
Sbjct: 220 ISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSALCRMGFLDEAFRQVDV 279
Query: 202 MYEHG 206
M G
Sbjct: 280 MLSRG 284
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG + +L + G P+ TY M C++G +EA ++ + RGV+ + T
Sbjct: 232 VGEFGKVERILGESEAKGWTPNAVTYNIYMSALCRMGFLDEAFRQVDVMLSRGVSMTIET 291
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ L L E+ +N ++ LC G + L LL +
Sbjct: 292 VNILFDCLCRDSMFSEAVSLLEYSEELNWNVDVFCYNTLMSRLCDAGDFARVLKLLVDLV 351
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ G P S + I+ L
Sbjct: 352 KKGIGPDMFSFTIAIRSL 369
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG +A EML +++N G+ PDV +Y ++ GFCK G EA+ +L+E GV
Sbjct: 706 VGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQ----- 760
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P ITFN + G G +A ++ M EHG +P+ ++ ++I
Sbjct: 761 -------------PCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVI 805
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 42/229 (18%)
Query: 24 PSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLL---- 79
P SLD+K L A K K + I+IF +K+ G + ++ +N +L
Sbjct: 229 PVEEYSLDVKACTTVLHAYARTGKYKRA-----IEIFEKMKETGLDPTLVTYNVMLDVYG 283
Query: 80 -------MALVMLNE---------QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123
M L +L+E + T S G ++EA ++K +G KP
Sbjct: 284 KMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGT 343
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------------- 168
TY +++ F K G EA+ +L E + + +T +L+
Sbjct: 344 ATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDT 403
Query: 169 --EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
G +P IT+ VI A G KAL + M E G +P+ +++
Sbjct: 404 MASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYN 452
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 95/201 (47%), Gaps = 23/201 (11%)
Query: 40 QAQRFVDKIKASPLKERIDIFNS-IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---F 95
+A+RF D +K + K +NS ++ G ++ ++L + N + A+ +
Sbjct: 326 EARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELV 385
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ ++ G +E ++ + + G+ P+ TYT +++ + K G +++A+E+ + E G
Sbjct: 386 AAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCV 445
Query: 156 QNVVT----------------LIQLLQRLEM-GHIPRTITFNNVIQALCG-VGKIHKALL 197
NV T +I++L +++ G P IT+N ++ A+CG GK
Sbjct: 446 PNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTML-AVCGEKGKQKFVSQ 504
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
+L M G P + + + LI
Sbjct: 505 VLREMKNCGFEPDKETFNTLI 525
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 37/189 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
KA + +++F +K+ G +V +N++L+ L + + +K
Sbjct: 425 KAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRI 484
Query: 97 --NHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N ++ G+ + ++L +KN G +PD T+ ++ + + G + ++ E
Sbjct: 485 TWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEM 544
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ G T P T+N ++ AL G A ++ M + G P
Sbjct: 545 VAAGFT------------------PCITTYNALLNALARRGNWKAAESVVLDMRKKGFKP 586
Query: 210 SRTSHDMLI 218
+ TS+ +L+
Sbjct: 587 NETSYSLLL 595
Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 20/124 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
+E A+ L +N+G K D+ +++ F + + +A E+L+ G+ N+VT
Sbjct: 642 MERAFHQL---QNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNS 698
Query: 161 LIQLLQRL-------EM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LI L R+ EM G P +++N VI+ C G + +A+ +L M +G
Sbjct: 699 LIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANG 758
Query: 207 KIPS 210
P
Sbjct: 759 VQPC 762
>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
gi|223975267|gb|ACN31821.1| unknown [Zea mays]
Length = 469
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 17/143 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ +L +G V +A L V GL PDV T+T+++DG C + ++A +E E GV
Sbjct: 263 NGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVR 322
Query: 156 QNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLL 198
NV T I+LL +++M G P +FN I + C + KI KA L
Sbjct: 323 PNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKL 382
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
M +G P +++ LIK L
Sbjct: 383 FNDMSRYGVSPDSYTYNALIKAL 405
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 36/194 (18%)
Query: 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV 104
V +++S L E +D F IKK G N + ++ + + + A K+FS +
Sbjct: 161 VKVLESSDLCELVDDF--IKKGG-NLGFDMYIMIIKSFLRCKDISKANKYFSQMV----- 212
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+DGL V +Y ++D F K G A+E + E G + N+VT L
Sbjct: 213 -----------SDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTL 261
Query: 165 LQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ +E G +P ITF ++I LC ++ A M E G
Sbjct: 262 INGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGV 321
Query: 208 IPSRTSHDMLIKKL 221
P+ ++++LI L
Sbjct: 322 RPNVQTYNVLIHGL 335
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA ++ ++ G++P+V TYT ++DGFC R EA+ +L E+GV+ T
Sbjct: 24 GIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKGVSATEATY 83
Query: 162 IQLLQ 166
L+
Sbjct: 84 RSLVH 88
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 18/101 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +A E+L +K DG+ PD Y++ A + FC++ + +A +L N+ GV+
Sbjct: 339 GHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVS------ 392
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
P + T+N +I+ALC ++ +A ++ M
Sbjct: 393 ------------PDSYTYNALIKALCDERRVDEAKEIILAM 421
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 18/102 (17%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
DG +PD +TY ++ G C+ G +EA+ L+ + G+ NVVT L
Sbjct: 4 DGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTML------------ 51
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ C ++ +A+ +L M E G + ++ L+
Sbjct: 52 ------VDGFCNASRVEEAVCVLERMKEKGVSATEATYRSLV 87
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A + + I++ N +K DG FN +++ + ++E+A +
Sbjct: 338 AGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMR----------------KIEKAQK 381
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+ ++ G+ PD YTY A++ C R +EA E++
Sbjct: 382 LFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEII 418
>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 572
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 95/212 (44%), Gaps = 42/212 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR----- 103
K L E + +F+ + G + + ++ L+ L +L A++ F + M+ R
Sbjct: 206 KDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLF--YAMIHRKIMPD 263
Query: 104 -----------------VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
V+ Y + + +++D LKPDV TY ++MDG C + + +
Sbjct: 264 QLTFNTLVDALCKEGMVVKAHYVVDVMIQSD-LKPDVVTYNSLMDGHCLRSEMGKTVNVF 322
Query: 147 NEAIERGVTQNVVTL---------IQLLQRL--------EMGHIPRTITFNNVIQALCGV 189
+ + +G +V++ IQ++ + + G IP T+T+N +I LC V
Sbjct: 323 DTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHV 382
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G++ A+ L M +G+IP ++ +L L
Sbjct: 383 GRLRDAIALFHEMVVYGQIPDLVTYRILFDYL 414
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G++ EA ++ + +G +PDV TY +++G CKVG ++ A+ L +R VV
Sbjct: 138 GKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVY 197
Query: 160 -TLI-------QLLQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T+I QL + L + G P T++++I LC +G +A+ L + M
Sbjct: 198 STIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIH 257
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+P + + + L+ L ++
Sbjct: 258 RKIMPDQLTFNTLVDALCKE 277
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 33/183 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ E + +F+ + +G V + L+ L + TA++F L
Sbjct: 140 IGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRF----------------LR 183
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE-MG 171
+++ +P V Y+ I+D CK + EA+ L ++ + +G++ N T L+ L +G
Sbjct: 184 SMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILG 243
Query: 172 H----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
H +P +TFN ++ ALC G + KA ++ +M + P +++
Sbjct: 244 HWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYN 303
Query: 216 MLI 218
L+
Sbjct: 304 SLM 306
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +E A ++ + + GL PDV TYT +++G C+ G EA +L E E G + N T
Sbjct: 453 GELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACT 511
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 75/190 (39%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
K + + + +F + + G +N L+ L + A+ F ++ G
Sbjct: 346 KIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLV 405
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
R+ EA +L ++ L PD++ Y+ +MDG C+ G A +L ++
Sbjct: 406 TYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKL 465
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+G+ P T+ +I LC G + +A L M E+G P
Sbjct: 466 SSKGLH------------------PDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSP 507
Query: 210 SRTSHDMLIK 219
+ +++++ +
Sbjct: 508 NACTYNLITR 517
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 89/210 (42%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
+ + + + + +FN + + S+ DF+ LL ++ + T + +
Sbjct: 30 LNVNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNT 89
Query: 96 -------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++ + R+ A+ +L ++ G +P T+T ++ G C G+ EA++L ++
Sbjct: 90 YTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDK 149
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGK 191
G +V+T I+ L+ +E + P + ++ +I +LC +
Sbjct: 150 MTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQ 209
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +AL L M G P+ ++ LI L
Sbjct: 210 LTEALSLFSDMLAKGISPNNFTYSSLIHGL 239
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA ++ + +G P+ TY I GF + + A++L E + RG + +V T
Sbjct: 488 GLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTT 547
Query: 162 IQLLQRLE 169
L++ L
Sbjct: 548 TLLVEMLS 555
>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
inaguensis]
Length = 431
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 208 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 268 EIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLI 324
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ ++ + GLKPD +TYT ++DG CK G + A + I+ + + V
Sbjct: 296 GDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + K LL M
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
+G +PS ++++L+
Sbjct: 416 NGHVPSVVTYNVLM 429
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 143 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 202
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G IP +TF +I C G+
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGR 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 263 VDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKK 295
>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
Length = 727
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +++A ++ M + +DGL+PD TYT ++ C+ G +EA +LLN + G+ +VVT
Sbjct: 537 TGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVT 596
Query: 161 ---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI R L++G P IT+N +I ALC G+ A M
Sbjct: 597 YTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEML 656
Query: 204 EHGKIPSRTSHDMLI 218
E G P++ ++ +LI
Sbjct: 657 ERGLAPNKYTYTLLI 671
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 23/185 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
I + + K G ++ D DL M +V Q + + H G + EA ++L +
Sbjct: 530 IIDGLCKTG---NLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMV 586
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR----- 167
+DGL+P V TYT ++ C+ G A + ++ G+ N +T LI L R
Sbjct: 587 SDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTL 646
Query: 168 ---------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
LE G P T+ +I C G A+ L F M+++G P +H+ L
Sbjct: 647 LAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALF 706
Query: 219 KKLDQ 223
K D+
Sbjct: 707 KGFDK 711
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 81 ALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN 140
A+ +L + T + + G ++EA +L +++ GL P V TY ++DG+C++G
Sbjct: 377 AMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLE 436
Query: 141 EAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVI 183
EA L E +E+G +V T L+ + L G P +N I
Sbjct: 437 EARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRI 496
Query: 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A +G HKA L +M G P +++++I L
Sbjct: 497 CAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGL 534
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE A ++ GL PD+ TY ++++G+CK G EA+ LL +
Sbjct: 364 QVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGD-------------- 409
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L+R G P +T+N +I C +G + +A L M E G P ++ +L+
Sbjct: 410 --LRR--AGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILM 461
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L++G +A+++ + G+ PD TY I+DG CK G +A +L + + G+ +
Sbjct: 500 LILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDC 559
Query: 159 VTLIQLLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFL 201
+T L+ E G + P +T+ +I C G ++ A
Sbjct: 560 ITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRK 619
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M + G P+ ++++LI L
Sbjct: 620 MLDVGIEPNEITYNVLIHAL 639
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 19/146 (13%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------- 102
L E + N + DG SV + L+ +A +F L VG
Sbjct: 575 LSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNV 634
Query: 103 ---------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
R AY + GL P+ YTYT ++DG C+ G +A+ L E + G
Sbjct: 635 LIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNG 694
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITF 179
+ + T L + + GH+ I +
Sbjct: 695 IPPDYCTHNALFKGFDKGHMYHAIEY 720
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++ + M ++N+G+ P + TY AI+ G K +E +E
Sbjct: 328 GFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLK-----------SEQVE-------AAQ 369
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ + MG +P IT+N+++ C G + +AL LL + G P+ +++ LI
Sbjct: 370 LKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLI 426
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-------VTQNVV-----------T 160
++P + TY ++D F K GR +EA LL E +G VT NVV
Sbjct: 239 IEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLEN 298
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+L+ + + + T+N +I AL G + K L M G +P+ +++ +I
Sbjct: 299 AAKLVDSMRLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHG 358
Query: 221 L 221
L
Sbjct: 359 L 359
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 92/215 (42%), Gaps = 48/215 (22%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------- 96
A P++E I K G + V F L+ ALV D A KFF+
Sbjct: 307 AEPIQEMI-------KSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVT 359
Query: 97 -----NHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
N L GR+EEA E+ + +K + PD Y ++DG K G ++ A L E
Sbjct: 360 YTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMK 419
Query: 151 ERGVTQNVVT---LIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIH 193
+RG+ N+ T +I +L + E G +P T+N +I L G++
Sbjct: 420 DRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMD 479
Query: 194 KALLLLFLMYEHGK--IPSRTS---HDMLIKKLDQ 223
K L ++ M E G I SR S H+ I+ D+
Sbjct: 480 KVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADR 514
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 92/195 (47%), Gaps = 37/195 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
K+ + + +D+F +K++G + ++ LL +LV + D A++ F+
Sbjct: 645 KSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTF 704
Query: 98 --HLMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++MV RV+EA +++ ++KN + PD++TYT+++DG K GR EA + +
Sbjct: 705 VYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKM 764
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
E GH P + + +++ L GK+ AL++ M + +P
Sbjct: 765 TEE------------------GHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVP 806
Query: 210 SRTSHDMLIKKLDQQ 224
++ LI L ++
Sbjct: 807 DVVTYSSLIDSLGKE 821
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRVEEAY N + G P+V Y++++D F K G + A+EL E R N+VT
Sbjct: 822 GRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTY 881
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L ++G +P +T+N +I + +G + +A M E
Sbjct: 882 NNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKE 941
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G +P + LI+ L +
Sbjct: 942 KGIVPDVITFTSLIESLGK 960
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA ++L +K P V TYT ++DG K GR +EA+ LL E ++G +VVT
Sbjct: 542 GHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTY 601
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + + G + T++ VI LC + +AL + M E
Sbjct: 602 SSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKE 661
Query: 205 HGKIPSRTSHDMLIKKL 221
G P ++ L+ L
Sbjct: 662 EGMEPLLGNYKTLLSSL 678
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 39/208 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------HLMV-- 101
++IFN +K G N S + +N +L LV +AV F + V
Sbjct: 237 LEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHS 296
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
GR++ A E + + G+ P V+T+T ++D K G +EA + N + N
Sbjct: 297 FNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPN 356
Query: 158 VVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
VVT L+ L E P I +N +I L G+ A L
Sbjct: 357 VVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFK 416
Query: 201 LMYEHGKIPSRTSHDMLIK---KLDQQP 225
M + G +P+ +++++I K +QP
Sbjct: 417 EMKDRGLVPNLRTYNIMISVLGKAGRQP 444
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 40/209 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE- 106
+K++ + E + +S+K + + LL L + A F+ G +
Sbjct: 714 VKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDV 773
Query: 107 -AYEMLMNVKNDGLK-----------------PDVYTYTAIMDGFCKVGRSNEAMELLNE 148
AY LM+V G K PDV TY++++D K GR EA
Sbjct: 774 VAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFEN 833
Query: 149 AIERGVTQNV-------------------VTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189
+I +G T NV + L + +QR + P +T+NN++ L
Sbjct: 834 SISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQC--PPNIVTYNNLLSGLAKA 891
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G+++ A LL M + G +P ++++LI
Sbjct: 892 GRLNVAEKLLEEMEKVGCVPDLVTYNILI 920
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V+EA +K G+ PDV T+T++++ KV + EA EL + E G
Sbjct: 926 MGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYN----- 980
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
P +T+N +I L GK+H+A ++ M G +P
Sbjct: 981 -------------PSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMP 1016
>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 680
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 51/243 (20%)
Query: 8 SPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDK------------IKASPLKE 55
+PTP PS SA +P S QR K+S E
Sbjct: 152 TPTP------TRPSSGASATAEGSATRSPCSTMLQRGCQPSVVTYTVLLEAVCKSSGFGE 205
Query: 56 RIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
+++ + ++ G ++ +N ++ M E GRV++A E+L +
Sbjct: 206 AMNVLDEMRAKGCTPNIVTYNVIING--MCRE--------------GRVDDAKEILNRLS 249
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-------------- 161
+ G +PD+ +YT ++ G C R ++ L E +++ N VT
Sbjct: 250 SYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVE 309
Query: 162 --IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IQ+LQ++ + G P T N VI A+C G++ A L M +G P S+ ++
Sbjct: 310 RAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVL 369
Query: 219 KKL 221
+ L
Sbjct: 370 RGL 372
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++AY+ L N+ G PD +YT ++ G C+ GR A ELL E + +
Sbjct: 341 GRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCP------ 394
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN I LC G I +A+ L+ LM E+G +++ L+
Sbjct: 395 ------------PNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGF 442
Query: 222 DQQ 224
Q
Sbjct: 443 CVQ 445
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 20/150 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF G VEEA E++ + G P++ T+ ++DG K S EA+ELL+ +
Sbjct: 506 VSFFCQK---GFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVS 562
Query: 152 RGVTQNVVTL----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHK 194
+GV+ + +T IQ+L ++ MG P+ +N ++ ALC + +
Sbjct: 563 KGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQ 622
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ M +G +P+ +++ +LI+ L +
Sbjct: 623 AIDFFAYMVSNGCMPNESTYIILIEGLAHE 652
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
EA +L ++ G P++ TY I++G C+ GR ++A E+LN G ++V+ +L
Sbjct: 205 EAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVL 264
Query: 166 QRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L +P +TF+ +++ C G + +A+ +L M +HG
Sbjct: 265 KGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCT 324
Query: 209 PSRTSHDMLIKKLDQQ 224
P+ T +++I + +Q
Sbjct: 325 PNTTLCNIVINAICKQ 340
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A +++ + G + TY A++ GFC GR + A+EL N T TL
Sbjct: 411 GLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTL 470
Query: 162 I-------------QLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ +LL + P +TFN ++ C G + +A+ L+ M EHG
Sbjct: 471 LTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGC 530
Query: 208 IPSRTSHDMLIKKLDQ 223
P+ + + L+ + +
Sbjct: 531 TPNLITFNTLLDGITK 546
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113
+E I + ++++ G V +N +L AL E D A+ FF AY
Sbjct: 586 EEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFF-----------AY----- 629
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ ++G P+ TY +++G G EA +L+E +GV
Sbjct: 630 MVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGV 670
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ L+E +++F+ + G +V +N L+ A A + FS MVG
Sbjct: 126 RVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQ--MVG------ 177
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+G+ PDV T+T ++D K G+ EA ++ I++G N+VT LL L
Sbjct: 178 --------EGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGL 229
Query: 169 ----EMGHIPR-------------TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+M H R I++N +I C GK +A+ L M PS
Sbjct: 230 CLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSI 289
Query: 212 TSHDMLIKKLDQ 223
T++ +L+K L Q
Sbjct: 290 TTYTILLKALYQ 301
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 93/201 (46%), Gaps = 36/201 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK-------------FFSNHLMV-- 101
+++F+ + + G + + L+ AL + AV+ FF+ L++
Sbjct: 29 LELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVIDS 88
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G + +M + N G+ P+V Y+++++G C+VG+ EA+ L +E + +G+ N
Sbjct: 89 LCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKAN 148
Query: 158 VVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V+T L+ Q + G +P +TF +I L GK+ +A +
Sbjct: 149 VITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFE 208
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
LM + G+ P+ +++ L+ L
Sbjct: 209 LMIKQGEAPNIVTYNSLLNGL 229
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 88/247 (35%), Gaps = 71/247 (28%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K ++E IF + K G ++ +N LL L + ++ D AV+ F
Sbjct: 196 KKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVI 255
Query: 96 ------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ + G+ EEA + ++ + L P + TYT ++ + GR A EL N
Sbjct: 256 SYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNM 315
Query: 150 -------------------IERGVTQNVVTLIQLLQRLE--------------------- 169
+ G + + + + L+ ++
Sbjct: 316 QICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRW 375
Query: 170 ------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+G +P +T+N +I LC GK+ +A L M E G S + +
Sbjct: 376 ESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFI 435
Query: 218 IKKLDQQ 224
I+ Q+
Sbjct: 436 IRGFLQE 442
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 34/170 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K ++E ID+F S+K S+ ++ L+ + R E A
Sbjct: 336 KNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGM----------------FQARRWESAM 379
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + GL P++ TY +++G CK G+ EA L + E G Q+
Sbjct: 380 EIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQD----------- 428
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
I+FN +I+ ++ KA+ L M E P+ + ML+
Sbjct: 429 -------EISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLV 471
>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
Length = 637
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 41/201 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SN 97
+ ++++++K G + +V +N L+ AL + D A K S
Sbjct: 142 VPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSG 201
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+GRVEEA L P +Y A++ C R E ++NE ++RG+ N
Sbjct: 202 MCKLGRVEEARGFLAETV-----PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPN 256
Query: 158 VVTLIQ-----------------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
VVT L + + MG P +TF +++ GK+H AL +
Sbjct: 257 VVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWH 316
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M + G PS S+++LI+ L
Sbjct: 317 WMVDEGWAPSTISYNVLIRGL 337
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 19/140 (13%)
Query: 98 HLMVG--RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
H + G R+ E + ++ + GL+P+V TYT I+D FCK A +L + G T
Sbjct: 230 HALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCT 289
Query: 156 QNVVTLIQLLQ----------RLEMGH-------IPRTITFNNVIQALCGVGKIHKALLL 198
NV+T L++ L M H P TI++N +I+ LC +G + AL
Sbjct: 290 PNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDF 349
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
M + +P+ T++ L+
Sbjct: 350 FNSMKRNALLPNATTYSTLV 369
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G ++ A + ++K + L P+ TY+ ++DGF G + AM + NE G NVV
Sbjct: 340 IGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVV 399
Query: 161 LI----------------QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ ++ M + P T+TFN +I LC G++ +AL + M
Sbjct: 400 YTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMR 459
Query: 204 EHGKIPSRTSHDMLIKKL 221
+G P+ +++ L+ L
Sbjct: 460 RNGCHPNDRTYNELLHGL 477
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 43/187 (22%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLL--------------MALVMLNE--------QDTAVKF 94
+++F+ ++++G + + +N+LL M + MLN +T +
Sbjct: 452 LNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINC 511
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
M + A +L + G++PD +T+ AI+ +CK G+ + A LL +
Sbjct: 512 LCQMCMR---KHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNC 568
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+NVV + +I LC GK+ A++ L M G P+ +
Sbjct: 569 PRNVV------------------AYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATW 610
Query: 215 DMLIKKL 221
++L++ +
Sbjct: 611 NVLVRAI 617
>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Cucumis sativus]
gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial-like [Cucumis sativus]
Length = 849
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR EA L ++ +G PD+ +Y+A MDG K+ + + A+EL + RG +VV+
Sbjct: 574 GRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDICTRGCRPDVVSH 633
Query: 161 --LIQ-------------LLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI+ L ++ + G +P +++N +I C G I KA+L L M E
Sbjct: 634 NILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNE 693
Query: 205 HGKIPSRTSHDMLI 218
K P+ S+ LI
Sbjct: 694 ENKKPTIISYTTLI 707
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 37/181 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K + L +++F I G V N L+ + + A F + G V A
Sbjct: 606 VKINKLDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSA 665
Query: 108 --YEMLMN--VKNDGL---------------KPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
Y +L+N KN + KP + +YT +++G C GR ++A L NE
Sbjct: 666 VSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWNE 725
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
E+G + P IT+ ++ LC GK +AL+ M E
Sbjct: 726 MQEKGCS------------------PNRITYMAIVHGLCKCGKPDEALVYYHSMEEKEMK 767
Query: 209 P 209
P
Sbjct: 768 P 768
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 88/202 (43%), Gaps = 41/202 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLN---EQDTAVKFFSNHLMVG----------- 102
+DI + KK N + FN ++ L+ +QD A+ F + + +G
Sbjct: 439 LDIHQTFKKLLPN--TASFNIVIHGLLKTTSKLDQDAALSLFEDMVQLGCERDQLLYNNL 496
Query: 103 --------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG- 153
R++E+Y++L +++ L+P +TY +I C+ + A+ELL E G
Sbjct: 497 IDALCKSDRLKESYKLLRDMEQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGH 556
Query: 154 ---VTQNVVTLIQLLQR-------------LEMGHIPRTITFNNVIQALCGVGKIHKALL 197
+ + + + QL + + G +P ++++ + L + K+ +AL
Sbjct: 557 EPWIKHSTLLVKQLCKNGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALE 616
Query: 198 LLFLMYEHGKIPSRTSHDMLIK 219
L + G P SH++LIK
Sbjct: 617 LFQDICTRGCRPDVVSHNILIK 638
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM 170
LM +K+ G + D YT T ++ +C G+ ++A+ + N+ ERG V I L +
Sbjct: 216 LMEMKDFGWEVDKYTLTPVLMAYCNAGKFDKALIVFNDMHERGWVDGYVFSILALAFSKW 275
Query: 171 GHIPRTITF 179
G + RT+ F
Sbjct: 276 GEVDRTMQF 284
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 84/197 (42%), Gaps = 29/197 (14%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVS-DFNDLLMALVMLNEQDTAVKFFSNH 98
+A F+ K++ + L +N + + W + D + ++ L +NE++ S
Sbjct: 648 EAYNFLHKMRVAGLVPSAVSYNLLINE---WCKNGDIDKAILCLSQMNEENKKPTIISYT 704
Query: 99 LMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
++ GR ++A + ++ G P+ TY AI+ G CK G+ +EA+ + E+
Sbjct: 705 TLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEALVYYHSMEEK 764
Query: 153 GVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVI--QALCGVGKIH 193
+ + + L+ + +E G+IP N V A+ + K
Sbjct: 765 EMKPDSYVSVALIDAFISKHNFSMAFNILKETIEKGNIPDPTDKNYVTIKDAIFKLSKDE 824
Query: 194 KALLLLFLMYEHGKIPS 210
+ L + + E G+IP+
Sbjct: 825 QTGLEVKALIEKGRIPT 841
>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
duartei]
Length = 412
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ G ++E + + + G
Sbjct: 145 VFDAITKWGLRPSVVSYNTLM----------------NGYIRXGDLDEGFXLKSXMLASG 188
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 189 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 248
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 249 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 305
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ ++ + GLKPD TYT +++G CK G + A E I+ + + V
Sbjct: 277 GDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAY 336
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 337 TALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQR 396
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 397 DGHVPSVVTYNVLM 410
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 22/145 (15%)
Query: 40 QAQRFVDKIKASPLK----ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
QA +D++ LK + N K+G S + ++ + ++
Sbjct: 281 QAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALI 340
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S GR +A +ML + + GLKPD TYT I++ FCK G +LL E
Sbjct: 341 SGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKE------- 393
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFN 180
+QR GH+P +T+N
Sbjct: 394 ---------MQR--DGHVPSVVTYN 407
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ + G +E L +
Sbjct: 124 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSX 183
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 184 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 243
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 244 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 276
>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
rugosa]
Length = 414
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 147 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 190
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N V L+
Sbjct: 191 VQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAM 250
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 251 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLI 307
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ ++ + GLKPD TYT ++DG CK G + A E I+ + V
Sbjct: 279 GDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXY 338
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + K LL M
Sbjct: 339 TALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 398
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 399 DGHVPSVVTYNVLM 412
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 126 YFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 185
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ + L G +P + F +I C G+
Sbjct: 186 MLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGR 245
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 246 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 278
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
+A L+E +++F+ +KK G S++ +N LLM D AVK +S
Sbjct: 412 CQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNV 471
Query: 98 ----HLMVGRV-----EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
LM G + + AY +L +K +G+ + YTY +++G C V R E +L
Sbjct: 472 VTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKS 531
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
+ G ++T ++ Q E G P IT+ + I C G
Sbjct: 532 FMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGC 591
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
AL +L + G P +++ LI Q+
Sbjct: 592 SDMALKMLNDVRRRGLQPDIVAYNALINGFCQE 624
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 37/179 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLN---EQDTAVKFF----------------SNHL 99
+ + +K++G + + +N L+ + M++ E D +K F + +
Sbjct: 493 LLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFV 552
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G + A+ + ++ GL P++ TYT+ +DG+C+ G S+ A+++LN+ RG+
Sbjct: 553 KAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQ---- 608
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P + +N +I C G + AL LL ++ + G P+ ++ LI
Sbjct: 609 --------------PDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLI 653
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F + G + A +ML +V+ GL+PD+ Y A+++GFC+ G + A++LL
Sbjct: 578 TYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVIL 637
Query: 150 IERGVTQNVV---TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKI 192
++ G+ N V +LI + L M G + T T+ +I G +
Sbjct: 638 LKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNV 697
Query: 193 HKALLLLFLMYEHGKIP 209
AL L M G IP
Sbjct: 698 AFALELYSEMMAKGYIP 714
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H ++ EA + +K G+KP + TY +++ G+CK G +EA++L +E G N
Sbjct: 411 HCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPN 470
Query: 158 VVTLIQLLQRLEMGHIPRT---------------------ITFNNVIQALCGVGKIHKAL 196
VVT I L++ G+I + T+N +I +C V ++ +
Sbjct: 471 VVTYITLMR----GYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVD 526
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
+L G IP+ +++ +I
Sbjct: 527 GMLKSFMSEGFIPTMMTYNSII 548
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ N M+ V + YE ++ G+ D TYT ++DGF K G A+EL +E + +G
Sbjct: 656 YKNLNMMKEVSKFYESMIK---GGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGY 712
Query: 155 TQNVVTLIQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALL 197
+ T L L EM + P +N +I K+ +A
Sbjct: 713 IPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFR 772
Query: 198 LLFLMYEHGKIPSRTSHDMLIKK 220
L M G P T++D+L+ K
Sbjct: 773 LHDEMLNMGIQPDDTTYDILVSK 795
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG ++AYE+ + GL P + + ++ G R +A+ L E + G
Sbjct: 345 VGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSG------- 397
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P T+NN+I C K+ +AL L M + G PS +++ L+
Sbjct: 398 ------------LPDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLL 443
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+EEA + +++ G K DV T +M G+C A+ L E ++ G+
Sbjct: 275 TGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGI------ 328
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+P + + +I+ VG KA L M G +PS +++K
Sbjct: 329 ------------VPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKG 376
Query: 221 L 221
L
Sbjct: 377 L 377
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA E+ +KN G+ PDVY+Y+ ++DGFC+ GR ++A E+ E G+
Sbjct: 294 GILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGI------- 346
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P +++ +I C G++ KAL + M G +P S+ +LI
Sbjct: 347 -----------LPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILI 392
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 21/139 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ---NV 158
GRV++A E+ +KN G+ PDVY+Y+ ++DGFC+ G + A++ E + N
Sbjct: 364 GRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNY 423
Query: 159 VTLIQ----------------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+LI+ ++Q+L G P TI N+++ C +KAL L
Sbjct: 424 CSLIKGYYKSKQFANALKEFRIMQKL--GMWPDTIACNHILSIYCRKPDFNKALALSEKF 481
Query: 203 YEHGKIPSRTSHDMLIKKL 221
E+G + S++ I ++
Sbjct: 482 QENGVHFNPYSYNEFIHRI 500
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 18/134 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++ AY + +K + PD YT+++ GFC G A L +E G + NVVT
Sbjct: 575 KMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYT 634
Query: 163 ----------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+L +++ E G P I + +I A C G++++A L M +
Sbjct: 635 CFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQE 694
Query: 206 GKI-PSRTSHDMLI 218
G+ P+ + LI
Sbjct: 695 GRCTPNVVMYTCLI 708
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F + +L + + +A+++ +K G+ PD YT ++ FC G N A L +E
Sbjct: 632 TYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEM 691
Query: 150 IERG-VTQNVVTLIQLL 165
+ G T NVV L+
Sbjct: 692 KQEGRCTPNVVMYTCLI 708
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ A E+L + G P+V TY + G CKVG A L+ QN+ Q
Sbjct: 226 IRRASEILGKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLI---------QNLCRKNQ 276
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L H FN VI LC G + +A + M G +P S+ +LI
Sbjct: 277 PLN----NH-----CFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILI 322
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 23/168 (13%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMVGRV------EEAYEMLMNVKNDGLKPDVYTYT 127
DFN L E +S + + R+ E+A ++L + + PDV Y+
Sbjct: 470 DFNKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYS 529
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLL---------QRLEMGH--- 172
++ F K S +A+ L + + G+T NV T LI L RL G
Sbjct: 530 TLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKES 589
Query: 173 --IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P I + +++ C G++ +A L M G P+ ++ I
Sbjct: 590 RVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFI 637
>gi|302771776|ref|XP_002969306.1| hypothetical protein SELMODRAFT_61378 [Selaginella moellendorffii]
gi|300162782|gb|EFJ29394.1| hypothetical protein SELMODRAFT_61378 [Selaginella moellendorffii]
Length = 587
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 35/191 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
++ L ++I+ ++ G S FN L+ L D A
Sbjct: 112 CRSGRLDTCVEIYQEMRSRGFRVSHLAFNSLVCGLCKAGRTDEAWDVLGKSRPSACADAV 171
Query: 97 ------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
+ L + A E++ ++ + P+V TYT+++DG CK GR + AM LL +
Sbjct: 172 TLSTVIHALCSSDCDRALELMRAMQAQRVPPNVVTYTSVIDGLCKAGRRDAAMVLLQQMQ 231
Query: 151 ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
G + P T+T+N +I +LC GK+ A LL M G PS
Sbjct: 232 AAGCS------------------PNTVTYNCLIHSLCKAGKLEDAFALLRGMPSKGCTPS 273
Query: 211 RTSHDMLIKKL 221
+ + L+ +
Sbjct: 274 INNKNTLVSGI 284
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 80/209 (38%), Gaps = 32/209 (15%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
KA + E ++ ++ K +N L L+ LN+ A + FS
Sbjct: 351 CKADKVLEAARVWRAMVKRLGQVDAVTYNSFLYGLLKLNDLSEAARLFSEIDKPTLVSYS 410
Query: 98 -----HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
+ G + + E+ GL+PD+ Y ++ G + L E +
Sbjct: 411 LLVHAYFKAGDLSKVEEVYQAATGQGLRPDLALYNIVLHGLSGAKQEAGVAHLWAEMLNN 470
Query: 153 GVTQNVVTLIQLLQ------RLE-----------MGHIPRTITFNNVIQALCGVGKIHKA 195
GV+ +V T L+ RL+ G +P IT+N ++ LC + +A
Sbjct: 471 GVSPSVATYTILIHALCRDNRLQAARQIIDKMKGQGVLPDAITYNTLLHCLCKNELLDEA 530
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LLL M +H T + ++ L+Q+
Sbjct: 531 RLLLREMKQHCSYTPATWNIVIDGILEQR 559
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 25/185 (13%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMN 113
+N++ W S +D L L + ++ +++++V G++EEA L
Sbjct: 352 YNTLVDACFKWRCS--SDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEK 409
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----- 168
+ +GL PDV TY ++D +CK G +A L++E + +G+ + TL +L L
Sbjct: 410 IAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKR 469
Query: 169 ------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
+ G +P +++ V+ A AL L M E IPS ++++
Sbjct: 470 YEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNT 529
Query: 217 LIKKL 221
LIK L
Sbjct: 530 LIKGL 534
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 34/184 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E + +K+DG + +N L+ A L G +++A +++
Sbjct: 259 LGEARALLARMKRDGIAPTQPTYNTLVSAFARL----------------GWIKQATKVVE 302
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEA------MELLNEAIERGVTQNVVT------ 160
++ G +PD+ TY + G C+ G+ +EA ME L+ A+ VT N +
Sbjct: 303 SMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKW 362
Query: 161 -----LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
++LL+ + + G P +T N V+++LC GK+ +AL L + E G P ++
Sbjct: 363 RCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITY 422
Query: 215 DMLI 218
+ LI
Sbjct: 423 NTLI 426
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 33/170 (19%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
S+S +N L+ L + R++EA + L + GL PD TY I+
Sbjct: 523 SISTYNTLIKGLCRME----------------RLKEAIDKLNELVEKGLVPDETTYNIII 566
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHI 173
+CK G A N+ +E +VVT L+ L E G
Sbjct: 567 HAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKK 626
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
IT+N +IQ++C VG + AL M G P ++++++ L +
Sbjct: 627 VDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSE 676
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
L P + TY ++ G C++ R EA++ LNE +E+G+ + T ++
Sbjct: 520 LIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAF 579
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +E P +T N ++ LC GK+ KAL L E GK +++ LI+ +
Sbjct: 580 RFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSM 639
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 17/119 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-- 154
H G + +A L ++ GL PD TY +++ C+ G EA LL G+
Sbjct: 217 THCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAP 276
Query: 155 TQNVV-TLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLL 198
TQ TL+ RL G P T+N + LC GK+ +A L
Sbjct: 277 TQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRL 335
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 94/217 (43%), Gaps = 45/217 (20%)
Query: 47 KIKASPLKERIDIFNSIKKDGT----NWSVSDFNDLLMALVM-------------LNEQD 89
+ A + +D+F S+K++ W+ +N L+ L + +++
Sbjct: 55 RCNAGEFGKALDLFQSMKREKRVEPDRWT---YNTLISGLCSSGNTEGARKLLSEMRDKN 111
Query: 90 TAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
A F+ ++ + EE+Y++L + G PDV+ + +M GF + +A
Sbjct: 112 IAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAR 171
Query: 144 ELLNEAIERGVTQNVVTL----------------IQLLQRLEM---GHIPRTITFNNVIQ 184
E+ +E G + V+ +++L + M G++P ITF+ +I
Sbjct: 172 EVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIH 231
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LC G++ KAL + M E G P++ ++ LI L
Sbjct: 232 GLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGL 268
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 32/190 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA L + +++F ++K + S+ +N L+ + E A+ F + RVE
Sbjct: 22 KAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVE--- 78
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
PD +TY ++ G C G + A +LL+E ++ + NV T +++ L
Sbjct: 79 ------------PDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSL 126
Query: 169 --------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
EM G P FN V+Q + KA + M E G P
Sbjct: 127 VKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDN 186
Query: 212 TSHDMLIKKL 221
S+ +LI L
Sbjct: 187 VSYHILIHGL 196
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +E+A E+ ++ G KP+ YTYT ++ G C+ + +A EL + + + + V
Sbjct: 236 TGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVA 295
Query: 161 LIQLL----QRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
L+ +R M G P +TFN +I C +GK+ +A L+ M
Sbjct: 296 YNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEM 355
Query: 203 YEHGKIPSRTSHDMLIKKLDQ 223
G ++ +LI L +
Sbjct: 356 GTKGLAADTCTYRILIAGLSR 376
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 86/211 (40%), Gaps = 37/211 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
+ L++ +++F S+ + G + + L+ L + A + F
Sbjct: 234 CRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDA 293
Query: 96 -------SNHLMVGRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+ + G ++EA ++ + GL+P + T+ ++DGFCK+G+ A EL+
Sbjct: 294 VAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVA 353
Query: 148 EAIERGVTQNVVT---LIQLLQR-------LEMGHIPRTITF-------NNVIQALCGVG 190
E +G+ + T LI L R LE+ R F + + LC G
Sbjct: 354 EMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTG 413
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +A + + G +P+ + +L + L
Sbjct: 414 NIDQAYAVFEATRKSGAVPNPETFRILSESL 444
>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
Length = 651
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ +EA ML + G PD T++ ++DG CK G +A +L + I+RG+ +
Sbjct: 92 GKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAF 151
Query: 162 IQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++QRL G P + FN VI C + A LL +M
Sbjct: 152 ETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMI 211
Query: 204 EHGKIPSRTSHDMLIKKL 221
E G +P+ + +LI L
Sbjct: 212 EKGCVPNVFTFTILITGL 229
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
++ AY++L + G P+V+T+T ++ G CK R EA +LL + + G + NVVT
Sbjct: 200 LDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYST 259
Query: 161 ----------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L QL++R P +T N +I LC +I +A L M E
Sbjct: 260 VINGLCKQGQVDDAYELFQLMERRNCP--PNVVTHNILIDGLCKAKRIEEARQLYHRMRE 317
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ LI L
Sbjct: 318 TGCAPDIITYNSLIDGL 334
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA E + D PDV TYTA++ CK G+ +EA +L E I RG
Sbjct: 58 GRVVEALEHFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCA------ 110
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+TF+ +I LC G +A +L + + G S + + +I++L
Sbjct: 111 ------------PDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRL 158
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
RV EA ++L + G P+V TY+ +++G CK G+ ++A EL R NVVT
Sbjct: 234 RVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHN 293
Query: 161 -LI-------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LI QL R+ E G P IT+N++I LC ++ +A L + E
Sbjct: 294 ILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPES 353
Query: 206 G 206
G
Sbjct: 354 G 354
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 20/150 (13%)
Query: 31 DLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
D K NP S V+ + + + + + + + G +VS +N LL L L D
Sbjct: 496 DRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWD 555
Query: 90 TAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
A + F + G +V++AYE++ + G PD+ T ++
Sbjct: 556 EATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLI 615
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+CK GR++ A +LL E E G+ N T
Sbjct: 616 GGYCKSGRADLARKLLEEMTEAGLEPNDTT 645
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-----VT 155
VGR ++A ++L + G V +Y ++ G ++ R +EA ++ + G T
Sbjct: 516 VGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEIST 575
Query: 156 QNVVT-----------LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
NVV +L+QR+ ++G P T N +I C G+ A LL M
Sbjct: 576 VNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMT 635
Query: 204 EHGKIPSRTSHDML 217
E G P+ T+HD+L
Sbjct: 636 EAGLEPNDTTHDLL 649
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLL 165
E +++ ++ P A+++ C+VGR+++A +LL++ ERG V + L+ L
Sbjct: 489 EQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGL 548
Query: 166 QRLE--------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
RL+ G P T N VI LC K+ A L+ M + G P
Sbjct: 549 SRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDI 608
Query: 212 TSHDMLI 218
+ + LI
Sbjct: 609 ETCNTLI 615
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI------ 173
P+ +TY ++ GF G + A++LL E G N V L++ L + G +
Sbjct: 7 PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66
Query: 174 ---------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ ++ ALC GK +A +L M G P + LI L
Sbjct: 67 FRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGL 123
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 40/216 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
KA ++E +++ +++ G + +N L+ L + D A + F
Sbjct: 300 CKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAAN 359
Query: 97 ---------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+ +GR+ +A + + + G PD+ TYT+++ +CK R+ E +EL+
Sbjct: 360 AVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVE 419
Query: 148 EAIERGVTQNVVTLIQLLQRL-EMGHIPRTI----------------TFNNVIQALCGVG 190
E +G V TL +L L E H R I +N V++ +
Sbjct: 420 EMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARAS 479
Query: 191 KIHKALLLLFLMYEHGKI---PSRTSHDMLIKKLDQ 223
K +KAL +L + + PS ++ D L++ L Q
Sbjct: 480 KHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQ 515
>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Vitis vinifera]
Length = 666
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 37/199 (18%)
Query: 44 FVDKIKASPLK----ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL 99
F IK LK E +D ++ + ++G +V +N L+ L AV F+
Sbjct: 319 FTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFN--- 375
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+M +N G P+V TY+A++DG+ K G + A E+ N I G NVV
Sbjct: 376 ---------QMEIN----GCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVV 422
Query: 160 ---TLIQLLQRLEMGHI--------------PRTITFNNVIQALCGVGKIHKALLLLFLM 202
++ +L R M + P T+TFN I+ LCG G++ A+ + M
Sbjct: 423 AYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQM 482
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P+ T+++ L+ L
Sbjct: 483 GNSGCFPNTTTYNELLDSL 501
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 105/231 (45%), Gaps = 41/231 (17%)
Query: 16 LVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKIKASP-LKERIDIFNSIKKDG 67
+VD R+ ++ L EN P ++ F+ + S + I +F+ + G
Sbjct: 427 MVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSG 486
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+ + +N+LL +L+ +D R EA+ ++ ++++ G++ ++ TY
Sbjct: 487 CFPNTTTYNELLDSLL----KDR------------RFGEAFGLVKDMEHRGIELNLVTYN 530
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMG 171
I+ G+C G EA+ELL + + RG + +T+ IQL+ RL G
Sbjct: 531 TIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAG 590
Query: 172 HI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P I + ++I +C + +A++ L M G P+ + ++L++ L
Sbjct: 591 KWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 18/147 (12%)
Query: 92 VKFFSNHLMVGRVEE-AYEML----MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
VK + NH++ ++E ++M+ N+K DG++P+V+TY ++ CK R + A +LL
Sbjct: 146 VKIY-NHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLL 204
Query: 147 NEAIERGVTQNVVTLIQLL------------QRLEMGHIPRTITFNNVIQALCGVGKIHK 194
E +G + V+ L+ + L M P +N +I +C +
Sbjct: 205 VEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEE 264
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A LL M G P+ S+ +I L
Sbjct: 265 AFQLLDEMMNKGIDPNVISYTTIINAL 291
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
EEA+++L + N G+ P+V +YT I++ G ++ +L + RG + N+ T L
Sbjct: 263 EEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSL 322
Query: 165 LQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
++ + G +P + +N ++ LC + A+ + M +G
Sbjct: 323 IKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGC 382
Query: 208 IPSRTSHDMLI 218
P+ ++ LI
Sbjct: 383 CPNVRTYSALI 393
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE + +L + G P+++T+T+++ GF G S+EA++ + I GV NVV
Sbjct: 295 GNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAY 354
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ + ++E+ G P T++ +I G + A + M
Sbjct: 355 NALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMIT 414
Query: 205 HGKIPSRTSHDMLIKKL 221
HG P+ ++ ++ L
Sbjct: 415 HGCHPNVVAYTCMVDVL 431
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L+E I N + G ++ FN L+ AL N R+EEA
Sbjct: 241 KNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGN----------------RLEEAL 284
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ V G+ PDVYT+ +++ CKVG + A+ L E G T
Sbjct: 285 DLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT------------- 331
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +I LC +GK+ KAL LL M G S +++ +I L
Sbjct: 332 -----PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 379
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QRLE- 169
+G PDV+TY +++ CK G+ EA +LN+ ++RG ++ T L+ RLE
Sbjct: 223 EGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE 282
Query: 170 ----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G P TFN +I ALC VG H AL L M G P +++ LI
Sbjct: 283 ALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLID 342
Query: 220 KL 221
L
Sbjct: 343 NL 344
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------------- 96
L+E +D+ + G + V FN L+ AL + + A++ F
Sbjct: 280 LEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNT 339
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
N +G++ +A ++L ++++ G TY I+DG CK R EA E+ ++ +G
Sbjct: 340 LIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQG 399
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+++N +T L+ Q + G P IT+N+++ C G I KA
Sbjct: 400 ISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAA 459
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
+L M +G ++ LI L
Sbjct: 460 DILETMTANGFEVDVVTYGTLINGL 484
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 109/251 (43%), Gaps = 45/251 (17%)
Query: 16 LVDSPSRSPSAAESLDLKEN------PRS-LQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
L+D+ ++LDL ++ PRS + +D + K ++E ++F+ + G
Sbjct: 340 LIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQG 399
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKF-------------------FSNHLMVGRVEEAY 108
+ + FN L+ L + D A + +++ G +++A
Sbjct: 400 ISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAA 459
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------------- 154
++L + +G + DV TY +++G CK GR+ A+++L +G+
Sbjct: 460 DILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 519
Query: 155 --TQNVVTLIQLLQRL-EMGHIPRTITFNNVIQALC-GVGKIHKALLLLFLMYEHGKIPS 210
N+ + L + + E+G P +T+ V + LC G G I +A + M + G IP
Sbjct: 520 FRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPE 579
Query: 211 RTSHDMLIKKL 221
+S ML + L
Sbjct: 580 FSSFRMLAEGL 590
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
++ S +K +++ + G V FN L+ AL ++ TAV
Sbjct: 65 VEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDE 124
Query: 97 ---NHLMVGRVEE-AYEMLMNVKND----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
LM G VEE + E + VK G T +++G+CK+GR +A+ + +
Sbjct: 125 TTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQ 184
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
I G + +T + L + GH P T+N V+ LC G+
Sbjct: 185 EIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 244
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +A +L M + G +P T+ + LI L
Sbjct: 245 LEEAKGILNQMVDRGCLPDITTFNTLIAAL 274
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ----------- 166
G+KPDV T+ +M C+ + A+ +L E RGV + T L+Q
Sbjct: 84 GIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAA 143
Query: 167 ------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
LEMG +T N +I C +G++ AL + G P + +++ +
Sbjct: 144 LRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNG 203
Query: 221 LDQ 223
L Q
Sbjct: 204 LCQ 206
>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 496
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +KE ++F ++ K G +V ++ L+ + +V V +A
Sbjct: 231 KEGKVKEAKNVFAAMMKKGFKPNVVTYSSLM----------------DGYCLVKEVNKAK 274
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ N+ G+ PD+ +Y +++GFCK+ ++ AM L E R +
Sbjct: 275 SIFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKI-------------- 320
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IP +T+N++I LC GKI AL L+ M++ G+ P ++ L+ L
Sbjct: 321 ----IPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDAL 369
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 36/199 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLM---- 100
IFN++ + G N + +N L+ + D A+ F N L+
Sbjct: 276 IFNNMAQGGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLC 335
Query: 101 -VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G++ A +++ + + G PD+ TY++++D CK ++A+ LL + ++G+ N+
Sbjct: 336 KSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMY 395
Query: 160 TLIQLLQRLEMGHIPRTI-----------------TFNNVIQALCGVGKIHKALLLLFLM 202
T L+ L G P T+ +I C G +AL +L M
Sbjct: 396 TYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKM 455
Query: 203 YEHGKIPSRTSHDMLIKKL 221
E+G IP+ +++++I+ L
Sbjct: 456 EENGCIPNAVTYEIIIRSL 474
>gi|255661012|gb|ACU25675.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 376
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 33/188 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + L + + + N + K G + +N L+ LV A KF E+A
Sbjct: 141 KEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLV------GASKF----------EDAV 184
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ + P + TY+ +++G CKV R EA +L+ E +Z+G+ +V+T L++ L
Sbjct: 185 RVVREMGTTNCSPTLVTYSTLINGLCKVERFGEAYDLVKEMLZKGLNPSVITYSLLMKGL 244
Query: 169 EMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+GH P N +I LC VGK ALLL M P+
Sbjct: 245 CLGHKVEMALQLXNQVTSKGFKPDVQMHNILIHGLCSVGKTQLALLLYLDMNRWNCAPNL 304
Query: 212 TSHDMLIK 219
+H+ L++
Sbjct: 305 VTHNTLME 312
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + ++ +L + G D + Y+A+++G CK + ++A+ +LN I+ G N
Sbjct: 108 GYINKSLHVLEIAERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVY 167
Query: 162 IQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EMG P +T++ +I LC V + +A L+ M Z
Sbjct: 168 NALINGLVGASKFEDAVRVVREMGTTNCSPTLVTYSTLINGLCKVERFGEAYDLVKEMLZ 227
Query: 205 HGKIPSRTSHDMLIKKL 221
G PS ++ +L+K L
Sbjct: 228 KGLNPSVITYSLLMKGL 244
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 35/173 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ +K+ +++ + ++G+ SV+ FN ++ L F N G+V+E
Sbjct: 37 RVGRIKDCFELWEMMGREGSR-SVASFNIMMRGL------------FDN----GKVDEVI 79
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+L +K G D TY ++ GFCK G N+++ +L E ER
Sbjct: 80 SILELMKKSGFIEDSITYGILVHGFCKNGYINKSLHVL-EIAER---------------- 122
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G + ++ +I LC K+ KA+ +L M + G P+ ++ LI L
Sbjct: 123 -KGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGL 174
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL---------------- 145
G ++ A + + + PD Y A+++GF +VGR + EL
Sbjct: 4 GDIDGAERVYKEIVESKVSPDAVVYNAMLNGFFRVGRIKDCFELWEMMGREGSRSVASFN 63
Query: 146 --LNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ + G V+++++L+++ G I +IT+ ++ C G I+K+L +L +
Sbjct: 64 IMMRGLFDNGKVDEVISILELMKK--SGFIEDSITYGILVHGFCKNGYINKSLHVLEIAE 121
Query: 204 EHGKIPSRTSHDMLIKKLDQQP 225
G + ++ +I L ++
Sbjct: 122 RKGGVLDAFAYSAMINGLCKEA 143
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 33/168 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K E D+ + + G N SV ++ L+ L + H +VE A
Sbjct: 211 KVERFGEAYDLVKEMLZKGLNPSVITYSLLMKGLCL------------GH----KVEMAL 254
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-------- 160
++ V + G KPDV + ++ G C VG++ A+ L + N+VT
Sbjct: 255 QLXNQVTSKGFKPDVQMHNILIHGLCSVGKTQLALLLYLDMNRWNCAPNLVTHNTLMEGF 314
Query: 161 ---------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + L G P I++N ++ LC +I A+L L
Sbjct: 315 YKDDDIRNALVIWARILRNGLQPDIISYNITLKGLCSCNRISDAILFL 362
>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
Length = 796
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 25/185 (13%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMN 113
+N++ W S +D L L + ++ +++++V G++EEA L
Sbjct: 352 YNTLVDACFKWRCS--SDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEK 409
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----- 168
+ +GL PDV TY ++D +CK G +A L++E + +G+ + TL +L L
Sbjct: 410 IAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKR 469
Query: 169 ------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
+ G +P +++ V+ A AL L M E IPS ++++
Sbjct: 470 YEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNT 529
Query: 217 LIKKL 221
LIK L
Sbjct: 530 LIKGL 534
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 34/184 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E + +K+DG + +N L+ A L G +++A +++
Sbjct: 259 LGEARALLARMKRDGIAPTQPTYNTLVSAFARL----------------GWIKQATKVVE 302
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEA------MELLNEAIERGVTQNVVT------ 160
++ G +PD+ TY + G C+ G+ +EA ME L A+ VT N +
Sbjct: 303 SMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKW 362
Query: 161 -----LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
++LL+ + + G P +T N V+++LC GK+ +AL L + E G P ++
Sbjct: 363 RCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITY 422
Query: 215 DMLI 218
+ LI
Sbjct: 423 NTLI 426
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 33/170 (19%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
S+S +N L+ L + R++EA + L GL PD TY I+
Sbjct: 523 SISTYNTLIKGLCRME----------------RLKEAIDKLNEFVEKGLVPDETTYNIII 566
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHI 173
+CK G A N+ +E +VVT L+ L E G
Sbjct: 567 HAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKK 626
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
IT+N +IQ++C VG + AL M G P ++++++ L +
Sbjct: 627 VDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSE 676
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
L P + TY ++ G C++ R EA++ LNE +E+G+ + T ++
Sbjct: 520 LIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAF 579
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +E P +T N ++ LC GK+ KAL L E GK +++ LI+ +
Sbjct: 580 RFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSM 639
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 17/119 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-- 154
H G + +A L ++ GL PD TY +++ C+ G EA LL G+
Sbjct: 217 THCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAP 276
Query: 155 TQNVV-TLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLL 198
TQ TL+ RL G P T+N + LC GK+ +A L
Sbjct: 277 TQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRL 335
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ A +L + + G PDV TYT ++D CKVGR ++A E+ E + + NVVT
Sbjct: 286 GRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTY 345
Query: 162 IQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L+ EM P +T+N +I L V + +A + M E G
Sbjct: 346 SALIGGYCRASRVDEGGKVMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGF 405
Query: 208 IPSRTSHDML---IKKLDQQP 225
+P ++ L ++ +DQ P
Sbjct: 406 VPDARTYRGLKRALRMIDQPP 426
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 18/139 (12%)
Query: 101 VGRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+GRV+ A+++ V G +P+ +TY A++DG CK R + A ++ EA +R +VV
Sbjct: 109 LGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVV 168
Query: 160 T-----------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L Q E G++P ++FN +I LC ++ AL + M
Sbjct: 169 TYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEM 228
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ P+ ++ ++I L
Sbjct: 229 IDRDFHPNLVTYSVVIDGL 247
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GRV+EA + +G P + ++ AI+ G C+ R +A+E+ NE I+R N+VT
Sbjct: 180 LGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVT 239
Query: 161 LI----------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
QLL R+ G P + + ++ G++ AL LL M
Sbjct: 240 YSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMV 299
Query: 204 EHGKIPSRTSHDMLIKKL 221
G IP ++ ++I KL
Sbjct: 300 SQGCIPDVVTYTVVIDKL 317
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 19/140 (13%)
Query: 101 VGRVEEAYEML-MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NV 158
GRV +A E +++ +PDV +YT +++G CK+GR + A +L + + G + N
Sbjct: 73 CGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNA 132
Query: 159 VTLIQLL------QRLEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFL 201
T L+ RL+ P +T+N ++ AL +G++ +AL
Sbjct: 133 FTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQ 192
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M E G +P+ S + +I L
Sbjct: 193 MTEEGYVPTLVSFNAIITGL 212
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++ A+ +L + +G++ + T + I+ G C+ GR +A+E + ++E Q
Sbjct: 41 LDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQ------- 93
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTSHDMLIKKLD 222
P +++ +I LC +G++ A L M G P+ +++ L+ L
Sbjct: 94 ----------PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLC 143
Query: 223 QQ 224
+Q
Sbjct: 144 KQ 145
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A +L + + G P+V TYTA++DG CK R ++A++ + + G ++VT
Sbjct: 59 GDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTY 118
Query: 162 IQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E G IP +T+N I LC GK+ K L +L M
Sbjct: 119 NSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMD 178
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P + +I L
Sbjct: 179 RGGISPDVVTFCSIISGL 196
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 18/135 (13%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--- 161
A E+L + +G V TYT ++DG CK G + A LL + + G NVVT
Sbjct: 27 RHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTAL 86
Query: 162 -------------IQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKA-LLLLFLMYEHG 206
IQ ++R L G P +T+N++I LC ++ A L+L LM E G
Sbjct: 87 IDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESG 146
Query: 207 KIPSRTSHDMLIKKL 221
+IP +++ I L
Sbjct: 147 RIPDVVTYNTFISGL 161
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 94/251 (37%), Gaps = 45/251 (17%)
Query: 16 LVDSPSRSPS--AAESL-----DLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
L+D +S AA++L D P + +D + KA + I + + G
Sbjct: 51 LIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSG 110
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAV--------------------KFFSNHLMVGRVEEA 107
+ +N L+ L M N D A F S G++++
Sbjct: 111 CEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKG 170
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
EML + G+ PDV T+ +I+ G CK R ++A ++ +ERG + +T +L
Sbjct: 171 LEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDN 230
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L + GH + T+ +I AL G I A E G +
Sbjct: 231 LSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVME 290
Query: 211 RTSHDMLIKKL 221
+H+ I L
Sbjct: 291 VYTHNAFIGAL 301
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 102 GRVEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G V++A+++ + + G KPDV + ++ GFCK GR ++A +LL E + +
Sbjct: 340 GNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNIC----- 394
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+P +T+N +I G + +A LLL
Sbjct: 395 ------------VPDVVTYNTMIDGQSKFGSLKQAKLLL 421
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------------- 168
D Y ++ G CK + A+ELL+ G +VVT L+ L
Sbjct: 9 DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68
Query: 169 ----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G P +T+ +I LC + H A+ + M G P +++ LI L
Sbjct: 69 QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGL 125
>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 418
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++ DVYTY+ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + L LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYMPS 415
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FC+ G ++LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKEMQRDGYMPSVVT 418
>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 20/124 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------- 168
G+ PDV TYT ++ GFC +G+ EA LLNE + + +V T L+ L
Sbjct: 228 GISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMV 287
Query: 169 --------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
EM H IP +T+N++I LC + +A+ LL M EHG P S+ +L
Sbjct: 288 DEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTIL 347
Query: 218 IKKL 221
+ L
Sbjct: 348 LDGL 351
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 40/194 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ---DTAVKFFS------------- 96
+KE + N +K N V F+ L+ AL ++ D A+ F
Sbjct: 249 MKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVT 308
Query: 97 -NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
N L+ G +E A +L +K G++PDVY+YT ++DG CK GR A E +
Sbjct: 309 YNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLL 368
Query: 151 ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+G NV +N +I LC G +A+ L M G +P+
Sbjct: 369 VKGCHLNV------------------WPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPN 410
Query: 211 RTSHDMLIKKLDQQ 224
+ +I L ++
Sbjct: 411 AITFRTIICALSEK 424
Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 33/164 (20%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
FN++L +LV T + F + +G+ PD+ T + +++ FC
Sbjct: 61 FNNILSSLVKNKRYPTVISLFKQ----------------FEPNGITPDLCTLSILINCFC 104
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-GHIPRTITFNN------------ 181
A + ++RG + +TL L++ L G I +T+ F++
Sbjct: 105 HQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQV 164
Query: 182 ----VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+I LC G+ LL + H P ++ +I L
Sbjct: 165 SYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSL 208
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 18/122 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
V++A +L +K G++PD++TYT +++G CKVGR ++A ++ + + +G +
Sbjct: 423 HVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYS------- 475
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
P T+ ++I C G + L +L M ++G IP+ ++++LI L
Sbjct: 476 -----------PNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLF 524
Query: 223 QQ 224
++
Sbjct: 525 EK 526
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFN----------------DLLMALVMLNEQDTAVKFFS 96
LK +D+FN + D N +V F+ ++L ++ N + V + S
Sbjct: 249 LKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNS 308
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ +V +V +A + + G+ PDV++Y+ +++GFCK+ +EAM+L E +
Sbjct: 309 LMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQ 368
Query: 154 VTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
+ NVVT L+ L EM G IT+N+++ A+C + KA+
Sbjct: 369 IFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAI 428
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
+LL + E G P ++ +LI L
Sbjct: 429 VLLTKIKEKGIQPDIFTYTVLINGL 453
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 18/129 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S +VG+++ A ++ + +D + P+VYT++ ++DGFCK G+ EA +L
Sbjct: 235 TYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVM 294
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+++ V +VV T+N+++ C V +++KA L +M + G P
Sbjct: 295 MKKNVKLDVV------------------TYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTP 336
Query: 210 SRTSHDMLI 218
S+ ++I
Sbjct: 337 DVWSYSIMI 345
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR+++A ++ ++ G P++YTYT++++GFC G +E + +L++ + G N +T
Sbjct: 456 VGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAIT 515
Query: 161 LIQLLQRL 168
L+ L
Sbjct: 516 YEILIHSL 523
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG + A ++L V ++P+V Y+ I+D CK N+A +L E + + ++ +VVT
Sbjct: 176 VGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVT 235
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ L R+ +I P TF+ +I C GK+ +A +L +M
Sbjct: 236 YSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVM 294
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +A V G + D +Y +++G C+VG + A++LL + V NVV
Sbjct: 142 GEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMY 201
Query: 162 IQLLQRLEMGHI-----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ + + P +T++++I C VGK+ A+ L M
Sbjct: 202 STIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMIS 261
Query: 205 HGKIPSRTSHDMLI 218
P+ + +LI
Sbjct: 262 DNINPNVYTFSILI 275
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 24/119 (20%)
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
K + L + + A + ++ +G+KPD T +M+ F ++G + + + +++
Sbjct: 63 KILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKK 122
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
G + P +TF +I+ LC G++HKAL Y H K+ ++
Sbjct: 123 G------------------YHPDAVTFTILIKGLCLKGEVHKAL------YFHDKVVAQ 157
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G ++ ++ + + G PD T+T ++ G C G ++A+ ++ + +G
Sbjct: 106 LGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQG------- 158
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
QL Q +++ +I LC VG+ A+ LL
Sbjct: 159 -FQLDQ----------VSYGTLINGLCRVGETKAAVQLL 186
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 34/213 (15%)
Query: 27 AESLDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
++ ++ K NP +D +K L E +++ + K + S+ ++ L+ M
Sbjct: 929 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 988
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
+ R++EA +M + + PDV TY ++ GFCK R E ME+
Sbjct: 989 D----------------RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 1032
Query: 146 LNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCG 188
E +RG+ N VT L+Q L EM G P +T+N ++ LC
Sbjct: 1033 FREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 1092
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
GK+ KA+++ + P+ +++++I+ +
Sbjct: 1093 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 1125
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A++ ++ G++P+V TYTA+++G C R ++A LL++ I++ +T NV+T
Sbjct: 308 RVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 367
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL + + M P +T++++I LC +I +A + LM
Sbjct: 368 ALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSK 427
Query: 206 GKIPSRTSHDMLI 218
G + S++ LI
Sbjct: 428 GCLADVVSYNTLI 440
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + PDV+T++A++D F K G+ EA +L +E ++R + ++VT
Sbjct: 919 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 978
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ M P +T+N +I+ C ++ + + + M +
Sbjct: 979 SSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ 1038
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + ++++LI+ L Q
Sbjct: 1039 RGLVGNTVTYNILIQGLFQ 1057
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M + + G DV +Y +++GFCK R + M+L E +RG+ N VT
Sbjct: 413 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 472
Query: 163 QLLQR-LEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLL 199
L+Q + G + P T+N ++ LC G++ KAL++
Sbjct: 473 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIF 526
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 44/219 (20%)
Query: 22 RSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA 81
R+ S+ DL+E L R D IK L + ID+F+ + K S+ DFN LL A
Sbjct: 145 RASSSVSGGDLRER---LSKTRLRD-IK---LNDAIDLFSDMVKSRPFPSIVDFNRLLSA 197
Query: 82 LVMLNEQDTAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPD 122
+V L + D + ++G +V A +L + G +PD
Sbjct: 198 IVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPD 257
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182
T ++++GFC+ R ++A+ L+++ + E+G+ P + +N +
Sbjct: 258 RVTIGSLVNGFCRRNRVSDAVSLVDKMV------------------EIGYKPDIVAYNAI 299
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +LC +++ A + G P+ ++ L+ L
Sbjct: 300 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGL 338
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 77/190 (40%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN--------HLM 100
K ++E +++F + + G + +N L+ L + D A + F ++M
Sbjct: 1022 KYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIM 1081
Query: 101 V-----------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G++E+A + ++ ++P +YTY +++G CK G+ + +L
Sbjct: 1082 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 1141
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+GV P + +N +I C G +A L M E G +P
Sbjct: 1142 SLKGVK------------------PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 1183
Query: 210 SRTSHDMLIK 219
+ ++ LI+
Sbjct: 1184 NSGCYNTLIR 1193
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VEEA+ + ++ GLKPD+ TYT +M G C G +E L + + G+ +N TL
Sbjct: 552 GKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 611
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L + + +F + K S+ +F+ LL A+ +N+ D +
Sbjct: 676 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQ--------------- 720
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------- 165
++N G+ + YTY+ +++ FC+ + A+ +L + ++ G N+VTL LL
Sbjct: 721 -MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 779
Query: 166 ----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q G+ P T+TFN +I L K +A+ L+ M G P ++
Sbjct: 780 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 839
Query: 216 MLIKKLDQQ 224
+++ L ++
Sbjct: 840 VVVNGLCKR 848
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A+ +L ++ L+P V Y I+DG CK ++A+ L E +G+ NVVT
Sbjct: 849 GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 908
Query: 162 IQLL------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL I R I TF+ +I A GK+ +A L M +
Sbjct: 909 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 968
Query: 205 HGKIPSRTSHDMLI 218
PS ++ LI
Sbjct: 969 RSIDPSIVTYSSLI 982
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 37/177 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
KA +++ + +F + + G + +N L+ + D A +FFS
Sbjct: 445 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 504
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ G +E+A + +++ + D+ TYT ++ G CK G+ EA L
Sbjct: 505 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 564
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+G+ P +T+ ++ LC G +H+ L M + G
Sbjct: 565 SLKGLK------------------PDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 603
>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
Length = 394
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 18/104 (17%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++AY +L ++ G PDV TYTAI+D FCKVGR +EA EL ERG +VV
Sbjct: 308 RLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVV--- 364
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+N +I+ C K+ +A+ ++ M G
Sbjct: 365 ---------------AYNILIRGYCRAAKVDEAIAMIEEMAGRG 393
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 33/180 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +K G ++ F L+ L LN + A++ F H M+ +
Sbjct: 1 LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIF--HQMI--------------DMK 44
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
+KPD + YT ++ CK+ + + A + ++ G + VT L+ L
Sbjct: 45 VKPDAFLYTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGH 104
Query: 169 ----EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
EM GH P +T+ V+ C G+I +AL L+ + G+ PS + + LI L
Sbjct: 105 QIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGL 164
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 35/205 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA----------------- 91
KA + + + + +K G + S S ++ L+ L + + A
Sbjct: 131 KAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMAAGDVQDVIVY 190
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
F S G+++EA + + + G PD +Y I+ CK R +EA EL+++A+E
Sbjct: 191 TSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAME 250
Query: 152 R----GV------------TQNVVTLIQLLQR-LEMG-HIPRTITFNNVIQALCGVGKIH 193
R GV ++ V +L+R LE G P +T++ VI LC ++
Sbjct: 251 RKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLD 310
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLI 218
A ++L M G +P ++ +I
Sbjct: 311 DAYIVLQKMRRAGCVPDVVTYTAII 335
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 19/118 (16%)
Query: 103 RVEEAYEMLMNVKNDGLK-PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
RVEEA +L + G + P V TY+A++DG CK R ++A +
Sbjct: 272 RVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAY----------------IV 315
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+Q ++R G +P +T+ +I A C VG++ +A L M+E G ++++LI+
Sbjct: 316 LQKMRR--AGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIR 371
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 20/132 (15%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + GR+++A ++ +K G P Y+ ++DG CK R EA EL A
Sbjct: 121 TYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMA 180
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
G + I + + I LC GK+ +A + M E G P
Sbjct: 181 --------------------AGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAP 220
Query: 210 SRTSHDMLIKKL 221
S++++I L
Sbjct: 221 DPVSYNVIIYSL 232
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 25/154 (16%)
Query: 10 TPFSVLLVDSPSRSPSAAESLDLKEN--------PRSLQAQRFVDKI-KASPLKERIDIF 60
P +LVD +S E+ + E P + +D + KA L + +
Sbjct: 257 VPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVL 316
Query: 61 NSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLK 120
+++ G V + ++ A VGR++EA E+ + G
Sbjct: 317 QKMRRAGCVPDVVTYTAIIDAFCK----------------VGRLDEARELFQRMHERGCA 360
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
DV Y ++ G+C+ + +EA+ ++ E RG+
Sbjct: 361 SDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 17/110 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE+++ + +K G+ PDVYTYT ++D FCK G +A +E G + NVVT
Sbjct: 467 KVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYT 526
Query: 163 ----------QLLQRLEMGH-------IPRTITFNNVIQALCGVGKIHKA 195
QL+Q ++ H P +T++ +I LC G+I KA
Sbjct: 527 ALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKA 576
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 21/155 (13%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128
VSD ++LL A++ + + + +G+++ A E+ + + G P V+TYT+
Sbjct: 624 VSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTS 683
Query: 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188
++D K GR + AM++L+E + NVV T+ +I L
Sbjct: 684 LIDRMFKDGRLDLAMKVLSEMLNDSCNPNVV------------------TYTAMIDGLSK 725
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
VG+I KAL LL LM E G P+ ++ LI L +
Sbjct: 726 VGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGK 760
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ A ++L + ND P+V TYTA++DG KVG +A+ LL+ E+G + NVVT
Sbjct: 692 GRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTY 751
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ L G P +T+ +I C G + +A LLL
Sbjct: 752 TALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLL 806
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-GRVEE 106
+K+ L + DIF+ + + ++ L+ L E A + + + G VE
Sbjct: 533 LKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVES 592
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
+ N + P+V TY A++DG CK + ++A ELL+ + G
Sbjct: 593 DFYFEGN-DTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCE----------- 640
Query: 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P I ++ +I C +GKI A + M + G +PS ++ LI ++
Sbjct: 641 -------PNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRM 688
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 21/190 (11%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
+A +++ +F +K+ G N V + L+ + + A +F VG
Sbjct: 463 CQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNV 522
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++ +A+++ + + P+ TY+A++DG CK G +A E+ +
Sbjct: 523 VTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEK 582
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
I G + NV + P +T+ +I LC K+ A LL M G
Sbjct: 583 LI--GTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCE 640
Query: 209 PSRTSHDMLI 218
P++ +D LI
Sbjct: 641 PNQIVYDALI 650
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 26/145 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-----VTQ 156
G + M+M +G P+ + +++ G+C G A +L N G V
Sbjct: 323 GWCKRIINMMMT---EGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAY 379
Query: 157 NV-------------VTLIQLLQRLEMGHIPRTITFN-----NVIQALCGVGKIHKALLL 198
N+ L+ L++++ + + N N + LCGVGK KA +
Sbjct: 380 NIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQI 439
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQ 223
L M G +P +++ +I L Q
Sbjct: 440 LKEMMRKGFVPDTSTYTKVITFLCQ 464
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 18/142 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVV 159
+G +++A+EML + G KP+VYT+TA++DG CK G + +A L + + NV
Sbjct: 311 IGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVY 370
Query: 160 TLIQL---------LQRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T + L R EM G +P T T+ +I C G +A L+ LM
Sbjct: 371 TYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLM 430
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+ G P+ +++ +I L ++
Sbjct: 431 GKEGFTPNIFTYNAIIDGLCKK 452
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 23/162 (14%)
Query: 80 MALVMLNEQ------DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
M L+ + EQ +T H G AYE++ + +G P+++TY AI+DG
Sbjct: 390 MLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGL 449
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR-----------------LEMGHIPRT 176
CK GR EA +LL ++ G+ + VT L+ ++G P
Sbjct: 450 CKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDM 509
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+N +I C K+ ++ L G +P++ ++ +I
Sbjct: 510 HTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMI 551
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 17/143 (11%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L +G V+ A ++ + + + PD +Y ++ G+C++GR ++ L + IERG +
Sbjct: 204 LALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDN 263
Query: 159 VTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
T ++ + ++MG P I F+++I LC +G I +A +L
Sbjct: 264 ATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEE 323
Query: 202 MYEHGKIPSRTSHDMLIKKLDQQ 224
M G P+ +H LI L ++
Sbjct: 324 MVRKGWKPNVYTHTALIDGLCKK 346
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++ A +L+ +K GL P+ TYT ++DG CK G A EL++ + G T N+
Sbjct: 384 KLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNI---- 439
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
T+N +I LC G+ +A LL + G + ++ +LI +
Sbjct: 440 --------------FTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFC 485
Query: 223 QQ 224
+Q
Sbjct: 486 RQ 487
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 80 MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
+ L +L ++T + G + A + +++ G KPD TY A++ G C +
Sbjct: 536 VGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKL 595
Query: 140 NEAMELLNEAIERGVTQNVVTLIQL----------------LQRLEMGHIPRTITFNNVI 183
+EA +L I+ G++ VT + L L+RLE RT+ N +I
Sbjct: 596 DEACQLYETMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLEKKLWIRTV--NTLI 653
Query: 184 QALCGVGKIHKALLLL 199
+ LC K+ A L
Sbjct: 654 RKLCSEKKVGVAALFF 669
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VEE+ ++ GL P TYT+++ G+C+ G + A++ ++ + G
Sbjct: 524 KVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCK------- 576
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
P +IT+ +I LC K+ +A L M ++G P + L +
Sbjct: 577 -----------PDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYC 625
Query: 223 QQ 224
+Q
Sbjct: 626 KQ 627
>gi|226492629|ref|NP_001143148.1| uncharacterized protein LOC100275629 [Zea mays]
gi|195615066|gb|ACG29363.1| hypothetical protein [Zea mays]
Length = 478
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 21/141 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+E+A + N+ KPDV +Y I+DG C+ GR EA+++ +E + + + VVT
Sbjct: 179 AAHIEDALRLFRNIP----KPDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVT 234
Query: 161 LIQLLQRL--------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L EMG P +T++++I LC G+ AL LL M
Sbjct: 235 YTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMV 294
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+ K+P+ ++ +I L ++
Sbjct: 295 KEKKLPNTITYSSVIDGLCKE 315
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA +M + + P V TYT ++ + G ++A+++ +E RGV+ N+VT
Sbjct: 211 GRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTY 270
Query: 162 IQLLQRLEMG-----------------HIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L G +P TIT+++VI LC + +A+ +L M
Sbjct: 271 SSLIDGLCKGGRATSALELLDRMVKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRL 330
Query: 205 HGKIP 209
G+ P
Sbjct: 331 QGRKP 335
>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 37/199 (18%)
Query: 44 FVDKIKASPLK----ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL 99
F IK LK E +D ++ + ++G +V +N L+ L AV F+
Sbjct: 319 FTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFN--- 375
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+M +N G P+V TY+A++DG+ K G + A E+ N I G NVV
Sbjct: 376 ---------QMEIN----GCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVV 422
Query: 160 ---TLIQLLQRLEMGHI--------------PRTITFNNVIQALCGVGKIHKALLLLFLM 202
++ +L R M + P T+TFN I+ LCG G++ A+ + M
Sbjct: 423 AYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQM 482
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P+ T+++ L+ L
Sbjct: 483 GNSGCFPNTTTYNELLDSL 501
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 105/231 (45%), Gaps = 41/231 (17%)
Query: 16 LVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKIKASP-LKERIDIFNSIKKDG 67
+VD R+ ++ L EN P ++ F+ + S + I +F+ + G
Sbjct: 427 MVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSG 486
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+ + +N+LL +L+ +D R EA+ ++ ++++ G++ ++ TY
Sbjct: 487 CFPNTTTYNELLDSLL----KDR------------RFGEAFGLVKDMEHRGIELNLVTYN 530
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMG 171
I+ G+C G EA+ELL + + RG + +T+ IQL+ RL G
Sbjct: 531 TIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAG 590
Query: 172 HI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P I + ++I +C + +A++ L M G P+ + ++L++ L
Sbjct: 591 KWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 18/147 (12%)
Query: 92 VKFFSNHLMVGRVEE-AYEML----MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
VK + NH++ ++E ++M+ N+K DG++P+V+TY ++ CK R + A +LL
Sbjct: 146 VKIY-NHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLL 204
Query: 147 NEAIERGVTQNVVTLIQLL------------QRLEMGHIPRTITFNNVIQALCGVGKIHK 194
E +G + V+ L+ + L M P +N +I +C +
Sbjct: 205 VEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEE 264
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A LL M G P+ S+ +I L
Sbjct: 265 AFQLLDEMMNKGIDPNVISYTTIINAL 291
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
EEA+++L + N G+ P+V +YT I++ G ++ +L + RG + N+ T L
Sbjct: 263 EEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSL 322
Query: 165 LQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
++ + G +P + +N ++ LC + A+ + M +G
Sbjct: 323 IKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGC 382
Query: 208 IPSRTSHDMLI 218
P+ ++ LI
Sbjct: 383 CPNVRTYSALI 393
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE + +L + G P+++T+T+++ GF G S+EA++ + I GV NVV
Sbjct: 295 GNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAY 354
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ + ++E+ G P T++ +I G + A + M
Sbjct: 355 NALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMIT 414
Query: 205 HGKIPSRTSHDMLIKKL 221
HG P+ ++ ++ L
Sbjct: 415 HGCHPNVVAYTCMVDVL 431
>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
Length = 694
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 33/167 (19%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+D+ N +K G VS + L+ L V +++EA +L + +
Sbjct: 429 LDLLNEMKNKGMELDVSLYGTLIWGLCK----------------VQKLDEAKSLLHKMDD 472
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------- 168
GL+P+ YT IMD F K G+ +EA+ LL++ + G+ NVVT L+ L
Sbjct: 473 CGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYE 532
Query: 169 ---------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
E+G P + +I C +G + KA+ L+ M + G
Sbjct: 533 AISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKG 579
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 18/105 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA ++ ++ G+ P+ +TYT+++DG CK GR ++A+ LL+E + +G+
Sbjct: 318 GLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGL------- 370
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+P +T+ ++ LC GK+ A +L LM G
Sbjct: 371 -----------VPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAG 404
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G + EA + + +K G PDV TY +++DG+ K G E L++E + G +VVT
Sbjct: 213 GELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTY 272
Query: 161 --LIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI + +G + +T + + A C G + +A+ L M
Sbjct: 273 NALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRV 332
Query: 205 HGKIPSRTSHDMLI 218
G +P+ ++ L+
Sbjct: 333 RGMMPNEFTYTSLV 346
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H M E A ++L +KN G++ DV Y ++ G CKV + +EA LL++ + G+
Sbjct: 418 GHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRP 477
Query: 157 NVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
N V + LL ++ + G P +T+ +I LC G I++A+
Sbjct: 478 NTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHF 537
Query: 200 FLMYEHGKIPSRTSHDMLI 218
M E G P+ + LI
Sbjct: 538 DKMRELGLDPNVQVYTTLI 556
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
KA + E I F+ +++ G + +V + L+ + AV +
Sbjct: 525 CKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDK 584
Query: 97 --------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
H+ G ++ A+ + + GL+ D+Y YT + GFC + EA +L+E
Sbjct: 585 VVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSE 644
Query: 149 AIERGVTQNVVTLIQLLQRLE-MGHIPRTITFNNVIQAL 186
I G+T + L+++ + +G++ + N ++++
Sbjct: 645 MIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMESV 683
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 52/190 (27%)
Query: 84 MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR----- 138
M+ + T GR+++A +L + + GL P+V TYT ++DG CK G+
Sbjct: 335 MMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVAD 394
Query: 139 ------------------------------SNEAMELLNEAIERGVTQNVV---TLI--- 162
S A++LLNE +G+ +V TLI
Sbjct: 395 DVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGL 454
Query: 163 ----------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
LL ++ + G P T+ + ++ A GK +A+ LL + + G P+
Sbjct: 455 CKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNV 514
Query: 212 TSHDMLIKKL 221
++ LI L
Sbjct: 515 VTYCALIDGL 524
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++ EA + ++ G KPDV Y I+D CK N+AME L+E ++RG+ N VT
Sbjct: 351 LGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVT 410
Query: 161 LIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+L +G + P T+TF+ ++ LC G + +A + M
Sbjct: 411 YSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMT 470
Query: 204 EHGKIPSRTSHDMLI 218
E G P+ +++ L+
Sbjct: 471 EKGVEPNIYTYNALM 485
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 34/169 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+K ++++N + + G V +N L+ L + AV F
Sbjct: 179 IKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKK--------------- 223
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
++ +G KP+V TY I+D CK N+AM+ L+E + RG+
Sbjct: 224 -MEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIP----------------- 265
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P IT+N+++ LC +G++++A L M ++G P +++++I L
Sbjct: 266 -PDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSL 313
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G V EA + + G++P++YTY A+M+G+C + NEA ++ + +G ++ +
Sbjct: 457 GMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSY 516
Query: 161 --LIQ-------------LLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI LL ++ + + P T+T+N +++ LC VG++ A L M
Sbjct: 517 NILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCS 576
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P+ ++ +L+ L +
Sbjct: 577 SGMLPTLMTYSILLNGLCKH 596
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 40/200 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR------------- 103
+ +F ++++G +V +N ++ +L + A+ F S MVGR
Sbjct: 218 VHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSE--MVGRGIPPDAITYNSIV 275
Query: 104 --------VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ EA + ++ +G KPDV TY I+D K N+A + L+E +++G+
Sbjct: 276 HGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIP 335
Query: 156 QNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLL 198
+VVT I+L +++E G P + +N +I +LC ++ A+
Sbjct: 336 PDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEF 395
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
L M + G P+ ++ ++
Sbjct: 396 LSEMVDRGIPPNAVTYSTIL 415
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 42/71 (59%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR+ +A E+ + + G+ P + TY+ +++G CK G +EA++L E+ + +++
Sbjct: 561 VGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIIL 620
Query: 161 LIQLLQRLEMG 171
L++ + +G
Sbjct: 621 YTILIEGMFIG 631
>gi|473874|gb|AAA17740.1| a membrane-associated salt-inducible protein [Nicotiana tabacum]
Length = 435
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 36/184 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-------- 100
KA +++ +D+F+ +++ G +V +N L++ LV + D AV+ L+
Sbjct: 78 KAGAIRKALDVFDMMRRSGCIPTVQTYNALILGLVEKRQMDKAVEVVDEMLLAGIRPNER 137
Query: 101 -----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+G +A+E +K++GL+ DVYTY A++ CK GR A+ + E
Sbjct: 138 TYTTIMDGYASLGDTGKAFEYFSRIKDEGLELDVYTYEALLKACCKSGRIESALAVTKEM 197
Query: 150 IERGVTQN----------------VVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKI 192
+ + +N V L+Q++ + G P T+ + + A C G +
Sbjct: 198 NAKNIPRNTFVYNILIDGWARRSDVWEAADLMQQMRQEGVQPDIHTYTSFVNACCKAGDM 257
Query: 193 HKAL 196
KA+
Sbjct: 258 QKAM 261
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A+ + +V DGLKPDV Y I+ FC +G + A+ ++ Q
Sbjct: 15 AFAIFEDVIRDGLKPDVVLYNNIIRAFCGMGNMDRALRIVE------------------Q 56
Query: 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ H P + TF +I A G I KAL + +M G IP+ +++ LI
Sbjct: 57 MKKERHRPTSRTFMPIIHAFAKAGAIRKALDVFDMMRRSGCIPTVQTYNALI 108
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK--------------FFSNHLMVGR 103
+ F+ IK +G V + LL A ++A+ F N L+ G
Sbjct: 157 EYFSRIKDEGLELDVYTYEALLKACCKSGRIESALAVTKEMNAKNIPRNTFVYNILIDGW 216
Query: 104 -----VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
V EA +++ ++ +G++PD++TYT+ ++ CK G +AM + E
Sbjct: 217 ARRSDVWEAADLMQQMRQEGVQPDIHTYTSFVNACCKAGDMQKAMNTIQE 266
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
+KA +E +++ ++K G +N ++ + + A + +G
Sbjct: 456 VKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTV 515
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
R++EAY + K++G++ + Y++++DGF KVGR +EA ++ E
Sbjct: 516 VTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEE 575
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
+++G+T NV T LL L ++ P IT+ +I LC V K
Sbjct: 576 MMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRK 635
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+KA + M + G P+ ++ +I L
Sbjct: 636 FNKAFVFWQEMQKQGLKPNTITYTAMISGL 665
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRV+EAY ++ + GL P+VYT+ ++DG K NEA+ + T N +T
Sbjct: 563 VGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQIT 622
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L + G P TIT+ +I L G + +A L
Sbjct: 623 YCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFR 682
Query: 204 EHGKIPSRTSHDMLIKKL 221
G IP S++ +I+ L
Sbjct: 683 ASGGIPDSASYNAMIEGL 700
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+V+ A++ +K +GL PD TYT++M CK R +EA+E+ + + QN
Sbjct: 144 VGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQ-----MEQNR-- 196
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+P +N +I GK +A LL G IPS +++ ++
Sbjct: 197 -----------QVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTC 245
Query: 221 LDQQ 224
L ++
Sbjct: 246 LGKK 249
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 35/174 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA+ L E ++IF ++++ +N ++M + G+ +EA
Sbjct: 177 CKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMG----------------YGSAGKFDEA 220
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y +L + G P V Y I+ K G++++A+ + E ++R
Sbjct: 221 YSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEE----------------MKR 264
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
M ++P T+N +I LC G + A + M E G P+ + +++I +L
Sbjct: 265 DAMPNLP---TYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRL 315
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-- 154
N R E+ ++M + G PD+ MD K G + + L E RG
Sbjct: 384 NFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLP 443
Query: 155 -TQNVVTLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
T++ LI L + + G + T +N VI C GK++KA LL
Sbjct: 444 DTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLL 503
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M G P+ ++ ++ L
Sbjct: 504 EEMKTMGHHPTVVTYGSVVDGL 525
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T V+ ++ + ++ EA+++L +++ +P YT ++ +VG S+ + L N+
Sbjct: 28 TCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQM 87
Query: 150 IERGVTQNV---VTLIQLLQRLEMGHIPRTIT----------------FNNVIQALCGVG 190
E G NV TLI++ R G + ++ +N I VG
Sbjct: 88 QELGYEVNVHLLTTLIRVFSR--EGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVG 145
Query: 191 KIHKALLLLFLMYEHGKIPSRTSH 214
K+ A M +G +P ++
Sbjct: 146 KVDMAWKFFHEMKANGLVPDDVTY 169
>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 770
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VEE + +L ++ GL+ DV+ Y+A++ GFC G EL NE + + VT NVVT
Sbjct: 213 GDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTY 272
Query: 162 IQLLQRL----------------------------------------------------E 169
L+ L +
Sbjct: 273 SCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVK 332
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G P +T+N +I LC G++ AL +L M + GK P ++ L+K L
Sbjct: 333 RGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGL 384
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 16/117 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++A +L + G KPDV TY+ ++ G C VG+ +EA++LLN
Sbjct: 353 GRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLN-------------- 398
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
LL E P FN VIQ LC ++ A + + M E G + ++++LI
Sbjct: 399 --LLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILI 453
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 36/173 (20%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------------NHLMVG-R 103
I K G + +V +FN LL + A+ F N L G R
Sbjct: 120 IMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKR 179
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA E+ +K KP+ T++A++DGFCK G E LL E + G+ +V
Sbjct: 180 LVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSA 239
Query: 164 LL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + L P +T++ ++ ALC K +A +L
Sbjct: 240 LISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQML 292
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 43/241 (17%)
Query: 21 SRSPSAAESLDL----KENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDF 75
R+ A + LDL E P ++ ++ + K + + + I ++ K G V +
Sbjct: 318 GRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTY 377
Query: 76 NDLLMALVMLNEQDTAVKF---------------FSNHLMVG------RVEEAYEMLMNV 114
+ L+ L + + D AV F+ +L++ R+ A + +
Sbjct: 378 STLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTM 437
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQRLEM- 170
G ++ TY ++DG+ G+ +A+EL +A++ G++ N T LI L +++M
Sbjct: 438 VERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQML 497
Query: 171 -------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
G P +N ++ +LC + +A L M P S +++
Sbjct: 498 SIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNII 557
Query: 218 I 218
I
Sbjct: 558 I 558
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+L G++ +A E+ + + G+ P+ TYT +++G CK+ + A L N+ G
Sbjct: 456 YLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPT 515
Query: 158 VVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V L+ L EM H P ++FN +I G + A LL
Sbjct: 516 VSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLL 575
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M +P + +LI +
Sbjct: 576 EMLNMNLVPDNITFSILINRF 596
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL-----NEAIERGVTQN---- 157
A+ +L + G +VY + ++ GFC+ G S++AM+L N I V+ N
Sbjct: 113 AFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVIN 172
Query: 158 -------VVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+V +L + ++ G P ++TF+ +I C G + + LL M + G
Sbjct: 173 GLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMG 229
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 37/160 (23%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-----SNH--------------L 99
+FN + GT +VS++N L+ +L + + A F +NH L
Sbjct: 503 LFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTL 562
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G VE A E+L+ + N L PD T++ +++ F K+G+ +EA L ER V+
Sbjct: 563 KAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLY----ERMVS---- 614
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
GH+P + F+++++ GK K + +L
Sbjct: 615 ----------CGHVPDAVLFDSLLKGYSLKGKTEKVVSML 644
>gi|46518477|gb|AAS99720.1| At2g19280 [Arabidopsis thaliana]
gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 693
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 46/250 (18%)
Query: 3 ISAANSPT-PFSVLLVDSPSR--SPSAAESL--DLKENPRSLQAQRFVDKI----KASPL 53
+ + N P+ S +L+ + SR S S AES+ ++K L + + + K L
Sbjct: 435 LKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQL 494
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV--------- 104
+ ++ + ++ G + V+ +N L+ ++V+ D A + S + G V
Sbjct: 495 NKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDV 554
Query: 105 ----------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+EA+ + + + +KPDV T +A++ G+CK R +A+ L N+ ++ G+
Sbjct: 555 IGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGL 614
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
P + +N +I C VG I KA L+ LM + G +P+ ++H
Sbjct: 615 K------------------PDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTH 656
Query: 215 DMLIKKLDQQ 224
L+ L+ +
Sbjct: 657 HALVLGLEGK 666
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 49/174 (28%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAI------------------------ 129
F + G ++ +E+LM +K+ G++PD+ +T
Sbjct: 277 FIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFG 336
Query: 130 -----------MDGFCKVGRSNEAMELL-------NEAIERGVTQNVVTLIQLLQR---- 167
+DGFCKVG+ EA++L+ N + N+ + +L+
Sbjct: 337 ISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIF 396
Query: 168 ---LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
E+G +P + + +I C +G+ KA + + G PS T+ +LI
Sbjct: 397 QEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILI 450
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 44/217 (20%)
Query: 44 FVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK--------- 93
F+DK+ KA LKE + +K G + + ++ + + + A+K
Sbjct: 312 FIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRP 371
Query: 94 -------FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
F SN G + A + + GL PD YT ++DG+C +GR+++A +
Sbjct: 372 NIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYF 431
Query: 147 NEAIERGVTQNVVT---LIQLLQRLEMGHIP----------------RTITFNNVIQALC 187
++ G ++ T LI R G I +T+NN++
Sbjct: 432 GALLKSGNPPSLTTSTILIGACSRF--GSISDAESVFRNMKTEGLKLDVVTYNNLMH--- 486
Query: 188 GVGKIH---KALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G GK H K L+ M G P ++++LI +
Sbjct: 487 GYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSM 523
>gi|15224753|ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334184304|ref|NP_001189552.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g19280
gi|3135258|gb|AAC16458.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251769|gb|AEC06863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251770|gb|AEC06864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 693
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 46/250 (18%)
Query: 3 ISAANSPT-PFSVLLVDSPSR--SPSAAESL--DLKENPRSLQAQRFVDKI----KASPL 53
+ + N P+ S +L+ + SR S S AES+ ++K L + + + K L
Sbjct: 435 LKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQL 494
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV--------- 104
+ ++ + ++ G + V+ +N L+ ++V+ D A + S + G V
Sbjct: 495 NKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDV 554
Query: 105 ----------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+EA+ + + + +KPDV T +A++ G+CK R +A+ L N+ ++ G+
Sbjct: 555 IGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGL 614
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
P + +N +I C VG I KA L+ LM + G +P+ ++H
Sbjct: 615 K------------------PDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTH 656
Query: 215 DMLIKKLDQQ 224
L+ L+ +
Sbjct: 657 HALVLGLEGK 666
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 49/174 (28%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAI------------------------ 129
F + G ++ +E+LM +K+ G++PD+ +T
Sbjct: 277 FIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFG 336
Query: 130 -----------MDGFCKVGRSNEAMELL-------NEAIERGVTQNVVTLIQLLQR---- 167
+DGFCKVG+ EA++L+ N + N+ + +L+
Sbjct: 337 ISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIF 396
Query: 168 ---LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
E+G +P + + +I C +G+ KA + + G PS T+ +LI
Sbjct: 397 QEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILI 450
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 44/217 (20%)
Query: 44 FVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK--------- 93
F+DK+ KA LKE + +K G + + ++ + + + A+K
Sbjct: 312 FIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRP 371
Query: 94 -------FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
F SN G + A + + GL PD YT ++DG+C +GR+++A +
Sbjct: 372 NIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYF 431
Query: 147 NEAIERGVTQNVVT---LIQLLQRLEMGHIP----------------RTITFNNVIQALC 187
++ G ++ T LI R G I +T+NN++
Sbjct: 432 GALLKSGNPPSLTTSTILIGACSRF--GSISDAESVFRNMKTEGLKLDVVTYNNLMH--- 486
Query: 188 GVGKIH---KALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G GK H K L+ M G P ++++LI +
Sbjct: 487 GYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSM 523
>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
Length = 793
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 18/124 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G+V+EA+++ ++ G+ PDV TY ++D K RS++A+ LL E E+GV ++V
Sbjct: 327 AGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLV 386
Query: 160 T-------------LIQLLQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L + L RLEM G P IT+N +I A C G + KA +L+ M
Sbjct: 387 THNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEM 446
Query: 203 YEHG 206
G
Sbjct: 447 VRSG 450
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++EEA L + +GL PDV TY ++D CK G +A L++E + G+ + TL
Sbjct: 399 GQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTL 458
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L + G +P +++ V+ A K AL L M +
Sbjct: 459 NTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIK 518
Query: 205 HGKIPSRTSHDMLIKKL 221
PS ++++ LIK L
Sbjct: 519 RKLTPSISTYNTLIKGL 535
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 34/184 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E + +KK+G + + +N L+ A L G +++A +++
Sbjct: 260 LGEARTLLARMKKEGIVPTRATYNTLVSAYARL----------------GWIKQATDVVE 303
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVTL---------- 161
+ G +PD++TY + G C+ G+ +EA +L +E + G V+ +VVT
Sbjct: 304 AMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKC 363
Query: 162 ------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+ LL+ + E G +T N +++ LC G++ +AL L +M E G P ++
Sbjct: 364 QRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITY 423
Query: 215 DMLI 218
+ LI
Sbjct: 424 NTLI 427
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A++ + + KPDV T +M+G C GR +AM+L +E+G +V+T
Sbjct: 574 GDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITY 633
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+Q L +M G P T+N ++ AL G+ +A +L + E
Sbjct: 634 NTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNE 693
Query: 205 HGKIPSR 211
GK+ R
Sbjct: 694 SGKLYGR 700
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 34/187 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L++ + +F S + G V +N L+ AL N+ DTA++FF++ M
Sbjct: 611 LEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFAD--------------M 656
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---VVTLIQLLQRLE 169
V+ GL+PDV+TY ++ + GRS EA ++L++ E G ++ ++ +E
Sbjct: 657 EVR--GLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVE 714
Query: 170 MGHIPRTI---------------TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
G P ++N I+ LC G++ +A +L M + G +++
Sbjct: 715 TGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTY 774
Query: 215 DMLIKKL 221
L++ L
Sbjct: 775 ITLMEGL 781
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++ EA + L + GL PD TY I+ +CK G +A + N+ +E +VVT
Sbjct: 538 MGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVT 597
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E G IT+N +IQALC + AL M
Sbjct: 598 CNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADME 657
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
G P ++++L+ L +
Sbjct: 658 VRGLQPDVFTYNVLLSALSE 677
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 18/140 (12%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H G + +A L ++ GL PD TY +++ C+ G EA LL + G+
Sbjct: 218 THCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVP 277
Query: 157 NVV---TLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
TL+ RL G P T+N + LC GK+ +A L
Sbjct: 278 TRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLK 337
Query: 200 FLMYEHGKI-PSRTSHDMLI 218
M + G + P +++ L+
Sbjct: 338 DEMEQLGIVSPDVVTYNTLV 357
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQNVV-----------TLI 162
L P + TY ++ G +G+ EA++ LNE +E G+ T N++
Sbjct: 521 LTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAF 580
Query: 163 QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
Q ++ E P +T N ++ LC G++ KA+ L E GK +++ LI+ L
Sbjct: 581 QFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQAL 640
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+ A E+L + G+ P+V TY+ ++DGFCKV R +EA +LL + + +G+ VVT
Sbjct: 163 GKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTY 222
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L + P +T+N +++ALC ++ A L M
Sbjct: 223 NILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIA 282
Query: 205 HGKIPSRTSHDML 217
G P ++D L
Sbjct: 283 KGCPPDAITYDTL 295
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+E AYE+ + G P +Y ++DGFCK A ++ ++ + NVVT
Sbjct: 94 RIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYT 153
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L + G P T++ +I C V ++ +A LL M
Sbjct: 154 TLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ 213
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ ++++L+ L
Sbjct: 214 GIAPTVVTYNILLNSL 229
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++A + + G+KPD + Y ++ G C+ + EA L + +++ + NVV
Sbjct: 24 RIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVV--- 80
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+N +I LC +I A L M G +P+ S++ LI
Sbjct: 81 ---------------TYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 121
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V RV+EA+++L + G+ P V TY +++ C+ + +A +L +R VVT
Sbjct: 197 VRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVT 256
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLL 199
LL+ L EM G P IT++ + L GK+H+A L+
Sbjct: 257 YNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELM 312
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 39/185 (21%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
KA +E + +FNS+K G + SV FN LL+ L+ + A F
Sbjct: 168 KAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDT 227
Query: 97 ---NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
N L+ G V+E + + PD+ TY ++DG C+ G+ N A ++N
Sbjct: 228 YTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNG 287
Query: 149 AIERGVTQN--VVTLIQLLQRLEMGH-----------------IPRTITFNNVIQALCGV 189
+++ N VVT L++ M H P IT+N +I+ LC V
Sbjct: 288 MVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEV 347
Query: 190 GKIHK 194
KI K
Sbjct: 348 QKIDK 352
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 19/112 (16%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H G E YE+L+ + PD+ TY +++DG + G A + L + I+
Sbjct: 490 GHCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKS---- 545
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
H+P T TF++++ L G H++ + LM E GKI
Sbjct: 546 --------------SHVPETSTFHSILARLLAKGCAHESARFIMLMLE-GKI 582
>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 492
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 18/135 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++EA+E + +K + DV +YT ++ GF + G +A + +E ++ GV NV T
Sbjct: 255 QIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYN 314
Query: 163 QLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+Q E P +TFN VI+ LC VG + +AL + M E
Sbjct: 315 ALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGE 374
Query: 205 HGKIPSRTSHDMLIK 219
HG S +++++I+
Sbjct: 375 HGLRASVQTYNVVIR 389
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 39/211 (18%)
Query: 28 ESLDLKENPRSLQ--AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
SL L +P++L A+R+ K + F S+ + G + + FN LL L
Sbjct: 128 RSLRLGPSPKTLAILAERYASIGKPH---RAVRTFLSMHEHGLHQDLHSFNTLLDILCKS 184
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
N RVE A+++L +K+ +PD +Y + +G+C R+ A+ +
Sbjct: 185 N----------------RVETAHDLLRTLKSR-FRPDTVSYNILANGYCLKKRTPMALRV 227
Query: 146 LNEAIERGVTQNVVTLIQLLQ--------------RLEMGHIP---RTITFNNVIQALCG 188
L E ++RG+ +VT +L+ LEM +++ VI
Sbjct: 228 LKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGE 287
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G++ KA + M + G P+ +++ LI+
Sbjct: 288 AGEVKKAKRVFDEMVKEGVAPNVATYNALIQ 318
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 79/203 (38%), Gaps = 40/203 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-------- 100
+A +K+ +F+ + K+G +V+ +N L+ + AV F +
Sbjct: 287 EAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNV 346
Query: 101 ------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME---- 144
VG +E A + + GL+ V TY ++ FC G + +E
Sbjct: 347 VTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGK 406
Query: 145 ---------------LLNEAIERGVTQNVVTLIQLL-QRLEMGHIPRTITFNNVIQALCG 188
L++ R ++++V +LL + +E G +PR TFN V+ L
Sbjct: 407 MGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVI 466
Query: 189 VGKIHKALLLLFLMYEHGKIPSR 211
G A +L + G++ R
Sbjct: 467 TGNQDFAKDILRMQSRCGRVVRR 489
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+EEA +M+ ++ G++PDV TY ++G+C+ G + +A+ L +E +E+ + V T
Sbjct: 372 RIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYT 431
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + ++ G +P I FN +I C G I +A LL M
Sbjct: 432 SLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNA 491
Query: 206 GKIPSRTSHDMLIK 219
+P + + L++
Sbjct: 492 KVVPDEVTFNTLMQ 505
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H + G ++ A+++L + N + PD T+ +M G+C+ + EA +LL+E ERG+ +
Sbjct: 472 HCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPD 531
Query: 158 VVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
++ L+ + L +G P +T+N +IQ +G+ A LL
Sbjct: 532 HISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLR 591
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G P +++ +I+ +
Sbjct: 592 EMQSKGITPDDSTYLYVIEAM 612
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F S R+EEA +L + GL P+ TY A++DG C G ++A +E + RG
Sbjct: 293 FISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRG 352
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ +V T L+ L E G P +T+N I C G KAL
Sbjct: 353 IVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKAL 412
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
L M E P+ ++ LI
Sbjct: 413 SLFDEMVEKNIRPTVETYTSLI 434
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ + + G+ E A ++ +K+ LKPD YTY + + CK R EA GV
Sbjct: 260 NGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEA---------SGV- 309
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
L + LE G +P +T+N +I C G + KA M G + S +++
Sbjct: 310 --------LCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYN 361
Query: 216 MLIKKL 221
+LI L
Sbjct: 362 LLIHAL 367
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-- 153
+ + G ++A + + ++P V TYT+++D F K R +EA E ++I+ G
Sbjct: 400 NGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGML 459
Query: 154 --------------VTQNVVTLIQLLQRLEMGH-IPRTITFNNVIQALCGVGKIHKALLL 198
V N+ QLL+ ++ +P +TFN ++Q C K+ +A L
Sbjct: 460 PDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKL 519
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
L M E G P S++ LI
Sbjct: 520 LDEMKERGIKPDHISYNTLI 539
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 41/68 (60%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A E+ + + G P + TY A++ G+ K+G ++ A ELL E +G+T + T
Sbjct: 546 GDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTY 605
Query: 162 IQLLQRLE 169
+ +++ ++
Sbjct: 606 LYVIEAMK 613
>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
turbinata]
Length = 413
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + +G
Sbjct: 146 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLANG 189
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 190 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAM 249
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 250 EIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 306
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD +TYT ++DG CK G + A + I+ + + V
Sbjct: 278 GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAY 337
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + K LL M
Sbjct: 338 TALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQR 397
Query: 205 HGKIPSRTSHDMLI 218
+G PS ++++L+
Sbjct: 398 NGHAPSVVTYNVLM 411
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 125 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 184
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G IP +TF +I C G+
Sbjct: 185 MLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGR 244
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ A+ + M +P +++ LI L
Sbjct: 245 VDLAMEIYKRMLSQSLLPDLITYNTLIYGL 274
>gi|242047058|ref|XP_002461275.1| hypothetical protein SORBIDRAFT_02g043930 [Sorghum bicolor]
gi|241924652|gb|EER97796.1| hypothetical protein SORBIDRAFT_02g043930 [Sorghum bicolor]
Length = 334
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 32/219 (14%)
Query: 1 LDISAANSPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIF 60
L +SA ++ P SVL ++ + L E+ R+++A+R D + A+ + F
Sbjct: 83 LMLSATSAGVPPSVLCYNTLLNA--------LAEDGRAVEARRVFDGMLAAGVAPNASSF 134
Query: 61 NSIKKDGTNWSVSDFN---DLLMALV---MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
N + K W ++F+ D + A+ ++ + T + G+++EA+ +L +
Sbjct: 135 NILVKL-YAWRTAEFHLAYDEIHAMRRHGLVPDVGTFSTLVTGLCRAGKLDEAWGVLDWM 193
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-------------- 160
+G +P V+TYT I+ G+C GR EA L+ E G N VT
Sbjct: 194 LQEGCRPMVHTYTPIVQGYCCQGRIEEATNLIGFMEEAGCPPNAVTYNVLIRALCDDARF 253
Query: 161 --LIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKAL 196
+ Q+L +E GH P T+T+N + AL G +AL
Sbjct: 254 DEVKQVLAEIESKGHKPSTVTYNIYMDALSKKGMAKEAL 292
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 34/213 (15%)
Query: 27 AESLDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
++ ++ K NP +D +K L E +++ + K + S+ ++ L+ M
Sbjct: 110 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 169
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
+ R++EA +M + + PDV TY ++ GFCK R E ME+
Sbjct: 170 D----------------RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 213
Query: 146 LNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCG 188
E +RG+ N VT L+Q L EM G P +T+N ++ LC
Sbjct: 214 FREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 273
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
GK+ KA+++ + P+ +++++I+ +
Sbjct: 274 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 306
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + PDV+T++A++D F K G+ EA +L +E ++R + ++VT
Sbjct: 100 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 159
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ M P +T+N +I+ C ++ + + + M +
Sbjct: 160 SSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ 219
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + ++++LI+ L Q
Sbjct: 220 RGLVGNTVTYNILIQGLFQ 238
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 37/191 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN--------HL 99
K ++E +++F + + G + +N L+ L + D A + F ++
Sbjct: 202 CKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNI 261
Query: 100 MV-----------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
M G++E+A + ++ ++P +YTY +++G CK G+ + +L
Sbjct: 262 MTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN 321
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+GV P + +N +I C G +A L M E G +
Sbjct: 322 LSLKGVK------------------PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTL 363
Query: 209 PSRTSHDMLIK 219
P+ ++ LI+
Sbjct: 364 PNSGCYNTLIR 374
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A+ +L ++ L+P V Y I+DG CK ++A+ L E +G+ NVVT
Sbjct: 30 GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 89
Query: 162 IQLL------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL I R I TF+ +I A GK+ +A L M +
Sbjct: 90 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 149
Query: 205 HGKIPSRTSHDMLI 218
PS ++ LI
Sbjct: 150 RSIDPSIVTYSSLI 163
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNE----AIERGV------------TQNVVTL 161
G +PD+ TY +++G CK G ++ A LLN+ +E GV +++
Sbjct: 11 GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 70
Query: 162 IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L + +E I P +T++++I LC G+ A LL M E P + LI
Sbjct: 71 LNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALI 128
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E + N + + G S+ +N L+ + H ++GR+EEA +L
Sbjct: 174 LDEAYRVLNEMTRSGFIPSIVTYNALI----------------NGHCVLGRMEEAIGLLQ 217
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---- 168
++ G+ PDV +Y+ I+ GF + + A ++ E I + V + VT L+Q L
Sbjct: 218 DMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQR 277
Query: 169 ----------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
EM I P T+ +I A C G ++KAL L M + G +P +++
Sbjct: 278 RLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYN 337
Query: 216 MLIKKLDQQ 224
+LI L++Q
Sbjct: 338 VLINGLNKQ 346
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 17/125 (13%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----- 168
++ +G P+V TY ++DG+CK+ R++EA L +G+ N++T ++ L
Sbjct: 9 MERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGR 68
Query: 169 ---------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
EM G++P +T+N ++ C G H+AL+L M +G P+ ++
Sbjct: 69 LKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTS 128
Query: 217 LIKKL 221
LI +
Sbjct: 129 LINSM 133
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 82/185 (44%), Gaps = 37/185 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------HLMV---- 101
F ++++G +V +N ++ L D A F + ++++
Sbjct: 5 FFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLC 64
Query: 102 --GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GR++E E+L+ + G PD TY +++G+CK G ++A+ L E + G++ NVV
Sbjct: 65 RDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVV 124
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T+ ++I ++C G +++A+ M+ G P+ ++ +I
Sbjct: 125 ------------------TYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIIN 166
Query: 220 KLDQQ 224
QQ
Sbjct: 167 GFAQQ 171
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA +M + L PD +TYT +++ +CK G N+A+ L +E I++G
Sbjct: 278 RLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGF-------- 329
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+P +T+N +I L + +A LL ++ IPS +++ LI+
Sbjct: 330 ----------LPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIE 376
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A E + GL P+ TYT I++GF + G +EA +LNE G
Sbjct: 137 GNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGF------- 189
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IP +T+N +I C +G++ +A+ LL M G +P S+ +I
Sbjct: 190 -----------IPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTII 235
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
E +AV M G ++EA ++ ++ N KP+ Y I+ G C++G +A +L
Sbjct: 382 EFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLY 441
Query: 147 NEAIERGVTQNVVTLIQLLQRL 168
E + + VT++ L++ L
Sbjct: 442 KEMVHVDFVPHTVTVLALVKAL 463
>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 58/221 (26%)
Query: 40 QAQRFVDKIKASPL-------------------KERIDIFNSIKKDGTNWSVSDFNDLLM 80
QAQ F DK+ + E +F +++ G V +N LL
Sbjct: 176 QAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLE 235
Query: 81 ALVMLNEQDTAVKFF----SNHLM---------------VGRVEEAYEMLMNVKNDGLKP 121
AL D A K F SN L V + A+++L ++ L P
Sbjct: 236 ALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVP 295
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181
+V+TY I+ CK + +EA +LL+E IERGV+ ++ + N
Sbjct: 296 NVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSY-------------------N 336
Query: 182 VIQAL-CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IQA C +++KAL L+ M + +P R +++M++K L
Sbjct: 337 AIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKML 377
>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
Length = 1302
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + H G AYE++ + ++G P++YTY A +D CK R+ EA ELLN+
Sbjct: 995 NTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNK 1054
Query: 149 AIERGVTQNVVTLIQLLQ-RLEMGHIPRTITF---------------NNV-IQALCGVGK 191
A G+ + VT L+Q + + I + + F NN+ I A C K
Sbjct: 1055 AFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKK 1114
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ ++ L L+ G IP++ ++ +I
Sbjct: 1115 MKESERLFQLVVSLGLIPTKETYTSMI 1141
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NVVT 160
G +++A+EML + +G KP+VYT+TA++DG CK G + +A L + + + NV T
Sbjct: 902 GSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHT 961
Query: 161 LIQL---------LQRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ L R EM G P T+ +I C G +A L+ LM
Sbjct: 962 YTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMG 1021
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ G +P+ +++ I L
Sbjct: 1022 DEGFMPNIYTYNAAIDSL 1039
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G E+A+ + + V++D KP+V+TYT+++ G+CK + N A L + E+G+ NV T
Sbjct: 937 GWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNT 996
Query: 161 LIQLL----------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + E+ G +P T+N I +LC + +A LL +
Sbjct: 997 YTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAF 1056
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G ++ +LI++ +Q
Sbjct: 1057 SCGLEADGVTYTILIQEQCKQ 1077
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMG----- 171
G KP++ +T+++DG CK G +A E+L E + G NV T L+ L + G
Sbjct: 883 GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKA 942
Query: 172 ------------HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ P T+ ++I C K+++A +L M E G P+ ++ LI
Sbjct: 943 FRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLI 1001
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 78 LLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
L+++L ++ ++T S + G ++ A + N+K G PD +TY +++ G CK
Sbjct: 1124 LVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKS 1183
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQL 164
+EA +L I+RG++ VT + L
Sbjct: 1184 MVDEACKLYEAMIDRGLSPPEVTRVTL 1210
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 65/177 (36%), Gaps = 52/177 (29%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLK-----------------------------------P 121
N +GR+ EA M+M+++N GL P
Sbjct: 757 NFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVP 816
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------------- 168
D +Y ++ G + G+ EA L I+RG + T +L L
Sbjct: 817 DSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYF 876
Query: 169 ----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++G P I F ++I LC G I +A +L M +G P+ +H LI L
Sbjct: 877 RKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGL 933
>gi|302765375|ref|XP_002966108.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
gi|300165528|gb|EFJ32135.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
Length = 382
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 106/255 (41%), Gaps = 51/255 (20%)
Query: 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFV-DKI----------KASPLKERIDIFNSI 63
+L+D + A S+D+ R++Q V D + K L + + I + +
Sbjct: 18 ILIDGLCK---AKRSIDVLRCFRTMQGAGIVADTVIYTVLLSGLWKEKRLDQALAILHEM 74
Query: 64 KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------------NHLM-----VGRVE 105
+ G +V +N L+ L NE D A + F N L+ G++E
Sbjct: 75 RDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPLVTYNTLLDGLFWTGKLE 134
Query: 106 EA--YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
A E+L ++K G PDV T T ++DG CK + A E+L E ++ G N+VT
Sbjct: 135 SAMAVELLESMKARGCSPDVITSTILVDGLCKESKVAAAWEVLCEMLDAGCVPNLVTSKS 194
Query: 164 LLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LL L +M G P +T+ +I LC VG++ A L +M G
Sbjct: 195 LLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAGNLYEVMTGDG 254
Query: 207 KIPSRTSHDMLIKKL 221
++ LI L
Sbjct: 255 CDADVVTYSTLIDGL 269
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A ++ ++ G P+V TY ++DG CKVGR +A L G +VV
Sbjct: 204 RVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAGNLYEVMTGDGCDADVV--- 260
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
T++ +I LC G++ +A LLL M G PS T
Sbjct: 261 ---------------TYSTLIDGLCKGGRVDEAHLLLARMVRMGT-PSST 294
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRV++A + + DG DV TY+ ++DG CK GR +EA LL + G + +T
Sbjct: 237 VGRVKDAGNLYEVMTGDGCDADVVTYSTLIDGLCKGGRVDEAHLLLARMVRMGTPSSTLT 296
>gi|255661032|gb|ACU25685.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 373
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 33/188 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + L E + + N + K+G + +N L+ V +++ D A++ F
Sbjct: 141 KEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVSKFDDAIRVFRE----------- 189
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
M N P V TY +++G CK R EA +L+ E +E+G V+T L++ L
Sbjct: 190 ---MGSTN--CSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGL 244
Query: 169 EMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
GH P N +I LC VGK AL+L F M P+
Sbjct: 245 CQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNL 304
Query: 212 TSHDMLIK 219
+H+ L++
Sbjct: 305 VTHNTLME 312
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 37/211 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA- 107
+A +K+ I+++ + ++ + +V FN ++ L + D A+ + G VE++
Sbjct: 37 RAGRIKDCIELWELMGREDSQ-NVVSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDST 95
Query: 108 -YEMLMN--VKND---------------GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
Y +L++ KN G D + Y+A+++G CK + +EA+ +LN
Sbjct: 96 TYGILVDGFCKNGYINKSLRVLGIAEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGM 155
Query: 150 IERGVTQNVVTLIQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGKI 192
I+ G T N L+ EMG P +T+N +I LC +
Sbjct: 156 IKNGGTPNAHVYNTLINGFVGVSKFDDAIRVFREMGSTNCSPTVVTYNTLINGLCKGERF 215
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+A L+ M E G P ++ +L+K L Q
Sbjct: 216 AEAYDLVKEMLEKGWKPCVITYSLLMKGLCQ 246
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + + + PD Y A+++GF + GR + +EL E + R +QNVV+
Sbjct: 4 GDIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELW-ELMGREDSQNVVSF 62
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++ L + G + + T+ ++ C G I+K+L +L + E
Sbjct: 63 NIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGIAEE 122
Query: 205 HGKIPSRTSHDMLIKKLDQQP 225
G + ++ +I L ++
Sbjct: 123 KGGVLDAFAYSAMINGLCKEA 143
>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Glycine max]
Length = 479
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 34/195 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ-DTAVKFFSNHLMVGRVEE 106
++ + +K I + +++ G SV N L+ AL E D+A++ F
Sbjct: 131 VEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALRIFQE--------- 181
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----- 161
+ N G +PD YTY +++G C++G +EA EL E ++G + +VVT
Sbjct: 182 -------MPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIH 234
Query: 162 -----------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
I LL+ ++ I P T+++++ LC G +A+ LL +M + +P
Sbjct: 235 GLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLP 294
Query: 210 SRTSHDMLIKKLDQQ 224
+ ++ LI L ++
Sbjct: 295 NMVTYSTLINGLCKE 309
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ E ++F +++ G + SV + L+ L N D A+ G +EE
Sbjct: 207 ISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAI---------GLLEE------ 251
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------- 161
+K + ++P+V+TY+++MDG CK G S++AM+LL ++ N+VT
Sbjct: 252 -MKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKER 310
Query: 162 -----IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS-- 213
+++L R+ + G P + +I LC G +A + M G P+R S
Sbjct: 311 KLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWS 370
Query: 214 -----HDMLIKKL 221
H+M+++ L
Sbjct: 371 LHVRMHNMVVQGL 383
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
++ EA E+L ++ GLKP+ Y I+ G C G EA ++E + G++ N +
Sbjct: 311 KLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWS 370
Query: 161 --------LIQLLQ---------RLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLL 198
++Q L +L + R I TF+ +++ C G +HKA +
Sbjct: 371 LHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARI 430
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L M G IP +++I L
Sbjct: 431 LEEMVLDGCIPDEGVWNVVIGGL 453
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 39/210 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
KA L + ++ + ++ G V+ N ++ L A+ +F
Sbjct: 41 CKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDI 100
Query: 98 ---HLMV------GRVEEAYEML--MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+++V GRVEEA+++ M+ + L P+V TYT +++G CK G+ + A+ELL
Sbjct: 101 ITFNILVDALVKSGRVEEAFQIFESMHTSSQCL-PNVVTYTTVINGLCKDGKLDRAIELL 159
Query: 147 NEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGV 189
+ E G NV+T L++ L EM G P I +N ++ LC
Sbjct: 160 DLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKS 219
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
++ +AL L+ LM G P+ +++ L++
Sbjct: 220 RRLDEALELVQLMIRSGCYPTVVTYNSLME 249
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++AYE+L +++ G+ P V + ++ G CK GR +A+ T +++T
Sbjct: 44 GKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITF 103
Query: 162 IQLL-------------QRLEMGH-----IPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ Q E H +P +T+ VI LC GK+ +A+ LL LM
Sbjct: 104 NILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMN 163
Query: 204 EHGKIPSRTSHDMLIKKL 221
E G P+ ++ +L++ L
Sbjct: 164 ETGCCPNVITYSVLVEGL 181
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 90/213 (42%), Gaps = 41/213 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
KA + + F ++ + FN L+ ALV + A + F
Sbjct: 76 CKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPN 135
Query: 97 --------NHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
N L G+++ A E+L + G P+V TY+ +++G CK GR+++ LL
Sbjct: 136 VVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQ 195
Query: 148 EAIERGVTQNVVT-------------------LIQLLQRLEMGHIPRTITFNNVIQALCG 188
E RG +V+ L+QL+ R G P +T+N++++ C
Sbjct: 196 EMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIR--SGCYPTVVTYNSLMELFCR 253
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ +A L+ +M E G P +++ +I L
Sbjct: 254 SKQVDRAFRLIQVMSERGCPPDVINYNTVIAGL 286
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 63/170 (37%), Gaps = 51/170 (30%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI------------ 150
++E A E+L +K G P+ TY +++G C+ +S +A+ LL I
Sbjct: 332 KLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFS 391
Query: 151 -----------------------ERGVTQNVVTLIQLLQRLEMG---------------- 171
ER N V L+ L G
Sbjct: 392 MVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES 451
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+N+V+ LCGVG+I +A+ ++ M P S+ LI+ L
Sbjct: 452 FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGL 501
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 39/197 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+ L E +++ + + G +V +N L M L ++Q V+ A
Sbjct: 217 CKSRRLDEALELVQLMIRSGCYPTVVTYNSL-MELFCRSKQ---------------VDRA 260
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ ++ + G PDV Y ++ G C+ R ++A LL + + +V+T ++
Sbjct: 261 FRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDG 320
Query: 168 L-----------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L + G P T+ VI+ LC K +AL LL M +
Sbjct: 321 LCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID 380
Query: 205 HGKIPSRTSHDMLIKKL 221
+P +S M+I L
Sbjct: 381 SEVVPDLSSFSMVIGSL 397
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------AIERGV 154
VGR+EEA M+ + + PD +Y A++ G C+V EA EL A+E GV
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGV 528
Query: 155 TQNVVTLIQLLQRLEMGH 172
+V + +RL H
Sbjct: 529 YNVLVNELCKKKRLSDAH 546
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
V VEEAYE+ V+ G +V Y +++ CK R ++A + N+ IE G Q
Sbjct: 504 VSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYKQQ 560
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 74/134 (55%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G VEEA+++L + + G++P + TY AI+ G CK+G+ + A ++L E ++ G+T N T
Sbjct: 306 GLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATY 365
Query: 161 ---LIQLLQR---LEM----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+++ +R LE G +P ++F+++I L G +++AL+ M
Sbjct: 366 NTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER 425
Query: 205 HGKIPSRTSHDMLI 218
G +P + +LI
Sbjct: 426 SGIVPDNVIYTILI 439
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A + + LKPD TY ++DGFCK G A EL ++ I + + + ++
Sbjct: 516 GNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISY 575
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L Q LE G P +T N +I+ C G + KA L M
Sbjct: 576 GTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMIS 635
Query: 205 HGKIPSRTSHDMLI 218
+G IP S++ LI
Sbjct: 636 NGIIPDSFSYNTLI 649
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVK---NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
V F S ++ R Y+ LM+ + G+ PD YT ++DGFC+ G ++A+++ +E
Sbjct: 398 VSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDE 457
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
+ RG +VVT L L E G +P TF +I+ C G
Sbjct: 458 MLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGN 517
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ KAL L M P + +++ LI
Sbjct: 518 MDKALNLFEAMVRTNLKPDKVTYNTLI 544
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 85/196 (43%), Gaps = 37/196 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
++A L+E + F +++ G + S++ N LL LV D A + + + G
Sbjct: 198 VQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNV 257
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ E L +++ G+ D+ TY +++ +C+ G EA +LLN
Sbjct: 258 YTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNS 317
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
RG+ P +T+N ++ LC +GK +A +L M + G
Sbjct: 318 FSSRGME------------------PGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLT 359
Query: 209 PSRTSHDMLIKKLDQQ 224
P+ +++ L+ ++ ++
Sbjct: 360 PNAATYNTLLVEICRR 375
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +AYE L + ++G+ PD ++Y ++DG+ K +A L+NE +RG+ N+
Sbjct: 621 GDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNI--- 677
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IT+N ++ C GK+ +A +L M E G P ++ LI
Sbjct: 678 ---------------ITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLI 719
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+L +E+A+ ++ ++ GL+ ++ TY I++GFC G+ EA ++L + IE G+
Sbjct: 651 GYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINP 710
Query: 157 NVVTLIQLLQRLEMGHIPR 175
+ T L+ GH+ +
Sbjct: 711 DGATYSSLIN----GHVSQ 725
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 74/134 (55%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G VEEA+++L + + G++P + TY AI+ G CK+G+ + A ++L E ++ G+T N T
Sbjct: 306 GLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATY 365
Query: 161 ---LIQLLQR---LEM----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+++ +R LE G +P ++F+++I L G +++AL+ M
Sbjct: 366 NTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER 425
Query: 205 HGKIPSRTSHDMLI 218
G +P + +LI
Sbjct: 426 SGIVPDNVIYTILI 439
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A + + LKPD TY ++DGFCK G A EL ++ I + + + ++
Sbjct: 516 GNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISY 575
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L Q LE G P +T N +I+ C G + KA L M
Sbjct: 576 GTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMIS 635
Query: 205 HGKIPSRTSHDMLI 218
+G IP S++ LI
Sbjct: 636 NGIIPDSFSYNTLI 649
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVK---NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
V F S ++ R Y+ LM+ + G+ PD YT ++DGFC+ G ++A+++ +E
Sbjct: 398 VSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDE 457
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
+ RG +VVT L L E G +P TF +I+ C G
Sbjct: 458 MLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGN 517
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ KAL L M P + +++ LI
Sbjct: 518 MDKALNLFEAMVRTNLKPDKVTYNTLI 544
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 85/196 (43%), Gaps = 37/196 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
++A L+E + F +++ G + S++ N LL LV D A + + + G
Sbjct: 198 VQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNV 257
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ E L +++ G+ D+ TY +++ +C+ G EA +LLN
Sbjct: 258 YTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNS 317
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
RG+ P +T+N ++ LC +GK +A +L M + G
Sbjct: 318 FSSRGME------------------PGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLT 359
Query: 209 PSRTSHDMLIKKLDQQ 224
P+ +++ L+ ++ ++
Sbjct: 360 PNAATYNTLLVEICRR 375
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +AYE L + ++G+ PD ++Y ++DG+ K +A L+NE +RG+ N+
Sbjct: 621 GDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNI--- 677
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IT+N ++ C GK+ +A +L M E G P ++ LI
Sbjct: 678 ---------------ITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLI 719
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+L +E+A+ ++ ++ GL+ ++ TY I++GFC G+ EA ++L + IE G+
Sbjct: 651 GYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINP 710
Query: 157 NVVTLIQLLQRLEMGHIPR 175
+ T L+ GH+ +
Sbjct: 711 DGATYSSLIN----GHVSQ 725
>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
Length = 1024
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 99/265 (37%), Gaps = 77/265 (29%)
Query: 37 RSLQAQR-FVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
R+L A R FV I K S E I +F ++K+ G + SV FN LL ++ A +
Sbjct: 234 RNLNAARNFVFSIEKKSGGAESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQL 293
Query: 95 FSNHL--------------------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F L M V+E + + PDV TY ++DG C
Sbjct: 294 FDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLC 353
Query: 135 KVGRSN-------------------------------------EAMELLNEAIERGVTQN 157
+ G+ EA+ LL E + RG+ N
Sbjct: 354 RAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPN 413
Query: 158 VVTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+T L+Q L + G IP T T N +I+A C +GK+ +A +
Sbjct: 414 KITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVF 473
Query: 200 FLMYEHGKIPSRTSHDMLIKKLDQQ 224
M E P ++ +L++ L Q+
Sbjct: 474 EKMSELRVQPDSATYSVLVRSLCQR 498
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H +G++EEA+ + + ++PD TY+ ++ C+ G A E +E E+ +
Sbjct: 460 HCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEI--- 516
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
LL ++G P +N + + LC GK KA
Sbjct: 517 ------LLH--DVGCKPLVAAYNPMFEYLCSNGKTKKA 546
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFN-SIKKDGTNWSVSDFNDLLMALVMLNEQ-- 88
L +N + +A+ D + +K + I+ + G ++S+ +DLL +V
Sbjct: 445 LCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPN 504
Query: 89 ----DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
+T + ++ M+ +E + + +K GL P+V TY ++D CK+GR ++A+
Sbjct: 505 HRIFNTVICAYAKRAMI---DEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVL 561
Query: 145 LLNEAIERGVTQNVVTLIQL-----------------LQRLEMGHIPRTITFNNVIQALC 187
N+ I GVT N V L L+ L G P + FN V+ LC
Sbjct: 562 QFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLC 621
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G++ +A L+ M G P S++ LI
Sbjct: 622 KEGRVMEARRLIDSMVCMGLKPDVISYNTLI 652
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 20/137 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V++AY + + + G+ PDV TY I+DG CK + A ++ + +E+GV N VT
Sbjct: 207 GQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTY 263
Query: 162 IQLL------QRLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ Q ++M G P +T+N +I LC + +A + M +
Sbjct: 264 NTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMID 323
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ +I L
Sbjct: 324 RGVKPDHVTYNTIIDGL 340
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 37/181 (20%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNHLM 100
FN + +G + FN L+ L +++ + + F N
Sbjct: 563 FNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCK 622
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV EA ++ ++ GLKPDV +Y ++DG C R +EA++LL+ + G+ N+V
Sbjct: 623 EGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIV- 681
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
++N ++ C G+I A L M G P +++ ++
Sbjct: 682 -----------------SYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNG 724
Query: 221 L 221
L
Sbjct: 725 L 725
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 23/139 (16%)
Query: 103 RVEEAYE---MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
R EEA E M+++ ++ PDV +Y +++GF G+ ++A L +E GV+ +VV
Sbjct: 170 RAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLF---LEMGVSPDVV 226
Query: 160 TLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ Q +E G P +T+N +I LC ++ A + M
Sbjct: 227 TYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKM 286
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ G PS +++ +I L
Sbjct: 287 VDKGVKPSNVTYNTIIDGL 305
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+L G+ EE + + + L+PDV+TY ++D CK G+ NEA L + I +G+
Sbjct: 409 GYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKP 468
Query: 157 NVVTLIQLLQRL-------EM----------GHIPRTITFNNVIQALCGVGKIHKALLLL 199
+V +L EM G P FN VI A I + + +
Sbjct: 469 SVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIF 528
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M + G P+ ++ LI L
Sbjct: 529 IKMKQQGLSPNVVTYGTLIDAL 550
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 74/193 (38%), Gaps = 35/193 (18%)
Query: 30 LDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
L++ +P + +D + KA + D+F + + G + +N ++ L E
Sbjct: 217 LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEV 276
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
D A F + + G+KP TY I+DG CK + A + +
Sbjct: 277 DMAEGVFQKMV----------------DKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQ 320
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
I+RGV P +T+N +I LC I KA + M + G
Sbjct: 321 MIDRGVK------------------PDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVK 362
Query: 209 PSRTSHDMLIKKL 221
P ++ ++I L
Sbjct: 363 PDNLTYTIIIDGL 375
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
+++A + + + G+KPD TYT I+DG CK + A + + I++GV N T
Sbjct: 346 IDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNC 405
Query: 161 LI----------QLLQRL-EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LI +++QR+ EM P T+ ++ LC GK ++A L M G
Sbjct: 406 LIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKG 465
Query: 207 KIPSRTSHDMLI 218
PS T + +++
Sbjct: 466 IKPSVTIYGIML 477
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 36/174 (20%)
Query: 68 TNWSVSDF--NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM-NVKNDGLKPDVY 124
T W V D N LL L DT RV EA +L+ + G + V
Sbjct: 113 TGWRVDDIVVNQLLKGLC-----DTK-----------RVGEAMHVLLRQMPEVGCRLGVV 156
Query: 125 TYTAIMDGFCKVGRSNEAMELLN---EAIERGVTQNVVTLIQLLQR-------------- 167
+Y ++ G C R+ EA ELL+ + + + +VV+ ++
Sbjct: 157 SYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLF 216
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LEMG P +T+N +I LC ++ +A + M E G P+ +++ +I L
Sbjct: 217 LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGL 270
Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+EA+++ ++ + L+ D+ T+ ++DG K GR +AM+L G+ +VVT +
Sbjct: 767 DEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLI 826
Query: 165 LQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+ L E G + +V++ H L+ + + G+IP ++ + KLD+
Sbjct: 827 AENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAY---LSKLDE 883
Query: 224 Q 224
+
Sbjct: 884 K 884
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L E I N + G + FN L++AL N R+EEA
Sbjct: 347 KNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQN----------------RLEEAL 390
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-----VTQNV----- 158
++ + GL PDVYT+ +++ CKVG + + L E G VT N+
Sbjct: 391 DLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHL 450
Query: 159 ------VTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
V + LL+ +E PR T+T+N +I ALC +I +A + M HG S
Sbjct: 451 CSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSA 510
Query: 212 TSHDMLIKKL 221
+ + LI L
Sbjct: 511 VTFNTLIDGL 520
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V A +++ + +G PDV+TY +++ K G +EA ++N+ ++RG + T
Sbjct: 314 GHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTF 373
Query: 162 IQLL------QRLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RLE G P TFN +I ALC VG H + L M
Sbjct: 374 NTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKS 433
Query: 205 HGKIPSRTSHDMLIKKL 221
G P ++++LI L
Sbjct: 434 SGCAPDEVTYNILIDHL 450
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 36 PRS-LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
PRS + +D + K ++E ++F+ + G + S FN L+ L D A +
Sbjct: 472 PRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATE 531
Query: 94 F-------------------FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
+++ G +++A ++L + +G + DV TY +++G C
Sbjct: 532 LIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLC 591
Query: 135 KVGRSNEAMELLNEAIERGV----------------TQNVVTLIQLLQRL-EMGHIPRTI 177
K GR+ A++LL +G+ N+ + L + + E+G P +
Sbjct: 592 KAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDAL 651
Query: 178 TFNNVIQALC-GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ V + LC G G I +A L M G +P +S ML + L
Sbjct: 652 TYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGL 696
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 36/212 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF---SNH------- 98
+ S +K ++N + G V N L+ AL ++ TAV S+H
Sbjct: 172 EGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDET 231
Query: 99 ----LMVGRVEE-AYEMLMNVKND----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
LM G +EE + E + VK G P T +++G+CK+GR +A+ + +
Sbjct: 232 TFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKE 291
Query: 150 IERGVTQNVV---TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKI 192
I G + V T + L + L+ GH P T+N VI L G++
Sbjct: 292 IADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGEL 351
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+A ++ M + G +P T+ + LI L Q
Sbjct: 352 DEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQ 383
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 17/145 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + +GRVE+A + DG +PD TY + C+ G + A+++++ ++ G
Sbjct: 271 LINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEG 330
Query: 154 VTQNVV---TLIQLL--------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+V T+I L Q ++ G +P T TFN +I ALC ++ +AL
Sbjct: 331 HDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEAL 390
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L + G P + ++LI L
Sbjct: 391 DLARELTVKGLSPDVYTFNILINAL 415
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
F ++ + R ++A +++ N N G++ D Y +++ + R + NE +R
Sbjct: 130 FVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDR 189
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRT-----------------ITFNNVIQALCGVGKIHKA 195
G+ +VVTL L++ L H RT TF ++Q G I A
Sbjct: 190 GIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAA 249
Query: 196 LLLLFLMYEHGKIPSRTSHDMLI 218
L + M E G P+R + ++LI
Sbjct: 250 LRVKTKMMETGCSPTRVTVNVLI 272
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A M ++ + G KPD++T+ +++ G CKV + EA+ L + + GV N +T
Sbjct: 99 KVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYN 158
Query: 163 QL----LQRLEM-------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L L+R M G IT+N +I+ALC G I K L L M
Sbjct: 159 TLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK 218
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ S ++LI L
Sbjct: 219 GLNPNNISCNILINGL 234
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 22/147 (14%)
Query: 94 FFSNHLMVGRVEEAY-----EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F N L++G ++ Y E++ ++ G +P+V TYT ++D FCK GR EA +L+E
Sbjct: 15 FTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDE 74
Query: 149 AIERGVTQNVV---TLIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGK 191
+G+ N V LI L + E G P TFN++I LC V K
Sbjct: 75 MSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 134
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+AL L M G I + +++ LI
Sbjct: 135 FEEALGLYQDMLLEGVIANTITYNTLI 161
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 40/216 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-------- 100
K + +E + ++ + +G + +N L+ A + A+K ++ L
Sbjct: 131 KVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDI 190
Query: 101 -----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G +E+ + ++ + GL P+ + +++G C+ G A+E L +
Sbjct: 191 TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM 250
Query: 150 IERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
I RG+T ++VT + L +L++ G P IT+N +I C G
Sbjct: 251 IHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMF 310
Query: 193 HKALLLLFLMYEHGKIPSRTSHDML----IKKLDQQ 224
A LLL + G IP+ + +L IK+ DQ+
Sbjct: 311 DDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 346
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------- 168
G PD++TY ++ G CK G A EL+NE +G NV+T L+ R
Sbjct: 9 GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEA 68
Query: 169 -----EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
EM G + +N +I ALC K+ AL + M G P + + LI
Sbjct: 69 RNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFG 128
Query: 221 L 221
L
Sbjct: 129 L 129
>gi|296088471|emb|CBI37462.3| unnamed protein product [Vitis vinifera]
Length = 673
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 33/202 (16%)
Query: 19 SPSRSPSAAESL-DLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFN 76
+PSR E + ++ P S +D KA + E ++F ++ G+ S
Sbjct: 388 NPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAK 447
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
+ ++ L + D R EE ++++ ++ N G+ PDV TY +++G C
Sbjct: 448 TYAIMILALVQSD-------------RTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLA 494
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
G+ EA + L E +G + P +T+N + LC K +AL
Sbjct: 495 GKVEEAYKFLEEMGNKG------------------YRPDIVTYNCFLDVLCENKKSEEAL 536
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
L M E G +PS + +MLI
Sbjct: 537 GLYGRMIEAGCVPSVHTFNMLI 558
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 20/124 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN-------VVTLIQLLQR--- 167
G PD +TY +D FCK G EA EL +G T + + ++ L+Q
Sbjct: 403 GHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRT 462
Query: 168 ----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+ G +P T+ VI+ +C GK+ +A L M G P +++
Sbjct: 463 EECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCF 522
Query: 218 IKKL 221
+ L
Sbjct: 523 LDVL 526
>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 625
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 19/134 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G EA + ++ +G+KPD+ TY +++ GFCK GR EAM L E R T N VT
Sbjct: 249 GMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEI--RDATPNHVTY 306
Query: 162 IQLLQ--------------RLEM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ R EM G P +T+N++++ LC +G+I A LL M E
Sbjct: 307 TTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSE 366
Query: 205 HGKIPSRTSHDMLI 218
P + + LI
Sbjct: 367 KKIEPDNVTCNTLI 380
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 35/187 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K ++E + +F I+ D T V+ + L+ LN+ D A+ R+ E
Sbjct: 282 KEGRMREAMRLFKEIR-DATPNHVT-YTTLIDGYCRLNDLDQAL----------RLREEM 329
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
E GL P V TY +I+ C++GR +A +LLNE E+ + + VT L+
Sbjct: 330 EA------QGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAY 383
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ +E G T+ +I C + ++ A LL M + G PS
Sbjct: 384 CKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSY 443
Query: 212 TSHDMLI 218
++ L+
Sbjct: 444 CTYSWLV 450
Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ ++ A E+L+++ + G P TY+ ++DG+C ++L +E + +G+ +
Sbjct: 421 IREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSL 480
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L++R E G + ++ + ++ A +GK + A LL MY
Sbjct: 481 YRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEMY 540
Query: 204 E 204
+
Sbjct: 541 K 541
>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Glycine max]
Length = 466
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 33/209 (15%)
Query: 12 FSVLLVDSPSRSPSAAESL-DLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTN 69
F V +P+R E + +L P + +D KA + E +D+F ++ G++
Sbjct: 174 FGWCRVRNPTRGMKLLEEMVELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSS 233
Query: 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAI 129
S + +V L + D R+EE ++++ ++ + G PDV TY I
Sbjct: 234 ISSPTAKTYAIIIVALAQHD-------------RMEECFKLIGHMISSGCLPDVTTYKEI 280
Query: 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189
++G C G+ +EA + L E + + P +T+N ++ LC
Sbjct: 281 IEGMCVCGKIDEAYKFLEEMGNK------------------SYRPDIVTYNCFLKVLCDN 322
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
K AL L M E IPS +++MLI
Sbjct: 323 KKSEDALKLYGRMIELNCIPSVQTYNMLI 351
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 20/124 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-------QNVVTLIQLLQ--RL 168
G +PD + Y +D +CK G EA++L +G + + ++ L Q R+
Sbjct: 196 GHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKTYAIIIVALAQHDRM 255
Query: 169 E-----MGH------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
E +GH +P T+ +I+ +C GKI +A L M P +++
Sbjct: 256 EECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEAYKFLEEMGNKSYRPDIVTYNCF 315
Query: 218 IKKL 221
+K L
Sbjct: 316 LKVL 319
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 22/124 (17%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
VE+A E L +KP+ TY + G+C+V M+LL E +
Sbjct: 148 VEDA-ETLYKKMRKTVKPNAETYNIFVFGWCRVRNPTRGMKLLEEMV------------- 193
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG---KIPSRTSHDMLIKK 220
E+GH P +N I C G + +A+ L M G P+ ++ ++I
Sbjct: 194 -----ELGHRPDNFAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPTAKTYAIIIVA 248
Query: 221 LDQQ 224
L Q
Sbjct: 249 LAQH 252
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
A+E + N G +PD+ TY+ ++DG + +A LL E I +G+
Sbjct: 363 AFETWQEMDNRGCRPDIDTYSVMIDGLFNCNKVEDACFLLEEVINKGI 410
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++AYE+L +++ G+ P V + ++ G CK GR +A+ T +++T
Sbjct: 44 GKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITF 103
Query: 162 IQLL-------------QRLEMGH-----IPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ Q E H +P +T+ VI LC GK+ +A+ LL LM
Sbjct: 104 NILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMN 163
Query: 204 EHGKIPSRTSHDMLIKKL 221
E G P+ ++ +L++ L
Sbjct: 164 ETGCCPNVITYSVLVEGL 181
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 90/213 (42%), Gaps = 41/213 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
KA + + F ++ + FN L+ ALV + A + F
Sbjct: 76 CKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPN 135
Query: 97 --------NHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
N L G+++ A E+L + G P+V TY+ +++G CK GR+++ LL
Sbjct: 136 VVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQ 195
Query: 148 EAIERGVTQNVVT-------------------LIQLLQRLEMGHIPRTITFNNVIQALCG 188
E RG +V+ L+QL+ R G P +T+N++++ C
Sbjct: 196 EMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIR--SGCYPTVVTYNSLMELFCR 253
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ +A L+ +M E G P +++ +I L
Sbjct: 254 SKQVDRAFRLIQVMSERGCPPDVINYNTVIAGL 286
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 63/170 (37%), Gaps = 51/170 (30%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI------------ 150
++E A E+L +K G P+ TY +++G C+ +S +A+ LL I
Sbjct: 332 KLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFS 391
Query: 151 -----------------------ERGVTQNVVTLIQLLQRLEMG---------------- 171
ER N V L+ L G
Sbjct: 392 MVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES 451
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+N+V+ LCGVG+I +A+ ++ M P S+ LI+ L
Sbjct: 452 FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGL 501
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 39/197 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+ L E +++ + + G +V +N L M L ++Q V+ A
Sbjct: 217 CKSRRLDEALELVQLMIRSGCYPTVVTYNSL-MELFCRSKQ---------------VDRA 260
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ ++ + G PDV Y ++ G C+ R ++A LL + + +V+T ++
Sbjct: 261 FRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDG 320
Query: 168 L-----------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L + G P T+ VI+ LC K +AL LL M +
Sbjct: 321 LCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID 380
Query: 205 HGKIPSRTSHDMLIKKL 221
+P +S M+I L
Sbjct: 381 SEVVPDLSSFSMVIGSL 397
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------AIERGV 154
VGR+EEA M+ + + PD +Y A++ G C+V EA EL A+E GV
Sbjct: 469 VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGV 528
Query: 155 TQNVVTLIQLLQRLEMGH 172
+V + +RL H
Sbjct: 529 YNVLVNELCKKKRLSDAH 546
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
V VEEAYE+ V+ G +V Y +++ CK R ++A + N+ IE G Q
Sbjct: 504 VSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYKQQ 560
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
+V++A M ++ + G KPD++T+ +++ G CKV + EA+ L + + GV N +
Sbjct: 474 KVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYN 533
Query: 160 TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
TLI R L G IT+N +I+ALC G I K L L M
Sbjct: 534 TLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK 593
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ S ++LI L
Sbjct: 594 GLNPNNISCNILINGL 609
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 22/147 (14%)
Query: 94 FFSNHLMVGRVEEAY-----EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F N L++G ++ Y E++ ++ G +P+V TYT ++D FCK GR EA +L+E
Sbjct: 390 FTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDE 449
Query: 149 AIERGVTQNVV---TLIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGK 191
+G+ N V LI L + E G P TFN++I LC V K
Sbjct: 450 MSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 509
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+AL L M G I + +++ LI
Sbjct: 510 FEEALGLYQDMLLEGVIANTITYNTLI 536
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 23/145 (15%)
Query: 85 LNEQDTAVKFFSNHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
LN + + N L G ++ A E L ++ + GL PD+ TY ++++G CK GR+ EA+
Sbjct: 595 LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEAL 654
Query: 144 ELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L ++ G+ P IT+N +I C G A LLL
Sbjct: 655 NLFDKLQVEGIC------------------PDAITYNTLISWHCKEGMFDDAHLLLSRGV 696
Query: 204 EHGKIPSRTSHDML----IKKLDQQ 224
+ G IP+ + +L IK+ DQ+
Sbjct: 697 DSGFIPNEVTWYILVSNFIKEGDQE 721
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQL 164
YEML + G+ P VYT+ +M C V + A LL + G N + TLI
Sbjct: 206 YEML----SKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHA 261
Query: 165 LQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L ++ MG IP TFN+ I LC + +IH+A L+ M G P+
Sbjct: 262 LXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPN 321
Query: 211 RTSHDMLIKKL 221
++ +L+ L
Sbjct: 322 SFTYGVLMHGL 332
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 37/161 (22%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-----------------HLM 100
++F + G + +V F ++ AL ++NE D+A + H +
Sbjct: 203 NVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHAL 262
Query: 101 --VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
VGRV E ++L + G PDV T+ + G CK+ R +EA +L++ + RG T
Sbjct: 263 XKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFT--- 319
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
P + T+ ++ LC +GK+ +A +LL
Sbjct: 320 ---------------PNSFTYGVLMHGLCRMGKVDEARMLL 345
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 102 GRVEEA----YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
GR++EA +E +++V G PD++TY ++ G CK G A EL+NE +G N
Sbjct: 367 GRLDEAKAVMHESMLSV---GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPN 423
Query: 158 VVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V+T L+ R EM G + +N +I ALC K+ AL +
Sbjct: 424 VITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFG 483
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G P + + LI L
Sbjct: 484 DMSSKGCKPDIFTFNSLIFGL 504
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA------------- 149
R+ EA +++ + G P+ +TY +M G C++G+ +EA LLN+
Sbjct: 302 RIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLIN 361
Query: 150 --IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ RG ++ L +G P T+N +I LC G + A L+ M G
Sbjct: 362 GYVSRGRLDEAKAVMH-ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGC 420
Query: 208 IPSRTSHDMLIKKLDQQ 224
P+ ++ +LI + ++
Sbjct: 421 EPNVITYTILIDRFCKE 437
>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia salsoloides]
Length = 410
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV FN L+ + ++ +G ++E + + + G
Sbjct: 150 VFDAITKWGLRPSVVSFNTLM----------------NGYIRLGDLDEGFRLKSAMHASG 193
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + + A EL +E +++G+ N VT L+
Sbjct: 194 VEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAM 253
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 254 EIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLI 310
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G +++A ++ ++ GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 282 GDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVY 341
Query: 160 -TLIQ--------------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI L + L +G P T T+ +I C G + LL M
Sbjct: 342 TTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQR 401
Query: 205 HGKIPS 210
G +PS
Sbjct: 402 DGHVPS 407
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKPD TYT I++ FCK G +LL E G +VVT
Sbjct: 352 GRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 41/221 (18%)
Query: 28 ESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLL 79
E+L+L EN P + F+D K+ + ID F ++KK G S++ N L
Sbjct: 428 EALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASL 487
Query: 80 MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
L GR+ EA ++ ++ GL PD TY +M + K G+
Sbjct: 488 YTLAE----------------TGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQI 531
Query: 140 NEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNV 182
++A +LL+E I +G +V+ + L+ L + G + P +T+N +
Sbjct: 532 DKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNIL 591
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+ L GKI KAL L M E G P+ + + L+ L +
Sbjct: 592 LTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSK 632
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++A+ + + ++G PDV TYT ++D C G+ ++A EL + + + VT I
Sbjct: 285 RIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYI 344
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + EM G+ P +T+ +I+ALC G + +A +L +M
Sbjct: 345 TLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTK 404
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ +++ +I L
Sbjct: 405 GIFPNLHTYNTMICGL 420
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 81/206 (39%), Gaps = 46/206 (22%)
Query: 9 PTPFS-VLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKAS--------PLKERIDI 59
PT FS VL +D +S A+++D E + + AS + E DI
Sbjct: 443 PTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDI 502
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLM----- 100
FN + K G + +N L+ + D A + S N L+
Sbjct: 503 FNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYK 562
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV+ A++M +KN L P V TY ++ G K G+ +A+EL E G
Sbjct: 563 AGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCP----- 617
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQAL 186
P TITFN+++ L
Sbjct: 618 -------------PNTITFNSLLDCL 630
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 98 HLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
HL++ G EA ++ + ++G+KP + TY+A+M + G + + M LL E G+
Sbjct: 209 HLLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRP 268
Query: 157 NVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLL 199
N+ T ++ L EM G P IT+ +I ALC GK+ KA L
Sbjct: 269 NIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELY 328
Query: 200 FLMYEHGKIPSRTSHDMLIKKLDQ 223
M P R ++ L+ K +
Sbjct: 329 VKMRASSHSPDRVTYITLMDKFGK 352
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 51/230 (22%)
Query: 3 ISAANSPTPFSVL-LVDS---PSRSPSA----AESLDLKENPRSLQAQRFVDKI-KASPL 53
+S SPTP + L+D RS A E LD P S+ ++ K+ +
Sbjct: 893 MSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEI 952
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113
++F + K+G + + L+ L + GR++EA +
Sbjct: 953 DFACELFKKMVKEGIRPDLKSYTILVECLCI----------------TGRIDEAVQYFEE 996
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
+K GL PD +Y I++G K R +EA+ L +E RG++
Sbjct: 997 LKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGIS------------------ 1038
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEH----GKIPSRTSHDMLIK 219
P T+N +I L GK+ A+ MYE G PS +++ LI+
Sbjct: 1039 PDLYTYNALILHLGIAGKVDVAV----KMYEELQLVGLEPSVFTYNALIR 1084
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 97/246 (39%), Gaps = 46/246 (18%)
Query: 4 SAANSPTPFSV-LLVDSPSRSPSAAESLDLKENPRSLQAQR--------FVDKIKASPLK 54
SA P F+ LL+D+ +S + DL RS + +K++ L
Sbjct: 824 SAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLN 883
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL--------------- 99
+ +D++ + + + + L+ L+ + A+K F L
Sbjct: 884 KALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILI 943
Query: 100 ----MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G ++ A E+ + +G++PD+ +YT +++ C GR +EA++ E G+
Sbjct: 944 NGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLD 1003
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
P T+++N +I L ++ +AL L M G P +++
Sbjct: 1004 ------------------PDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYN 1045
Query: 216 MLIKKL 221
LI L
Sbjct: 1046 ALILHL 1051
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA E+L N+++ G+KP ++Y +D + K G +A++ +RG+ ++
Sbjct: 425 RLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACN 484
Query: 163 QLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L L E G I P ++T+N +++ G+I KA LL M
Sbjct: 485 ASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISK 544
Query: 206 GKIP 209
G P
Sbjct: 545 GCEP 548
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 78/194 (40%), Gaps = 41/194 (21%)
Query: 48 IKASPLKERID----IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-----SNH 98
I+A RID IF + +G V + L+ AL + D A + + S+H
Sbjct: 277 IRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSH 336
Query: 99 ---------LM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
LM VG +E ++ DG PDV TYT +++ CK G + A +
Sbjct: 337 SPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFD 396
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L+ +G+ P T+N +I L ++ +AL LL M
Sbjct: 397 MLDVMTTKGI------------------FPNLHTYNTMICGLLKARRLDEALELLENMES 438
Query: 205 HGKIPSRTSHDMLI 218
G P+ S+ + I
Sbjct: 439 LGVKPTAFSYVLFI 452
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K+ L E + +F+ +K G + + +N L++ L + + D AVK + +VG
Sbjct: 1018 KSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVG------ 1071
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
L+P V+TY A++ G G ++A + + + G + N T QL
Sbjct: 1072 ----------LEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQL 1117
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---- 160
E+A E+ ++K+ G P+ +TY ++D K R N+ +L +E RG N +T
Sbjct: 813 EKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNII 872
Query: 161 ------------LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ L L G P T+ +I L G+ +A+ + M ++G
Sbjct: 873 ISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGC 932
Query: 208 IPSRTSHDMLIKKLDQQ 224
P+ +++LI +
Sbjct: 933 GPNSVIYNILINGFGKS 949
>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
Length = 567
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 18/123 (14%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+VG+ ++A L NV + PDV +Y +++GFCK+G+S+EA+ LL E RG+
Sbjct: 343 CVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLK--- 399
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +FN V + L G++ +A+LLL M + +P+ S++ +I
Sbjct: 400 ---------------PTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTII 444
Query: 219 KKL 221
L
Sbjct: 445 CGL 447
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
P+ TYT ++DG+CK G EA + +NE + RG P +T+N
Sbjct: 260 PNHVTYTTLIDGYCKKGELEEAKKCMNEMMNRGCR------------------PNELTYN 301
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+I LC G++ +A +L+ M +G + ++H ++K L
Sbjct: 302 AMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGL 342
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA + + + N G +P+ TY A++ G C GR +EA L+ + G NV T
Sbjct: 276 GELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTH 335
Query: 162 IQLLQRL--------EMGHI---------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L+ L +G++ P ++ VI C +GK +A+ LL M
Sbjct: 336 KSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRA 395
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ S + + + L
Sbjct: 396 RGLKPTVFSFNAVFRIL 412
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 30/184 (16%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+K I F+ K+ + +N LL LV +N A +FF H +V
Sbjct: 139 VKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFF--HQIV----------- 185
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ--------- 163
K + + PDV TYT ++ G+CK+G A ++ + + T+I
Sbjct: 186 --KENVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGDME 243
Query: 164 ----LLQRLEMGH--IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+ R+ G +P +T+ +I C G++ +A + M G P+ +++ +
Sbjct: 244 SARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKCMNEMMNRGCRPNELTYNAM 303
Query: 218 IKKL 221
I L
Sbjct: 304 IYGL 307
>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
Length = 545
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 47/241 (19%)
Query: 2 DISAANSPTPFS-VLLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASP 52
D+S SP S +++D +S +++ L + P + +D + K
Sbjct: 196 DMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRR 255
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-----HL-------- 99
+KE D+F + G + +V +N ++ L + A+ + + HL
Sbjct: 256 VKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYS 315
Query: 100 -------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-AIE 151
+ R E+AYE+ + + G PDV TY ++DG CK G ++AME+ + +
Sbjct: 316 ALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVG 375
Query: 152 RGVTQNVVTLIQLLQRL----EMGH-------------IPRTITFNNVIQALCGVGKIHK 194
NV+T L+ R +G +P +TF VIQ LC +I +
Sbjct: 376 NVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDE 435
Query: 195 A 195
A
Sbjct: 436 A 436
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A + + + + PDV TY A++DG K R EA +L EA +G
Sbjct: 220 KVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCH------- 272
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
P +T+N +I LC G+I AL L
Sbjct: 273 -----------PTVVTYNTMIDGLCKCGRIENALTL 297
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K S + E ++F SI K SV FN +L + + + R+++A
Sbjct: 428 CKESRIDEAHELFESIGKTCKPDSVL-FNTML----------------AGYCKITRIDDA 470
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++ + + G P + TYTA++ GFC+ GR ++A+ + +E IE G L +L+ R
Sbjct: 471 KKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPE-RHLAELVDR 529
Query: 168 LEMGHIP 174
H P
Sbjct: 530 TRTDHPP 536
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S ++ RVE+A+ + + +PD +Y +M+GF K G +A+ L E
Sbjct: 104 TCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEM 163
Query: 150 IERGV----TQNVV-----------TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
+ G+ + N+V ++ + + P I++ +I LC K+ K
Sbjct: 164 KDSGIAVLRSHNIVLRGLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDK 223
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ L M + P ++ LI L +Q
Sbjct: 224 AITLFKQMVDKAIYPDVVTYGALIDGLGKQ 253
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 77/205 (37%), Gaps = 38/205 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF--------------------SN 97
+++ + G + V +N LL L +D A++ F
Sbjct: 332 ELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDR 391
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
V R+ +A ++ ++ L PD T+T ++ CK R +EA EL E+I + +
Sbjct: 392 FCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELF-ESIGKTCKPD 450
Query: 158 VVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V +L + L+ G P T+ ++ C G+ AL++
Sbjct: 451 SVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYH 510
Query: 201 LMYEHGKIPSRTSHDMLIKKLDQQP 225
M E G P R +++ + P
Sbjct: 511 EMIEMGFPPERHLAELVDRTRTDHP 535
>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 20/147 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
VK H G+ EA + L+++ +G +PD+ Y+A +DG K+ ++A++L +
Sbjct: 436 VKELCKH---GKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICA 492
Query: 152 RGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHK 194
+G +V+ L++ L E G +P +T+N +I LC + +
Sbjct: 493 QGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEE 552
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A+L L +M E + P+ ++ LI L
Sbjct: 553 AMLFLSMMIEKEREPNVITYSTLINGL 579
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ V++A ++ ++ G PDV Y ++ G CK R EA LL+E E+G+ + VT
Sbjct: 477 IQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVT 536
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E P IT++ +I LC G+ AL+L M
Sbjct: 537 YNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMG 596
Query: 204 EHGKIPSRTSHDMLIKKL 221
G PS ++ I L
Sbjct: 597 RKGCTPSSIAYMAFIHGL 614
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF------------- 94
IK L + +F + + G + +N+L+ L N +
Sbjct: 335 IKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPTS 394
Query: 95 FSNHLMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F+N+ + G + A +L ++ G P + T+++ CK G+ EA + L +
Sbjct: 395 FTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVD 454
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
E G ++V L L G+ P I +N +I+ LC +
Sbjct: 455 MAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQR 514
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +A LL M E G +PS +++ LI L
Sbjct: 515 IAEAQNLLHEMEEKGLVPSAVTYNTLIDGL 544
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 67/174 (38%), Gaps = 26/174 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-VGRVEEA 107
KA L + I I N I DG + L M+ T N L+ G ++ A
Sbjct: 291 KAYHLLQAITIGNCIG-DG------EIGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLA 343
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ ++ G KPD+ Y ++DG C R E+ LL E E G+
Sbjct: 344 VGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIE------------ 391
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P + T N + LC I AL LL M HG +P L+K+L
Sbjct: 392 ------PTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKEL 439
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM 170
L + + G D YT T ++ +C + ++A+++ NE +RG V I +L +
Sbjct: 89 LKEMHDHGWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDRGWVDEYVFSILVLAFSKW 148
Query: 171 GHIPRTI----------------TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
G + + TF ++I ++ KAL L M + G P + +
Sbjct: 149 GKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLY 208
Query: 215 DMLIKKL 221
D++I L
Sbjct: 209 DVIIGGL 215
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV++A + +K G PD+ Y I+ G C +A+ L +E + +V +
Sbjct: 185 RVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVT 244
Query: 163 QLLQRL---------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+L+ +M T+ +N+V+ +L G +HKA LL
Sbjct: 245 KLISSFSKEEELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSVHKAYHLL 296
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A++ ++ G++P+V TYTA+++G C R ++A LL++ I++ +T NV+T
Sbjct: 205 RVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 264
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL + + M P +T++++I LC +I +A + LM
Sbjct: 265 ALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSK 324
Query: 206 GKIPSRTSHDMLI 218
G + S++ LI
Sbjct: 325 GCLADVVSYNTLI 337
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M + + G DV +Y +++GFCK R + M+L E +RG+ N VT
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369
Query: 163 QLLQR-LEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLL 199
L+Q + G + P T+N ++ LC G++ KAL++
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIF 423
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 44/219 (20%)
Query: 22 RSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA 81
R+ S+ DL+E L R D IK L + ID+F+ + K S+ DFN LL A
Sbjct: 42 RASSSVSGGDLRER---LSKTRLRD-IK---LNDAIDLFSDMVKSRPFPSIVDFNRLLSA 94
Query: 82 LVMLNEQDTAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPD 122
+V L + D + ++G +V A +L + G +PD
Sbjct: 95 IVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPD 154
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182
T ++++GFC+ R ++A+ L+++ + E+G+ P + +N +
Sbjct: 155 RVTIGSLVNGFCRRNRVSDAVSLVDKMV------------------EIGYKPDIVAYNAI 196
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +LC +++ A + G P+ ++ L+ L
Sbjct: 197 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGL 235
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A ++ + G KPD+ Y AI+D CK R N+A + E +G+ NVVT
Sbjct: 170 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT 229
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L + P IT++ ++ A GK+ +A L M
Sbjct: 230 ALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289
Query: 206 GKIPSRTSHDMLIKKL 221
P ++ LI L
Sbjct: 290 SIDPDIVTYSSLINGL 305
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VEEA+ + ++ GLKPD+ TYT +M G C G +E L + + G+ +N TL
Sbjct: 449 GKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 508
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 37/177 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
KA +++ + +F + + G + +N L+ + D A +FFS
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 401
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ G +E+A + +++ + D+ TYT ++ G CK G+ EA L
Sbjct: 402 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 461
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+G+ P +T+ ++ LC G +H+ L M + G
Sbjct: 462 SLKGLK------------------PDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 34/174 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+A +K+ + F + K G +V +N LL L G++E+A
Sbjct: 161 CQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCS----------------SGQLEQA 204
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ +K+ PDV TY ++D CK R E +L EA+
Sbjct: 205 NTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLF-EAMRAA-------------- 249
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G++P ITF+ +I LC G++ KAL + M E G P++ ++ LI L
Sbjct: 250 ---GYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGL 300
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K + +E + + G N V FN ++ N +E+A
Sbjct: 21 VKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN----------------MEKA 64
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT---QNVVTLIQL 164
E+ ++ G KPD +Y ++ G K+G+ +E++++L+E + RG T Q +L++
Sbjct: 65 REVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRA 124
Query: 165 LQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L + + GH P + F +I LC GK+ A M +HG P+
Sbjct: 125 LAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPN 184
Query: 211 RTSHDMLIKKL 221
+++L+ L
Sbjct: 185 VPVYNVLLHGL 195
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 34/194 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA ++E +F +++ G +V F+ L+ L E + A++ F + L
Sbjct: 231 CKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML-------- 282
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
G KP+ YTYT ++ G C+ + +A EL + + + + V L+
Sbjct: 283 --------EAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAG 334
Query: 166 --QRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+R M G P +TFN +I C +GK+ +A L+ M G
Sbjct: 335 YCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAA 394
Query: 210 SRTSHDMLIKKLDQ 223
++ +LI L +
Sbjct: 395 DSCTYRILIAGLSR 408
>gi|413950866|gb|AFW83515.1| hypothetical protein ZEAMMB73_465290 [Zea mays]
Length = 478
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 21/141 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+E+A + N+ KPDV +Y I+DG C+ GR EA+++ +E + + + VVT
Sbjct: 179 AAHIEDALRLFRNIP----KPDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVT 234
Query: 161 LIQLLQRL--------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L EMG P +T++++I LC G+ AL LL M
Sbjct: 235 YTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMI 294
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+ K+P+ ++ +I L ++
Sbjct: 295 KEKKLPNMITYSSVIDGLCKE 315
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA +M + + P V TYT ++ + G ++A+++ +E RGV+ N+VT
Sbjct: 211 GRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTY 270
Query: 162 IQLLQRLEMG-----------------HIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L G +P IT+++VI LC + +A+ +L M
Sbjct: 271 SSLIDGLCKGGRATSALELLDRMIKEKKLPNMITYSSVIDGLCKEHMLSEAMEILDRMRL 330
Query: 205 HGKIP 209
G+ P
Sbjct: 331 QGRKP 335
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++A ++ + G+ P++ TY++++DG CK GR+ A+ELL+ I+ N++T
Sbjct: 246 GCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMIKEKKLPNMITY 305
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++L R+ + G P F +I LC G+ +A L M
Sbjct: 306 SSVIDGLCKEHMLSEAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVL 365
Query: 205 HGKIPSRTSHDM 216
G P+R + +
Sbjct: 366 AGIEPNRVTWSL 377
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV---TQNV 158
G V+ A ++L + +G +PDVYTY+ +++ C G EA ++N+ ++ G T
Sbjct: 315 GHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTF 374
Query: 159 VTLI-------QLLQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI QL + L++ G P TFN +I ALC VG H A+ L M
Sbjct: 375 NTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKS 434
Query: 205 HGKIPSRTSHDMLIKKL 221
G P ++++LI L
Sbjct: 435 SGCTPDEVTYNILIDNL 451
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 34/169 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L+E I N + G + FN L++AL N+ +EEA ++
Sbjct: 352 LEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQ----------------LEEALDLAR 395
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+ GL P+VYT+ +++ CKVG + A+ L E G T
Sbjct: 396 ELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCT----------------- 438
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +I LC GK+ KAL LL M G S +++ +I L
Sbjct: 439 -PDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGL 486
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L+E +D+ + G + +V FN L+ AL + + AV+ F
Sbjct: 387 LEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEE--------------- 431
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------- 161
+K+ G PD TY ++D C G+ +A++LL E G Q+ VT
Sbjct: 432 -MKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRR 490
Query: 162 -----IQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
++ ++++ I R ITFN +I LC +I A L+ M G P+ +++
Sbjct: 491 RIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYN 550
Query: 216 MLIKKLDQQ 224
++ +Q
Sbjct: 551 SILTHYCKQ 559
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + +GRV +A + DG +PD T++ ++G C+ G + A+++L ++ G
Sbjct: 272 LINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEG 331
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+V T ++ Q ++ G +P T TFN +I ALC ++ +AL
Sbjct: 332 CEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEAL 391
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L + G P+ + ++LI L
Sbjct: 392 DLARELTVKGLSPNVYTFNILINAL 416
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 36/198 (18%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMVGRVE 105
+ + G V FN ++ AL + TAV LM G VE
Sbjct: 184 YTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVE 243
Query: 106 E-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
E A + + G P T +++G+CK+GR +A+ + + I G + VT
Sbjct: 244 EGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVT 303
Query: 161 LIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ L + GH+ P T++ VI LC G++ +A ++ M
Sbjct: 304 FSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMV 363
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ G +P T+ + LI L
Sbjct: 364 DSGCLPDTTTFNTLIVAL 381
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 104/232 (44%), Gaps = 41/232 (17%)
Query: 15 LLVDSPSRSPSAAESLDL-KE-----NPRS-LQAQRFVDKI-KASPLKERIDIFNSIKKD 66
+L+D+ S A++LDL KE P+S + +D + K ++E ++F+ +
Sbjct: 446 ILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVT 505
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G + FN L+ L N + R+++A E++ + ++GL+P+ TY
Sbjct: 506 GIGRNAITFNTLIDGLC--NAE--------------RIDDAAELVDQMISEGLQPNNVTY 549
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEM 170
+I+ +CK G ++A ++L G +VVT ++LL+ + M
Sbjct: 550 NSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRM 609
Query: 171 -GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G P +N VIQ+L AL L M E G P ++ ++ + L
Sbjct: 610 KGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGL 661
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 20/137 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E AY + + G++PDV T+ ++D C+ ++ A+ +L E V + T
Sbjct: 180 LESAY---TEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTT 236
Query: 164 LLQ------------RL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L++ RL EMG P ++T N +I C +G++ AL + G
Sbjct: 237 LMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADG 296
Query: 207 KIPSRTSHDMLIKKLDQ 223
P R + + L Q
Sbjct: 297 FEPDRVTFSTFVNGLCQ 313
>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 669
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++AY+ L N+ G PD +YT ++ G C+ GR A ELL E + +
Sbjct: 330 GRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCP------ 383
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN I LC G I +A+ L+ LM E+G +++ L+
Sbjct: 384 ------------PNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGF 431
Query: 222 DQQ 224
Q
Sbjct: 432 CVQ 434
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 20/143 (13%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ + GR++ A ++ ++ + PD YTYT I+ G C GR +A+ LL++ ++RG
Sbjct: 117 AGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQ 173
Query: 156 QNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLL 198
+VVT LL+ + EM G P +T+N +I +C G++ A +
Sbjct: 174 PSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEI 233
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L + +G P S+ ++K L
Sbjct: 234 LNRLSSYGFQPDIVSYTTVLKGL 256
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 20/150 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V FF G VEEA E++ + G P++ T+ ++DG K S EA+ELL+ +
Sbjct: 495 VSFFCQK---GFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVS 551
Query: 152 RGVTQNVVTL----------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHK 194
+GV+ + +T IQ+L ++ MG P+ +N ++ ALC + +
Sbjct: 552 KGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQ 611
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ M +G +P+ +++ +LI+ L +
Sbjct: 612 AIDFFAYMVSNGCMPNESTYIILIEGLAHE 641
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+S E +++ + ++ G ++ +N ++ M E GRV++A
Sbjct: 187 CKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIING--MCRE--------------GRVDDA 230
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------ 161
E+L + + G +PD+ +YT ++ G C R ++ L E +++ N VT
Sbjct: 231 KEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRF 290
Query: 162 ----------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
IQ+LQ++ + G P T N VI A+C G++ A L M +G P
Sbjct: 291 FCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPD 350
Query: 211 RTSHDMLIKKL 221
S+ +++ L
Sbjct: 351 TISYTTVLRGL 361
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
EA +L ++ G P++ TY I++G C+ GR ++A E+LN G ++V+ +L
Sbjct: 194 EAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVL 253
Query: 166 QRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L +P +TF+ +++ C G + +A+ +L M +HG
Sbjct: 254 KGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCT 313
Query: 209 PSRTSHDMLIKKLDQQ 224
P+ T +++I + +Q
Sbjct: 314 PNTTLCNIVINAICKQ 329
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A +L ++ G +P V TYT +++ CK EAM +L+E +G T N+VT
Sbjct: 155 GRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTY 214
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++L RL G P +++ V++ LC + +L M +
Sbjct: 215 NVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVD 274
Query: 205 HGKIPSRTSHDMLIK 219
+P+ + DML++
Sbjct: 275 KKCVPNEVTFDMLVR 289
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A +++ + G + TY A++ GFC GR + A+EL N T TL
Sbjct: 400 GLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTL 459
Query: 162 IQLL---QRLE------MGHIPR-----TITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ L +RL+ G I + +TFN ++ C G + +A+ L+ M EHG
Sbjct: 460 LTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGC 519
Query: 208 IPSRTSHDMLIKKLDQ 223
P+ + + L+ + +
Sbjct: 520 TPNLITFNTLLDGITK 535
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113
+E I + ++++ G V +N +L AL E D A+ FF AY
Sbjct: 575 EEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFF-----------AY----- 618
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ ++G P+ TY +++G G EA +L+E +GV
Sbjct: 619 MVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKGV 659
>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
Length = 584
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 41/201 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SN 97
+ ++++++K G + +V +N L+ AL + D A K S
Sbjct: 89 VPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSG 148
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+GRVEEA L P +Y A++ C R E ++NE ++RG+ N
Sbjct: 149 MCKLGRVEEARGFLAETV-----PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPN 203
Query: 158 VVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
VVT +L R+ MG P +TF +++ GK+H AL +
Sbjct: 204 VVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWH 263
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M + G PS S+++LI+ L
Sbjct: 264 WMVDEGWAPSTISYNVLIRGL 284
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 19/140 (13%)
Query: 98 HLMVG--RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
H + G R+ E + ++ + GL+P+V TYT I+D FCK A +L + G T
Sbjct: 177 HALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCT 236
Query: 156 QNVVTLIQLLQ----------RLEMGH-------IPRTITFNNVIQALCGVGKIHKALLL 198
NV+T L++ L M H P TI++N +I+ LC +G + AL
Sbjct: 237 PNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDF 296
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
M + +P+ T++ L+
Sbjct: 297 FNSMKRNALLPNATTYSTLV 316
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G ++ A + ++K + L P+ TY+ ++DGF G + AM + NE G NVV
Sbjct: 287 IGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVV 346
Query: 161 LI----------------QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ ++ M + P T+TFN +I LC G++ +AL + M
Sbjct: 347 YTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMR 406
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+G P+ +++ L+ L ++
Sbjct: 407 RNGCHPNDRTYNELLHGLFRE 427
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 43/187 (22%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLL--------------MALVMLNE--------QDTAVKF 94
+++F+ ++++G + + +N+LL M + MLN +T +
Sbjct: 399 LNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINC 458
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
M + A +L + G++PD +T+ AI+ +CK G+ + A LL +
Sbjct: 459 LCQMCMR---KHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNC 515
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+NVV + +I LC GK+ A++ L M G P+ +
Sbjct: 516 PRNVV------------------AYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATW 557
Query: 215 DMLIKKL 221
++L++ +
Sbjct: 558 NVLVRAI 564
>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Vitis vinifera]
Length = 624
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 58/221 (26%)
Query: 40 QAQRFVDKIKASPL-------------------KERIDIFNSIKKDGTNWSVSDFNDLLM 80
QAQ F DK+ + E +F +++ G V +N LL
Sbjct: 203 QAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLE 262
Query: 81 ALVMLNEQDTAVKFF----SNHLM---------------VGRVEEAYEMLMNVKNDGLKP 121
AL D A K F SN L V + A+++L ++ L P
Sbjct: 263 ALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVP 322
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181
+V+TY I+ CK + +EA +LL+E IERGV+ ++ + N
Sbjct: 323 NVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSY-------------------N 363
Query: 182 VIQAL-CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IQA C +++KAL L+ M + +P R +++M++K L
Sbjct: 364 AIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKML 404
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR+EE ++L +++ G++PD Y+Y ++DG+C+ G +A E+ + G+
Sbjct: 372 LGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAAT--- 428
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
T+T+N +++ C + I AL L FLM + G P+ S L+
Sbjct: 429 ---------------TLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDG 473
Query: 221 L 221
L
Sbjct: 474 L 474
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR+ EA E+L +K PD TY + DG+CK+G+ A L+N+ G +V
Sbjct: 512 IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSV-- 569
Query: 161 LIQLLQRLEMGHI---------------------PRTITFNNVIQALCGVGKIHKALLLL 199
++ GH P +T+ +I C G +H+A L
Sbjct: 570 --EMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLY 627
Query: 200 FLMYEHGKIPS 210
F M +G P+
Sbjct: 628 FEMVNNGMNPN 638
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNV 158
+G E+A +L +++ GL P+V TYT ++ G+CK GR EA ++ E E G V V
Sbjct: 266 MGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEV 325
Query: 159 VTLIQL---LQRLEMGHIPRT-------------ITFNNVIQALCGVGKIHKALLLLFLM 202
+ + QR M R +N +I LC +G++ + +L M
Sbjct: 326 AYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM 385
Query: 203 YEHGKIPSRTSHDMLI 218
+ G P + S++ LI
Sbjct: 386 EDVGMRPDKYSYNTLI 401
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 35/175 (20%)
Query: 31 DLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
D+ P +D + +++ ++ + ++G + +N LL L+ D
Sbjct: 387 DVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAID 446
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
A++ + LM+ R G+ P+ + + ++DG K G++ +A+ L E
Sbjct: 447 DALRLW--FLMLKR--------------GVAPNEISCSTLLDGLFKAGKTEQALNLWKET 490
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ RG+ +NV ITFN VI LC +G++ +A LL M E
Sbjct: 491 LARGLAKNV------------------ITFNTVINGLCKIGRMAEAEELLDRMKE 527
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ +A + +++N PD +TY++++ G G +EA L + + G+T N++T
Sbjct: 714 GRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITY 773
Query: 162 ----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L +L+ I P IT+N +I C GK +A L M E
Sbjct: 774 NSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVE 833
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + IK LDQ
Sbjct: 834 EGYM------EEAIKLLDQ 846
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 19/136 (13%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN------------ 97
A L +++F+ + K G S+ N LL LV + A +
Sbjct: 161 AGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFT 220
Query: 98 -------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
+ GRV +A E + ++ GL+ ++ Y A+MD +C +G + +A +L
Sbjct: 221 VAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQ 280
Query: 151 ERGVTQNVVTLIQLLQ 166
+G++ NVVT L++
Sbjct: 281 RKGLSPNVVTYTLLVK 296
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 21/150 (14%)
Query: 21 SRSPSAAESLD----LKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDF 75
R A E LD L+ P SL + D K L + N ++ G SV F
Sbjct: 513 GRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMF 572
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
N F + H + + + ++ + GL P++ TY A++ G+CK
Sbjct: 573 NS----------------FITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK 616
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
G +EA L E + G+ NV L+
Sbjct: 617 EGNLHEACNLYFEMVNNGMNPNVFICSALM 646
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+ L +++FN ++ G + + +N L+ + A K + G +EEA
Sbjct: 781 CKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEA 840
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
++L + + + P+ TY ++ G+ K G E +L +E RG+
Sbjct: 841 IKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGL 887
>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF------------- 94
+K+ +E +D++ ++ DG +V ++ L++A + +T V
Sbjct: 182 VKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNV 241
Query: 95 FSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+S + + GR+EEAY +L ++ +G KPDV T T ++ C GR +A ++ +
Sbjct: 242 YSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWK 301
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
+ VT I LL + G+ +++ + ALC VG+
Sbjct: 302 MKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGR 361
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +AL + M + G IP + S++ LI
Sbjct: 362 VDEALDVFDEMKQKGIIPQQYSYNSLI 388
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117
+I+N++K DG N +V + + AL VGRV+EA ++ +K
Sbjct: 332 EIWNALKADGYNDNVVSYTAAVDALCQ----------------VGRVDEALDVFDEMKQK 375
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI-------------QL 164
G+ P Y+Y +++ GF K R N A+EL N G T N T + +
Sbjct: 376 GIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKA 435
Query: 165 LQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
L+R E+ G +P + N V+ L G++ A + + G P ++ M+IK
Sbjct: 436 LKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIK 494
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 18/124 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR EA+++ +K L+P TY ++ G + G+ E M+LL G+ N
Sbjct: 534 AGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLL-----EGMNSNSFP 588
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P IT+N V+ LC G+++ AL +L+ M +G +P +S++ ++
Sbjct: 589 -------------PNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYG 635
Query: 221 LDQQ 224
L ++
Sbjct: 636 LVKE 639
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 37/195 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------- 99
+K+ L E I+++ + +G + + + LL L+ + A F L
Sbjct: 847 VKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNC 906
Query: 100 -----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ G E+ E+ ++ G+ PD+ +YT ++D C GR N+ +
Sbjct: 907 AIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFK- 965
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
Q +MG P IT+N +I L G++ +AL L M + G
Sbjct: 966 -----------------QLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIA 1008
Query: 209 PSRTSHDMLIKKLDQ 223
P+ +++ LI L +
Sbjct: 1009 PNLYTYNSLILYLGK 1023
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ + + + GL+PD+ TY ++ G K GR EA+ L N+ ++G+ N+ T
Sbjct: 955 GRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTY 1014
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G P T+N +I+ G A M
Sbjct: 1015 NSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIV 1074
Query: 205 HGKIPSRTSH 214
G P+ +++
Sbjct: 1075 GGCRPNSSTY 1084
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 35/177 (19%)
Query: 27 AESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
AE ++ + P L +D + KA E IF +K+ + +N LL L
Sbjct: 510 AEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGR- 568
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
G+V+E ++L + ++ P++ TY ++D CK G N A+++
Sbjct: 569 ---------------EGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDM 613
Query: 146 LNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
L +T N G +P ++N V+ L G++ +A + M
Sbjct: 614 LYS-----MTMN-------------GCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQM 652
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 97 NHLMVGRVEE-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L+ G V+E A E+ +K G PD +TY I+D K R + +++ E
Sbjct: 770 NALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHN 829
Query: 152 RGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHK 194
+G VT ++ Q + G P T+ ++ L G I
Sbjct: 830 KGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIED 889
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A L M E G P+ +++L+
Sbjct: 890 AEALFDEMLECGCEPNCAIYNILL 913
>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
Length = 817
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 20/147 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
TA+ F G+VEEA E+ ++ G+ P+V TY ++DG GR +EA +
Sbjct: 257 TAINAFCKG---GKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKM 313
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+ERGV ++T L++ L E G P I +NN+I +L G +
Sbjct: 314 VERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSL 373
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIK 219
+KA+ + LM G + ++++ LIK
Sbjct: 374 NKAIEIKDLMVSKGLSLTSSTYNTLIK 400
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L + +VEEA + + K +G+ PDVYTY+ ++DG CK R+ E +L +E + +
Sbjct: 578 LNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQ--- 634
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T+ +N++I A C G++ AL L M G P+ ++ LI
Sbjct: 635 ---------------PNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 679
Query: 219 KKL 221
K +
Sbjct: 680 KGM 682
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 35/167 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+D+F + G S + N LL +LV E + F +V
Sbjct: 203 LDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAF-----------------HVVC 245
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G+ PDVY +T ++ FCK G+ EA+EL ++ E GV +P
Sbjct: 246 KGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGV------------------VPNV 287
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+T+N VI L G+ +A + M E G P+ ++ +L+K L +
Sbjct: 288 VTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTK 334
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
++ RVEEA +L ++ +GL+P+V+ YTA++DG+ K+G+ + LL E + V
Sbjct: 684 IISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH---- 739
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P IT+ +I G + +A LL M E G +P ++ I
Sbjct: 740 --------------PNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFI 784
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 92/233 (39%), Gaps = 45/233 (19%)
Query: 16 LVDSPSRSPSAAESLDLKE----NPRSLQAQRFVDKIKASPLKERIDIFNSIKKD----G 67
L+DS + S +++++K+ SL + + IK + DI + K+ G
Sbjct: 363 LIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIG 422
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-------------------GRVEEAY 108
N + F ++ L + D+A++F L+ G+ +A
Sbjct: 423 FNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAV 482
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + N G D T A++ G C+ G+ E + E + RG +
Sbjct: 483 ELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMD----------- 531
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+++N +I CG K+ +A + + M + G P ++ +LI+ L
Sbjct: 532 -------RVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGL 577
>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g38730-like [Glycine max]
Length = 587
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 34/204 (16%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------NHLM------- 100
E + I N ++++G N + +N L+ A++ FS NH+
Sbjct: 249 EALSIQNRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKNATPNHVTYTTLIDG 308
Query: 101 ---VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+EEA +M ++ GL P V TY +I+ C+ GR +A +LLNE ER + +
Sbjct: 309 YCKTNELEEALKMCKLMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLNEMSERKLQAD 368
Query: 158 VVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+T L+ + LE G P T+ +I C ++ A L+F
Sbjct: 369 NITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNELESAKELMF 428
Query: 201 LMYEHGKIPSRTSHDMLIKKLDQQ 224
M + G PS ++ ++ +++
Sbjct: 429 SMLDAGFTPSYCTYSWIVDGYNKK 452
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE A ++L + G+ D++TY ++ +CK G EA+ + N G+ ++V+
Sbjct: 210 GDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGMHYEALSIQNRMEREGINLDIVSY 269
Query: 162 IQLL----------QRLEM-----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ + + M P +T+ +I C ++ +AL + LM G
Sbjct: 270 NSLIYGFCKEGRMREAMRMFSEIKNATPNHVTYTTLIDGYCKTNELEEALKMCKLMEAKG 329
Query: 207 KIPSRTSHDMLIKKLDQ 223
P +++ +++KL Q
Sbjct: 330 LYPGVVTYNSILRKLCQ 346
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSI-KKDGTNWSVSDFNDLLMALVMLNEQD---TAVKFF 95
+A + ++A L + +NSI +K + + D N LL + Q T
Sbjct: 317 EALKMCKLMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLNEMSERKLQADNITCNTLI 376
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ + +G ++ A + + GLKPD +TY A++ GFCK A EL+ ++ G T
Sbjct: 377 NAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNELESAKELMFSMLDAGFT 436
Query: 156 QNVVT 160
+ T
Sbjct: 437 PSYCT 441
>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 41/188 (21%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
IFN++ + G N +N ++ + + D A+ F M+ KN
Sbjct: 305 IFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKK--------------MHCKN-- 348
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------I 162
+ P+V TYT+++DG CK G+ + A++L++E +RGV +++T I
Sbjct: 349 IIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAI 408
Query: 163 QLLQRLE---------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
LL +L+ G+ + +IQ C G ++AL LL M ++G+IP +
Sbjct: 409 ALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKT 468
Query: 214 HDMLIKKL 221
++++I L
Sbjct: 469 YEIIILSL 476
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 34/204 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P + +D + K + E D+++ + +G + V ++ L+
Sbjct: 176 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALI--------------- 220
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
S +VG++++A ++ + + +KPDVYT+ ++DGFCK G+ E + +++G+
Sbjct: 221 -SGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGI 279
Query: 155 TQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALL 197
NVVT L+ + G P T ++N +I C + K+ +A+
Sbjct: 280 KPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMN 339
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
L M+ IP+ ++ LI L
Sbjct: 340 LFKKMHCKNIIPNVVTYTSLIDGL 363
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F +I K G + +V L+ L + T + VG+ A ++L V
Sbjct: 117 VFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCK---VGQARAALQLLRRVDGKL 173
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------I 162
++P+V Y I+D CKV NEA +L +E + G++ +VVT I
Sbjct: 174 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAI 233
Query: 163 QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
L ++ + +I P TFN ++ C GK+ + + +M + G P+ ++
Sbjct: 234 DLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTY 286
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC-KVGRSNEAMELLNEAIERGVTQNVV 159
+G+ ++ + N+ G P+V T T ++ G C KV L+N + G +
Sbjct: 108 LGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGT----LINGLCKVGQAR--- 160
Query: 160 TLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+QLL+R++ + P + +N +I ++C V +++A L M G P ++ LI
Sbjct: 161 AALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALI 220
>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
Length = 795
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V E +LM ++ LKPD Y+Y ++DG+C+ G S++A + ++ + +G+
Sbjct: 221 GQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIE------ 274
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +++ LC G AL L LM + G P+ + L+ L
Sbjct: 275 ------------PTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGL 322
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V +A + + + PD +TY ++ GF G NEA L +E + +G+ N+ T
Sbjct: 571 GKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTY 630
Query: 162 IQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L G IP +T+N +I C G +AL L M +
Sbjct: 631 NALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLK 690
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G PS ++ LI +Q
Sbjct: 691 EGISPSIITYSSLINGFCKQ 710
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 73/180 (40%), Gaps = 33/180 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K + +++ I G N S+ FN ++ L + E D A + F R+EE
Sbjct: 323 FKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFK------RMEEL 376
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA---------------MELLNEAIER 152
G KPD TY + DG+CKVG EA +E+ N I
Sbjct: 377 ----------GCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIVG 426
Query: 153 GVTQNVVT-LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
T ++ LI LL ++ G P +T+ +I C G++ KA F M G P+
Sbjct: 427 LFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFEMIGKGFAPN 486
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G EA ++ + +G+ P + TY+++++GFCK EAM+LLNE V Q + T
Sbjct: 676 GSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNEMKASNVDQTIATF 735
Query: 162 IQLLQR-LEMGHIPRTITFNNVIQALC 187
+L++ ++ G + + +N++ C
Sbjct: 736 SKLVEGCIQHGDVKKMSKLHNMMHMAC 762
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 36/210 (17%)
Query: 30 LDLKENPRSLQAQRFVDKIKASPLKER-IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
LDLK P S VD L + ++ + + + G +V +N LL L +
Sbjct: 236 LDLK--PDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDY 293
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
A++ + HLM+ R G+ P+ Y ++DG K+G + A+ L ++
Sbjct: 294 KDALRLW--HLMLQR--------------GVTPNEVGYCTLLDGLFKMGDFSRALTLWDD 337
Query: 149 AIERGVTQNVV---TLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGK 191
+ RG+ +++ T+I L ++ E+G P IT+ + C VG
Sbjct: 338 ILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGN 397
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +A + M + PS ++ LI L
Sbjct: 398 VEEAFKIKEKMEKEEIFPSIEMYNSLIVGL 427
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 21/132 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + + GL P+V TY ++DG+CK G EA++L + ++ G++ +++T
Sbjct: 641 GYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITY 700
Query: 162 ----------------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYE 204
++LL ++ ++ +TI TF+ +++ G + K L +M
Sbjct: 701 SSLINGFCKQSDVEEAMKLLNEMKASNVDQTIATFSKLVEGCIQHGDVKKMSKLHNMM-- 758
Query: 205 HGKIPSR--TSH 214
H PS TSH
Sbjct: 759 HMACPSAGITSH 770
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV-------------KFFSNHL 99
+K + +F+++ K G S+ N LL LV E +AV F+ +
Sbjct: 12 VKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPDVFTCAI 71
Query: 100 MV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
MV G+VE A E + ++ G + + +Y +++DG+ +G A +L E+G
Sbjct: 72 MVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKG 131
Query: 154 VTQNVVTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
V +N VTL L++ E G + + +I C VGK+ A
Sbjct: 132 VMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDA 191
Query: 196 L 196
+
Sbjct: 192 I 192
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-------------- 166
P+ Y M G CK G+ N+A T + T L+
Sbjct: 555 PNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNL 614
Query: 167 RLEM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
R EM G +P T+N ++ LC G + +A L ++ G IP+ ++++LI
Sbjct: 615 RDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILI 669
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 97/210 (46%), Gaps = 31/210 (14%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA--------- 91
A +D+++ L+ + I+NS+ + ++ A+ ++ E + A
Sbjct: 487 ANELLDEMRKKGLQLNVCIYNSMVN-----GICKAGNIEQAIKLMKEMEVAGIDPDAITY 541
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+ +G +++A+++L + + GL+P V T+ +M+GFC +G + LL +E
Sbjct: 542 TTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLE 601
Query: 152 RGVTQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHK 194
+G+ + +T L+++ G P + T+N +I+ C + +
Sbjct: 602 KGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKE 661
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M E G +P+ TS++ LIK+ ++
Sbjct: 662 AWFLYKEMIEKGYVPTVTSYNALIKRFYKK 691
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 34/152 (22%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G +W+ + +N ++ +L L G+V+EA+ +LM + PDV +Y
Sbjct: 253 GISWNTTSYNIIIYSLCRL----------------GKVKEAHRLLMQMDFRSSTPDVVSY 296
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186
+ ++DG+C +G +A++L+++ +G+ P T+N++I L
Sbjct: 297 STVIDGYCHLGELKKALKLMDDMQIKGLK------------------PNRYTYNSIILLL 338
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
C +GK +A +L M IP + LI
Sbjct: 339 CKIGKSFEAEKVLREMMSQKIIPDNVVYTTLI 370
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 52/169 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V E + + + GLKPD TYT ++D +CK G A L NE ++ G+T N+VT
Sbjct: 412 GKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTY 471
Query: 162 ---------------------------------------------------IQLLQRLEM 170
I+L++ +E+
Sbjct: 472 GALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEV 531
Query: 171 GHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
I P IT+ VI A C +G I KA LL M + G P+ + ++L+
Sbjct: 532 AGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G+ EA ++L + + + PD YT ++ GF K+G A + +E + + ++ + +T
Sbjct: 341 IGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYIT 400
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+Q EM G P +T+ +I C G++ A L M
Sbjct: 401 YTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV 460
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ G P+ ++ LI L
Sbjct: 461 QMGMTPNIVTYGALIDGL 478
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 34/176 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K +++ + ++++G ++ +N L+ L V R EEA
Sbjct: 369 CKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCA----------------VRRPEEA 412
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
E++ ++ G+ P++YTYT + G CK+ R + A E+ NEA+ RG+
Sbjct: 413 LELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLK------------ 460
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P +T+N ++ C ++ +A+ +L M+++ P ++ LI+ L Q
Sbjct: 461 ------PNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQ 510
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 39/210 (18%)
Query: 33 KENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD--FNDLLMALVMLNEQDT 90
+E RS+ + ++ KE ++ FN +K+ G + D +N +L++LV + D
Sbjct: 247 REITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDM 306
Query: 91 AVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
A F+ + G ++E+A ++L ++ + PDV TYT ++
Sbjct: 307 AENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVIS 366
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191
CK +A +L + E G N+ T+N +IQ LC V +
Sbjct: 367 ALCKRKMIEQAYGVLQKMRENGCEPNIY------------------TYNALIQGLCAVRR 408
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+AL L+ LM + G P+ ++ +L L
Sbjct: 409 PEEALELVTLMEQGGVPPNIYTYTILTHGL 438
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 16/96 (16%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +K G +S SD+ +A+ L+ G +EEA +L + N G
Sbjct: 555 FYRRMKDRGFAYSASDY---YLAIHCLS-------------TAGEMEEAQALLYEMINKG 598
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
P++ TY ++ GFC+ GR ++A +LN IE G+
Sbjct: 599 YSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGI 634
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG ++A +K+ G Y + G EA LL E I +G +
Sbjct: 546 VGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYS----- 600
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P T+N +I+ C G++ A +L M E+G P S+++LIK+
Sbjct: 601 -------------PNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKE 647
Query: 221 LDQQ 224
Q
Sbjct: 648 FHNQ 651
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
L +T +K F GR+++A ML + +G+ PD +Y ++ F GR+ +A +
Sbjct: 603 LTTYNTMIKGFCRQ---GRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQ 659
Query: 145 LLNEAIERGVTQNVVTLIQ 163
L A+ERGV N +IQ
Sbjct: 660 LYATALERGVVLNPKPVIQ 678
>gi|356570227|ref|XP_003553291.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Glycine max]
Length = 732
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 20/138 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
R+ EA + + L PDV TY A++DG CK R A+EL ++ RG+ N VT
Sbjct: 547 RIYEAGRLFRLMLFRKLVPDVVTYNALIDGCCKTLRVERALELFDDMKRRGLVPNRVTYG 606
Query: 161 -----------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ +QRL G +P + ++ +I ALC G++ +A L +
Sbjct: 607 CFIRYYCVVNEIDKGVEMLREMQRLGHG-VPGSSSYTPIIHALCEAGRVVEAWWFLVELV 665
Query: 204 EHGKIPSRTSHDMLIKKL 221
E G +P ++ ++ +L
Sbjct: 666 EGGSVPREYTYGLVCDRL 683
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
I N +G + DF L+A L +Q T + G+++ A +L ++
Sbjct: 131 IINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSS 190
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----------------LI 162
++P++ Y+A++DG CK G ++A+ L ++ ERG+ + VT +
Sbjct: 191 VQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVT 250
Query: 163 QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
QLL ++ ++ P TFN +I ALC G+I +A +L +M + G+ P +++ L++
Sbjct: 251 QLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALME 308
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
GR+ EA +L + G KPD+ TY A+M+G+C +EA EL N ++RG+ +V+
Sbjct: 279 GRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNY 338
Query: 160 -TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI + +M +P ++N++I LC G+I LL M+
Sbjct: 339 NVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHG 398
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+ P ++++LI L ++
Sbjct: 399 SAQPPDVVTYNILIDALCKE 418
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA +L+ + G+KP++ TY A+MDG+C N A ++ N ++ G+ +++
Sbjct: 419 GRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNY 478
Query: 162 IQLLQRL--------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EM H IP ++N++I LC +G+I LL M +
Sbjct: 479 NVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCD 538
Query: 205 HGKIPSRTSHDMLI 218
G+ P ++++L+
Sbjct: 539 SGQSPDVITYNILL 552
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 35/202 (17%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLM--- 100
DIFN + K G + ++N L+ D A+ F N L+
Sbjct: 461 DIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGL 520
Query: 101 --VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE------- 151
+GR+ E+L + + G PDV TY ++D FCK ++A+ L + +E
Sbjct: 521 CNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFY 580
Query: 152 --RGVTQNVVTLIQL------LQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ N+ +L L+ L M G P T+ +I ALC G +A+LLL M
Sbjct: 581 TNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKM 640
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
++ + P + +++I L Q+
Sbjct: 641 EDNDRPPDAITFEIIIGVLLQR 662
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALV---MLNEQDTAVKFFSNHLMV-------- 101
+ E ++FN + K G V ++N L+ M++E K N +V
Sbjct: 316 VHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNS 375
Query: 102 --------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
GR+ ++L + PDV TY ++D CK GR EA+ +L +++G
Sbjct: 376 LIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKG 435
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
V N+VT ++ + ++ G P + +N +I C + +A+
Sbjct: 436 VKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAI 495
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
+L M IP S++ LI L
Sbjct: 496 VLFKEMRHKNLIPDIASYNSLIDGL 520
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 34/151 (22%)
Query: 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132
S F+ LL A+V + TA+ F+ +++ G+ P + T+T +++
Sbjct: 56 SVFDKLLGAIVRMGHYPTAISLFTQ----------------LQSKGISPSIATFTILINC 99
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKI 192
+ + A LL L+ G+ P +TFN +I C G I
Sbjct: 100 YFHQSHTAFAFSLLATI------------------LKSGYQPNLVTFNTIINGFCINGMI 141
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
KAL + G + + ++ LI L +
Sbjct: 142 FKALDFCQNLLAQGYLFDQFTYGTLINGLSK 172
>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G ++ +E+ +K G+ P++YTY +++ +C+ G+ + A ++ +E +RGV N VT
Sbjct: 191 GYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTY 250
Query: 161 --LI-------------QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI LL+R++ HI P T TFN ++ LC G++ KAL L +
Sbjct: 251 NILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKL 310
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G P+ ++++LI +
Sbjct: 311 IGLCPTLVTYNILISGFSK 329
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 95/212 (44%), Gaps = 35/212 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------ 101
+++ L++ +D F + G + S FN+ L L D FF+ +L
Sbjct: 49 LQSQLLEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVY 108
Query: 102 ------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G V + +E+L ++ G+ P+V+ YT +++ C+ G ++A + +
Sbjct: 109 SFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRM 168
Query: 150 IERGVTQN--VVTLI--------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
+ G+ N + T++ +L Q++++ G +P T+N++I C GK+
Sbjct: 169 DDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKL 228
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A + + + G + ++++LI L ++
Sbjct: 229 SLAFKVFDEISKRGVACNAVTYNILIGGLCRK 260
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A L +K GL P + TY ++ GF KVG S+ EL+ E +RG++ + VT
Sbjct: 296 GQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTY 355
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TI N +++ I KA + LM G +P + ++ +LI L
Sbjct: 356 --------------TILMNTFVRS----DDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGL 397
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E+AYEM +K GL PD +TY ++ G C G EA +L +
Sbjct: 368 IEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMV------------- 414
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
EM P + +N +I C +KAL L M ++G P+ S+
Sbjct: 415 -----EMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASY 460
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+ A E+L + G+ P+V TY+ ++DGFCKV R +EA +LL + + +G+ VVT
Sbjct: 268 GKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTY 327
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L + P +T+N +++ALC ++ A L M
Sbjct: 328 NILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIA 387
Query: 205 HGKIPSRTSHDML 217
G P ++D L
Sbjct: 388 KGCPPDAITYDTL 400
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+E AYE+ + G P +Y ++DGFCK A ++ ++ + NVVT
Sbjct: 199 RIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYT 258
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L + G P T++ +I C V ++ +A LL M
Sbjct: 259 TLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ 318
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ ++++L+ L
Sbjct: 319 GIAPTVVTYNILLNSL 334
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++A + + G+KPD + Y ++ G C+ + EA L + +++ + NVV
Sbjct: 129 RIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVV--- 185
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+N +I LC +I A L M G +P+ S++ LI
Sbjct: 186 ---------------TYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLI 226
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V RV+EA+++L + G+ P V TY +++ C+ + +A +L +R VVT
Sbjct: 302 VRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVT 361
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLL 199
LL+ L EM G P IT++ + L GK+H+A L+
Sbjct: 362 YNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELM 417
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 34/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA L++ +++ + + G S + L+ L VG +EAY
Sbjct: 22 KAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCK----------------VGNFDEAY 65
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++L ++ K Y+ I++ CK+ R EA EL+ E + R + +T +++RL
Sbjct: 66 KLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELI-EKMARYAPPDALTYGPIVERL 124
Query: 169 --------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
EM G P +N V+ LC K+ +A LL M + P+
Sbjct: 125 CKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNV 184
Query: 212 TSHDMLIKKL 221
+++ LI L
Sbjct: 185 VTYNTLINGL 194
>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 418
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A EL +E ++ + N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L P IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A + I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYMPS 415
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR+EE ++L +++ G++PD Y+Y ++DG+C+ G +A E+ + G+
Sbjct: 372 LGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAAT--- 428
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
T+T+N +++ C + I AL L FLM + G P+ S L+
Sbjct: 429 ---------------TLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDG 473
Query: 221 L 221
L
Sbjct: 474 L 474
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ +A + +++N PD +TY++++ G G +EA L + + G+T N++T
Sbjct: 714 GRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITY 773
Query: 162 ----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L +L+ I P IT+N +I C GK +A L M E
Sbjct: 774 NSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVE 833
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ ++ +LI L Q
Sbjct: 834 EGIQPTVITYSILIYGLCTQ 853
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA+ + + + GL P++ TY +++ G CK G+ + A+ L N+ +G++ N +T
Sbjct: 749 GSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITY 808
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + +E G P IT++ +I LC G + +A+ LL M E
Sbjct: 809 NTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIE 868
Query: 205 HGKIPSRTSHDMLI 218
+ P+ ++ LI
Sbjct: 869 NNVDPNYITYCTLI 882
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 42/197 (21%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P + +D + KA ++ ++++ G +V FN ++ L
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCK---------- 511
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+GR+ EA E+L +K PD TY + DG+CK+G+ A L+N+ G
Sbjct: 512 ------IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGF 565
Query: 155 TQNVVTLIQLLQRLEMGHI---------------------PRTITFNNVIQALCGVGKIH 193
+V ++ GH P +T+ +I C G +H
Sbjct: 566 APSV----EMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLH 621
Query: 194 KALLLLFLMYEHGKIPS 210
+A L F M +G P+
Sbjct: 622 EACNLYFEMVNNGMNPN 638
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNV 158
+G E+A +L +++ GL P+V TYT ++ G+CK GR EA ++ E E G V V
Sbjct: 266 MGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEV 325
Query: 159 VTLIQL---LQRLEMGHIPRT-------------ITFNNVIQALCGVGKIHKALLLLFLM 202
+ + QR M R +N +I LC +G++ + +L M
Sbjct: 326 AYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM 385
Query: 203 YEHGKIPSRTSHDMLI 218
+ G P + S++ LI
Sbjct: 386 EDVGMRPDKYSYNTLI 401
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 35/175 (20%)
Query: 31 DLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
D+ P +D + +++ ++ + ++G + +N LL L+ D
Sbjct: 387 DVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAID 446
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
A++ + LM+ R G+ P+ + + ++DG K G++ +A+ L E
Sbjct: 447 DALRLW--FLMLKR--------------GVAPNEISCSTLLDGLFKAGKTEQALNLWKET 490
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ RG+ +NV ITFN VI LC +G++ +A LL M E
Sbjct: 491 LARGLAKNV------------------ITFNTVINGLCKIGRMAEAEELLDRMKE 527
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+ L +++FN ++ G + + +N L+ + G+ EA
Sbjct: 781 CKSGKLSRAVNLFNKLQSKGISPNGITYNTLI----------------DEYCKEGKTTEA 824
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
+++ + +G++P V TY+ ++ G C G EA++LL++ IE V N +T L+
Sbjct: 825 FKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIH 883
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 19/136 (13%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN------------ 97
A L +++F+ + K G S+ N LL LV + A +
Sbjct: 161 AGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFT 220
Query: 98 -------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
+ GRV +A E + ++ GL+ ++ Y A+MD +C +G + +A +L
Sbjct: 221 VAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQ 280
Query: 151 ERGVTQNVVTLIQLLQ 166
+G++ NVVT L++
Sbjct: 281 RKGLSPNVVTYTLLVK 296
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 21/150 (14%)
Query: 21 SRSPSAAESLD----LKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDF 75
R A E LD L+ P SL + D K L + N ++ G SV F
Sbjct: 513 GRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMF 572
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
N F + H + + + ++ + GL P++ TY A++ G+CK
Sbjct: 573 NS----------------FITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK 616
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
G +EA L E + G+ NV L+
Sbjct: 617 EGNLHEACNLYFEMVNNGMNPNVFICSALM 646
>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62914, mitochondrial; Flags: Precursor
gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats. EST gb|AA728420 comes from this gene
[Arabidopsis thaliana]
gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 528
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 19/150 (12%)
Query: 90 TAVKFFSNHLMVGRVEEAYEML-MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T + M+ R+ EA +ML + ++ D L P+V TY +++GFCK R ++ MEL E
Sbjct: 360 TYSSLINGFCMLDRLGEAKQMLELMIRKDCL-PNVVTYNTLINGFCKAKRVDKGMELFRE 418
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
+RG+ N VT L+ Q + +G P +T+N ++ LC GK
Sbjct: 419 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGK 478
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ KA+++ + P +++++I+ +
Sbjct: 479 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGM 508
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A + ++N G++P+V TY++++ C GR ++A LL++ IER + N+VT L
Sbjct: 270 DDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSAL 329
Query: 165 L------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ ++L I R+I T++++I C + ++ +A +L LM
Sbjct: 330 IDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDC 389
Query: 208 IPSRTSHDMLI 218
+P+ +++ LI
Sbjct: 390 LPNVVTYNTLI 400
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 45/238 (18%)
Query: 4 SAANSPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSI 63
+AA P FS R+ S S D +E R+ + L + I +F +
Sbjct: 22 NAATFPLSFSF----CRRRAFSGKTSYDYREVLRT--------GLSDIELDDAIGLFGVM 69
Query: 64 KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123
+ S+ +F+ LL A+ +N+ D + F E E+L G+ ++
Sbjct: 70 AQSRPFPSIIEFSKLLSAIAKMNKFDLVISF----------GEKMEIL------GISHNL 113
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------Q 166
YTY +++ FC+ R + A+ LL + ++ G ++VTL LL Q
Sbjct: 114 YTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQ 173
Query: 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+EMG+ P T+TF +I L K +A+ L+ M + G P ++ ++ L ++
Sbjct: 174 MVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKR 231
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ EA ++ + G +PD+ TY A+++G CK G ++ A+ LLN+ + NVV
Sbjct: 198 KASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYS 257
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++ L EM G P IT++++I LC G+ A LL M E
Sbjct: 258 TVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIER 317
Query: 206 GKIPSRTSHDMLI 218
P+ + LI
Sbjct: 318 KINPNLVTFSALI 330
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF------------- 94
+K+ +E +D++ ++ DG +V ++ L++A + +T V
Sbjct: 182 VKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNV 241
Query: 95 FSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+S + + GR+EEAY +L ++ +G KPDV T T ++ C GR +A ++ +
Sbjct: 242 YSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWK 301
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
+ VT I LL + G+ +++ + ALC VG+
Sbjct: 302 MKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGR 361
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +AL + M + G IP + S++ LI
Sbjct: 362 VDEALDVFDEMKQKGIIPQQYSYNSLI 388
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117
+I+N++K DG N +V + + AL VGRV+EA ++ +K
Sbjct: 332 EIWNALKADGYNDNVVSYTAAVDALCQ----------------VGRVDEALDVFDEMKQK 375
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI-------------QL 164
G+ P Y+Y +++ GF K R N A+EL N G T N T + +
Sbjct: 376 GIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKA 435
Query: 165 LQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
L+R E+ G +P + N V+ L G++ A + + G P ++ M+IK
Sbjct: 436 LKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIK 494
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 18/124 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR EA+++ +K L+P TY ++ G + G+ E M+LL G+ N
Sbjct: 534 AGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLL-----EGMNSNSFP 588
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P IT+N V+ LC G+++ AL +L+ M +G +P +S++ ++
Sbjct: 589 -------------PNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYG 635
Query: 221 LDQQ 224
L ++
Sbjct: 636 LVKE 639
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 37/195 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------- 99
+K+ L E I+++ + +G + + + LL L+ + A F L
Sbjct: 847 VKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNC 906
Query: 100 -----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ G E+ E+ ++ G+ PD+ +YT ++D C GR N+ +
Sbjct: 907 AIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFK- 965
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
Q +MG P IT+N +I L G++ +AL L M + G
Sbjct: 966 -----------------QLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIA 1008
Query: 209 PSRTSHDMLIKKLDQ 223
P+ +++ LI L +
Sbjct: 1009 PNLYTYNSLILYLGK 1023
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ + + + GL+PD+ TY ++ G K GR EA+ L N+ ++G+ N+ T
Sbjct: 955 GRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTY 1014
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L G P T+N +I+ G A M
Sbjct: 1015 NSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIV 1074
Query: 205 HGKIPSRTSH 214
G P+ +++
Sbjct: 1075 GGCRPNSSTY 1084
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 97 NHLMVGRVEE-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L+ G V+E A E+ +K G PD +TY I+D K R + +++ E
Sbjct: 770 NALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHN 829
Query: 152 RGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHK 194
+G VT ++ Q + G P T+ ++ L G I
Sbjct: 830 KGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIED 889
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A L M E G P+ +++L+
Sbjct: 890 AEALFDEMLECGCEPNCAIYNILL 913
>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G ++ +E+ +K G+ P++YTY +++ +C+ G+ + A ++ +E +RGV N VT
Sbjct: 191 GYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTY 250
Query: 161 --LI-------------QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI LL+R++ HI P T TFN ++ LC G++ KAL L +
Sbjct: 251 NILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKL 310
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G P+ ++++LI +
Sbjct: 311 IGLCPTLVTYNILISGFSK 329
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 92/207 (44%), Gaps = 35/207 (16%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV----------- 101
L++ +D F + G + S FN+ L L D FF+ +L
Sbjct: 54 LEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQFDVYSFGIT 113
Query: 102 -------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
G V + +E+L ++ G+ P+V+ YT +++ C+ G ++A + + + G+
Sbjct: 114 IKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGL 173
Query: 155 TQN--VVTLI--------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALL 197
N + T++ +L Q++++ G +P T+N++I C GK+ A
Sbjct: 174 AANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFK 233
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ + + G + ++++LI L ++
Sbjct: 234 VFDEISKRGVACNAVTYNILIGGLCRK 260
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A L +K GL P + TY ++ GF KVG S+ EL+ E +RG++ + VT
Sbjct: 296 GQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTY 355
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TI N +++ I KA + LM G +P + ++ +LI L
Sbjct: 356 --------------TILMNTFVRS----DDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGL 397
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E+AYEM +K GL PD +TY ++ G C G EA +L +
Sbjct: 368 IEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMV------------- 414
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
EM P + +N +I C +KAL L M ++G P+ S+
Sbjct: 415 -----EMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASY 460
>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
Length = 482
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 33/180 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K + E I +F +K G S S +N L+ L + +G ++
Sbjct: 112 CKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVER-------------LGEAQQF 158
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQ---NVV--T 160
YE L++ G TY ++DGFCK R EA+ELLNE + RG VT N + T
Sbjct: 159 YERLLS---SGAGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDT 215
Query: 161 LIQ---------LLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L + R+E G P+ +TF +I LC ++ +A + F E G PS
Sbjct: 216 LFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPS 275
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 71/191 (37%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K + E FN ++KDG F L+ L N RV A
Sbjct: 217 FKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKAN----------------RVARA 260
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
E+ + G P V + +MDGFCK G +EA + RG T N V+ L+
Sbjct: 261 KEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILING 320
Query: 166 ----QRLEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+RL P +T++ + LC ++ +A +L ++ + G P
Sbjct: 321 LCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPD 380
Query: 211 RTSHDMLIKKL 221
+ LI L
Sbjct: 381 VVMYTALISGL 391
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ +A E+ V KPDV TY+ MDG C+ R ++A ++L +++G T +VV
Sbjct: 326 RLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMYT 385
Query: 163 QL------LQRLE------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L L RL+ G P T N ++ G++ +A L E
Sbjct: 386 ALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVNGFGLAGRLDEARELFQRFVE 445
Query: 205 HGKIP-SRTSHDM 216
G P RT M
Sbjct: 446 RGVQPDCRTFSAM 458
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GRV+EA +ML + G++P VYTYT + C + EA+EL+ +RG NV T
Sbjct: 324 GRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTY 383
Query: 161 --LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R L+ G +P T+T+N +I LC G+ AL + M
Sbjct: 384 TALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEG 443
Query: 205 HGKIPSRTSHDMLIKKL 221
HG + + +++ +IK L
Sbjct: 444 HGSLANTQTYNEIIKGL 460
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R EA ++ + GL P+V TYT ++DG C+ GR+ A ++ ++ +R N+ T
Sbjct: 605 RFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYS 664
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L EM G P +TF ++I +G+I A LLL M +
Sbjct: 665 SLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDV 724
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P+ ++ +L+K L ++
Sbjct: 725 GCKPNYRTYSVLLKGLQKE 743
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 17/132 (12%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI---- 162
A+ + + +G P+ TY+ +++G C GR +EA+++L E IE+G+ V T
Sbjct: 294 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPIT 353
Query: 163 ------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+L+ R+ + G P T+ +I L +GK+ A+ L M + G +P
Sbjct: 354 ALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVP 413
Query: 210 SRTSHDMLIKKL 221
+ +++ LI +L
Sbjct: 414 NTVTYNALINEL 425
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 36/201 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SN 97
+ IF+ ++ G+ + +N+++ L + + + A+ F +
Sbjct: 435 LKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 494
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+L G V A +L +K +G +PD +TY ++ GF K G+ A E +E G+ N
Sbjct: 495 YLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPN 554
Query: 158 VV---TLI-------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V TLI LL+R+ EMG P ++N VI L + +A +
Sbjct: 555 PVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICD 614
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M E G +P+ ++ LI L
Sbjct: 615 KMAEQGLLPNVITYTTLIDGL 635
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+ A +L ++ G P+V +Y A+++G K R +EA ++ ++ E+G+ NV+T
Sbjct: 569 GKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITY 628
Query: 162 IQLLQRL----------EMGH-------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++ H +P T++++I LC GK +A +LL M
Sbjct: 629 TTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMER 688
Query: 205 HGKIPSRTSHDMLI 218
G P + LI
Sbjct: 689 KGLAPDEVTFTSLI 702
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++E A + + +GL P+ TY A+++ C GR + A+++ + G N T
Sbjct: 393 LGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQT 452
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ + L+MG +P +T+N +I G ++ A LL LM
Sbjct: 453 YNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMK 512
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
E+G P +++ L+ +
Sbjct: 513 ENGCEPDEWTYNELVSGFSK 532
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 48/225 (21%)
Query: 33 KENPRSLQAQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLNE 87
KEN R +A++ DK+ L + + ++ + T ++ F+D+ + N
Sbjct: 602 KEN-RFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNL 660
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
T G+ +EA +L ++ GL PD T+T+++DGF +GR + A LL
Sbjct: 661 Y-TYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLR 719
Query: 148 EAIERGVTQNVVTLIQLLQRL--------------------------------------- 168
++ G N T LL+ L
Sbjct: 720 RMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLAR 779
Query: 169 --EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
E+G P T++ ++ LC G+ ++A L+ M E G P R
Sbjct: 780 MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDR 824
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
Q AV FS H E +L + G +P + TY+ ++ G C+ GR EA +L+
Sbjct: 754 QHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVK 813
Query: 148 EAIERGVTQN----VVTLIQLLQRLEMGHIPRTI-------------TFNNVIQALCGVG 190
+ ERG + LI + LE+ H + + +I ALC G
Sbjct: 814 DMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAG 873
Query: 191 KIHKALLLLFLMYE 204
++ +A L M E
Sbjct: 874 QVEEAQALFDNMLE 887
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 24/157 (15%)
Query: 27 AESL--DLKENP----RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLM 80
AE L D+KE R + + K + + IF+SI+ G +S + L+
Sbjct: 808 AEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALIC 867
Query: 81 ALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN 140
AL G+VEEA + N+ D +T ++DG K G +
Sbjct: 868 ALCK----------------AGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELD 911
Query: 141 EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
M+LL+ + T N+ T + +L R E+ I ++I
Sbjct: 912 LCMKLLHIMESKNFTPNIQTYV-ILGR-ELSRIGKSI 946
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
I N +G + DF L+A L +Q T + G+++ A +L ++
Sbjct: 131 IINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSS 190
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----------------LI 162
++P++ Y+A++DG CK G ++A+ L ++ ERG+ + VT +
Sbjct: 191 VQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVT 250
Query: 163 QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
QLL ++ ++ P TFN +I ALC G+I +A +L +M + G+ P +++ L++
Sbjct: 251 QLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALME 308
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
GR+ EA +L + G KPD+ TY A+M+G+C +EA EL N ++RG+ +V+
Sbjct: 279 GRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNY 338
Query: 160 -TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI + +M +P ++N++I LC G+I LL M+
Sbjct: 339 NVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHG 398
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+ P ++++LI L ++
Sbjct: 399 SAQPPDVVTYNILIDALCKE 418
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA +L+ + G+KP++ TY A+MDG+C N A ++ N ++ G+ +++
Sbjct: 419 GRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNY 478
Query: 162 IQLLQRL--------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EM H IP ++N++I LC +G+I LL M +
Sbjct: 479 NVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCD 538
Query: 205 HGKIPSRTSHDMLI 218
G+ P ++++L+
Sbjct: 539 SGQSPDVITYNILL 552
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 35/202 (17%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLM--- 100
DIFN + K G + ++N L+ D A+ F N L+
Sbjct: 461 DIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGL 520
Query: 101 --VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE------- 151
+GR+ E+L + + G PDV TY ++D FCK ++A+ L + +E
Sbjct: 521 CNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFY 580
Query: 152 --RGVTQNVVTLIQL------LQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ N+ +L L+ L M G P T+ +I ALC G +A+LLL M
Sbjct: 581 TNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKM 640
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
++ + P + +++I L Q+
Sbjct: 641 EDNDRPPDAITFEIIIGVLLQR 662
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALV---MLNEQDTAVKFFSNHLMV-------- 101
+ E ++FN + K G V ++N L+ M++E K N +V
Sbjct: 316 VHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNS 375
Query: 102 --------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
GR+ ++L + PDV TY ++D CK GR EA+ +L +++G
Sbjct: 376 LIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKG 435
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
V N+VT ++ + ++ G P + +N +I C + +A+
Sbjct: 436 VKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAI 495
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
+L M IP S++ LI L
Sbjct: 496 VLFKEMRHKNLIPDIASYNSLIDGL 520
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 34/151 (22%)
Query: 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132
S F+ LL A+V + TA+ F+ +++ G+ P + T+T +++
Sbjct: 56 SVFDKLLGAIVRMGHYPTAISLFTQ----------------LQSKGISPSIATFTILINC 99
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKI 192
+ + A LL L+ G+ P +TFN +I C G I
Sbjct: 100 YFHQSHTAFAFSLLATI------------------LKSGYQPNLVTFNTIINGFCINGMI 141
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
KAL + G + + ++ LI L +
Sbjct: 142 FKALDFCQNLLAQGYLFDQFTYGTLINGLSK 172
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 97/210 (46%), Gaps = 31/210 (14%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA--------- 91
A +D+++ L+ + I+NS+ + ++ A+ ++ E + A
Sbjct: 487 ANELLDEMRKKGLQLNVCIYNSMVN-----GICKAGNIEQAIKLMKEMEVAGIDPDAITY 541
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+ +G +++A+++L + + GL+P V T+ +M+GFC +G + LL +E
Sbjct: 542 TTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLE 601
Query: 152 RGVTQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHK 194
+G+ + +T L+++ G P + T+N +I+ C + +
Sbjct: 602 KGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKE 661
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M E G +P+ TS++ LIK+ ++
Sbjct: 662 AWFLYKEMIEKGYVPTVTSYNALIKRFYKK 691
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 34/152 (22%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G +W+ + +N ++ +L L G+V+EA+ +LM + PDV +Y
Sbjct: 253 GISWNTTSYNIIIYSLCRL----------------GKVKEAHRLLMQMDFRSSTPDVVSY 296
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186
+ ++DG+C +G +A++L+++ +G+ P T+N++I L
Sbjct: 297 STVIDGYCHLGELKKALKLMDDMQIKGLK------------------PNRYTYNSIILLL 338
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
C +GK +A +L M IP + LI
Sbjct: 339 CKIGKSFEAEKVLREMMSQKIIPDNVVYTTLI 370
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 52/169 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V E + + + GLKPD TYT ++D +CK G A L NE ++ G+T N+VT
Sbjct: 412 GKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTY 471
Query: 162 ---------------------------------------------------IQLLQRLEM 170
I+L++ +E+
Sbjct: 472 GALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEV 531
Query: 171 GHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
I P IT+ VI A C +G I KA LL M + G P+ + ++L+
Sbjct: 532 AGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G+ EA ++L + + + PD YT ++ GF K+G A + +E + + ++ + +T
Sbjct: 341 IGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYIT 400
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+Q EM G P +T+ +I C G++ A L M
Sbjct: 401 YTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV 460
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ G P+ ++ LI L
Sbjct: 461 QMGMTPNIVTYGALIDGL 478
>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
Length = 455
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
FFS + G +++A ++ ++ GL PD +Y A++D CK+GR ++A N+ I G
Sbjct: 36 FFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEG 95
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
VT N+V L+ + L +G P + FN ++ LC G++ +
Sbjct: 96 VTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQ 155
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
L+ + G P S++ LI
Sbjct: 156 RLVDSIECMGVRPDVISYNTLI 177
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 31/138 (22%)
Query: 31 DLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90
+L + R ++ QR VD I+ ++ + +N++ DG
Sbjct: 144 NLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLI-DG----------------------- 179
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
H + G ++EA ++L + + GLKP+ ++Y ++ G+CK GR + A L + +
Sbjct: 180 -------HCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKML 232
Query: 151 ERGVTQNVVTLIQLLQRL 168
G+T VVT +L L
Sbjct: 233 SNGITPGVVTYNTILHGL 250
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 33/192 (17%)
Query: 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
F K + + +DIFN +++ G + + L+ AL L GR
Sbjct: 37 FSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKL----------------GR 80
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A + N+G+ P++ +++++ G C + + + EL E + G+ N+V
Sbjct: 81 VDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNT 140
Query: 164 LL------------QRLE-----MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L QRL MG P I++N +I C G I +A LL M G
Sbjct: 141 ILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVG 200
Query: 207 KIPSRTSHDMLI 218
P+ S++ L+
Sbjct: 201 LKPNSFSYNTLL 212
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 34/222 (15%)
Query: 17 VDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFN 76
+D S+ S+ LK N S KA + +F + +G V +N
Sbjct: 186 IDEASKLLEGMVSVGLKPNSFSYNTL-LHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYN 244
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
+L L R EA E+ +N+ N G K +YTY I++G CK
Sbjct: 245 TILHGL----------------FQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKS 288
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH-----------------IPRTITF 179
+EA ++ +G+ N++T ++ L G +P +T+
Sbjct: 289 NCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTY 348
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
V + L G + + L M ++G P+ + L+++L
Sbjct: 349 RVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 390
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 37/183 (20%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----------------- 102
FN + +G ++ F+ L+ L +++ + + F L VG
Sbjct: 88 FNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCK 147
Query: 103 --RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
RV E ++ +++ G++PDV +Y ++DG C G +EA +LL + G+
Sbjct: 148 EGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLK----- 202
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P + ++N ++ C G+I A L M +G P +++ ++
Sbjct: 203 -------------PNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHG 249
Query: 221 LDQ 223
L Q
Sbjct: 250 LFQ 252
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +++ K+G D D+++ + + T H + ++EA ++ + G
Sbjct: 290 LVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKG 349
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
P+V +Y+ +++G+CK+ R ++AM L E +R + +P +T
Sbjct: 350 CAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQREL------------------VPNIVT 391
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +I LC VG++ A+ L M G+IP ++ +L+ L
Sbjct: 392 YNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYL 434
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA + + +G +P+ TY ++ G CKVG S A+ LL +++ NV+T
Sbjct: 158 GKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITY 217
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALC 187
++ L EM G P T+N++I LC
Sbjct: 218 NTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLC 260
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV+ + +L + G +PD T+T ++ G C G+ EA+ L ++ + G
Sbjct: 124 RVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQ------- 176
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ +I LC VG A+ LL M + P+ +++ +I L
Sbjct: 177 -----------PNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCL 224
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG A +L ++ +P+V TY I+D K + NEA+ + +E I +G++ NV T
Sbjct: 192 VGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVST 251
Query: 161 LIQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L E H+ P + F ++ ALC G + A ++ +M
Sbjct: 252 YNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMI 311
Query: 204 EHGKIPSRTSHDMLI 218
+ G P ++ L+
Sbjct: 312 QRGVEPDVVTYTALM 326
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 16/84 (19%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA----------- 149
VG +E A ++ ++ + GL PDV+TYT +++G C G EA +L E
Sbjct: 472 VGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCT 531
Query: 150 ---IERGVTQNVVTL--IQLLQRL 168
I RG +N TL IQLLQ +
Sbjct: 532 YNLITRGFLRNNETLSAIQLLQEM 555
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++A ML ++ L PD+ +Y ++DG C+VG A +L + +G+
Sbjct: 439 HLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLH------- 491
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P T+ +I LC G + +A L M G P +++++ +
Sbjct: 492 -----------PDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITR 537
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 37/193 (19%)
Query: 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------------- 96
S + E +F+++ + G +V ++ L+ + D A+ F
Sbjct: 333 SEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTY 392
Query: 97 NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L+ VGR+ +A + + G PD+ TY ++D CK ++AM +L +AIE
Sbjct: 393 NTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAML-KAIE 451
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
N+ IQ ++N VI +C VG++ A L + G P
Sbjct: 452 ---GSNLAPDIQ--------------SYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDV 494
Query: 212 TSHDMLIKKLDQQ 224
++ ++I L Q
Sbjct: 495 WTYTIMINGLCLQ 507
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA ++ + DG PD TY I GF + + A++LL E + RG + + T+
Sbjct: 508 GLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTI 567
Query: 162 IQLLQRL 168
+++ L
Sbjct: 568 TLIVEML 574
>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ G++ EA++ + +K + DV TYT ++ GF G A ++ + +++GV +
Sbjct: 250 YFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPS 309
Query: 158 VVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V T +Q L EM G++P +IT+N VI+ LC G++ +A+ +
Sbjct: 310 VATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMG 369
Query: 201 LMYEHGKIPSRTSHDMLIK 219
M + G P+ +++++I+
Sbjct: 370 RMKDDGCEPNVQTYNLVIR 388
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 42/257 (16%)
Query: 4 SAANSPTPFSVLLVDSPS-RS-PSAAESLDLKENPRSLQ--AQRFVDKIKASPLKERIDI 59
S+ + S L DSPS RS S L P++ A+R+ A + +
Sbjct: 102 SSYDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYAS---AGKPHRAVKV 158
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------------SNHLMV 101
F S+ + G + FN +L L + A F + ++
Sbjct: 159 FLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLI 218
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
R +A EML + GL P++ +Y ++ G+ + G+ NEA + E +R +V+T
Sbjct: 219 KRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITY 278
Query: 162 IQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ ++ G +P T+N IQ LC + A+++ M
Sbjct: 279 TTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVV 338
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ +++++I+ L
Sbjct: 339 KGYVPNSITYNLVIRGL 355
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV----- 104
A +K +F+++ K G SV+ +N + L + D A+ F ++ G V
Sbjct: 288 AGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSIT 347
Query: 105 --------------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
E A E + +K+DG +P+V TY ++ FC G ++A++L +
Sbjct: 348 YNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMT 407
Query: 151 ERGVTQNVVT---LIQ-----------------LLQRLEMGHIPRTITFNNVIQALCGVG 190
N+ T LI L++ ++ G +PR TFN V+ L G
Sbjct: 408 SGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFTFNRVLNGLLLTG 467
Query: 191 KIHKALLLLFLMYEHGKIPSR 211
A +L L G++ +
Sbjct: 468 NQGFAKEILRLQSRCGRLTRK 488
>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
Length = 859
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ +G+V EA + + + + LKPD Y+Y ++DG+C+ G+ ++A L E + G+T
Sbjct: 376 GYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGIT- 434
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
P +T+N VI+ L VG AL L LM E G P+ S
Sbjct: 435 -----------------PTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEIS 474
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V +A+ + + DG+ P V TY ++ G VG ++A+ L + +ERGVT N ++
Sbjct: 416 GKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISC 475
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L + L G T+ FN +I LC +GK+ +A + M E
Sbjct: 476 CTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKE 535
Query: 205 HGKIPSRTSHDML 217
G P ++ L
Sbjct: 536 LGLSPDEITYRTL 548
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA +L + + G PD +TY ++ G +EA +L +E +E+G+
Sbjct: 731 GKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGL------- 783
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IP +N +I LC +G I +A L + +Y+ G +P+ ++++LI
Sbjct: 784 -----------IPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPNAVTYNILI 829
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 24/173 (13%)
Query: 73 SDFNDLLMALVMLNEQD------TAVKFFSNHLMVGRVEEAYEMLMNVKNDGL-KPDVYT 125
DF + L +++E+ T + G+++EA ++L V+ D L D
Sbjct: 275 GDFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERV 334
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------QRLEMGHI 173
Y ++DG+C++GR +A+ + +E + G+ N+V L+ +R+ +G +
Sbjct: 335 YGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMV 394
Query: 174 -----PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P ++N ++ C GK+ KA +L M G P+ +++ +IK L
Sbjct: 395 DWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGL 447
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 25/182 (13%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERI--DIFNSIKKDGTNWS-----VSDFNDLLMALVM 84
L +N +L+AQ+ D + S + + +I +I DG S +LM+
Sbjct: 689 LVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGF 748
Query: 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
L + T + G V+EA+++ + GL P++ Y A+++G CK+G + A
Sbjct: 749 LPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQR 808
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L + ++G+ +P +T+N +I C +G + KA L M E
Sbjct: 809 LFYKLYQKGL------------------VPNAVTYNILIGCYCRIGDLDKASRLREKMTE 850
Query: 205 HG 206
G
Sbjct: 851 EG 852
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN-EAME-LLNEAIERGVT 155
H VGRV+ A E+L + +GL+P+V TY +++G+ VGR + E +E +L ERGV+
Sbjct: 236 HCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGY--VGRGDFEGVERVLRLMSERGVS 293
Query: 156 QNVVTLIQLLQ 166
+NVVT L++
Sbjct: 294 RNVVTCTMLMR 304
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 23/130 (17%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA---------------MEL 145
+G++ EA + +K GL PD TY + DG+CK G EA +E+
Sbjct: 520 MGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEM 579
Query: 146 LNEAIE-----RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
N I+ R + L+++ R G P +T+ +I C K+ KA L F
Sbjct: 580 YNSLIDGLFKIRKLNDVTDLLVEMQTR---GLSPNVVTYGTLISGWCDEQKLDKAFHLYF 636
Query: 201 LMYEHGKIPS 210
M E G P+
Sbjct: 637 EMIERGFTPN 646
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 66 DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYT 125
DG +V +N ++ LV + D A+ + HLMV R G+ P+ +
Sbjct: 431 DGITPTVVTYNTVIKGLVDVGSYDDALHLW--HLMVER--------------GVTPNEIS 474
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRL-------------- 168
++D F K+G S+ AM L E + RG T++ V T+I L ++
Sbjct: 475 CCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMK 534
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
E+G P IT+ + C G + +A + +M S ++ LI L
Sbjct: 535 ELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGL 587
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 34/166 (20%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113
K + +F+ + + G + + LL LV E AV F
Sbjct: 173 KHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQ---------------- 216
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
+ G+ PDVY + +++ C+VGR + AME+L + ++ G+ NVV
Sbjct: 217 IVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVV-------------- 262
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T+N ++ G G +L LM E G + + ML++
Sbjct: 263 ----TYNGLVNGYVGRGDFEGVERVLRLMSERGVSRNVVTCTMLMR 304
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ ++ + ++L+ ++ GL P+V TY ++ G+C + ++A L E IERG T NVV
Sbjct: 590 IRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVV 649
Query: 161 LIQLLQRL 168
+++ L
Sbjct: 650 CSKIVSSL 657
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A M ++ + G KPD++T+ +++ G CKV + EA+ L + + GV N +T
Sbjct: 492 KVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYN 551
Query: 163 QL----LQRLEM-------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L L+R M G IT+N +I+ALC G I K L L M
Sbjct: 552 TLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSK 611
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ S ++LI L
Sbjct: 612 GLNPNNISCNILINGL 627
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 22/147 (14%)
Query: 94 FFSNHLMVGRVEEAY-----EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F N L++G ++ Y E++ ++ G +P+V TYT ++D FCK GR EA +L+E
Sbjct: 408 FTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDE 467
Query: 149 AIERGVTQNVV---TLIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGK 191
+G+ N V LI L + E G P TFN++I LC V K
Sbjct: 468 MSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 527
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+AL L M G I + +++ LI
Sbjct: 528 FEEALGLYQDMLLEGVIANTITYNTLI 554
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 40/216 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-------- 100
K + +E + ++ + +G + +N L+ A + A+K ++ L
Sbjct: 524 KVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDI 583
Query: 101 -----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G +E+ + ++ + GL P+ + +++G C+ G A+E L +
Sbjct: 584 TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM 643
Query: 150 IERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
I RG+T ++VT + L +L++ G P IT+N +I C G
Sbjct: 644 IHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMF 703
Query: 193 HKALLLLFLMYEHGKIPSRTSHDML----IKKLDQQ 224
A LLL + G IP+ + +L IK+ DQ+
Sbjct: 704 DDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQL 164
YEML + G+ P VYT+ +M C V + A LL + G N + TLI
Sbjct: 224 YEML----SKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHA 279
Query: 165 LQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L ++ MG IP TFN+ I LC + +IH+A L+ M G P+
Sbjct: 280 LSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPN 339
Query: 211 RTSHDMLIKKL 221
++ +L+ L
Sbjct: 340 SFTYGVLMHGL 350
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 37/161 (22%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-----------------HLM 100
++F + G + +V F ++ AL ++NE D+A + H +
Sbjct: 221 NVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHAL 280
Query: 101 --VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
VGRV E ++L + G PDV T+ + G CK+ R +EA +L++ + RG T
Sbjct: 281 SKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFT--- 337
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
P + T+ ++ LC +GK+ +A +LL
Sbjct: 338 ---------------PNSFTYGVLMHGLCRMGKVDEARMLL 363
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 24/141 (17%)
Query: 102 GRVEEA----YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
GR++EA +E +++V G PD++TY ++ G CK G A EL+NE +G N
Sbjct: 385 GRLDEAKAVMHESMLSV---GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPN 441
Query: 158 VVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V+T L+ R EM G + +N +I ALC K+ AL +
Sbjct: 442 VITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFG 501
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G P + + LI L
Sbjct: 502 DMSSKGCKPDIFTFNSLIFGL 522
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA------------- 149
R+ EA +++ + G P+ +TY +M G C++G+ +EA LLN+
Sbjct: 320 RIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLIN 379
Query: 150 --IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ RG ++ L +G P T+N +I LC G + A L+ M G
Sbjct: 380 GYVSRGRLDEAKAVMH-ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGC 438
Query: 208 IPSRTSHDMLIKKLDQQ 224
P+ ++ +LI + ++
Sbjct: 439 EPNVITYTILIDRFCKE 455
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------- 154
G + +LM +K +G+ + IM + + G +A LL + RGV
Sbjct: 143 GEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDM--RGVYSCEPTF 200
Query: 155 -TQNVVTLIQL------------LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
+ NVV + L + L G P TF V++ALC V ++ A LL
Sbjct: 201 RSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKD 260
Query: 202 MYEHGKIPSRTSHDMLIKKLDQ 223
M HG +P+ + LI L +
Sbjct: 261 MTRHGCVPNAIVYQTLIHALSK 282
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 89/206 (43%), Gaps = 35/206 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
++A E + FN ++ G + F+ ++ +L + A FF +
Sbjct: 224 VRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFEPDVV 283
Query: 98 --------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G + +A E+ ++K G+KP+VYTY+ ++D C+ G+ A ++ +E
Sbjct: 284 VYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEM 343
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
I+ G N VT L+ Q +G TI++N +I++ C +
Sbjct: 344 IDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENL 403
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+A +L LM + G P+ ++ + +
Sbjct: 404 EEAAKILNLMVKKGVAPNASTFNFIF 429
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 77/184 (41%), Gaps = 19/184 (10%)
Query: 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111
P E +D+ +++ W V D + ++ V+ ++ G EA
Sbjct: 180 PYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVR---RYVRAGLAAEAVHAF 236
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--TLI------- 162
+++ G PD+ ++ ++ CK R+NEA + R VV +L+
Sbjct: 237 NRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAG 296
Query: 163 ------QLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
++ ++M I P T++ VI +LC G+I +A + M + G P+ + +
Sbjct: 297 DISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFN 356
Query: 216 MLIK 219
L++
Sbjct: 357 SLMR 360
>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 418
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++ +F++I K SV FN L+ + ++ +G ++E
Sbjct: 147 VKEGEIRLAQSVFDAITKWSLRPSVVSFNTLM----------------NGYIKLGDLDEG 190
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + ++ G++PDVYTY+ +++G CK + ++A EL +E ++ G+ N VT L+
Sbjct: 191 FRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q L IT+N +I LC G + +A L+ M G P
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 211 RTSHDMLI 218
+ ++ LI
Sbjct: 311 KITYTTLI 318
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G A E I+ + + V
Sbjct: 290 GDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAY 349
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + LL M
Sbjct: 350 TALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
Query: 205 HGKIPS 210
G +PS
Sbjct: 410 DGYMPS 415
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +A +ML + + GLKP++ TYT I++ FCK G +LL E G +VVT
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418
>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
Length = 695
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 19/162 (11%)
Query: 59 IFNSIKKDGTNWSVSD-FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117
+FN +++ G S ++D+ V + + ++ M G EA +++ +
Sbjct: 225 LFNKLQRAGKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGK 284
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
+ PD Y Y+ +++G CK R EA E+ E RG++ P +
Sbjct: 285 KIAPDFYAYSILINGLCKARRPGEAKEMFQEMRGRGIS------------------PTVV 326
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T+N +++ L K+ A+ L + M + G++P S++++I+
Sbjct: 327 TYNTLLEGLLSTAKLQDAMELTYFMLDQGRLPDTCSYNLMIR 368
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 37/195 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA E ++F ++ G + +V +N LL L L ++++A
Sbjct: 301 CKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGL----------------LSTAKLQDA 344
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN-------VVT 160
E+ + + G PD +Y ++ GFC G +NEA L + I+ G+ N +V
Sbjct: 345 MELTYFMLDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVG 404
Query: 161 LIQ---------LLQRLEMGH-----IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
I+ L +R++ G P T+ +I +LC ++ +A LL M + G
Sbjct: 405 FIKDEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKG 464
Query: 207 KIPSRTSHDMLIKKL 221
+PS ++L+ +L
Sbjct: 465 FVPSLKIWEVLLSRL 479
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E+A L ++ G P + Y++I+ FCK G ++AM++ E +G ++V
Sbjct: 60 IEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNV 119
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LL L G P +T+N +I LC K+ +A+ LL M +
Sbjct: 120 LLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQED 179
Query: 207 KIPSRTSHDMLIKKL 221
P+ ++ LI L
Sbjct: 180 VSPTFVTYTTLIDHL 194
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 34/176 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K + + +D+F + G + +FN LL L ++ EA
Sbjct: 90 CKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGL----------------WRARKIHEA 133
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
E+ ++ + G KPDV TY ++ G CK + +EA+ LL + V+
Sbjct: 134 RELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVS------------ 181
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P +T+ +I LC ++ +A + M E + ++ +L KL +
Sbjct: 182 ------PTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQR 231
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
P+V +Y I+DG+CK +A+ L E E+GH P ++
Sbjct: 42 PNVVSYNIIIDGYCKARNIEKALAFLREM------------------EELGHPPTPHAYS 83
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+++Q+ C G + KA+ + M G P + ++L+ L
Sbjct: 84 SIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGL 124
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 19/140 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VEEA+++L +++ G P + + ++ + GR ++A EL E + R Q +V
Sbjct: 449 QVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKE-MSRINCQQLVGSS 507
Query: 163 QLL------------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L Q + G +P T++ ++ LC GK +A L+ +
Sbjct: 508 NILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVR 567
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
GK P L+ L Q
Sbjct: 568 DGKRPENQGLRQLLGALCAQ 587
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA + L + + G+ PD +TY ++ G C G++++A +L+ E + G L
Sbjct: 518 GSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKRPENQGL 577
Query: 162 IQLLQRL 168
QLL L
Sbjct: 578 RQLLGAL 584
>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 624
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 36/209 (17%)
Query: 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------ 98
L E D+ + + K G FN ++ A N+ D A+ FSN
Sbjct: 361 GALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNY 420
Query: 99 -------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
GRV++A ++K++GL P++ +T ++ G C + ++ EL E I+
Sbjct: 421 GTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMID 480
Query: 152 RGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHK 194
RG+ + + ++ L +G P T T+N +I C GK+ +
Sbjct: 481 RGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDE 540
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL +M +G PS +++ +I Q
Sbjct: 541 AMKLLGVMVFNGVKPSDVTYNTIINGYSQ 569
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 37/193 (19%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF--------------F 95
A + + + FNS+K +G ++ F L+ L ++ D + F
Sbjct: 430 AGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIF 489
Query: 96 SNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
N +M GRV EA + + G++P+ TY ++DG+C G+ +EAM+LL +
Sbjct: 490 FNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMV 549
Query: 151 ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
GV P +T+N +I G+I L LL M G P
Sbjct: 550 FNGVK------------------PSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPG 591
Query: 211 RTSHDMLIKKLDQ 223
+++ML++ L Q
Sbjct: 592 IVTYEMLLQGLFQ 604
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 21/208 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNE 87
L +N +S +A++ D + K + ++ +G + D DL+M M
Sbjct: 322 LCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLG 381
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+ +V+EA + N++ GL PD+ Y ++D C GR ++A+ N
Sbjct: 382 HHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFN 441
Query: 148 EAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVG 190
G+ N+V L+ L + G TI FN ++ LC G
Sbjct: 442 SLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKG 501
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ +A L LM G P+ +++ LI
Sbjct: 502 RVIEAKNLFDLMVRIGIEPNTNTYNTLI 529
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 44/202 (21%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
++ L + +F+++ G + V ++ ++ AL D A + F+
Sbjct: 218 LREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDC 277
Query: 97 --------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ G+ +EA + + G++PDV TYTA+MD CK G+S EA ++ +
Sbjct: 278 IMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDS 337
Query: 149 AIERGVTQNVVTLIQLL---------------------QRLEMGHIPRTITFNNVIQALC 187
++RG + T LL + +++GH FN ++ A
Sbjct: 338 LVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGH----HIFNMIMGAYA 393
Query: 188 GVGKIHKALLLLFLMYEHGKIP 209
K+ +ALL+ M + G P
Sbjct: 394 KHNKVDEALLVFSNMRQQGLNP 415
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM----------- 170
DV YT +++G + G+ ++A L + ++RG + +VVT ++ L
Sbjct: 206 DVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVF 265
Query: 171 ------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P I + +++ C GK +A+ + M HG P ++ L+ L
Sbjct: 266 TRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYL 322
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 19/111 (17%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLN-EAIERG-VTQNVV---TLIQLLQR----- 167
G KPD+++YT ++ G C S +A++LL+ A +G +VV T+I L R
Sbjct: 165 GCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLD 224
Query: 168 ---------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
L+ G P +T++++I AL + KA + M ++G +P
Sbjct: 225 KAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMP 275
Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 20/111 (18%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR++ A+ + V GL+ ++ ++ G C R+++AM++
Sbjct: 112 LGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDI--------------- 156
Query: 161 LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH-GKIP 209
+L+R+ E+G P ++ +++ LC +AL LL +M +H G+ P
Sbjct: 157 ---VLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCP 204
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++ ++ + + GLKPDVY+Y+ ++G+CKV + +EAMEL +E RGV
Sbjct: 159 GKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGV------- 211
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P +T+N +I+ALC + A +L M G P ++ L+
Sbjct: 212 -----------VPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGF 260
Query: 222 DQQ 224
+Q
Sbjct: 261 CKQ 263
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 34/212 (16%)
Query: 30 LDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
LD P ++ R + + + + + +F ++ G ++V + L+ L+
Sbjct: 32 LDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHV 91
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
D F L G KPDV +T ++DG C++G++ A LL E
Sbjct: 92 DYGFSVFGKTL----------------KRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKE 135
Query: 149 AIERGVTQNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGK 191
G +VVT L++ + G P +++ I C V K
Sbjct: 136 MGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEK 195
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
I +A+ L M G +P+ +++ LIK L Q
Sbjct: 196 IDEAMELFDEMSHRGVVPNAVTYNTLIKALCQ 227
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 35/194 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM-LNEQDTAVKFFSNHLMVGRVEEA 107
K + E +++F+ + G + +N L+ AL L +D V F
Sbjct: 192 KVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLF------------- 238
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--TLI--- 162
+ GL PD+ Y+ ++DGFCK G +E + L E R V ++V T+I
Sbjct: 239 ----RKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIING 294
Query: 163 -----------QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
++L RL + G P T+ ++ LC G I +AL L M E G +P
Sbjct: 295 MCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPG 354
Query: 211 RTSHDMLIKKLDQQ 224
S+++L++ Q
Sbjct: 355 SCSYNVLLQGCLQH 368
>gi|359497557|ref|XP_003635566.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like, partial [Vitis vinifera]
Length = 253
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA +L + G KPD Y Y IM G+C + + +EA+ + + E GV ++VT
Sbjct: 36 LREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAIGVYKKMKEEGVEPDLVTYNT 95
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L EMGH P +T+ +++ LC G AL LL M G
Sbjct: 96 LIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGLCREGNALGALALLEEMEAKG 155
Query: 207 KIPSRTSHDMLIKKL 221
P+ +++ L+ L
Sbjct: 156 CSPNSCTYNTLLHGL 170
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E I ++ +K++G + +N L+ L GRV+EA + L +
Sbjct: 73 EAIGVYKKMKEEGVEPDLVTYNTLIFGLSK----------------SGRVKEARKFLDIM 116
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
G PD TYT++M+G C+ G + A+ LL E +G + P
Sbjct: 117 AEMGHFPDAVTYTSLMNGLCREGNALGALALLEEMEAKGCS------------------P 158
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ T+N ++ LC + + + + L +M G + S+ ++ L ++
Sbjct: 159 NSCTYNTLLHGLCKLRMLERGIELYGVMKSGGMKLEKASYATFVRALCKE 208
>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 536
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 18/139 (12%)
Query: 104 VEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++A EM +VK+ G PDV TYT+++ G+CK G+ EA LL++ + G+ VT
Sbjct: 257 LKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFN 316
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + + G P +TF ++I C VG++++ L M
Sbjct: 317 VLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNAR 376
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P+ ++ +LI L ++
Sbjct: 377 GMFPNAFTYSILINALCKE 395
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 36/162 (22%)
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLM-------------------VGRVEEAYEMLMNVKN 116
N LL LV L+ + A+K F HL VG+ E+A E+L +
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSG 234
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G PD+ TY ++ GFCK +A E+ ++ + G P
Sbjct: 235 FGCLPDIVTYNTLIKGFCKSNELKKANEMFDDV-----------------KSSSGCSPDV 277
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+T+ ++I C GK+ +A +LL M G P+ + ++L+
Sbjct: 278 VTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLV 319
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A E+ + + G PDV T+T+++DG+C+VG+ N+ L E RG+ N T
Sbjct: 326 GEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTY 385
Query: 162 IQLLQRLE-----------MGH------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L +G IP+ +N VI C GK+++A++++ M +
Sbjct: 386 SILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEK 445
Query: 205 HGKIPSRTSHDMLI 218
P + + +LI
Sbjct: 446 KKCKPDKITFTILI 459
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE-RGVTQNVVTLIQLL 165
A +M +K+DG+ P+ ++ F + G+ + A LL ++ E G V +L+ L
Sbjct: 122 AGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQSYEVEGCCMVVNSLLNTL 181
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ L T TFN +I+ LCGVGK KA+ LL M G +P
Sbjct: 182 VKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDI 241
Query: 212 TSHDMLIK 219
+++ LIK
Sbjct: 242 VTYNTLIK 249
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA ++ ++ KPD T+T ++ G C GR EA+ + ++ + G + + +T+
Sbjct: 431 GKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITV 490
Query: 162 IQLLQRL 168
LL L
Sbjct: 491 SSLLSCL 497
>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
Length = 601
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 19/144 (13%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F + GR+ +A ++ + GL+P+V TY +++ CK G EA+ L NE ++G
Sbjct: 226 FIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKG 285
Query: 154 VTQNVVTLIQLLQRLE--------MGHI-----------PRTITFNNVIQALCGVGKIHK 194
V +VVT L+ L MG + P +TFN+VI LC +G++ +
Sbjct: 286 VAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQ 345
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A+ + +M E G + + +++ LI
Sbjct: 346 AISVREMMAERGCMCNLVTYNYLI 369
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R +EA +L +++ G++ DV TY ++ G C + A+ELL E GV NV+
Sbjct: 130 RTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYS 189
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL+ +G P I F I LC G+I KA+ + +M +
Sbjct: 190 CLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQR 249
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P+ ++++LI L ++
Sbjct: 250 GLEPNVVTYNVLINCLCKE 268
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 45/204 (22%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
R L A R D E + + S++ G V + L+ L E D A++
Sbjct: 123 RGLCASRRTD--------EAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLG 174
Query: 97 -------------------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
+ GR ++ ++ + G++PDV +T +D CK G
Sbjct: 175 EMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKG 234
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
R +A+++ + ++RG+ NVV T+N +I LC G + +AL
Sbjct: 235 RIGKAVKVKDIMVQRGLEPNVV------------------TYNVLINCLCKEGSVREALA 276
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
L M + G P +++ LI L
Sbjct: 277 LRNEMDDKGVAPDVVTYNTLIAGL 300
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L V +V A ++ + + GL+PD +TY+ +++GF K+ + A L +RG
Sbjct: 368 LIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRG 427
Query: 154 VTQNVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGV---------------GKIHKALL 197
+ + I LL L ++G + + + N + CG+ G I A
Sbjct: 428 IRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNCGLDAVAYSTMMYGACKSGDIKAAKQ 487
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
LL M + G P ++ +LI
Sbjct: 488 LLQDMLDEGLAPDAVTYSILI 508
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 21/121 (17%)
Query: 102 GRVEEAYEMLMNVKNDG---LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
G + +A +L ++ + +P+ +YT +M G C R++EA+ LL GV +V
Sbjct: 91 GDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADV 150
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
V T+ +I+ LC ++ AL LL M G P+ + L+
Sbjct: 151 V------------------TYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLL 192
Query: 219 K 219
+
Sbjct: 193 R 193
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 26/130 (20%)
Query: 81 ALVMLNEQDT-----AVKFFS---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132
A+V+ NE D AV + + G ++ A ++L ++ ++GL PD TY+ +++
Sbjct: 451 AMVLFNEMDMNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILINM 510
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKI 192
F K+G EA ER + Q + G +P F+++I+ G+I
Sbjct: 511 FAKLGDLEEA--------ERVLKQMAAS----------GFVPDVAVFDSLIKGYSAEGQI 552
Query: 193 HKALLLLFLM 202
+K L L+ M
Sbjct: 553 NKILDLIHEM 562
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 75/191 (39%), Gaps = 42/191 (21%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-------- 100
K ++E + + N + G V +N L+ L + E D A+ +
Sbjct: 267 KEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPD 326
Query: 101 -------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+GR+ +A + + G ++ TY ++ GF +V + N AM L++
Sbjct: 327 VVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMS 386
Query: 148 EAIERGVTQNVVTLIQLLQ---------RLEMGHIPRTITFNNV----------IQALCG 188
E I G+ + T L+ R EM RT+T + + ALC
Sbjct: 387 ELISSGLEPDSFTYSILINGFSKLWEVDRAEM--FLRTMTQRGIRAELFHYIPLLAALCQ 444
Query: 189 VGKIHKALLLL 199
+G + +A++L
Sbjct: 445 LGMMEQAMVLF 455
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 34/194 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K +++ +D+F +K+ G + +V + +L+ L GRVEEA
Sbjct: 279 FKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGK----------------AGRVEEA 322
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y++ N+ DGL PDV +M+ KVGR E + NE T VV+ +++
Sbjct: 323 YDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKA 382
Query: 168 L------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
L G P T++ +I C ++ KALLLL M E G P
Sbjct: 383 LFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPP 442
Query: 210 SRTSHDMLIKKLDQ 223
++ LI L +
Sbjct: 443 CPAAYCSLINALGK 456
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 31 DLKENPRSLQAQRFVDKIK----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV--- 83
+LKEN ++ ++ + IK L E +D+FN +K G+ V +N L+ +V
Sbjct: 469 ELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAG 528
Query: 84 MLNEQDTAVK----------------FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
M+NE ++ ++ + G A EM +K+ G+KPD TY
Sbjct: 529 MVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYN 588
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
++ F G EA L+ E ++G + +T +L
Sbjct: 589 TLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSIL 626
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G++ EA ++ +KN G PDVY Y A+M G K G NEA LL + E G T ++ +
Sbjct: 492 CGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINS 551
Query: 161 ----------------LIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
I++ + ++ G P +T+N ++ G +A L+ M
Sbjct: 552 HNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMK 611
Query: 204 EHG 206
+ G
Sbjct: 612 DKG 614
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 102 GRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+ E+ +E+ + N+G PD TY+A++ + K+GR++ A+ L +E + N +
Sbjct: 211 GQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDE-----MKDNCMQ 265
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P + ++ VGK+ KAL L M G P+ ++ LIK
Sbjct: 266 -------------PTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKG 312
Query: 221 LDQ 223
L +
Sbjct: 313 LGK 315
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GRV+EA +ML + G++P VYTYT + C + EA+EL+ +RG NV T
Sbjct: 282 GRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTY 341
Query: 161 --LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R L+ G +P T+T+N +I LC G+ AL + M
Sbjct: 342 TALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEG 401
Query: 205 HGKIPSRTSHDMLIKKL 221
HG + + +++ +IK L
Sbjct: 402 HGSLANTQTYNEIIKGL 418
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 17/132 (12%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI---- 162
A+ + + +G P+ TY+ +++G C GR +EA+++L E IE+G+ V T
Sbjct: 252 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPIT 311
Query: 163 ------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+L+ R+ + G P T+ +I L +GK+ A+ L M + G +P
Sbjct: 312 ALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVP 371
Query: 210 SRTSHDMLIKKL 221
+ +++ LI +L
Sbjct: 372 NTVTYNALINEL 383
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R EA ++ + GL P+V TYT ++DG C+ GR+ A ++ ++ +R N+ T
Sbjct: 563 RFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYS 622
Query: 163 QLLQRL-------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
L+ L E+G P T++ ++ LC G+ ++A L+ M E G P
Sbjct: 623 SLIYGLCQEGKADEAERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCP 682
Query: 210 SR 211
R
Sbjct: 683 DR 684
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 86/201 (42%), Gaps = 36/201 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SN 97
+ IF+ ++ G+ + +N+++ L + + + A+ F +
Sbjct: 393 LKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 452
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+L G V A +L +K +G +PD +TY ++ GF K G+ A E +E G+ N
Sbjct: 453 YLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPN 512
Query: 158 VVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V+ + LL+R+ EMG P ++N VI L + +A +
Sbjct: 513 PVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICD 572
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M E G +P+ ++ LI L
Sbjct: 573 KMVEQGLLPNVITYTTLIDGL 593
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++E A + + +GL P+ TY A+++ C GR + A+++ + G N T
Sbjct: 351 LGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQT 410
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ + L+MG +P +T+N +I G ++ A LL LM
Sbjct: 411 YNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMK 470
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
E+G P +++ L+ +
Sbjct: 471 ENGCEPDEWTYNELVSGFSK 490
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++E A + GL P+ +YTA++DG K G+ + A+ LL E G NV +
Sbjct: 492 GKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESY 551
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L E G +P IT+ +I LC G+ A + M +
Sbjct: 552 NAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEK 611
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+P+ ++ LI L Q+
Sbjct: 612 RKCLPNLYTYSSLIYGLCQE 631
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 21/140 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+ A +L ++ G P+V +Y A+++G K R +EA ++ ++ +E+G+ NV+T
Sbjct: 527 GKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITY 586
Query: 162 IQLLQRL----------EMGH-------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++ H +P T++++I LC GK +A M E
Sbjct: 587 TTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAE----RMSE 642
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ ++ L+ L ++
Sbjct: 643 IGCEPTLDTYSTLVSGLCRK 662
Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---- 157
G+ +EA M G +P + TY+ ++ G C+ GR EA +L+ + ERG +
Sbjct: 632 GKADEAERM----SEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIY 687
Query: 158 VVTLIQLLQRLEMGHIPRTI-------------TFNNVIQALCGVGKIHKALLLLFLMYE 204
LI + LE+ H + + +I ALC G++ +A L M E
Sbjct: 688 YSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLE 747
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 24/157 (15%)
Query: 27 AESL--DLKENP----RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLM 80
AE L D+KE R + + K + + IF+SI+ G +S + L+
Sbjct: 668 AEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALIC 727
Query: 81 ALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN 140
AL G+VEEA + N+ D +T ++DG K G +
Sbjct: 728 ALCK----------------AGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELD 771
Query: 141 EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
M+LL+ + T N+ T + +L R E+ I ++I
Sbjct: 772 LCMKLLHIMESKNFTPNIQTYV-ILGR-ELSRIGKSI 806
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A +++ + DG PD++TY +++G CK+G ++A ++N+AI +G +V T
Sbjct: 303 GLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTF 362
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+QL++R+ M G P IT+N+V+ LC GK + M
Sbjct: 363 NTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMIL 422
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ ++++LI+
Sbjct: 423 KGCRPNAITYNILIENF 439
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 22/147 (14%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N LM G +V+EA + L + N G PD +TY I+DG+CK EA ELL +AI
Sbjct: 188 NTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIF 247
Query: 152 RGVTQNVVTLIQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGKIHK 194
+G + VT L+ L G + R + +N++++ LC G I
Sbjct: 248 KGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILH 307
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
AL ++ M E G P +++++I L
Sbjct: 308 ALQVMNEMVEDGCHPDIWTYNIVINGL 334
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQ 156
G VE A E+ + LKPD+ Y +++ G C+ G A++++NE +E G T
Sbjct: 268 GDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTY 327
Query: 157 NVV------------TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
N+V + + + G++P TFN +I C K+ AL L+ M+
Sbjct: 328 NIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWM 387
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P +++ ++ L
Sbjct: 388 YGIAPDAITYNSVLNGL 404
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+ + N + +DG + + +N ++ L + G + +A ++ +
Sbjct: 309 LQVMNEMVEDGCHPDIWTYNIVINGLCKM----------------GNISDAAVVMNDAIV 352
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------- 168
G PDV+T+ ++DG+CK + + A++L+ G+ + +T +L L
Sbjct: 353 KGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKE 412
Query: 169 ------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
EM G P IT+N +I+ C + ++ +A ++ M + G +P S + LI
Sbjct: 413 VNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLI 471
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A+++ + + + G+ PD T+T + FC GR + A+ LL ERG + +
Sbjct: 27 DQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTV 86
Query: 165 LQRL-EMGH----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
++ L GH P TFNNV+ ALC G I ++ LL + + G
Sbjct: 87 VRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGM 146
Query: 208 IPSRTSHDMLIKKL 221
++ + ++ I+ L
Sbjct: 147 SVNKFTCNIWIRGL 160
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
+ N + K G + N+ +++ + A+ + N + ++EEA +++ +
Sbjct: 400 VLNGLCKAG---KAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMS 456
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------------IQ 163
DGL PD ++ ++ GFC+ G + A L + E+G + T +Q
Sbjct: 457 QDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQ 516
Query: 164 LLQRL--EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +++ EM G+ P T+ ++ C + +A + L M G +PS + ++
Sbjct: 517 MAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVL 576
Query: 219 KKL 221
L
Sbjct: 577 NSL 579
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQ 156
GR+EEA ++ ++ + + PDV TY +M G CK + EA + L + +G T
Sbjct: 164 GRLEEAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTY 222
Query: 157 NVVTLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
N T+I + +M G +P +T+ ++I LC G + +AL L
Sbjct: 223 N--TIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEA 280
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
P ++ L+K L +Q
Sbjct: 281 QAKDLKPDLVVYNSLVKGLCRQ 302
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
K + L+E + + +DG FN L+ + D A F
Sbjct: 441 KINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD 500
Query: 98 --HLMVGRVEEAYEMLMNVK------NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++++G M M K + G KPD+YTY ++DG CK + A L E
Sbjct: 501 TFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEM 560
Query: 150 IERGVTQNVVTLIQLLQRLEMGH 172
+ +G ++ T ++L L M H
Sbjct: 561 VSKGFVPSMATFGRVLNSLAMNH 583
>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
Length = 625
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 36/209 (17%)
Query: 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------ 98
L E D+ + + K G FN ++ A N+ D A+ FSN
Sbjct: 362 GALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNY 421
Query: 99 -------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
GRV++A ++K++GL P++ +T ++ G C + ++ EL E I+
Sbjct: 422 GTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMID 481
Query: 152 RGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHK 194
RG+ + + ++ L +G P T T+N +I C GK+ +
Sbjct: 482 RGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDE 541
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
A+ LL +M +G PS +++ +I Q
Sbjct: 542 AMKLLGVMVFNGVKPSDVTYNTIINGYSQ 570
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 37/193 (19%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF--------------F 95
A + + + FNS+K +G ++ F L+ L ++ D + F
Sbjct: 431 AGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIF 490
Query: 96 SNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
N +M GRV EA + + G++P+ TY ++DG+C G+ +EAM+LL +
Sbjct: 491 FNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMV 550
Query: 151 ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
GV P +T+N +I G+I L LL M G P
Sbjct: 551 FNGVK------------------PSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPG 592
Query: 211 RTSHDMLIKKLDQ 223
+++ML++ L Q
Sbjct: 593 IVTYEMLLQGLFQ 605
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 21/208 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNE 87
L +N +S +A++ D + K + ++ +G + D DL+M M
Sbjct: 323 LCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLG 382
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+ +V+EA + N++ GL PD+ Y ++D C GR ++A+ N
Sbjct: 383 HHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFN 442
Query: 148 EAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVG 190
G+ N+V L+ L + G TI FN ++ LC G
Sbjct: 443 SLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKG 502
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ +A L LM G P+ +++ LI
Sbjct: 503 RVIEAKNLFDLMVRIGIEPNTNTYNTLI 530
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 44/202 (21%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
++ L + +F+++ G + V ++ ++ AL D A + F+
Sbjct: 219 LREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDC 278
Query: 97 --------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ G+ +EA + + G++PDV TYTA+MD CK G+S EA ++ +
Sbjct: 279 IMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDS 338
Query: 149 AIERGVTQNVVTLIQLL---------------------QRLEMGHIPRTITFNNVIQALC 187
++RG + T LL + +++GH FN ++ A
Sbjct: 339 LVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGH----HIFNMIMGAYA 394
Query: 188 GVGKIHKALLLLFLMYEHGKIP 209
K+ +ALL+ M + G P
Sbjct: 395 KHNKVDEALLVFSNMRQQGLNP 416
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 19/111 (17%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLN-EAIERG-VTQNVV---TLIQLLQR----- 167
G KPD+++YT ++ G C S +A++LL+ A +G +VV T+I L R
Sbjct: 166 GCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLD 225
Query: 168 ---------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
L+ G P +T++++I AL + KA + M ++G +P
Sbjct: 226 KAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMP 276
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 43/249 (17%)
Query: 16 LVDSPSRSPSAAESLDLKE-------NPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGT 68
++D +S ++L +K NP + + L E ++ N G
Sbjct: 325 MIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKLDEAEELLNGAIARGF 384
Query: 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-------------------RVEEAYE 109
+V F +L+ D A++ SN + R++EA E
Sbjct: 385 TPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKE 444
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL- 168
L + +GL P+V TYT+I+DG+CKVG A+E+ G N T L+ L
Sbjct: 445 TLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLI 504
Query: 169 ----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
E G P IT+ +IQ C + A L +M ++G P
Sbjct: 505 QDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQ 564
Query: 213 SHDMLIKKL 221
++++L L
Sbjct: 565 AYNVLTDAL 573
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A ++ + N+G K D+YTY+ ++ CK + NEA+ +L++ GV N+V
Sbjct: 609 GNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAY 668
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ + EM GH P T+ I + C +G+I +A L+ M
Sbjct: 669 TIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMER 728
Query: 205 HGKIPSRTSHDMLI 218
G P ++++ I
Sbjct: 729 DGVTPDVVTYNIFI 742
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 34/215 (15%)
Query: 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN 97
S+ Q V +K + + I I IK+ + + S FN+++ + T F S+
Sbjct: 651 SILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISS-GHKPSATTYTVFISS 709
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ +GR+EEA ++ ++ DG+ PDV TY ++G +G + A L ++ N
Sbjct: 710 YCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPN 769
Query: 158 VVT--------------------------------LIQLLQR-LEMGHIPRTITFNNVIQ 184
T + QLL+R ++ G P +T++++I
Sbjct: 770 CWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIA 829
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
C ++ +A +LL M P+ + MLIK
Sbjct: 830 GFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIK 864
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EA ++ + +DG +++TYT ++ G CK GR ++A LL+E RGV
Sbjct: 265 VREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGV--------- 315
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P T+N +I C G++ AL + LM ++G P +++ LI L
Sbjct: 316 ---------VPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGL 364
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 34/193 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+ +K+ + I ++++G N +N L+ L G+++EA
Sbjct: 330 CKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG-----------------GKLDEA 372
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER---------GVTQNV 158
E+L G P V T+T +++G+CK R ++A+ + + I GV NV
Sbjct: 373 EELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINV 432
Query: 159 VTLIQLLQRL-----EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ L+ EM G P +T+ ++I C VG + AL + LM G P+
Sbjct: 433 LIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPN 492
Query: 211 RTSHDMLIKKLDQ 223
++ LI L Q
Sbjct: 493 AWTYGSLIYGLIQ 505
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K L E + I + + G ++ + ++ ++ + D A F+
Sbjct: 641 CKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFN----------- 689
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
EM+ + G KP TYT + +CK+GR EA L+ E GVT +VVT +
Sbjct: 690 -EMI----SSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFING 744
Query: 168 L-EMGHIPRTI-TFNNVIQALC 187
MG+I R T ++ A C
Sbjct: 745 CGHMGYIDRAFSTLKRMVDASC 766
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 21/133 (15%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN--VVTL---- 161
+++L + GL P V TY++I+ GFCK R EA LL+ + + ++ N + T+
Sbjct: 806 WQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKC 865
Query: 162 ---IQLLQR--------LEMGHIPRTITFNNVIQALCGVGKIHKA----LLLLFLMYEHG 206
I+L + +E G P+ +++ +I LC G +A LL + Y H
Sbjct: 866 CCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHN 925
Query: 207 KIPSRTSHDMLIK 219
++ + +D L+K
Sbjct: 926 EVAWKILNDGLLK 938
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 36/194 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
I+ L + + + +++DG V + L+ +E D A + F
Sbjct: 504 IQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLF------------ 551
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
EM+ + +GL PD Y + D CK GR+ EA L + +GV VT L+
Sbjct: 552 -EMM---EQNGLTPDEQAYNVLTDALCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDG 604
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ + G T++ ++QALC K+++AL +L M G +
Sbjct: 605 FSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCN 664
Query: 211 RTSHDMLIKKLDQQ 224
++ ++I ++ ++
Sbjct: 665 IVAYTIIISEMIKE 678
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 23/230 (10%)
Query: 8 SPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVD--KIKASPLKERIDIFNSIKK 65
+P + L++ S S +A D++E ++QA R V ++ SP + + + ++
Sbjct: 101 APANYDKLVLSMISCSGTAE---DVREAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRF 157
Query: 66 DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYT 125
D T + ++ L+ +L + T + G + A+ ++ G++ D YT
Sbjct: 158 DMTEYMGKLYSHLVQE-GLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYT 216
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI-------- 177
A++ G+C+ +A LL G +N + L+Q L R
Sbjct: 217 CNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMV 276
Query: 178 ---------TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ +I+ LC G+IH A LL M G +PS +++ +I
Sbjct: 277 HDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMI 326
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA ++ GL P+V YTA++DGFCK+G N+AM L+NE I++G++ + V
Sbjct: 529 GSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVY 588
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + +E G + I C + + +A +L M
Sbjct: 589 TSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIG 648
Query: 205 HGKIPSRTSHDMLIKK 220
G P +T ++ LI+K
Sbjct: 649 TGITPDKTVYNCLIRK 664
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 33/185 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+D+ N +K G VS + L+ L +Q +V+EA +L +
Sbjct: 430 LDLLNQMKNKGMELDVSLYGTLIWGLC--KDQ--------------KVDEAKSLLHKMAG 473
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------- 168
GL+P+ YT IMD K G+ +EA+ LL++ ++ G NVVT L+ L
Sbjct: 474 CGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISE 533
Query: 169 ---------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
E+G P + +I C +G ++KA+ L+ M + G + + LI
Sbjct: 534 AISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLID 593
Query: 220 KLDQQ 224
+Q
Sbjct: 594 GYMKQ 598
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 37/177 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
K L+E + + ++K G V +N L+ + A +F
Sbjct: 247 KCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVV 306
Query: 98 --------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G V+EA ++ ++ G+ P+ +TYT+++DG CK GR ++A+ LL+E
Sbjct: 307 TFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEM 366
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+ +G+ +P +T+ ++ LC GK+ +A +L LM G
Sbjct: 367 VHQGL------------------VPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGG 405
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA + + +K G PDV TY +++DG+ K G E +L++E + G +VVT
Sbjct: 214 GELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTY 273
Query: 162 IQLLQ------RLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ R+E G + +TF+ + A C G + +A+ L M
Sbjct: 274 NALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRV 333
Query: 205 HGKIPSRTSHDMLI 218
G +P+ ++ L+
Sbjct: 334 RGMMPNEFTYTSLV 347
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 30 LDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLL--------- 79
LD P + +D + KA + E I FN +++ G + +V + L+
Sbjct: 507 LDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSL 566
Query: 80 -MALVMLNEQ-------DTAV--KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAI 129
A+ ++NE D V ++ +++A+ + + GL+ D+Y YT
Sbjct: 567 NKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCF 626
Query: 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE-MGHIPRTITFNNVIQAL 186
+ GFC + EA +L+E I G+T + L+++ + +G++ + N ++++
Sbjct: 627 ISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESV 684
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H M E A ++L +KN G++ DV Y ++ G CK + +EA LL++ G+
Sbjct: 419 GHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLR- 477
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P T+ + ++ AL GK +A+ LL + + G P+ ++
Sbjct: 478 -----------------PNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCA 520
Query: 217 LIKKL 221
LI L
Sbjct: 521 LIDGL 525
>gi|357129672|ref|XP_003566485.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like, partial [Brachypodium distachyon]
Length = 564
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 24/213 (11%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE---- 87
L E R +A D++ A+ + + N + K + W S F+ ++ + E
Sbjct: 123 LAEAGRVAEAHDAFDEMLAAGVAPNVSSLNILVKLHS-WRSSRFDLAYKEILRMRELGVE 181
Query: 88 --QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
T + VGR EA+ +L + +G P V TYT I+ G+C GR EAME+
Sbjct: 182 ADVGTYSTLVTGLCRVGRTGEAWGVLEWMLEEGCYPMVQTYTPIVQGYCHEGRVEEAMEV 241
Query: 146 LNEAIERGVTQNVVTLIQLLQRL-------EMGHI----------PRTITFNNVIQALCG 188
+ G NVVT L++ L E+ + P T+T+N + LC
Sbjct: 242 MATMERAGCPPNVVTYNVLIRALCDAARFDEVKQVLAESRSKDWTPSTVTYNTFMNGLCK 301
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +AL L +M G PS + +L+ L
Sbjct: 302 KGMAKEALEQLNVMLGEGLDPSDFTLSILLNCL 334
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
++E +++ ++++ G +V +N L+ AL D A R +E ++L
Sbjct: 235 VEEAMEVMATMERAGCPPNVVTYNVLIRALC-----DAA-----------RFDEVKQVLA 278
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------- 161
++ P TY M+G CK G + EA+E LN + G+ + TL
Sbjct: 279 ESRSKDWTPSTVTYNTFMNGLCKKGMAKEALEQLNVMLGEGLDPSDFTLSILLNCLCHDS 338
Query: 162 -----IQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
I LL+R + + +N V+ LCG+G L LL M + G P+ + +
Sbjct: 339 RVSDAIDLLERSTSLKWYAGVVGYNTVMSRLCGMGNWMGVLKLLTDMVKKGITPNTRTFN 398
Query: 216 MLIKKL 221
+ I+ L
Sbjct: 399 VFIRSL 404
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 53/106 (50%), Gaps = 15/106 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++ E ++ ++ + + PD TYT I+DG C+ + + A E++ERG++++++ ++
Sbjct: 441 KLSEVQHLISDMAVEKIAPDEVTYTVIIDGLCRDEKFDMATSCFLESLERGLSRDLLAVL 500
Query: 163 --------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKIH 193
++ Q +E G +P F+ I++ C G H
Sbjct: 501 INRLAHSGKIWEIFRVFQGMEREGFLPDNCIFDRTIRSFCRAGFCH 546
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EA E L + +GL P +T + +++ C R ++A++LL + VV
Sbjct: 303 GMAKEALEQLNVMLGEGLDPSDFTLSILLNCLCHDSRVSDAIDLLERSTSLKWYAGVVGY 362
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ RL + G P T TFN I++LC GK+ A LL +
Sbjct: 363 NTVMSRLCGMGNWMGVLKLLTDMVKKGITPNTRTFNVFIRSLCFGGKLSIAKSLL---HS 419
Query: 205 HGKIPSRTSHDMLI 218
G + + +++ LI
Sbjct: 420 QGFVANIVTYNTLI 433
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 24/132 (18%)
Query: 102 GRVEEAYEMLMNVKNDG------LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G +++ + ++ G P+V Y +++ + GR EA + +E + GV
Sbjct: 86 GDIDQVLALFAEIRTSGQGQGCTTPPNVLCYNTLVNSLAEAGRVAEAHDAFDEMLAAGVA 145
Query: 156 QNVVTL------------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
NV +L ++L+ E+G T++ ++ LC VG+ +A
Sbjct: 146 PNVSSLNILVKLHSWRSSRFDLAYKEILRMRELGVEADVGTYSTLVTGLCRVGRTGEAWG 205
Query: 198 LLFLMYEHGKIP 209
+L M E G P
Sbjct: 206 VLEWMLEEGCYP 217
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H +G + A + + GLKP V +YT+++ G+C G+ +EA L +E +G+
Sbjct: 444 NGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIA 503
Query: 156 QNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
N T L+ + LE +P +T+N +I+ C G KA L
Sbjct: 504 PNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFEL 563
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L M + G +P ++ LI L
Sbjct: 564 LNQMVQKGLVPDTYTYRPLISSL 586
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V +A++++ VK G P ++ Y A+++ CK G+ +EA L E E+G+ N VT
Sbjct: 345 GKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTY 404
Query: 162 ----------------IQLLQRLEMGHIPRTIT-FNNVIQALCGVGKIHKALLLLFLMYE 204
I L ++ M I T+ +N++I C +G + A+ M +
Sbjct: 405 SILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMID 464
Query: 205 HGKIPSRTSHDMLI 218
G P+ S+ LI
Sbjct: 465 KGLKPTVVSYTSLI 478
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 19/141 (13%)
Query: 95 FSNHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F +HL G +E+A + L N GL + +Y ++ GFCK+GR EA +LL+E I+
Sbjct: 757 FLDHLAREGSMEKAVQ-LHNDMLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNA 815
Query: 154 VTQNVVT----LIQLLQR-------------LEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ + +T + Q +R L G P T+ +N +I C G++ KA
Sbjct: 816 IFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAF 875
Query: 197 LLLFLMYEHGKIPSRTSHDML 217
L M G P++ +H L
Sbjct: 876 ELRDDMIRRGVKPNQATHKSL 896
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 25/141 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA + + ++ + K + Y+A++ G+CK GR +A+ + E ++RGV ++V
Sbjct: 590 GRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCY 649
Query: 162 IQLL---------------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
L+ QRL P + + ++I G + KA +
Sbjct: 650 AVLIDGTIKEQDTSAVFGLLKNMHDQRLR----PDKVIYTSMIDGYSKAGSVKKAFGIWD 705
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
+M + G P+ ++ LI +L
Sbjct: 706 IMIDEGCTPNIVTYTTLINEL 726
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++A+ + + ++G P++ TYT +++ CK G ++A L E + T N VT
Sbjct: 695 GSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTY 754
Query: 162 ----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+QL + G + T+++N +++ C +G++ +A LL M ++
Sbjct: 755 CCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDN 814
Query: 206 GKIPSRTSHDMLI 218
P ++ +I
Sbjct: 815 AIFPDCITYSTII 827
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 34/176 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L++ + + + K G + + + L+ + EQDT+ F
Sbjct: 623 KEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTI--KEQDTSAVF-------------- 666
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+L N+ + L+PD YT+++DG+ K G +A + + I+ G T N+V
Sbjct: 667 GLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIV--------- 717
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
T+ +I LC G + KA LL M P+ ++ + L ++
Sbjct: 718 ---------TYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLARE 764
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A EM+ +++ L +V Y ++ G CK R EA+E+ N I++G+T + VT L+
Sbjct: 246 KAKEMIQRMESSDL--NVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLV 303
Query: 166 -----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ +E+G +P +++++ L GK+ A L+ + + G +
Sbjct: 304 LGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAM 363
Query: 209 PSRTSHDMLIKKL 221
PS ++ LI L
Sbjct: 364 PSLFVYNALINSL 376
>gi|414865591|tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea mays]
Length = 838
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA---IERGVTQNV 158
G+++EAYE+ +K+ GLKP +TY +++ G C+ ++ A +LL E + +N
Sbjct: 486 GKLDEAYEIFNQMKDLGLKPSEFTYNSLLYGICRRKDTSAAADLLREMRANAHKPWIKNC 545
Query: 159 VTLIQLL--------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++Q L LE+G +P +T++ + +C VG I AL L +
Sbjct: 546 TDMVQQLCLSGRITEALQFLDGMLELGFLPDIVTYSAAMNGMCKVGDIENALGLFLDISS 605
Query: 205 HGKIPSRTSHDMLI 218
+P +H++LI
Sbjct: 606 KCYLPDVVAHNILI 619
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F D ++ L L + T + VG +E A + +++ + PDV + +++GF
Sbjct: 564 FLDGMLELGFLPDIVTYSAAMNGMCKVGDIENALGLFLDISSKCYLPDVVAHNILINGFR 623
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVT-----------------LIQLLQRLEMGHIPRTI 177
K G+ +EA E++ E + +G+ +VVT + + + ++ P +
Sbjct: 624 KAGKFDEAQEIMEEMLSKGMLPSVVTYNLMIDIWCKSGSIDKAITCVYKMIDEEKPPTVV 683
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ +++ LC G+ +A++L M E G P+ ++ L+ L
Sbjct: 684 TYTSLLDGLCNAGRPDEAIVLWCKMREKGCSPNGIAYTALVNGL 727
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +EA + ++ G P+ YTA+++G CK GR A+ E +G ++ +
Sbjct: 695 AGRPDEAIVLWCKMREKGCSPNGIAYTALVNGLCKCGRMETAVNYYEEMKTKGFDLDIFS 754
Query: 161 LIQL 164
L+ L
Sbjct: 755 LLNL 758
>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rhodocnemis]
Length = 428
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 161 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGHLDEGFRLKSAMLASG 204
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
+ PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 205 VLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAM 264
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 265 EIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 321
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD +TYT ++DG CK G + A E I+ + + V
Sbjct: 293 GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 352
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ +I C G + K LL M
Sbjct: 353 AALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 412
Query: 205 HGKIPSRTSHDMLI 218
+G PS ++++L+
Sbjct: 413 NGHAPSVVTYNVLM 426
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 140 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSA 199
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G IP +TF +I C G+
Sbjct: 200 MLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGR 259
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 260 VDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKK 292
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +KE +F + K G V +N L+ ++ E +TA F+
Sbjct: 277 KDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNT----------- 325
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------- 161
+ G+ PD+ +Y +++GFCK+ + ++AM L NE + + NVVT
Sbjct: 326 -----MAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGL 380
Query: 162 ---------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+QL+ ++ + G P +T+N++I AL ++ KA+ L+ + G PS
Sbjct: 381 SKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSM 440
Query: 212 TSHDMLIKKL 221
++ +LI L
Sbjct: 441 YTYTILIDGL 450
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S +VG++++A ++ + + +KPD YT+ ++DGFCK + E +
Sbjct: 232 TYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMM 291
Query: 150 IERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKI 192
+++G+ +VVT L+ + G P ++N +I C + K+
Sbjct: 292 MKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKV 351
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
KA+ L M+ IP+ +++ LI L +
Sbjct: 352 DKAMNLFNEMHCKNIIPNVVTYNSLIDGLSK 382
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F+D L+AL +Q + VG A ++L V ++ + Y ++ G C
Sbjct: 147 FHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMC 206
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMGHI-PRTI 177
K N+A +L +E + +G++ NVVT I L ++ + +I P
Sbjct: 207 KDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGY 266
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN ++ C K+ + + +M + G IP +++ L+
Sbjct: 267 TFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLM 307
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 33/119 (27%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A ++ K+ G++P +YTYT ++DG CKV E + +T N
Sbjct: 420 QVDKAIALITKFKDQGIQPSMYTYTILIDGLCKV----EGYD---------ITVN----- 461
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+N +I C G +AL LL M + IP+ ++++ I+ L
Sbjct: 462 ---------------TYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSL 505
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 43/214 (20%)
Query: 48 IKASPLKERIDIFNSIK-KDGTNW-----SVSDFNDLLMALVMLNEQDTAVKFFSNHLM- 100
KA + E + +F+ ++ K G+NW V FN L+ L + +++ + M
Sbjct: 327 CKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMG 386
Query: 101 -------------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141
G + A+E+ + +G++P+V T ++DG CK GR +
Sbjct: 387 NINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHR 446
Query: 142 AMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQ 184
A+E NE +G+ N T L+ + L G P + + ++I
Sbjct: 447 AVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLIS 506
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
LC G+++ A +++ + G R+ +++LI
Sbjct: 507 GLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLI 540
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 38/224 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P + VD + K + ++ FN +K G + + + L+ A +N + A++
Sbjct: 426 PNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQC 485
Query: 95 FSNHL-------------------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
F L + GR+ +A ++ +K G D Y ++ GFCK
Sbjct: 486 FEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCK 545
Query: 136 VGRSNEAMELLNEAIERGVTQNVV---TLIQLLQR--------------LEMGHIPRTIT 178
+ ELL E E GV + + TLI L + ++ G P +T
Sbjct: 546 KKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVT 605
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS-HDMLIKKL 221
+ +I A C + + + + M K+P T +++LI L
Sbjct: 606 YGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDAL 649
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E YE+L ++ G+KPD TY ++ K G A +++ + I+ G+ +VVT
Sbjct: 548 KLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYG 607
Query: 163 QLLQRL--------------EMGHI----PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ EM P T+ +N +I ALC + +A+ L+ M
Sbjct: 608 AIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKV 667
Query: 205 HGKIPSRTSHDMLIK 219
P+ T+++ ++K
Sbjct: 668 KRVRPNTTTYNAILK 682
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 33/185 (17%)
Query: 64 KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR---VEEAYEMLMNVKNDGLK 120
+K+G W V L ++ L A + +GR ++ E+L ++ ++
Sbjct: 260 QKNGVAWEV------LHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIR 313
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIER------GVTQNVV---TLI--------- 162
P V T+ +++ CK R +EA+++ + + GV +VV TLI
Sbjct: 314 PSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKE 373
Query: 163 ----QLLQRLEMGHI--PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
LL+ ++MG+I P T+T+N +I G +A L M E G P+ + +
Sbjct: 374 EDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNT 433
Query: 217 LIKKL 221
L+ L
Sbjct: 434 LVDGL 438
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVV 159
G A +++ + +GL+P V TY AI+ +C +E M++ E V N V
Sbjct: 581 TGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTV 640
Query: 160 TL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLM 202
I L++ +++ + P T T+N +++ + +HKA L+ M
Sbjct: 641 IYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRM 700
Query: 203 YEHGKIPSRTSHDMLIKKL 221
E P + ++L + L
Sbjct: 701 VEEACRPDYITMEVLTEWL 719
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 71/236 (30%)
Query: 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN 97
++ A+RFV A I +F S+++ G + FN +L L
Sbjct: 151 AIIAERFV---AAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSK----------- 196
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
RVE AY L V K DV +Y I +G+C + R+ +A+E+L E +ERG+T
Sbjct: 197 -----RVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPT 251
Query: 158 VVT--------------------LIQLLQR------------------------------ 167
+ T +Q+ +R
Sbjct: 252 ITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFN 311
Query: 168 --LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G +P T T+N +IQ LC + A+L+ M + G +P+ T+++++I+ L
Sbjct: 312 EMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGL 367
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 40/196 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV-------- 104
+K +FN + +G S + +N ++ L + + AV F + G V
Sbjct: 303 IKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNV 362
Query: 105 -----------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++A E + +K DG +P+V TY + FC G + + + E + +G
Sbjct: 363 VIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMF-EKMGQG 421
Query: 154 VTQN--------------------VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193
N VV LL+ ++ G IPR TFN V+ L G
Sbjct: 422 SLPNLDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGLLLTGNQA 481
Query: 194 KALLLLFLMYEHGKIP 209
A +L L + G++P
Sbjct: 482 FAKEILRLQSKCGRLP 497
>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1188
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 40/222 (18%)
Query: 33 KENPRSLQAQRFVDKIK----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
KENP ++ + FV I+ A+ +K+ +++ + + K G F LL AL
Sbjct: 162 KENPELIEPELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSV 221
Query: 89 DTAVKFFSN------------------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
A K F + G++ EA E+L+ +K GL+PD+ +T ++
Sbjct: 222 KDASKVFEDMREKIPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLL 281
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNV---VTLIQLLQRLE---------------MGH 172
G+ G+ +A +LLN+ +RG N LIQ L R E G
Sbjct: 282 SGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGC 341
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+T+ +I C G I K +L M + G +PS+ ++
Sbjct: 342 EADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTY 383
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A E+L + G +PD Y + ++D CK G +A ++ + E+ + N+
Sbjct: 186 VKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMREK-IPPNLRYFTS 244
Query: 164 LL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LL Q E G P + F N++ GK+ A LL M + G
Sbjct: 245 LLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRG 304
Query: 207 KIPSRTSHDMLIKKL 221
P+ + +LI+ L
Sbjct: 305 YEPNANCYTVLIQAL 319
>gi|147789026|emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
Length = 993
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 17/111 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---V 158
G VE+A L +K DGLKP++ TYTAIM GFCK G+ +EA L G+ +
Sbjct: 207 GYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMY 266
Query: 159 VTLIQ-------------LLQRLE-MGHIPRTITFNNVIQALCGVGKIHKA 195
VTLI LL+ +E G P +T+N++I LC G+ +A
Sbjct: 267 VTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEA 317
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 41/179 (22%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------------- 96
+++ I +KKDG ++ + +++ + D A F
Sbjct: 209 VEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVT 268
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
G ++ + +L +++ G+ P + TY +I++G CK GR++EA E + +G
Sbjct: 269 LIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADE-----VSKG 323
Query: 154 VTQNVVTLIQLL----------------QRLEM-GHIPRTITFNNVIQALCGVGKIHKA 195
+ + VT LL +RLE G + N +I+AL VG + A
Sbjct: 324 IAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDA 382
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
LMVG +E+AY + L D TY +++G+C+V R EA+E+ +E
Sbjct: 374 LMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVXRIEEALEIFDE 423
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A ++ VK G+ ++Y Y ++++G C+ G +A L +
Sbjct: 653 GHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDS------------- 699
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L+++++ +P IT+ +I +LC G + A L M G P+ ++ LI
Sbjct: 700 ---LEKIDL--VPSEITYATLIDSLCKEGCLLDAKQLFEKMVXKGFNPNVRVYNSLI 751
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ +AY++++ + + D+ Y+ ++D CK G ++A++L ++G+ N+
Sbjct: 618 GRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYA- 676
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N+VI LC G + +A L + + +PS ++ LI L
Sbjct: 677 -----------------YNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSL 719
Query: 222 DQQ 224
++
Sbjct: 720 CKE 722
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+F ++V + + EM+ G+ PD +YT ++DGF + G +A+ L + + G
Sbjct: 168 YFREGVLVEAIRKHKEMI----EKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDG 223
Query: 154 VTQNVVTLIQ-LLQRLEMGHIPRTIT----------------FNNVIQALCGVGKIHKAL 196
+ N+VT +L + G + T + +I C G I
Sbjct: 224 LKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVF 283
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
LL M + G PS +++ +I L
Sbjct: 284 GLLEDMEKRGISPSIVTYNSIINGL 308
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A ++ + G P+V Y +++DG+CK G EA+ LL + R + + T+
Sbjct: 723 GCLLDAKQLFEKMVXKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTV 782
Query: 162 IQLLQRL--------EMGH---------IPRTITFNNVIQALCGVGKIHKA 195
L+ +G +P + F +++ LC G++ +A
Sbjct: 783 SALINGYCHKGDMEGALGFFFEFKKKDILPDFLGFMYLVRGLCAKGRMEEA 833
>gi|359493285|ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Vitis vinifera]
Length = 993
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 17/111 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---V 158
G VE+A L +K DGLKP++ TYTAIM GFCK G+ +EA L G+ +
Sbjct: 207 GYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMY 266
Query: 159 VTLIQ-------------LLQRLE-MGHIPRTITFNNVIQALCGVGKIHKA 195
VTLI LL+ +E G P +T+N++I LC G+ +A
Sbjct: 267 VTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEA 317
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 41/179 (22%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------------- 96
+++ I +KKDG ++ + +++ + D A F
Sbjct: 209 VEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVT 268
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
G ++ + +L +++ G+ P + TY +I++G CK GR++EA E + +G
Sbjct: 269 LIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADE-----VSKG 323
Query: 154 VTQNVVTLIQLL----------------QRLEM-GHIPRTITFNNVIQALCGVGKIHKA 195
+ + VT LL +RLE G + N +I+AL VG + A
Sbjct: 324 IAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDA 382
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
LMVG +E+AY + L D TY +++G+C+V R EA+E+ +E
Sbjct: 374 LMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDE 423
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 37/169 (21%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E +DL P + +D + K L + +F + G N +V +N L+
Sbjct: 701 EKIDLV--PSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLI------- 751
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
D KF G +EEA +L+++K +KPD +T +A+++G+C G A+
Sbjct: 752 --DGYCKF-------GNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFF 802
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
E ++ + +P + F +++ LC G++ +A
Sbjct: 803 FEFKKKDI------------------LPDFLGFMYLVRGLCAKGRMEEA 833
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ +AY++++ + + D+ Y+ ++D CK G ++A++L ++G+ N+
Sbjct: 618 GRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYA- 676
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N+VI LC G + +A L + + +PS ++ LI L
Sbjct: 677 -----------------YNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSL 719
Query: 222 DQQ 224
++
Sbjct: 720 CKE 722
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+F ++V + + EM+ G+ PD +YT ++DGF + G +A+ L + + G
Sbjct: 168 YFREGVLVEAIRKHKEMI----EKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDG 223
Query: 154 VTQNVVTLIQ-LLQRLEMGHIPRTIT----------------FNNVIQALCGVGKIHKAL 196
+ N+VT +L + G + T + +I C G I
Sbjct: 224 LKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVF 283
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
LL M + G PS +++ +I L
Sbjct: 284 GLLEDMEKRGISPSIVTYNSIINGL 308
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A ++ VK G+ ++Y Y ++++G C+ G +A L +
Sbjct: 653 GHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDS------------- 699
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L+++++ +P IT+ +I +LC G + A L M G P+ ++ LI
Sbjct: 700 ---LEKIDL--VPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLI 751
>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Brachypodium distachyon]
Length = 714
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +++AY + M + DGL+ D TYT ++ C+ GR EA + + + G++ +VVT
Sbjct: 523 TGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVT 582
Query: 161 LIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ LE G P +T+N ++ ALC +G+ A M
Sbjct: 583 YTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEML 642
Query: 204 EHGKIPSRTSHDMLI 218
E G +P++ ++ +LI
Sbjct: 643 ERGLVPNKYTYTLLI 657
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F + G + AY + +G++P+ TY +M C++GR+ A + +E
Sbjct: 582 TYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEM 641
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ERG+ +P T+ +I C G A+ L M++ G P
Sbjct: 642 LERGL------------------VPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHP 683
Query: 210 SRTSHDMLIKKLDQ 223
+H+ L K +
Sbjct: 684 DHCTHNALFKGFGE 697
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 37/200 (18%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL 99
QAQ+ + AS + + F + + G V + N +L L D +S+ L
Sbjct: 165 QAQK---SVPASCSTQCLSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDML 221
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG------ 153
+G ++P ++TY ++D FCK GR ++A+ LL + R
Sbjct: 222 QLG----------------VEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPN 265
Query: 154 -VTQNVVT-----------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
VT NVV QL+ + + T+N +I L + KA LL
Sbjct: 266 DVTYNVVINGLARKGELEKAAQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALLLE 325
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M G +P+ +++ LI L
Sbjct: 326 MENEGIVPTVVTYNTLIDGL 345
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 23/133 (17%)
Query: 91 AVKFFSNHLMVGR-----VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
A F N L+ G VE+A +L+ ++N+G+ P V TY ++DG K G + A
Sbjct: 298 ASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVK 357
Query: 146 LNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+E +G+ +P IT+N++I C G + +AL L +
Sbjct: 358 FDEMRAKGL------------------LPDLITYNSLINGYCKAGNLKQALCLFGDLKRA 399
Query: 206 GKIPSRTSHDMLI 218
G P+ ++++LI
Sbjct: 400 GLGPTVLTYNILI 412
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 34 ENPRSLQAQRFVDKIKASPLKER-----IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
E R ++A+ D + AS L I I ++ + F +L V NE
Sbjct: 557 ERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEV 616
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
V + M GR E AY+ + GL P+ YTYT ++DG CK G A+ L E
Sbjct: 617 TYNVLMHALCRM-GRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCE 675
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITF-NNVI 183
++G+ + T L + GH+ + + NV+
Sbjct: 676 MHQKGIHPDHCTHNALFKGFGEGHMYDAVQYLENVV 711
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 17/143 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S L +G + A+++ + G+ D TY ++DG CK G +A L + + G+
Sbjct: 483 SAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLR 542
Query: 156 QNVVTLIQLLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLL 198
+ VT L+ E G + P +T+ I C G ++ A
Sbjct: 543 LDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGW 602
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
M E G P+ ++++L+ L
Sbjct: 603 FRKMLEEGVEPNEVTYNVLMHAL 625
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 17/162 (10%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
D + A +L + T + + G +++A + ++K GL P V TY ++DG+C++
Sbjct: 359 DEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRL 418
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITF 179
G A L E E +V T L+ + L G P +
Sbjct: 419 GDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAY 478
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
N I A +G I A L M G ++++LI L
Sbjct: 479 NTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGL 520
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A++ ++ G++P+V TYTA+++G C R ++A LL++ I++ +T NV+T
Sbjct: 205 RVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 264
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL + + M P +T+++++ LC +I +A + LM
Sbjct: 265 ALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSK 324
Query: 206 GKIPSRTSHDMLI 218
G + S++ LI
Sbjct: 325 GCLADVVSYNTLI 337
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M + + G DV +Y +++GFCK R + M+L E +RG+ N VT
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369
Query: 163 QLLQR-LEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLL 199
L+Q + G + P T+N ++ LC G++ KAL++
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIF 423
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 44/219 (20%)
Query: 22 RSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA 81
R+ S+ DL+E L R D IK L + ID+F+ + K S+ DFN LL A
Sbjct: 42 RASSSVSGGDLRER---LSKTRLRD-IK---LNDAIDLFSDMVKSRPFPSIVDFNRLLSA 94
Query: 82 LVMLNEQDTAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPD 122
+V L + D + ++G +V A +L + G +PD
Sbjct: 95 IVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPD 154
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182
T ++++GFC+ R ++A+ L+++ + E+G+ P + +N +
Sbjct: 155 RVTIGSLVNGFCRRNRVSDAVSLVDKMV------------------EIGYKPDIVAYNAI 196
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +LC +++ A + G P+ ++ L+ L
Sbjct: 197 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGL 235
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VEEA+ + ++ GLKPD+ TYT +M G C G +E L + + G+ +N TL
Sbjct: 449 GKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 508
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A ++ + G KPD+ Y AI+D CK R N+A + E +G+ NVVT
Sbjct: 170 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT 229
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L + P IT++ ++ A GK+ +A L M
Sbjct: 230 ALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289
Query: 206 GKIPSRTSHDMLIKKL 221
P ++ L+ L
Sbjct: 290 SIDPDIVTYSSLVNGL 305
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 37/177 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
KA +++ + +F + + G + +N L+ + D A +FFS
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 401
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ G +E+A + +++ + D+ TYT ++ G CK G+ EA L
Sbjct: 402 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 461
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+G+ P +T+ ++ LC G +H+ L M + G
Sbjct: 462 SLKGLK------------------PDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
Length = 603
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 19/142 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN--V 158
+GR EEA ++ + G KPD++TY I+D FCK G A +L + V N +
Sbjct: 351 IGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYI 410
Query: 159 VTLI--------------QLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
T+I +L QR L+ G +P T+T+N VI ALC + K+ +AL LL M
Sbjct: 411 YTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQ 470
Query: 204 EHGK--IPSRTSHDMLIKKLDQ 223
+ PS ++ M+I L +
Sbjct: 471 RRKEELEPSIVTYSMIIHGLGK 492
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 37/172 (21%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
+K+S L+E ++++ I KDG S +N ++ AL L + D A++
Sbjct: 419 VKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEP 478
Query: 98 ---------HLM--VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
H + VG E A+++L + ++G+ PD +TYT+++ G+ + AMELL
Sbjct: 479 SIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELL 538
Query: 147 NEAIERGV---TQNVVTLIQLLQRLEM-------------GHIPRTITFNNV 182
E ++ G+ TL+Q+L R ++ GH P TF V
Sbjct: 539 EEMLKAGIFPDDHTYGTLVQILCRSDVDAAWDLLQEMMRNGHTPNEFTFKAV 590
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+EEA E+ + DG+ P TY +++ CK+ + +EA+ELL E
Sbjct: 423 RLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLRE-------------- 468
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+QR + P +T++ +I L VG +A LL M ++G IP ++ LI+ L
Sbjct: 469 --MQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTL 525
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE A ++ + G KPD+ Y++++DG K GR +EA +L++ + RG V
Sbjct: 213 KVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYT 272
Query: 163 QLLQRL-EMGHIPRTI----------------TFNNVIQALCGVGKIHKALLLLFLMYEH 205
++ L + G I + T++ ++ G+GK+ KA ++ M +
Sbjct: 273 SIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVMEEMADR 332
Query: 206 GKIPSRTSHDMLIKKL 221
P S+ M I+ L
Sbjct: 333 DCAPDTISYTMFIEAL 348
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 33/155 (21%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +K G + + +L AL + D AV +F++ V +
Sbjct: 150 LLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNS----------------VSPNK 193
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE--------- 169
+P ++TYT ++DG CK + A ++ E I +G +++ L+ L
Sbjct: 194 CEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEAR 253
Query: 170 --------MGHIPRTITFNNVIQALCGVGKIHKAL 196
G P + + +++ LC G+I +A+
Sbjct: 254 KLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAV 288
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GRV+EA +ML + G++P VYTYT + C + EA+EL+ +RG NV T
Sbjct: 282 GRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTY 341
Query: 161 --LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LI L R L+ G +P T+T+N +I LC G+ AL + M
Sbjct: 342 TALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEG 401
Query: 205 HGKIPSRTSHDMLIKKL 221
HG + + +++ +IK L
Sbjct: 402 HGSLANTQTYNEIIKGL 418
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R EA ++ + GL P+V TYT ++DG C+ GR+ A ++ ++ +R N+ T
Sbjct: 563 RFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYS 622
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L EM G P +TF ++I +G+I A LLL M +
Sbjct: 623 SLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDM 682
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P+ ++ +L+K L ++
Sbjct: 683 GCKPNYRTYSVLLKGLQKE 701
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 17/132 (12%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI---- 162
A+ + + +G P+ TY+ +++G C GR +EA+++L E IE+G+ V T
Sbjct: 252 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPIT 311
Query: 163 ------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+L+ R+ + G P T+ +I L +GK+ A+ L M + G +P
Sbjct: 312 ALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVP 371
Query: 210 SRTSHDMLIKKL 221
+ +++ LI +L
Sbjct: 372 NTVTYNALINEL 383
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 86/201 (42%), Gaps = 36/201 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SN 97
+ IF+ ++ G+ + +N+++ L + + + A+ F +
Sbjct: 393 LKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 452
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+L G V A +L +K +G +PD +TY ++ GF K G+ A E +E G+ N
Sbjct: 453 YLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPN 512
Query: 158 VVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V+ + LL+R+ EMG P ++N VI L + +A +
Sbjct: 513 PVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICD 572
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M E G +P+ ++ LI L
Sbjct: 573 KMVEQGLLPNVITYTTLIDGL 593
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+ A +L ++ G P+V +Y A+++G K R +EA ++ ++ +E+G+ NV+T
Sbjct: 527 GKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITY 586
Query: 162 IQLLQRL----------EMGH-------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++ H +P T++++I LC GK +A +LL M
Sbjct: 587 TTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMER 646
Query: 205 HGKIPSRTSHDMLI 218
G P + LI
Sbjct: 647 KGLAPDEVTFTSLI 660
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++E A + + +GL P+ TY A+++ C GR + A+++ + G N T
Sbjct: 351 LGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQT 410
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ + L+MG +P +T+N +I G ++ A LL LM
Sbjct: 411 YNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMK 470
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
E+G P +++ L+ +
Sbjct: 471 ENGCEPDEWTYNELVSGFSK 490
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ +EA +L ++ GL PD T+T+++DGF +GR + A LL ++ G N T
Sbjct: 632 GKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTY 691
Query: 162 IQLLQRLE 169
LL+ L+
Sbjct: 692 SVLLKGLQ 699
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRVE+AY + +N+ DG KPDV +++ F K GR +A++L ++ NVVT
Sbjct: 285 GRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTY 344
Query: 162 IQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ L G P + T++ +I C ++ KALLLL M
Sbjct: 345 NTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMD 404
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
E G P ++ LI L +
Sbjct: 405 EKGFPPCPAAYCSLINALGK 424
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 30 LDLKENPRSLQAQRFVDKIK----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV-- 83
L+LKEN A+ + IK E +D+FN +KK G N V +N L+ LV
Sbjct: 436 LELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRA 495
Query: 84 -MLNEQDTAVKF---------FSNHLMV-------GRVEEAYEMLMNVKNDGLKPDVYTY 126
M+ E +A++ ++H ++ GR E+A EM M +K+ +KPD +Y
Sbjct: 496 GMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSY 555
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
I+ + G EA +L+ E RG + +T +L+
Sbjct: 556 NTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILE 595
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 33/178 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + + + +F IK + S +N +++ L + G E+ +
Sbjct: 143 KAKMVNKALSVFYQIKSRKCKPTASTYNSMILML----------------MQEGHHEKIH 186
Query: 109 EMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV--TQNVVTL---- 161
E+ + N+G PD TY+ ++ F K+GR + A+ L +E G+ T + T
Sbjct: 187 ELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAI 246
Query: 162 ---------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ L+Q + + G P T+ +I+ L G++ A + M + G P
Sbjct: 247 YFKSGDEKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKP 304
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 84/245 (34%), Gaps = 72/245 (29%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K+ +++ +F ++ KDG V N+L+ + A+K F
Sbjct: 283 KSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVV 342
Query: 97 --NHLMVGRVE------EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
N ++ E EA +K +G+ P +TY+ ++DGFCK R +A+ LL E
Sbjct: 343 TYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEE 402
Query: 149 AIERGVTQNVVTLIQLLQRL---------------------------------------- 168
E+G L+ L
Sbjct: 403 MDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGR 462
Query: 169 ------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
++G P +N ++ L G I +A L M E+G P SH++
Sbjct: 463 PSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNI 522
Query: 217 LIKKL 221
++ L
Sbjct: 523 ILNGL 527
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 32/201 (15%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-----------VKFF----SN 97
++E + + + G V + LL L + + D A V F
Sbjct: 245 VREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGG 304
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
L G++ EA E+ + G +PD +TY+ +M G CK+GR A+ LL E ++G N
Sbjct: 305 CLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPN 364
Query: 158 VVTLIQLLQRL--------------EMGHIPRTIT---FNNVIQALCGVGKIHKALLLLF 200
VVT +L EM T+ +N +I ALC G++ +A+ L+
Sbjct: 365 VVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQ 424
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G P S++ +I L
Sbjct: 425 EMRSQGCNPDICSYNTIIYHL 445
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA ++ +++ G PD+ +Y I+ C + EA + +E GV N +T
Sbjct: 414 GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITY 473
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM G +++N +I+A+C G + ++L+LL M E
Sbjct: 474 NTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAE 533
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ S+++LI +L ++
Sbjct: 534 KGIKPNNVSYNILISELCKE 553
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR +EA +L + G PD Y ++ C G EA LLNE + G +V
Sbjct: 172 LGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVN- 230
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
TF++V++ +CG+G++ +A L+ M G +P ++ L++
Sbjct: 231 -----------------TFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQG 273
Query: 221 L 221
L
Sbjct: 274 L 274
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 36/202 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN--------------- 97
+ E + + ++ G N + +N ++ L + + A F N
Sbjct: 416 MDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNT 475
Query: 98 --HLMV--GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
H ++ GR ++A + + G DV +Y ++ CK G + ++ LL E E+G
Sbjct: 476 IIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKG 535
Query: 154 VTQNVVT---LIQLL--------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ N V+ LI L Q L G P +T+N +I LC +G +H AL
Sbjct: 536 IKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAAL 595
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
LL ++ P ++++LI
Sbjct: 596 NLLEKLHNENVHPDIITYNILI 617
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE------RGV 154
+GRV EA ++ + G P V TY ++ G C+V +++EA +L E V
Sbjct: 242 LGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTV 301
Query: 155 TQNVVTLIQLLQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ +L + E+ G P T++ ++ LC +G+I A+ LL M + G
Sbjct: 302 IGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGF 361
Query: 208 IPSRTSHDMLI 218
P+ ++ +++
Sbjct: 362 APNVVTYTIVL 372
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 16/97 (16%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV +A E+ + N GL PD+ TY +++G CK+G + A+ LL + V +++T
Sbjct: 555 RVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYN 614
Query: 162 --------IQLLQRLEMGHIPRTITFNNVIQALCGVG 190
++LL M N + A+C VG
Sbjct: 615 ILISWHCKVRLLDDAAM-------LLNRAMAAVCPVG 644
>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
Length = 535
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 37/172 (21%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
+K+S L+E ++++ I KDG S +N ++ AL L + D A++
Sbjct: 362 VKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEP 421
Query: 98 ---------HLM--VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
H + VG E A+++L + ++G+ PD +TYT+++ G+ + AMELL
Sbjct: 422 SIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELL 481
Query: 147 NEAIERGV---TQNVVTLIQLLQRLEM-------------GHIPRTITFNNV 182
E ++ G+ TL+Q+L R ++ GH P TF V
Sbjct: 482 EEMLKAGIFPDDHTYGTLVQILCRSDVDAAWDLLQEMMRNGHTPNEFTFKAV 533
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 19/142 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN--V 158
+GR EEA ++ + G KPD++TY I+D FCK G A +L + V N +
Sbjct: 294 IGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYI 353
Query: 159 VTLI--------------QLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
T+I +L QR L+ G +P T+T+N VI ALC + K+ +AL LL M
Sbjct: 354 YTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQ 413
Query: 204 EHGK--IPSRTSHDMLIKKLDQ 223
+ PS ++ M+I L +
Sbjct: 414 RRKEELEPSIVTYSMIIHGLGK 435
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+EEA E+ + DG+ P TY +++ CK+ + +EA+ELL E
Sbjct: 366 RLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLRE-------------- 411
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+QR + P +T++ +I L VG +A LL M ++G IP ++ LI+ L
Sbjct: 412 --MQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTL 468
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 17/204 (8%)
Query: 35 NPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
N R+ +A R + I+A I + + K G + ++ + ++A T
Sbjct: 88 NSRTEEACRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVL 147
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+VE A ++ + G KPD+ Y++++DG K GR +EA +L++ I RG
Sbjct: 148 VDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGP 207
Query: 155 TQNVVTLIQLLQRL-EMGHIPRTI----------------TFNNVIQALCGVGKIHKALL 197
V ++ L + G I + T++ ++ G+GK+ +A
Sbjct: 208 PPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFA 267
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
++ M + P S+ M I+ L
Sbjct: 268 VMEEMADRDCAPDTISYTMFIEAL 291
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 52/188 (27%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T H G + A+E++ +K +G P++YTY AI+ GFCK G+ EA ++L
Sbjct: 358 NTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRM 417
Query: 149 AIERGVTQNVVTL-IQLLQRLEMGHI---------------------------------- 173
A +G+ + VT I + + + GHI
Sbjct: 418 ATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQ 477
Query: 174 -----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P T+ ++I C +GK+ AL + M +HG +P ++
Sbjct: 478 MEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGA 537
Query: 217 LIKKLDQQ 224
LI L ++
Sbjct: 538 LISSLCKE 545
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++A+ +L + GLKP+VYT+T+++DG CK+G A L + ++
Sbjct: 265 GYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVK---------- 314
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ P T+ +I C GK+ +A +LL M E G P+ ++ LI
Sbjct: 315 -------SSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 364
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ A +L + GL P+ TYT ++ G CK G + A EL+N+
Sbjct: 336 GKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNK------------- 382
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+LE G +P T+N +I C GKI +A +L + G + ++ +LI +
Sbjct: 383 ----MKLE-GFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEH 437
Query: 222 DQQ 224
+Q
Sbjct: 438 CKQ 440
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
EA++ + G++PD ++ A++ G C+ GR EA LL +G + T
Sbjct: 163 AREAFDGMARAAG-GVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTV 221
Query: 161 -------------LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+ L +R+ EMG P + ++ I LC G + +A +L M G
Sbjct: 222 VVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKG 281
Query: 207 KIPSRTSHDMLIKKL 221
P+ +H LI L
Sbjct: 282 LKPNVYTHTSLIDGL 296
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
GL P TYT+++ G+C++G+ A+++ ++ G +P +I
Sbjct: 492 GLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGC------------------LPDSI 533
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
T+ +I +LC ++ +A L M + +P
Sbjct: 534 TYGALISSLCKESRLEEARALFETMLDKHLVPC 566
>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 918
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 36/206 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV----------MLNE---------QD 89
+A ++ ++IF+ +++ G +V +N L++ LV +L++ +
Sbjct: 566 RAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEH 625
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + +G E+A++ ++N+GL+ DVYTY A++ CK GR A+ + E
Sbjct: 626 TYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEM 685
Query: 150 IERGVTQN----------------VVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKI 192
+ + +N V L+Q++ + G +P T+ + + A C G +
Sbjct: 686 SAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDM 745
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
KA ++ M G P+ ++ LI
Sbjct: 746 QKATEIIQEMEAFGIKPNLKTYTTLI 771
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA +++ ++ +G+ PD++TYT+ ++ CK G +A E++ E G+ N+ T
Sbjct: 708 GDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEAFGIKPNLKTY 767
Query: 162 IQLLQRLEMGHIP 174
L+ +P
Sbjct: 768 TTLINGWARASMP 780
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 101 VGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
VGR +EEA + +K +G++ + TY+ I+ GF K+G+++ A EA E+ + N V
Sbjct: 321 VGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNAV 380
Query: 160 TLIQ----------------LLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLM 202
T L++ +E+ I I ++ ++ +G K L++ +
Sbjct: 381 TYGSIIYAHCQTCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRL 440
Query: 203 YEHGKIPSRTSHDMLI 218
E G PS S+ LI
Sbjct: 441 KECGFSPSVISYGCLI 456
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ M+G E+ + +K G P V +Y +++ + K+G+ ++A+++ G+
Sbjct: 423 GYTMIGNEEKCLIVFDRLKECGFSPSVISYGCLINLYTKIGKVSKALQISKMMKMSGIKH 482
Query: 157 NVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
N+ T L+ + G P + +NN+I A CG+ + +A+ ++
Sbjct: 483 NMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMSNMDRAICMV 542
Query: 200 FLMYEHGKIPS 210
M + P+
Sbjct: 543 KQMQKERYRPT 553
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 34/163 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+F KDG V +N+++ A ++ D A+ M+ ++
Sbjct: 504 FSVFEDFTKDGLKPDVVLYNNIITAFCGMSNMDRAIC----------------MVKQMQK 547
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
+ +P T+ I+ GF + G A+E+ + +++R G IP
Sbjct: 548 ERYRPTTRTFLPIIHGFARAGEMRRALEIFD----------------MMRR--SGCIPTV 589
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T+N +I L K+ KA+ +L M G P+ ++ L++
Sbjct: 590 HTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQ 632
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 43/90 (47%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ + + G W +D + +L + T F + G +++A E++ ++ G
Sbjct: 700 LIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEAFG 759
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+KP++ TYT +++G+ + +A+ E
Sbjct: 760 IKPNLKTYTTLINGWARASMPEKALSCFEE 789
>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 24/140 (17%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + G V+ A E+ + G K DV+TY + G+CKVGR +A+ + +E
Sbjct: 292 TCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEM 351
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
GV +P +T+N++I LC G++ A ++ M+ G P
Sbjct: 352 CREGV------------------VPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTP 393
Query: 210 SRTSHDMLI------KKLDQ 223
+ +L+ K+LDQ
Sbjct: 394 DIVTCCILLDGLCKSKRLDQ 413
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ E + ++ + GL VY +T ++DG CK G EA E+ +E + RG N+VT
Sbjct: 233 VGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVT 292
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ E G T+N I C VG++ A+ + M
Sbjct: 293 CTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMC 352
Query: 204 EHGKIPSRTSHDMLIKKL 221
G +P+ +++ LI L
Sbjct: 353 REGVVPNIVTYNSLIDCL 370
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 81/195 (41%), Gaps = 37/195 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
K +++ + +F+ + ++G ++ +N L+ L E A + G
Sbjct: 337 KVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIV 396
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
R+++A + + GL PDV++YT ++ G C R EAM LL +
Sbjct: 397 TCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDM 456
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ + +P +T++ +I LC G+I A LL M+ G +P
Sbjct: 457 HLKNL------------------VPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLP 498
Query: 210 SRTSHDMLIKKLDQQ 224
++ +L+ L ++
Sbjct: 499 DTITYSILLDALWKK 513
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA +L ++ L P + TY+ ++DG C+ GR + A LLNE +G + +T
Sbjct: 445 RMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYS 504
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL Q ++ G P + + +I C +I +A+ L M+
Sbjct: 505 ILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMK 564
Query: 206 GKIPSRTSHDMLI 218
+P ++ +L
Sbjct: 565 NLVPDIVTYTILF 577
>gi|296081018|emb|CBI18522.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 58/111 (52%), Gaps = 17/111 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---V 158
G VE+A L +K DGLKP++ TYTAIM GFCK G+ +EA L G+ +
Sbjct: 207 GYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMY 266
Query: 159 VTLIQ-------------LLQRLE-MGHIPRTITFNNVIQALCGVGKIHKA 195
VTLI LL+ +E G P +T+N++I LC G+ +A
Sbjct: 267 VTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEA 317
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 41/179 (22%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------------- 96
+++ I +KKDG ++ + +++ + D A F
Sbjct: 209 VEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVT 268
Query: 97 ---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
G ++ + +L +++ G+ P + TY +I++G CK GR++EA E + +G
Sbjct: 269 LIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADE-----VSKG 323
Query: 154 VTQNVVTLIQLL----------------QRLEM-GHIPRTITFNNVIQALCGVGKIHKA 195
+ + VT LL +RLE G + N +I+AL VG + A
Sbjct: 324 IAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDA 382
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
LMVG +E+AY + L D TY +++G+C+V R EA+E+ +E + ++
Sbjct: 374 LMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDEFRKTSISSCY 433
Query: 159 VTLIQ 163
+ +Q
Sbjct: 434 LFFVQ 438
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 37/169 (21%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E +DL P + +D + K L + +F + G N +V +N L+
Sbjct: 556 EKIDLV--PSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLI------- 606
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
D KF G +EEA +L+++K +KPD +T +A+++G+C G A+
Sbjct: 607 --DGYCKF-------GNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFF 657
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
E ++ + +P + F +++ LC G++ +A
Sbjct: 658 FEFKKKDI------------------LPDFLGFMYLVRGLCAKGRMEEA 688
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 83/186 (44%), Gaps = 28/186 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTN-----WSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-- 101
+ S ++E ++IF+ +K + + F M + NE++T F ++
Sbjct: 410 RVSRIEEALEIFDEFRKTSISSCYLFFVQEGFFPGCMRSIHENEKETITVAFPVSVLKSL 469
Query: 102 ---GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
GR+ +AY++++ + + D+ Y+ ++D CK G ++A++L ++G+ N+
Sbjct: 470 KKNGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNI 529
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+N+VI LC G + +A L + + +PS ++ LI
Sbjct: 530 Y------------------AYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLI 571
Query: 219 KKLDQQ 224
L ++
Sbjct: 572 DSLCKE 577
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+F ++V + + EM+ G+ PD +YT ++DGF + G +A+ L + + G
Sbjct: 168 YFREGVLVEAIRKHKEMI----EKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDG 223
Query: 154 VTQNVVTLIQ-LLQRLEMGHIPRTIT----------------FNNVIQALCGVGKIHKAL 196
+ N+VT +L + G + T + +I C G I
Sbjct: 224 LKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVF 283
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
LL M + G PS +++ +I L
Sbjct: 284 GLLEDMEKRGISPSIVTYNSIINGL 308
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A ++ VK G+ ++Y Y ++++G C+ G +A L +
Sbjct: 508 GHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDS------------- 554
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L+++++ +P IT+ +I +LC G + A L M G P+ ++ LI
Sbjct: 555 ---LEKIDL--VPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLI 606
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA + +K G P+VYTYT ++D C+ G+ A ++ E ++ G N +T
Sbjct: 260 GNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITF 319
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL Q MG P T+T+N +I++ C G + +AL +L M +
Sbjct: 320 NNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVK 379
Query: 205 HGKIPSRTSHDMLI 218
G P+ ++ + L
Sbjct: 380 KGCSPNASTFNGLF 393
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 18/134 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
R EA ++K D +PDV YT ++ G+C+ G EA + E G NV T
Sbjct: 227 RATEAQSFFDSLK-DKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYT 285
Query: 161 -LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+I L R L++G P +ITFNN+++ G+ K L + M
Sbjct: 286 IVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRM 345
Query: 206 GKIPSRTSHDMLIK 219
G P +++ LI+
Sbjct: 346 GCPPDTVTYNFLIE 359
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H+ GR E+ ++ +K G PD TY +++ CK G +EA+++LN +++G + N
Sbjct: 326 HVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPN 385
Query: 158 VVTLIQLL 165
T L
Sbjct: 386 ASTFNGLF 393
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 36/173 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L E + + NS+ K G + + S FN L ++ L + + A + ++ N
Sbjct: 367 LDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANTVTYNI 426
Query: 99 LMVGRVE-EAYEMLMNVKN----DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
LM V+ ++ +M++ +K D ++P+V TY ++ +C +G N A + E +E
Sbjct: 427 LMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFREMVEEK 486
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+ P + V+Q L G++ K L+ +M + G
Sbjct: 487 CLK-----------------PSLPVYEKVLQQLRKAGQLKKHEELVAVMVDRG 522
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 29/189 (15%)
Query: 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----NHLMVGRVEEA 107
P E ID+ ++ W V D L+ + +++ FS ++ G EA
Sbjct: 144 PYNEMIDLAGKVRNFDLGWQVID-------LMKARNVEISIETFSILIRRYVRAGLASEA 196
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+++ KPD ++ ++ C+ R+ EA ++++ +V+ L++
Sbjct: 197 VHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFF-DSLKDKFEPDVIVYTNLVRG 255
Query: 168 L--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
EM G +P T+ VI ALC G+I +A + M + G P+
Sbjct: 256 WCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPN 315
Query: 211 RTSHDMLIK 219
+ + L++
Sbjct: 316 SITFNNLLR 324
>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 20/144 (13%)
Query: 101 VGRVEEAYEML--MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
G+V+ A+ ++ M K+ L P+V TYT ++ G+C EA+ LL E + RG+ N
Sbjct: 284 AGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNK 343
Query: 159 VTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+T L+Q L + G IP T T N +I+A C +GK+ +A +
Sbjct: 344 ITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFE 403
Query: 201 LMYEHGKIPSRTSHDMLIKKLDQQ 224
M E P ++ +L++ L Q+
Sbjct: 404 KMSELRVQPDSATYSVLVRSLCQR 427
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H +G++EEA+ + + ++PD TY+ ++ C+ G A E +E E+ +
Sbjct: 389 HCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEI--- 445
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
LL ++G P +N + + LC GK KA
Sbjct: 446 ------LLH--DVGCKPLVAAYNPMFEYLCSNGKTKKA 475
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVV 159
G +E+ ++ +K G+ P V T+ +++ K GR++ A +L +E ++ GVT +
Sbjct: 178 AGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTY 237
Query: 160 TLIQLLQRLEMGHI-----------------PRTITFNNVIQALCGVGKIHKA 195
T L++ M + P +T+N ++ LC GK+ A
Sbjct: 238 TFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIA 290
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 82 LVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141
+VMLN T ++ + R E YEM+ + G PDV+TY +M G CK+GR
Sbjct: 316 VVMLN---TVIRGCLAEGKLARATELYEMM---GSKGCPPDVHTYNILMHGLCKLGRCGS 369
Query: 142 AMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQ 184
A+ +L+E E+G N+VT LL Q G + +N +I
Sbjct: 370 AVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIY 429
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
AL GK+ +A+ L+ M G P +++ +I L
Sbjct: 430 ALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHL 466
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA ++ +K+ G KPD+ TY I+ C + +EA + +E GV N +T
Sbjct: 435 GKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITY 494
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G +++N +I+ALC G + ++++LL M
Sbjct: 495 NTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMT 554
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ S++MLI +L
Sbjct: 555 KGIKPNNFSYNMLINEL 571
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 37/191 (19%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------------FSNHLM 100
+E + + N + G V +N L+ AL D ++ FS +++
Sbjct: 508 QEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNML 567
Query: 101 V------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ G+V +A E+ + N GL PD+ TY +++G CKVG ++ A+ LL E+
Sbjct: 568 INELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLL----EKLP 623
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+NV H P +T+N +I C V + A +LL G +P+ +
Sbjct: 624 NENV-------------H-PDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTW 669
Query: 215 DMLIKKLDQQP 225
M+++ +QP
Sbjct: 670 GMMVQNFVRQP 680
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLL-------- 165
D + P +T+ C++GR+ +A+ LL G + V T+I L
Sbjct: 174 DRVPPTTFTFGVAARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAE 233
Query: 166 ------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ L MG TFN+V+ LCG+G + +A L+ M HG PS ++ L++
Sbjct: 234 AATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLR 293
Query: 220 KL 221
L
Sbjct: 294 GL 295
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 29/165 (17%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G V+ FND+++ L L G V EA ++ + G P V TY
Sbjct: 245 GCAADVNTFNDVVLGLCGL----------------GHVREAARLVDRMMMHGCTPSVVTY 288
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NVVT--------LIQLLQRLEM----GHI 173
++ G C+ +++EA +L E V N V L + + EM G
Sbjct: 289 GFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCP 348
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T+N ++ LC +G+ A+ +L M E G P+ ++ L+
Sbjct: 349 PDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLL 393
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA +L + G DV T+ ++ G C +G EA L++ + G T +VVT
Sbjct: 229 GGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTY 288
Query: 162 IQLLQRL-----------EMGHIPR--TITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
LL+ L +G +P + N VI+ GK+ +A L +M G
Sbjct: 289 GFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCP 348
Query: 209 PSRTSHDMLIKKL 221
P ++++L+ L
Sbjct: 349 PDVHTYNILMHGL 361
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 32/201 (15%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-----------VKFF----SN 97
++E + + + G V + LL L + + D A V F
Sbjct: 261 VREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGG 320
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
L G++ EA E+ + G +PD +TY+ +M G CK+GR A+ LL E ++G N
Sbjct: 321 CLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPN 380
Query: 158 VVTLIQLLQRL--------------EMGHIPRTIT---FNNVIQALCGVGKIHKALLLLF 200
VVT +L EM T+ +N +I ALC G++ +A+ L+
Sbjct: 381 VVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQ 440
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G P S++ +I L
Sbjct: 441 EMRSQGCNPDICSYNTIIYHL 461
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA ++ +++ G PD+ +Y I+ C + EA + +E GV N +T
Sbjct: 430 GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITY 489
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM G +++N +I+A+C G + ++L+LL M E
Sbjct: 490 NTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAE 549
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ S+++LI +L ++
Sbjct: 550 KGIKPNNVSYNILISELCKE 569
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR +EA +L + G PD Y ++ C G EA LLNE + G +V
Sbjct: 188 LGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVN- 246
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
TF++V++ +CG+G++ +A L+ M G +P ++ L++
Sbjct: 247 -----------------TFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQG 289
Query: 221 L 221
L
Sbjct: 290 L 290
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
K + E + + ++ G N + +N ++ L + + A F N
Sbjct: 427 CKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANG 486
Query: 98 -------HLMV--GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
H ++ GR ++A + + G DV +Y ++ CK G + ++ LL E
Sbjct: 487 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 546
Query: 149 AIERGVTQNVVT---LIQLL--------------QRLEMGHIPRTITFNNVIQALCGVGK 191
E+G+ N V+ LI L Q L G P +T+N +I LC +G
Sbjct: 547 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 606
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+H AL LL ++ P ++++LI
Sbjct: 607 MHAALNLLEKLHNENVHPDIITYNILI 633
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE------RGV 154
+GRV EA ++ + G P V TY ++ G C+V +++EA +L E V
Sbjct: 258 LGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTV 317
Query: 155 TQNVVTLIQLLQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ +L + E+ G P T++ ++ LC +G+I A+ LL M + G
Sbjct: 318 IGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGF 377
Query: 208 IPSRTSHDMLI 218
P+ ++ +++
Sbjct: 378 APNVVTYTIVL 388
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 16/97 (16%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV +A E+ + N GL PD+ TY +++G CK+G + A+ LL + V +++T
Sbjct: 571 RVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYN 630
Query: 162 --------IQLLQRLEMGHIPRTITFNNVIQALCGVG 190
++LL M N + A+C VG
Sbjct: 631 ILISWHCKVRLLDDAAM-------LLNRAMAAVCPVG 660
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN----EQDTAVKF----FSNHLM 100
+A L+E + + +++ G ++ +N L+ AL L+ QD K F+ ++M
Sbjct: 69 RAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVM 128
Query: 101 V-----------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G V++A ++L + G++P+V TY+A++DG CK + EA E+L E
Sbjct: 129 TFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEM 188
Query: 150 IERGVTQNVVT---LI-------------QLLQRLE-MGHIPRTITFNNVIQALCGVGKI 192
GVT + T LI Q+L+R+ G P + ++++I A C GK+
Sbjct: 189 KASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKL 248
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A L M + K P +++ +I L
Sbjct: 249 LEAQKTLQEMRKQRKSPDVVTYNTVIDGL 277
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 17/126 (13%)
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQRLE 169
++++ G P+V TYTA++ F + + EAM+LL E ERG N+VT L+ L +L
Sbjct: 47 HLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLS 106
Query: 170 M--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
M G P +TFN+++ C G + A LL +M G P+ ++
Sbjct: 107 MVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYS 166
Query: 216 MLIKKL 221
LI L
Sbjct: 167 ALIDGL 172
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVT 160
G++ EA + L ++ PDV TY ++DG CK+G+ EA +L++ E G V +VVT
Sbjct: 246 GKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVT 305
Query: 161 -------------LIQ---LLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L++ LL R+ + G P +T+ +I LC G++ +A LL M
Sbjct: 306 YSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMK 365
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P+ ++ LI L
Sbjct: 366 RAGCAPNVVTYTTLISGL 383
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
EA ++L + G PDV TYT I+DG CK GR EA LL G NVVT L+
Sbjct: 321 EAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLI 380
Query: 166 QRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKA 195
L EM G P +T+N ++ LC G+I +A
Sbjct: 381 SGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEA 427
>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
macrophylla]
Length = 431
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N V L+
Sbjct: 208 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + + L+ M G P + ++ LI
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLI 324
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++ + ++ + GLKPD TYT ++DG CK G + A E + I+ + + V
Sbjct: 296 GDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + K LL M
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 416 DGHVPSVVTYNVLM 429
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 143 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 202
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P + F +I C G+
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGR 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 295
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 20/173 (11%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+++D DL M +V Q + + H G + EA + ++ +DGL P TYT
Sbjct: 533 NLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYT 592
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR--------------LEM 170
+ +C+ G A + +E GV N +T LI L R LE
Sbjct: 593 VFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLER 652
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
G +P T+ +I C G A+ F M+++G P +H L K D+
Sbjct: 653 GLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKGFDE 705
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 17/145 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + G ++EA + ++++ GL P V TY ++DG+C++G EA L E +E+G
Sbjct: 384 LLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQG 443
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+V T L+ + L G P +N I+A +G I KA
Sbjct: 444 CLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAF 503
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L +M G ++++LI L
Sbjct: 504 RLREVMMLEGISSDTVTYNILIDGL 528
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L +G + +A+ + + +G+ D TY ++DG CK G N+A +L + + G+ +
Sbjct: 494 LTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDC 553
Query: 159 VTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
+T L+ + G P +T+ I A C G ++ A
Sbjct: 554 ITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRK 613
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M E G P+ ++++LI L
Sbjct: 614 MLEEGVEPNEITYNVLIHAL 633
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR + AY + GL P+ YTYT ++DG CK G +AM E + G+ + +T
Sbjct: 636 TGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLT 695
Query: 161 LIQLLQRLEMGHIPRTITF 179
L + + GH+ I +
Sbjct: 696 HKALFKGFDEGHMNHAIEY 714
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L G V++A ++ + ++N+G+ P V TY A++ G + G+ A
Sbjct: 319 LAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQ--------------- 363
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ ++ MG P IT+N+++ C G + +ALLL + G P+ ++++LI
Sbjct: 364 ---VKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILI 420
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 18/124 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-------VTQNVVTL--------- 161
G++P + TY ++D F K GR+++ LL E RG VT NVV
Sbjct: 232 GIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLE 291
Query: 162 --IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
++++ + + + T+N +I L G + KA L M G +P+ +++ +I
Sbjct: 292 EAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIH 351
Query: 220 KLDQ 223
L Q
Sbjct: 352 GLLQ 355
>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+EA + L + G + D Y+AI+D +CK GR ++A E++NE RG
Sbjct: 275 DEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGC---------- 324
Query: 165 LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
IP +T+ +I G++ +A +L MY+HG P+ S+ +K L Q+
Sbjct: 325 --------IPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQK 376
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 17/111 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +A +ML + G KP+ +YTA + G C+ G S+EA E++ + E+ T N +T
Sbjct: 342 GEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITY 401
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKA 195
++ EM G P + N ++Q+LC +G++ +A
Sbjct: 402 SVVMHGFRREGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEA 452
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+++A E++ + G PDV TYTAI++GF + G +A ++L + + G N V+
Sbjct: 307 GRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSY 366
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E P IT++ V+ GK+ A ++ M
Sbjct: 367 TAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIG 426
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ ++L++ L
Sbjct: 427 KGFFPTPVEINLLLQSL 443
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 39/206 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
+ L + D+ + G + + N LL +L + D A KF L +G
Sbjct: 410 REGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAV 469
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+E A +L ++ PD TYT I+D K GR EA EL +
Sbjct: 470 NFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATELTLKM 529
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRT-----------------ITFNNVIQALCGVGKI 192
+++G+ VT ++ R G I R FN VI+ LC G +
Sbjct: 530 LKKGIDPTPVTYRTVIHRY--GQIGRVEDLLNLLDKMLTRQECRTAFNQVIEKLCTFGNL 587
Query: 193 HKA-LLLLFLMYEHGKIPSRTSHDML 217
A LL ++ +I + T H ++
Sbjct: 588 EAADKLLGKVLRTASRIDANTCHVLM 613
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ +A +++ + G P ++ C++GR +EA + + E + G N V
Sbjct: 412 GKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNF 471
Query: 162 IQLLQR------------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ R L H P +T+ +I AL G+I +A L M
Sbjct: 472 TTVIHRFCQQDDIEAALSLLDDMYLSNKH-PDAVTYTTIIDALGKKGRIEEATELTLKML 530
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
+ G P+ ++ +I + Q
Sbjct: 531 KKGIDPTPVTYRTVIHRYGQ 550
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 33/168 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L+ + + ++K G ++ N + LVM N + A++F E
Sbjct: 130 RAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFL----------ERM 179
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-------- 160
++L G+ P+V TY ++ G+C + R +AMEL++E +G + + V+
Sbjct: 180 QLL------GIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFL 233
Query: 161 --------LIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLL 199
++ +++++E + +T+N +I LC +AL L
Sbjct: 234 CKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFL 281
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 33/172 (19%)
Query: 65 KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
K G SVS +N L+ AL M GR+ EA +M+ ++ G+ PD
Sbjct: 306 KKGIMPSVSTYNLLVHAL----------------FMEGRMGEADDMIKEMRKKGIIPDAI 349
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR-------------- 167
TY +++G+ + G + A +L NE + +G+ VT LI +L R
Sbjct: 350 TYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKI 409
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
L+ G P I FN +I C G + +A +LL M P + + L++
Sbjct: 410 LDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQ 461
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A +L ++ G++PD YTY +++ G CK GR EA L ++ +E
Sbjct: 222 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVE---------- 271
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+G +P +T+N +I C G + +A M + G +PS +++++L+ L
Sbjct: 272 --------IGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 323
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+KE D+F I G + V FN ++ H G VE A+ +L
Sbjct: 399 MKEADDLFEKILDQGVSPDVIMFNAMI----------------DGHCANGNVERAFMLLK 442
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQR-- 167
+ + PD T+ +M G C+ G+ EA LL+E RG+ + + TLI R
Sbjct: 443 EMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRG 502
Query: 168 ------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
L +G P +T+N +I+ LC + A LL M G P +++
Sbjct: 503 DIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYL 562
Query: 216 MLIKKL 221
LI+ +
Sbjct: 563 SLIEGM 568
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 34/222 (15%)
Query: 18 DSPSRSPSAAESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFN 76
DS + E LD + +P + + + K + + +++ ++ K+G + +N
Sbjct: 211 DSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYN 270
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
+L + A+ F L +++DG++PDV TY ++MD CK
Sbjct: 271 SILHGYCSSEQPKEAIGF----------------LKKMRSDGVEPDVVTYNSLMDYLCKN 314
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQR-------LEM----------GHIPRTITF 179
GRS EA ++ + +RG+ ++ T LLQ +EM G P F
Sbjct: 315 GRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVF 374
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
N +I A K+ +A+L+ M +HG P+ ++ +I L
Sbjct: 375 NILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGIL 416
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 59 IFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
FNSI K+G DL++ + + T + + G+++EA ++L ++
Sbjct: 478 FFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
+ G+KPD TY +++G+C+V R ++A+ L E + GV+ N++T +LQ L H
Sbjct: 538 FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF--HTR 595
Query: 175 RT 176
RT
Sbjct: 596 RT 597
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V+EA + ++ GL P+V TY A++ CK G ++AM + I+ G+T N++
Sbjct: 386 KVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYT 445
Query: 163 QL-----------------LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L L+ L+ G TI FN++I + C G++ ++ L LM
Sbjct: 446 SLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRI 505
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ LI
Sbjct: 506 GVKPNVITYSTLI 518
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 37/192 (19%)
Query: 48 IKASPLKERID----IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
I A +E++D +F+ +++ G N +V + ++ L D A+ +F +
Sbjct: 378 ICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMI---- 433
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++GL P++ YT+++ C + ++A EL+ E ++RG+ N +
Sbjct: 434 ------------DEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNS 481
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ + +G P IT++ +I C GK+ +A LL M+ G
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG 541
Query: 207 KIPSRTSHDMLI 218
P +++ LI
Sbjct: 542 MKPDCVTYNTLI 553
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 20/139 (14%)
Query: 103 RVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
R +EA E+L + +D G PDV +YT +++GF K G S++A +E ++R ++ +VV
Sbjct: 173 RSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVV 232
Query: 160 TLIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ L G +P +T+N+++ C + +A+ L M
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM 292
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 293 RSDGVEPDVVTYNSLMDYL 311
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++AY + + + PDV TY++I+ CK ++AME+L ++ GV N +T
Sbjct: 210 GDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTY 269
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L+++ G P +T+N+++ LC G+ +A + M +
Sbjct: 270 NSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTK 329
Query: 205 HGKIPSRTSHDMLIK 219
G P ++ L++
Sbjct: 330 RGLEPDIATYCTLLQ 344
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 26/149 (17%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------- 98
+++ I K GT +S +N +L L N D A++ F N
Sbjct: 602 ELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 661
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT--Q 156
L VGR +EA ++ + ++GL P+ +TY + + G E +L + G T
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDS 721
Query: 157 NVVTLI--QLLQRLEMGHIPRTITFNNVI 183
++ I +LLQR G I R T+ ++I
Sbjct: 722 GMLNFIVRELLQR---GEITRAGTYLSMI 747
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ + L NV G + + T+T ++ G C R+++AM++
Sbjct: 101 GRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI---------------- 144
Query: 162 IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH---GKIPSRTSHDML 217
+L+R+ E+ +P + +++ LC + +AL LL +M + G P S+ +
Sbjct: 145 --VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202
Query: 218 I 218
I
Sbjct: 203 I 203
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 41/222 (18%)
Query: 44 FVDKIKASPLKE-RI----DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98
F + I S KE R+ +F+ + + G +V ++ L+ + + D A K S+
Sbjct: 478 FFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537
Query: 99 LMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
VG R+++A + + + G+ P++ TY I+ G R+
Sbjct: 538 FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRT 597
Query: 140 NEAMELL--------------NEAIERGVTQNVVT--LIQLLQRLEMGHIP-RTITFNNV 182
A EL I G+ +N +T +++ Q L + + T TFN +
Sbjct: 598 AAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 657
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
I AL VG+ +A L +G +P+ ++ ++ + + Q
Sbjct: 658 IGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQ 699
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA ++ + + LKPD Y+Y ++DG+C+ G ++EA L ++ ++ G+
Sbjct: 381 GEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE------ 434
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +++ LC VG AL + LM + G P + L+ L
Sbjct: 435 ------------PTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGL 482
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V++A + G PD +TY ++ G+ G +EA L +E + RG+ N+VT
Sbjct: 728 GKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTY 787
Query: 162 IQLL------------QRL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ QRL + G P +T+N +I C +G + A L M E
Sbjct: 788 NALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIE 847
Query: 205 HGKIPSRTSHDMLIKKL 221
G PS ++ LI L
Sbjct: 848 EGISPSVVTYSALINGL 864
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + G V+EA+ + + GL P++ TY A+++G CK + A L ++
Sbjct: 751 TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 810
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
++G+ NVVT L+ + +E G P +T++ +I LC G I
Sbjct: 811 HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDI 870
Query: 193 HKALLLLFLMYEHG 206
+++ LL M + G
Sbjct: 871 ERSMKLLNQMIKAG 884
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 37/183 (20%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----------- 102
K + +F+++ K G S+ N LL LV E TA + + VG
Sbjct: 173 KNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIM 232
Query: 103 --------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+V+EA + ++N G++P++ TY ++++G+ +G A +L E+GV
Sbjct: 233 VNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGV 292
Query: 155 TQNVVTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
++NVVT L++ E +P + +I C GKI A+
Sbjct: 293 SRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAV 352
Query: 197 LLL 199
LL
Sbjct: 353 RLL 355
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 38/190 (20%)
Query: 31 DLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
DL +P + + +D KAS + + + +++++ + S+ +N L+ L
Sbjct: 535 DLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGL------- 587
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
F S L+ E ++L + GL P++ TY A++DG+CK G ++A E
Sbjct: 588 ----FKSRRLV-----EVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEM 638
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
E G++ N+ I + ++ L +G+I +A LL+ M +HG P
Sbjct: 639 TENGLSANI------------------IICSTMVSGLYRLGRIDEANLLMQKMVDHGFFP 680
Query: 210 SRTSHDMLIK 219
H+ +K
Sbjct: 681 ---DHECFLK 687
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ +G ++ A+++ + +G+ P V TY+A+++G CK G +M+LLN+ I+ GV
Sbjct: 828 GYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDS 887
Query: 157 NVVTLIQLLQ 166
++ L+Q
Sbjct: 888 KLIEYCTLVQ 897
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 66/137 (48%), Gaps = 18/137 (13%)
Query: 103 RVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
+++EA ++L ++ + L PD Y ++DG+C+ G+ ++A+ LL+E + G+ N+
Sbjct: 311 KMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFIC 370
Query: 162 IQLLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + G I P + ++N ++ C G +A L M +
Sbjct: 371 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ 430
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ L+K L
Sbjct: 431 EGIEPTVLTYNTLLKGL 447
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-------- 152
+G++ EA E+ +K+ G PD TY ++DG+CK +A + + A+ER
Sbjct: 520 MGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFK-VKGAMEREPISPSIE 578
Query: 153 -------GV--TQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
G+ ++ +V + LL + + G P +T+ +I C G + KA F M
Sbjct: 579 MYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEM 638
Query: 203 YEHG 206
E+G
Sbjct: 639 TENG 642
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 35/190 (18%)
Query: 30 LDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
+D P S +D + E ++ + + ++G +V +N LL L +
Sbjct: 394 VDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAF 453
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
D A++ + HLM+ R G+ PD Y+ ++DG K+ A L +
Sbjct: 454 DDALQIW--HLMMKR--------------GVAPDEVGYSTLLDGLFKMENFEGASTLWKD 497
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ RG T++ ITFN +I LC +GK+ +A + M + G
Sbjct: 498 ILARGFTKS------------------RITFNTMISGLCKMGKMVEAEEIFDKMKDLGCS 539
Query: 209 PSRTSHDMLI 218
P ++ LI
Sbjct: 540 PDGITYRTLI 549
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 29/182 (15%)
Query: 59 IFNSIKKDG-TNWSVSDFNDLLMA-----LVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ N + +DG + +++ FN+ + LV+ N T VK S G + +A +++
Sbjct: 361 LINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCN---TLVKGLSQQ---GLILQALKLMN 414
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------- 161
+ +G PD++TY +++G CK+G ++A L+ +AI +G +V T
Sbjct: 415 EMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKL 474
Query: 162 -----IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
I+++ R+ G P IT+N+++ LC GK + LM E G +P+ +++
Sbjct: 475 KLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYN 534
Query: 216 ML 217
+L
Sbjct: 535 IL 536
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 50/187 (26%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA ++E +++ ++ G V +F L+ + D A + F RV+E Y
Sbjct: 542 KARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFK------RVDEQY 595
Query: 109 -------------------------EMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
E L N + +G PD YTY ++DGFCK G N
Sbjct: 596 KFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSG 655
Query: 143 MELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
LL ++E G IP TF V+ LC ++H+A+ ++ LM
Sbjct: 656 YSF------------------LLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLM 697
Query: 203 YEHGKIP 209
G +P
Sbjct: 698 VHKGIVP 704
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ ++E +D+F + SV +N ++ LV ++F ++A+
Sbjct: 88 RKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILV-------EYRYF---------DQAH 131
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
++ M +++ G+ PDVYT+T M FC+ R + A LLN +G + V ++
Sbjct: 132 KVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGF 191
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ L +G P + FN +I LC G + ++ LL + + G P+
Sbjct: 192 YEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNL 251
Query: 212 TSHDMLIKKLDQQ 224
+ ++ I+ Q+
Sbjct: 252 FTVNIFIQGFCQR 264
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V EA L + N+G +PD +TY +I+DG+CK+G A ++L + +G + T
Sbjct: 300 KVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYC 359
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + +E G P + N +++ L G I +AL L+ M E+
Sbjct: 360 SLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSEN 419
Query: 206 GKIPSRTSHDMLIKKL 221
G P +++++I L
Sbjct: 420 GCSPDIWTYNLVINGL 435
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 17/138 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ +G ++ A ++L + G PD TY ++++G C+ G + A+ + NEA+E+G+ N
Sbjct: 330 YCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPN 389
Query: 158 VV---TLIQ-------LLQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+V TL++ +LQ L++ G P T+N VI LC +G + A L+
Sbjct: 390 LVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVI 449
Query: 201 LMYEHGKIPSRTSHDMLI 218
G +P + + LI
Sbjct: 450 DAIAKGHLPDVFTFNTLI 467
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 18/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+E+ +L V G+ P+++T + GFC+ NEA+ LL + + RG+T +V+T
Sbjct: 230 GHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLL-DGVGRGLTPDVITY 288
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + + G+ P T+N++I C +G + A +L
Sbjct: 289 NTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAF 348
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G +P +++ LI L Q
Sbjct: 349 KGFVPDESTYCSLINGLCQ 367
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+++ A E++ + N G+ PDV TY +I++G CK G+ + M +E+G
Sbjct: 475 KLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGC-------- 526
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+P IT+N + ++ C K+ +AL L+ M G P + L+K
Sbjct: 527 ----------VPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMK 573
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ E+ + G P++ TY + + FCK + EA+ L+ E +G+T +VV
Sbjct: 509 GKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNF 568
Query: 162 ----------------IQLLQRL-EMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMY 203
QL +R+ E TI T+N +I A G ++ A L M
Sbjct: 569 GTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMC 628
Query: 204 EHGKIPSRTSHDMLI 218
E+G P ++ ++I
Sbjct: 629 ENGFSPDSYTYRVMI 643
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA ++ + + LKPD Y+Y ++DG+C+ G ++EA L ++ ++ G+
Sbjct: 347 GEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE------ 400
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +++ LC VG AL + LM + G P + L+ L
Sbjct: 401 ------------PTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGL 448
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V++A + G PD +TY ++ G+ G +EA L +E + RG+ N+VT
Sbjct: 694 GKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTY 753
Query: 162 IQLL------------QRL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ QRL + G P +T+N +I C +G + A L M E
Sbjct: 754 NALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIE 813
Query: 205 HGKIPS 210
G PS
Sbjct: 814 EGISPS 819
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 44/193 (22%)
Query: 31 DLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
DL +P + + +D KAS + + + +++++ + S+ +N L+ L
Sbjct: 501 DLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGL------- 553
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
F S L+ E ++L + GL P++ TY A++DG+CK G ++A E
Sbjct: 554 ----FKSRRLV-----EVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEM 604
Query: 150 IERGVTQNVV---TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
E G++ N++ T++ L RL G+I +A LL+ M +HG
Sbjct: 605 TENGLSANIIICSTMVSGLYRL---------------------GRIDEANLLMQKMVDHG 643
Query: 207 KIPSRTSHDMLIK 219
P H+ +K
Sbjct: 644 FFP---DHECFLK 653
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 37/183 (20%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----------- 102
K + +F+++ K G S+ N LL LV E TA + + VG
Sbjct: 139 KNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIM 198
Query: 103 --------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+V+EA + ++N G++P++ TY ++++G+ +G A +L E+GV
Sbjct: 199 VNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGV 258
Query: 155 TQNVVTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
++NVVT L++ E +P + +I C GKI A+
Sbjct: 259 SRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAV 318
Query: 197 LLL 199
LL
Sbjct: 319 RLL 321
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 66/137 (48%), Gaps = 18/137 (13%)
Query: 103 RVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
+++EA ++L ++ + L PD Y ++DG+C+ G+ ++A+ LL+E + G+ N+
Sbjct: 277 KMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFIC 336
Query: 162 IQLLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + G I P + ++N ++ C G +A L M +
Sbjct: 337 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ 396
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ L+K L
Sbjct: 397 EGIEPTVLTYNTLLKGL 413
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-------- 152
+G++ EA E+ +K+ G PD TY ++DG+CK +A + + A+ER
Sbjct: 486 MGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFK-VKGAMEREPISPSIE 544
Query: 153 -------GV--TQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
G+ ++ +V + LL + + G P +T+ +I C G + KA F M
Sbjct: 545 MYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEM 604
Query: 203 YEHG 206
E+G
Sbjct: 605 TENG 608
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV-VTLI 162
V+ A + + GL P+V TY ++DG+CK+G + A +L ++ IE G++ ++ L+
Sbjct: 766 VDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSIQCNLL 825
Query: 163 QLLQRLEMGHIPRT 176
+ + +G +P++
Sbjct: 826 ESVSMWLVGILPKS 839
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 35/190 (18%)
Query: 30 LDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
+D P S +D + E ++ + + ++G +V +N LL L +
Sbjct: 360 VDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAF 419
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
D A++ + HLM+ R G+ PD Y+ ++DG K+ A L +
Sbjct: 420 DDALQIW--HLMMKR--------------GVAPDEVGYSTLLDGLFKMENFEGASTLWKD 463
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ RG T++ ITFN +I LC +GK+ +A + M + G
Sbjct: 464 ILARGFTKS------------------RITFNTMISGLCKMGKMVEAEEIFDKMKDLGCS 505
Query: 209 PSRTSHDMLI 218
P ++ LI
Sbjct: 506 PDGITYRTLI 515
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
L P+ Y + G CK G+ ++A + +G + T L+
Sbjct: 676 LLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAF 735
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L G +P +T+N +I LC + +A L +++ G P+ +++ LI
Sbjct: 736 RLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLI 792
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 85/196 (43%), Gaps = 33/196 (16%)
Query: 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE 105
D + ++E +++F + SV +N ++ LV G
Sbjct: 85 DYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEY----------------GYFS 128
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A+++ M +K+ G+ PDVYT+T M FC GR A+ LLN +G N V+ ++
Sbjct: 129 QAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVI 188
Query: 166 -----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L+ G P +TFN +I LC G + ++ L + + G
Sbjct: 189 SGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVC 248
Query: 209 PSRTSHDMLIKKLDQQ 224
P+ + ++ I+ L ++
Sbjct: 249 PNLFTFNIFIQGLCRK 264
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 20/150 (13%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T VK S G V +A +++ ++ G PD++TY +++G CK+G ++A +LN+
Sbjct: 395 NTLVKGLSKQ---GLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILND 451
Query: 149 AIERGVTQNVVTLIQLL-----QR------------LEMGHIPRTITFNNVIQALCGVGK 191
AI +G ++ T L+ QR L G P IT+N ++ LC K
Sbjct: 452 AIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARK 511
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + M E G P+ ++++LI+
Sbjct: 512 LDNVVDTFKAMLEKGCTPNIITYNILIESF 541
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G ++EA +L ++ ++GL PDV +Y ++ GFCK + EA L++ + GV N
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTY 324
Query: 160 -TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T+I + M G IP T++++I LC G +++A+ + + E
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAME 384
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G S ++ L+K L +Q
Sbjct: 385 KGFKHSIILYNTLVKGLSKQ 404
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+ GR A +L N+ G + + +Y A++ GF K EA L +E +++G+ +++
Sbjct: 158 ITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDIL 217
Query: 160 TLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T +L+ L + G P TFN IQ LC G I +A LL +
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESI 277
Query: 203 YEHGKIPSRTSHDMLI 218
G P S++ LI
Sbjct: 278 VSEGLTPDVISYNTLI 293
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 34/165 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + + I+I +++ G V +N LL L + D V F L
Sbjct: 473 KQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAML--------- 523
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
G P++ TY +++ FCK + +EAMEL E RG+T ++VTL L
Sbjct: 524 -------EKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTL---- 572
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
I LC G++ KA L + + K T+
Sbjct: 573 --------------ICGLCSNGELDKAYELFVTIEKEYKFSYSTA 603
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 38/185 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
K + E +++F +K G + L+ L E D A + F
Sbjct: 543 KDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYST 602
Query: 98 ---HLMVGRVEE------AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++M+ E A ++ + PD YTY ++D +CK G + A L E
Sbjct: 603 AIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLE 662
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
I +G+ +P T V+ LC ++ +A++++ LM ++G +
Sbjct: 663 NISKGL------------------VPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIV 704
Query: 209 PSRTS 213
P +
Sbjct: 705 PEEVN 709
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A + G K + Y ++ G K G +A++L+ + +E G + ++ T
Sbjct: 370 GDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTY 429
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L G IP TFN +I C + KA+ +L M
Sbjct: 430 NLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLS 489
Query: 205 HGKIPSRTSHDMLIKKL 221
HG P +++ L+ L
Sbjct: 490 HGITPDVITYNTLLNGL 506
>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Brachypodium distachyon]
Length = 524
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F M GR EA+ ++ + GL PD +TY +++G+CK G+ +AM++ + +G
Sbjct: 260 FVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKG 319
Query: 154 VTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKAL 196
+ VVT L+ L M G P +N +I + C G + +A
Sbjct: 320 IRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAF 379
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
++ M + P +++ L++ L
Sbjct: 380 EIMGEMEKKRITPDDVTYNTLMRGL 404
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 36/207 (17%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVM---LNEQDT----AVK------------F 94
K+ + +F + G +V + L+ AL M + E D AV+
Sbjct: 306 KKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNAL 365
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
++H G ++ A+E++ ++ + PD TY +M G C +GR +EA L+ E +RG+
Sbjct: 366 INSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGI 425
Query: 155 TQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALL 197
++V+ L+ M G P +T+N +I+ LC G+ A
Sbjct: 426 QPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAED 485
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L+ M +G P +++ LI+ L +
Sbjct: 486 LVKEMVGNGITPDDSTYISLIEGLTTE 512
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMEL 145
++ T S VG+VE+A ++ + +G ++P+ Y A++ G+C G A+
Sbjct: 182 DKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRY 241
Query: 146 LNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCG 188
E ++RGV+ V T + L E G P T+N +I C
Sbjct: 242 RGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCK 301
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
GK KA+ + +M G + ++ LI L +
Sbjct: 302 EGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMK 337
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 102 GRVEEAYEMLMNVK-NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV+ E++ ++ G+ PD YTY ++ G+CKVG+ +A ++ +E + G +
Sbjct: 161 GRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVE---- 216
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P + +N +I C G + AL M + G + ++++ +
Sbjct: 217 -------------PNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHT 263
Query: 221 L 221
L
Sbjct: 264 L 264
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
P+ TY ++ GFC GR +E++ E ERG G P T+
Sbjct: 145 PNAVTYNTVIAGFCARGRVQAGIEIMREMRERG-----------------GIAPDKYTYA 187
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTSHDMLIKKLDQQ 224
VI C VGK+ A + M GK+ P+ ++ LI Q
Sbjct: 188 TVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQ 232
>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
Length = 814
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A E+ ++ G PDV Y +++GFCKV R +EA ++L+E + +G+ +VVT
Sbjct: 573 VDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNL 632
Query: 164 LLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ + G I P IT+ +I LC G+ A+ L M G
Sbjct: 633 LIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKG 692
Query: 207 KIPSRTSHDMLIKKL 221
P+R S LI L
Sbjct: 693 CSPNRISFIALIHGL 707
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R EA L + +G PD+ Y+A +DGF K+ ++A+E+ + R
Sbjct: 537 RSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICAR---------- 586
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G+ P + +N +I C V ++ +A +L M G +PS ++++LI
Sbjct: 587 --------GYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 634
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ L + +P+V TYT ++DG C GR ++A+ L NE +G + N ++
Sbjct: 641 GDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISF 700
Query: 162 IQLLQRL--------------EMG--HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
I L+ L EMG P TI + +I + A +L M
Sbjct: 701 IALIHGLCKCGWPDAALLYFREMGERETPDTIVYVALITSFISNKNPTLAFEILKEMVAK 760
Query: 206 GKIP 209
GK P
Sbjct: 761 GKFP 764
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 34/162 (20%)
Query: 97 NHLMVGR-VEEAYEMLMNVKNDG----------------LKPDVYTYTAIMDGFCKVGRS 139
N L+ G+ V++AY +L + D ++P +++ ++DG C G+
Sbjct: 374 NGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKL 433
Query: 140 NEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNV 182
+ A+ L + + G QNV+ L+ +L EM G P T N++
Sbjct: 434 DLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSI 493
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LC + AL ++ M HG P + +L+K+L ++
Sbjct: 494 FGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKR 535
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVTLI------- 162
L + + G +PD YT T+++ +C + ++A+ + NE RG V +V++++
Sbjct: 182 LKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKC 241
Query: 163 -------QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+L++R+E +G TF +I ++ KAL L M + G P + +
Sbjct: 242 GEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVY 301
Query: 215 DMLIKKL 221
D LI L
Sbjct: 302 DALIGGL 308
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Query: 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
+ LNE+ V + RV++A ++ ++ G PDV Y A++ G C +A
Sbjct: 259 IRLNEKTFCV-LIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKA 317
Query: 143 MELLNEAIERGVTQNVVTLIQLL--------------QRLE-MGHIPRTITFNNVIQALC 187
+ LL+E E G+ ++ L +L+ +RLE + + +N+V+ L
Sbjct: 318 LHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLV 377
Query: 188 GVGKIHKALLLLFLM 202
+ KA LL M
Sbjct: 378 NGKSVDKAYYLLXAM 392
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G V++A+E++ +++ G++ + T+ ++ GF + R ++A++L + + G
Sbjct: 241 CGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFA----- 295
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
P ++ +I LC +I KAL LL M E G P
Sbjct: 296 -------------PDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDP 331
>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA ++L + GL PD+YTY AI+ G CK G +E +L+ E RG
Sbjct: 221 GGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAEMFSRGCE------ 274
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T++ +I +LC G+I +A+ +L +M E P S+D LI L
Sbjct: 275 ------------PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISAL 322
Query: 222 DQQ 224
++
Sbjct: 323 CKE 325
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----L 161
E +M + +PDV+ Y A++ GFCKV R A ++LN RG ++VT +
Sbjct: 120 EKASRVMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMI 179
Query: 162 IQLLQRLEMG-------------HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
L R ++G +P IT+ +I+A G I++A+ LL M G +
Sbjct: 180 GSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLL 239
Query: 209 PSRTSHDMLIKKLDQQ 224
P +++ +I+ + ++
Sbjct: 240 PDMYTYNAIIRGMCKE 255
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S V R+E A ++L +K G PD+ TY ++ C + A+++L++ +
Sbjct: 145 SGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCM 204
Query: 156 QNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
V+T L++ L G +P T+N +I+ +C G + L
Sbjct: 205 PTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMWDEGEKL 264
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
+ M+ G P++ ++ +LI L
Sbjct: 265 VAEMFSRGCEPNKVTYSILISSL 287
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR----------------LEMGHIPRTI 177
CK G+ NE++ L + +G T +V+ +L++ LE P
Sbjct: 79 CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVF 138
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N VI C V +I A +L M G +P +++++I L
Sbjct: 139 AYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSL 182
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
GR++ A ++ + ++G PD+ Y I+ CK G +N+A+E+ N+ G N
Sbjct: 326 GRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPN 381
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 34/163 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
IFN+I + G N ++ ++ ++ + + D A+ F EM N
Sbjct: 339 IFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFK------------EMHCN----N 382
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
+ PDV TY +++DG CK+G+ + A++L++E +RGV + IT
Sbjct: 383 IIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHD------------------KIT 424
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N+++ ALC ++ KA+ LL M + G P ++ L+ L
Sbjct: 425 YNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGL 467
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 23/146 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V V EA+++ + + G+ PDV TY A++ GFC VG+ +A +L N+ I + NV T
Sbjct: 225 VKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYT 284
Query: 161 LIQLL------QRL-----------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ +RL + G P T+N+++ C V +++KA + +
Sbjct: 285 FNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTIS 344
Query: 204 EHGKIPSRTSHDML------IKKLDQ 223
+ G P+ S+ ++ IKK+D+
Sbjct: 345 QRGVNPNIHSYSIMIHGFCKIKKVDE 370
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A +L +K++G++PD+ TYT ++DG CK GR +A + + + +
Sbjct: 437 QVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVK---------- 486
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G+I + +IQ C G ++L LL M E+G IP+ +++++I L
Sbjct: 487 --------GYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSL 537
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 34/204 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P + +D + K + E D+++ + G + V +N L+
Sbjct: 210 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALI--------------- 254
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
S +VG++++A ++ + + + P+VYT+ ++DGFCK R EA +L +++G+
Sbjct: 255 -SGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGI 313
Query: 155 TQNVVTLIQLLQRL-------EMGHIPRTI----------TFNNVIQALCGVGKIHKALL 197
+V T L+ R + HI TI +++ +I C + K+ +A+
Sbjct: 314 KPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMN 373
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
L M+ + IP +++ LI L
Sbjct: 374 LFKEMHCNNIIPDVVTYNSLIDGL 397
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ A ++L V ++P+V Y I+D CKV NEA +L +E + +G++ +VVT
Sbjct: 190 VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVT 249
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L ++ +I P TFN ++ C ++ +A +L +M
Sbjct: 250 YNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMM 309
Query: 204 EHGKIPSRTSHDMLIKK 220
+ G P +++ L+ +
Sbjct: 310 KQGIKPDVFTYNSLMDR 326
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 23/162 (14%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
+FN + LV+L+ + FS +G+ ++ +L + G +P+V T T ++ G
Sbjct: 99 EFNGITSDLVILS---ILINCFSQ---LGQNPLSFSVLAKILKMGYEPNVITLTTLIKGL 152
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVV---TLI-------------QLLQRLEMGHI-PRT 176
C G+ ++A++ ++ + G N V TLI QLL+R++ + P
Sbjct: 153 CLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNV 212
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +N +I ++C V +++A L M G P +++ LI
Sbjct: 213 VMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALI 254
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G++ +A + V G + +Y +++G CKVG+++ A++LL + V NVV
Sbjct: 156 GQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMY 215
Query: 160 -TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKA 195
T+I + ++++ G P +T+N +I C VGK+ A
Sbjct: 216 NTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDA 266
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+E+A + ++ G DV YTA++ GFC G +E+++LL++ E G N VT
Sbjct: 471 GRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVT 529
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL- 165
++ L++ KN KP ++ + I+ K + + L + G+T ++V L L+
Sbjct: 58 SFNRLLHQKNP--KPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILIN 115
Query: 166 ----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ L+MG+ P IT +I+ LC G+IH+AL
Sbjct: 116 CFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQAL 162
>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 653
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 76/189 (40%), Gaps = 33/189 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K L E IF+ G + + L++ +LN Q R
Sbjct: 360 LKGHHLVETCGIFDCFVSRGAKPGFNGY--LVLVQALLNAQ--------------RFSAG 403
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
L + DGL VYTY A++D CK R+ A L E +RG++ N++T L
Sbjct: 404 DRYLKQMGGDGLLSSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSG 463
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ LE G P ITF+ +I LC +I A M E G P+
Sbjct: 464 YSAGGDVKKVHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPN 523
Query: 211 RTSHDMLIK 219
++++LI+
Sbjct: 524 EITYNILIR 532
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 17/147 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F S + G V++ + ++ + G PDV T++ I++ C+ +A + E +E G
Sbjct: 460 FLSGYSAGGDVKKVHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWG 519
Query: 154 VTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ N +T ++L + E G P +N +IQ+ C + K+ KA
Sbjct: 520 IKPNEITYNILIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAE 579
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
LL M G P ++ LIK L +
Sbjct: 580 ELLKTMLRIGLKPDNFTYSTLIKALSE 606
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 35/174 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A +K+ D F + + G + +N L+ + + +VK F+N
Sbjct: 501 RAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSCSTGDTGRSVKLFAN----------- 549
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+K GL P++Y Y AI+ FCK+ + +A ELL L
Sbjct: 550 -----MKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTM------------------L 586
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
+G P T++ +I+AL G+ +A + M HG +P + L+++LD
Sbjct: 587 RIGLKPDNFTYSTLIKALSESGRESEAREMFSSMERHGCVPDSYTKR-LVEELD 639
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 36/194 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-VKF------------FSNHLMV--- 101
D+F I G S +N ++ ALV N + A VKF F+ ++++
Sbjct: 160 DVFAQISFLGMKPSTRLYNAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNILIHGV 219
Query: 102 ---GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL----------NE 148
G V+EA ++ ++ +G +P+V+TYT ++DGF GR EA++ L NE
Sbjct: 220 CKKGVVDEAIRLVKQMEREGNRPNVFTYTILIDGFLIAGRIEEALKQLEMMQVRKLNPNE 279
Query: 149 AIERGVTQNVVTLIQ-------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
A R + + + LL +E I + + ++ V+ L + L L
Sbjct: 280 ATIRTLVHGIFRCLPPCEAFEVLLGFMEKNSILQRVAYDTVLYCLSNNSMAKETALFLRK 339
Query: 202 MYEHGKIPSRTSHD 215
E G IP ++ +
Sbjct: 340 TGERGYIPDSSTFN 353
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
R E A L +++ G+ P++ T+ + G+ G + ++ + +E G +V+T
Sbjct: 434 RTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKVHGVVEKLLEHGCNPDVITFS 493
Query: 161 -LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+I L R LE G P IT+N +I++ C G +++ L M E
Sbjct: 494 LIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRSSCSTGDTGRSVKLFANMKES 553
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ +++ +I+
Sbjct: 554 GLSPNLYAYNAIIQSF 569
>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
Length = 796
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 21/133 (15%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T V S H G +EA E L + + D Y+AI+ FC+ GR ++A E++NE
Sbjct: 377 NTFVHMLSKH---GHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNE 433
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+G IP +T+ +VI LC K+ +A +L MY+HG
Sbjct: 434 MFSKGC------------------IPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCK 475
Query: 209 PSRTSHDMLIKKL 221
P+ S+ L+ L
Sbjct: 476 PNTVSYTALLNGL 488
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+++A E++ + + G PDV TYT++++G C+ + ++A ++L + + G N V+
Sbjct: 422 GRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSY 481
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L E IP IT++ ++ GK +A L+ M +
Sbjct: 482 TALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIK 541
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ ++LI+ L Q+
Sbjct: 542 KGFFPTPVEINLLIQSLCQE 561
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 17/110 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A +ML + G KP+ +YTA+++G CK G S EA E++N + E N +T
Sbjct: 458 KVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYS 517
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
L+ + ++ G P + N +IQ+LC K+ +A
Sbjct: 518 VLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEA 567
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 22/119 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA ++ M + GL P TY ++ +C++GR + ++LL + + R Q T
Sbjct: 632 GRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSR---QECRT- 687
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF-LMYEHGKIPSRTSHDMLIK 219
+N VI+ LC G + +A LL ++ KI + T H MLI+
Sbjct: 688 ----------------AYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCH-MLIE 729
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 74/177 (41%), Gaps = 35/177 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L+ + + ++K G +S N + LVM N D AV+F +V
Sbjct: 244 RAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVE------ 297
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++P+V TY ++ G+C + R +AMEL+ E +G +
Sbjct: 298 ----------IEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCS------------- 334
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK-IPSRTSHDMLIKKLDQQ 224
P I++ V+ LC +I + LL+ M + +P + +++ + L +
Sbjct: 335 -----PDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKH 386
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 20/118 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E A +L ++ PDV TYT I+D K GR EA +L
Sbjct: 599 LEAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKL------------------ 640
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ L +G IP +T+ VI C +G++ L LL M + RT+++ +I+KL
Sbjct: 641 AMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKML--SRQECRTAYNQVIEKL 696
>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Glycine max]
Length = 693
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE-RGVTQNVVT 160
G V++A+EML + G KP+VYT+TA++DG CK G + +A L + + NV+T
Sbjct: 286 GSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLT 345
Query: 161 LIQ----------------LLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LL R+ E G P T T+ +I C G +A L+ +M
Sbjct: 346 YTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMN 405
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
E G P+ +++ ++ L ++
Sbjct: 406 EEGFSPNVCTYNAIVDGLCKK 426
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
+T H G E AYE LMNV N+ G P+V TY AI+DG CK GR EA ++L
Sbjct: 379 NTYTTLIDGHCKAGNFERAYE-LMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLK 437
Query: 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
G+ + +T+ +I C +I +AL+L M + G
Sbjct: 438 SGFRNGLDAD------------------KVTYTILISEHCKQAEIKQALVLFNKMVKSGI 479
Query: 208 IPSRTSHDMLI 218
P S+ LI
Sbjct: 480 QPDIHSYTTLI 490
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------- 168
GL+P++ +T +++G CK G +A E+L E + RG NV T L+ L
Sbjct: 267 GLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKA 326
Query: 169 ---------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
H P +T+ +I C K+++A +LL M E G P+ ++ LI
Sbjct: 327 FRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLI 385
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 19/118 (16%)
Query: 109 EMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
EML++ +K GL P+ TYT ++DG CK G A EL+N E G + NV
Sbjct: 363 EMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVC-------- 414
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225
T+N ++ LC G++ +A +L + +G + ++ +LI + +Q
Sbjct: 415 ----------TYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQA 462
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G VE A + + G++P+ +Y ++ G+CK+G E+ L IERG + T
Sbjct: 180 MGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNAT 239
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L +++ EMG P I F +I+ LC G + +A +L M
Sbjct: 240 LSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMV 299
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G P+ +H LI L ++
Sbjct: 300 GRGWKPNVYTHTALIDGLCKK 320
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 37/196 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK-------------- 93
KA + ++ N + ++G + +V +N ++ L A K
Sbjct: 389 CKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADK 448
Query: 94 -----FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
S H +++A + + G++PD+++YT ++ FC+ R E+ E
Sbjct: 449 VTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEE 508
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
A+ G+ +P T+ ++I C G + AL M +HG
Sbjct: 509 AVRFGL------------------VPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCA 550
Query: 209 PSRTSHDMLIKKLDQQ 224
++ LI L +Q
Sbjct: 551 SDSITYGALISGLCKQ 566
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 37/189 (19%)
Query: 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------- 96
+ K + +K+ + +FN + K G + + L+ + FF
Sbjct: 457 EHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVP 516
Query: 97 -----NHLMVGRVEE-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
++ G E A + + + G D TY A++ G CK + +EA L
Sbjct: 517 TNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLY 576
Query: 147 NEAIERGVTQNVVTLIQL----------------LQRLEMGHIPRTITFNNVIQALCGVG 190
+ IE+G+T VT + L L+RLE RT+ N +++ LC
Sbjct: 577 DAMIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKLWVRTV--NTLVRKLCSER 634
Query: 191 KIHKALLLL 199
K+ A L
Sbjct: 635 KVGMAALFF 643
>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial; Flags: Precursor
Length = 602
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 44/250 (17%)
Query: 16 LVDSPSRSPSAAESLDL--KENPRSLQAQRF-----VDKI-KASPLKERIDIFNSIKKDG 67
+V+ RS + +LDL K R+++A F +D + + + I +F ++ G
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258
Query: 68 TNWSVSDFNDLLMALVMLNEQDTA---------------VKFFSNHLMV----GRVEEAY 108
SV +N L+ L + + V F+ L V G+++EA
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 318
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + G+ P++ TY +MDG+C R +EA +L+ + + ++VT L++
Sbjct: 319 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
M G + +T++ ++Q C GKI A L M HG +P
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDV 438
Query: 212 TSHDMLIKKL 221
++ +L+ L
Sbjct: 439 MTYGILLDGL 448
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA ++ + +G +PDV TY +I++G C+ G ++ A++LL + ER V +V T
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 231
Query: 162 ----------------IQLLQRLEMGHIPRT-ITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L + +E I + +T+N++++ LC GK + LLL M
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 291
Query: 205 HGKIPSRTSHDMLI 218
+P+ + ++L+
Sbjct: 292 REIVPNVITFNVLL 305
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA---------------- 91
+K L+E +++ + G + ++ +N L+ M N A
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368
Query: 92 VKFFS---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
V F S + MV RV++ ++ N+ GL + TY+ ++ GFC+ G+ A EL E
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428
Query: 149 AIERGVTQNVVTLIQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGK 191
+ GV +V+T LL L + G + + + + +I+ +C GK
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK 488
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A L + G P+ ++ ++I L ++
Sbjct: 489 VEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKK 521
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+A+ + ++ G+KP+V TYT ++ G CK G +EA LL + E G N T
Sbjct: 487 GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546
Query: 162 IQLLQ 166
L++
Sbjct: 547 NTLIR 551
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----- 161
AY +L V G +PD T+ ++ G G+ +EA+ L++ +E G +VVT
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 201
Query: 162 -----------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ LL+++E ++ + T++ +I +LC G I A+ L M G
Sbjct: 202 GICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 261
Query: 210 SRTSHDMLIKKL 221
S +++ L++ L
Sbjct: 262 SVVTYNSLVRGL 273
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 34/222 (15%)
Query: 18 DSPSRSPSAAESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFN 76
DS + E LD + +P + + + K + + +++ ++ K+G + +N
Sbjct: 211 DSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYN 270
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
+L + A+ F L +++DG++PDV TY ++MD CK
Sbjct: 271 SILHGYCSSEQPKEAIGF----------------LKKMRSDGVEPDVVTYNSLMDYLCKN 314
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQR-------LEM----------GHIPRTITF 179
GRS EA ++ + +RG+ ++ T LLQ +EM G P F
Sbjct: 315 GRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVF 374
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
N +I A K+ +A+L+ M +HG P+ ++ +I L
Sbjct: 375 NILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGIL 416
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 60 FNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
FNSI K+G DL++ + + T + + G+++EA ++L ++
Sbjct: 479 FNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMF 538
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
+ G+KPD TY +++G+C+V R ++A+ L E + GV+ N++T +LQ L H R
Sbjct: 539 SVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF--HTRR 596
Query: 176 T 176
T
Sbjct: 597 T 597
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 25/210 (11%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDT 90
L +N RS +A++ D + L+ I + ++ + T ++ + + LL L++ N
Sbjct: 311 LCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALL-DLMVRNGIHP 369
Query: 91 AVKFFSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
F N L+ +V+EA + ++ GL P+V TY A++ CK G ++AM
Sbjct: 370 DHHVF-NILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLY 428
Query: 146 LNEAIERGVTQNVVTLIQL-----------------LQRLEMGHIPRTITFNNVIQALCG 188
+ I+ G+T N++ L L+ L+ G TI FN++I + C
Sbjct: 429 FEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCK 488
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G++ ++ L LM G P+ ++ LI
Sbjct: 489 EGRVIESEKLFDLMVRIGVKPNVITYSTLI 518
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 37/192 (19%)
Query: 48 IKASPLKERID----IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
I A +E++D +F+ +++ G N +V + ++ L D A+ +F +
Sbjct: 378 ICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMI---- 433
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++GL P++ YT+++ C + ++A EL+ E ++RG+ N +
Sbjct: 434 ------------DEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNS 481
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ + +G P IT++ +I C GK+ +A LL M+ G
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG 541
Query: 207 KIPSRTSHDMLI 218
P +++ LI
Sbjct: 542 MKPDCVTYNTLI 553
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 20/139 (14%)
Query: 103 RVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
R +EA E+L + +D G PDV +YT +++GF K G S++A +E ++R ++ +VV
Sbjct: 173 RSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVV 232
Query: 160 TLIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ L G +P +T+N+++ C + +A+ L M
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM 292
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 293 RSDGVEPDVVTYNSLMDYL 311
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------- 98
+++ I K GT +S +N +L L N D A++ F N
Sbjct: 602 ELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 661
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L VGR +EA ++ + +GL PDV TY+ + + + G E +L E G T N
Sbjct: 662 LKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 721
Query: 159 VTLIQLLQR-LEMGHIPRTITFNNVI 183
L ++++ L+ G I R T+ ++I
Sbjct: 722 RMLNSIVRKLLQRGDITRAGTYLSMI 747
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++AY + + + PDV TY++I+ CK ++AME+L ++ GV N +T
Sbjct: 210 GDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTY 269
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L+++ G P +T+N+++ LC G+ +A + M +
Sbjct: 270 NSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTK 329
Query: 205 HGKIPSRTSHDMLIK 219
G P ++ L++
Sbjct: 330 RGLEPDIATYCTLLQ 344
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 41/222 (18%)
Query: 44 FVDKIKASPLKE-RI----DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98
F + I S KE R+ +F+ + + G +V ++ L+ + + D A K S+
Sbjct: 478 FFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSM 537
Query: 99 LMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
VG R+++A + + + G+ P++ TY I+ G R+
Sbjct: 538 FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRT 597
Query: 140 NEAMELL--------------NEAIERGVTQNVVT--LIQLLQRLEMGHIP-RTITFNNV 182
A EL I G+ +N +T +++ Q L + + T TFN +
Sbjct: 598 AAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 657
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
I AL VG+ +A L + +G +P ++ ++ + L +Q
Sbjct: 658 IGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQ 699
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ + L NV G + + T+T ++ G C R+++AM++
Sbjct: 101 GRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI---------------- 144
Query: 162 IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH---GKIPSRTSHDML 217
+L+R+ E+ +P + +++ LC + +AL LL +M + G P S+ +
Sbjct: 145 --VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTV 202
Query: 218 I 218
I
Sbjct: 203 I 203
>gi|356523566|ref|XP_003530408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Glycine max]
Length = 475
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 38/187 (20%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLL----------MALVMLNEQDTAVKFFSNHLMV------ 101
D+ S + +G+ +V+ F ++L MAL +L + + ++ +M
Sbjct: 112 DVIESYEAEGSLVTVNMFREVLKLCKEAQLADMALWVLRKMEDTFNLHADTVMYNLVIRL 171
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G +E A ++ + ++GL PD+ TY AI++GF GRS EA +L G + N
Sbjct: 172 CCKKGDIETALKLTSEMSSNGLCPDLITYMAIVEGFSNAGRSEEAYSVLKVMRLHGCSPN 231
Query: 158 VVTL----------------IQLLQRLEMGHI--PRTITFNNVIQALCGVGKIHKALLLL 199
+V L ++LL +E G + P +T+ +VIQ+ C G+ +AL +L
Sbjct: 232 LVILSAILDGFCRSGSMERALELLDEMEKGGVCTPNVVTYTSVIQSFCKRGQWKEALDIL 291
Query: 200 FLMYEHG 206
M G
Sbjct: 292 DRMKAFG 298
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 102 GRVEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +E A E+L ++ G+ P+V TYT+++ FCK G+ EA+++L+ G N VT
Sbjct: 246 GSMERALELLDEMEKGGVCTPNVVTYTSVIQSFCKRGQWKEALDILDRMKAFGCHANHVT 305
Query: 161 LIQLLQRLEM-GHIPRTITFNN--VIQALCGVGKIHKALLL 198
+ L++ L GH+ + + V++ G + +L++
Sbjct: 306 VFTLVESLCADGHVEQGYGLFDKFVVEHCVSYGDFYSSLVI 346
>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
Length = 603
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 17/117 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+EML + G KP+VYT+T+++DG CK G + +A L + + ++N
Sbjct: 289 GSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVR---SEN---- 341
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
H P +T+ +I C K+++A +LL M E G +P+ ++ LI
Sbjct: 342 ----------HKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLI 388
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 52/188 (27%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T H G E AY+++ + ++G P++ TY AI++G CK GR EA ++L +
Sbjct: 382 NTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLED 441
Query: 149 AIERGV-----TQNVV---------------------------------TLIQLLQR--- 167
+ G+ T N++ TLI + R
Sbjct: 442 GFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENR 501
Query: 168 -----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
+ +G IP T+ ++I C G + A+ + +HG P ++
Sbjct: 502 MKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGA 561
Query: 217 LIKKLDQQ 224
+I L +Q
Sbjct: 562 IISGLCKQ 569
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S + ++ A +L +K GL P+ TYT ++DG CK G A +L+N
Sbjct: 348 TYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLM 407
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
G + P T+N ++ LC G++ +A +L +++G P
Sbjct: 408 SSEGFS------------------PNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKP 449
Query: 210 SRTSHDMLIKKLDQQ 224
+ ++++L+ + +Q
Sbjct: 450 DKFTYNILMSEHCKQ 464
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G VE A + + G++PD +Y ++ +CK+G EA + L+ +ERG + T
Sbjct: 183 MGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNAT 242
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ R +MG P I F +I+ LC G I +A +L M
Sbjct: 243 FTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMV 302
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G P+ +H LI L ++
Sbjct: 303 GKGWKPNVYTHTSLIDGLCKK 323
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 76/202 (37%), Gaps = 36/202 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
KA + D+ N + +G + ++ +N ++ L A K
Sbjct: 392 CKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDK 451
Query: 96 -------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
S H + +A + + G++PD+++YT ++ FC+ R E+ E
Sbjct: 452 FTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEE 511
Query: 149 AIERGVT----------------QNVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGK 191
A+ G+ N+ ++ RL + G P +IT+ +I LC K
Sbjct: 512 AVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSK 571
Query: 192 IHKALLLLFLMYEHGKIPSRTS 213
+A L M E G +P +
Sbjct: 572 RDEARSLYDSMIEKGLVPCEVT 593
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 19/138 (13%)
Query: 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE 105
+ K +++ + +FN + K G + + L+ N + FF + +G +
Sbjct: 460 EHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIP 519
Query: 106 E-------------------AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
A + + + G PD TY AI+ G CK + +EA L
Sbjct: 520 TNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLY 579
Query: 147 NEAIERGVTQNVVTLIQL 164
+ IE+G+ VT I L
Sbjct: 580 DSMIEKGLVPCEVTRITL 597
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 36/200 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------HLMV--- 101
+ F+ +K+ G + FN +L + LN+ +T ++ ++M+
Sbjct: 187 ECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVL 246
Query: 102 ---GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
G++++A + + +++N G+KP+V TY ++ G+C GR A +L+ RGV +
Sbjct: 247 CKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDS 306
Query: 159 VTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
T L+ + E+G +P +T+N +I C G + KA
Sbjct: 307 YTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDE 366
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M +P+ +++++LI L
Sbjct: 367 MVRRAILPTVSTYNLLIHAL 386
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA M+ ++ + G+ PD TY +++G+C+ G + +A L +E I +G+ +VT
Sbjct: 390 GKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTY 449
Query: 162 IQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L G P I FN +I C G + +A LL M +
Sbjct: 450 TSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDK 509
Query: 205 HGKIPSRTSHDMLIK 219
+P +++ L++
Sbjct: 510 RNIVPDEVTYNTLMQ 524
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + +K D+F I ++G + + FN L+ H G ++ A+
Sbjct: 458 KRNRMKAADDLFEKIIREGASPDLIMFNALI----------------DGHCANGNLDRAF 501
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
+L + + PD TY +M G C+ G+ EA ELL E RG+ + ++ L+
Sbjct: 502 ALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGY 561
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ L +G P +T+N +IQ LC + A LL M G P
Sbjct: 562 SKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDD 621
Query: 212 TSHDMLIKKLDQ 223
+++ LI+ + +
Sbjct: 622 STYFSLIEGIGK 633
>gi|242058297|ref|XP_002458294.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
gi|241930269|gb|EES03414.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
Length = 534
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 35/203 (17%)
Query: 57 IDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA--YEMLMN 113
+ +F S D S +N +L ALV + A ++ G A Y +L+
Sbjct: 112 LHLFRSAPSDLALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYNVLLK 171
Query: 114 VK--------NDGL-------KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+ D L KPDV +Y I+DG C+ GR A+E+ +E + + + V
Sbjct: 172 AQCSDAAADIKDALRLFRNIPKPDVCSYNTIIDGLCRRGRLAAALEMFSEMVGKCIAPTV 231
Query: 159 VTLIQLLQRL--------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFL 201
VT L+ L EMG P +T++++I LC G+ AL L+
Sbjct: 232 VTYTTLIHWLAREGCFDDALKIFDEMGRRGVSPNLVTYSSLIDGLCKGGRAASALELMDR 291
Query: 202 MYEHGKIPSRTSHDMLIKKLDQQ 224
M + K+P+ ++ +I L ++
Sbjct: 292 MIKEKKLPNTITYSSVIDGLCKE 314
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 45/181 (24%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV----- 104
A+ +K+ + +F +I K V +N ++ L A++ FS MVG+
Sbjct: 178 AADIKDALRLFRNIPKP----DVCSYNTIIDGLCRRGRLAAALEMFSE--MVGKCIAPTV 231
Query: 105 ----------------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++A ++ + G+ P++ TY++++DG CK GR+ A+EL++
Sbjct: 232 VTYTTLIHWLAREGCFDDALKIFDEMGRRGVSPNLVTYSSLIDGLCKGGRAASALELMDR 291
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
I+ +P TIT+++VI LC + +A+ +L M G+
Sbjct: 292 MIKE------------------KKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRK 333
Query: 209 P 209
P
Sbjct: 334 P 334
>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 20/144 (13%)
Query: 101 VGRVEEAYEML--MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
G+V+ A+ ++ M K+ L P+V TYT ++ G+C EA+ LL E + RG+ N
Sbjct: 284 AGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNK 343
Query: 159 VTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+T L+Q L + G IP T T N +I+A C +GK+ +A +
Sbjct: 344 ITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFE 403
Query: 201 LMYEHGKIPSRTSHDMLIKKLDQQ 224
M E P ++ +L++ L Q+
Sbjct: 404 KMSELRVQPDSATYSVLVRSLCQR 427
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H +G++EEA+ + + ++PD TY+ ++ C+ G A E +E E+ +
Sbjct: 389 HCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEI--- 445
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
LL ++G P +N + + LC GK KA
Sbjct: 446 ------LLH--DVGCKPLVAAYNPMFEYLCSNGKTKKA 475
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVV 159
G +E+ ++ +K G+ P V T+ +++ K GR++ A +L +E ++ GVT +
Sbjct: 178 AGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTY 237
Query: 160 TLIQLLQRLEMGHI-----------------PRTITFNNVIQALCGVGKIHKA 195
T L++ M + P +T+N ++ LC GK+ A
Sbjct: 238 TFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIA 290
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA ++ + + LKPD Y+Y ++DG+C+ G ++EA L ++ ++ G+
Sbjct: 381 GEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE------ 434
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+N +++ LC VG AL + LM + G P + L+ L
Sbjct: 435 ------------PTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGL 482
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V++A + G PD +TY ++ G+ G +EA L +E + RG+ N+VT
Sbjct: 728 GKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTY 787
Query: 162 IQLL------------QRL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ QRL + G P +T+N +I C +G + A L M E
Sbjct: 788 NALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIE 847
Query: 205 HGKIPSRTSHDMLIKKL 221
G PS ++ LI L
Sbjct: 848 EGISPSVVTYSALINGL 864
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + G V+EA+ + + GL P++ TY A+++G CK + A L ++
Sbjct: 751 TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 810
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
++G+ NVVT L+ + +E G P +T++ +I LC G I
Sbjct: 811 HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDI 870
Query: 193 HKALLLLFLMYEHG 206
+++ LL M + G
Sbjct: 871 ERSMKLLNQMIKAG 884
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 37/183 (20%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----------- 102
K + +F+++ K G S+ N LL LV E TA + + VG
Sbjct: 173 KNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIM 232
Query: 103 --------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+V+EA + ++N G++P++ TY ++++G+ +G A +L E+GV
Sbjct: 233 VNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGV 292
Query: 155 TQNVVTLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
++NVVT L++ E +P + +I C GKI A+
Sbjct: 293 SRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAV 352
Query: 197 LLL 199
LL
Sbjct: 353 RLL 355
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 38/190 (20%)
Query: 31 DLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
DL +P + + +D KAS + + + +++++ + S+ +N L+ L
Sbjct: 535 DLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGL------- 587
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
F S L+ E ++L + GL P++ TY A++DG+CK G ++A E
Sbjct: 588 ----FKSRRLV-----EXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEM 638
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
E G++ N+ I + ++ L +G+I +A LL+ M +HG P
Sbjct: 639 TENGLSANI------------------IICSTMVSGLYRLGRIDEANLLMQKMVDHGFFP 680
Query: 210 SRTSHDMLIK 219
H+ +K
Sbjct: 681 ---DHECFLK 687
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ +G ++ A+++ + +G+ P V TY+A+++G CK G +M+LLN+ I+ GV
Sbjct: 828 GYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDS 887
Query: 157 NVVTLIQLLQ 166
++ L+Q
Sbjct: 888 KLIEYCTLVQ 897
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 66/137 (48%), Gaps = 18/137 (13%)
Query: 103 RVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
+++EA ++L ++ + L PD Y ++DG+C+ G+ ++A+ LL+E + G+ N+
Sbjct: 311 KMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFIC 370
Query: 162 IQLLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + G I P + ++N ++ C G +A L M +
Sbjct: 371 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ 430
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ L+K L
Sbjct: 431 EGIEPTVLTYNTLLKGL 447
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------ 154
+G++ EA E+ +K+ G PD TY ++DG+CK +A + + A+ER
Sbjct: 520 MGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFK-VKGAMEREXISPSIE 578
Query: 155 -----------TQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
++ +V LL + + G P +T+ +I C G + KA F M
Sbjct: 579 MYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEM 638
Query: 203 YEHG 206
E+G
Sbjct: 639 TENG 642
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 35/190 (18%)
Query: 30 LDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
+D P S +D + E ++ + + ++G +V +N LL L +
Sbjct: 394 VDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAF 453
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
D A++ + HLM+ G+ PD Y+ ++DG K+ A L +
Sbjct: 454 DDALQIW--HLMM--------------KXGVAPDEVGYSTLLDGLFKMENFEGASTLWKD 497
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ RG T++ ITFN +I LC +GK+ +A + M + G
Sbjct: 498 ILARGFTKS------------------RITFNTMISGLCKMGKMVEAEEIFDKMKDLGCS 539
Query: 209 PSRTSHDMLI 218
P ++ LI
Sbjct: 540 PDGITYRTLI 549
>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
pusilla]
Length = 431
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PD YTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 208 VQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 268 EIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLI 324
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GLKPD TYT ++DG CK G + A E I+ + + V
Sbjct: 296 GDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ +I C G + K LL M
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
+G +PS ++++L+
Sbjct: 416 NGHVPSVVTYNVLM 429
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 143 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 202
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV + T L+ L EM G +P +TF +I C G+
Sbjct: 203 MLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGR 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 263 VDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKK 295
>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial [Vitis vinifera]
gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
Length = 854
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A E+ ++ G PDV Y +++GFCKV R +EA ++L+E + +G+ +VVT
Sbjct: 613 VDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNL 672
Query: 164 LLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ + G I P IT+ +I LC G+ A+ L M G
Sbjct: 673 LIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKG 732
Query: 207 KIPSRTSHDMLIKKL 221
P+R S LI L
Sbjct: 733 CSPNRISFIALIHGL 747
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R EA L + +G PD+ Y+A +DGF K+ ++A+E+ + R
Sbjct: 577 RSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICAR---------- 626
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G+ P + +N +I C V ++ +A +L M G +PS ++++LI
Sbjct: 627 --------GYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 674
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ L + +P+V TYT ++DG C GR ++A+ L NE +G + N ++
Sbjct: 681 GDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISF 740
Query: 162 IQLLQRL--------------EMG--HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
I L+ L EMG P TI + +I + A +L M
Sbjct: 741 IALIHGLCKCGWPDAALLYFREMGERETPDTIVYVALITSFISNKNPTLAFEILKEMVAK 800
Query: 206 GKIP 209
GK P
Sbjct: 801 GKFP 804
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
++PD +++ ++DG C G+ + A+ L + + G QNV+ L+ +L
Sbjct: 453 VRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECY 512
Query: 169 ----EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
EM G P T N++ LC + AL ++ M HG P + +L+K+L
Sbjct: 513 LLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQL 572
Query: 222 DQQ 224
++
Sbjct: 573 CKR 575
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVTLI------- 162
L + + G +PD YT T+++ +C + ++A+ + NE RG V +V++++
Sbjct: 222 LKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKC 281
Query: 163 -------QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+L++R+E +G TF +I ++ KAL L M + G P + +
Sbjct: 282 GEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVY 341
Query: 215 DMLIKKL 221
D LI L
Sbjct: 342 DALIGGL 348
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Query: 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
+ LNE+ V + RV++A ++ ++ G PDV Y A++ G C +A
Sbjct: 299 IRLNEKTFCV-LIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKA 357
Query: 143 MELLNEAIERGVTQNVVTLIQLL--------------QRLE-MGHIPRTITFNNVIQALC 187
+ LL+E E G+ ++ L +L+ +RLE + + +N+V+ L
Sbjct: 358 LHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLV 417
Query: 188 GVGKIHKALLLLFLM 202
+ KA LL M
Sbjct: 418 NGKSVDKAYYLLRAM 432
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G V++A+E++ +++ G++ + T+ ++ GF + R ++A++L + + G
Sbjct: 281 CGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFA----- 335
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
P ++ +I LC +I KAL LL M E G P
Sbjct: 336 -------------PDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDP 371
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA E+ + G +PD +TY+ +M G CK+GR + A+ LL E ++G NVVT
Sbjct: 325 GKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTY 384
Query: 162 IQLLQRL--------------EMGHIPRTIT---FNNVIQALCGVGKIHKALLLLFLMYE 204
+L EM T+ +N +I ALC G++ +A+ L+ M
Sbjct: 385 TIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRS 444
Query: 205 HGKIPSRTSHDMLIKKL 221
G P S++ +I L
Sbjct: 445 QGCNPDICSYNTIIYHL 461
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA ++ +++ G PD+ +Y I+ C + EA + +E GV N +T
Sbjct: 430 GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITY 489
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM G +++N +I+A+C G + ++L+LL M E
Sbjct: 490 NTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAE 549
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ S+++LI +L ++
Sbjct: 550 KGIKPNNVSYNILISELCKE 569
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
K + E + + ++ G N + +N ++ L + + A F N
Sbjct: 427 CKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANG 486
Query: 98 -------HLMV--GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
H ++ GR ++A + + G DV +Y ++ CK G + ++ LL E
Sbjct: 487 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 546
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
E+G+ N V+ L+ Q L G P +T+N +I LC +G
Sbjct: 547 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 606
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+H AL LL ++ P ++++LI
Sbjct: 607 MHAALNLLEKLHNENVHPDIITYNILI 633
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR EA +L + G PD Y ++ C G EA LLNE + G +V
Sbjct: 188 LGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVN- 246
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
TF++V++ +CG+G++ +A L+ M G +P ++ L++
Sbjct: 247 -----------------TFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQG 289
Query: 221 L 221
L
Sbjct: 290 L 290
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE------RGV 154
+GRV EA ++ + G P V TY ++ G C+V +++EA +L E V
Sbjct: 258 LGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTV 317
Query: 155 TQNVVTLIQLLQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ +L + E+ G P T++ ++ LC +G+I A+ LL M + G
Sbjct: 318 IGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGF 377
Query: 208 IPSRTSHDMLI 218
P+ ++ +++
Sbjct: 378 APNVVTYTIVL 388
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 18/97 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A E+ + N GL PD+ TY +++G CK+G + A+ LL E+ +NV
Sbjct: 571 RVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLL----EKLHNENV---- 622
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
H P IT+N +I C V + A +LL
Sbjct: 623 ---------H-PDIITYNILISWHCKVRLLDDAAMLL 649
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
P T TF +ALC +G+ ++AL LL M HG +P + +I L Q
Sbjct: 173 PTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQ 223
>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
[Vitis vinifera]
gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 34/157 (21%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ E ++F ++ + +V + L+ L + D+A++ +L
Sbjct: 207 IGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIR----------------LLE 250
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+ + G+KP+V+TY+++MDG CK G S+ A+ELL+ + R H
Sbjct: 251 EMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSR------------------RH 292
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+P IT++ ++ LC GK+ +A+ +L M G P
Sbjct: 293 LPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRP 329
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + + N G PD YTY +++G C++G+ EA EL E + + VVT
Sbjct: 170 GTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTY 229
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P T+++++ C G +AL LL +M
Sbjct: 230 TSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVS 289
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+P+ ++ L+ L ++
Sbjct: 290 RRHLPNMITYSTLVHGLCKE 309
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 27/205 (13%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIK----KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
A R ++++ + +K + ++S+ K G + + D++++ L T
Sbjct: 245 AIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVH 304
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
G+++EA E+L +K GL+PD Y I+ GFC + + +EA L+E + G++
Sbjct: 305 GLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISP 364
Query: 157 NVVTLIQ-------LLQRLEMGHIPRTI----------------TFNNVIQALCGVGKIH 193
N +T ++Q L H R TF++++ C G +H
Sbjct: 365 NRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLH 424
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLI 218
KA L+ M G IP + + ++
Sbjct: 425 KAAHLVDEMVLDGCIPDEVTWNAVV 449
>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
Length = 676
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 53/176 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME----------------- 144
G V++A+ +L + GLKP+VYT+T+++DG CK+G + A
Sbjct: 265 GYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHT 324
Query: 145 -------------------LLNEAIERGVTQNV---VTLI-------------QLLQRLE 169
LL +E+G+ N TLI +L+ +++
Sbjct: 325 YTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMK 384
Query: 170 M-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ G +P T+N +I C GKI +A +L + G P + ++ MLI + +Q
Sbjct: 385 LEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQ 440
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 52/188 (27%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T H G + A+E++ +K +G P++YTY AI+ GFCK G+ +A ++L
Sbjct: 358 NTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRM 417
Query: 149 AIERGVTQNVVTLIQLL-QRLEMGHI---------------------------------- 173
A +G+ + VT L+ + + GHI
Sbjct: 418 ATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQ 477
Query: 174 -----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P T+ ++I C VGK AL + M +HG +P ++
Sbjct: 478 MEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGA 537
Query: 217 LIKKLDQQ 224
LI L ++
Sbjct: 538 LISGLCKE 545
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR EEA +L + +G D T T ++ FC+ GR + L +E
Sbjct: 195 GRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVE---------- 244
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
MG+ P + + + LC G + +A +L M G P+ +H LI L
Sbjct: 245 --------MGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGL 296
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
GL P TYT+++ G+C+VG+S A+++ ++ G +P I
Sbjct: 492 GLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGC------------------LPDPI 533
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
T+ +I LC ++ +A L M + +P
Sbjct: 534 TYGALISGLCKESRLEEARALFETMLDKHMVPC 566
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
D +++ ++ + T + + VG+ A ++ + G PD TY A++ G CK
Sbjct: 486 DKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKE 545
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQL 164
R EA L +++ + VT + L
Sbjct: 546 SRLEEARALFETMLDKHMVPCDVTCVTL 573
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 34/205 (16%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
NP VD + K +KE ++ + K N V ++ L+ ++NE + A +
Sbjct: 265 NPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKR 324
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F Y M G+ PDV+ Y+ +++G CK+ R +EA+ L E ++
Sbjct: 325 VF------------YTM----TQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKN 368
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ + VT L+ + L+ G P IT+NN+I ALC G + +A+
Sbjct: 369 MVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAI 428
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M + P+ + +L+ L
Sbjct: 429 ALFNKMKDQAIRPNVYTFTILLDGL 453
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 42/213 (19%)
Query: 15 LLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNSIKKD 66
++++ + E+L+L E P ++ +D + K+ + D+F+ +
Sbjct: 343 IMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDR 402
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G V +N+L+ AL D A+ F+ +K+ ++P+VYT+
Sbjct: 403 GQPPDVITYNNLIDALCKNGHLDRAIALFNK----------------MKDQAIRPNVYTF 446
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186
T ++DG CKVGR A+E + + +G NV RT T +I L
Sbjct: 447 TILLDGLCKVGRLKNALEFFQDLLTKGYCLNV----------------RTYTV--MINGL 488
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
C G + +AL L M ++G I + +++I+
Sbjct: 489 CKEGLLDEALALQSRMEDNGCISDAVTFEIMIR 521
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+EAY++ + G+ PDV TY+ ++ GFC VG+ N A++LLNE + + ++ T
Sbjct: 214 VDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTI 273
Query: 164 LLQRL-EMGHIPR----------------TITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L + G + + ++ ++ C V +++ A + + M + G
Sbjct: 274 LVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMG 333
Query: 207 KIPSRTSHDMLIKKL 221
P + ++I L
Sbjct: 334 VTPDVHCYSIMINGL 348
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 17/143 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S +VG++ A ++L + + + PD+YTYT ++D CK G+ EA +L ++ V
Sbjct: 241 SGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVN 300
Query: 156 QNVVTLIQLL------------QRL-----EMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+VV L+ +R+ +MG P ++ +I LC + ++ +AL L
Sbjct: 301 LDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNL 360
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
+++ +P ++ LI L
Sbjct: 361 FEEIHQKNMVPDTVTYTSLIDCL 383
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G A +L ++ ++P+V Y+ I+D CK +EA +L E + +G++ +VVT
Sbjct: 176 IGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVT 235
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKA 195
I LL + + +I P T+ ++ ALC GK+ +A
Sbjct: 236 YSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEA 287
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+EA V G + +Y +++G CK+G + A+ LL + NVV
Sbjct: 142 GKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIY 201
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ RL EM G P +T++ ++ C VG++++A+ LL M
Sbjct: 202 SMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVL 261
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P ++ +L+ L ++
Sbjct: 262 ENINPDIYTYTILVDALCKE 281
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 34/122 (27%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
FN +L++LV + TA+ + + + VE PD +T I++ FC
Sbjct: 61 FNKILISLVNVKRYPTAISLYK-QMELSEVE---------------PDYFTLNIIINCFC 104
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
G Q V+ + + L++G+ P TIT N +++ LC GK+ +
Sbjct: 105 HFG------------------QVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKE 146
Query: 195 AL 196
AL
Sbjct: 147 AL 148
>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
Length = 1014
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +++ + +F+ ++ G +V +N L+ + + G ++ A
Sbjct: 385 KRGMIEDALCLFDKMRDKGIKVTVYPYNSLI----------------NGYCKQGSLDRAR 428
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
+L + +GL P +Y+ ++ G C+ G + AMEL E ERG+ N T L+
Sbjct: 429 GLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGF 488
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ ++ IP +TFN +I+ C VG I KA L M E G P
Sbjct: 489 CKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDN 548
Query: 212 TSHDMLIKKL 221
++ LI L
Sbjct: 549 YTYRSLISGL 558
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
VEEA+ + + + G+ P+V+ Y A++D CK R ++A L E RG+ N VT
Sbjct: 319 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 378
Query: 164 LLQRL-EMGHIPRTIT----------------FNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L + G I + +N++I C G + +A LL M + G
Sbjct: 379 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438
Query: 207 KIPSRTSHDMLIKKL 221
P+ S+ LI L
Sbjct: 439 LTPTAASYSPLIAGL 453
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+++EA +++ + G PD +Y+ I+ CK+G N+A EL NE + +G+ +VV
Sbjct: 771 GKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVA 829
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A E+ + G+ + YT+TA+++GFCK + +EA L ++ I+ V N VT
Sbjct: 457 GDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTF 516
Query: 162 ----------------IQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
QL Q +EMG P T+ ++I LC + KA
Sbjct: 517 NVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKA 567
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE------- 169
DG P+ T+T +++ CK G A L E + V N T L
Sbjct: 682 DGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEK 741
Query: 170 ---------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
GH+ ++FN +I+ LC GKI +A+ L+ + E G P S+ +I +
Sbjct: 742 AKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHE 801
Query: 221 L 221
L
Sbjct: 802 L 802
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N LM G RV+EA E+ + N G+ D TY ++ GFC++ A+ + ++ I
Sbjct: 237 NVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIR 296
Query: 152 RGVT---QNVVTLIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHK 194
G N +I L++ E +G +P +N +I LC +
Sbjct: 297 LGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDD 356
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G P+ ++ +LI L ++
Sbjct: 357 ADRLFKEMAGRGLEPNEVTYAILIHALCKR 386
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 19/135 (14%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF----------------- 95
L +++ + + G W+ F L+ + D A + F
Sbjct: 459 LSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518
Query: 96 --SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ +VG + +A+++ + GLKPD YTY +++ G C ++A E + +
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578
Query: 154 VTQNVVTLIQLLQRL 168
N +L LL L
Sbjct: 579 AVLNNFSLTALLYGL 593
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++ A +++ ++++G+K Y +M G CK R EA+E+ N + GVT +
Sbjct: 214 LDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTAD------ 267
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+T+ ++ C + ++ AL + M G +PS + +I +L +
Sbjct: 268 ------------EVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRK 315
Query: 224 Q 224
+
Sbjct: 316 K 316
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA ++E ID+ I + G + ++ ++ L + G + +A+
Sbjct: 769 KAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKM----------------GDINKAF 812
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKV-GRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
E+ + GLKPDV Y I +C V G S++A+ + I GV N T LL
Sbjct: 813 ELWNEMLYKGLKPDVVAYN-IFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871
Query: 168 LEM 170
+ +
Sbjct: 872 ISL 874
>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
Length = 789
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 46/234 (19%)
Query: 12 FSVLLVDSPSRSPSAAESLDLKE--NPRSLQAQRFVDKIKASPL--KERID----IFNSI 63
FS+L +D +S + ++L L + R + F + S L +R+D +F+ +
Sbjct: 199 FSIL-IDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKM 257
Query: 64 KKDGTNWSVSDFNDLLMALVMLNEQDTA---VKFFS-----------NHLMVG-----RV 104
K G N LL ML+ D A ++ F + L+ G R
Sbjct: 258 KDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRY 317
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
E+ + + D +KPDVY YT +M G + G+ +A+ELLNE E GV
Sbjct: 318 EDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGV---------- 367
Query: 165 LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P T+ +N +I+ C +G + +A L + H P+ ++ +LI
Sbjct: 368 --------VPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILI 413
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV++AY + +K+ G+ PD T A+++GFC + R +EA LL + G +V
Sbjct: 246 RVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYS 305
Query: 162 --------------IQLLQR--LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+QLL R +E P + +++ L GK+ AL LL M E
Sbjct: 306 CLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTES 365
Query: 206 GKIPSRTSHDMLIK 219
G +P +++LIK
Sbjct: 366 GVVPDTVCYNVLIK 379
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 25/125 (20%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G + EA + + + P+V TY+ ++ G C+ G + +A E+ NE +E+
Sbjct: 384 MGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNE-MEK-------- 434
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+G P +TFN++I LC G++ KA LL + M E G+ PS L +
Sbjct: 435 ---------LGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKM-EIGRNPS------LFLR 478
Query: 221 LDQQP 225
L Q P
Sbjct: 479 LSQGP 483
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +AY +LM + + G P +YTY +++GFCK+G N A +L E +G++ + VT
Sbjct: 503 GLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTY 562
Query: 162 IQLLQRL 168
L+ L
Sbjct: 563 GTLINGL 569
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------------ 168
P+V T++ ++DG CK G +A+ L +E +RG+ + T ++ L
Sbjct: 194 PNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRL 253
Query: 169 -----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G P +T N ++ C + ++ +A LL L + G + + LI+ L
Sbjct: 254 FDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGL 311
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 18/124 (14%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+L +G ++A E ++++ PDVYTY I+D I++
Sbjct: 136 YLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVL----------------IQKNFLLL 179
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+T+ + +L +P TF+ +I LC G + AL L M + G +P ++ ++
Sbjct: 180 ALTVYTRMMKLNC--LPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVV 237
Query: 218 IKKL 221
I L
Sbjct: 238 ISGL 241
>gi|255661030|gb|ACU25684.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 376
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 33/188 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + L E + + N + K+G + +N L+ + +++ D A++ F
Sbjct: 141 KEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSKFDDAIRVFR------------ 188
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
EM + P V TY +++G CK R EA +L+ E +E+G V+T L++ L
Sbjct: 189 EM----GSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGL 244
Query: 169 EMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
GH P N +I LC VGK AL+L F M P+
Sbjct: 245 CQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNL 304
Query: 212 TSHDMLIK 219
+H+ L++
Sbjct: 305 VTHNTLME 312
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 37/211 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA- 107
+A +K+ I+++ + ++ + +V FN ++ L + D A+ + G VE++
Sbjct: 37 RAGRIKDCIELWELMGREXSQ-NVVSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDST 95
Query: 108 -YEMLMN--VKND---------------GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
Y +L++ KN G D + Y+A+++G CK + +EA+ +LN
Sbjct: 96 TYGILVDGFCKNGYINKSLRVLEIAEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGM 155
Query: 150 IERGVTQNVVTLIQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGKI 192
I+ G T N L+ EMG P +T+N +I LC +
Sbjct: 156 IKNGGTPNAHVYNTLINGFMGVSKFDDAIRVFREMGSTNCSPTVVTYNTLINGLCKGERF 215
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+A L+ M E G P ++ +L+K L Q
Sbjct: 216 AEAYDLVKEMLEKGWKPCVITYSLLMKGLCQ 246
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + + + PD Y A+++GF + GR + +EL E + R +QNVV+
Sbjct: 4 GDIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELW-ELMGREXSQNVVSF 62
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++ L + G + + T+ ++ C G I+K+L +L + E
Sbjct: 63 NIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEIAEE 122
Query: 205 HGKIPSRTSHDMLIKKLDQQP 225
G + ++ +I L ++
Sbjct: 123 KGGVLDAFAYSAMINGLCKEA 143
>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 701
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + H G AYE++ + ++G P++YTY A +D CK R+ EA ELLN+
Sbjct: 394 NTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNK 453
Query: 149 AIERGVTQNVVTLIQLLQ-RLEMGHIPRTITF---------------NNV-IQALCGVGK 191
A G+ + VT L+Q + + I + + F NN+ I A C K
Sbjct: 454 AFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKK 513
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ ++ L L+ G IP++ ++ +I
Sbjct: 514 MKESERLFQLVVSLGLIPTKETYTSMI 540
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NVVT 160
G +++A+EML + +G KP+VYT+TA++DG CK G + +A L + + + NV T
Sbjct: 301 GSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHT 360
Query: 161 LIQL---------LQRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ L R EM G P T+ +I C G +A L+ LM
Sbjct: 361 YTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMG 420
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+ G +P+ +++ I L ++
Sbjct: 421 DEGFMPNIYTYNAAIDSLCKK 441
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G E+A+ + + V++D KP+V+TYT+++ G+CK + N A L + E+G+ NV T
Sbjct: 336 GWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNT 395
Query: 161 LIQLL----------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + E+ G +P T+N I +LC + +A LL +
Sbjct: 396 YTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAF 455
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G ++ +LI++ +Q
Sbjct: 456 SCGLEADGVTYTILIQEQCKQ 476
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V A + + G KP++ +T+++DG CK G +A E+L E + G NV T
Sbjct: 266 GLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTH 325
Query: 162 IQLLQRL-EMG-----------------HIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L + G + P T+ ++I C K+++A +L M
Sbjct: 326 TALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMK 385
Query: 204 EHGKIPSRTSHDMLI 218
E G P+ ++ LI
Sbjct: 386 EQGLFPNVNTYTTLI 400
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 78 LLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
L+++L ++ ++T S + G ++ A + N+K G PD +TY +++ G CK
Sbjct: 523 LVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKS 582
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQL 164
+EA +L I+RG++ VT + L
Sbjct: 583 MVDEACKLYEAMIDRGLSPPEVTRVTL 609
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 52/176 (29%)
Query: 101 VGRVEEAYEMLMNVKNDGLK-----------------------------------PDVYT 125
+GR+ EA M+M+++N GL PD +
Sbjct: 160 IGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSS 219
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----------------- 168
Y ++ G + G+ EA L I+RG + T +L L
Sbjct: 220 YKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMI 279
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
++G P I F ++I LC G I +A +L M +G P+ +H LI L ++
Sbjct: 280 DLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKR 335
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 32/198 (16%)
Query: 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
F ++ + LK + + +++ G SV N L+ AL + G
Sbjct: 127 FAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNS---------------GT 171
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++ A+E+ + G PD YTY +++G CK+G++ EA EL E +G + +VVT
Sbjct: 172 IDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSC 231
Query: 164 LLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L + G++ P T+++++ LC G +A+ LL +M
Sbjct: 232 LMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKR 291
Query: 207 KIPSRTSHDMLIKKLDQQ 224
P+ ++ LI L ++
Sbjct: 292 HKPNMVTYSTLINGLCKE 309
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 18/108 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA + +K ++P+V+TY+++MDG CK G S EAMELL + +
Sbjct: 240 GNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRK--------- 290
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
H P +T++ +I LC GK+ +A+ L M G P
Sbjct: 291 ---------RHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKP 329
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA E L +K GLKPD Y I++GFC + + EA L+E + ++ N VT
Sbjct: 310 GKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTW 369
Query: 162 IQLLQRLEMGHIPRTITFNN-VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ NN V+Q LC G ++++ L M G + D L+K
Sbjct: 370 ------------SLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVK 416
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 91/241 (37%), Gaps = 40/241 (16%)
Query: 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSV-- 72
LL S +PS E L L+A+R + K K + N + D T + V
Sbjct: 6 LLKWSKQITPSKVEQL--------LRAERDLRKAKIIFDSASAEYSNGFRHDHTTFGVMI 57
Query: 73 ---SDFNDLLMALVMLNEQD------TAVKFFSNHLMVGRVE---EAYEMLMNVKNDGLK 120
N+ A MLN T F S GRV +A + + + G K
Sbjct: 58 SKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAIRVFHKMNDFGCK 117
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------------ 168
P +Y ++ + + AM E GV Q+VV+L L++ L
Sbjct: 118 PTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFE 177
Query: 169 ---EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
EM G P + T+ +I LC +GK +A L M G PS ++ L+ L
Sbjct: 178 IFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLC 237
Query: 223 Q 223
Q
Sbjct: 238 Q 238
>gi|449530988|ref|XP_004172473.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 347
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 28/204 (13%)
Query: 27 AESLDL-KENPRSLQAQRFVD----KIKASPLKERIDIFN-SIKKDGTNWSVSDFNDLLM 80
A S++L K + R L+ Q+ VD K + P+ I ++N +I + ++ D +L
Sbjct: 117 AHSVELPKSDLRHLETQKIVDSFGKKAMSIPMSNNI-VYNIAITGLCKSKNIDDVRRILS 175
Query: 81 ALVMLN---EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
L++ + T VG+V EA+ + ++ N GL P++ Y A+++G CK G
Sbjct: 176 DLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSG 235
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
+ A L N+ +G++ P +T+N +I C G+ +AL
Sbjct: 236 NLDRARRLFNKLARKGLS------------------PTVVTYNTLIDGYCKGGRTTEALE 277
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
L M E G PS ++ LI L
Sbjct: 278 LKDKMREEGICPSSITYSTLIHGL 301
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + + GL P V TY ++DG+CK GR+ EA+EL ++ E G+
Sbjct: 235 GNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGIC------ 288
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
P +IT++ +I L GK +++ LL M + GK S
Sbjct: 289 ------------PSSITYSTLIHGLYMEGKSEQSMGLLNEMMKAGKGSS 325
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 16/111 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K+ L +FN + + G + +V +N L+ + GR EA
Sbjct: 233 KSGNLDRARRLFNKLARKGLSPTVVTYNTLI----------------DGYCKGGRTTEAL 276
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
E+ ++ +G+ P TY+ ++ G G+S ++M LLNE ++ G +V+
Sbjct: 277 ELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSMGLLNEMMKAGKGSSVM 327
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 97 NHLMVG--RVEEAYEM---LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L+ G R EE ++ L +KN L P+V TY +++ G+C G ++A + I+
Sbjct: 15 NSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMID 74
Query: 152 RGVTQNVVTLIQLLQRL 168
+G+ N++ +++ L
Sbjct: 75 KGIAPNIIIGSKIVSSL 91
>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Vitis vinifera]
Length = 877
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 38/209 (18%)
Query: 48 IKASPLKERIDIFNS-IKKDGTNWSVSDFNDLLMALV---MLNE-QDTAVKF-------- 94
I+A+ ++ ID FN+ I +D W V N LL ALV M+ E +D K
Sbjct: 201 IRANRIENAIDCFNAMICQDVIPW-VPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGD 259
Query: 95 -FSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
F+ H+MV GRVEEA E K G+K D Y+ I+ CK SN +ELL
Sbjct: 260 HFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLE 319
Query: 148 EAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVG 190
E ERG + T ++ + + G + ++++ C G
Sbjct: 320 EMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQG 379
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ AL L + E G P++ ++ +LI+
Sbjct: 380 NLDSALNLFNKITEDGLFPNKVTYSVLIE 408
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA +L N+ N G+ P+V +Y ++ G C+ G + A + ++ + R + NVVT
Sbjct: 483 GKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTY 542
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q L + P TFN +I LC VG++ +A L E
Sbjct: 543 SILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLE 602
Query: 205 HGKIPSRTSHDMLI 218
G IPS +++ ++
Sbjct: 603 EGFIPSCMTYNSIV 616
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 65 KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
K G + D D +++L + T + VG++ EA + L N +G P
Sbjct: 551 KKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCM 610
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QRLEMGHIPR--- 175
TY +I+DGF K G + A+ + E E GV+ NVVT L+ R+++ R
Sbjct: 611 TYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEM 670
Query: 176 --------TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ +I C + A L F + E G P+R ++ +I
Sbjct: 671 REKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMI 721
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
A + G ++ A + + DGL P+ TY+ +++G C G +A EL +
Sbjct: 368 ATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMK 427
Query: 151 ERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIH 193
G+ +V + LL + ++ G + T+N ++ LC GK+
Sbjct: 428 LNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCG-VANIFTYNIMMSWLCKGGKMD 486
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLI 218
+A LL M G +P+ S++ +I
Sbjct: 487 EACSLLDNMVNQGMVPNVVSYNDMI 511
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 27/154 (17%)
Query: 74 DFNDLLMALV----MLNEQ-----DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
D N++ ALV M+N++ T L GR+ A ++ M + + G+ PD+
Sbjct: 726 DLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDII 785
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQ 184
T+ +++G C G+ A ++L E + +T P + +N +I
Sbjct: 786 TFHVLVNGLCNKGQLENARKILEEMDRKNMT------------------PSVLIYNTLIA 827
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G + +A L M + G +P ++D+LI
Sbjct: 828 GYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILI 861
>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
Length = 633
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R + AYE++ + +G+ PDV TY+ ++ G C G+ EA+ +L+ +E G N
Sbjct: 233 RFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPN----- 287
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
H T+ ++ A C G+IH+A LL M G PS ++++L++ L
Sbjct: 288 --------AH-----TYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEAL 333
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S G+V EA +L + +G +P+ +TYT I+ +C GR +EA LLN
Sbjct: 255 TYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTM 314
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
I G + T L++ L G P IT+++ + LC G+I
Sbjct: 315 IASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRI 374
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
K+ L+ M +G PS + ++L+
Sbjct: 375 DKSFALVDKMLSNGLQPSEVTLNILL 400
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 36/183 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN---------EQDTA------VKFFSN 97
+ E + N++ G S + +N L+ AL + E+ TA V +S+
Sbjct: 304 IHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSS 363
Query: 98 HL----MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++ GR+++++ ++ + ++GL+P T ++DG C+ + A LL + E G
Sbjct: 364 YMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELG 423
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
NVV +++RL + G P + TFN V+ +LC +G++HKAL
Sbjct: 424 WDANVVNYNTVMRRLCDERRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKAL 483
Query: 197 LLL 199
LL
Sbjct: 484 CLL 486
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN--EAIERGVTQNVVTLIQ--- 163
++ ++ G+ P+ +T+ ++ CK+GR ++A+ LL E + +T N TLI+
Sbjct: 449 KLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALCLLRSKEFVATVITYN--TLIRHLS 506
Query: 164 -----------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L Q +E G P IT++ VI LC K AL + E PS
Sbjct: 507 ISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPS 564
>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 638
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++E+A ++ + + G P+ Y+Y ++ GFCK+G +EAM+L + ++ G + ++
Sbjct: 381 MGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLS 440
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L EM + IT+N +IQ C GK+ ++ LL +
Sbjct: 441 CNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQ 500
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
G PS +S+ LI+KL Q
Sbjct: 501 AKGLQPSTSSYAHLIQKLCQ 520
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 39/242 (16%)
Query: 16 LVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPL-KERIDIFNSIKKDGTNWSVSD 74
L+++ + P+ + + +P + ++ + L +E + F+ +K+ G V
Sbjct: 169 LLEAKACVPAKSFLYSFEFSPEPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVET 228
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVG---------------------RVEEAYEMLMN 113
+N + + D K + + G +V AYE+L
Sbjct: 229 WNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCNDNKVSRAYEILRQ 288
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL--------- 164
DGL P + ++ GFCK + +EL++ I + ++ T ++
Sbjct: 289 SLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWM 348
Query: 165 -LQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
LQ E+ G+ P + + +I C +G++ A L F M + G +P+ S++
Sbjct: 349 TLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNT 408
Query: 217 LI 218
LI
Sbjct: 409 LI 410
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A+E+ +K+ G PD+ YT ++ GFCK+G+ +A +L E I++G
Sbjct: 351 QAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGF----------- 399
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P ++N +I C +G + +A+ L M + G + S + LI
Sbjct: 400 -------LPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLI 445
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +EAY+ + + DV TY ++ GFC+ G+ ++ +LL E +G+
Sbjct: 452 GRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQ------ 505
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T ++ ++IQ LC +G + +A + M+ G P + D +I L
Sbjct: 506 ------------PSTSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGL 553
Query: 222 DQQ 224
+Q
Sbjct: 554 CEQ 556
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 36/180 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
K L E + ++ + G + N L++ L + D A FF
Sbjct: 414 CKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDV 473
Query: 97 ---NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
N L+ G +V ++ ++L ++ GL+P +Y ++ C++G EA E+ N+
Sbjct: 474 ITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWND 533
Query: 149 AIERGVTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGK 191
RG+ V T ++ L E G++ P+ TF +IQ+L +GK
Sbjct: 534 MHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSLIQIGK 593
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVVT 160
G V++A+E+L + +G KP+VYT+T+++ G CK G + A L + I NV T
Sbjct: 915 GSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHT 974
Query: 161 LIQL---------LQRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ L R EM G +P T T+ +I C G KA L+ LM
Sbjct: 975 YTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMS 1034
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P+ +++ ++ L
Sbjct: 1035 NEGFFPNTCTYNSIVDGL 1052
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 52/188 (27%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T H G +AYE++ + N+G P+ TY +I+DG CK GR+ EA +LLN
Sbjct: 1008 NTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNT 1067
Query: 149 AIER-----GVTQNVV---------------------------------TLIQLLQR--- 167
+ GVT ++ TLI R
Sbjct: 1068 GFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNM 1127
Query: 168 -----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
+++G P T+ ++I C K+ A+ M +HG P S+
Sbjct: 1128 MKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGA 1187
Query: 217 LIKKLDQQ 224
LI L ++
Sbjct: 1188 LISGLCKE 1195
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVVTL 161
VE A + + G+ PD TY I+ G+C+ G EA + E +ERG V +TL
Sbjct: 812 VEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTL 871
Query: 162 I-------QLLQR--------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
I L+ R +MG P I ++++I LC G + +A LL M ++G
Sbjct: 872 IITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNG 931
Query: 207 KIPSRTSHDMLIKKLDQQ 224
P+ +H LI L ++
Sbjct: 932 WKPNVYTHTSLIHGLCKK 949
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V A V GL P++ Y++++ G CK G +A ELL E ++ G NV T
Sbjct: 882 VNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 941
Query: 164 LLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L + P T+ +I C K+ +A +L M E
Sbjct: 942 LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQ 1001
Query: 206 GKIPSRTSHDMLI 218
G +P+ ++ LI
Sbjct: 1002 GLVPNTNTYTTLI 1014
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S + ++ A + +K GL P+ TYT ++DG CK G ++A EL+
Sbjct: 974 TYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELM--- 1030
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+L+ G P T T+N+++ LC G+ +A LL
Sbjct: 1031 -------------ELMSN--EGFFPNTCTYNSIVDGLCKRGRAEEAFKLL 1065
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
D ++ L + ++T + +V A + + + G PD +Y A++ G CK
Sbjct: 1136 DEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKE 1195
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQL----------------LQRLEMGHIPRTITFN 180
R +EA +L + I++G++ VT + L L+RL RT+ +
Sbjct: 1196 SRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTV--H 1253
Query: 181 NVIQALCGVGKIHKALLLLFL 201
+I+ LC K+ AL LF
Sbjct: 1254 TLIRKLCCEKKV--ALAALFF 1272
>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
Length = 733
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 21/133 (15%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T V S H G +EA E L + + D Y+AI+ FC+ GR ++A E++NE
Sbjct: 314 NTFVHMLSKH---GHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNE 370
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+G IP +T+ +VI LC K+ +A +L MY+HG
Sbjct: 371 MFSKGC------------------IPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCK 412
Query: 209 PSRTSHDMLIKKL 221
P+ S+ L+ L
Sbjct: 413 PNTVSYTALLNGL 425
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+++A E++ + + G PDV TYT++++G C+ + ++A ++L + + G N V+
Sbjct: 359 GRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSY 418
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L E IP IT++ ++ GK +A L+ M +
Sbjct: 419 TALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMIK 478
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ ++LI+ L Q+
Sbjct: 479 KGFFPTPVEINLLIQSLCQE 498
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 17/110 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A +ML + G KP+ +YTA+++G CK G S EA E++N + E N +T
Sbjct: 395 KVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYS 454
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
L+ + ++ G P + N +IQ+LC K+ +A
Sbjct: 455 VLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEA 504
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 20/101 (19%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
PDV TYT I+D K GR EA +L ++ L +G IP +T+
Sbjct: 553 PDVVTYTTIIDALGKKGRIEEATKL------------------AMKMLRVGWIPTPVTYR 594
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
VI C +G++ L LL M + RT+++ +I+KL
Sbjct: 595 TVIHQYCRMGRVEDLLKLLEKML--SRQECRTAYNQVIEKL 633
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 22/119 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA ++ M + G P TY ++ +C++GR + ++LL + + R Q T
Sbjct: 569 GRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSR---QECRT- 624
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF-LMYEHGKIPSRTSHDMLIK 219
+N VI+ LC G + +A LL ++ KI + T H MLI+
Sbjct: 625 ----------------AYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCH-MLIE 666
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 35/177 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L+ + ++K G +S N + LVM N D AV+F +V
Sbjct: 181 RAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVE------ 234
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ P+V TY ++ G+C + R +A EL+ E +G +
Sbjct: 235 ----------IXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCS------------- 271
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK-IPSRTSHDMLIKKLDQQ 224
P I++ V+ LC +I + LL+ M + +P + +++ + L +
Sbjct: 272 -----PDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKH 323
>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
camara]
Length = 431
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + + A L +E + +G+ N VT L+
Sbjct: 208 VQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 324
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD +TYT ++DG CK G + A E I+ + + V
Sbjct: 296 GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ ++ C G + K LL M
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 416 DGHAPSVVTYNVLM 429
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 143 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 202
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 295
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++A ++L ++ +G PDV YT ++ GFCK + ++++ +E +++G V+T
Sbjct: 496 RLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYS 555
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++ + LE G P I + +VI LC +A L LM +
Sbjct: 556 IVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQT 615
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ ++++L+ KL
Sbjct: 616 GCAPTVVTYNVLVDKL 631
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 40/210 (19%)
Query: 31 DLKEN--PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87
D++ N P + VD + K++ + + I + + G +V +N L+ L
Sbjct: 227 DMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGN 286
Query: 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
D AV F+ +ML N PDV+TY ++DG+CK R + +LL
Sbjct: 287 MDEAVVLFN------------QMLEN----SCSPDVFTYNILIDGYCKQERPQDGAKLLQ 330
Query: 148 EAIERGVTQNVVT-------------------LIQLLQRLEMGHIPRTITFNNVIQALCG 188
E ++ G N +T L Q++ R + P TFN +I C
Sbjct: 331 EMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK--PSHFTFNLMIDMFCK 388
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
VG++ A L LM + G +P +++++I
Sbjct: 389 VGQLDLAYELFQLMTDRGCLPDIYTYNIMI 418
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 36/173 (20%)
Query: 82 LVMLNEQDTAVKFF---------------SNHLMVG-----RVEEAYEMLMNVKNDGLKP 121
L L++ D AVKFF N L+ + +EAY++ N + P
Sbjct: 106 LQQLDDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSP 165
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVV--TLIQLL------------- 165
D TY+ +++GFCK +A LL+E +RG V N V T+I+ L
Sbjct: 166 DSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHY 225
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ ++ P IT+ ++ ALC +I A L+L M E G P+ +++ LI
Sbjct: 226 RDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLI 278
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 26/166 (15%)
Query: 84 MLNEQDTAVKFFSNHLM------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
M+ +D F+ +LM VG+++ AYE+ + + G PD+YTY ++ G C+
Sbjct: 366 MMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRAN 425
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFN 180
R ++A +LL E G +VVT ++ L G+ +T +
Sbjct: 426 RIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCS 485
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK---KLDQ 223
+I LC ++ A LL M +G P ++ +LI K DQ
Sbjct: 486 TLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQ 531
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN--EQDTAVKFFSN 97
QA R +D+++ + ++N+I K + D + ALV +++ A +
Sbjct: 185 QAYRLLDEMEKRGIVPHNAVYNTIIK-----GLCDNGRVDSALVHYRDMQRNCAPSVITY 239
Query: 98 HLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
++V R+ +A +L ++ G P+V TY +++GFCK+G +EA+ L N+ +E
Sbjct: 240 TILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLE 299
Query: 152 RGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHK 194
+ +V T +LLQ + + G P IT+N ++ +L GK
Sbjct: 300 NSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYID 359
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A L +M PS + +++I
Sbjct: 360 AFNLAQMMLRRDCKPSHFTFNLMI 383
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+EAYE+ +K G P V TY ++D CKV R +EA+ LL E +E
Sbjct: 603 DEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLL-EVMESD----------- 650
Query: 165 LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P T+T+N+V + KA L M G P+ + +L+ KL
Sbjct: 651 ------GCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKL 701
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+ E +++ +K+ G +V +N L+ L V R++EA
Sbjct: 597 CKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCK----------------VSRLDEA 640
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+L +++DG PD TY ++ DGF K ++A L RG + LL +
Sbjct: 641 IHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTK 700
Query: 168 L 168
L
Sbjct: 701 L 701
>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A L + G+KPD TYT +MD FCK G + +LL E
Sbjct: 464 GRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSD--------- 514
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
GHIP +T+N ++ LC +G++ A +LL M G +P +++ L++
Sbjct: 515 ---------GHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLE 563
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------ 165
GL+PD TYT ++DGFC+ G + A+E+ E + G+ + V L+
Sbjct: 410 GLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDA 469
Query: 166 -----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+ L G P +T+ ++ A C G LL M G IP+ ++++L+
Sbjct: 470 ERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNG 529
Query: 221 L 221
L
Sbjct: 530 L 530
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+ I K +V FN L+ + + VG ++ + + +++
Sbjct: 262 VFDEITKRSLRPTVVSFNTLI----------------NGYCKVGNLDVGFRLKHHMEKSR 305
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
+PDV+TY+A+++ CK + + A L E ERG+ N V L+
Sbjct: 306 TRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMK 365
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L G P + +N ++ C G + A ++ M G P + ++ LI
Sbjct: 366 ESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLI 422
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ- 166
+ M + + G +VY + +M+ FCK G +A ++ +E +R + VV+ L+
Sbjct: 225 WGFYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLING 284
Query: 167 -----RLEMG-----HI------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L++G H+ P T++ +I ALC K+ A L + M E G IP+
Sbjct: 285 YCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPN 344
Query: 211 RTSHDMLI 218
LI
Sbjct: 345 DVIFTTLI 352
>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
Length = 475
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 36/199 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV-------------- 104
+FN + K V + L+ AL ++ + AV + L G V
Sbjct: 228 LFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLC 287
Query: 105 -----EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
EAY++L +K G PD+ Y ++ GFC+ GR+ +A ++L + G N+V
Sbjct: 288 RKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLV 347
Query: 160 TLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ L+ L EM G P N +I+ C VGKI +A ++ +
Sbjct: 348 SYRTLVGGLCDQGMFDEAKSHLEEMMMKGFSPHFAVSNALIKGFCNVGKIEEACGVVEEL 407
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+HG+ P + M++ ++
Sbjct: 408 LKHGEAPHTETWVMMVSRI 426
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ AY + + + PDV +Y +M C+ + N A++LL + + +G + ++
Sbjct: 220 GQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSY 279
Query: 162 IQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L G P I +N VI C G+ A +L M
Sbjct: 280 TTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDMES 339
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+G +P+ S+ L+ L Q
Sbjct: 340 NGCMPNLVSYRTLVGGLCDQ 359
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 32/179 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+ IF +I K N S N +L LV + Q+ ++ A+++ +
Sbjct: 155 LKIFYTILKFDCNPSPKHLNGILEILV--SHQNY-------------IKPAFDLFKDAHT 199
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR------ 167
+ P+ +Y ++ FC G+ + A L N+ +R V +V + L+Q L R
Sbjct: 200 YDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNG 259
Query: 168 --------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L G++P +++ ++ +LC K+ +A LL M G P ++ +I
Sbjct: 260 AVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVI 318
>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 602
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++E+A ++ + + G P+ Y+Y ++ GFCK+G +EAM+L + ++ G + ++
Sbjct: 345 MGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLS 404
Query: 161 LIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L + + IT+N +IQ C GK+ ++ LL +
Sbjct: 405 CNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQ 464
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
G PS +S+ LI+KL Q
Sbjct: 465 AKGLQPSTSSYAHLIQKLCQ 484
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 39/242 (16%)
Query: 16 LVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPL-KERIDIFNSIKKDGTNWSVSD 74
L+++ + P+ + + +P + ++ + L +E + F+ +K+ G V
Sbjct: 133 LLEAKACVPAKSFLYSFEFSPEPASLENYIRCVCEGGLVEEAVYTFDMLKEAGYRPYVET 192
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVG---------------------RVEEAYEMLMN 113
+N + + D K + + G +V AYE+L
Sbjct: 193 WNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCNDNKVSRAYEILRQ 252
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL--------- 164
DGL P + ++ GFCK + +EL++ I + ++ T ++
Sbjct: 253 SLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWM 312
Query: 165 -LQRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
LQ E+ G+ P + + +I C +G++ A L F M + G +P+ S++
Sbjct: 313 TLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNT 372
Query: 217 LI 218
LI
Sbjct: 373 LI 374
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A+E+ +K+ G PD+ YT ++ GFCK+G+ +A +L E I++G
Sbjct: 315 QAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGF----------- 363
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P ++N +I C +G + +A+ L M + G + S + LI
Sbjct: 364 -------LPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLI 409
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +EAY+ + + DV TY ++ GFC+ G+ ++ +LL E +G+
Sbjct: 416 GRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQ------ 469
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T ++ ++IQ LC +G + +A + M+ G P + D +I L
Sbjct: 470 ------------PSTSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGL 517
Query: 222 DQQ 224
+Q
Sbjct: 518 CEQ 520
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 36/180 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
K L E + ++ + G + N L++ L + D A FF
Sbjct: 378 CKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDV 437
Query: 97 ---NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
N L+ G +V ++ ++L ++ GL+P +Y ++ C++G EA E+ N+
Sbjct: 438 ITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWND 497
Query: 149 AIERGVTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGK 191
RG+ V T ++ L E G++ P+ TF +IQ+L +GK
Sbjct: 498 MHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSLIQIGK 557
>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
Length = 381
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 19/149 (12%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + F G + +A+E+ + G P+ TY+ I+ G K G+ +A+ELLNE
Sbjct: 195 NTIISFLCQK---GLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNE 251
Query: 149 AIERGVTQN---------------VVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKI 192
+G + + ++Q++ +L+ I P+T+ FN V+ LC GK
Sbjct: 252 MASKGYNTDKMYQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLFNTVLLVLCRNGKT 311
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A+ +L M +G +P ++ +LI+ L
Sbjct: 312 DYAIDVLADMVSYGCMPDELTYIILIEGL 340
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER--------- 152
G V++A E+L ++ + G KP+ Y ++ G C + R +A ELL+E +
Sbjct: 30 GDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIERWVDAEELLDEMVRENCPPNEATV 89
Query: 153 GVTQNVVTLIQLLQRL--------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
V N ++ LLQ++ + G +T+N VI +C G + AL LL M
Sbjct: 90 NVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGMCEQGHVDSALELLSNMQS 149
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ L+K L
Sbjct: 150 FGCKPDIVTYNTLLKGL 166
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A E+L N+++ G KPD+ TY ++ G C + +A EL+
Sbjct: 135 GHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELM--------------- 179
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I++ Q +P +TFN +I LC G I +A + M E G P+ T++ +I L
Sbjct: 180 IKMSQN---DCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGL 236
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E++ ++ +G +P+V TY I+D C+ G ++A ELLN RG
Sbjct: 2 ELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCK------------- 48
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
P T+ +N V++ LC + + A LL M P+ + ++++ L ++
Sbjct: 49 -----PNTVNYNTVLKGLCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRK 99
>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 733
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 21/133 (15%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T V S H G +EA E L + + D Y+AI+ FC+ GR ++A E++NE
Sbjct: 314 NTFVHMLSKH---GHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNE 370
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+G IP +T+ +VI LC K+ +A +L MY+HG
Sbjct: 371 MFSKGC------------------IPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCK 412
Query: 209 PSRTSHDMLIKKL 221
P+ S+ L+ L
Sbjct: 413 PNTVSYTALLNGL 425
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+++A E++ + + G PDV TYT++++G C+ + ++A ++L + + G N V+
Sbjct: 359 GRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSY 418
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L E IP IT++ ++ GK +A L+ M +
Sbjct: 419 TALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIK 478
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ ++LI+ L Q+
Sbjct: 479 KGFFPTPVEINLLIQSLCQE 498
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 17/110 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A +ML + G KP+ +YTA+++G CK G S EA E++N + E N +T
Sbjct: 395 KVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYS 454
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
L+ + ++ G P + N +IQ+LC K+ +A
Sbjct: 455 VLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEA 504
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 22/119 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA ++ M + GL P TY ++ +C++GR + ++LL + + R Q T
Sbjct: 569 GRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSR---QECRT- 624
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF-LMYEHGKIPSRTSHDMLIK 219
+N VI+ LC G + +A LL ++ KI + T H MLI+
Sbjct: 625 ----------------AYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCH-MLIE 666
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 74/177 (41%), Gaps = 35/177 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L+ + + ++K G +S N + LVM N D AV+F +V
Sbjct: 181 RAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVE------ 234
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++P+V TY ++ G+C + R +AMEL+ E +G +
Sbjct: 235 ----------IEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCS------------- 271
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK-IPSRTSHDMLIKKLDQQ 224
P I++ V+ LC +I + LL+ M + +P + +++ + L +
Sbjct: 272 -----PDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKH 323
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 20/101 (19%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
PDV TYT I+D K GR EA +L ++ L +G IP +T+
Sbjct: 553 PDVVTYTTIIDALGKKGRIEEATKL------------------AMKMLRVGLIPTPVTYR 594
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
VI C +G++ L LL M + RT+++ +I+KL
Sbjct: 595 TVIHQYCRMGRVEDLLKLLEKML--SRQECRTAYNQVIEKL 633
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA + + +++ N++ K+G +N +L + G+ +EA
Sbjct: 247 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL----------------HGYCSSGQPKEA 290
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
L +++DG++P+V TY+++M+ CK GRS EA ++ + +RG+ ++ T LLQ
Sbjct: 291 IGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 350
Query: 168 -------LEM----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+EM G P FN +I A K+ +A+L+ M +HG P+
Sbjct: 351 YATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPN 410
Query: 211 RTSHDMLIKKL 221
+ +I L
Sbjct: 411 VVCYGTVIDVL 421
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
I +S K+G DL++ + + + T + G+++EA ++L ++ + G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
+KPD+ TY +++G+C+V R ++A+ L E + GV+ N++T +LQ L H RT
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF--HTRRT 602
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 25/210 (11%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDT 90
L +N RS +A++ D + L+ I + ++ + T ++ + + LL +V Q
Sbjct: 316 LCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPD 375
Query: 91 AVKFFSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
F N L+ +V++A + ++ GL P+V Y ++D CK G ++AM
Sbjct: 376 HHVF--NILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLY 433
Query: 146 LNEAIERGVTQNVVTLIQL-----------------LQRLEMGHIPRTITFNNVIQALCG 188
+ I+ G+T N++ L L+ L+ G TI FN++I + C
Sbjct: 434 FEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCK 493
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G++ ++ L LM G P +++ LI
Sbjct: 494 EGRVIESEKLFDLMVRIGVKPDIITYNTLI 523
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 25/153 (16%)
Query: 94 FFSNHLMVG-----RVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
F N+L+ G R +EA E+L + +D G PDV +Y +++GF K G S++A
Sbjct: 164 FSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYST 223
Query: 146 LNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCG 188
+E ++RG+ +VVT ++ L + G +P +T+N+++ C
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 283
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G+ +A+ L M G P+ ++ L+ L
Sbjct: 284 SGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYL 316
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 22/122 (18%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++ + L NV G + D T+T ++ G C R+++AM++
Sbjct: 105 AGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI--------------- 149
Query: 161 LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH---GKIPSRTSHDM 216
+L+R+ E+G IP ++NN+++ LC + +AL LL +M + G P S++
Sbjct: 150 ---VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNT 206
Query: 217 LI 218
++
Sbjct: 207 VL 208
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------- 98
+++ SI K GT +S +N +L L N D A++ F N
Sbjct: 607 ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 666
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L GR++EA ++ +GL PDV TY+ + + + G E +L E G + +
Sbjct: 667 LKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADS 726
Query: 159 VTLIQLLQR-LEMGHIPRTITF 179
L ++++ L+ G I R T+
Sbjct: 727 RMLNSIVRKLLQRGDITRAGTY 748
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 83/202 (41%), Gaps = 36/202 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------------- 102
+F+ + + G + +N L+ + + D A K ++ + VG
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYC 562
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----- 154
R+++A + + + G+ P++ TY I+ G R+ A EL + G
Sbjct: 563 RVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELS 622
Query: 155 TQNVV-----------TLIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLM 202
T N++ +++ Q L + + T TFN +I AL G++ +A L
Sbjct: 623 TYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAH 682
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+G +P ++ ++ + L +Q
Sbjct: 683 SANGLVPDVRTYSLMAENLIEQ 704
>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ +A L + GLKPD TYT +MDGFCK G +LL E
Sbjct: 456 GKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSD--------- 506
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
GHIP IT+N ++ LC G++ A +LL M G +P ++++L++
Sbjct: 507 ---------GHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQ 555
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K +K+ IF+ I+K G + FN L+ + + G +EE
Sbjct: 243 CKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLI----------------NGYCKSGNLEEG 286
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+ + M ++ + PDV+TY+A++DG CK + +A L E +RG+ N VT L+
Sbjct: 287 FRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLING 346
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q G + +N +I LC G +A + M + G IP
Sbjct: 347 QCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPD 406
Query: 211 RTSHDMLI 218
+ ++ L+
Sbjct: 407 KFTYTTLL 414
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G EA + + + GL PD +TYT ++DG CK G A+E+ E ++ G+ + V
Sbjct: 386 GYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAF 445
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ + L G P T+ V+ C G + LL M
Sbjct: 446 TAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQS 505
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G IP ++++L+ L +Q
Sbjct: 506 DGHIPGVITYNVLMNGLCKQ 525
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A E + + + G P+VYT+ +M+ CK G+ +A + +E + G+
Sbjct: 216 ALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQ----------- 264
Query: 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
P ++FN +I C G + + L +M E P ++ LI L ++
Sbjct: 265 -------PTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKE 315
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 85/196 (43%), Gaps = 33/196 (16%)
Query: 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE 105
D + ++E +++F + SV +N ++ LV G
Sbjct: 85 DYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEY----------------GYFS 128
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A+++ M +K+ G+ PDVYT+T M FC GR A+ LLN +G N V+ ++
Sbjct: 129 QAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVI 188
Query: 166 -----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L+ G P +TFN +I LC G + ++ L + + G
Sbjct: 189 SGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVC 248
Query: 209 PSRTSHDMLIKKLDQQ 224
P+ + ++ I+ L ++
Sbjct: 249 PNLFTFNIFIQGLCRK 264
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 20/150 (13%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T VK S G V +A +++ ++ G PD++TY +++G CK+G ++A +LN+
Sbjct: 395 NTLVKGLSKQ---GLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILND 451
Query: 149 AIERGVTQNVVTLIQLL-----QR------------LEMGHIPRTITFNNVIQALCGVGK 191
AI +G ++ T L+ QR L G P IT+N ++ LC K
Sbjct: 452 AIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARK 511
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + M E G P+ ++++LI+
Sbjct: 512 LDNVVDTFKAMLEKGCTPNIITYNILIESF 541
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G ++EA +L ++ ++GL PDV +Y ++ GFCK + EA L++ + GV N
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTY 324
Query: 160 -TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T+I + M G IP T++++I LC G +++A+ + + E
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAME 384
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G S ++ L+K L +Q
Sbjct: 385 KGFKHSIILYNTLVKGLSKQ 404
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+ GR A +L N+ G + + +Y A++ GF K EA L +E +++G+ +++
Sbjct: 158 ITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDIL 217
Query: 160 TLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T +L+ L + G P TFN IQ LC G I +A LL +
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESI 277
Query: 203 YEHGKIPSRTSHDMLI 218
G P S++ LI
Sbjct: 278 VSEGLTPDVISYNTLI 293
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 34/165 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + + I+I +++ G V +N LL L + D V F L
Sbjct: 473 KQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAML--------- 523
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
G P++ TY +++ FCK + +EAMEL E RG+T ++VTL L
Sbjct: 524 -------EKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTL---- 572
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
I LC G++ KA L + + K T+
Sbjct: 573 --------------ICGLCSNGELDKAYELFVTIEKEYKFSYSTA 603
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 38/185 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
K + E +++F +K G + L+ L E D A + F
Sbjct: 543 KDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYST 602
Query: 98 ---HLMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
++M+ V A ++ + PD YTY ++D +CK G + A L E
Sbjct: 603 AIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLE 662
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
I +G+ +P T V+ LC ++ +A++++ LM ++G +
Sbjct: 663 NISKGL------------------VPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIV 704
Query: 209 PSRTS 213
P +
Sbjct: 705 PEEVN 709
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A + G K + Y ++ G K G +A++L+ + +E G + ++ T
Sbjct: 370 GDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTY 429
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L G IP TFN +I C + KA+ +L M
Sbjct: 430 NLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLS 489
Query: 205 HGKIPSRTSHDMLIKKL 221
HG P +++ L+ L
Sbjct: 490 HGITPDVITYNTLLNGL 506
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 104/250 (41%), Gaps = 44/250 (17%)
Query: 16 LVDSPSRSPSAAESLDL--KENPRSLQAQRF-----VDKI-KASPLKERIDIFNSIKKDG 67
+V+ RS + +LDL K R+++A F +D + + + I +F ++ G
Sbjct: 189 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 248
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------------HLMVGRVEEAY 108
SV +N L+ L + + + + G+++EA
Sbjct: 249 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 308
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + G+ P++ TY +MDG+C R +EA +L+ + + ++VT L++
Sbjct: 309 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 368
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
M G + +T++ ++Q C GKI A L M HG +P
Sbjct: 369 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDV 428
Query: 212 TSHDMLIKKL 221
++ +L+ L
Sbjct: 429 MTYGILLDGL 438
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA ++ + +G +PDV TY +I++G C+ G ++ A++LL + ER V +V T
Sbjct: 162 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 221
Query: 162 ----------------IQLLQRLEMGHIPRT-ITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L + +E I + +T+N++++ LC GK + LLL M
Sbjct: 222 STIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 281
Query: 205 HGKIPSRTSHDMLI 218
+P+ + ++L+
Sbjct: 282 REIVPNVITFNVLL 295
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA---------------- 91
+K L+E +++ + G + ++ +N L+ M N A
Sbjct: 299 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 358
Query: 92 VKFFS---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
V F S + MV RV++ ++ N+ GL + TY+ ++ GFC+ G+ A EL E
Sbjct: 359 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 418
Query: 149 AIERGVTQNVVTLIQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGK 191
+ GV +V+T LL L + G + + + + +I+ +C GK
Sbjct: 419 MVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK 478
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A L + G P+ ++ ++I L ++
Sbjct: 479 VEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKK 511
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 32/204 (15%)
Query: 44 FVDKIKASPLKERIDI---FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM 100
F + I++ PL +D F++I + FN +L L A ++ ++M
Sbjct: 66 FQEMIRSRPLPSLVDFSRFFSAIAR------TKQFNLVLDFCKQLELNGIAHNIYTLNIM 119
Query: 101 VG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + AY +L V G +PD T+ ++ G G+ +EA+ L++ +E G
Sbjct: 120 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 179
Query: 155 TQNVVTL----------------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALL 197
+VVT + LL+++E ++ + T++ +I +LC G I A+
Sbjct: 180 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 239
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
L M G S +++ L++ L
Sbjct: 240 LFKEMETKGIKSSVVTYNSLVRGL 263
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+A+ + ++ G+KP+V TYT ++ G CK G +EA LL + E G N T
Sbjct: 477 GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 536
Query: 162 IQLLQ 166
L++
Sbjct: 537 NTLIR 541
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171
G+ P+ TY++++DGFCK R +EA ++L+ + +G + L L+++ G
Sbjct: 729 GIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKGDSDIRYLLAGLMRKKRKG 782
>gi|302755288|ref|XP_002961068.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
gi|300172007|gb|EFJ38607.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
Length = 461
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 33/179 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA LK I +F + + G + + +N L L S H G A
Sbjct: 202 LKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGL-------------SRH---GLWRFA 245
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT------- 160
Y++L + DG+ PDV T+ ++++G + R + A+ L+ E + RG N +T
Sbjct: 246 YKLLPRMNQDGVLPDVVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKW 305
Query: 161 ---------LIQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
++L QR L+ P T+N V+ ALC G++ +A L +M P
Sbjct: 306 LARNARTDECVELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTP 364
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 36/181 (19%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-------------------R 103
+ +DG V FN L+ LV N AV + G R
Sbjct: 252 MNQDGVLPDVVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNAR 311
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E E+ + + L P+VYTY +M CK GR ++A L + T
Sbjct: 312 TDECVELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTP------- 364
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P IT+ +I LC ++ +A+LLL M + G P + ++ +
Sbjct: 365 ----------PNAITYRALIHGLCLKMELERAVLLLDAMAKRGCAPDVACYGTIVAAFCK 414
Query: 224 Q 224
Q
Sbjct: 415 Q 415
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 83/208 (39%), Gaps = 36/208 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------FSNHLMVG--- 102
L+ I++ + ++G+ S+ D N L L D A++F FS V
Sbjct: 32 LRATIELLKDMAENGSTLSIQDLNGCLRGLCKAGNVDGALEFLREAKNSFSLRASVSTYS 91
Query: 103 ----------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
R +A E+L +++ GL+ D TY+ I+ CK G ++A L+ I R
Sbjct: 92 ILVAALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLVERMISR 151
Query: 153 GV----------------TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
T V +++ + + H +T+N+++ ++ + +
Sbjct: 152 NCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAKHCTSVVTYNSLVLGFLKARRLKRGI 211
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ M G P ++++L + L +
Sbjct: 212 KVFTRMARTGPSPDIYTYNILFEGLSRH 239
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 23/130 (17%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L++G R++ ++ + G PD+YTY + +G + G A +LL +
Sbjct: 195 NSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQ 254
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
GV +P +TFN++I L + H+A+ L+ M G P+
Sbjct: 255 DGV------------------LPDVVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNA 296
Query: 212 TSHDMLIKKL 221
++ +L+K L
Sbjct: 297 ITYTILLKWL 306
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E A +L + G PDV Y I+ FCK GR +EA ELL G TL++
Sbjct: 383 LERAVLLLDAMAKRGCAPDVACYGTIVAAFCKQGRIDEAFELLERMPFAGDKVMFRTLVR 442
Query: 164 LLQRLEMGHIPRTITFNNV 182
L +L++ I+ + +
Sbjct: 443 ALCKLQLRSFSEQISCDEI 461
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA-----IERGVTQ 156
G + E+L ++ +G + + G CK G + A+E L EA + V+
Sbjct: 30 GNLRATIELLKDMAENGSTLSIQDLNGCLRGLCKAGNVDGALEFLREAKNSFSLRASVST 89
Query: 157 NVVTL------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ + ++LL+++E +G T++ +I +LC G + KA +L+ M
Sbjct: 90 YSILVAALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLVERMI 149
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
+P +D +I++L +
Sbjct: 150 SRNCVPDARIYDPVIEELSK 169
>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 376
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 33/188 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K S L++ + + N + + G + +N L+ L+ +++D AV+ F +G +
Sbjct: 141 KESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIFRE---MGTTD--- 194
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
P++ TY+ ++DG CK R EA +L+ E +E+G+ +V+T L++ L
Sbjct: 195 ----------CPPNIATYSILIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGL 244
Query: 169 EMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+GH P N +I LC VGK AL L M P+
Sbjct: 245 CLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCAPNL 304
Query: 212 TSHDMLIK 219
+ + L++
Sbjct: 305 VTQNTLME 312
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 35/173 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A +K+ +++ + ++G+ SV+ FN ++ L F N +VEEA
Sbjct: 37 RAGRMKDCFELWEMMGREGSR-SVASFNIMMRGL------------FDNR----KVEEAM 79
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ + G D TY ++ GFCK G N+++ +L A ++
Sbjct: 80 SIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEIAEQK---------------- 123
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G + ++ +I ALC K+ KA+ +L M G P+ ++ LIK L
Sbjct: 124 --GGVLDAFAYSAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGL 174
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + ++ + PD Y A+++GF + GR + EL E + R +++V +
Sbjct: 4 GDIDGAERVYKDIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELW-EMMGREGSRSVASF 62
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++ L + G + ++T+ ++ C G I+K+L +L + +
Sbjct: 63 NIMMRGLFDNRKVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEIAEQ 122
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G + ++ +I L ++
Sbjct: 123 KGGVLDAFAYSAMINALCKE 142
>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K ++E + ++ ++ S+ FN L+ F N +V EA
Sbjct: 442 VKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYG------------FCKNR----KVVEA 485
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------ 161
+L ++K GL+P TYT +M+ +C+ G N+ ELL E + + VVT
Sbjct: 486 RRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKG 545
Query: 162 ----------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+QLL+ + G P IT+N +IQ C + KA LL M H P+
Sbjct: 546 LCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPT 605
Query: 211 RTSHDMLIKKL 221
++++LI L
Sbjct: 606 PATYNVLIDGL 616
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 32/194 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
I A ++E +++ N ++K G M+ + A F LM G E
Sbjct: 231 IVAGSMEEALELTNDMEKQGLQPD------------MVTYKIVAKGFHLLGLMSGAREII 278
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------ 161
+ML ++GLKPD+ TYT ++ G C++G EA+ L + + G NV+
Sbjct: 279 QKML---TDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSS 335
Query: 162 ----------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+QLL +E ++ P +T++ +I LC GK+ +A+ L M + P+
Sbjct: 336 LCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPN 395
Query: 211 RTSHDMLIKKLDQQ 224
+H ++K L ++
Sbjct: 396 SFAHSGILKGLCEK 409
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
++ +G VEEA + +++ + P + T+ +++ GFCK + EA LL G+
Sbjct: 440 GYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEP 499
Query: 157 NVVTLIQLLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLL 199
+ VT L+ E G+I P +T+ VI+ LC K+ +++ LL
Sbjct: 500 SAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLL 559
Query: 200 FLMYEHGKIPSRTSHDMLIK 219
M G P + +++ +I+
Sbjct: 560 EDMRAKGLAPDQITYNTIIQ 579
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 79/169 (46%), Gaps = 28/169 (16%)
Query: 34 ENPRSLQAQRFVDKIKASPLK----ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
+N + ++A+R ++ IK L+ + N+ ++G +++ ++LL+ + + + +
Sbjct: 478 KNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEG---NINKLHELLLEMNLKDIEP 534
Query: 90 TAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
T V + ++EE+ ++L +++ GL PD TY I+ FCK +A ELL
Sbjct: 535 TVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELL 594
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
++ L+ LE P T+N +I LC G + A
Sbjct: 595 DD--------------MLIHNLE----PTPATYNVLIDGLCRYGDVEDA 625
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 17/123 (13%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LI------------- 162
L+PDV Y ++DG+ K+G EA+ L ++ +T ++VT LI
Sbjct: 427 LRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEAR 486
Query: 163 QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+LL+ +++ G P +T+ ++ A C G I+K LL M P+ ++ ++IK L
Sbjct: 487 RLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGL 546
Query: 222 DQQ 224
+Q
Sbjct: 547 CKQ 549
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 43/181 (23%)
Query: 58 DIFNSIKKDGTNWSV-------------SDFNDLLMALVMLNEQD------TAVKF---F 95
D++N IK GT S S F D A++ L + D + V F
Sbjct: 136 DVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRD---AVLFLRQNDGKEFAPSVVSFNTIM 192
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S + +G + A + G+ PD Y+Y ++ G G EA+EL N+ ++G+
Sbjct: 193 SRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQ 252
Query: 156 QNVVTLI----------------QLLQRL--EMGHIPRTITFNNVIQALCGVGKIHKALL 197
++VT +++Q++ + G P +T+ +I C +G I +AL
Sbjct: 253 PDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALR 312
Query: 198 L 198
L
Sbjct: 313 L 313
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V++A ++ + + + P+ + ++ I+ G C+ G ++A + I + +V
Sbjct: 375 GKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLY 434
Query: 162 ----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++L +RL I P +TFN++I C K+ +A LL +
Sbjct: 435 NIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKL 494
Query: 205 HGKIPSRTSHDMLI 218
HG PS ++ L+
Sbjct: 495 HGLEPSAVTYTTLM 508
>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 108 YEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+E ++N +D KP V +Y+ I+D CK G A E E E+G+ NVVT L
Sbjct: 235 HEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSL 294
Query: 165 LQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L L EM G +P +TF+ +I ALC VGK+ +A L LM +
Sbjct: 295 LHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYV 354
Query: 208 IPSRTSHDMLIK 219
PS ++++LI+
Sbjct: 355 EPSTRTYNILIE 366
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E +D+F ++ +V+ FN L+ + ++E A+
Sbjct: 468 KNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSE----------------KLEIAW 511
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + N+ L+PDV TYT ++ G CKVG+ +A +L E E+G NVVT L++ L
Sbjct: 512 ELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGL 571
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 52/166 (31%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VE A E + +K G+ P+V TYT+++ G C EA L E ++ G+ +VVT
Sbjct: 267 GLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTF 326
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVG-------------- 190
L+ L ++G + P T T+N +I+ C G
Sbjct: 327 SVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVN 386
Query: 191 ---------------------KIHKALLLLFLMYEHGKIPSRTSHD 215
++H A++L M + G P+ ++
Sbjct: 387 KRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYS 432
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 42/211 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALV-------------MLNEQDTAVKFFSNHL 99
L E + FN + T ++S FN+L AL +N F S ++
Sbjct: 88 LHEALHFFNQMIHMQTTPALSRFNNLFGALAKKKQYLHVISMCGRMNSIGLLKNFISLNI 147
Query: 100 M------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN------ 147
+ V RV E + + + G +P+ T+T ++ G C G+ EA+ +
Sbjct: 148 LLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFD 207
Query: 148 ---EAIERGV-------TQNVVTLIQLLQRLEMGHI-------PRTITFNNVIQALCGVG 190
AI GV T N ++L + + G+ P ++++ +I +LC G
Sbjct: 208 CRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDG 267
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +A M E G P+ ++ L+ L
Sbjct: 268 LVERAKEFFVEMKEKGIFPNVVTYTSLLHGL 298
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA ++ ++N +V + ++++G C+ + A EL N +
Sbjct: 470 GCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQ------ 523
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ +I LC VG+ KA L M E G P+ + + L++ L
Sbjct: 524 ------------PDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGL 571
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ + G V+E ++ +++ N + D +Y+ +M +CK + AM L E ++RG+
Sbjct: 368 YCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPT 427
Query: 158 VVTLIQL-----------LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V+T ++ Q + + I +I +N + LC G + +AL + +
Sbjct: 428 VITYSKVGDARKLFGEIQFQDMVLDSISYSI-YNVYLDGLCKNGCVSEALDVFY 480
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EA ++ + G KPDV++Y +++G+CK R EA +L NE I +G+T
Sbjct: 383 VVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLT-------- 434
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P +++N +I LC +G++ +A L M +G +P ++ +L+ +
Sbjct: 435 ----------PDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCK 484
Query: 224 Q 224
Q
Sbjct: 485 Q 485
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 37/185 (20%)
Query: 55 ERID----IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
+R+D + I K G ++ FN L+ L + + AV+ F + MV R
Sbjct: 171 QRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDD--MVAR------- 221
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-- 168
G +PDV+TYT I++G CK+G + A L + E G +VVT ++ L
Sbjct: 222 -------GYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCK 274
Query: 169 ---------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
G P T+N++IQ LC + +A +L M +P+ +
Sbjct: 275 DRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVT 334
Query: 214 HDMLI 218
+LI
Sbjct: 335 FSLLI 339
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSN--------------HLMVG------RVEEAYEM 110
+ FN LL A+V + AV S H+++ RV+ + +
Sbjct: 120 CIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSV 179
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-- 168
L + GL+ + T+ +++G CKVG+ +A+EL ++ + RG +V T ++ L
Sbjct: 180 LAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCK 239
Query: 169 ---------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
E G P +T++ +I +LC ++++AL + M G P+ +
Sbjct: 240 IGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFT 299
Query: 214 HDMLIKKL 221
++ LI+ L
Sbjct: 300 YNSLIQGL 307
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + E +FN + G + +N L+ L L GR+ EA+
Sbjct: 414 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQL----------------GRLREAH 457
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLL 165
++ N+ +G PD+ TY+ ++DGFCK G +A L + N+V LI +
Sbjct: 458 DLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAM 517
Query: 166 QR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ G P + +I LC G + +AL M E G P+
Sbjct: 518 CKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNE 577
Query: 212 TSHDMLIKKLDQQ 224
S++++I+ Q
Sbjct: 578 FSYNVIIRGFLQH 590
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 36/206 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
K + +++F+ + G V + ++ L + E A F G
Sbjct: 204 KVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVV 263
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
RV EA ++ +K G+ P+++TY +++ G C R EA +LNE
Sbjct: 264 TYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 323
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
+ + N+VT L+ EMG P +T+++++ ++
Sbjct: 324 MSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEV 383
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+A L +M G P S+++LI
Sbjct: 384 VEARKLFDVMITKGCKPDVFSYNILI 409
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++EA E N++ DG P+ ++Y I+ GF + + A++L+ E E+G +V T
Sbjct: 556 GLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614
>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
barbata]
Length = 429
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 33/154 (21%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G + E + + + G
Sbjct: 162 VFDAIAKWGLRPSVVSYNTLM----------------NGYIRLGDLNEGFRLKSAMLASG 205
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 206 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAM 265
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
Q L +P IT+N +I LC G + +A
Sbjct: 266 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 299
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLK D TYT ++DG CK G + A E I+ + + V
Sbjct: 294 GDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAY 353
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ +I C G + K LL M
Sbjct: 354 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQR 413
Query: 205 HGKIPSRTSHDMLI 218
+G PS ++++L+
Sbjct: 414 NGHAPSVVTYNVLM 427
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A + + GL+P V +Y +M+G+ ++G NE L + + GV +V T
Sbjct: 154 GDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTY 213
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P +TF +I C G++ A+ + M
Sbjct: 214 SVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS 273
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+P +++ LI L ++
Sbjct: 274 QSLLPDLITYNTLIYGLCKK 293
>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 34/180 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I +FNS+K +G FN L+ A + G V++A + ++
Sbjct: 425 IGLFNSMKSNGIAADCRVFNILIHA----------------YAKRGMVDDAMLIFTEMQQ 468
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM------ 170
G+ PDV TY+ ++ F ++GR +AME N+ + RG+ N ++Q M
Sbjct: 469 QGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVK 528
Query: 171 ----------GHIPR--TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IPR + FN+VI +LC G++ A + L+ + G+ P + LI
Sbjct: 529 AKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLI 588
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 59/110 (53%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ NS+ KDG D DL+ + + T + +VG++++A+++L ++ G
Sbjct: 552 VINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVG 611
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ D+ TY+ ++DG+ K GR N+ + L E +GV N VT +L L
Sbjct: 612 VETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGL 661
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A+++ V + G +PDV T+T+++DG+C VG+ ++A ++L+ GV ++VT
Sbjct: 560 GRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTY 619
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LL G+ F N G+I+ L L M G P+ ++ +++ L
Sbjct: 620 STLLD----GY------FKN--------GRINDGLTLFREMQRKGVKPNTVTYGIMLAGL 661
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 17/144 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ +GR++EA +M +K+ GL P++ + + CK GRS EA E+ + +G
Sbjct: 344 GYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKP 403
Query: 157 NVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLL 199
++V+ LL G FN +I A G + A+L+
Sbjct: 404 DIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIF 463
Query: 200 FLMYEHGKIPSRTSHDMLIKKLDQ 223
M + G P ++ +I +
Sbjct: 464 TEMQQQGVSPDVVTYSTVISAFSR 487
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
Q TA R EEA +L++ ++ G P+V++Y+ I+ G C S A++L
Sbjct: 191 HQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDL 250
Query: 146 LNEAIERG--VTQNVV---TLIQ-LLQRLEMGHI-------------PRTITFNNVIQAL 186
+ G + NVV T+I + E G P +T+N +I AL
Sbjct: 251 FQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDAL 310
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
C + KA L+L M +G P +++ +I
Sbjct: 311 CKARAMDKAELVLRQMTTNGAQPDTVTYNCMI 342
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 36/200 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK-------------------FFSNH 98
DIF+ + G V F L+ ++ + D A K +
Sbjct: 567 DIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGY 626
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
GR+ + + ++ G+KP+ TY ++ G + GR+ A + +E IE G T V
Sbjct: 627 FKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTV 686
Query: 159 VTL----------------IQLLQRLEMGHIPRTIT-FNNVIQALCGVGKIHKALLLLFL 201
I L Q+L ++ +IT N +I A+ V + +A L
Sbjct: 687 SIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFAT 746
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
+ G +P+ +++ ++I L
Sbjct: 747 ISASGLLPNESTYGVMIINL 766
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+K ++ M R + ++M M + P+V Y ++ GF K G + +A L +E
Sbjct: 235 LKGLCDNSMSQRALDLFQM-MAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTR 293
Query: 152 RGVTQNVVTL-----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
+GV +VVT + L Q G P T+T+N +I +G++ +
Sbjct: 294 QGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKE 353
Query: 195 ALLLLFLMYEHGKIPS 210
A + M G IP+
Sbjct: 354 AAKMFRKMKSRGLIPN 369
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 39/183 (21%)
Query: 57 IDIFNSIKKDGTNWS--VSDFNDLLMALVMLNEQDTAVKFF-------------SNHLMV 101
+D+F + K+G S V +N ++ E A F + +L++
Sbjct: 248 LDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLII 307
Query: 102 GRVEEAYEM------LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ +A M L + +G +PD TY ++ G+ +GR EA ++ + RG+
Sbjct: 308 DALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGL- 366
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
IP + N+ + +LC G+ +A + M G P S+
Sbjct: 367 -----------------IPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYC 409
Query: 216 MLI 218
L+
Sbjct: 410 TLL 412
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 33/172 (19%)
Query: 65 KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
K G SVS +N L+ AL M GR+ EA +M+ ++ G+ PD
Sbjct: 382 KKGIMPSVSTYNLLVHAL----------------FMEGRMGEADDMIKEMRKKGIIPDAI 425
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR-------------- 167
TY +++G+ + G + +A +L NE + +G+ VT LI +L R
Sbjct: 426 TYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKI 485
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
L+ G P I FN ++ C G + +A +LL M P + + L++
Sbjct: 486 LDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQ 537
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A +L ++ G++PD YTY +++ G CK GR EA L ++ +E
Sbjct: 298 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVE---------- 347
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+G +P +T+N +I C G + +A M + G +PS +++++L+ L
Sbjct: 348 --------IGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 399
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 41/232 (17%)
Query: 15 LLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNSIKKD 66
+L++ SR +A ++ DL P + + + + + +KE D+F I
Sbjct: 429 ILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQ 488
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G + V FN ++ H G VE A+ +L + + PD T+
Sbjct: 489 GVSPDVIMFNAMV----------------DGHCANGNVERAFMLLKEMDRKSVPPDEVTF 532
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQR--------------LE 169
+M G C+ G+ EA LL+E RG+ + + TLI R L
Sbjct: 533 NTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLS 592
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+G P +T+N +I+ LC + A LL M G P +++ LI+ +
Sbjct: 593 IGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 644
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 41 AQRFVDKIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
A+R +D ++ ++ + S+ K+G S D ++ + ++ T
Sbjct: 303 ARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLID 362
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ G +E A+ + G+ P V TY ++ GR EA +++ E ++G+
Sbjct: 363 GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI-- 420
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
IP IT+N +I G KA L M G P+ ++
Sbjct: 421 ----------------IPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTS 464
Query: 217 LIKKLDQQ 224
LI L ++
Sbjct: 465 LIYVLSRR 472
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 26/167 (15%)
Query: 78 LLMALVMLNE---QDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTA 128
+L AL M+NE + ++ +L++ G V +A ++ + G PDV+T+
Sbjct: 407 ILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNT 466
Query: 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMG 171
++DG+CK + +++LN+ GVT +V+T +L L E G
Sbjct: 467 LIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKG 526
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P IT+N + ++LC GK+++AL L+ + G P S +I
Sbjct: 527 CVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATII 573
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ ++E +D+F + SV +N ++ LV G ++A+
Sbjct: 88 RKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVE----------------SGYFKQAH 131
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
++ + +KN G+ PDVYT+T + FC+ R + A+ LLN + +G N V ++
Sbjct: 132 KVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGF 191
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
L +G P TFN ++ LC G++ ++ LL + + G +
Sbjct: 192 YEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNL 251
Query: 212 TSHDMLIKKLDQQ 224
+ ++ I+ L ++
Sbjct: 252 FTFNIFIQGLCRK 264
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A +M+ + +G D++TY +++G CK+G ++A L+N+AI +G +V T
Sbjct: 405 GLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTF 464
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
IQ+L ++ G P IT+N+V+ L K + M E
Sbjct: 465 NTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVE 524
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P++ ++++L + L
Sbjct: 525 KGCVPNKITYNILTESL 541
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EA + L + N GL+PD +TY ++DG+CK+G A ++L AI +G
Sbjct: 302 VVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGF--------- 352
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+P T+ ++I LC +I +AL L G P+ ++MLIK L Q
Sbjct: 353 ---------VPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQ 403
Query: 224 Q 224
+
Sbjct: 404 E 404
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ + + G PD YTY ++DGFC G ++ + L E IE+G
Sbjct: 623 KLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGF-------------- 668
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
IP TF VI LC ++H+A+ ++ M +G +P
Sbjct: 669 ----IPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVP 705
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 33/186 (17%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E ++FN + + G VS FN LL L G V+E+ +L V
Sbjct: 199 EAYELFNDMLRIGIFPDVSTFNKLLHTLCK----------------KGEVQESERLLNKV 242
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL---------- 164
G+ +++T+ + G C+ G + AM +L+ I G+T +VVT L
Sbjct: 243 LKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNV 302
Query: 165 ------LQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
L +L G + P T+N +I C +G + A +L G +P ++ L
Sbjct: 303 VEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSL 362
Query: 218 IKKLDQ 223
I L Q
Sbjct: 363 INGLCQ 368
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 18/124 (14%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ +G ++ A ++L G PD +TY ++++G C+ + A+ L N A+ +G+
Sbjct: 331 YCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLK-- 388
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
P I +N +I+ LC G I +AL ++ M E+G +++++
Sbjct: 389 ----------------PTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLV 432
Query: 218 IKKL 221
I L
Sbjct: 433 INGL 436
>gi|449442465|ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Cucumis sativus]
gi|449505643|ref|XP_004162530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Cucumis sativus]
Length = 475
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 19/139 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G +++A E++ + + + P++ TY +++ GFC VGR +A L + E G N V
Sbjct: 178 GEMDKAMELMKEMDSVDIHPNMITYISMLKGFCDVGRWEDAYGLFKDMKENGCAPNTVVY 237
Query: 161 ---------------LIQLLQRLE-MGHI--PRTITFNNVIQALCGVGKIHKALLLLFLM 202
L+++L+ +E G P T+T+ ++IQ+LC G +AL +L M
Sbjct: 238 SVLVNGAIRLRIMDRLMEMLKEMEKQGGTCSPNTVTYTSIIQSLCEEGHPLEALKVLDRM 297
Query: 203 YEHGKIPSRTSHDMLIKKL 221
E+G P+R + L+K+
Sbjct: 298 EEYGYAPNRVAVSFLVKEF 316
>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 952
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+H GRV E+ ++ + G+KPD+ TY+ ++DG+C G+ +EAM+LL+ + G+
Sbjct: 252 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLK- 310
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P T+T++ +I C + ++ AL+L M G P ++++
Sbjct: 311 -----------------PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 353
Query: 217 LIKKLDQ 223
+++ L Q
Sbjct: 354 ILQGLFQ 360
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 37/162 (22%)
Query: 94 FFSNHLMVG-----RVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
F N+L+ G R +EA E+L + +D G PDV +YT +++GF K G S++A
Sbjct: 159 FSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYST 218
Query: 146 LNEAIERGVTQNVVTLIQLLQRLEMGHI-----------------------------PRT 176
+E ++RG+ +VVT ++ L G P
Sbjct: 219 YHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDI 278
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IT++ +I C GK+ +A+ LL M G P+ ++ LI
Sbjct: 279 ITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 320
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 17/128 (13%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
DL++ + + + T + + G+++EA ++L + + GLKP+ TY+ +++G+CK+
Sbjct: 267 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKI 326
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITF 179
R +A+ L E GV+ +++T +LQ L E G T+
Sbjct: 327 SRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 386
Query: 180 NNVIQALC 187
N ++ LC
Sbjct: 387 NIILHGLC 394
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 22/122 (18%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++ + L NV G + + T+T ++ G C R+++AM++
Sbjct: 100 AGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDI--------------- 144
Query: 161 LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE---HGKIPSRTSHDM 216
+L+R+ E+G IP ++NN++ LC + +AL LL +M + G P S+
Sbjct: 145 ---VLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTT 201
Query: 217 LI 218
+I
Sbjct: 202 VI 203
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 36/202 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------------- 102
+F+ + + G + ++ L+ + + D A+K S + VG
Sbjct: 265 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 324
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----- 154
R+E+A + +++ G+ PD+ TY I+ G + R+ A EL E G
Sbjct: 325 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 384
Query: 155 TQNVV-----------TLIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLM 202
T N++ +Q+ Q L + + TFN +I AL VG+ +A L
Sbjct: 385 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 444
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+G +P+ ++ ++ + + Q
Sbjct: 445 SSNGLVPNYWTYRLMAENIIGQ 466
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 21/106 (19%)
Query: 103 RVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLN-EAIERGVTQ--NV 158
R +A ++++ + G P+V++Y +++G C RS EA+ELL+ A +RG +V
Sbjct: 137 RTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDV 196
Query: 159 VTLIQLL-----------------QRLEMGHIPRTITFNNVIQALC 187
V+ ++ + L+ G +P +T++++I ALC
Sbjct: 197 VSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALC 242
>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
Length = 735
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 104/250 (41%), Gaps = 44/250 (17%)
Query: 16 LVDSPSRSPSAAESLDL--KENPRSLQAQRF-----VDKI-KASPLKERIDIFNSIKKDG 67
+V+ RS + +LDL K R+++A F +D + + + I +F ++ G
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------------HLMVGRVEEAY 108
SV +N L+ L + + + + G+++EA
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 318
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + G+ P++ TY +MDG+C R +EA +L+ + + ++VT L++
Sbjct: 319 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
M G + +T++ ++Q C GKI A L M HG +P
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDV 438
Query: 212 TSHDMLIKKL 221
++ +L+ L
Sbjct: 439 MTYGILLDGL 448
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA ++ + +G +PDV TY +I++G C+ G ++ A++LL + ER V +V T
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 231
Query: 162 ----------------IQLLQRLEMGHIPRT-ITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L + +E I + +T+N++++ LC GK + LLL M
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 291
Query: 205 HGKIPSRTSHDMLI 218
+P+ + ++L+
Sbjct: 292 REIVPNVITFNVLL 305
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA---------------- 91
+K L+E +++ + G + ++ +N L+ M N A
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368
Query: 92 VKFFS---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
V F S + MV RV++ ++ N+ GL + TY+ ++ GFC+ G+ A EL E
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428
Query: 149 AIERGVTQNVVTLIQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGK 191
+ GV +V+T LL L + G + + + + +I+ +C GK
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK 488
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A L + G P+ ++ ++I L ++
Sbjct: 489 VEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKK 521
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+A+ + ++ G+KP+V TYT ++ G CK G +EA LL + E G N T
Sbjct: 487 GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546
Query: 162 IQLLQ 166
L++
Sbjct: 547 NTLIR 551
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----- 161
AY +L V G +PD T+ ++ G G+ +EA+ L++ +E G +VVT
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 201
Query: 162 -----------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ LL+++E ++ + T++ +I +LC G I A+ L M G
Sbjct: 202 GICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 261
Query: 210 SRTSHDMLIKKL 221
S +++ L++ L
Sbjct: 262 SVVTYNSLVRGL 273
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ A +L + + G PDV TYT ++D CKVGR ++A E+ E + + NVVT
Sbjct: 236 GRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTY 295
Query: 162 IQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L+ EM P +T+N +I L V + +A + M E G
Sbjct: 296 SALIGGYCRASRVDEGGKVMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGF 355
Query: 208 IPSRTSHDMLIKKL 221
+P ++ L + L
Sbjct: 356 VPDARTYRGLKRAL 369
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 18/139 (12%)
Query: 101 VGRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+GRV+ A+++ V G +P+ +TY A++DG CK R + A ++ EA +R +VV
Sbjct: 59 LGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVV 118
Query: 160 T-----------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L Q E G++P ++FN +I LC ++ AL + M
Sbjct: 119 TYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEM 178
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ P+ ++ ++I L
Sbjct: 179 IDRDFHPNLVTYSVVIDGL 197
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GRV+EA + +G P + ++ AI+ G C+ R +A+E+ NE I+R N+VT
Sbjct: 130 LGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVT 189
Query: 161 LI----------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
QLL R+ G P + + ++ G++ AL LL M
Sbjct: 190 YSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMV 249
Query: 204 EHGKIPSRTSHDMLIKKL 221
G IP ++ ++I KL
Sbjct: 250 SQGCIPDVVTYTVVIDKL 267
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 19/140 (13%)
Query: 101 VGRVEEAYEML-MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NV 158
GRV +A E +++ +PDV +YT +++G CK+GR + A +L + + G + N
Sbjct: 23 CGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNA 82
Query: 159 VTLIQLL------QRLEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFL 201
T L+ RL+ P +T+N ++ AL +G++ +AL
Sbjct: 83 FTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQ 142
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M E G +P+ S + +I L
Sbjct: 143 MTEEGYVPTLVSFNAIITGL 162
>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
Length = 447
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 20/125 (16%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EAY++L+++ + G K D +Y ++ F GR+ +++ELL
Sbjct: 252 RLDEAYQVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLG--------------- 296
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL- 221
+ L G+I T T N VI C G +H+A L MY+ G IPS +++ LI
Sbjct: 297 ---RMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFC 353
Query: 222 -DQQP 225
QQP
Sbjct: 354 KAQQP 358
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 16/110 (14%)
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLL-------------QRL 168
+Y +M GFCK G +A+ELL+E GV NVV T+I+ L +R+
Sbjct: 32 SYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRI 91
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T++ ++ ALC G+ H+A L+ M + G P+ +++ LI
Sbjct: 92 GEDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALI 141
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 39/203 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE------------QDTAVKFF 95
KA ++ +++ + +K +G +V ++ L + +D A +
Sbjct: 41 CKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRRIGEDCAPNVY 100
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ +V G+ EAY ++ + G P+V TY A++DGF K+ R +E + LL E
Sbjct: 101 TYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEM 160
Query: 150 IERGVTQNVVTLI----------------QLLQRLEMGHIPRTITFNNVIQALCGV--GK 191
+RG +V+T +LL LE ++ +T+N++ AL +
Sbjct: 161 SQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNV---VTYNSLFTALSTAEGDR 217
Query: 192 IHKALLLLFLMYEHGKIPSRTSH 214
+AL LL M + G P++ ++
Sbjct: 218 TTEALSLLEKMIQEGTRPNQVNY 240
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-----VTQ 156
GR ++ E+L + G D T ++ FCK G +EA +L +RG VT
Sbjct: 286 GRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQRGSIPSNVTY 345
Query: 157 NVV-----------TLIQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
N + T ++LL Q ++ P IT+N++I++ C + +A + +M +
Sbjct: 346 NTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVD 405
Query: 205 HGKIPSRTSHDML 217
+G P R S+ L
Sbjct: 406 NGCFPDRVSYTTL 418
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 23/135 (17%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
R++E +L + G + DV TYT I+D FCK +EA LLN A+E+ +NVVT
Sbjct: 149 RLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLN-ALEK---RNVVTYN 204
Query: 162 -----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ LL+++ + G P + + V+ LC ++ +A +L MY
Sbjct: 205 SLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMY 264
Query: 204 EHGKIPSRTSHDMLI 218
G S+ +L+
Sbjct: 265 SQGCKTDDVSYKILV 279
>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
urticoides]
Length = 412
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 145 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 188
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + + A L +E + +G+ N VT L+
Sbjct: 189 VQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 248
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 249 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 305
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ + GLKPD +TYT ++DG CK G + A E I+ + + V
Sbjct: 277 GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 336
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ ++ C G + K LL M
Sbjct: 337 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQR 396
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 397 DGHAPSVVTYNVLM 410
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 124 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 183
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 184 MLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGR 243
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 244 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 276
>gi|147784775|emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera]
Length = 549
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +EEA +M+ ++ GLKPDVYTY+ IM G+ G EA +L+EA +N
Sbjct: 395 AGEMEEAMKMMKLMETRGLKPDVYTYSVIMSGYAHGGMMEEACRVLSEA-----KRNHSK 449
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
L +T++ +I+ C + + KA+ LL M EHG P+ ++ LI+
Sbjct: 450 L-------------SPVTYHTLIRGYCKLEQFDKAVELLGEMKEHGVQPNTDEYNKLIQS 496
Query: 221 L 221
L
Sbjct: 497 L 497
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A EML + + K + YTA++ G C+ + A L
Sbjct: 326 GTISMAVEMLDDFSGEECKYAIKPYTAVIRGLCRSKDVDGAKRL---------------- 369
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
LL+ +E G P FN VI L G++ +A+ ++ LM G P ++ +++
Sbjct: 370 --LLKMIEAGPPPGNAVFNFVINGLSKAGEMEEAMKMMKLMETRGLKPDVYTYSVIM 424
>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F+ I + G SV FN L+ S + VEE + + ++++
Sbjct: 248 VFDEISRRGLRPSVVSFNTLI----------------SGYCRSKNVEEGFVLKSVMESER 291
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL-------------L 165
+ PDV+TY+A+++G CK R EA L +E E G+ N VT L L
Sbjct: 292 ISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLAL 351
Query: 166 QRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ E+ G P IT+N +I LC G + +A LL M +G P + + L+
Sbjct: 352 RNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLM 408
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA ++L + +G KPD T+T +MDG CK G + A+E+ + +E G+ + V
Sbjct: 380 GDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAF 439
Query: 162 IQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L GH P T+ VI C G + LL M
Sbjct: 440 TALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQR 499
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G++P +++ L+ +Q
Sbjct: 500 DGRVPGVVTYNALMNGFCKQ 519
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A ML ++ + G KPD TYT ++D FCK G +LL E
Sbjct: 450 GRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKE------------- 496
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+QR G +P +T+N ++ C G++ A +LL M +P+ + ++L+
Sbjct: 497 ---MQR--DGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILL 548
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+++ I +KK+ + V + LL ++ LN+Q +E +
Sbjct: 171 IEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLNQQPG---------------HCWEFYL 215
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------Q 166
V + G P+VY + +M GFCK+G A + +E RG+ +VV+ L+ +
Sbjct: 216 EVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSK 275
Query: 167 RLEMGHI-----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+E G + P T++ +I LC ++ +A L M E G +P+ +
Sbjct: 276 NVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFT 335
Query: 216 MLI 218
LI
Sbjct: 336 TLI 338
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + M R++EA M + + P+V TY+ ++ GFCK R E MEL E
Sbjct: 365 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM 424
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
+RG+ N VT L+ Q + +G P +T+N ++ LC GK+
Sbjct: 425 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKL 484
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KA+++ + P +++++I+ +
Sbjct: 485 AKAMVVFEYLQRSTMEPDIYTYNIMIEGM 513
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 17/133 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A + + N G++PDV+TY++++ C GR ++A LL++ IER + NVVT
Sbjct: 274 MDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 333
Query: 164 LL------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ ++L I R+I T++++I C ++ +A + LM
Sbjct: 334 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 393
Query: 207 KIPSRTSHDMLIK 219
P+ ++ LIK
Sbjct: 394 CFPNVVTYSTLIK 406
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 45/238 (18%)
Query: 9 PTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGT 68
P+ F++ RS ++A + R + R D IK + + +D+F + K
Sbjct: 28 PSFFNLCGSGCWERSFASASG-----DYREILRNRLSDIIK---VDDAVDLFGDMVKSRP 79
Query: 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY-------------------E 109
S+ +FN LL A+ +N+ + + +G + Y
Sbjct: 80 FPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALA 139
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---- 165
+L + G +PD+ T +++++G+C R ++A+ L+++ +E G + T L+
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLF 199
Query: 166 -------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q ++ G P +T+ V+ LC G I AL LL M E GKI +
Sbjct: 200 LHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEA 256
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
KA ++E +++F + + G + + L+ + D A F + VG
Sbjct: 410 KAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNIL 469
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++ +A + ++ ++PD+YTY +++G CK G+ + EL
Sbjct: 470 TYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL 529
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+GV+ NV I +N +I C G +A LL M E G +P
Sbjct: 530 SLKGVSPNV------------------IAYNTMISGFCRKGSKEEADSLLKKMKEDGPLP 571
Query: 210 SRTSHDMLIK 219
+ +++ LI+
Sbjct: 572 NSGTYNTLIR 581
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + P+V T++A++D F K G+ EA +L +E I+R + ++ T
Sbjct: 307 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 366
Query: 162 IQLLQ------RL-EMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL E H+ P +T++ +I+ C ++ + + L M +
Sbjct: 367 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQ 426
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + ++ LI Q
Sbjct: 427 RGLVGNTVTYTTLIHGFFQ 445
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
R+ +A ++ + G KPD +T+T ++ G +++EA+ L+++ ++RG ++VT
Sbjct: 168 RISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYG 227
Query: 162 ---------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ LL+++E G I + +N +I LC + AL L M
Sbjct: 228 TVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNK 287
Query: 206 GKIPSRTSHDMLIKKL 221
G P ++ LI L
Sbjct: 288 GIRPDVFTYSSLISCL 303
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A +L ++ ++ DV Y I+DG CK ++A+ L E +G+
Sbjct: 237 GDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIR------ 290
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T++++I LC G+ A LL M E P+ + LI
Sbjct: 291 ------------PDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 335
>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 884
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 36/211 (17%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------- 102
A L E + + + G SV FN ++ A +D A K + LM G
Sbjct: 466 AGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSST 525
Query: 103 ------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
R++EA ++L + + GL + +T ++DG+ KVG + A L E
Sbjct: 526 CSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEME 585
Query: 151 ERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIH 193
RG+ + + + L EM G +P +N++I LC GK+H
Sbjct: 586 ARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLH 645
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+AL L M + G +P + +++I ++
Sbjct: 646 EALKLEREMRQKGLLPDIFTTNIIINGFCKE 676
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 34/201 (16%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ F+D + KA ++E + F+ + K G + +N L+ L
Sbjct: 591 PDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCN---------- 640
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
G++ EA ++ ++ GL PD++T I++GFCK GR A + E GV
Sbjct: 641 ------CGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGV 694
Query: 155 TQNVVTLIQLL----QRLEM-------------GHIPRTITFNNVIQALCGVGKIHKALL 197
T + VT L+ + L+M G P T+N IQ C KI +A+
Sbjct: 695 TPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVT 754
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
+L + G +P+ +++ ++
Sbjct: 755 MLDELIAVGVVPNTVTYNTMM 775
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VEEAYE + G P+ + Y +++ G C G+ +EA++L E ++G+ ++ T
Sbjct: 607 GLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTT 666
Query: 162 IQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ EM HI P T+T+N +I C V + A L MY
Sbjct: 667 NIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYA 726
Query: 205 HGKIPSRTSHDMLIK 219
G P T++++ I+
Sbjct: 727 SGWDPDITTYNIRIQ 741
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G+ ++YE+ + L PD Y + G C G+ +EAM+ L + +E+G+ +VV
Sbjct: 432 GKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAF 491
Query: 160 -TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++I R L G +P + T ++++ L G++ +A LL+ M +
Sbjct: 492 NSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMID 551
Query: 205 HG 206
G
Sbjct: 552 KG 553
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T + F N G V EA ++ ++ GL P+V Y +M G+ K +A L E
Sbjct: 352 STIITAFCNE---GNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEE 408
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMGH-IPRTITFNNVIQALCGVGK 191
++G+ + T +L + + +P ++ + LC G+
Sbjct: 409 MRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQ 468
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +A+ L M E G PS + + +I
Sbjct: 469 LDEAMQFLEDMLEKGMPPSVVAFNSVI 495
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A +L + +PDVY Y +++ + GR+++A+ L+ I+ G
Sbjct: 292 GYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCK------ 345
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P ITF+ +I A C G + +A + + E G P+ ++ L+
Sbjct: 346 ------------PSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLM 390
>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
Length = 973
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA----------LVMLNEQDT-AVK--F 94
+K+ +E ++++ + DG SV ++ L++A L +L E + VK
Sbjct: 206 VKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNV 265
Query: 95 FSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+S + + R +EAY +L ++N+G KPDV T+T ++ C GR ++A ++ +
Sbjct: 266 YSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 325
Query: 149 AIERGVTQNVVTLIQLLQR----------LEM-------GHIPRTITFNNVIQALCGVGK 191
+ + VT I LL + +E+ G+ + + VI ALC VG+
Sbjct: 326 MKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGR 385
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +AL + M + G +P + S++ LI
Sbjct: 386 VFEALEMFDEMKQKGIVPEQYSYNSLI 412
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 33/180 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
++I+N++K DG N +V + ++ AL VGRV EA EM +K
Sbjct: 355 MEIWNAMKADGYNDNVVAYTAVIDALCQ----------------VGRVFEALEMFDEMKQ 398
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-------------LIQ 163
G+ P+ Y+Y +++ GF K R +A+EL G N T I+
Sbjct: 399 KGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIK 458
Query: 164 LLQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+QR E+ G +P + N V+ L G++ A + + G P ++ M+IK
Sbjct: 459 AIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIK 518
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 34/176 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KAS E + IF + ++ V N L+ DT K GR +EA+
Sbjct: 522 KASKFDEAVKIFYDMIENNCVPDVLAVNSLI---------DTLYK-------AGRGDEAW 565
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ +K L+P TY ++ G + G+ E M LL E
Sbjct: 566 RIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHS---------------- 609
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ P IT+N ++ LC G ++ AL +L+ M G IP +S++ +I L ++
Sbjct: 610 --NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 663
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
R+E+A ++ N+ + G P TY ++DG K GR +A L NE +E G N
Sbjct: 875 RLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANC 930
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI--- 162
EA E+ + DG+ P V TY+ +M F K + LL E GV NV +
Sbjct: 213 EALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICI 272
Query: 163 -------------QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
++L ++E G P IT +IQ LC G+I A + + M + +
Sbjct: 273 RVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQK 332
Query: 209 PSRTSHDMLIKKL 221
P R ++ L+ K
Sbjct: 333 PDRVTYITLLDKF 345
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 97 NHLMVGRVEE-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L+ G V+E A + +K G PD +TY ++D K R E +++ E
Sbjct: 794 NSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHR 853
Query: 152 RGVTQNVVTLIQLL------QRLE-----------MGHIPRTITFNNVIQALCGVGKIHK 194
+G VT ++ +RLE G P T+ ++ L G+I
Sbjct: 854 KGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIED 913
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A L M E+G + T +++L+
Sbjct: 914 AENLFNEMLEYGCKANCTIYNILL 937
>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
Length = 861
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+H GRV E+ ++ + G+KPD+ TY+ ++DG+C G+ +EAM+LL+ + G+
Sbjct: 252 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLK- 310
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P T+T++ +I C + ++ AL+L M G P ++++
Sbjct: 311 -----------------PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNI 353
Query: 217 LIKKLDQ 223
+++ L Q
Sbjct: 354 ILQGLFQ 360
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 37/162 (22%)
Query: 94 FFSNHLMVG-----RVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
F N+L+ G R +EA E+L + +D G PDV +YT +++GF K G S++A
Sbjct: 159 FSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYST 218
Query: 146 LNEAIERGVTQNVVTLIQLLQRLEMGHI-----------------------------PRT 176
+E ++RG+ +VVT ++ L G P
Sbjct: 219 YHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDI 278
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IT++ +I C GK+ +A+ LL M G P+ ++ LI
Sbjct: 279 ITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 320
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 17/128 (13%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
DL++ + + + T + + G+++EA ++L + + GLKP+ TY+ +++G+CK+
Sbjct: 267 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKI 326
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITF 179
R +A+ L E GV+ +++T +LQ L E G T+
Sbjct: 327 SRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 386
Query: 180 NNVIQALC 187
N ++ LC
Sbjct: 387 NIILHGLC 394
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 22/122 (18%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++ + L NV G + + T+T ++ G C R+++AM++
Sbjct: 100 AGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDI--------------- 144
Query: 161 LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE---HGKIPSRTSHDM 216
+L+R+ E+G IP ++NN++ LC + +AL LL +M + G P S+
Sbjct: 145 ---VLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTT 201
Query: 217 LI 218
+I
Sbjct: 202 VI 203
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 36/202 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------------- 102
+F+ + + G + ++ L+ + + D A+K S + VG
Sbjct: 265 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 324
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----- 154
R+E+A + +++ G+ PD+ TY I+ G + R+ A EL E G
Sbjct: 325 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 384
Query: 155 TQNVV-----------TLIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLM 202
T N++ +Q+ Q L + + TFN +I AL VG+ +A L
Sbjct: 385 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 444
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+G +P+ ++ ++ + + Q
Sbjct: 445 SSNGLVPNYWTYRLMAENIIGQ 466
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 20/90 (22%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLN-EAIERGVTQ--NVVTLIQLL--------- 165
G P+V++Y +++G C RS EA+ELL+ A +RG +VV+ ++
Sbjct: 153 GCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDS 212
Query: 166 --------QRLEMGHIPRTITFNNVIQALC 187
+ L+ G +P +T++++I ALC
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYSSIIAALC 242
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 33/172 (19%)
Query: 65 KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
K G SVS +N L+ AL M GR+ EA +M+ ++ G+ PD
Sbjct: 360 KKGIMPSVSTYNLLVHAL----------------FMEGRMGEADDMIKEMRKKGIIPDAI 403
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR-------------- 167
TY +++G+ + G + +A +L NE + +G+ VT LI +L R
Sbjct: 404 TYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKI 463
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
L+ G P I FN ++ C G + +A +LL M P + + L++
Sbjct: 464 LDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQ 515
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A +L ++ G++PD YTY +++ G CK GR EA L ++ +E
Sbjct: 276 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVE---------- 325
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+G +P +T+N +I C G + +A M + G +PS +++++L+ L
Sbjct: 326 --------IGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 377
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 41/232 (17%)
Query: 15 LLVDSPSRSPSAAESLDLKEN-------PRSLQAQRFVDKI-KASPLKERIDIFNSIKKD 66
+L++ SR +A ++ DL P + + + + + +KE D+F I
Sbjct: 407 ILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQ 466
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G + V FN ++ H G VE A+ +L + + PD T+
Sbjct: 467 GVSPDVIMFNAMV----------------DGHCANGNVERAFMLLKEMDRKSVPPDEVTF 510
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQR--------------LE 169
+M G C+ G+ EA LL+E RG+ + + TLI R L
Sbjct: 511 NTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLS 570
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+G P +T+N +I+ LC + A LL M G P +++ LI+ +
Sbjct: 571 IGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 622
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 41 AQRFVDKIKASPLKERIDIFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
A+R +D ++ ++ + S+ K+G S D ++ + ++ T
Sbjct: 281 ARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLID 340
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ G +E A+ + G+ P V TY ++ GR EA +++ E ++G+
Sbjct: 341 GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI-- 398
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
IP IT+N +I G KA L M G P+ ++
Sbjct: 399 ----------------IPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTS 442
Query: 217 LIKKLDQQ 224
LI L ++
Sbjct: 443 LIYVLSRR 450
>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
Length = 523
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 37/182 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------------HL 99
+F+ ++ G V +N LL AL D A K F +
Sbjct: 239 VFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVEPDACSYAIFIRAYC 298
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+ + +L +K L P+V+TY I+ CK G+ +A +LL+E +ERGV+
Sbjct: 299 EANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMMERGVS---- 354
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P ++N ++ C ++++A L+ +M + +P R S++ML+K
Sbjct: 355 --------------PDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLK 400
Query: 220 KL 221
L
Sbjct: 401 LL 402
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 23/182 (12%)
Query: 45 VDKIKASPLKERIDIFNSI-KKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLM 100
+D++K L + +N I KK N V D LL ++ A + + H
Sbjct: 310 LDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMMERGVSPDAWSYNTILAYHCE 369
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V A +++ + D PD ++Y ++ +VGR + A E+ ERG
Sbjct: 370 HSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGRFDRATEIWESMGERGF------ 423
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALC-GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P T++ +I LC GK+ +A M + G P ++ +ML
Sbjct: 424 ------------YPSVSTYSVMIHGLCKKKGKLEEACRYFETMIDEGIPPYASTIEMLRN 471
Query: 220 KL 221
+L
Sbjct: 472 RL 473
>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
Length = 477
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 34/157 (21%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ E ++F ++ + +V + L+ L + D+A++ +L
Sbjct: 207 IGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIR----------------LLE 250
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+ + G+KP+V+TY+++MDG CK G S+ A+ELL+ + R H
Sbjct: 251 EMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSR------------------RH 292
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+P IT++ ++ LC GK+ +A+ +L M G P
Sbjct: 293 LPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRP 329
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 27/205 (13%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIK----KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
A R ++++ + +K + ++S+ K G + + D++++ L T
Sbjct: 245 AIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVH 304
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
G+++EA E+L +K GL+PD Y I+ GFC + + +EA L+E + G++
Sbjct: 305 GLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISP 364
Query: 157 NVVTLIQ-------LLQRLEMGHIPRTI----------------TFNNVIQALCGVGKIH 193
N +T ++Q L H R TF++++ C G +H
Sbjct: 365 NRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLH 424
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLI 218
KA L+ M G IP + + ++
Sbjct: 425 KAAHLVDEMVLDGCIPDEXTWNAVV 449
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + + N G P YTY ++ G C++G+ EA EL E + + VVT
Sbjct: 170 GTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTY 229
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P T+++++ C G +AL LL +M
Sbjct: 230 XSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVS 289
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+P+ ++ L+ L ++
Sbjct: 290 RRHLPNMITYSTLVHGLCKE 309
>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
filifolia]
Length = 431
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A +L +E + + + N VT L+
Sbjct: 208 VQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLI 324
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +++ + GL+PD TYT ++DG CK G + A E I+ + + V
Sbjct: 296 GDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T+ +I C G + K LL M
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 416 DGHVPSVVTYNVLM 429
Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 143 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 202
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM +P +TF +I C G+
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGR 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 295
>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 31/205 (15%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK----FF 95
+A F D++ AS + + +N+I K +A+ +L + D A
Sbjct: 172 RAMEFFDEMVASGYQPNLHTYNTIIK-----GFCKIGKTTVAVGLLKKMDKAGGRPDIVI 226
Query: 96 SNHLMVGR-----VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
N ++ G V EA ++ +K G++PDV+TY+ +M G C + EA L NE +
Sbjct: 227 YNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMM 286
Query: 151 ERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIH 193
+ +VVT L+ +L E G P T+N+++ C K+
Sbjct: 287 SLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVF 346
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLI 218
+A ++ M G +P+ S+++LI
Sbjct: 347 EARMVFDAMITKGCMPNVVSYNILI 371
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV----------- 101
+ E +DIF+ IK G V ++ L+ L ++++ A F+ + +
Sbjct: 240 VSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNI 299
Query: 102 --------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
G + EA ++ + G++P+ TY ++M+G+C + EA + + I +G
Sbjct: 300 LVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKG 359
Query: 154 VTQNVVTLIQLL------QRL--------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
NVV+ L+ QR+ EM G IP T +N +I LC G+ +A
Sbjct: 360 CMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEAR 419
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M G P + +L+ L
Sbjct: 420 ELFKDMQAQGCSPDLVTCTILLDSL 444
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA E+ + GL P+ + Y ++ G C+ GR EA EL + +G + ++VT
Sbjct: 379 RIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCT 438
Query: 163 QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
LL L ++G++ + +Q C + +L+ MY+ GKI
Sbjct: 439 ILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV+ A+ +L + G +PD T++++++G C + AME +E +
Sbjct: 134 RVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVAS---------- 183
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G+ P T+N +I+ C +GK A+ LL M + G P ++ +I L
Sbjct: 184 --------GYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGL 234
>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 806
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 38/199 (19%)
Query: 41 AQRFVDKIKASPLKERID----IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
Q F IK ++ R+ ++N + ++G + +V +N L+ L D
Sbjct: 314 VQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLC----SD------- 362
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
G ++EA + ++ D ++P+V TY+ I+ GF K G A E N+ I G
Sbjct: 363 -----GNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRP 417
Query: 157 NVV---TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLL 199
NVV ++ +L ++ M G P ITFNN I+ LC G++ A+ +L
Sbjct: 418 NVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVL 477
Query: 200 FLMYEHGKIPS-RTSHDML 217
M ++ +P+ RT +++L
Sbjct: 478 DQMEKYECLPNIRTYNELL 496
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 41/199 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNHL 99
++N++K +G +V +N LL AL + D A K S+
Sbjct: 166 LYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMC 225
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+G V++A E+ M +P V Y A++ G CK R EA +L+NE ++RGV NV+
Sbjct: 226 KLGDVDKARELAMK-----FEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVI 280
Query: 160 TLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ ++ L +MG++ P TF ++I+ G++ A+ L LM
Sbjct: 281 SYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLM 340
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P+ +++ LI L
Sbjct: 341 IREGVSPNVVAYNTLIHGL 359
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 33/168 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ S + D+ +++ DG +V FN+ + L GRVE A
Sbjct: 431 QMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCR----------------AGRVEWAM 474
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-------- 160
+L ++ P++ TY ++DG + EA L+ E ER V + VT
Sbjct: 475 NVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGF 534
Query: 161 --------LIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLL 199
++QLL ++ + I TIT N + A C +GK+ A+ +L
Sbjct: 535 SFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVL 582
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------- 102
+ E I ++N ++KD +V+ ++ ++ + +A + ++ + G
Sbjct: 365 MDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTC 424
Query: 103 ---------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++A++++ N+ +DG P V T+ + G C+ GR AM +L++ +
Sbjct: 425 MVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYE 484
Query: 154 VTQNVVTLIQLLQRL 168
N+ T +LL L
Sbjct: 485 CLPNIRTYNELLDGL 499
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 98 HLMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ +G+V+ A ++L N+ + + D+ T+T I+ G C + EA+ L+E ++RG+
Sbjct: 569 YCKLGKVKTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFP 628
Query: 157 NVVTLIQLLQRL--EMGHI 173
N+ T L++ ++GH+
Sbjct: 629 NIATWNVLVRGFFSKLGHM 647
>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g07290, mitochondrial; Flags: Precursor
gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 880
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++EEA + + D + P V TY A+++G+CK GR A ELL +R NV
Sbjct: 350 GKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVR-- 407
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TFN +++ LC VGK +KA+ LL M ++G P S+++LI L
Sbjct: 408 ----------------TFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGL 451
Query: 222 DQQ 224
++
Sbjct: 452 CRE 454
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV A+E+L ++ KP+V T+ +M+G C+VG+ +A+ LL ++ G++ ++V+
Sbjct: 385 GRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSY 444
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L GH+ P +TF +I A C GK A L LM
Sbjct: 445 NVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLR 504
Query: 205 HG 206
G
Sbjct: 505 KG 506
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 34/158 (21%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +KE + + I K G SV + L+ L+ G + ++
Sbjct: 558 KGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIR----------------SGDITGSF 601
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+L +K G P+VY YT I++G C+ GR EA +LL+ + GV+ N VT +++
Sbjct: 602 RILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK-- 659
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
G++ NN GK+ +AL + M E G
Sbjct: 660 --GYV------NN--------GKLDRALETVRAMVERG 681
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + AY++L ++ ++PD T+TAI++ FCK G+++ A L + +G++ + VT
Sbjct: 455 GHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTG 514
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L I +C VGK AL +L
Sbjct: 515 TTL------------------IDGVCKVGKTRDALFIL 534
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY---EMLMNVKN 116
+ ++ DG + D+ ++ AL + A F S L +G V +++ +L+
Sbjct: 183 YRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCR 242
Query: 117 -----DGLK------------PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
D LK P+ +Y+ ++ G C+VGR EA L ++ E+G
Sbjct: 243 GLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQ---- 298
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P T T+ +I+ALC G I KA L M G P+ ++ +LI
Sbjct: 299 --------------PSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLID 344
Query: 220 KL 221
L
Sbjct: 345 GL 346
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ + A L + G+ D T T ++DG CKVG++ +A+ +L ++ + +L
Sbjct: 490 GKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSL 549
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L L ++G +P +T+ ++ L G I + +L LM
Sbjct: 550 NVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKL 609
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G +P+ + ++I L Q
Sbjct: 610 SGCLPNVYPYTIIINGLCQ 628
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 17/178 (9%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
I N+ K G S F L++ + ++ T VG+ +A +L +
Sbjct: 482 IINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMR 541
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
+ ++ I+D K + E + +L + + G+ +VVT L+
Sbjct: 542 ILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSF 601
Query: 166 QRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ LE+ G +P + +I LC G++ +A LL M + G P+ ++ +++K
Sbjct: 602 RILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK 659
>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
macropoda]
Length = 412
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + ++ +G ++E + + + G
Sbjct: 145 VFDAITKWGLRPSVVSYNTLM----------------NGYIRLGDLDEGFRLKSAMLASG 188
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 189 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 248
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L P IT+N +I LC G + +A L+ M P + ++ LI
Sbjct: 249 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLI 305
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+ ++ + LKPD TYT ++DG CK G + A E I+ + + V
Sbjct: 277 GDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAY 336
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P + T+ +I C G + K LL M
Sbjct: 337 TALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQR 396
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 397 DGHVPSVVTYNVLM 410
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 124 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSA 183
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 184 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 243
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M P +++ LI L ++
Sbjct: 244 VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 276
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVVT 160
G +++A+E+L + G KP+VYT+T ++DG CK G + +A L + + G NV T
Sbjct: 308 GSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHT 367
Query: 161 LIQL---------LQRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ L R EM G +P T T+ +I C VG +A L+ LM
Sbjct: 368 YTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMG 427
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+ G P+ +++ +I L ++
Sbjct: 428 KEGFSPNIYTYNAIIDGLCKK 448
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 17/147 (11%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T H VG AYE++ + +G P++YTY AI+DG CK G +EA LLN+
Sbjct: 401 NTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNK 460
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
G+ + VT L+ + L++G P ++ +I C +
Sbjct: 461 VSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQ 520
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ ++ L G IP++ ++ +I
Sbjct: 521 MKESERLFEEAVSLGLIPTKKTYTSMI 547
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 18/119 (15%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ----------- 166
GL P+V +TA+++G CK G +A ELL E + RG NV T L+
Sbjct: 289 GLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKA 348
Query: 167 -RLEM------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
RL + G+ P T+ +I C K+++A +LL M E G +P+ ++ LI
Sbjct: 349 FRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 66/175 (37%), Gaps = 52/175 (29%)
Query: 102 GRVEEAYEMLMNVKNDGL-----------------------------------KPDVYTY 126
G+++EA M++ ++N GL PD ++
Sbjct: 168 GKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSF 227
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVVTLI---------------QLLQRLE 169
++ C +GR EA + LN +ERG V TLI + +E
Sbjct: 228 KLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVE 287
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
MG P I F +I LC G I +A LL M G P+ +H LI L ++
Sbjct: 288 MGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKK 342
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 80 MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
++L ++ + T + G A ++ + N G PD TY A++ G CK +
Sbjct: 532 VSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKL 591
Query: 140 NEAMELLNEAIERGVTQNVV----------------TLIQLLQRLEMGHIPRTITFNNVI 183
++A L + +++G++ V T I +L RLE RT+ N ++
Sbjct: 592 DDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTV--NTLV 649
Query: 184 QALCGVGKIHKALLLL 199
+ LC GK+ A L
Sbjct: 650 RKLCSEGKLDMAALFF 665
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 30/182 (16%)
Query: 40 QAQRFVDKIKASPLKE---RIDIFNSI--KKDGTNWSVSDFNDLLMALVM--LNEQDTAV 92
+A R ++K+ L+ I S+ ++ TN S+ FN +L ++ T +
Sbjct: 453 EAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLI 512
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
F + E +E +++ GL P TYT+++ G+C+ G ++ A
Sbjct: 513 SXFCRQKQMKESERLFEEAVSL---GLIPTKKTYTSMICGYCRYGNTSLA---------- 559
Query: 153 GVTQNVVTLIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
++L QR+ G P +IT+ +I LC K+ A L M + G P
Sbjct: 560 ---------VKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCE 610
Query: 212 TS 213
+
Sbjct: 611 VT 612
>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
Length = 1139
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +++ + +F+ ++ G +V +N L+ + + G ++ A
Sbjct: 385 KRGMIEDALCLFDKMRDKGIKVTVYPYNSLI----------------NGYCKQGSLDRAR 428
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
+L + +GL P +Y+ ++ G C+ G + MEL E ERG+ N T L+
Sbjct: 429 GLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGF 488
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ ++ IP +TFN +I+ C VG I KA L M E G P
Sbjct: 489 CKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDN 548
Query: 212 TSHDMLIKKL 221
++ LI L
Sbjct: 549 YTYRSLISGL 558
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
VEEA+ + + + G+ P+V+ Y A++D CK R ++A L E RG+ N VT
Sbjct: 319 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 378
Query: 164 LLQRL-EMGHIPRTIT----------------FNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L + G I + +N++I C G + +A LL M + G
Sbjct: 379 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438
Query: 207 KIPSRTSHDMLIKKL 221
P+ S+ LI L
Sbjct: 439 LTPTAASYSPLIAGL 453
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+++EA +++ + G PD +Y+ I+ CK+G N+A EL NE + +G+ +VV
Sbjct: 771 GKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVA 829
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM------ 170
DG P+ T+T +++ CK G A L E + V N T L
Sbjct: 682 DGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEK 741
Query: 171 ----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
GH+ ++FN +I+ LC GKI +A+ L+ + E G P S+ +I +
Sbjct: 742 AKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHE 801
Query: 221 L 221
L
Sbjct: 802 L 802
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N LM G RV+EA E+ + N G+ D TY ++ GFC++ A+ + ++ I
Sbjct: 237 NVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIR 296
Query: 152 RGVT---QNVVTLIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHK 194
G N +I L++ E +G +P +N +I LC +
Sbjct: 297 LGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDD 356
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G P+ ++ +LI L ++
Sbjct: 357 ADRLFKEMAGRGLEPNEVTYAILIHALCKR 386
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++ A +++ ++++G+K Y +M G CK R EA+E+ N + GVT +
Sbjct: 214 LDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTAD------ 267
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+T+ ++ C + ++ AL + M G +PS + +I +L +
Sbjct: 268 ------------EVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRK 315
Query: 224 Q 224
+
Sbjct: 316 K 316
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 81/240 (33%), Gaps = 71/240 (29%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF----------------- 95
L +++ + + G W+ F L+ + D A + F
Sbjct: 459 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518
Query: 96 --SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY--------------------------- 126
+ +VG + +A+++ + GLKPD YTY
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578
Query: 127 --------TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------- 161
TA++ GF + GR E L +E RGV ++V+
Sbjct: 579 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 638
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + E G P I + +I AL + +AL M G P+ +H +LI L
Sbjct: 639 VLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNL 698
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA ++E ID+ + I + G + ++ ++ L + G + +A+
Sbjct: 769 KAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKM----------------GDINKAF 812
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKV-GRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
E+ + GLKPDV Y I +C V G S++A+ + I GV N T LL
Sbjct: 813 ELWNEMLYKGLKPDVVAYN-IFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871
Query: 168 LEM 170
+ +
Sbjct: 872 ISL 874
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVVT 160
G +++A+E+L + G KP+VYT+T ++DG CK G + +A L + + G NV T
Sbjct: 308 GSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHT 367
Query: 161 LIQL---------LQRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ L R EM G +P T T+ +I C VG +A L+ LM
Sbjct: 368 YTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMG 427
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+ G P+ +++ +I L ++
Sbjct: 428 KEGFSPNIYTYNAIIDGLCKK 448
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 17/147 (11%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T H VG AYE++ + +G P++YTY AI+DG CK G +EA LLN+
Sbjct: 401 NTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNK 460
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
G+ + VT L+ + L++G P ++ +I C +
Sbjct: 461 VSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQ 520
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ ++ L G IP++ ++ +I
Sbjct: 521 MKESERLFEEAVSLGLIPTKKTYTSMI 547
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------- 168
GL P+V +TA+++G CK G +A ELL E + RG NV T L+ L
Sbjct: 289 GLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKA 348
Query: 169 ---------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G+ P T+ +I C K+++A +LL M E G +P+ ++ LI
Sbjct: 349 FRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNV 158
+G VE A M + + G+ PD ++ ++ C +GR EA LN +ERG V
Sbjct: 202 MGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNAT 261
Query: 159 VTLI---------------QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
TLI + +EMG P I F +I LC G I +A LL M
Sbjct: 262 CTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMV 321
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G P+ +H LI L ++
Sbjct: 322 RRGWKPNVYTHTTLIDGLCKK 342
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 80 MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
++L ++ + T + G A ++ + N G PD TY A++ G CK +
Sbjct: 532 VSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKL 591
Query: 140 NEAMELLNEAIERGVTQNVV----------------TLIQLLQRLEMGHIPRTITFNNVI 183
++A L + +++G++ V T I +L RLE RT+ N ++
Sbjct: 592 DDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTV--NTLV 649
Query: 184 QALCGVGKIHKALLLL 199
+ LC GK+ A L
Sbjct: 650 RKLCSEGKLDMAALFF 665
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 30/182 (16%)
Query: 40 QAQRFVDKIKASPLKE---RIDIFNSI--KKDGTNWSVSDFNDLLMALVM--LNEQDTAV 92
+A R ++K+ L+ I S+ ++ TN S+ FN +L ++ T +
Sbjct: 453 EAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLI 512
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
F + E +E +++ GL P TYT+++ G+C+ G ++ A
Sbjct: 513 STFCRQKQMKESERLFEEAVSL---GLIPTKKTYTSMICGYCRYGNTSLA---------- 559
Query: 153 GVTQNVVTLIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
++L QR+ G P +IT+ +I LC K+ A L M + G P
Sbjct: 560 ---------VKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCE 610
Query: 212 TS 213
+
Sbjct: 611 VT 612
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV EA ++ + L+PD TYTA++DG+CK G+ EA L N+ ++ G+T N+VT
Sbjct: 306 TGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVT 365
Query: 161 LIQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMY 203
L L + G + T+N+++ LC G I +A+ L+ M
Sbjct: 366 YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDME 425
Query: 204 EHGKIPSRTSHDMLI 218
G P ++ L+
Sbjct: 426 VAGFHPDAVTYTTLM 440
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 37/191 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-------------VKFF 95
K +KE + N + + G ++ + L L E DTA + +
Sbjct: 340 KEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIY 399
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ + +V G +++A +++ +++ G PD TYT +MD +CK A ELL +
Sbjct: 400 TYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQM 459
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
++R + P +TFN ++ C G + LL M E G +P
Sbjct: 460 LDRELQ------------------PTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMP 501
Query: 210 SRTSHDMLIKK 220
+ T+++ LIK+
Sbjct: 502 NATTYNSLIKQ 512
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V AY + ++ + PD TYTA++ G C+ GR EA +L +E + + + + VT
Sbjct: 271 LGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVT 330
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ Q L+MG P +T+ + LC G++ A LL M
Sbjct: 331 YTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMC 390
Query: 204 EHG 206
G
Sbjct: 391 RKG 393
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+V EA +L + ++G+ PD YT ++DGFCK+G + A L +E +R ++ + +T
Sbjct: 236 TGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFIT 295
Query: 161 LIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L + G + P +T+ +I C GK+ +A L M
Sbjct: 296 YTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQML 355
Query: 204 EHGKIPSRTSHDML 217
+ G P+ ++ L
Sbjct: 356 QMGLTPNIVTYTAL 369
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 31/122 (25%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT----------------QNVVTL 161
GLKP+ YTY ++ CK G+ EA +L E I G+ NV +
Sbjct: 218 GLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSA 277
Query: 162 IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+L ++ I P IT+ VI LC G++ +A + H+M+ K+
Sbjct: 278 YRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEA--------------DKLFHEMVCKR 323
Query: 221 LD 222
L+
Sbjct: 324 LE 325
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA ++ + G +PD TYTA++DG+CK+G +A L N+ ++ G+T NVVT
Sbjct: 264 GKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTY 323
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L L EM G T+N ++ LC G I +A+ L+ M E
Sbjct: 324 TALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKE 383
Query: 205 HGKIPSRTSHDMLI 218
G P ++ L+
Sbjct: 384 AGLHPDTITYTTLM 397
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 18/119 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A +++ +K GL PD TYT +MD + K G +A ELL E ++RG+
Sbjct: 369 GNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQ------ 422
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +TFN ++ LC GK+ LL M E G +P+ +++ ++K+
Sbjct: 423 ------------PTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQ 469
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 33/182 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+ +F+ + G W+ +N L+ +L L G++ EA+ +LM ++
Sbjct: 95 LKVFSEFPQLGVCWNTESYNILMNSLFRL----------------GKIREAHHLLMRMEF 138
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR------ 167
G PDV +YT I+DG+C VG + ++L+ E +G+ N+ T +I LL +
Sbjct: 139 KGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVE 198
Query: 168 --------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
++ G P + + +I C +G A L M +P + LI
Sbjct: 199 GEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALIC 258
Query: 220 KL 221
L
Sbjct: 259 GL 260
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + +G +++A+ + + GL P+V TYTA+ DG CK G + A ELL+E
Sbjct: 287 TYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEM 346
Query: 150 IERGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKI 192
+G+ N+ T ++L++ + E G P TIT+ ++ A G++
Sbjct: 347 CRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEM 406
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KA LL M + G P+ + ++L+ L
Sbjct: 407 VKARELLREMLDRGLQPTVVTFNVLMNGL 435
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V E ++L + G+ PD YT ++DGFCK+G + A +L +E R + + +
Sbjct: 194 GKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAF 253
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + ++ G P +T+ +I C +G++ KA L M +
Sbjct: 254 SALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQ 313
Query: 205 HGKIPSRTSHDML 217
G P+ ++ L
Sbjct: 314 IGLTPNVVTYTAL 326
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G + AY++ ++ + PD ++A++ G G+ EA +L NE I++G + VT
Sbjct: 228 LGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVT 287
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ Q +++G P +T+ + LC G++ A LL M
Sbjct: 288 YTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMC 347
Query: 204 EHGKIPSRTSHDMLIKKL 221
G + ++++ ++ L
Sbjct: 348 RKGLQLNISTYNTIVNGL 365
>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
origanoides]
Length = 431
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSVVSXNTLM----------------NGYIRLGDLDEGFRLKSVMLASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G CK + ++A E +E + +G+ N VT L+
Sbjct: 208 VQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAK 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLI 324
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ ++ GLKPD TYT ++BG CK G + A E I+ + + V
Sbjct: 296 GDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVY 355
Query: 162 IQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM + P T T+ +I C G + K LL M
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 416 DGHAPSVVTYNVLM 429
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V + +M+G+ ++G +E L +
Sbjct: 143 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSV 202
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 203 MLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A + M +P +++ LI L ++
Sbjct: 263 VDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKK 295
>gi|242095134|ref|XP_002438057.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
gi|241916280|gb|EER89424.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
Length = 499
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G V+EA +++ +K G + DV TY +++G C+ GR+ EAM+LL GV NV +
Sbjct: 343 GSVDEAINLVLEMKQKGCRADVVTYNLVIEGLCRDGRTVEAMDLLESVPLEGVKLNVASY 402
Query: 161 ---LIQLLQRLEMGH-------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L R EM +P NN++ LC G+I A + L+ + +
Sbjct: 403 RILMNCLCSRGEMDKAVGLLGLMLGRGFLPHYAASNNLLIGLCDAGRIADATMALYGLAD 462
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P + L++ + ++
Sbjct: 463 AGFMPEARCWERLVETMCRE 482
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 18/106 (16%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ H +E A + ++N G++PD +YTA++ C+ G +EA+ L+ E ++G
Sbjct: 300 LINGHCKKADIEAARSVFEEMRNAGVEPDAVSYTALIGCLCRHGSVDEAINLVLEMKQKG 359
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+VV T+N VI+ LC G+ +A+ LL
Sbjct: 360 CRADVV------------------TYNLVIEGLCRDGRTVEAMDLL 387
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 20/121 (16%)
Query: 101 VGRVEEAYEMLMNVKN---DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+G +E A+++L ++ +KP++ TY+ ++ G C+ G+ EA EL E IE+
Sbjct: 198 IGELETAFKVLDEMREYTCADVKPNLVTYSTLIAGLCRGGKMMEAFELFEEMIEK----- 252
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
R+ +P + +N +I C +G++ KA + M ++ P+ ++ L
Sbjct: 253 --------DRI----VPDQLLYNVIIDGFCRLGQVDKARAIFGFMKKNDCEPNAFNYATL 300
Query: 218 I 218
I
Sbjct: 301 I 301
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EA ++ + G KPDV+ Y +++G+CK R ++A +L NE I +G+T
Sbjct: 10 VVEARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLT-------- 61
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P +T+N +I LC +G++ +A L M+++G +P ++ +L+ L +
Sbjct: 62 ----------PDKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCK 111
Query: 224 Q 224
Q
Sbjct: 112 Q 112
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 34/172 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L+E D+F ++ K+G + DL ++L D K G + +A+ +
Sbjct: 80 LREAQDLFKNMHKNG------NLPDLFAYSILL---DGLCK-------QGYLGKAFRLFR 123
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+++ LKPD+ Y ++D CK G +A EL +E +G+ NV
Sbjct: 124 AMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQ------------- 170
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ +I LC G + +AL M E G P S++++I+ Q
Sbjct: 171 -----IYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQH 217
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++EA E N++ DG PD ++Y I+ GF + + A+ L+ E +RG +V T
Sbjct: 183 GLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFIADVGT 241
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++A ++ + GL PD TY ++ G C++GR EA +L + + +N
Sbjct: 44 RIDKAKQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQDLF-----KNMHKN----- 93
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G++P ++ ++ LC G + KA L M P +++L+
Sbjct: 94 --------GNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILV 141
>gi|115455181|ref|NP_001051191.1| Os03g0736200 [Oryza sativa Japonica Group]
gi|29788856|gb|AAP03402.1| putative fertility restorer-like protein [Oryza sativa Japonica
Group]
gi|108710950|gb|ABF98745.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113549662|dbj|BAF13105.1| Os03g0736200 [Oryza sativa Japonica Group]
gi|125587839|gb|EAZ28503.1| hypothetical protein OsJ_12484 [Oryza sativa Japonica Group]
Length = 406
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 18/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA + + GL+PDV TY +++G CK R A E+ +E + +G + N VT
Sbjct: 231 RIYEAGRLFRRMGEKGLEPDVVTYNCLINGLCKTYRVERAHEVFDEMLRKGCSPNRVTYN 290
Query: 163 QLLQRLEM-----------------GHIPRT-ITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ + GH T T+ +I +LC +G+I +A + M E
Sbjct: 291 SFVRYYSVVNEVDKAVKWMREMVARGHGGATSSTYTPIIHSLCEIGRISEARQFIIEMAE 350
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G +P ++ ++ ++++
Sbjct: 351 SGHLPREHTYKLVKDEIEK 369
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 102 GRVEEAYEMLMNVKNDGLK--PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GR ++A +L ++ G + PD YTYT ++ +C++G + + + +
Sbjct: 182 GRFKDARFLLDQMERPGARCGPDSYTYTVLISSYCRIG--------VETGCRKAARRRIY 233
Query: 160 TLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+L +R+ E G P +T+N +I LC ++ +A + M G P+R +++ +
Sbjct: 234 EAGRLFRRMGEKGLEPDVVTYNCLINGLCKTYRVERAHEVFDEMLRKGCSPNRVTYNSFV 293
Query: 219 K 219
+
Sbjct: 294 R 294
>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
Length = 745
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA++M + G+ P+V TYTA+ DG CK G A ELL+E +G+ N T
Sbjct: 445 GKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTY 504
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L + G++ P T+ +I ALC G + +A LL M +
Sbjct: 505 NSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLD 564
Query: 205 HGKIPSRTSHDMLI 218
G P+ ++++L+
Sbjct: 565 KGIKPTIVTYNVLM 578
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +E+A + ++ LKPDVYTYT ++D CK G + A LL E +++G+
Sbjct: 514 AGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIK----- 568
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +T+N ++ C G++ LL M E P+ +++ L+K+
Sbjct: 569 -------------PTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQ 615
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 17/110 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+EEA ++L + L D TYT ++DG+CK G+ EA ++ N ++RGVT NVVT
Sbjct: 412 LEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTA 471
Query: 164 LLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
L L EM G T+N++I LC G + +A+
Sbjct: 472 LTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAM 521
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 21/142 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A+ +L + + G+KP + TY +M+GFC GR +LL+ +E+ + N T
Sbjct: 550 GDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATY 609
Query: 162 IQLLQRL-------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
L+++ ++G P T+N +I+ C + +AL M
Sbjct: 610 NSLMKQYCIENNMKSTTEIYKGMRSRDVG--PNENTYNILIKGHCKARNMKEALYFHDEM 667
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+ G + TS+ LI+ L+++
Sbjct: 668 IQKGFRLTATSYSALIRLLNKK 689
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 41/145 (28%)
Query: 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111
PL E I++F + +V +N LL AL GRV++A ++
Sbjct: 243 PLDEAIELFQELPHK----NVCSYNILLKALCD----------------AGRVKDARQLF 282
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171
+ + PDV TY ++ G C +G A++LL+E + GV
Sbjct: 283 DEMAS---APDVVTYGILIHGHCALGELENAVKLLDEMVAGGVE---------------- 323
Query: 172 HIPRTITFNNVIQALCGVGKIHKAL 196
P + +V+ LC G I AL
Sbjct: 324 --PNATVYTSVVALLCDKGWISDAL 346
>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 43/212 (20%)
Query: 49 KASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------- 100
KA ++ +D+F+ + + +V FN +L ++ D A++F+ NH++
Sbjct: 112 KAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFY-NHVIDSNSFSN 170
Query: 101 -----------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
VG V++A E+ + + D YTY+ +M G C GR +EA+
Sbjct: 171 IQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAV 230
Query: 144 ELLNEAIERGVTQNVVTLIQLLQRLE-----------------MGHIPRTITFNNVIQAL 186
LL+E G N V L+ L G +P +T+N+++ L
Sbjct: 231 SLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGL 290
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
C GK+ KA+ LL M + +P+ + L+
Sbjct: 291 CLKGKLDKAMSLLNRMVANKCVPNDITFGTLV 322
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T V F H GR + +L++++ G + + ++Y++++ G K G+ M+L E
Sbjct: 320 TLVDGFVKH---GRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEM 376
Query: 150 IERGVTQNVV---TLIQLLQR-----------LEM---GHIPRTITFNNVIQALCGVGKI 192
+E+G N + LI L R +EM GH P + T+++++ G I
Sbjct: 377 VEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDI 436
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
HKA+L+ M ++ + +LI L
Sbjct: 437 HKAILVWKEMTDNDCNHHEVCYSILINGL 465
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ E ++ + G KP+ Y+A++DG C+ G+ +EA E L E +G T N T
Sbjct: 364 GKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTY 423
Query: 162 IQLLQ-RLEMGHIPRTI----------------TFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ E G I + I ++ +I LC GK+ +AL++ M
Sbjct: 424 SSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLS 483
Query: 205 HG 206
G
Sbjct: 484 RG 485
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 54/174 (31%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIM------------------------------- 130
G+ +EA E L+ +KN G P+ +TY+++M
Sbjct: 399 GKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCY 458
Query: 131 ----DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QRLEMG--------- 171
+G CK G+ EA+ + + + RG+ +VV ++ Q +E G
Sbjct: 459 SILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLC 518
Query: 172 HIPR----TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
H P+ +T+N ++ A C + +A+ +L M + G P + D+ +K L
Sbjct: 519 HNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTL 572
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 36/202 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------- 102
+ E + + + ++ +GT + FN L+ AL + A K N + G
Sbjct: 226 IDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNS 285
Query: 103 ---------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++++A +L + + P+ T+ ++DGF K GR+ + + +L E+G
Sbjct: 286 LVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKG 345
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
N + L+ L E G P TI ++ +I LC GK +A
Sbjct: 346 YRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAK 405
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
L M G P+ ++ L+
Sbjct: 406 EYLIEMKNKGHTPNSFTYSSLM 427
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K LKE + ++ + G V ++ ++ + +K F+ L
Sbjct: 466 CKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQML-------- 517
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
N L+PDV TY +++ FC + A+++LN +++G + +T L+
Sbjct: 518 ------CHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKT 571
Query: 168 L 168
L
Sbjct: 572 L 572
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----T 155
G +E A + +++ GL P+ TY A++DG+CK A +LL E + RGV
Sbjct: 674 AGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFI 733
Query: 156 QNVV-----------TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
NV+ + L Q + T++FN +I+ C GK+ +A LL M E
Sbjct: 734 YNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIE 793
Query: 205 HGKIPSRTSHDMLI 218
IP+ ++ LI
Sbjct: 794 KQFIPNHVTYTSLI 807
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++EA E+ ++ + GL PD+YTY +++GFC RS EA +L E I+ G+ +T
Sbjct: 257 LDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNA 316
Query: 164 LLQR-LEMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ + G I + I +N ++ +C GK+ KAL ++ M E G
Sbjct: 317 LIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG 376
Query: 207 KIPSRTSHDMLIK 219
P ++ +LI+
Sbjct: 377 VEPDSQTYSLLIE 389
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++A ++L + G+ PD+ TY ++DG CK G A L ++ RG+T N VT
Sbjct: 640 GNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTY 699
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
QLL+ + + G P +N ++ C K KAL L M E
Sbjct: 700 AAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLE 759
Query: 205 HGKIPSRTSHDMLIK 219
G S S + LI+
Sbjct: 760 KG-FASTVSFNTLIE 773
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Query: 76 NDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132
N +L +VM + AV + + H GRVEE+ +L ++ G+ PDV+ Y +++ G
Sbjct: 436 NAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIG 495
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPR 175
FCK R EA L E +ER + N T + + L G +P
Sbjct: 496 FCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPN 555
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+ +I+ C G + +A + + + ++ +LI L +
Sbjct: 556 VGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 603
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA+ + ++ GL P+ +TY +++ G CK G ++A +LL E +G+
Sbjct: 605 GKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGIN------ 658
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +T+N +I LC G+I +A L + G P+ ++ ++
Sbjct: 659 ------------PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMV 703
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 80/200 (40%), Gaps = 21/200 (10%)
Query: 40 QAQRFVDKIKASPLKERIDIFNS----IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
QA R D++ A ++ + I+N+ + K G + +M + + T
Sbjct: 329 QAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLI 388
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
H + A+E+L +K L P V TY+ I++G C+ G +L E + G+
Sbjct: 389 EGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLK 448
Query: 156 QNVVTLIQL----------------LQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLL 198
N V L L+R+ E G +P +N++I C ++ +A
Sbjct: 449 PNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTY 508
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
L M E P+ ++ I
Sbjct: 509 LMEMLERRLRPNAHTYGAFI 528
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--TLIQ- 163
A+++L + G+ PD + Y I++ CK + +A++L E +E+G V TLI+
Sbjct: 715 AFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEG 774
Query: 164 -------------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L + +E IP +T+ ++I C G + +A L M E +P+
Sbjct: 775 YCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPT 834
Query: 211 RTSHDMLI 218
++ L+
Sbjct: 835 AKTYTSLL 842
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR--LEMGHIPRTIT 178
PDVYTYT ++ CKVG +A +L +E G ++ L+R ++ G +P T
Sbjct: 222 PDVYTYTNMISAHCKVGNVKDAKRVL---LEMGEKARLLDEAIELKRSMVDKGLVPDLYT 278
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
++ +I C + +A L+L M + G P +++ LI +Q
Sbjct: 279 YDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQ 324
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 40/201 (19%)
Query: 21 SRSPSAAESLDLKENPRSLQAQRFVDKI------KASPLKERIDIFNSIKKDGTNWSVSD 74
S++P+AA L + R + F+ + K ++ +D+F + + G +VS
Sbjct: 709 SKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS- 767
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
FN L+ + G+++EA +L + P+ TYT+++D C
Sbjct: 768 FNTLI----------------EGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNC 811
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTI 177
K G EA L E ER V T LL + + G P +
Sbjct: 812 KAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKM 871
Query: 178 TFNNVIQALCGVGKIHKALLL 198
T+ +I A C G + +A L
Sbjct: 872 TYYVMIDAYCREGNVMEACKL 892
>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 412
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-VGRVEEAYEML 111
+ E + I + G + +N L+ L ++ A + L VG +EA E+
Sbjct: 26 VSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVATCIIIDGLCKVGHEDEAKEIF 85
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQR- 167
+K G+ P+V +Y++++ GFC G+ E+ L NE +++GV N+V LI +L +
Sbjct: 86 EEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKE 145
Query: 168 -------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
++ G I +T+N++I C +G + A L M G + S+
Sbjct: 146 GKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISY 205
Query: 215 DMLI 218
+LI
Sbjct: 206 TILI 209
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 39/195 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------NH 98
K ++E ++++N + + G +V ++ LL L+ + A K F +
Sbjct: 214 KIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSC 273
Query: 99 LMV---------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ V G + EA E+ +K+ K D +Y+ ++DG CK G+ A E +
Sbjct: 274 IYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQL 333
Query: 150 IERGVTQNVVT---LIQLLQRLEM-----------------GHIPRTITFNNVIQALCGV 189
+ G+ NVVT +I R+E G P IT+N +++ C
Sbjct: 334 SQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCES 393
Query: 190 GKIHKALLLLFLMYE 204
K+ + + LL M++
Sbjct: 394 NKLEEVVNLLHKMFK 408
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 34/150 (22%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIM-----------------DGFCKVGRSNEAMEL 145
RV E + + G PD+ TY ++ DG CKVG +EA E+
Sbjct: 25 RVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVATCIIIDGLCKVGHEDEAKEI 84
Query: 146 LNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCG 188
E +G+ NV++ L+ + ++ G P + FN +I LC
Sbjct: 85 FEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCK 144
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
GK+ +A LL + + G I +++ LI
Sbjct: 145 EGKVIEAKKLLEVTIQRGIILDLVTYNSLI 174
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRLEMGHIP 174
GL PD++T + + C + R +E + + + RG ++V TLI+ L R+ +
Sbjct: 5 GLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVA 64
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
I +I LC VG +A + M G IP+ S+ L+
Sbjct: 65 TCI----IIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLV 104
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G + A ++ +++ + G + + +YT +++G+CK+ + EAM L NE + G NV T
Sbjct: 180 IGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKT 239
Query: 161 LIQLLQRL 168
LL L
Sbjct: 240 YSTLLTGL 247
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 23/132 (17%)
Query: 44 FVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------- 95
F+D + K L E +++FN +K ++ L+ L + + A +FF
Sbjct: 278 FLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEG 337
Query: 96 -------SNHLMVG--RVEEA------YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN 140
N ++ G RVE+ +E + ++ +G PD+ TY ++ GFC+ +
Sbjct: 338 LQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLE 397
Query: 141 EAMELLNEAIER 152
E + LL++ +R
Sbjct: 398 EVVNLLHKMFKR 409
>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
Length = 721
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +++A + + +DGL+PD TYT ++ C+ G EA +LLN + G+ +VVT
Sbjct: 531 TGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVT 590
Query: 161 LIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L++G P IT+N +I ALC G+ A M
Sbjct: 591 YTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEML 650
Query: 204 EHGKIPSRTSHDMLI 218
E G P++ ++ +LI
Sbjct: 651 ERGLAPNKYTYTLLI 665
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H G + EA ++L + +DGL+P V TYT ++ C+ G A + ++ G+ N
Sbjct: 563 HCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPN 622
Query: 158 VVT---LIQLL--------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+T LI L + LE G P T+ +I C G A+ L F
Sbjct: 623 EITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYF 682
Query: 201 LMYEHGKIPSRTSHDMLIKKLDQ 223
M+++G P +H+ L K D+
Sbjct: 683 EMHQNGIPPDYCTHNALFKGFDE 705
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 49/247 (19%)
Query: 13 SVLLVDSPSRSPSAAESLDLKENP--RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNW 70
+V LVDS S A+ NP +L + FV K +A ++ ++ +G
Sbjct: 293 AVKLVDSMRLSKKAS---SFTYNPLITALLERGFVRKAEALQME--------MENEGIMP 341
Query: 71 SVSDFNDLLMALVMLNEQDTA-VKF------------------FSNHLMVGRVEEAYEML 111
+V +N ++ L+ + + A VKF + + G ++EA +L
Sbjct: 342 TVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLL 401
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------ 165
+++ GL P V TY ++DG+C++G EA L E +E+G +V T L+
Sbjct: 402 GDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKV 461
Query: 166 -----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+ L G P +N I A + A L +M G P ++
Sbjct: 462 RNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTY 521
Query: 215 DMLIKKL 221
+++I L
Sbjct: 522 NVIIDGL 528
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 19/146 (13%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL------------- 99
L+E + N + DG SV + L+ +A +F L
Sbjct: 569 LREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNV 628
Query: 100 ------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
M GR A+ + GL P+ YTYT ++DG C+ G +A+ L E + G
Sbjct: 629 LIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNG 688
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITF 179
+ + T L + + GH+ I +
Sbjct: 689 IPPDYCTHNALFKGFDEGHMYHAIEY 714
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-RLEMGHI--- 173
G+ PD TY I+DG CK G +A L + + G+ + +T L+ E G +
Sbjct: 513 GIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREA 572
Query: 174 -------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +T+ ++ C G ++ A M + G P+ ++++LI
Sbjct: 573 RKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHA 632
Query: 221 L 221
L
Sbjct: 633 L 633
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-------VTQNVV-----------T 160
++P + TY ++D F K GR +EA LL E +G VT NVV
Sbjct: 233 VEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLEN 292
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
++L+ + + + T+N +I AL G + KA L M G +P+ +++ +I
Sbjct: 293 AVKLVDSMRLSKKASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHG 352
Query: 221 L 221
L
Sbjct: 353 L 353
>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
Length = 461
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 25/171 (14%)
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDG--LKPDVYTYT 127
N + + L + E A FS ++++ R +EA E+L + +DG PDV +Y+
Sbjct: 151 NAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYS 210
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRL-EM 170
I+DG K G S++A +E +ERG+ +VVT + +L R+ +
Sbjct: 211 TIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKN 270
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P IT+N+++ C G+ +A+ +L M G P ++ L+ L
Sbjct: 271 GVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYL 321
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA + + +D+ N + K+G +N ++ + G+ +EA
Sbjct: 252 CKAQAMDKAMDVLNRMVKNGVMPDCITYNSIV----------------HGYCSSGQSKEA 295
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
+L + +DG++PD TYT++MD CK GR EA ++L+ I+RG+ NV+T LL
Sbjct: 296 IGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLH 354
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A ++L + +G+ PD TY +I+ G+C G+S EA+ +L + GV
Sbjct: 257 MDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVE-------- 308
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +T+ +++ LC G+ +A +L M + G P+ ++ L+
Sbjct: 309 ----------PDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLL 353
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 112 MNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-- 168
M +DG + P ++TY ++ C+ GR + L I++G + LL+ L
Sbjct: 86 MARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCA 145
Query: 169 ----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
E+G P ++N +++ LC + +AL LL +M + G
Sbjct: 146 EKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDG 199
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S +G + EA ++ + GL+PD T+T +++G+CK G +A + N
Sbjct: 831 TYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHM 890
Query: 150 IERGVTQNVVTLIQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGKI 192
I+ G + NVVT L+ L EM I P T+N+++ LC G I
Sbjct: 891 IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNI 950
Query: 193 HKALLLL 199
+A+ L+
Sbjct: 951 EEAVKLV 957
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I +F + G W+V+ +N ++ + L GR++EA+ +L+ ++
Sbjct: 674 IIVFREFPEVGVCWNVASYNIVIHFVCQL----------------GRIKEAHHLLLLMEL 717
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRL----- 168
G PDV +Y+ +++G+C+ G ++ +L+ +G+ N ++I LL R+
Sbjct: 718 KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAE 777
Query: 169 ------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
EM G +P T+ + +I C G I A + M+ P ++ +I
Sbjct: 778 AEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIIS 837
Query: 220 KLDQ 223
Q
Sbjct: 838 GFCQ 841
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A + + + + PDV TYTAI+ GFC++G EA +L +E +G+ + VT
Sbjct: 808 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 867
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L+ ++ G P +T+ +I LC G + A LL M++
Sbjct: 868 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 927
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ ++ L
Sbjct: 928 IGLQPNIFTYNSIVNGL 944
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA +++ + GL D TYT +MD +CK G ++A E+L E + +G+
Sbjct: 948 GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ------ 1001
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +TFN ++ C G + LL M G P+ T+ + L+K+
Sbjct: 1002 ------------PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 1048
>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g09680
gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 607
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A L + G+KPD TYT +MD FCK G + +LL E
Sbjct: 464 GRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSD--------- 514
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
GH+P +T+N ++ LC +G++ A +LL M G +P +++ L++
Sbjct: 515 ---------GHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLE 563
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 23/180 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
+ N K+G ++SD + + + Q T V F + + VG ++E + + ++
Sbjct: 246 LMNKFCKEG---NISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQME 302
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------- 165
+PDV+TY+A+++ CK + + A L +E +RG+ N V L+
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEID 362
Query: 166 -------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L G P + +N ++ C G + A ++ M G P + ++ LI
Sbjct: 363 LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLI 422
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------ 165
GL+PD TYT ++DGFC+ G A+E+ E + G+ + V L+
Sbjct: 410 GLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDA 469
Query: 166 -----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+ L G P +T+ ++ A C G LL M G +PS ++++L+
Sbjct: 470 ERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNG 529
Query: 221 L 221
L
Sbjct: 530 L 530
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ- 166
+ M + + G +VY + +M+ FCK G ++A ++ +E +R + VV+ L+
Sbjct: 225 WGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLING 284
Query: 167 RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
++G++ P T++ +I ALC K+ A L M + G IP+
Sbjct: 285 YCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPN 344
Query: 211 RTSHDMLI 218
LI
Sbjct: 345 DVIFTTLI 352
>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1603
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 20/172 (11%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
++ D +L M +V Q + + H G + EA ++ N+ +DGL P T+T
Sbjct: 1415 NLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFT 1474
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR--------------LEM 170
I+ +C+ G A + +E GV N +T LI L R LE
Sbjct: 1475 VIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLER 1534
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
G + T+ +I C VG A+ F M+++G P +H L+K D
Sbjct: 1535 GLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKGFD 1586
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +++A E+ M + ++GL+PD TYT ++ C+ G EA ++ N I G+ + VT
Sbjct: 1413 TGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVT 1472
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ + LE G P IT+N +I ALC +G+ A M
Sbjct: 1473 FTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEML 1532
Query: 204 EHGKIPSRTSHDMLI 218
E G + ++ ++ +LI
Sbjct: 1533 ERGLVANKYTYTLLI 1547
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L++G + A+E+ + +G+ D TY ++ G CK G +A EL + + G+ +
Sbjct: 1376 LILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDC 1435
Query: 159 VTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
+T L+ + G +P +TF +I A C G ++ A
Sbjct: 1436 ITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRK 1495
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M E G P+ ++++LI L
Sbjct: 1496 MLEEGVEPNEITYNVLIHAL 1515
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 18/121 (14%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L G VE A ++ GL PDV TY ++++G+CK G EA+ L +
Sbjct: 1236 LQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGD---------- 1285
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L+R G P +T+N +I C +G + +A +L M E G +P+ ++ +L+
Sbjct: 1286 ------LRR--AGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILM 1337
Query: 219 K 219
K
Sbjct: 1338 K 1338
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 17/160 (10%)
Query: 79 LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
+ A+ +L + T + + G ++EA + +++ GL P V TY ++DG+C++G
Sbjct: 1251 MRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGD 1310
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNN 181
EA L E E+G NV T L+ + L G P +N
Sbjct: 1311 LEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNT 1370
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I A +G I +A L ++ G ++++LI L
Sbjct: 1371 RICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGL 1410
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 18/124 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-------VTQNVVTL--------- 161
G++P + TY ++D F K GR ++ LL E RG VT NVV
Sbjct: 1114 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLE 1173
Query: 162 --IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+L++ + + + T+N +I L G + K L M G +P+ +++ +I
Sbjct: 1174 EAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIH 1233
Query: 220 KLDQ 223
L Q
Sbjct: 1234 GLLQ 1237
>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
Length = 327
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
++ G V++ ++L + GL+PD++ + A++ G C+ G + A E + +G +V
Sbjct: 36 ILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRYISAKGYAPDV 95
Query: 159 VTLIQLL-----QR------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
++ LL QR L G P +T++ +I +LC GK+ +A+ LL +
Sbjct: 96 ISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCRDGKVEEAVSLLKV 155
Query: 202 MYEHGKIPSRTSHDMLIKKLDQQ 224
M E G P S+D LI ++
Sbjct: 156 MKEQGLTPDAYSYDPLIAAFCKE 178
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VEEA +L +K GL PD Y+Y ++ FCK R + A+E L I G
Sbjct: 144 GKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGC------- 196
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P + +N ++ LC GK +AL + + E G P+ +S++ L L
Sbjct: 197 -----------LPDIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSAL 245
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 42/217 (19%)
Query: 15 LLVDSPSRSPSAAESLDL----KENPRSLQAQRFVDKIKASPLKERIDI----FNSIKKD 66
+L+ S R E++ L KE + A + I A + R+D+ S+ D
Sbjct: 135 ILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISD 194
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G + ++N +L L + D A+K F +G V G P+V +Y
Sbjct: 195 GCLPDIVNYNTILSTLCKNGKADEALKIFEK---LGEV-------------GCPPNVSSY 238
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186
+ G A+ ++ E + + + P IT+N++I L
Sbjct: 239 NTLFSALWSSGHKIRALGMILEMLSKDID------------------PDEITYNSLISCL 280
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
C + +A+ LL M PS S+++++ L +
Sbjct: 281 CRDAMVDQAIELLVDMESSVYQPSVISYNIVLLGLSK 317
>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
Length = 592
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++A+++L ++ KPD Y ++D FCK G + A LLNE ++ + +++T
Sbjct: 192 GHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITY 251
Query: 162 IQLLQR--------------LEMGHI---PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ LEM H+ P TFN+VI LC GK+ A ++ M E
Sbjct: 252 TSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIE 311
Query: 205 HGKIPSRTSHDMLI 218
G P+ ++++++
Sbjct: 312 KGVEPNEITYNVVM 325
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+A E++ + G++P+ TY +MDG+C G+ A + + I++G+ ++++
Sbjct: 297 GKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISY 356
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+QL + + + G P +T + +++ L VG+ A + M
Sbjct: 357 TALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQA 416
Query: 205 HGKIPSRTSHDMLI 218
G IP+ +H L+
Sbjct: 417 AGHIPNLYTHCTLL 430
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQ 156
G++++A+ + GL PDV TYTA++ G+C+ G +EA ++L + + G T
Sbjct: 472 GKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTY 531
Query: 157 NVV 159
NV+
Sbjct: 532 NVI 534
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 37/191 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
++ + + + +F I ++G S+ + LL L + + A FF
Sbjct: 364 VEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNL 423
Query: 96 -------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ G VEEA ++ ++ YTA+++G CK G+ ++A
Sbjct: 424 YTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAH----- 478
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
T + LI L H P IT+ +I C G + +A +L M ++G +
Sbjct: 479 -----ATFEKLPLIGL-------H-PDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCL 525
Query: 209 PSRTSHDMLIK 219
P +++++++
Sbjct: 526 PDNRTYNVIVR 536
>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
diamantinensis]
Length = 284
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G SV +N L+ + + +G ++E + + + G
Sbjct: 109 VFDAITKWGLRPSVVSYNTLM----------------NGYXRLGDLDEGFRLKSAMLASG 152
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVY+Y+ +++G CK + ++A EL +E + +G+ N VT L+
Sbjct: 153 VQPDVYSYSVLINGLCKESKMDDANELFDEMLVKGLAPNGVTFTTLIDGHCKKGRVDLAM 212
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 213 EIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMGMKGLKPDKITYTTLI 269
Score = 42.7 bits (99), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P V +Y +M+G+ ++G +E L +
Sbjct: 88 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYXRLGDLDEGFRLKSA 147
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V + L+ L EM G P +TF +I C G+
Sbjct: 148 MLASGVQPDVYSYSVLINGLCKESKMDDANELFDEMLVKGLAPNGVTFTTLIDGHCKKGR 207
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 208 VDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKK 240
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
G +++A +++ + GLKPD TYT ++DG CK G + A E
Sbjct: 241 GDLKQANDLIDEMGMKGLKPDKITYTTLIDGCCKEGNLDTAFE 283
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +++A + ++ GLKPDVYTYT ++D CK G + A +LL E ++ G+
Sbjct: 517 AGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIK----- 571
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +T+N ++ C G++ LL M E P+ T+++ L+K+
Sbjct: 572 -------------PTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQ 618
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++EA ++L + L D TYT ++DG+CK G+ EA ++ N ++RGV NVVT
Sbjct: 412 AGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVT 471
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L L EM G T+N++I LC G + +A+ + M
Sbjct: 472 YTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMD 531
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P ++ LI L
Sbjct: 532 AAGLKPDVYTYTTLIDAL 549
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A+++L + ++G+KP + TY +M+GFC GR +LL +E+ + N T
Sbjct: 553 GELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTY 612
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+++ +G+ P T+N +I+ C + +A M E
Sbjct: 613 NSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIE 672
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G + +S+ LI+ L+++
Sbjct: 673 KGFRLTASSYSALIRLLNKK 692
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 41/157 (26%)
Query: 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111
PL E I++F + + +V +N LL L GRVE+A ++
Sbjct: 246 PLDEAIELFQGLP----DKNVCSYNILLKVLCG----------------AGRVEDARQLF 285
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171
+ + PDV TY ++ G+C +G A++LL++ + RGV
Sbjct: 286 DEMAS---PPDVVTYGILIHGYCALGELENAVKLLDDMVARGVE---------------- 326
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
P + +V+ LC G++ AL ++ M H I
Sbjct: 327 --PNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVI 361
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 27/205 (13%)
Query: 41 AQRFVDKIKASPLKERIDIFNSI-----KKDGTNWSVSDFNDLLMALVMLNEQ--DTAVK 93
A + +D + A ++ ++ S+ K + +++ D++ V+L+E T +
Sbjct: 313 AVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLS 372
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F N G + A ++ GL D TYT +++G C+ G EA ++L E + R
Sbjct: 373 GFCNK---GDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARR 429
Query: 154 VTQNVVTLIQLL----QRLEM-------------GHIPRTITFNNVIQALCGVGKIHKAL 196
+ + VT L+ +R +M G P +T+ + LC G + A
Sbjct: 430 LDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAAN 489
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
LL M G + +++ LI L
Sbjct: 490 ELLHEMSNKGLELNACTYNSLINGL 514
>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
Length = 1153
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 104/209 (49%), Gaps = 40/209 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA----------LVMLNEQDT-AVK--F 94
+K+ E ++++ ++ +DG + SV ++ L+++ L +LNE + VK
Sbjct: 189 VKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNV 248
Query: 95 FSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA------ 142
+S + + R +EAY++L +++ G KPDV T+T ++ C GR ++A
Sbjct: 249 YSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWK 308
Query: 143 -------------MELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189
+ LL++ + G +Q+V+ + + + G+ +++ V+ ALC V
Sbjct: 309 MKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAM--VADGYNDNIVSYTAVVDALCQV 366
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G++ +AL + M E G P + S++ LI
Sbjct: 367 GRLDEALAVFDEMKEKGISPEQYSYNSLI 395
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 33/180 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
++I+N++ DG N ++ + ++ AL VGR++EA + +K
Sbjct: 338 MEIWNAMVADGYNDNIVSYTAVVDALCQ----------------VGRLDEALAVFDEMKE 381
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI-------------Q 163
G+ P+ Y+Y +++ GF K + A+EL N G + N T + +
Sbjct: 382 KGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLK 441
Query: 164 LLQRLE----MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+QR E G +P N V+ +L G++ A + + + + G P ++ M+IK
Sbjct: 442 AIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIK 501
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 37/195 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
+K+ L++ ID++ ++ +G + + + LL L+ + A F+
Sbjct: 854 VKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNC 913
Query: 97 --------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
H + G E ++ + G+ PD+ +YT ++D C GR N+ +
Sbjct: 914 TIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFR- 972
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
Q LE+G P I +N +I L +I +A+ L M + G +
Sbjct: 973 -----------------QLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIV 1015
Query: 209 PSRTSHDMLIKKLDQ 223
P+ +++ LI L +
Sbjct: 1016 PNLYTYNSLILHLGK 1030
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI--- 162
EA E+ + DG+ P V TY+ +M F K + + LLNE RGV NV +
Sbjct: 196 EAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICI 255
Query: 163 -------------QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
Q+L ++E G P +T VIQ LC G++ A + + M +
Sbjct: 256 RVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQK 315
Query: 209 PSRTSHDMLIKK 220
P R ++ L+ K
Sbjct: 316 PDRVTYITLLDK 327
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 34/176 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KAS E ++ F+ + + G V N L+ DT K G+ EA+
Sbjct: 505 KASKADEAMNFFSDMVETGCVPDVLALNSLI---------DTLYKG-------GKGNEAW 548
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ +K ++P TY ++ G + G+ E M LL E +T ++
Sbjct: 549 KLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEE-----MTHSI---------- 593
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
H P IT+N V+ L G+++ A+ +L+ M E G P +S++ ++ L ++
Sbjct: 594 ---HPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKE 646
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 33/181 (18%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E +FN K G + +N L+ LV N D A F+ +
Sbjct: 756 EAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTE----------------M 799
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QRL 168
K G PD +TY I+D K R E + + E +G VT ++ +RL
Sbjct: 800 KRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRL 859
Query: 169 EM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
E G P T+ ++ L GK+ A L M E+G P+ T +++L
Sbjct: 860 EQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNIL 919
Query: 218 I 218
+
Sbjct: 920 L 920
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 28/150 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K+ ++E + +FN +KK G ++ +N L++ L G+ EA
Sbjct: 995 KSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGK----------------AGKASEAA 1038
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL---------LNEAIERG-VTQNV 158
+M + G KP+V+TY A++ G+ G ++ A L A+ G V +N+
Sbjct: 1039 QMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKTALISGLVDENL 1098
Query: 159 VTLIQLL--QRLEMGHIPRTITFNNVIQAL 186
+ + + L + G P T+N ++ A+
Sbjct: 1099 INIAEGLFAEMKRRGCGPDQFTYNLILDAI 1128
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
DL+ ++ T FS + G + A L ++ G+ + YTY ++ K
Sbjct: 132 DLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKS 191
Query: 137 GRSNEAMELLNEAIERGVT----------------QNVVTLIQLLQRLEM-GHIPRTITF 179
G EAME+ +E G++ ++V T++ LL +E G P ++
Sbjct: 192 GFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSY 251
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I+ L + +A +L M + G P +H ++I+ L
Sbjct: 252 TICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVL 293
>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
Length = 544
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 19/137 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++EA + ++ G+ P+VYTYTA++D + G+ A ELL + I+ G N T
Sbjct: 264 GRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATF 323
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK--IHKALLLLFLM 202
++ Q ++G P IT+N +++ CG G+ + A+ +L M
Sbjct: 324 NAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRM 383
Query: 203 YEHGKIPSRTSHDMLIK 219
G IP + + ++K
Sbjct: 384 IAKGCIPDCHTFNPMLK 400
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ----------------- 163
PDV YT ++ +C+ GR +EA + E + GVT NV T
Sbjct: 248 PDVVLYTTLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQEL 307
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
L Q ++ G P T TFN +++A G+ + L + M + G P +++ L++
Sbjct: 308 LCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLME 363
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 20/124 (16%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN--EAMELLNEAIERGVT 155
H+ GR E+ ++ ++ G +PD+ TY +M+ C G+SN AM++L I +G
Sbjct: 330 HVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGC- 388
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
IP TFN +++ + +G ++ A L M E P+ +++
Sbjct: 389 -----------------IPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYN 431
Query: 216 MLIK 219
+L++
Sbjct: 432 LLMR 435
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 22/122 (18%)
Query: 104 VEEAYEMLMNVKND----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+E++ +M++ +K D G++P+V TY A+++ FC G A L E +E +
Sbjct: 439 LEKSMDMVLRIKRDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALK--- 495
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P ++ V+ L G++ + L+ +M + G I SR ++D L +
Sbjct: 496 --------------PTKPVYDMVLALLRKAGQLRRHEELVEMMVDRGFI-SRPANDALWR 540
Query: 220 KL 221
+
Sbjct: 541 AI 542
>gi|302761606|ref|XP_002964225.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
gi|300167954|gb|EFJ34558.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
Length = 580
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Query: 102 GRVEEAYEMLMNVKN-----------DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
G+VE A ++L ++ N DG KPDV Y+ ++D C +G ++E ++
Sbjct: 343 GKVEAACQLLEDLTNGSRESEQLLGGDGCKPDVVMYSIVIDALCAMGMTDEGFVVVKAME 402
Query: 151 ERGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIH 193
ERGV + V +LL+ + E G P I++N ++ ALC G+
Sbjct: 403 ERGVKPDAVVYTIFLYAFCRSARLDDACRLLEMMVEAGCYPDVISYNTLLFALCSAGQEE 462
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A L +M E G P+ ++ LI+ L
Sbjct: 463 EACRLFQVMVETGIEPNVFTYTQLIRAL 490
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G VE+A ++L ++ KPD + YT +++GFCK+G N
Sbjct: 221 LGMVEQAEKVLKTMEESDCKPDKFIYTRVINGFCKLG-------------------NFKN 261
Query: 161 LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+ LL R+ E G+ P + F+ +I LC K +AL++L + E G P ++
Sbjct: 262 AVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTY 316
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G + A +L +K G PD + I+ G CK + +EA+ +L +IE G + VT
Sbjct: 256 LGNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVT 315
Query: 161 LIQLLQRLEMGHIPRT-ITFNNVIQALCGVGKIHKALLLL 199
+L Q + P T + ++ +++ LC GK+ A LL
Sbjct: 316 YFKLAQERK---CPATNLLYSRLMKCLCKTGKVEAACQLL 352
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 73/204 (35%), Gaps = 44/204 (21%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNE----------------------QDTAVKFFS 96
IFN ++ G + +N + AL L D V+ F
Sbjct: 88 IFNELRHQGQEFPAHIYNVIFGALAKLQRFQDVFRMVEDLMAKNFTFSDSTADALVRIFC 147
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKP--DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
L V ++A L + + GL+ + Y +++G CK R +EA+ L V
Sbjct: 148 KALAV---DKAVRFLKWMSSKGLQVAMSTFEYNCLIEGLCKGDRIDEALRLYELMRGNNV 204
Query: 155 TQNVVT---LIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALL 197
++ T +I+ + +L M P + VI C +G A++
Sbjct: 205 PADIFTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTRVINGFCKLGNFKNAVV 264
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
LL M E G P D +I L
Sbjct: 265 LLGRMKEAGYAPDAVVFDCIIGGL 288
>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
Length = 486
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 36/199 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV-------------- 104
+FN + K G V ++ L+ L ++ TA+ L G V
Sbjct: 260 LFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLC 319
Query: 105 -----EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
EAY +L +K G PDV Y ++ GFC+ GR+ +A ++L + E G N +
Sbjct: 320 RKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNAL 379
Query: 160 TLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ L+ L EM G IP ++ +I LC GK+ +A +L +M
Sbjct: 380 SYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMM 439
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ P ++ +L+ ++
Sbjct: 440 TKQTLAPHESTWSVLLMRI 458
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 36/203 (17%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------------- 97
E I F+ + + G FN LL+ L+ +TA+ F
Sbjct: 186 EAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILI 245
Query: 98 --HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
H ++ AY + + G PDV TY+ +M G C+ + A+ +L+E + +G
Sbjct: 246 RAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYV 305
Query: 156 QNVVTLIQLLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLL 198
+ +T LL L MG P I +N VI C G+ A +
Sbjct: 306 PDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQI 365
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
L M E+G +P+ S+ L+ L
Sbjct: 366 LRDMPENGCLPNALSYRTLVNGL 388
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 17/132 (12%)
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-----NVV----- 159
++ ++ DG + I++ + +VG NEA++ ++ +E G NV+
Sbjct: 155 LIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLI 214
Query: 160 ------TLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
T + L ++L E G P T T+N +I+A C K+ A L M++ G IP
Sbjct: 215 EHKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVE 274
Query: 213 SHDMLIKKLDQQ 224
++ +L++ L ++
Sbjct: 275 TYSILMQGLCRK 286
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA----------LVMLNEQDT-AVK--F 94
+K+ +E ++++ + DG SV ++ L++A L +L E + VK
Sbjct: 296 VKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNV 355
Query: 95 FSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+S + + R +EAY +L ++N+G KPDV T+T ++ C GR ++A ++ +
Sbjct: 356 YSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 415
Query: 149 AIERGVTQNVVTLIQLLQR----------LEM-------GHIPRTITFNNVIQALCGVGK 191
+ + VT I LL + +E+ G+ + + VI ALC VG+
Sbjct: 416 MKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGR 475
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +AL + M + G +P + S++ LI
Sbjct: 476 VFEALEMFDEMKQKGIVPEQYSYNSLI 502
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 33/180 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
++I+N++K DG N +V + ++ AL VGRV EA EM +K
Sbjct: 445 MEIWNAMKADGYNDNVVAYTAVIDALCQ----------------VGRVFEALEMFDEMKQ 488
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-------------LIQ 163
G+ P+ Y+Y +++ GF K R +A+EL G N T I+
Sbjct: 489 KGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIK 548
Query: 164 LLQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+QR E+ G +P + N V+ L G++ A + + G P ++ M+IK
Sbjct: 549 AIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIK 608
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 34/176 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA +++ ++FN + + G + + +N LL + H + G E+
Sbjct: 996 LKAGRIEDAENLFNEMLEYGCKANCTIYNILL----------------NGHRIAGNTEKV 1039
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ ++ + G+ PD+ +YT I+D CK G+ N+ L Q
Sbjct: 1040 CHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDG------------------LTYFRQL 1081
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
LEMG P IT+N +I L ++ +A+ L M + G +P+ +++ LI L +
Sbjct: 1082 LEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1137
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KAS E + IF + ++ V N L+ DT K GR +EA+
Sbjct: 612 KASKFDEAVKIFYDMIENNCVPDVLAVNSLI---------DTLYK-------AGRGDEAW 655
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ +K L+P TY ++ G + G+ E M LL E
Sbjct: 656 RIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHS---------------- 699
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ P IT+N ++ LC G ++ AL +L+ M G IP +S++ +I L
Sbjct: 700 --NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 750
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI--- 162
EA E+ + DG+ P V TY+ +M F K + LL E GV NV +
Sbjct: 303 EALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICI 362
Query: 163 -------------QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
++L ++E G P IT +IQ LC G+I A + + M + +
Sbjct: 363 RVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQK 422
Query: 209 PSRTSHDMLIKKL 221
P R ++ L+ K
Sbjct: 423 PDRVTYITLLDKF 435
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K+ L+E + +FN ++K G ++ +N L++ L G+ EA
Sbjct: 1102 KSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK----------------AGKAAEAG 1145
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+M + G KP+V+TY A++ G+ G ++ A I G N
Sbjct: 1146 KMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 97 NHLMVGRVEE-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L+ G V+E A + +K G PD +TY ++D K R E +++ E
Sbjct: 884 NSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHR 943
Query: 152 RGVTQNVVTLIQLL------QRLE-----------MGHIPRTITFNNVIQALCGVGKIHK 194
+G VT ++ +RLE G P T+ ++ L G+I
Sbjct: 944 KGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIED 1003
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A L M E+G + T +++L+
Sbjct: 1004 AENLFNEMLEYGCKANCTIYNILL 1027
>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EA ++ + G KPDV++Y +++G+CK R EA +L NE I +G+T
Sbjct: 166 VFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLT-------- 217
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P +++N +I LC +G++ +A L M +G +P ++ +L+ +
Sbjct: 218 ----------PDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCK 267
Query: 224 Q 224
Q
Sbjct: 268 Q 268
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G A + + G +PDV TY+ I+D CK R NEA+++ + +G++ N+ T
Sbjct: 23 IGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFT 82
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+Q L + +P +TF+ +I C G + +A +L M
Sbjct: 83 YNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMT 142
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
E G P+ ++ L+ Q
Sbjct: 143 EMGVEPNVVTYSSLMNGYSLQ 163
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV EA ++ +K G+ P+++TY +++ G C R EA +LNE + + N+VT
Sbjct: 60 RVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFS 119
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ EMG P +T+++++ ++ +A L +M
Sbjct: 120 LLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITK 179
Query: 206 GKIPSRTSHDMLI 218
G P S+++LI
Sbjct: 180 GCKPDVFSYNILI 192
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------- 168
G +PDV+TYT I++G CK+G + A L + E G +VVT ++ L
Sbjct: 5 GYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 64
Query: 169 --------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G P T+N++IQ LC + +A +L M +P+ + +LI
Sbjct: 65 LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLI 122
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 34/162 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + E +FN + G + +N L+ L L GR+ EA+
Sbjct: 197 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQL----------------GRLREAH 240
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ N+ +G PD+ TY+ ++DGFCK G +A L R + +
Sbjct: 241 DLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLF-----RAMQSTYLK-------- 287
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
P + +N +I A+C + +A L ++ G P+
Sbjct: 288 -----PNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPN 324
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1080
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA----------LVMLNEQDT-AVK--F 94
+K+ +E ++++ + DG SV ++ L++A L +L E + VK
Sbjct: 171 VKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNV 230
Query: 95 FSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+S + + R +EAY +L ++N+G KPDV T+T ++ C GR ++A ++ +
Sbjct: 231 YSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 290
Query: 149 AIERGVTQNVVTLIQLLQR----------LEM-------GHIPRTITFNNVIQALCGVGK 191
+ + VT I LL + +E+ G+ + + VI ALC VG+
Sbjct: 291 MKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGR 350
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +AL + M + G +P + S++ LI
Sbjct: 351 VFEALEMFDEMKQKGIVPEQYSYNSLI 377
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 33/180 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
++I+N++K DG N +V + ++ AL VGRV EA EM +K
Sbjct: 320 MEIWNAMKADGYNDNVVAYTAVIDALCQ----------------VGRVFEALEMFDEMKQ 363
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-------------LIQ 163
G+ P+ Y+Y +++ GF K R +A+EL G N T I+
Sbjct: 364 KGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIK 423
Query: 164 LLQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+QR E+ G +P + N V+ L G++ A + + G P ++ M+IK
Sbjct: 424 AIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIK 483
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 34/176 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA +++ ++FN + + G + + +N LL + H + G E+
Sbjct: 871 LKAGRIEDAENLFNEMLEYGCKANCTIYNILL----------------NGHRIAGNTEKV 914
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ ++ + G+ PD+ +YT I+D CK G+ N+ L Q
Sbjct: 915 CHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDG------------------LTYFRQL 956
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
LEMG P IT+N +I L ++ +A+ L M + G +P+ +++ LI L +
Sbjct: 957 LEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1012
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 34/176 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KAS E + IF + ++ V N L+ DT K GR +EA+
Sbjct: 487 KASKFDEAVKIFYDMIENNCVPDVLAVNSLI---------DTLYK-------AGRGDEAW 530
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ +K L+P TY ++ G + G+ E M LL E
Sbjct: 531 RIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHS---------------- 574
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ P IT+N ++ LC G ++ AL +L+ M G IP +S++ +I L ++
Sbjct: 575 --NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 628
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 30 LDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
L++ P + +D + K+ L+E + +FN ++K G ++ +N L++ L
Sbjct: 957 LEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK---- 1012
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G+ EA +M + G KP+V+TY A++ G+ G ++ A
Sbjct: 1013 ------------AGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGR 1060
Query: 149 AIERGVTQNVVTLIQLLQRL 168
I G N T +QL +L
Sbjct: 1061 MIVGGCLPNSSTYMQLPNQL 1080
Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI--- 162
EA E+ + DG+ P V TY+ +M F K + LL E GV NV +
Sbjct: 178 EALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICI 237
Query: 163 -------------QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
++L ++E G P IT +IQ LC G+I A + + M + +
Sbjct: 238 RVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQK 297
Query: 209 PSRTSHDMLIKKL 221
P R ++ L+ K
Sbjct: 298 PDRVTYITLLDKF 310
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 97 NHLMVGRVEE-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L+ G V+E A + +K G PD +TY ++D K R E +++ E
Sbjct: 759 NSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHR 818
Query: 152 RGVTQNVVTLIQLL------QRLE-----------MGHIPRTITFNNVIQALCGVGKIHK 194
+G VT ++ +RLE G P T+ ++ L G+I
Sbjct: 819 KGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIED 878
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A L M E+G + T +++L+
Sbjct: 879 AENLFNEMLEYGCKANCTIYNILL 902
>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 38/209 (18%)
Query: 48 IKASPLKERIDIFNS-IKKDGTNWSVSDFNDLLMALV---MLNE-QDTAVKF-------- 94
I+A+ ++ ID FN+ I +D W V N LL ALV M+ E +D K
Sbjct: 161 IRANRIENAIDCFNAMICQDVIPW-VPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGD 219
Query: 95 -FSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
F+ H+MV GRVEEA E K G+K D Y+ I+ CK SN +ELL
Sbjct: 220 HFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLE 279
Query: 148 EAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVG 190
E ERG + T ++ + + G + ++++ C G
Sbjct: 280 EMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQG 339
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ AL L + E G P++ ++ +LI+
Sbjct: 340 NLDSALNLFNKITEDGLFPNKVTYSVLIE 368
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA +L N+ N G+ P+V +Y ++ G C+ G + A + ++ + R + NVVT
Sbjct: 443 GKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTY 502
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ Q L + P TFN +I LC VG++ +A L E
Sbjct: 503 SILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLE 562
Query: 205 HGKIPSRTSHDMLI 218
G IPS +++ ++
Sbjct: 563 EGFIPSCMTYNSIV 576
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 17/171 (9%)
Query: 65 KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
K G + D D +++L + T + VG++ EA + L N +G P
Sbjct: 511 KKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCM 570
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QRLEMGHIPR--- 175
TY +I+DGF K G + A+ + E E GV+ NVVT L+ R+++ R
Sbjct: 571 TYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEM 630
Query: 176 --------TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ +I C + A L F + E G P+R ++ +I
Sbjct: 631 REKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMI 681
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
A + G ++ A + + DGL P+ TY+ +++G C G +A EL +
Sbjct: 328 ATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMK 387
Query: 151 ERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIH 193
G+ +V + LL + ++ G + T+N ++ LC GK+
Sbjct: 388 LNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCG-VANIFTYNIMMSWLCKGGKMD 446
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLI 218
+A LL M G +P+ S++ +I
Sbjct: 447 EACSLLDNMVNQGMVPNVVSYNDMI 471
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 27/154 (17%)
Query: 74 DFNDLLMALV----MLNEQ-----DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
D N++ ALV M+N++ T L GR+ A ++ M + + G+ PD+
Sbjct: 686 DLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDII 745
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQ 184
T+ +++G C G+ A ++L E + +T P + +N +I
Sbjct: 746 TFHVLVNGLCNKGQLENARKILEEMDRKNMT------------------PSVLIYNTLIA 787
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G + +A L M + G +P ++D+LI
Sbjct: 788 GYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILI 821
>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Cucumis sativus]
Length = 697
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++ A EM ++ N G+ P++ TY ++ GFC+ G ++A ELL +E ++ T
Sbjct: 490 MDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNS 549
Query: 164 LLQRLEMGHI-----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L H P IT+N +I + C +G + ++ LL M HG
Sbjct: 550 LIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHG 609
Query: 207 KIPSRTSHDMLIK 219
P S + LI+
Sbjct: 610 IQPDTFSFNALIQ 622
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A E+L + +PD++T+ +++DG C+ + A E +E V NV+T
Sbjct: 523 GNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITY 582
Query: 162 ----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+++++ I P T +FN +IQ G + KA L M
Sbjct: 583 NILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLR 642
Query: 205 HGKIPSRTSHDMLIKKL 221
G P ++ LIK L
Sbjct: 643 LGIQPDNYTYGALIKSL 659
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 40/206 (19%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-VKF------------FSNHLMV-- 101
+++F I G N + +N ++ AL+ N D A +KF F+ ++++
Sbjct: 214 VEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHG 273
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL----------N 147
G V+EA ++ ++ G P+V+TYT ++DGF R+ EA ++L N
Sbjct: 274 VCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPN 333
Query: 148 EAIERGVTQNVVTLIQ-------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
EA R + V I LL+ +E + +N++ L +A++ L
Sbjct: 334 EATMRSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFLI 393
Query: 201 LMYEHGKIPSRTSHDM----LIKKLD 222
+ G +PS ++ ++ ++KKLD
Sbjct: 394 KTGKEGYVPSSSTFNITLACVLKKLD 419
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V + +L +K G++PD +++ A++ G+ R +A +L + + G+
Sbjct: 592 IGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQ----- 646
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
P T+ +I++LC G+ KA + M E+G P
Sbjct: 647 -------------PDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTP 682
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
R ++A ++ ++ G++PD YTY A++ CK GR ++A E+ E G T + T
Sbjct: 629 RFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYT 686
>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g16890, mitochondrial-like
[Cucumis sativus]
Length = 688
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++ A EM ++ N G+ P++ TY ++ GFC+ G ++A ELL +E ++ T
Sbjct: 481 MDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNS 540
Query: 164 LLQRLEMGHI-----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L H P IT+N +I + C +G + ++ LL M HG
Sbjct: 541 LIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHG 600
Query: 207 KIPSRTSHDMLIK 219
P S + LI+
Sbjct: 601 IQPDTFSFNALIQ 613
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A E+L + +PD++T+ +++DG C+ + A E +E V NV+T
Sbjct: 514 GNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITY 573
Query: 162 ----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+++++ I P T +FN +IQ G + KA L M
Sbjct: 574 NILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLR 633
Query: 205 HGKIPSRTSHDMLIKKL 221
G P ++ LIK L
Sbjct: 634 LGIQPDNYTYGALIKSL 650
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 19/129 (14%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-VKF------------FSNHLMV-- 101
+++F I G N + +N ++ AL+ N D A +KF F+ ++++
Sbjct: 214 VEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHG 273
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V+EA ++ ++ G P+V+TYT ++DGF R+ E ++L ER V N
Sbjct: 274 VCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPN 333
Query: 158 VVTLIQLLQ 166
T+ L+
Sbjct: 334 EATMRSLVH 342
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V + +L +K G++PD +++ A++ G+ R +A +L + + G+
Sbjct: 583 IGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQ----- 637
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
P T+ +I++LC G+ KA + M E+G P
Sbjct: 638 -------------PDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTP 673
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
R ++A ++ ++ G++PD YTY A++ CK GR ++A E+ E G T + T
Sbjct: 620 RFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYT 677
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA----------LVMLNEQDT-AVK--F 94
+K+ +E ++++ + DG SV ++ L++A L +L E + VK
Sbjct: 250 VKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNV 309
Query: 95 FSNHLMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+S + + R +EAY +L ++N+G KPDV T+T ++ C GR ++A ++ +
Sbjct: 310 YSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWK 369
Query: 149 AIERGVTQNVVTLIQLLQR----------LEM-------GHIPRTITFNNVIQALCGVGK 191
+ + VT I LL + +E+ G+ + + VI ALC VG+
Sbjct: 370 MKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGR 429
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ +AL + M + G +P + S++ LI
Sbjct: 430 VFEALEMFDEMKQKGIVPEQYSYNSLI 456
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 33/180 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
++I+N++K DG N +V + ++ AL VGRV EA EM +K
Sbjct: 399 MEIWNAMKADGYNDNVVAYTAVIDALCQ----------------VGRVFEALEMFDEMKQ 442
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-------------LIQ 163
G+ P+ Y+Y +++ GF K R +A+EL G N T I+
Sbjct: 443 KGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIK 502
Query: 164 LLQRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+QR E+ G +P + N V+ L G++ A + + G P ++ M+IK
Sbjct: 503 AIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIK 562
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 34/176 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA +++ ++FN + + G + + +N LL + H + G E+
Sbjct: 950 LKAGRIEDAENLFNEMLEYGCKANCTIYNILL----------------NGHRIAGNTEKV 993
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ ++ + G+ PD+ +YT I+D CK G+ N+ L Q
Sbjct: 994 CHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDG------------------LTYFRQL 1035
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
LEMG P IT+N +I L ++ +A+ L M + G +P+ +++ LI L +
Sbjct: 1036 LEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1091
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 34/176 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KAS E + IF + ++ V N L+ DT K GR +EA+
Sbjct: 566 KASKFDEAVKIFYDMIENNCVPDVLVVNSLI---------DTLYK-------AGRGDEAW 609
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ +K L+P TY ++ G + G+ E M LL E
Sbjct: 610 QIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHS---------------- 653
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ P IT+N ++ LC G ++ AL +L+ M G IP +S++ +I L ++
Sbjct: 654 --NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 707
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K+ L+E + +FN ++K G ++ +N L++ L G+ EA
Sbjct: 1056 KSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK----------------AGKAAEAG 1099
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+M + G KP+V+TY A++ G+ G ++ A I G N T
Sbjct: 1100 KMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1151
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 33/181 (18%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E ++ K G + +N L+ LV N D A F+ +
Sbjct: 817 EAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAE----------------M 860
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QRL 168
K G PD +TY ++D K R E +++ E +G VT ++ +RL
Sbjct: 861 KELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRL 920
Query: 169 E-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
E G P T+ ++ L G+I A L M E+G + T +++L
Sbjct: 921 EQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNIL 980
Query: 218 I 218
+
Sbjct: 981 L 981
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + + +++ N++ K+G +N +L + G+ +EA
Sbjct: 248 KAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL----------------HGYCSSGQPKEAI 291
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
L +++DG++P+V TY+++M+ CK GRS EA ++ + +RG+ ++ T LLQ
Sbjct: 292 GTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGY 351
Query: 168 ------LEM----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+EM G P FN +I A K+ +A+L+ M +HG P+
Sbjct: 352 ATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNV 411
Query: 212 TSHDMLIKKL 221
+ +I L
Sbjct: 412 VCYGTVIDVL 421
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 60 FNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
FNSI K+G DL++ + + + T + G+++EA ++L ++
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
+ G+KPD+ TY +++G+C+V R ++A+ L E + GV+ N++T +LQ L H R
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF--HTRR 601
Query: 176 T 176
T
Sbjct: 602 T 602
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 25/210 (11%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDT 90
L +N RS +A++ D + L+ I + ++ + T ++ + + LL +V Q
Sbjct: 316 LCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPD 375
Query: 91 AVKFFSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
F N L+ +V++A + ++ GL P+V Y ++D CK G ++AM
Sbjct: 376 HHVF--NILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLY 433
Query: 146 LNEAIERGVTQNVVTLIQL-----------------LQRLEMGHIPRTITFNNVIQALCG 188
+ I+ G+T N++ L L+ L+ G TI FN++I + C
Sbjct: 434 FEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCK 493
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G++ ++ L LM G P +++ LI
Sbjct: 494 EGRVIESEKLFDLMVRIGVKPDIITYNTLI 523
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 25/153 (16%)
Query: 94 FFSNHLMVG-----RVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
F N+L+ G R +EA E+L + +D G PDV +Y +++GF K G S++A
Sbjct: 164 FSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYST 223
Query: 146 LNEAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCG 188
+E ++RG+ +VVT ++ L + G +P +T+N+++ C
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 283
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G+ +A+ L M G P+ ++ L+ L
Sbjct: 284 SGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYL 316
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 22/121 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ + L NV G + D T+T ++ G C R+++AM++
Sbjct: 106 GRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI---------------- 149
Query: 162 IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH---GKIPSRTSHDML 217
+L+R+ E+G IP ++NN+++ LC + +AL LL +M + G P S++ +
Sbjct: 150 --VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTV 207
Query: 218 I 218
+
Sbjct: 208 L 208
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------- 98
+++ SI K GT +S +N +L L N D A++ F N
Sbjct: 607 ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 666
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L GR++EA ++ +GL PDV TY+ + + + G E +L E G + +
Sbjct: 667 LKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADS 726
Query: 159 VTLIQLLQR-LEMGHIPRTITF 179
L ++++ L+ G I R T+
Sbjct: 727 RMLNSIVRKLLQRGDITRAGTY 748
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 83/202 (41%), Gaps = 36/202 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------------- 102
+F+ + + G + +N L+ + + D A K ++ + VG
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYC 562
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----- 154
R+++A + + + G+ P++ TY I+ G R+ A EL + G
Sbjct: 563 RVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELS 622
Query: 155 TQNVV-----------TLIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLM 202
T N++ +++ Q L + + T TFN +I AL G++ +A L
Sbjct: 623 TYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAH 682
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+G +P ++ ++ + L +Q
Sbjct: 683 SANGLVPDVRTYSLMAENLIEQ 704
>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
gi|194700420|gb|ACF84294.1| unknown [Zea mays]
gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
Length = 598
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 19/149 (12%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + F+ G + +A+E+ + G P+ TY+ I+ G K G+ +A+ELLNE
Sbjct: 412 NTIISFWCQK---GLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNE 468
Query: 149 AIERGVTQN---------------VVTLIQLLQRLE-MGHIPRTITFNNVIQALCGVGKI 192
+G + + ++Q++ +L+ G P+T+ +N V+ LC GK
Sbjct: 469 MANKGFNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKT 528
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A+ +L M G +P +++ +LI+ L
Sbjct: 529 DYAIDVLADMVSCGCMPDESTYIILIEGL 557
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++A E+L ++ + G KP+ Y ++ GFC + R +A E+L+E + N TL
Sbjct: 247 GDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATL 306
Query: 162 ---------IQLLQRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LLQ++ + G +T+N VI +C G + AL LL M
Sbjct: 307 NVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQS 366
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ ++K L
Sbjct: 367 FGCKPDIVTYNTVLKGL 383
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 18/122 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A E+L N+++ G KPD+ TY ++ G C R +A EL+ + ++QN
Sbjct: 352 GNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIK-----MSQN---- 402
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P TFN +I C G I +A + M E G P+ T++ +I L
Sbjct: 403 ---------DRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGL 453
Query: 222 DQ 223
+
Sbjct: 454 TK 455
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
+A E++ ++ +G +P+ TY I+D C+ G ++A ELLN RG N V +L
Sbjct: 216 QALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVL 275
Query: 166 QRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ EM P T N +I LC G + K L L M +HG
Sbjct: 276 KGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCT 335
Query: 209 PSRTSHDMLIKKLDQQ 224
+ +++ +I + +Q
Sbjct: 336 ANVVTYNAVISGMCEQ 351
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A +L + G PDV TY ++ CK +A+EL++
Sbjct: 177 GRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELID-------------- 222
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
R E G P +T+N +I A+C G + +A LL + G P+ +++ ++K
Sbjct: 223 ---FMRAE-GCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLK 276
Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 23/131 (17%)
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAME-------------------LLNEAIERG- 153
V+ G + TY A++DG+C+ G +A L++ ERG
Sbjct: 119 VEACGPEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGR 178
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
V +V L +L R G P +T+N ++QA C +AL L+ M G P+ +
Sbjct: 179 VADALVVLDGMLCR---GCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVT 235
Query: 214 HDMLIKKLDQQ 224
++++I + ++
Sbjct: 236 YNVIIDAMCRE 246
>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
montevidense]
Length = 376
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 37/212 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA +K D++ + ++G+ +V+ FN ++ L E D + G VE++
Sbjct: 36 FKAGRIKNCFDLWELMGREGSR-NVASFNTMMRGLFNNGEVDEVFSIWELMKESGFVEDS 94
Query: 108 --YEMLMN-----------------VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
Y +L++ K +G D + Y+A++ G CK+G+ ++A+ +LN
Sbjct: 95 TTYGILVHGFCKNGYNNKSLHVLEIAKQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNG 154
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGK 191
IE G N I++ + L H P +T+N +I LC +
Sbjct: 155 MIESGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRHCSPTIVTYNTLINGLCKGER 214
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+A L+ M E G PS ++ +LIK L Q
Sbjct: 215 FAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQ 246
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 33/188 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L + + + N + + G + +N L+ L+ A KF E+A
Sbjct: 141 KMGKLDKAVSVLNGMIESGCKPNTQVYNALINGLL------GASKF----------EDAI 184
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-- 166
+ + P + TY +++G CK R EA +L+ E +E+G +V+T L++
Sbjct: 185 RVFKELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGL 244
Query: 167 ----RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
++EM G P N +I LC VGK A L F M P+
Sbjct: 245 CQDHKVEMALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWNCAPNL 304
Query: 212 TSHDMLIK 219
+++ L++
Sbjct: 305 VTYNTLME 312
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 33/168 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K E D+ + + G N SV ++ L+ L QD +VE A
Sbjct: 211 KGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGLC----QDH------------KVEMAL 254
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
++ V + G KPDV + ++ G C VG++ A EL + N+VT L++
Sbjct: 255 QLWNQVISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGF 314
Query: 168 ----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L G +P I++N ++ LC +I A+L L
Sbjct: 315 YKGGDTRNALVIWARILRNGLLPDIISYNITLKGLCACNRISVAILFL 362
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAI 129
N L L + ++ A+ F+ M+ G++++A +L + G KP+ Y A+
Sbjct: 111 NKSLHVLEIAKQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNTQVYNAL 170
Query: 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGH 172
++G + +A+ + E R + +VT L+ + LE G
Sbjct: 171 INGLLGASKFEDAIRVFKELGTRHCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGW 230
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P IT++ +I+ LC K+ AL L + G P H++LI L
Sbjct: 231 NPSVITYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDVQMHNILIHGL 279
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 18/137 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A + + + PD Y A+++GF K GR +L E + R ++NV +
Sbjct: 4 GAINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLW-ELMGREGSRNVASF 62
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++ L E G + + T+ ++ C G +K+L +L + +
Sbjct: 63 NTMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEIAKQ 122
Query: 205 HGKIPSRTSHDMLIKKL 221
G ++ +I L
Sbjct: 123 EGGALDAFAYSAMISGL 139
>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 17/112 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A + + +++ G+ PD+ TY+ +++GFC G+ +EA LL E + R ++ +VVT
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTF 225
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
L+ L EM G P +T N ++ LC GK+ AL
Sbjct: 226 SGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDAL 277
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M ++ + P++ T+ ++ G+CK G ++ +EL E RG+ N +T I
Sbjct: 353 RLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYI 412
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P TIT N++ L ++ KAL +L
Sbjct: 413 TLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAML 466
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 37/207 (17%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-------- 101
S L + F + K G + ++ FN LL L + + A+ F H M
Sbjct: 28 CSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF--HQMCKPNVVTFT 85
Query: 102 ---------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
GRV EA +L + DGL+P+ TY I+DG CK+G + A+ LL + E
Sbjct: 86 TLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEL 145
Query: 153 G-VTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHK 194
+ +VV ++ L EM G P +T++ +I C GK +
Sbjct: 146 SHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSE 205
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A LL M P + LI L
Sbjct: 206 AQRLLQEMLVRKISPDVVTFSGLINAL 232
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 46/196 (23%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKK-----------DGTNWSVSDFNDLLMALV 83
P + +D + + LK+ +++F +++K +G V +N L+ L+
Sbjct: 255 PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLI 314
Query: 84 MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
NE G+ EA E+ + + G+ PD TY+++++G CK R +EA
Sbjct: 315 --NE--------------GKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEAT 358
Query: 144 ELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ + + + N+V TFN +I C G + L L M
Sbjct: 359 QMFDSMGSKSFSPNIV------------------TFNTLITGYCKAGMVDDGLELFCEMG 400
Query: 204 EHGKIPSRTSHDMLIK 219
G + + ++ LI+
Sbjct: 401 RRGIVANAITYITLIR 416
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A ++L + + G+ P+V T ++DG C G+ +A+E+ +A+++ + +
Sbjct: 236 GDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMF-KAMQKSMMD--IDA 292
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+E P T+N +I L GK +A L M G +P ++ +I L
Sbjct: 293 THAFNGVE----PDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGL 348
Query: 222 DQQ 224
+Q
Sbjct: 349 CKQ 351
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL----------QRLEMG 171
D+Y++ ++ FC + A+ + + G +VT LL + L++
Sbjct: 14 DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73
Query: 172 H---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
H P +TF ++ LC G++ +A+ LL M E G P++ ++ ++ +
Sbjct: 74 HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 126
>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 17/112 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A + + +++ G+ PD+ TY+ +++GFC G+ +EA LL E + R ++ +VVT
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTF 225
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
L+ L EM G P +T N ++ LC GK+ AL
Sbjct: 226 SGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDAL 277
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M ++ + P++ T+ ++ G+CK G ++ +EL E RG+ N +T I
Sbjct: 353 RLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYI 412
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P TIT N++ L ++ +AL +L
Sbjct: 413 TLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAML 466
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 37/207 (17%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-------- 101
S L + F + K G + ++ FN LL L + + A+ F H M
Sbjct: 28 CSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF--HQMCKPNVVTFT 85
Query: 102 ---------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
GRV EA +L + DGL+P+ TY I+DG CK+G + A+ LL + E
Sbjct: 86 TLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEL 145
Query: 153 G-VTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHK 194
+ +VV ++ L EM G P +T++ +I C GK +
Sbjct: 146 SHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSE 205
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKL 221
A LL M P + LI L
Sbjct: 206 AQRLLQEMLVRKISPDVVTFSGLINAL 232
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 46/196 (23%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKK-----------DGTNWSVSDFNDLLMALV 83
P + +D + + LK+ +++F +++K +G V +N L+ L+
Sbjct: 255 PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLI 314
Query: 84 MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143
NE G+ EA E+ + + G+ PD TY+++++G CK R +EA
Sbjct: 315 --NE--------------GKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEAT 358
Query: 144 ELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ + + + N+V TFN +I C G + L L M
Sbjct: 359 QMFDSMGSKSFSPNIV------------------TFNTLITGYCKAGMVDDGLELFCEMG 400
Query: 204 EHGKIPSRTSHDMLIK 219
G + + ++ LI+
Sbjct: 401 RRGIVANAITYITLIR 416
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K S L E +F+S+ + ++ FN L+ + + G V++
Sbjct: 350 KQSRLDEATQMFDSMGSKSFSPNIVTFNTLI----------------TGYCKAGMVDDGL 393
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + G+ + TY ++ GF KVG N ++++ E I GV + +T+ +L L
Sbjct: 394 ELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGL 453
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A ++L + + G+ P+V T ++DG C G+ +A+E+ +A+++ + +
Sbjct: 236 GDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMF-KAMQKSMMD--IDA 292
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+E P T+N +I L GK +A L M G +P ++ +I L
Sbjct: 293 THAFNGVE----PDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGL 348
Query: 222 DQQ 224
+Q
Sbjct: 349 CKQ 351
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL----------QRLEMG 171
D+Y++ ++ FC + A+ + + G +VT LL + L++
Sbjct: 14 DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73
Query: 172 H---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
H P +TF ++ LC G++ +A+ LL M E G P++ ++ ++ +
Sbjct: 74 HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 126
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 34/174 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA +E +F +K+ G + V +N T + F G+V++A
Sbjct: 598 VKAGFSRETYKLFYEMKEQGLHLDVLAYN-------------TVIDGFCKS---GKVDKA 641
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y++L +K GL+P V TY +++DG K+ R +EA L EA GV NVV
Sbjct: 642 YQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVV-------- 693
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++++I VG+I +A L+L + + G P+ + + L+ L
Sbjct: 694 ----------IYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDAL 737
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL-----LNEAIERGVT 155
VG+V+ A++ +K GL PD TYT ++ CK R +EA+EL LN ++
Sbjct: 286 VGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYA 345
Query: 156 QNVVTL-----------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
N + + LL+R + G IP I +N ++ L GK+ +AL + M
Sbjct: 346 YNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMR 405
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ P+ T++++LI L
Sbjct: 406 QDAA-PNLTTYNILIDML 422
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
+K+ LKE + ++K + S + L+ AL N D + F
Sbjct: 179 VKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANV 238
Query: 98 HLMV---------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
HL GR++ A +L +K++ D+ Y +D F KVG+ + A + +E
Sbjct: 239 HLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHE 298
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMGH-IPRTITFNNVIQALCGVGK 191
+G+ + VT ++L + L++ +P +N +I GK
Sbjct: 299 MKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGK 358
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+A LL G IPS +++ ++ L ++
Sbjct: 359 FDEAYSLLERQKRKGCIPSVIAYNCILTCLGRK 391
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV++AY + + + P+V YT+++ F K GR + ++ E + RG +
Sbjct: 496 GRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCS------ 549
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P + N+ + + G++ K L + G +P S+ +LI L
Sbjct: 550 ------------PDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGL 597
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++EA N+KN P+ TY+ +++G C + + N+A E ++G+
Sbjct: 743 IDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLK-------- 794
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P IT+ +I L G + +A L G +P ++ +I+ L
Sbjct: 795 ----------PNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGL 842
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---NHLMVGRVEEAYEMLMNVK 115
I NS+ K+G D DL+ + + E+ + F S + +VG++E+A+ +L +
Sbjct: 514 IINSLCKEGRVVEAQDIFDLV---IHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMI 570
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ G++PDV TY+A++DG+C+ GR ++ + L E + +GV +T +L L
Sbjct: 571 SVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGL 623
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 37/199 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN------------------- 97
+++FNS++ +G S +N L+ A D A+ F+
Sbjct: 387 LNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAA 446
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ- 156
+GR+ +A + + GLKPD Y +++ GFC G +A EL++E + RG+ +
Sbjct: 447 FSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRP 506
Query: 157 NVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
N V ++ L +G P ITFN++I VGK+ KA +L
Sbjct: 507 NTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVL 566
Query: 200 FLMYEHGKIPSRTSHDMLI 218
M G P ++ L+
Sbjct: 567 DAMISVGIEPDVVTYSALL 585
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 20/118 (16%)
Query: 103 RVEEAYEML--MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
R + A ++L M K+ G P+V +Y ++ GF + G ++A L +E +++GV
Sbjct: 205 RSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVV----- 259
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +T+++ I ALC + KA L+L M +G P + +++ +I
Sbjct: 260 -------------PDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMI 304
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 17/144 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ ++G+ +E M + GL PD++T + M CK G+S EA E + +G
Sbjct: 306 GYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKP 365
Query: 157 NVVT----------------LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLL 199
++VT ++ L +E G + +N +I A G + +A+L+
Sbjct: 366 DLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIF 425
Query: 200 FLMYEHGKIPSRTSHDMLIKKLDQ 223
M E G +P ++ +I +
Sbjct: 426 TQMQERGVMPDAWTYGTVIAAFSR 449
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +A + + G+ PDV TY++ +D CK ++A +L + I G + VT
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTY 300
Query: 162 IQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ + G +P T N+ + +LC GK +A M
Sbjct: 301 NCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAA 360
Query: 205 HGKIPSRTSHDMLI 218
G P ++ +L+
Sbjct: 361 KGHKPDLVTYSVLL 374
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 20/118 (16%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------------ 168
P V TY +MD C+ R L ++ G+ +V+ LL+ L
Sbjct: 117 PTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNV 176
Query: 169 ------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH--GKIPSRTSHDMLI 218
E+G P TI+++ V+++LC + +AL LL M + G P+ S++ +I
Sbjct: 177 LLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVI 234
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
K + E DIF+ + G V FN L+ ++ + + A + VG
Sbjct: 520 KEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVV 579
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
R+++ + + + G+KP TY I+ G GR+ A ++ +E
Sbjct: 580 TYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEM 639
Query: 150 IERGVTQNVVTL----------------IQLLQRLEMGHIPRTIT-FNNVIQALCGVGKI 192
IE G T ++ T I L ++L ++ I N +I A+ V K
Sbjct: 640 IESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKR 699
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A L + G +P+ +++ ++I L
Sbjct: 700 EEANELFDSISATGLVPNASTYGVMITNL 728
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 53/172 (30%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC--------------- 134
T + S+ G+ +EA E ++ G KPD+ TY+ ++ G+
Sbjct: 334 TCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSM 393
Query: 135 --------------------KVGRSNEAMELLNEAIERGVTQNVVTLIQLL--------- 165
K G +EAM + + ERGV + T ++
Sbjct: 394 EGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRL 453
Query: 166 --------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
Q + MG P TI +N++IQ C G + KA L+ M G IP
Sbjct: 454 ADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRG-IP 504
>gi|356523086|ref|XP_003530173.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g17670-like [Glycine max]
Length = 456
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA ++ + +G K D + Y IM G+C + R +EA+E+ N+ E GV ++VT
Sbjct: 239 LREAMRLVSVLHEEGFKLDCFVYNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNT 298
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L E G+ P +T+ +++ LC G AL LL M G
Sbjct: 299 LIFGLSKSGRVTEARKLLRVMAEKGYFPDEVTYTSLMNGLCRKGDALGALALLGEMEAKG 358
Query: 207 KIPSRTSHDMLIKKL 221
P+ +++ L+ L
Sbjct: 359 CSPNACTYNTLLHGL 373
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E I+++N +K++G + +N L+ L GRV EA ++L +
Sbjct: 276 EAIEVYNKMKEEGVEPDLVTYNTLIFGLSK----------------SGRVTEARKLLRVM 319
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH-I 173
G PD TYT++M+G C+ G + A+ LL E +G + N T LL L +
Sbjct: 320 AEKGYFPDEVTYTSLMNGLCRKGDALGALALLGEMEAKGCSPNACTYNTLLHGLCKARLV 379
Query: 174 PRTITFNNVIQA 185
+ + F VI+A
Sbjct: 380 EKAVKFYQVIRA 391
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA ++ + L+PD TYTA++DG+CK G+ EA L N+ ++ G+T N+VT
Sbjct: 407 GRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTY 466
Query: 162 IQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYE 204
L L + G + T+N+++ LC G I +A+ L+ M
Sbjct: 467 TALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEV 526
Query: 205 HGKIPSRTSHDMLI 218
G P ++ L+
Sbjct: 527 AGFHPDAVTYTTLM 540
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+K + +F + G W+ + +N + +L L GRV EA+++L+
Sbjct: 234 IKIALKVFVEFPEVGVCWNTASYNIITHSLCQL----------------GRVVEAHQLLL 277
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
++ G PDV +Y+ +++G+C+VG ++L+ E +G+
Sbjct: 278 QMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLK----------------- 320
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T+N VI LC GK+ +A +L M G P + LI
Sbjct: 321 -PNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLI 365
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 37/191 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-------------VKFF 95
K +KE + N + + G ++ + L L E DTA + +
Sbjct: 440 KEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIY 499
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ + +V G +++A +++ +++ G PD TYT +MD +CK A ELL +
Sbjct: 500 TYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQM 559
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
++R + P +TFN ++ C G + LL M E G +P
Sbjct: 560 LDRELQ------------------PTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMP 601
Query: 210 SRTSHDMLIKK 220
+ T+++ LIK+
Sbjct: 602 NATTYNSLIKQ 612
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V AY + ++ + PD TYTA++ G C+ GR EA +L +E + + + + VT
Sbjct: 371 LGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVT 430
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ Q L+MG P +T+ + LC G++ A LL M
Sbjct: 431 YTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMC 490
Query: 204 EHG 206
G
Sbjct: 491 RKG 493
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA +L + ++G+ PD YT ++DGFCK+G + A L +E +R ++ + +T
Sbjct: 337 GKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITY 396
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L + G + P +T+ +I C GK+ +A L M +
Sbjct: 397 TAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQ 456
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ ++ L L
Sbjct: 457 MGLTPNIVTYTALADGL 473
>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
Length = 414
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 18/142 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
V +V + +E+L ++ DG+ P+V TYT+++ G+CK GR +A + N+ ++ G N V
Sbjct: 130 VKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTV 189
Query: 160 TLIQLL----QRLEMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L+ + L+M P +TFN++I C G++ A+ + M
Sbjct: 190 TYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEM 249
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+H P+ + ++I L Q
Sbjct: 250 GQHHIQPNVYTFSIIIHSLCTQ 271
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 36/189 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
KA +K+ ++N + + GT + +N L+ + ++AV+ +
Sbjct: 165 KAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVV 224
Query: 96 ------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ G++++A + M + ++P+VYT++ I+ C RS EA+ LL E
Sbjct: 225 TFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRE- 283
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
L R ++ +P+T +N +I LC GK+ +A L++ M E G P
Sbjct: 284 --------------LNMRADI--VPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHP 327
Query: 210 SRTSHDMLI 218
+ ++ +LI
Sbjct: 328 DKYTYTILI 336
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 23/146 (15%)
Query: 102 GRVEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR ++A + + DGL PDV+++ ++ G C+VG +A+EL+ E G + + +T
Sbjct: 60 GRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTIT 119
Query: 161 ---LIQLLQRLEM---GH------------IPRTITFNNVIQALCGVGKIHKALLLLFLM 202
L+ L R++ GH +P +T+ +VI C G++ A + M
Sbjct: 120 QNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDM 179
Query: 203 YEHGKIPSRTSHDMLI----KKLDQQ 224
+ G P+ ++++LI K LD +
Sbjct: 180 LQSGTRPNTVTYNVLINGYGKALDME 205
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+EA ++ +++ G PD YTYT ++ G C GR EA+ L ++ +E G + +T+
Sbjct: 308 GKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGCRPDNITI 367
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A +L G + + Y Y +++ GR+ +A+ L I+ G+
Sbjct: 25 GLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDAVALFESWIQDGL------- 77
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ P +FN VI+ +C VG + KAL L+ M E G P + ++L+ L
Sbjct: 78 ----------YSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGL 127
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 34/212 (16%)
Query: 28 ESLDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E LD + P + +D K L+E +I +K + ++ FN LL L
Sbjct: 242 EMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQ 301
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
+EEA +L ++ G PD +TYT + DG K G + ++ L
Sbjct: 302 ----------------MMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLS 345
Query: 147 NEAIERGVT----------------QNVVTLIQLLQR-LEMGHIPRTITFNNVIQALCGV 189
EA+ +GV N+ ++L++ LE G P + FN ++ C V
Sbjct: 346 EEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQV 405
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G I+KA + M G P+ +++ L+KK
Sbjct: 406 GDINKAYTTIEKMEAVGLRPNHVTYNSLVKKF 437
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ + VG + +AY + ++ GL+P+ TY +++ FC++ EA + + + +E+GV
Sbjct: 400 NGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVL 459
Query: 156 QNVVT----------------LIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLL 198
NV T Q+L+ +E G P I++ +I LC I +A ++
Sbjct: 460 PNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVI 519
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
L M G +P+ ++MLI
Sbjct: 520 LGDMVHRGVVPNAQIYNMLI 539
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 102/263 (38%), Gaps = 75/263 (28%)
Query: 13 SVLLVDSPSRSPSAAESL-DLKENP-RSLQAQRFVDKIKASPL-KERIDIFNSIKKDGTN 69
S+LL SP SPS +L L P + L + + S + E +++ +KKDG
Sbjct: 85 SMLLPKSPFSSPSHLYTLFSLSSTPMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVL 144
Query: 70 WSVSDFNDLLMALVMLNEQDTAVKFFS---------NHLMVGR----------VEEAYEM 110
SV+ N L +LV + ++ FS + M G+ ++ A E+
Sbjct: 145 PSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIEL 204
Query: 111 LMNVKNDGLKPDVY-----------------------------------TYTAIMDGFCK 135
+ +K G+ P V+ TY ++DG+CK
Sbjct: 205 MTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCK 264
Query: 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
VG+ EA + ER +NV P ITFN+++ LC + +A
Sbjct: 265 VGQLEEAFNIR----ERMKVENVE--------------PTIITFNSLLNGLCRAQMMEEA 306
Query: 196 LLLLFLMYEHGKIPSRTSHDMLI 218
+L M +G +P R ++ L
Sbjct: 307 QRVLEEMEVYGFVPDRFTYTTLF 329
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 18/125 (14%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+ G++++A+ + + P + TY +++G CK G+ EA L +E +G++ +V
Sbjct: 544 IAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDV- 602
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
IT+N++I G + KAL L M + G P+ ++ LI
Sbjct: 603 -----------------ITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIA 645
Query: 220 KLDQQ 224
++
Sbjct: 646 GCGKE 650
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
+EEA + + + G+ P+V TY ++DG+ + + ++L E ++G+ NV++
Sbjct: 443 MEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGC 502
Query: 161 LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LI L + + G +P +N +I C GK+ A M
Sbjct: 503 LINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVARE 562
Query: 207 KIPSRTSHDMLIKKLDQQ 224
+P+ ++++LI L ++
Sbjct: 563 IVPTLVTYNILINGLCKK 580
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++A + ++ G++PD TY ++ G K GR ++ L+N+ RG+
Sbjct: 685 GDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGL------- 737
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IP+T T++ +I C + A + M+E+G PS + D LI L
Sbjct: 738 -----------IPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICDNLITGL 786
Query: 222 DQQ 224
++
Sbjct: 787 REE 789
>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 547
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 42/212 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------- 98
+A ++E I+ F +++ G SDFN LL L + A K F
Sbjct: 203 RARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCKSRHVEKANKVFDKMKKRRFVPDIK 262
Query: 99 ----LMVG--------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
L+ G R++E Y + +K DG +PDV TY ++ +CK + + A+EL
Sbjct: 263 SYTILLEGWGKEHNLLRLDEVY---LEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELF 319
Query: 147 NEAIER----------------GVTQNVVTLIQLLQRLE-MGHIPRTITFNNVIQALCGV 189
+E + G + + ++ +R + G P T+N+++ A C
Sbjct: 320 HEMEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWS 379
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+I A ++ M +H P+ ++D+++ L
Sbjct: 380 MRIDDAFQVIDEMRKHSAGPNSRTYDIILHHL 411
>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+EA + + +G++ DVY+Y +++ GFC VGR A++LL+E + RG
Sbjct: 224 GLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVY----- 278
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P TFN +I LC +G++ +A ++ +M + G P S++ L+
Sbjct: 279 ------------PDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALM 323
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 18/124 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GRV EAY ++ + G KPD+ +Y A+M+G+C G EA ++ ++ +ER
Sbjct: 294 LGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTA------ 347
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+P I++ +I C V + +A++LL M+ +P +++ L+
Sbjct: 348 ------------LPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDG 395
Query: 221 LDQQ 224
L +
Sbjct: 396 LSKS 399
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 38/237 (16%)
Query: 8 SPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASP-LKERIDIFNSIKKD 66
+PT F+ +L S S S + L + A+ K+ P + + F+ I
Sbjct: 4 NPTYFTTILFTSLRNSSSTTTTFLLLYPFTTFFARTHHKKLHKLPTFNDTVSSFHHILHH 63
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------------NHLMVGRVEE 106
+ FN LL L+ L + V ++ +G++
Sbjct: 64 HPPPPIQHFNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGF 123
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----- 161
A+ +L N+ G + DV T +M G C GR EA+ LL+E ++RG + V
Sbjct: 124 AFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIIN 183
Query: 162 -----------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
IQ+ +++ + P I +N VI LC G + +A L M E+G
Sbjct: 184 GLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENG 240
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ ++A + ++ G+ P++ TY ++DG CK GR A E+
Sbjct: 436 KFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIF---------------- 479
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
QLL G P T+N +I LC G + +A LL+ M + +P+ + D +++ +
Sbjct: 480 QLLS--AKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRAI 536
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-- 153
+ + V V+EA +L + N L PD TY ++DG K GRS +L+ G
Sbjct: 359 NGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQP 418
Query: 154 ---VTQNVV-----------TLIQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+T NV+ + L Q +E+G P T+N ++ LC G++ A +
Sbjct: 419 ADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEI 478
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L+ G P+ +++++I L ++
Sbjct: 479 FQLLSAKGCQPNIRTYNIMIHGLCKE 504
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 42/179 (23%)
Query: 16 LVDSPSRSPSAAESLDLKENPR-SLQAQRFV-------DKIKASPLKERIDIFNSIKKDG 67
L+D S+S + DL E R S Q + D K + + +F I + G
Sbjct: 392 LLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIG 451
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+ ++ +N LL L GR++ A E+ + G +P++ TY
Sbjct: 452 ISPNIRTYNILLDGLCK----------------SGRLKYAKEIFQLLSAKGCQPNIRTYN 495
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186
++ G CK G +EA LL + + ++P ITF+ +++A+
Sbjct: 496 IMIHGLCKEGFLDEAEALLYKMVNN------------------NYLPNYITFDTIVRAI 536
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 17/143 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ + + G V EA ++ + P+V +Y +++G+CKV +EAM LL E + +
Sbjct: 324 NGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLV 383
Query: 156 QNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLL 198
+ VT LL L G IT+N ++ K KAL L
Sbjct: 384 PDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALAL 443
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
+ E G P+ ++++L+ L
Sbjct: 444 FQHIIEIGISPNIRTYNILLDGL 466
>gi|302780865|ref|XP_002972207.1| hypothetical protein SELMODRAFT_17157 [Selaginella moellendorffii]
gi|300160506|gb|EFJ27124.1| hypothetical protein SELMODRAFT_17157 [Selaginella moellendorffii]
Length = 168
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 71/181 (39%), Gaps = 34/181 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------- 100
K + E +F +K N V ++ L+ L D A F + L
Sbjct: 3 CKTGRVPEANRLFGDMKAKFCNLDVIMYSCLIGGFCKLERIDMACMLFDDTLKQAILPDV 62
Query: 101 ------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G V++A +L + PDVYTYT+++DGFCKVGR EA +L
Sbjct: 63 VTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEACRVLKR 122
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+RG NV + + ++ LC G++ AL LL + + G
Sbjct: 123 MAKRGCQPNVADM---------------FAYRVMMDGLCTTGRMSAALELLEAIRQSGTP 167
Query: 209 P 209
P
Sbjct: 168 P 168
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA + ++K DV Y+ ++ GFCK+ R + A L ++ +++ + +VVT
Sbjct: 6 GRVPEANRLFGDMKAKFCNLDVIMYSCLIGGFCKLERIDMACMLFDDTLKQAILPDVVTF 65
Query: 162 IQLL------------QRL--EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ +RL EM P T+ +++ C VG++ +A +L M +
Sbjct: 66 STLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEACRVLKRMAK 125
Query: 205 HGKIPS 210
G P+
Sbjct: 126 RGCQPN 131
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + + +++ N++ K+G +N +L + G+ +EA
Sbjct: 243 KAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL----------------HGYCSSGQPKEAI 286
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
L +++DG++PDV TY+ +MD CK GR EA ++ + +RG+ + T LLQ
Sbjct: 287 GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGY 346
Query: 168 ------LEM----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+EM G P F+ +I A GK+ +A+L+ M + G P+
Sbjct: 347 ATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNA 406
Query: 212 TSHDMLIKKL 221
++ +I L
Sbjct: 407 VTYGAVIGIL 416
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 99/211 (46%), Gaps = 27/211 (12%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDT 90
L +N R ++A++ D + LK I + ++ + T ++ + + LL +V
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370
Query: 91 AVKF------FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
F ++N G+V++A + ++ GL P+ TY A++ CK GR +AM
Sbjct: 371 HYVFSILICAYANQ---GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427
Query: 145 LLNEAIERGVT-QNVV--TLIQ--------------LLQRLEMGHIPRTITFNNVIQALC 187
+ I+ G++ N+V +LI +L+ L+ G TI FN++I + C
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHC 487
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G++ ++ L LM G P+ +++ LI
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLI 518
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 24/130 (18%)
Query: 97 NHLMVGRV---EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+H GRV E+ +E+++ + G+KP+V TY +++G+C G+ +EAM+LL+ + G
Sbjct: 485 SHCKEGRVIESEKLFELMVRI---GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ P T+T++ +I C + ++ AL+L M G P +
Sbjct: 542 LK------------------PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583
Query: 214 HDMLIKKLDQ 223
++++++ L Q
Sbjct: 584 YNIILQGLFQ 593
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 20/139 (14%)
Query: 103 RVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
R +EA E+L + +D G PDV +YT +++GF K G S++A +E ++RG+ +VV
Sbjct: 173 RSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVV 232
Query: 160 TLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ L + G +P +T+N+++ C G+ +A+ L M
Sbjct: 233 TYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM 292
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P ++ +L+ L
Sbjct: 293 RSDGVEPDVVTYSLLMDYL 311
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + + G+++EA ++L + + GLKP+ TY+ +++G+CK+ R +A+ L E G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALC 187
V+ +++T +LQ L E G T+N ++ LC
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLC 627
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 20/121 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLN-EAIERGVTQ--NVVTLIQLL--------- 165
G P+V++Y ++ G C RS EA+ELL+ A +RG +VV+ ++
Sbjct: 153 GCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDS 212
Query: 166 --------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+ L+ G +P +T+N++I ALC + KA+ +L M ++G +P +++ +
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 272
Query: 218 I 218
+
Sbjct: 273 L 273
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 22/121 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ + L NV G + D +T ++ G C R+++AM++
Sbjct: 101 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI---------------- 144
Query: 162 IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE---HGKIPSRTSHDML 217
+L+R+ E+G IP ++N +++ LC + +AL LL +M + G P S+ +
Sbjct: 145 --VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202
Query: 218 I 218
I
Sbjct: 203 I 203
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 36/202 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------------- 102
+F + + G +V +N L+ + + D A+K S + VG
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----- 154
R+E+A + +++ G+ PD+ TY I+ G + R+ A EL E G
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 617
Query: 155 TQNVV-----------TLIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLM 202
T N++ +Q+ Q L + + TFN +I AL VG+ +A L
Sbjct: 618 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+G +P+ ++ ++ + + Q
Sbjct: 678 SSNGLVPNYWTYRLMAENIIGQ 699
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 26/149 (17%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------- 98
+++ I + GT +S +N +L L D A++ F N
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 661
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT--Q 156
L VGR +EA ++ + ++GL P+ +TY + + G E +L + G T
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 721
Query: 157 NVVTLI--QLLQRLEMGHIPRTITFNNVI 183
++ I +LLQR G I R T+ ++I
Sbjct: 722 GMLNFIVRELLQR---GEITRAGTYLSMI 747
>gi|224131366|ref|XP_002328521.1| predicted protein [Populus trichocarpa]
gi|222838236|gb|EEE76601.1| predicted protein [Populus trichocarpa]
Length = 186
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 23/128 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------------- 102
+F ++ ++G +V +N ++ + N+ D A K +MVG
Sbjct: 28 VFETMTEEGAEPNVYTYNAVMGGYCLNNQMDEAQKVLD--IMVGKGYAPAVHSYNILTNG 85
Query: 103 -----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
R++EA +L + L PD TY+ +M GFC+VGR EA+ L NE G+ N
Sbjct: 86 NCKRRRLDEAKRLLSKMSEKELTPDTVTYSTLMQGFCQVGRPQEALNLFNEMCSSGLLPN 145
Query: 158 VVTLIQLL 165
++T ++LL
Sbjct: 146 LMTCLKLL 153
>gi|297724097|ref|NP_001174412.1| Os05g0393900 [Oryza sativa Japonica Group]
gi|255676341|dbj|BAH93140.1| Os05g0393900 [Oryza sativa Japonica Group]
Length = 553
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R + AYE++ + +G+ PDV TY+ ++ G C G+ EA+ +L+ +E G
Sbjct: 153 RFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQ------- 205
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+ ++ A C G+IH+A LL M G PS ++++L++ L
Sbjct: 206 -----------PNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEAL 253
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA +L + +G +P+ +TYT I+ +C GR +EA LLN I G + T
Sbjct: 187 GQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATY 246
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ L G P IT+++ + LC G+I K+ L+ M
Sbjct: 247 NVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLS 306
Query: 205 HGKIPSRTSHDMLI 218
+G PS + ++L+
Sbjct: 307 NGLQPSEVTLNILL 320
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 39/205 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALV---------MLNEQDTA------VKFFSN 97
+ E + N++ G S + +N L+ AL L E+ TA V +S+
Sbjct: 224 IHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSS 283
Query: 98 HL----MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++ GR+++++ ++ + ++GL+P T ++DG C+ + A LL + E G
Sbjct: 284 YMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELG 343
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
NVV ++++L + G P + TFN V+ +LC +G++HKA
Sbjct: 344 WDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKA- 402
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
LFL+ + + +++ LI+ L
Sbjct: 403 --LFLLRSKEFVATVITYNTLIRHL 425
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL--NEAIERGVTQNVVTLIQ--- 163
++ ++ G+ P+ +T+ ++ CK+GR ++A+ LL E + +T N TLI+
Sbjct: 369 KLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALFLLRSKEFVATVITYN--TLIRHLS 426
Query: 164 -----------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L Q +E G P IT++ VI LC K AL + E PS
Sbjct: 427 ISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPS 484
>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
Length = 693
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 23/111 (20%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G +++A +M+ ++ + KP+ T+TA+++G CKVG+++EA ELLN++ E T + +T
Sbjct: 353 IGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDIT 412
Query: 161 --------------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191
++Q+LQ+ G P T+ N +I ALC GK
Sbjct: 413 YSVVMHGFRREGKLKESCDVVVQMLQK---GFFPTTVEINLLIHALCKDGK 460
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 19/143 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA E++ + + G +PDV TY+ ++DGFC++G ++A +++ + N VT
Sbjct: 319 GRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTH 378
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL L E P IT++ V+ GK+ ++ ++ M +
Sbjct: 379 TALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQ 438
Query: 205 HGKIPSRTSHDMLIKKL--DQQP 225
G P+ ++LI L D +P
Sbjct: 439 KGFFPTTVEINLLIHALCKDGKP 461
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 36/185 (19%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM 100
AQ + +A L+ + + + ++KDG +S N MA+ +L ++
Sbjct: 133 AQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICN---MAVNVL-------------VV 176
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV------ 154
GRV++A E ++ G++PDVYTY ++ G C R +AME++ ++ G
Sbjct: 177 AGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKIS 236
Query: 155 ----------TQNVVTLIQLLQRL--EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ V + LLQR+ + G P +T+N +I L G +A L FL
Sbjct: 237 YYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEA--LEFLR 294
Query: 203 YEHGK 207
GK
Sbjct: 295 ESEGK 299
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EA E L + + D Y+AI+ FC GR EA E++ E I +G +VVT
Sbjct: 284 GHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTY 343
Query: 162 IQLLQ-----------RLEMGHI------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ R M H+ P T+T ++ LC VGK +A LL E
Sbjct: 344 STVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEE 403
Query: 205 HGKIPSRTSHDMLI 218
PS ++ +++
Sbjct: 404 EWWTPSDITYSVVM 417
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G++ A +L ++ DG PD+ ++ GR ++A+E GV
Sbjct: 142 AGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVE----- 196
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
P T+N +I+ LCG ++ A+ ++ +M ++G P + S+
Sbjct: 197 -------------PDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISY 237
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 18/115 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA ++ + G KPD ++Y ++ G+CK R +EA +L NE I +G+T
Sbjct: 356 IVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLT-------- 407
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P + +N +I LC +G++ +A L M+ +G +P ++ ML+
Sbjct: 408 ----------PDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLL 452
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 26/188 (13%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMN 113
ID F+ +++ +SV ++ L Q AV F + VG+ +A E +
Sbjct: 137 IDCFSHLQRVDLAFSV------FSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDD 190
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
+ G +P VYTYT I++G CK+G + A L + E G NVVT L+ L +
Sbjct: 191 FEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKL 250
Query: 174 -----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P T+N++IQ LC + +A LL M +P+ + ++
Sbjct: 251 VNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNV 310
Query: 217 LIKKLDQQ 224
L+ + ++
Sbjct: 311 LVDAICKE 318
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 34/176 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + E +FN + G ++N L+ L L GR+ EA
Sbjct: 387 KAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQL----------------GRLREAQ 430
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ N+ ++G PD++TY+ ++DGFCK G +A L +++Q
Sbjct: 431 DLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLF----------------RVMQST 474
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ P +N +I A+C G + A L ++ G +P+ + +I L ++
Sbjct: 475 YLK--PDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKE 528
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 37/189 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR----- 103
K + ++ F+ + G +V + ++ L + E A F G
Sbjct: 177 KVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVV 236
Query: 104 --------------VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
V EA ++ +K + PD++TY +++ G C R EA LLNE
Sbjct: 237 TYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEM 296
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ +P TFN ++ A+C GK+ +A + M E G P
Sbjct: 297 TSLNI------------------MPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEP 338
Query: 210 SRTSHDMLI 218
++ L+
Sbjct: 339 DVVTYSSLM 347
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL----------QR 167
GL PD+YT + ++D F + R + A + ++ I+ G+ + VT L+ Q
Sbjct: 125 GLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQA 184
Query: 168 LEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+E G P T+ +I LC +G+ A L M E G P+ ++++LI
Sbjct: 185 VEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDS 244
Query: 221 L 221
L
Sbjct: 245 L 245
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G ++EA E N++ DG PD ++Y I+ GF + + A +L+ E +RG T
Sbjct: 529 GLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587
>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
Length = 465
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
+ +++FN + + G + +N LL AL +N G AY++L +
Sbjct: 171 QAVEVFNRLPRFGCPQTTQVYNALLDALC------------ANGSFAG----AYKLLRRM 214
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV------VTLIQLLQRL 168
G+ PD T++ ++D +C G+ EA L++ ERG V V + RL
Sbjct: 215 ARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGLVRAGRL 274
Query: 169 E-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
E G +P TFN++ +ALC G + A+ LL G P +++ ++
Sbjct: 275 EEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVM 334
Query: 218 I 218
I
Sbjct: 335 I 335
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+EEA + + +G+ PDV T+ ++ + C G A+ LL +A RG+ ++ T
Sbjct: 271 AGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDIST 330
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ LE GH P + +I+ALC G+ A M
Sbjct: 331 YKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMK 390
Query: 204 EHGKIPSRTSHDMLIK 219
G P+R + ML+K
Sbjct: 391 SKGHPPNRPVYVMLVK 406
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 36/180 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
++A L+E + K+G V+ FN L AL + + AV ++
Sbjct: 269 VRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDI 328
Query: 98 ---HLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+M+ GR++EA+ + DG +P Y AI+ CK GR +A +
Sbjct: 329 STYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGD 388
Query: 149 AIERGVTQN---VVTLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGK 191
+G N V L+++ R E G PR TFN+V+ L GK
Sbjct: 389 MKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLRHCGK 448
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++A E+ + G Y A++D C G A +LL +GV
Sbjct: 169 TDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSFAGAYKLLRRMARKGVA-------- 220
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P TF+ ++ A C GK+ +A L M E G P D+L+ L
Sbjct: 221 ----------PDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGL 268
>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
Length = 461
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
+ +++FN + + G + +N LL AL +N G AY++L +
Sbjct: 167 QAVEVFNRLPRFGCPQTTQVYNALLDALC------------ANGSFAG----AYKLLRRM 210
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV------VTLIQLLQRL 168
G+ PD T++ ++D +C G+ EA L++ ERG V V + RL
Sbjct: 211 ARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGLVRAGRL 270
Query: 169 E-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
E G +P TFN++ +ALC G + A+ LL G P +++ ++
Sbjct: 271 EEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVM 330
Query: 218 I 218
I
Sbjct: 331 I 331
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+EEA + + +G+ PDV T+ ++ + C G A+ LL +A RG+ ++ T
Sbjct: 267 AGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDIST 326
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ LE GH P + +I+ALC G+ A M
Sbjct: 327 YKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMK 386
Query: 204 EHGKIPSRTSHDMLIK 219
G P+R + ML+K
Sbjct: 387 SKGHPPNRPVYVMLVK 402
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 36/180 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
++A L+E + K+G V+ FN L AL + + AV ++
Sbjct: 265 VRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDI 324
Query: 98 ---HLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+M+ GR++EA+ + DG +P Y AI+ CK GR +A +
Sbjct: 325 STYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGD 384
Query: 149 AIERGVTQN---VVTLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGK 191
+G N V L+++ R E G PR TFN+V+ L GK
Sbjct: 385 MKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLRHCGK 444
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++A E+ + G Y A++D C G A +LL +GV
Sbjct: 165 TDQAVEVFNRLPRFGCPQTTQVYNALLDALCANGSFAGAYKLLRRMARKGVA-------- 216
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P TF+ ++ A C GK+ +A L M E G P D+L+ L
Sbjct: 217 ----------PDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGL 264
>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 942
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 27 AESLDL-KENPRSLQAQRFVD----KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA 81
A S++L K + R L+ Q+ VD K + P+ I +I + ++ D +L
Sbjct: 712 AHSVELPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSD 771
Query: 82 LVMLN---EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
L++ + T VG+V EA+ + ++ N GL P++ Y A+++G CK G
Sbjct: 772 LLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGN 831
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+ A L N+ +G++ P +T+N +I C G+ +AL L
Sbjct: 832 LDRARRLFNKLARKGLS------------------PTVVTYNTLIDGYCKGGRTTEALEL 873
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
M E G PS ++ LI L
Sbjct: 874 KDKMREEGICPSSITYSTLIHGL 896
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ + +G V +A E+L+++K+ LKPD Y Y ++DGFCK +A +L +E +GV
Sbjct: 404 NGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVN 463
Query: 156 QNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLL 198
VVT LL+ L +GH+ P +T+ ++ A VG +A+++
Sbjct: 464 FTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMI 523
Query: 199 LFLMYEHGKIPSRTSHDMLI 218
G S T ++ +I
Sbjct: 524 WKDALSKGFTKSITLYNTMI 543
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G N++V +N LL N VG VE A + + G+ P+ TY
Sbjct: 461 GVNFTVVTYNTLL----------------KNLFHVGHVEHALHIWNLMHKRGVAPNEVTY 504
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-------------TLIQ----LLQRLE 169
++D F KVG + AM + +A+ +G T+++ L+Q L+ E
Sbjct: 505 CTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKE 564
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLL 198
+G P IT+ +I C VG + +AL L
Sbjct: 565 LGFPPDEITYRTLIDGYCKVGNLVEALKL 593
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + + GL P V TY ++DG+CK GR+ EA+EL ++ E G+
Sbjct: 830 GNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGIC------ 883
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
P +IT++ +I L GK +++ LL M + GK S
Sbjct: 884 ------------PSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAGKGSS 920
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 17/125 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV---TQNVV 159
++ +A E+ + +K G PD TY ++DG+CKVG EA++L + + G+ T+
Sbjct: 551 KLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYN 610
Query: 160 TLI------QLLQRL-----EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+LI + LQ+L EM + P +T+ ++I C G + KA F M +
Sbjct: 611 SLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDK 670
Query: 206 GKIPS 210
G P+
Sbjct: 671 GIAPN 675
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 36/174 (20%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALV---------MLNEQDTAVKF----FSNHLMV---- 101
+F+++ K G S+ N LL LV ++ EQ A+ FS +MV
Sbjct: 208 VFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYC 267
Query: 102 --GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GRV+EA+ + ++ +P+V TY +++DG+ +G A ++L E+G+ +N
Sbjct: 268 KEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSR 327
Query: 160 TLIQLL----QRLEMGHIPRTI-------------TFNNVIQALCGVGKIHKAL 196
T L+ +R +M + I + +I A C G++ AL
Sbjct: 328 TYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDAL 381
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL----------- 146
+ GRV++A + + GLK + ++++G+CK+G N+A E+L
Sbjct: 371 YCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPD 430
Query: 147 ----NEAIERGVTQ-NVVTLIQLLQRLEMGHIPRT-ITFNNVIQALCGVGKIHKALLLLF 200
N ++ Q + + +L + + T +T+N +++ L VG + AL +
Sbjct: 431 SYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWN 490
Query: 201 LMYEHGKIPSRTSHDMLI 218
LM++ G P+ ++ L+
Sbjct: 491 LMHKRGVAPNEVTYCTLL 508
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 82/191 (42%), Gaps = 26/191 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD------TAVK 93
+A FV +++ S + + +NS+ DG S+ D L +++E+ T
Sbjct: 274 EAFNFVKEMERSCCEPNVVTYNSLI-DGY-VSLGDVCGAKKVLALMSEKGIPENSRTYTL 331
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ G++E+A +++ + L D + Y ++ +C GR ++A+ + + ++ G
Sbjct: 332 LIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVG 391
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ N T+ N++I C +G ++KA +L M + P
Sbjct: 392 LKMN------------------TVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYG 433
Query: 214 HDMLIKKLDQQ 224
++ L+ +Q
Sbjct: 434 YNTLLDGFCKQ 444
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 16/111 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K+ L +FN + + G + +V +N L+ + GR EA
Sbjct: 828 KSGNLDRARRLFNKLARKGLSPTVVTYNTLI----------------DGYCKGGRTTEAL 871
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
E+ ++ +G+ P TY+ ++ G G+S +++ LLNE ++ G +V+
Sbjct: 872 ELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAGKGSSVM 922
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 97 NHLMVG--RVEEAYEM---LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L+ G R EE ++ L +KN L P+V TY +++ G+C G ++A + I+
Sbjct: 610 NSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMID 669
Query: 152 RGVTQNVV 159
+G+ N++
Sbjct: 670 KGIAPNII 677
>gi|357486821|ref|XP_003613698.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515033|gb|AES96656.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 749
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA +ML + GL PD Y Y A++ G C VG N A L E E V + + +
Sbjct: 308 GRVGEAAKMLEEMTQIGLTPDAYCYNAVIQGLCDVGLLNRAQSLRLEISEHNVCTHTILI 367
Query: 162 IQLLQR-------------LEMGHIPRTITFNNVIQALCGVGKIHKA 195
++ +R ++G P +TFN +I LC + KA
Sbjct: 368 CEMCKRGMVAEAQELFNQMEKLGCEPSVVTFNTLINGLCKANNLEKA 414
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 21/141 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GR+EEA + +KNDG + +Y+++++ F K R EA + ++G+ +VV
Sbjct: 237 MGRLEEALSFVWMIKNDGFSLNRNSYSSLINAFFKARRYREAHAWYTKMFKQGIVPDVVL 296
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ L ++G P +N VIQ LC VG +++A L +
Sbjct: 297 YAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDAYCYNAVIQGLCDVGLLNRAQSLRLEIS 356
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
EH + +H +LI ++ ++
Sbjct: 357 EH----NVCTHTILICEMCKR 373
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
++P+ YTY ++DGFCK G A E+L+E G+ V++ +L
Sbjct: 150 VEPNFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANNVDEAH 209
Query: 169 -------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
E + P I+ N V+ C +G++ +AL ++++ G +R S+ LI
Sbjct: 210 KLFNDMKETSYPPDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYSSLI 266
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 55/233 (23%)
Query: 30 LDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89
L++ E+ + K + E ++FN ++K G SV FN L+ L N +
Sbjct: 353 LEISEHNVCTHTILICEMCKRGMVAEAQELFNQMEKLGCEPSVVTFNTLINGLCKANNLE 412
Query: 90 TAVKFF---------SNHLMV-----------------------GRVEEAYEMLMNVKND 117
A F S HL + G++ AY+++ ++ +
Sbjct: 413 KAKNLFCKLEVGRRHSLHLSLSQGSGQVSDSARLLKKAKEMCEAGQILRAYKLITDLAGE 472
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG------VTQNVVT----------- 160
+KPD+ TY +++ C N A ++G VT +
Sbjct: 473 -VKPDIITYNILLNALCMDREVNAAYNFFEFLQKKGYPSPDNVTYGTIIKGLFMVDREDE 531
Query: 161 LIQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK-IPSR 211
++ QR++ G P + ++ LC K+ +A L F EH K +PSR
Sbjct: 532 AFKVFQRMQKTGSEPTLSVYRTLMTCLCRKSKVSRAFTLYF---EHLKSLPSR 581
>gi|326525168|dbj|BAK07854.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 500
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 25 SAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84
SA +L L + RS A + S L + ++ G + + +N LL A
Sbjct: 139 SAPSALSLPHSARSYTAV-LAGLVAHSHLPLAHSLLADMRASGFGPTTATYNVLLKA--- 194
Query: 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
+ D A +++A + N+ KPD +Y ++DG C+ R EA E
Sbjct: 195 -HCSDAA----------AHIDDAVRLFRNIP----KPDACSYNTLIDGLCRRSRRVEAQE 239
Query: 145 LLNEAIERGVTQNVV---TLIQLLQR-------LEM-------GHIPRTITFNNVIQALC 187
L +E +E G+ VV T+I L R LEM G P +T++++I LC
Sbjct: 240 LFSEMVENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMGRRGIAPNVVTYSSLIDGLC 299
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
G+ AL LL + + K+P+ + +I L ++
Sbjct: 300 KGGRAASALDLLERLAKEVKLPNTIIYSSVINGLCKE 336
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA E+L ++ G KPD + ++ G C GR+ EA L+E + GV N VT
Sbjct: 337 GLLREAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGVQPNRVTW 396
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L R+ + V+ ALC G++ +A + M G
Sbjct: 397 -SLHVRINVA----------VVTALCVKGEVGRAFQVYQSMRTRG 430
>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
Length = 536
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 18/136 (13%)
Query: 104 VEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ +A EM +VK+ + PDV TYT+++ G+CK G+ EA LL++ + G+ VT
Sbjct: 257 LNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFN 316
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + + G P +TF ++I C VG++ + L M
Sbjct: 317 VLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNAR 376
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ ++ +LI L
Sbjct: 377 GMFPNAFTYSILINAL 392
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 36/162 (22%)
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLM-------------------VGRVEEAYEMLMNVKN 116
N LL LV L+ + A+K F HL VG+ E+A E+L +
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSG 234
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G +PD+ TY ++ GFCK N+A E+ + V P
Sbjct: 235 FGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCS-----------------PDV 277
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+T+ ++I C GK+ +A LL M G P+ + ++L+
Sbjct: 278 VTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLV 319
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A E+ + + G PDV T+T+++DG+C+VG+ ++ L E RG+ N T
Sbjct: 326 GEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTY 385
Query: 162 IQLLQRLE-----------MGH------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L +G IP+ +N VI C GK+++A +++ M +
Sbjct: 386 SILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEK 445
Query: 205 HGKIPSRTSHDMLI 218
P + + +LI
Sbjct: 446 KKCKPDKITFTILI 459
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE-RGVTQNVVTLIQLL 165
A +M +K+DG+ P+ ++ F + G+ + A LL ++ E G V +L+ L
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTL 181
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ L T TFN +I+ LCGVGK KAL LL +M G P
Sbjct: 182 VKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDI 241
Query: 212 TSHDMLIK 219
+++ LI+
Sbjct: 242 VTYNTLIQ 249
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA ++ ++ KPD T+T ++ G C GR EA+ + ++ + G + + +T+
Sbjct: 431 GKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITV 490
Query: 162 IQLLQRL----------EMGHIPRTITFNNVI 183
LL L + I R NNV+
Sbjct: 491 SSLLSCLLKAGMAKEAYHLNQIARKGQSNNVV 522
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 27/153 (17%)
Query: 93 KFFSNHLM----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
K F NH+ VG V EA+ + + G+KP + T ++ G+C+ G S++A
Sbjct: 428 KIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKA 487
Query: 143 MELLNEAIERGVTQNVV---TLIQ-------------LLQRLEM-GHIPRTITFNNVIQA 185
E L I +GV + + TLI + ++E G +P IT+N V+
Sbjct: 488 DEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNG 547
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
C G++ +A L+L M E G P R+++ LI
Sbjct: 548 FCRQGRMQEAELVLRKMIEKGINPDRSTYTALI 580
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T H G + +A + + +KPD+ Y ++DGFCKVG +A EL +
Sbjct: 365 TFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGM 424
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
I R + P IT+ +I A C VG + +A L +M E G P
Sbjct: 425 ISRKI------------------FPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKP 466
Query: 210 SRTSHDMLIK 219
+ + + +IK
Sbjct: 467 TLVTCNTVIK 476
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 61 NSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLK 120
N++ KDG V F + + + T + G +EEA+E++ ++ + GLK
Sbjct: 126 NALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLK 185
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--------------- 165
P ++TY AI++G CK GR A +L E + G++ + T LL
Sbjct: 186 PSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEI 245
Query: 166 --QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L G +P ++F+++I + +AL+ M + G +P + +L+
Sbjct: 246 FGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLM 300
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 33/192 (17%)
Query: 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR 103
V+ + E +IF + + G + F+ L+ D A+ +F +
Sbjct: 230 LVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRD------ 283
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+K GL PD YT +M G+C+ G EA+++ +E +E+G +V+
Sbjct: 284 ----------MKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNT 333
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L L E G +P TF +I C G + KAL L M +
Sbjct: 334 ILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN 393
Query: 207 KIPSRTSHDMLI 218
P +++ LI
Sbjct: 394 IKPDIVAYNTLI 405
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
++A L+E + F ++ G S++ N LL LV ++ VE A
Sbjct: 59 VQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDW----------------VELA 102
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
+E+ V G++ +VYT +++ CK G+ ++ L+E G+ ++VT L+
Sbjct: 103 WEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGA 162
Query: 166 --------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ E+ G P T+N +I LC G+ +A +L M G P
Sbjct: 163 YCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPD 222
Query: 211 RTSHDMLI 218
T+++ L+
Sbjct: 223 TTTYNTLL 230
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A+ + ++ +GL PD+ TY +M+GFC+ GR EA +L + IE+G+ + T
Sbjct: 519 MDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTA 578
Query: 164 LLQRLEMGHIPR 175
L+ GH+ +
Sbjct: 579 LIN----GHVTQ 586
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
GR++EA +L + G+ PD TYTA+++G NEA +E ++RG
Sbjct: 552 GRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRG 603
>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 909
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +++ + +F+ ++ G +V +N L+ + + G ++ A
Sbjct: 408 KRGMIEDALCLFDKMRDKGIKVTVYPYNSLI----------------NGYCKQGSLDRAR 451
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
+L + +GL P +Y+ ++ G C+ G + MEL E ERG+ N T L+
Sbjct: 452 GLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGF 511
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ ++ IP +TFN +I+ C VG I KA L M E G P
Sbjct: 512 CKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDN 571
Query: 212 TSHDMLIKKL 221
++ LI L
Sbjct: 572 YTYRSLISGL 581
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
VEEA+ + + + G+ P+V+ Y A++D CK R ++A L E RG+ N VT
Sbjct: 342 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 401
Query: 164 LLQRL-EMGHIPRTIT----------------FNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L + G I + +N++I C G + +A LL M + G
Sbjct: 402 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 461
Query: 207 KIPSRTSHDMLIKKL 221
P+ S+ LI L
Sbjct: 462 LTPTAASYSPLIAGL 476
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+++EA +++ + G PD +Y+ I+ CK+G N+A EL NE + +G+ +VV
Sbjct: 794 GKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVA 852
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE------- 169
DG P+ T+T +++ CK G A L E + V N T L
Sbjct: 705 DGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEK 764
Query: 170 ---------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
GH+ ++FN +I+ LC GKI +A+ L+ + E G P S+ +I +
Sbjct: 765 AKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHE 824
Query: 221 L 221
L
Sbjct: 825 L 825
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N LM G RV+EA E+ + N G+ D TY ++ GFC++ A+ + ++ I
Sbjct: 260 NVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIR 319
Query: 152 RGVT---QNVVTLIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHK 194
G N +I L++ E +G +P +N +I LC +
Sbjct: 320 LGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDD 379
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G P+ ++ +LI L ++
Sbjct: 380 ADRLFKEMAGRGLEPNEVTYAILIHALCKR 409
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++ A +++ ++++G+K Y +M G CK R EA+E+ N + GVT +
Sbjct: 237 LDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTAD------ 290
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+T+ ++ C + ++ AL + M G +PS + +I +L +
Sbjct: 291 ------------EVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRK 338
Query: 224 Q 224
+
Sbjct: 339 K 339
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 81/240 (33%), Gaps = 71/240 (29%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF----------------- 95
L +++ + + G W+ F L+ + D A + F
Sbjct: 482 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 541
Query: 96 --SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY--------------------------- 126
+ +VG + +A+++ + GLKPD YTY
Sbjct: 542 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 601
Query: 127 --------TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------- 161
TA++ GF + GR E L +E RGV ++V+
Sbjct: 602 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 661
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + E G P I + +I AL + +AL M G P+ +H +LI L
Sbjct: 662 VLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNL 721
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA ++E ID+ + I + G + ++ ++ L + G + +A+
Sbjct: 792 KAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKM----------------GDINKAF 835
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKV-GRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
E+ + GLKPDV Y I +C V G S++A+ + I GV N T LL
Sbjct: 836 ELWNEMLYKGLKPDVVAYN-IFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 894
Query: 168 LEM 170
+ +
Sbjct: 895 ISL 897
>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 917
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 20/148 (13%)
Query: 91 AVKF--FSNHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
AV F F N L + G + +AY++ ++ G P+ + Y +++ GFCKVG+ NEA++L+
Sbjct: 603 AVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVR 662
Query: 148 EAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVG 190
E +RG+ ++ T+ ++ L MG P +T+N +I C
Sbjct: 663 EMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAF 722
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A L+ M + G P T++++ I
Sbjct: 723 DVGGADDLMMKMSDSGWEPDLTTYNIRI 750
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA+ L ++ + G +T ++DG+ ++G N A L NE RGV + V
Sbjct: 547 GSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAF 606
Query: 162 IQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L + G +P +N++I C VGK+++AL L+ M +
Sbjct: 607 AAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNK 666
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P + +M+I L +Q
Sbjct: 667 RGLLPDIFTVNMIICGLCKQ 686
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG++ EA +++ + GL PD++T I+ G CK GR A+E + G++ ++VT
Sbjct: 651 VGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVT 710
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + G P T+N I C V KI++A+++L +
Sbjct: 711 YNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELI 770
Query: 204 EHGKIPSRTSHDMLI 218
G +P+ +++ +I
Sbjct: 771 SVGIVPNTVTYNTMI 785
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 92/189 (48%), Gaps = 26/189 (13%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLM 112
++NS+ G V N+ L + +N++ F+ ++++ GR++ A E M
Sbjct: 640 VYNSLI--GGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFM 697
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------- 161
++ GL PD+ TY ++DG+CK A +L+ + + G ++ T
Sbjct: 698 DMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVR 757
Query: 162 -----IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+ +L+ L +G +P T+T+N +I A+C V H A++L + + +P+ + +
Sbjct: 758 KINRAVMILEELISVGIVPNTVTYNTMINAVCNVILDH-AMILTAKLLKMAFVPNTVTVN 816
Query: 216 MLIKKLDQQ 224
+L+ + +Q
Sbjct: 817 VLLSQFCKQ 825
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
V A +++M + + G +PD+ TY + G+C V + N A+ +L E I G+ N VT
Sbjct: 724 VGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNT 783
Query: 161 -------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
+I + L+M +P T+T N ++ C G KA+
Sbjct: 784 MINAVCNVILDHAMILTAKLLKMAFVPNTVTVNVLLSQFCKQGMPEKAIF 833
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H G+ E+ +L ++ GL D + G C GR +EAM+LL + +G+
Sbjct: 436 AGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLGKGIP 495
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
P + FN++I A G +A +M + G PS ++
Sbjct: 496 ------------------PSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCS 537
Query: 216 MLIKKL 221
L+ L
Sbjct: 538 SLLISL 543
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----------- 168
+PDVY+Y +++ C G+S+ A+ LLN IE G ++ T ++
Sbjct: 320 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARK 379
Query: 169 ------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+MG TI +N +I I +A LL M +P + + L+
Sbjct: 380 YFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLV 435
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+ A +L + +G KP + T+ I+D FCK G A + +E + G++QN +
Sbjct: 337 GQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIV 395
>gi|56201849|dbj|BAD73299.1| fertility restorer B-like [Oryza sativa Japonica Group]
gi|56202086|dbj|BAD73615.1| fertility restorer B-like [Oryza sativa Japonica Group]
Length = 647
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 21/138 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A + N+ KPD +Y ++DG C+ GR EA +L E I G VVT
Sbjct: 290 IDDAVRVFRNIP----KPDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTT 345
Query: 164 LLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L EM G +P +T++++I LC G+ A+ LL M +
Sbjct: 346 LIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKER 405
Query: 207 KIPSRTSHDMLIKKLDQQ 224
K+P+ ++ +I L ++
Sbjct: 406 KLPNTITYSSVIDGLCKE 423
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 36/158 (22%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E D+F + +GT +V + L+ L D A+K F
Sbjct: 321 LPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDE--------------- 365
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI-ERGVTQNVVTLIQLLQRLEMG 171
+ G+ P+V TY++++DG CK GR+ A+ELL+ + ER
Sbjct: 366 -MARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKER------------------- 405
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+P TIT+++VI LC G + +A+ +L M G+ P
Sbjct: 406 KLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKP 443
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A E+L ++ G KPD + ++ G C GR+ EA L+E G+ N +T
Sbjct: 424 GCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTW 483
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
L R+ + V+ ALC G++ +A + M G T+ +L++ L
Sbjct: 484 -SLHGRIN----------DAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECL 532
Query: 222 DQQ 224
++
Sbjct: 533 SKK 535
>gi|255581311|ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528920|gb|EEF30916.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G ++ A +++ + + L PD+ TY +I+ GFC +GR EA L+ E G NVV
Sbjct: 177 GDMDMAQKLMGEMSFNDLYPDMVTYVSIIKGFCDIGRLEEACRLVKEMRAHGCVPNVVVY 236
Query: 160 -TLIQLLQRL---------------EMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLM 202
TL+ + R E G P +T+ +VIQ LC G+ A +L M
Sbjct: 237 STLVDGICRFGSVERALELLGGMEKEGGDCNPNVLTYTSVIQGLCEKGRTMDAFAVLDRM 296
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P+R + L+K+L
Sbjct: 297 EACGCAPNRVTVSTLLKRL 315
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 102 GRVEEAYEMLMNVKNDG--LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G VE A E+L ++ +G P+V TYT+++ G C+ GR+ +A +L+ G N V
Sbjct: 247 GSVERALELLGGMEKEGGDCNPNVLTYTSVIQGLCEKGRTMDAFAVLDRMEACGCAPNRV 306
Query: 160 TLIQLLQRLEM-GHI 173
T+ LL+RL M GH+
Sbjct: 307 TVSTLLKRLCMDGHL 321
>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
Length = 933
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 39/192 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF------------------ 94
++E + +F G + ++ L+ L + TA KF
Sbjct: 500 IEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNV 559
Query: 95 FSNHL-MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F N L M+G+ +EA L ++N GLKPD TY ++ C+ G + +A++LL+E
Sbjct: 560 FINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHE----- 614
Query: 154 VTQNVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
++M I P IT+N ++ L G G + KA LL M G PS
Sbjct: 615 --------------MKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSL 660
Query: 213 SHDMLIKKLDQQ 224
+H +++ Q
Sbjct: 661 THRRVLQACSQS 672
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR EAY + + G P+ TY ++D K GR E + LL E + RGV ++VT
Sbjct: 288 GRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTY 347
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L + G P +T+ +I ALC + +A +L M E
Sbjct: 348 TALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEE 407
Query: 205 HGKIPSRTSHDMLI 218
P+ + +I
Sbjct: 408 KSISPNVVTFSSVI 421
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+ A +L +K G+ P+V TYT + +C+ EA +L + GV +VVTL
Sbjct: 218 GQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTL 277
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++G P +T+ +I +L G+ + L LL M
Sbjct: 278 SALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVS 337
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G + ++ L+ L +Q
Sbjct: 338 RGVVMDLVTYTALMDWLGKQ 357
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 36/210 (17%)
Query: 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------- 96
V + ++E D++ + ++G V + L+ L A F
Sbjct: 247 VYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAA 306
Query: 97 -NHLM----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
NH+ GR +E +L + + G+ D+ TYTA+MD K G+++E +
Sbjct: 307 PNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDT 366
Query: 146 LNEAIERGVTQNVVTLIQLLQRLEMGH-----------------IPRTITFNNVIQALCG 188
L A+ ++ N VT L+ L H P +TF++VI
Sbjct: 367 LRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVK 426
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G + KA +M E G P+ ++ LI
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLI 456
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR+ EA +L+ ++ GL+P+ TY + G K EAM L E + +G
Sbjct: 777 VGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGF------ 830
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P+ T+N +I G + +A L M + G P+ ++D+L+
Sbjct: 831 ------------VPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILV 876
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 35 NPRSLQAQRFVDKIKASP-LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
+P SL +R + S L +DI + G + ++ +N LL L
Sbjct: 656 SPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCY--------- 706
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
H G +A +L + G+ PD T+ A++ G CK + A + + +
Sbjct: 707 ----H---GMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQN 759
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
++ N+ TFN ++ L VG+I +A +L M + G P+ +
Sbjct: 760 ISPNIA------------------TFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLT 801
Query: 214 HDMLIKKLDQQ 224
+D+L +Q
Sbjct: 802 YDILATGHGKQ 812
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 52/169 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV------------------------- 136
G +++A E +K G+ P+V TY ++DGF K
Sbjct: 428 GLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIV 487
Query: 137 ----------GRSNEAMELLNEAIERGVT---QNVVTLIQLL--------------QRLE 169
G+ EAM L +A G++ N TLI L + ++
Sbjct: 488 DSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P + +N I LC +GK +A L M G P +++++ +I
Sbjct: 548 RNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMI 596
>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 861
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 34/208 (16%)
Query: 32 LKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90
+K NP Q ++ + K E +FN +K G F D +M T
Sbjct: 265 MKCNPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGY------FPDRVM-------YTT 311
Query: 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
+K F + +G + EA ++ + GL P+ YTY ++ G+CKV EA +L ++
Sbjct: 312 VIKGFCD---MGLLAEARKLWFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMC 368
Query: 151 ERGVTQNVVTL----------------IQLLQRLEMGHIPRT-ITFNNVIQALCGVGKIH 193
RG +NVV+ + L + I R I++N++I+ LC G++
Sbjct: 369 GRGYAENVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELA 428
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KA LL + G PS +S LIK L
Sbjct: 429 KATNLLNKLLIQGLEPSVSSFTPLIKCL 456
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 38/204 (18%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------- 102
++E D+F S+KK G S S FN L+A + + D K + + G
Sbjct: 145 VEEVFDVFVSLKKVGFLPSASSFNVCLLACLKVGRTDLVWKLYELMIESGVGVNIDVETV 204
Query: 103 -----------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+V YE+L V GL D + A+++GFCK + + E+L+ I
Sbjct: 205 GCLIKAFCAENKVFNGYELLRQVLEKGLCVDNTVFNALINGFCKQKQYDRVSEILHIMIA 264
Query: 152 RGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHK 194
++ T +++ L + G+ P + + VI+ C +G + +
Sbjct: 265 MKCNPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAE 324
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A L F M + G +P+ +++++I
Sbjct: 325 ARKLWFEMIQKGLVPNEYTYNVMI 348
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G VEE +++ +++K G P ++ + KVGR++ +L IE GV N+
Sbjct: 143 GMVEEVFDVFVSLKKVGFLPSASSFNVCLLACLKVGRTDLVWKLYELMIESGVGVNI--- 199
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T +I+A C K+ LL + E G T + LI
Sbjct: 200 -------------DVETVGCLIKAFCAENKVFNGYELLRQVLEKGLCVDNTVFNALINGF 246
Query: 222 DQQ 224
+Q
Sbjct: 247 CKQ 249
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G + +A +L + GL+P V ++T ++ CKVG + AM LL + +R + T
Sbjct: 425 GELAKATNLLNKLLIQGLEPSVSSFTPLIKCLCKVGDTEGAMRLLKDMHDRHLEPIASTH 484
Query: 161 ----------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ LL+ L P TF ++I L ++ L++L LM+
Sbjct: 485 DYMIIGLSKKGDFAQGMEWLLKMLSWKLKPNMQTFEHLIDCLKRENRLDDILIVLDLMFR 544
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G ++ L+ K ++
Sbjct: 545 EGYRLEKSRICSLVTKFSKK 564
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ M R+ EA ML + + PD+ T+T+++ G+CKV R +E M+L + +RG+
Sbjct: 319 GYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVA 378
Query: 157 NVVTLIQLLQ------RLE-----------MGHIPRTITFNNVIQALCGVGKIHKAL 196
N VT L+Q +LE +G +P +T+ ++ LC GK+ KAL
Sbjct: 379 NTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKAL 435
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 107/250 (42%), Gaps = 44/250 (17%)
Query: 16 LVDSPSRSPSAAESLDL--KENPRSLQAQRF-----VDKI-KASPLKERIDIFNSIKKDG 67
+V+ +S + +LDL K + R+++A F +D + + + I +F ++ G
Sbjct: 176 IVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 235
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------------HLMVGRVEEAY 108
S+ +N L+ L + + V+ + + G+++EA
Sbjct: 236 IKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEAN 295
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + G+ P+ TY ++MDG+C R +EA +L+ + + ++VT L++
Sbjct: 296 ELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGY 355
Query: 169 -----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ G + T+T++ ++Q C GK+ A L M G +P
Sbjct: 356 CKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDV 415
Query: 212 TSHDMLIKKL 221
++ +L+ L
Sbjct: 416 MTYGILLDGL 425
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
+V EA ++ + +G +P+V TY +I++G CK G ++ A++LL + ER V +V T
Sbjct: 150 KVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYS 209
Query: 162 ---------------IQLLQRLEMGHIPRT-ITFNNVIQALCGVGKIHKALLLLFLMYEH 205
I L + +E I + +T+N+++ LC GK + + LL M
Sbjct: 210 TIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSR 269
Query: 206 GKIPSRTSHDMLI 218
IP+ + ++LI
Sbjct: 270 KIIPNVITFNVLI 282
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++E A E+ + + G+ PDV TY ++DG C G+ +A+E+ + + + ++V
Sbjct: 394 GKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMY 453
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++ + G P +T+ +I LC G + +A +LL M E
Sbjct: 454 TIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 513
Query: 205 HGKIPSRTSHDMLIK 219
G P+ +++ LI+
Sbjct: 514 DGNEPNDCTYNTLIR 528
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----- 161
AY +L V G +PD T+ +++G C + +EA+ L+ +E G NVVT
Sbjct: 119 AYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVN 178
Query: 162 -----------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ LL++++ ++ + T++ +I +LC G I A+ L M G
Sbjct: 179 GICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 238
Query: 210 SRTSHDMLIKKL 221
S +++ L+ L
Sbjct: 239 SLVTYNSLVGGL 250
>gi|238478946|ref|NP_001154441.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|49660083|gb|AAT68332.1| hypothetical protein At1g63630 [Arabidopsis thaliana]
gi|50058961|gb|AAT69225.1| hypothetical protein At1g63630 [Arabidopsis thaliana]
gi|332196000|gb|AEE34121.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 152
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV++A ML ++ + G PDV T++ +++G+CK R + ME+ E RG+ N VT
Sbjct: 25 RVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYT 84
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P ITF+ ++ LC ++ KA +L
Sbjct: 85 TLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAIL 138
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR------------- 167
P TY +++DGFCK R ++A +L+ +G + +VVT L+
Sbjct: 8 PTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEI 67
Query: 168 -LEM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR-TSHDML 217
EM G + T+T+ +I C VG + A LL M G P T H ML
Sbjct: 68 FCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCML 122
>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Glycine max]
Length = 875
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR+EEA + + + L+PD TY + FCK G+ + A +L + G ++ + T
Sbjct: 538 VGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQT 597
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E G P T+NN+I LC GK A+ LL M
Sbjct: 598 YNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEML 657
Query: 204 EHGKIPSRTSHDMLIKKLDQ 223
+ G P+ +S +LIK +
Sbjct: 658 DKGISPNVSSFKILIKAFSK 677
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-----Q 156
GR EA EML + +PD T +++G C+ G ++A E+++E G T
Sbjct: 447 GRTLEAEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGN 506
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
+ +LI + + +P IT+ +I LC VG++ +A M P ++D
Sbjct: 507 SFASLINSIHNVS-NCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDT 565
Query: 217 LIKKLDQQ 224
I +Q
Sbjct: 566 FIWSFCKQ 573
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------- 168
+G+ PD Y+ ++ G+C G+ EA +L+E I G N T LL L
Sbjct: 392 NGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLE 451
Query: 169 ---------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
E + P T+T N V+ LC G++ KA ++ M+ +G
Sbjct: 452 AEEMLQKMNEKCYQPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNG 498
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--TLI 162
+ A ++ + G P+ +T ++ G C+ G +A+EL+N + VV TL+
Sbjct: 167 DHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVKQALELVNNNNSCRIANRVVYNTLV 226
Query: 163 -------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKA 195
+L++R+ E+G +P +TFN+ I ALC GK+ +A
Sbjct: 227 SRFCREEMNNEAERLVERMNELGVLPDVVTFNSRISALCRAGKVMEA 273
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P S+ F+ K + + ++++G + ++ +N L++ L N+
Sbjct: 558 PDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQ------- 610
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ E Y + +K G+ PD+ TY I+ C+ G++ +A+ LL+E +++G+
Sbjct: 611 ---------IFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGI 661
Query: 155 TQNVVTLIQLLQ 166
+ NV + L++
Sbjct: 662 SPNVSSFKILIK 673
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA +L + G++P+ YTY +MDG C+ ++A L++ + GV
Sbjct: 342 GELLEARLVLDEMVAKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGV------- 394
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+ ++ ++ C GK+ +A +L M +G P+ + + L+ L
Sbjct: 395 -----------YPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSL 443
Query: 222 DQQ 224
++
Sbjct: 444 WKE 446
>gi|302797282|ref|XP_002980402.1| hypothetical protein SELMODRAFT_32257 [Selaginella moellendorffii]
gi|300152018|gb|EFJ18662.1| hypothetical protein SELMODRAFT_32257 [Selaginella moellendorffii]
Length = 457
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 39/192 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD-TAVKFFS--------------- 96
+KE D+F I G S ++ ++ L D A++ F
Sbjct: 118 VKEAFDLFQEIHARGFTAKASSYSYIVCGLAKYGYFDEAAIQLFRKMEGEYGCPPNTYAY 177
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L+ G VEE EM + +K G +P++ TY + G CK GR ++AM + E I+
Sbjct: 178 NVLLTGLKKKDGVEEMREMFLEMKEKGCEPNLVTYCTYILGLCKAGRVDDAMVVKKEMIQ 237
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ + P + ++ +I A C VGKI++ LL M E P
Sbjct: 238 KSCS------------------PDNVVYSILINAFCKVGKIYEGEKLLAEMLEKKLQPDV 279
Query: 212 TSHDMLIKKLDQ 223
L+ LD+
Sbjct: 280 VCFSSLVDCLDK 291
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 20/140 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-------GV 154
GR +AY + + G KPD + ++D F K G +A+EL++E ++R G
Sbjct: 293 GRYGDAYRLFRRMMEQGCKPDAVIASVMLDSFTKRGEVAQALELVDEFVDRDLPLPSAGS 352
Query: 155 TQNVVTLIQLLQRLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLL-LFL- 201
+V I + ++E G P ++ +++ LC +AL L LF
Sbjct: 353 INQLVKRIVVGDKVEDGVRLLKTMASRGSRPLQCSYATLLRELCRRKNAVEALELDLFQE 412
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M E G+IP S+++L++ L
Sbjct: 413 MIESGRIPDVNSYEILVEAL 432
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG++ E ++L + L+PDV +++++D K GR +A L +E+G + V
Sbjct: 257 VGKIYEGEKLLAEMLEKKLQPDVVCFSSLVDCLDKAGRYGDAYRLFRRMMEQGCKPDAVI 316
Query: 161 ----LIQLLQRLEMGH--------------IPRTITFNNVIQALCGVGKIHKALLLLFLM 202
L +R E+ +P + N +++ + K+ + LL M
Sbjct: 317 ASVMLDSFTKRGEVAQALELVDEFVDRDLPLPSAGSINQLVKRIVVGDKVEDGVRLLKTM 376
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P + S+ L+++L
Sbjct: 377 ASRGSRPLQCSYATLLREL 395
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 35/193 (18%)
Query: 33 KENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA 91
K NP + +D + K + +++ + ++ G + +N LL AL
Sbjct: 282 KINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALC-------- 333
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
NH +++A ++ +K+ G++P+V TYT ++DG CK GR +A + E +
Sbjct: 334 ----KNH----HLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILT 385
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
G HI T+N +I LC G +AL LL M ++ IP
Sbjct: 386 EGY-----------------HI-TVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDA 427
Query: 212 TSHDMLIKKLDQQ 224
S++ +I L ++
Sbjct: 428 VSYETIIYALSEK 440
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--- 161
++A +L + G+KP+V TY AIMDG+C V + N+A+ + N ++ GV NV
Sbjct: 199 KQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNII 258
Query: 162 -------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ L + + I P +T+N +I LC +GKI +L L+ M GK
Sbjct: 259 INGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGK 318
Query: 208 IPSRTSHDMLIKKL 221
+++ L+ L
Sbjct: 319 TVDIITYNSLLHAL 332
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 36/207 (17%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----------- 102
K+ +++ + K G +V + ++ ++N+ + A+ F+ + G
Sbjct: 199 KQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNII 258
Query: 103 --------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
RV+EA + + + PDV TY ++DG CK+G+ + ++EL++E G
Sbjct: 259 INGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGK 318
Query: 155 TQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALL 197
T +++T LL L + G P T+ +I LC G++ A +
Sbjct: 319 TVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYV 378
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ + G + +++++I L ++
Sbjct: 379 IFQEILTEGYHITVWTYNVMINGLCKK 405
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +AY + + G+ P+VYT++ ++D CK + +AM LL +++GV NVV
Sbjct: 163 VTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVV---- 218
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
T+ ++ C V +++KAL + +M + G P+ ++++I L +
Sbjct: 219 --------------TYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCK 264
Query: 224 Q 224
+
Sbjct: 265 K 265
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 36/148 (24%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
FN +L +LV +N TA+ F ++ +G+KP + T T +M+ +C
Sbjct: 13 FNHILASLVKINHYPTAISLFRQ----------------LEFNGIKPSIVTLTILMNCYC 56
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR-LEMGHIPRTITFNNVIQALCGVGKIH 193
G G+T L +L + L+MG+ P +ITF +I+ +C G+ +
Sbjct: 57 HTG---------------GIT----FLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAY 97
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ALL + HG + S+ +L+ L
Sbjct: 98 EALLFHDHVVAHGFKLDQVSYAILMNGL 125
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 106 EAYEMLM---NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+AYE L+ +V G K D +Y +M+G CK+G + AM++L + T+I
Sbjct: 95 QAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQMLRKTWVNADVVMYSTII 154
Query: 163 QLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
L + + G P TF+ ++ ALC K +A+ LL +M + G
Sbjct: 155 DSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVK 214
Query: 209 PSRTSH 214
P+ ++
Sbjct: 215 PNVVTY 220
>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+ A +++ +K++G P+V+ Y+A+M GFCK GR EAM+ E G+ Q+ V
Sbjct: 276 GKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGY 335
Query: 162 IQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ G I +T N +++ CG G+ +AL +L +
Sbjct: 336 TILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSS 395
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G ++ S+ +++ L Q+
Sbjct: 396 EGIYLNKASYRIVLNSLCQK 415
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLK-PDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
F H G +E A+ ++ +K + P++ TY+ +MDG C+ GR EA+EL E + +
Sbjct: 196 FIKYHCKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSK 255
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
Q+L P +T+N +I GK+ +A ++ M +G P+
Sbjct: 256 D---------QIL--------PDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVF 298
Query: 213 SHDMLI 218
++ L+
Sbjct: 299 NYSALM 304
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR EEA ML + ++G+ + +Y +++ C+ G ++A+ELL + RG
Sbjct: 381 GRTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQKGDLDKALELLGLTLSRGF------- 433
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+P T N ++ LC G A++ L+ + E G P + S +L++
Sbjct: 434 -----------VPHHATSNELLVGLCKAGMADDAVVALYGLAEMGFKPEQDSWALLVE 480
>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
Length = 440
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 25/171 (14%)
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDG--LKPDVYTYT 127
N + + L + E A FS ++++ R +EA E+L + +DG PDV +Y+
Sbjct: 151 NAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYS 210
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRL-EM 170
I+DG K G S++A +E +ERG+ +VVT + +L R+ +
Sbjct: 211 TIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKN 270
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G +P IT+N+++ C G+ +A+ +L M G P ++ L+ L
Sbjct: 271 GVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYL 321
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA + + +D+ N + K+G +N ++ + G+ +EA
Sbjct: 252 CKAQAMDKAMDVLNRMVKNGVMPDCITYNSIV----------------HGYCSSGQSKEA 295
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
+L + +DG++PD TYT++MD CK GR EA ++L+ I+RG+ NV+T LL
Sbjct: 296 IGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLH 354
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A ++L + +G+ PD TY +I+ G+C G+S EA+ +L + GV + VT
Sbjct: 257 MDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTS 316
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L + G P IT++ ++ G + + LL LM +G
Sbjct: 317 LMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNG 376
Query: 207 KIPSRTSHDMLI 218
P R +LI
Sbjct: 377 IQPDRHVFSILI 388
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 21/131 (16%)
Query: 112 MNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-- 168
M +DG + P ++TY ++ C+ GR + L I++G + LL+ L
Sbjct: 86 MARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCA 145
Query: 169 ----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK--IPS 210
E+G P ++N +++ LC + +AL LL +M + G P
Sbjct: 146 EKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPD 205
Query: 211 RTSHDMLIKKL 221
S+ +I L
Sbjct: 206 VVSYSTIIDGL 216
>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 536
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 18/136 (13%)
Query: 104 VEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ +A EM +VK+ + PDV TYT+++ G+CK G+ EA LL++ + G+ VT
Sbjct: 257 LNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFN 316
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + + G P +TF ++I C VG++ + L M
Sbjct: 317 VLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNAR 376
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ ++ +LI L
Sbjct: 377 GMFPNAFTYSILINAL 392
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 36/162 (22%)
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLM-------------------VGRVEEAYEMLMNVKN 116
N LL LV L+ + A+K F HL VG+ E+A E+L +
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSG 234
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G +PD+ TY ++ GFCK N+A E+ + V P
Sbjct: 235 FGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCS-----------------PDV 277
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+T+ ++I C GK+ +A LL M G P+ + ++L+
Sbjct: 278 VTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLV 319
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A E+ + + G PDV T+T+++DG+C+VG+ ++ L E RG+ N T
Sbjct: 326 GEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTY 385
Query: 162 IQLLQRLE-----------MGH------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L +G IP+ +N VI C GK+++A +++ M +
Sbjct: 386 SILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEK 445
Query: 205 HGKIPSRTSHDMLI 218
P + + +LI
Sbjct: 446 KKCKPDKITFTILI 459
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE-RGVTQNVVTLIQLL 165
A +M +K+DG+ P+ ++ F + G+ + A LL ++ E G V +L+ L
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTL 181
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ L T TFN +I+ LCGVGK KAL LL +M G P
Sbjct: 182 VKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDI 241
Query: 212 TSHDMLIK 219
+++ LI+
Sbjct: 242 VTYNTLIQ 249
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA ++ ++ KPD T+T ++ G C GR EA+ + ++ + G + + +T+
Sbjct: 431 GKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITV 490
Query: 162 IQLLQRL----------EMGHIPRTITFNNVI 183
LL L + I R NNV+
Sbjct: 491 SSLLSCLLKAGMAKEAYHLNQIARKGQSNNVV 522
>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
Length = 1003
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +++ + +F+ ++ G +V +N L+ + + G ++ A
Sbjct: 385 KRGMIEDALCLFDKMRDKGIKVTVYPYNSLI----------------NGYCKQGSLDRAR 428
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
+L + +GL P +Y+ ++ G C+ G + MEL E ERG+ N T L+
Sbjct: 429 GLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGF 488
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ ++ IP +TFN +I+ C VG I KA L M E G P
Sbjct: 489 CKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDN 548
Query: 212 TSHDMLIKKL 221
++ LI L
Sbjct: 549 YTYRSLISGL 558
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
VEEA+ + + + G+ P+V+ Y A++D CK R ++A L E RG+ N VT
Sbjct: 319 VEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 378
Query: 164 LLQRL-EMGHIPRTIT----------------FNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L + G I + +N++I C G + +A LL M + G
Sbjct: 379 LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG 438
Query: 207 KIPSRTSHDMLIKKL 221
P+ S+ LI L
Sbjct: 439 LTPTAASYSPLIAGL 453
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+++EA +++ + G PD +Y+ I+ CK+G N+A EL NE + +G+ +VV
Sbjct: 771 GKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVA 829
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE------- 169
DG P+ T+T +++ CK G A L E + V N T L
Sbjct: 682 DGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEK 741
Query: 170 ---------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
GH+ ++FN +I+ LC GKI +A+ L+ + E G P S+ +I +
Sbjct: 742 AKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHE 801
Query: 221 L 221
L
Sbjct: 802 L 802
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N LM G RV+EA E+ + N G+ D TY ++ GFC++ A+ + ++ I
Sbjct: 237 NVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIR 296
Query: 152 RGVT---QNVVTLIQLLQRLE--------------MGHIPRTITFNNVIQALCGVGKIHK 194
G N +I L++ E +G +P +N +I LC +
Sbjct: 297 LGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDD 356
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A L M G P+ ++ +LI L ++
Sbjct: 357 ADRLFKEMAGRGLEPNEVTYAILIHALCKR 386
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++ A +++ ++++G+K Y +M G CK R EA+E+ N + GVT +
Sbjct: 214 LDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTAD------ 267
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+T+ ++ C + ++ AL + M G +PS + +I +L +
Sbjct: 268 ------------EVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRK 315
Query: 224 Q 224
+
Sbjct: 316 K 316
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 81/240 (33%), Gaps = 71/240 (29%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF----------------- 95
L +++ + + G W+ F L+ + D A + F
Sbjct: 459 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518
Query: 96 --SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY--------------------------- 126
+ +VG + +A+++ + GLKPD YTY
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578
Query: 127 --------TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------- 161
TA++ GF + GR E L +E RGV ++V+
Sbjct: 579 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 638
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + E G P I + +I AL + +AL M G P+ +H +LI L
Sbjct: 639 VLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNL 698
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA ++E ID+ + I + G + ++ ++ L + G + +A+
Sbjct: 769 KAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKM----------------GDINKAF 812
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKV-GRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
E+ + GLKPDV Y I +C V G S++A+ + I GV N T LL
Sbjct: 813 ELWNEMLYKGLKPDVVAYN-IFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871
Query: 168 LEM 170
+ +
Sbjct: 872 ISL 874
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 19/137 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++EEA M ++ G+ P+VYTY +MDG+CK+ + +A+ L + + G+ +VVT
Sbjct: 232 KIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFG 291
Query: 163 QLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L + G + P +N++I A C VG + +A + LFL E
Sbjct: 292 ILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEA-MALFLELER 350
Query: 206 GKI-PSRTSHDMLIKKL 221
++ P ++ +LI+ L
Sbjct: 351 FEVSPDVFTYSILIRGL 367
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 37/189 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
K + K+ + ++ + +G V F L+ L E A F N
Sbjct: 264 KLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIA 323
Query: 98 --------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ VG V EA + + ++ + PDV+TY+ ++ G C V R+ EA + +
Sbjct: 324 VYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKM 383
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ G+ N ++T+N++I C GK+ KAL + M E+G P
Sbjct: 384 TKEGILAN------------------SVTYNSLIDGCCKEGKMDKALEICSQMTENGVEP 425
Query: 210 SRTSHDMLI 218
+ + LI
Sbjct: 426 NVITFSTLI 434
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 28/208 (13%)
Query: 39 LQAQR--FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
++A R FV+ IK S + I ++NS+ V D ++ + + L + + F+
Sbjct: 303 MKAARNLFVNMIKFS-VTPNIAVYNSLID--AYCKVGDVSEAMALFLELERFEVSPDVFT 359
Query: 97 NHLM------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
++ V R EEA + + +G+ + TY +++DG CK G+ ++A+E+ ++
Sbjct: 360 YSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMT 419
Query: 151 ERGVTQNVVTLIQLLQ--------RLEMGHI---------PRTITFNNVIQALCGVGKIH 193
E GV NV+T L+ + MG P +T+ +I C G +
Sbjct: 420 ENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMK 479
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+AL L M ++G P+ + L+ L
Sbjct: 480 EALKLYSDMLDNGITPNCYTISCLLDGL 507
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 48/206 (23%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + + ++I + + ++G +V F+ L+ + A+ +S
Sbjct: 404 KEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYS------------ 451
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165
EM++ L PDV TYTA++DG CK G EA++L ++ ++ G+T N T+ LL
Sbjct: 452 EMVIK----SLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGL 507
Query: 166 --------------QRLEMGHIPRT--------------ITFNNVIQALCGVGKIHKALL 197
+++E PR + + +I LC G+ KA+
Sbjct: 508 CKDGKISDALELFTEKIEF-QTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVK 566
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKLDQ 223
L M +G P + ++++ L Q
Sbjct: 567 LFSDMRRYGLQPDEVIYVVMLRGLFQ 592
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR E + + + ++GL P V T+ ++DG C+ G A E+ +E +G+ V+
Sbjct: 161 GRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVY 220
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ L E+G P T+N ++ C + +AL L M
Sbjct: 221 TILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLG 280
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P + +LI L
Sbjct: 281 EGLVPDVVTFGILIDGL 297
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE--AYEM 110
++ + +FN ++ G N + F L+ A + + + + + G + + AY
Sbjct: 271 MENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNA 330
Query: 111 LMN-----------------VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L+N +KN GLKPD TYT ++DG CK G+ + AM++ + E+
Sbjct: 331 LVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKE 390
Query: 154 VTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
V+ + VT L+ + +E P T+ VI A C G +
Sbjct: 391 VSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGF 450
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
LL M GK P ++++++ L
Sbjct: 451 KLLKEMQNKGKKPGVVTYNVIMNGL 475
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 35/179 (19%)
Query: 75 FNDLLMALVMLNEQDTAVKFFS-------------NHLMVG----RVEEAYEMLMNVKND 117
FN L+ V L E +A K F N L+ G R +A + L +D
Sbjct: 189 FNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSD 248
Query: 118 -GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLI----------- 162
G+KPDVYTY A++ GFC+ GR A+++ NE + GV N V TLI
Sbjct: 249 VGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNA 308
Query: 163 --QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L Q + + G +P + +N ++ LC + A ++ M G P + ++ LI
Sbjct: 309 GMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLI 367
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+E A +M +++ G+ P+ +T ++D CK G N M+L + RGV ++V
Sbjct: 268 TGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVA 327
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
L+ L EM G P +T+ +I C GK+ A+
Sbjct: 328 YNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAM 380
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 21/123 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ +++L ++N G KP V TY IM+G CK+G+ A LL+ + GV+
Sbjct: 444 GDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVS------ 497
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P IT+N ++ C GK+ + L G +P + LI +L
Sbjct: 498 ------------PDDITYNILLDGQCKHGKVANS---EELESSKGMVPDFAVYTSLISEL 542
Query: 222 DQQ 224
++
Sbjct: 543 AKK 545
>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
RS +R + + + + +F + + S+ DF+ LL+A+ LN+ + + F
Sbjct: 44 RSDYRERLRSGLHSIKFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFR 103
Query: 97 NHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
+ M+G R+ A L + G +P + T+ ++++GFC V
Sbjct: 104 HLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVN 163
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
R EAM L+++ + +G+ P + +N +I +LC G+++ AL
Sbjct: 164 RFYEAMSLVDQIV------------------GLGYEPNVVIYNTIIDSLCEKGQVNTALD 205
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
+L M + G P +++ LI +L
Sbjct: 206 VLKHMKKMGIRPDVVTYNSLITRL 229
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 37/192 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK---------FFSN-- 97
K L E +N + + N ++ +N L+ L + D A K FF N
Sbjct: 266 KEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAV 325
Query: 98 --------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ RV++ ++L + DG+ D +TY + G+C+ G+ + A ++L
Sbjct: 326 TYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRM 385
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ GV P TFN ++ LC GKI KAL+ L + + +
Sbjct: 386 VSCGVH------------------PDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVV 427
Query: 210 SRTSHDMLIKKL 221
+++++IK L
Sbjct: 428 GIITYNIIIKGL 439
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 33/167 (19%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+D+ +KK G V +N L+ L + + S+ + +
Sbjct: 204 LDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRM--------------- 248
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM------ 170
G+ PDV T++A++D + K G+ EA + NE I+R V N+VT L+ L +
Sbjct: 249 -GISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDE 307
Query: 171 -----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
G P +T+N +I C ++ + +L +M G
Sbjct: 308 AKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDG 354
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V R EA ++ + G +P+V Y I+D C+ G+ N A+++L + G+ +VVT
Sbjct: 162 VNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVT 221
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
L+ RL MG P ITF+ +I G++ +A
Sbjct: 222 YNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEA 273
>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 447
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A + M +K G++P+ YTYTA++DG CK GR A +L + +G +V
Sbjct: 326 LDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVR---- 381
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+N +I LC G KAL + M ++G IP+ + D++I+ L
Sbjct: 382 --------------TYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSL 425
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +AY+ + G+ P+V TY+ ++ GFC G+ A LLNE I + + NV T
Sbjct: 221 VNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNI 280
Query: 164 LLQRL--------------EMGHIPR---TITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L EM H + +T+N+V+ LC + KA L M + G
Sbjct: 281 LIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWG 340
Query: 207 KIPSRTSHDMLIKKL 221
P++ ++ LI L
Sbjct: 341 IQPNKYTYTALIDGL 355
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G A ++L +++ +PDV Y+ I+DG CK N+A + +E RG+ NV+T
Sbjct: 183 IGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVIT 242
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LL + + +I P T+N +I ALC GK+ +A LL M+
Sbjct: 243 YSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMH 302
Query: 204 EHGK 207
G+
Sbjct: 303 HKGQ 306
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ + V G + + +Y +++G CK+G + A++LL +R +VV
Sbjct: 149 GEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMY 208
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM G P IT++ +I C G++ A LL M
Sbjct: 209 STIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMIL 268
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P+ ++++LI L ++
Sbjct: 269 KNINPNVYTYNILIDALCKE 288
>gi|302815817|ref|XP_002989589.1| hypothetical protein SELMODRAFT_21981 [Selaginella moellendorffii]
gi|300142767|gb|EFJ09465.1| hypothetical protein SELMODRAFT_21981 [Selaginella moellendorffii]
Length = 368
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Query: 102 GRVEEAYEMLMNVKN-----------DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
G+VE A ++L ++ N DG KPDV Y+ ++D C +G ++E ++
Sbjct: 187 GKVEAACQLLEDLTNGSRGSEQLLGGDGCKPDVVMYSIVIDALCAMGMTDEGFVVVKAME 246
Query: 151 ERGVTQNVVTL----------------IQLLQ-RLEMGHIPRTITFNNVIQALCGVGKIH 193
ERGV + V +LL+ +E G P I++N ++ ALC G+
Sbjct: 247 ERGVKPDAVVYTIFLYAFCRSARLDDACRLLEIMVEAGCYPDVISYNTLLFALCSAGQEE 306
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A L +M E G P+ ++ LI+ L
Sbjct: 307 EACRLFQVMVETGIEPNVFTYTQLIRAL 334
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G VE+A ++L ++ KPD + YT +++GFCK+G A+ LL
Sbjct: 46 LGMVEQAEKVLKTMEESDCKPDKFIYTRVINGFCKLGNFKNAVVLLG------------- 92
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+ E G+ P + F+ +I LC K +AL++L + E G P ++
Sbjct: 93 -----RMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTY 141
>gi|255661022|gb|ACU25680.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 376
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 33/188 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + L + + + N + K G +N L+ LV A KF E+A+
Sbjct: 141 KEAKLDKAVSVLNGMIKSGCKPKAHVYNALINGLV------GASKF----------EDAF 184
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ + P + TY +++G CK R EA +L+ E +E+G +V+T L++ L
Sbjct: 185 RVFHEMGTTHCSPTIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWNSSVITYSLLIKGL 244
Query: 169 EMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+GH P N +I LC VGK+ AL L F + P+
Sbjct: 245 CLGHKVEMALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDINHWNCAPNL 304
Query: 212 TSHDMLIK 219
+H+ L++
Sbjct: 305 VTHNTLME 312
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 37/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA- 107
+ +K+ +++ + ++G+ +V+ FN ++ L E D + + G VE++
Sbjct: 37 RVGRIKDCFELWELMGREGSR-NVASFNIMMRGLFDNGEVDEVISIWELMKNSGFVEDSI 95
Query: 108 -YEMLMN--VKND---------------GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
Y +L++ KN+ G D + Y+A+++G CK + ++A+ +LN
Sbjct: 96 TYGILVHGFCKNEYINKSLHVLEMAERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGM 155
Query: 150 IERGVTQNVVTLIQLLQRL--------------EMG--HI-PRTITFNNVIQALCGVGKI 192
I+ G L+ L EMG H P +T+N +I LC +
Sbjct: 156 IKSGCKPKAHVYNALINGLVGASKFEDAFRVFHEMGTTHCSPTIVTYNTLINGLCKGERF 215
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A L+ M E G S ++ +LIK L
Sbjct: 216 GEAYDLVKEMLEKGWNSSVITYSLLIKGL 244
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 72/190 (37%), Gaps = 47/190 (24%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K E D+ + + G N SV ++ L+ L + H +VE A
Sbjct: 211 KGERFGEAYDLVKEMLEKGWNSSVITYSLLIKGLCL------------GH----KVEMAL 254
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-------- 160
++ V + G KPDV + ++ G C VG+ A+ L + N+VT
Sbjct: 255 QLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDINHWNCAPNLVTHNTLMEGF 314
Query: 161 ---------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
L+ + L G P I++N ++ LC +I ++L L
Sbjct: 315 YKDGDIRNALVIWARILRNGLQPDIISYNITLKGLCSCNRISDSILFL------------ 362
Query: 212 TSHDMLIKKL 221
HD L KK+
Sbjct: 363 --HDALTKKI 370
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + + + PD Y +++GF +VGR + EL E + R ++NV +
Sbjct: 4 GDIDGAERVYKEIVESKVSPDAVVYNTMLNGFFRVGRIKDCFELW-ELMGREGSRNVASF 62
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++ L G + +IT+ ++ C I+K+L +L +
Sbjct: 63 NIMMRGLFDNGEVDEVISIWELMKNSGFVEDSITYGILVHGFCKNEYINKSLHVLEMAER 122
Query: 205 HGKIPSRTSHDMLIKKLDQQP 225
G + ++ +I L ++
Sbjct: 123 KGGVLDAFAYSAMINGLCKEA 143
>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 933
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 39/192 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF------------------ 94
++E + +F G + ++ L+ L + TA KF
Sbjct: 500 IEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNV 559
Query: 95 FSNHL-MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F N L M+G+ +EA L ++N GLKPD TY ++ C+ G + +A++LL+E
Sbjct: 560 FINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHE----- 614
Query: 154 VTQNVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
++M I P IT+N ++ L G G + KA LL M G PS
Sbjct: 615 --------------MKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSL 660
Query: 213 SHDMLIKKLDQQ 224
+H +++ Q
Sbjct: 661 THRRVLQACSQS 672
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR EAY + + G P+ TY ++D K GR E + LL E + RGV ++VT
Sbjct: 288 GRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTY 347
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L + G P +T+ +I ALC + +A +L M E
Sbjct: 348 TALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEE 407
Query: 205 HGKIPSRTSHDMLI 218
P+ + +I
Sbjct: 408 KSISPNVVTFSSVI 421
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+ A +L +K G+ P+V TYT + +C+ EA +L + GV +VVTL
Sbjct: 218 GQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTL 277
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++G P +T+ +I +L G+ + L LL M
Sbjct: 278 SALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVS 337
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G + ++ L+ L +Q
Sbjct: 338 RGVVMDLVTYTALMDWLGKQ 357
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 37/175 (21%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------NHLMV----------GR 103
+K+ G N +V + L+ QD A++ + N +V G+
Sbjct: 440 MKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGK 499
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+EEA + + GL D YT ++DG K G A + E ++R +
Sbjct: 500 IEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNM--------- 550
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P + +N I LC +GK +A L M G P +++++ +I
Sbjct: 551 ---------LPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMI 596
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 36/210 (17%)
Query: 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------- 96
V + ++E D++ + ++G V + L+ L A F
Sbjct: 247 VYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAA 306
Query: 97 -NHLM----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
NH+ GR +E +L + + G+ D+ TYTA+MD K G+++E +
Sbjct: 307 PNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDT 366
Query: 146 LNEAIERGVTQNVVTLIQLLQRLEMGH-----------------IPRTITFNNVIQALCG 188
L A+ ++ N VT L+ L H P +TF++VI
Sbjct: 367 LRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVK 426
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G + KA +M E G P+ ++ LI
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLI 456
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR+ EA +L+ ++ GL+P+ TY + G K EAM L E + +G
Sbjct: 777 VGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGF------ 830
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P+ T+N +I G + +A L M + G P+ ++D+L+
Sbjct: 831 ------------VPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILV 876
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 35 NPRSLQAQRFVDKIKASP-LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
+P SL +R + S L +DI + G + ++ +N LL L
Sbjct: 656 SPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCY--------- 706
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
H G +A +L + G+ PD T+ A++ G CK + A + + +
Sbjct: 707 ----H---GMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQN 759
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
++ N+ TFN ++ L VG+I +A +L M + G P+ +
Sbjct: 760 ISPNIA------------------TFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLT 801
Query: 214 HDMLIKKLDQQ 224
+D+L +Q
Sbjct: 802 YDILATGHGKQ 812
>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Brachypodium distachyon]
Length = 676
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 18/136 (13%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T S H G A+E++ ++ +G +P++YTY A++DG CK G+ EA ++L
Sbjct: 362 NTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRM 421
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
A +G +QL + +T+ +I C G I AL L M E+G
Sbjct: 422 ANNQG--------LQLDK----------VTYTVMITEHCKQGHITYALDLFNRMAENGCH 463
Query: 209 PSRTSHDMLIKKLDQQ 224
P ++ LI + QQ
Sbjct: 464 PDIHTYTTLIARYCQQ 479
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 18/142 (12%)
Query: 101 VGRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV- 158
+G E A+ + + +K+ KP+V+TYT ++ G+CK G+ A LL +E+G+ N
Sbjct: 303 IGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTN 362
Query: 159 --VTLI-------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
TLI +L+ ++ G P T+N +I LC GKI +A +L +
Sbjct: 363 TYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMA 422
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
G + ++ ++I + +Q
Sbjct: 423 NNQGLQLDKVTYTVMITEHCKQ 444
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 33/185 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
++ N ++++G ++ +N L+ L G+++EAY++L N
Sbjct: 381 FELMNKMRREGFQPNIYTYNALIDGLCK----------------KGKIQEAYKVLRMANN 424
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR--------- 167
GL+ D TYT ++ CK G A++L N E G ++ T L+ R
Sbjct: 425 QGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEE 484
Query: 168 --------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
L + +P T+ ++I C VGK AL + M ++G ++ LI
Sbjct: 485 SQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALIS 544
Query: 220 KLDQQ 224
L ++
Sbjct: 545 GLCKE 549
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR + E+ + G P+V YTA +DG CK +A +L E + +G+ NV T
Sbjct: 234 GRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTH 293
Query: 162 IQLLQRL-EMGHIPRTI-----------------TFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L ++G R T+ +I C GK+ +A +LL M
Sbjct: 294 TSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMV 353
Query: 204 EHGKIPSRTSHDMLI 218
E G P+ ++ LI
Sbjct: 354 EQGLAPNTNTYTTLI 368
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EE +L ++ G D T T I+ FC+ GR + EL
Sbjct: 199 GRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDVSELFR-------------- 244
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ LEMG P + + I LC + +A +L M G P+ +H LI L
Sbjct: 245 ----RMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGL 300
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/190 (18%), Positives = 72/190 (37%), Gaps = 37/190 (19%)
Query: 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLL-------------------MALVML 85
+ K + +D+FN + ++G + + + L+ +A+ ++
Sbjct: 439 TEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELV 498
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
+ T + + VG+ A + + +G + D TY A++ G CK R EA L
Sbjct: 499 PTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARAL 558
Query: 146 ----------------LNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189
+ A E + V + +L RL+ T+ N +++ L +
Sbjct: 559 YEGMLDKRLVPCEVTPVTLAFEYCRREKAVVAVSILDRLDKRRKNHTV--NVLVRKLSAI 616
Query: 190 GKIHKALLLL 199
G + A L L
Sbjct: 617 GHVEDASLFL 626
>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
Length = 438
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 34/222 (15%)
Query: 18 DSPSRSPSAAESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFN 76
DS + E LD + +P + + + KA + + +++ N++ K+G +N
Sbjct: 219 DSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 278
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
+L + G+ +EA L +++DG++P+V TY ++M+ CK
Sbjct: 279 SIL----------------HGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKN 322
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQR-------LEM----------GHIPRTITF 179
GR EA ++ + +RG+ ++ T LLQ +EM G P F
Sbjct: 323 GRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVF 382
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
N +I A K+ +A+L+ M +HG P+ + +I L
Sbjct: 383 NILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL 424
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 20/139 (14%)
Query: 103 RVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
R +EA E+L + +D G PDV +YT +++GF K G S++A +E ++R ++ NVV
Sbjct: 181 RSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVV 240
Query: 160 TLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ L + G +P +T+N+++ C G+ +A+ L M
Sbjct: 241 TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 300
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P+ ++ L+ L
Sbjct: 301 RSDGVEPNVVTYRSLMNYL 319
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 20/118 (16%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLN-EAIERGVTQ--NVVTLIQLL------------ 165
PDV++ T ++ G C RS EA+ELL+ A +RG +VV+ ++
Sbjct: 164 PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 223
Query: 166 -----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L+ P +T++++I ALC + KA+ +L M ++G +P +++ ++
Sbjct: 224 YSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 281
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------- 168
D + PD+ TY+ ++ C+ GR + L I++G +T LL+ L
Sbjct: 89 DEVTPDLCTYSILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFAPLLKGLCADKRTSD 148
Query: 169 ----------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE---HGKIPSRTSHD 215
E+ +P + +++ LC + +AL LL +M + G P S+
Sbjct: 149 AMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT 208
Query: 216 MLI 218
+I
Sbjct: 209 TVI 211
>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Glycine max]
Length = 642
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 20/186 (10%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
+ N I ++G +F + ++A LN A+ F +G V++A E+ +
Sbjct: 138 VLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIP 197
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE------ 169
PD YTY+ +M G CK R +EA+ LL+E G N+V L+ L
Sbjct: 198 LRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLG 257
Query: 170 -----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G +P +T+N ++ LC GK+ KA+ LL M + +P+ + LI
Sbjct: 258 RAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLI 317
Query: 219 KKLDQQ 224
Q
Sbjct: 318 NGFVMQ 323
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+M GR + +L++++ G + + Y Y++++ G CK G+ N+AMEL E + +G N
Sbjct: 321 VMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNT 380
Query: 159 VTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
+ L+ L EM G++P + T++++++ G HKA+L+
Sbjct: 381 IVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKE 440
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M + I + + +LI L
Sbjct: 441 MANNNCIHNEVCYSILINGL 460
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E + + + ++ +GT ++ FN L+ AL + A K N + G V
Sbjct: 217 KEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCV---- 272
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
P+ TY A++ G C G+ +A+ LLN+ + N VT L+
Sbjct: 273 ------------PNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGF 320
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
M GH ++++I LC GK ++A+ L M G P+
Sbjct: 321 VMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNT 380
Query: 212 TSHDMLIKKLDQQ 224
+ LI L ++
Sbjct: 381 IVYSALIDGLCRE 393
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVT 160
G+ EA + + + G+K DV Y++++ GFC + ++L N+ + +G V Q
Sbjct: 464 GKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQ---- 519
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P IT+N ++ A C I +A+ +L +M + G P + D+ +K
Sbjct: 520 -------------PDVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKT 566
Query: 221 LDQ 223
L +
Sbjct: 567 LRE 569
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ +A E+ + G P+ Y+A++DG C+ G+ +EA L+E +G N T
Sbjct: 359 GKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTY 418
Query: 162 IQLLQ-RLEMGH----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ E G I + ++ +I LC GK +AL++ M
Sbjct: 419 SSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLS 478
Query: 205 HG 206
G
Sbjct: 479 RG 480
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
+ N + KDG VS ++L +LV T V + + + G +E A+ +K
Sbjct: 342 LLNGLCKDG---KVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMK 398
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--------------- 160
+ +KPD TY A+++G CK R A +LL E + GV V T
Sbjct: 399 SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLE 458
Query: 161 --LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
I L + E G P +++ +++ A C GKI +A+ +L M+ +P+ ++ +I
Sbjct: 459 KCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAII 518
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA + D+ ++ +G N +V FN L+ A + G++E+
Sbjct: 417 CKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA----------------YGRTGQLEKC 460
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------ 161
+ +L ++ +GLKP+V +Y +I++ FCK G+ EA+ +L++ + V N
Sbjct: 461 FIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDA 520
Query: 162 ----------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L+++++ I P +T+N +I+ LC +I +A ++ + H IP
Sbjct: 521 YVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPD 580
Query: 211 RTSHDMLI 218
S++ LI
Sbjct: 581 AVSYNTLI 588
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ G + EA ML + DG P + ++Y ++ G + GR +A+E+ +E ER V N
Sbjct: 171 VAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPN 230
Query: 158 VVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+T ++ Q + G P IT+N ++ LC G++ + LL
Sbjct: 231 HITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLD 290
Query: 201 LMYEHGKIPSRTSHDMLIKKLDQ 223
M +P ++ +L L +
Sbjct: 291 EMASQKMVPDGFTYSILFDGLSR 313
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 25/163 (15%)
Query: 59 IFNSIKKDGT-NWSVSDFNDLLMALVMLNEQ--DTAVKFFSNHLMVGRVEEAYEMLMNVK 115
I N+ K+G +V+ +D+ V+ N Q + + + H G ++A+ ++ +K
Sbjct: 482 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEH---GPNDQAFILVEKMK 538
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175
++G+ P + TY ++ G C + +EA E++N RL IP
Sbjct: 539 SNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSN--------------HRL----IPD 580
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHG-KIPSRTSHDML 217
+++N +I A C G I KAL L M+++G K RT H ++
Sbjct: 581 AVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 623
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 17/144 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER---- 152
H+ G +E + + + GLKP+ TY ++ G C+ GR E LL+E +
Sbjct: 240 GHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVP 299
Query: 153 -GVTQNVV-----------TLIQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
G T +++ ++ L + L+ G T + ++ LC GK+ A +L
Sbjct: 300 DGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVL 359
Query: 200 FLMYEHGKIPSRTSHDMLIKKLDQ 223
+ G +P+R ++ LI Q
Sbjct: 360 QSLVNAGLVPTRVIYNTLINGYCQ 383
>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 21 SRSPSAAESLDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLL 79
S++ S +L+ + P + D +A +D+ + + G + + +N +L
Sbjct: 180 SKAASLVRALERRFPPDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIIL 239
Query: 80 MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG-----LKPDVYTYTAIMDGFC 134
FF G+++ A+ + +K G KPD+ +YT I+ G
Sbjct: 240 KG------------FFR----AGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLG 283
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVT---LIQLLQR--------------LEMGHIPRTI 177
G+ ++A +L +E + G T +V T LIQ++ + + ++P +
Sbjct: 284 VAGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVV 343
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T+ +I+ LC VGKI +A+ L+ M G P ++++LI+
Sbjct: 344 TYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIR 385
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 42/173 (24%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------------------ 100
+F+ + K+G SV+ +N L+ + + AV F + +
Sbjct: 294 LFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLC 353
Query: 101 -VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----- 154
VG+++ A +++ +K +G +P V TY ++ + G +A+ L E + +G
Sbjct: 354 HVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIEKALCLF-ERMSKGEDCLPN 412
Query: 155 --TQNVVTLIQLLQR---------------LEMGHIPRTITFNNVIQALCGVG 190
T N++ +++ +E G++PR N V+ L G
Sbjct: 413 QDTYNIIISAMFVRKRAEDMATAARMVMEMVERGYLPRRFMLNRVLNGLMLTG 465
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V +A E+ ++ G+ PDV++Y ++DGF K+G +A + +E ++ G+T NV+
Sbjct: 609 GKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIY 668
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL EM G P +T+ +I C G + +A L M
Sbjct: 669 NMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKL 728
Query: 205 HGKIPSRTSHDMLI 218
G +P + L+
Sbjct: 729 KGLVPDSFVYTTLV 742
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 26/187 (13%)
Query: 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-NHL 99
A V ++ AS + + I+ ++ K T S F D + L + EQ A F N L
Sbjct: 439 AYNIVKEMGASGCRPNVVIYTTLIK--TFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSL 496
Query: 100 MVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
++G +++EA L+ + +G KPD +TY A + G+ + G A + + E +E GV
Sbjct: 497 IIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGV 556
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
IP + +I C GK+ +A M E G + ++
Sbjct: 557 ------------------IPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTY 598
Query: 215 DMLIKKL 221
+L+ L
Sbjct: 599 TVLMNGL 605
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G+V EA ++ G+ D TYT +M+G K G+ N+A E+ +E +G+ +V
Sbjct: 574 GKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSY 633
Query: 160 -TLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI +L + G I +N ++ C G+I KA LL M
Sbjct: 634 GTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSG 693
Query: 205 HGKIPSRTSHDMLI 218
G P+ ++ +I
Sbjct: 694 KGFPPNAVTYCTII 707
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A E+ +++ L P V TYT++++G+ K+GR +E + +E I G+
Sbjct: 822 GNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIE------ 875
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
P I ++ +I A G KAL+LL M+
Sbjct: 876 ------------PDNIMYSVIINAFLKEGMTTKALVLLDQMF 905
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V + YE+L+ +K + YTY + G C G + A ++ E G NVV
Sbjct: 401 VRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTT 460
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L++ E G P T +N++I L K+ +A L M E+G
Sbjct: 461 LIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENG 520
Query: 207 KIPSRTSHDMLI 218
P ++ I
Sbjct: 521 FKPDAFTYGAFI 532
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 22/155 (14%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + G + EA+++ +K GL PD + YT ++DG C++ A+ + E
Sbjct: 702 TYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-ET 760
Query: 150 IERGVTQNVVTL----------------IQLLQRLEMGHI-----PRTITFNNVIQALCG 188
E+G + ++ RL G P +T+N +I LC
Sbjct: 761 NEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCK 820
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
G + A L M + +P+ ++ L+ D+
Sbjct: 821 EGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDK 855
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVVT 160
G V++A+E+L + +G KP+VYT+T+++ G CK G + A L + I NV T
Sbjct: 328 GSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHT 387
Query: 161 LIQL---------LQRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ L R EM G +P T T+ +I C G KA L+ LM
Sbjct: 388 YTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMS 447
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G P+ +++ ++ L ++
Sbjct: 448 NEGFFPNTCTYNSIVDGLCKR 468
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 52/188 (27%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T H G +AYE++ + N+G P+ TY +I+DG CK GR+ EA +LLN
Sbjct: 421 NTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNT 480
Query: 149 AIER-----GVTQNVV---------------------------------TLIQLLQR--- 167
+ GVT ++ TLI R
Sbjct: 481 GFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNM 540
Query: 168 -----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
+++G P T+ ++I C K+ A+ M +HG P S+
Sbjct: 541 MKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGA 600
Query: 217 LIKKLDQQ 224
LI L ++
Sbjct: 601 LISGLCKE 608
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
VE A + + G+ PD TY I+ G+C+ G EA + E +ERG + TL
Sbjct: 225 VEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTL 284
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ +MG P I ++++I LC G + +A LL M ++G
Sbjct: 285 IITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNG 344
Query: 207 KIPSRTSHDMLIKKLDQQ 224
P+ +H LI L ++
Sbjct: 345 WKPNVYTHTSLIHGLCKK 362
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 18/133 (13%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V A V GL P++ Y++++ G CK G +A ELL E ++ G NV T
Sbjct: 295 VNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 354
Query: 164 LLQ------------RLEMGHI------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ RL + I P T+ +I C K+ +A +L M E
Sbjct: 355 LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQ 414
Query: 206 GKIPSRTSHDMLI 218
G +P+ ++ LI
Sbjct: 415 GLVPNTNTYTTLI 427
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 109 EMLM-NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
EML +K GL P+ TYT ++DG CK G ++A EL+ +L+
Sbjct: 405 EMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELM----------------ELMS- 447
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
G P T T+N+++ LC G+ +A LL
Sbjct: 448 -NEGFFPNTCTYNSIVDGLCKRGRAEEAFKLL 478
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
D ++ L + ++T + +V A + + + G PD +Y A++ G CK
Sbjct: 549 DEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKE 608
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQL----------------LQRLEMGHIPRTITFN 180
R +EA +L + I++G++ VT + L L+RL RT+ +
Sbjct: 609 SRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTV--H 666
Query: 181 NVIQALCGVGKIHKALLLL 199
+I+ LC K+ A L
Sbjct: 667 TLIRKLCCEKKVALAALFF 685
>gi|255544107|ref|XP_002513116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548127|gb|EEF49619.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1128
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 36 PRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
PR+ R +D IK + L + +++ K DG D + ++++ KF
Sbjct: 662 PRAFLYNRIMDALIKTAHLDLALVVYDDFKSDGL------VEDSVTYMILIK---GLCKF 712
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
GR++E E+ +K DG+ PDV Y ++ G CK GR E EL E E V
Sbjct: 713 -------GRIDEMMEVWEEMKRDGVNPDVMAYATVVTGLCKGGRVAEGYELFKEMKENKV 765
Query: 155 ----------------TQNVVTLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALL 197
+ + LLQ L + G+ +N++I+ LC V ++ KA
Sbjct: 766 LIDRAIYGVLIEAFVKDGKIGSACDLLQGLVDSGYRADLGIYNSLIEGLCNVKRVDKARK 825
Query: 198 LLFLMYEHG-KIPSRTSHDMLI-----KKLDQ 223
L +M + G ++ +T + ML+ K++D+
Sbjct: 826 LFQIMVQEGLELDFKTVNPMLVSYAEMKRMDE 857
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H R Y + +K G+KP + Y IMD K + A+ + ++ G+ ++
Sbjct: 639 HSDANRGLRVYHVYQKMKKFGVKPRAFLYNRIMDALIKTAHLDLALVVYDDFKSDGLVED 698
Query: 158 VVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLF 200
VT + L++ L + G I P + + V+ LC G++ + L
Sbjct: 699 SVTYMILIKGLCKFGRIDEMMEVWEEMKRDGVNPDVMAYATVVTGLCKGGRVAEGYELFK 758
Query: 201 LMYEHGKIPSRTSHDMLIK 219
M E+ + R + +LI+
Sbjct: 759 EMKENKVLIDRAIYGVLIE 777
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L VG V +A + +K+ +PD TY+ + F + G EA N+ I
Sbjct: 919 LKVGEVRKALSLFSEMKDLNCEPDSNTYSIAVICFVEDGNIQEACVCHNKII-------- 970
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
EM +P + ++ + LC +G+I +A++L+
Sbjct: 971 ----------EMSSVPSVAAYCSLTKGLCDIGEIDEAMMLV 1001
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 98/240 (40%), Gaps = 47/240 (19%)
Query: 12 FSVLLVDSPSRSPSAAESLDLKENPRS-----LQAQRFVDKI-----KASPLKERIDIFN 61
FS+L + +R + A + RS L+A RF + + +A +E I +F
Sbjct: 115 FSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEA-RFFNSLMRNFNRAGLFQESIKVFT 173
Query: 62 SIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL--------------------MV 101
+K G + SV FN LL L+ + A K + L M
Sbjct: 174 IMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMN 233
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++ + + ++ G +PDV TY ++DG C+ G+ A ++ ++ V N
Sbjct: 234 GMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLN---- 289
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ +I+ C +I KAL + M G + +++ LIK L
Sbjct: 290 ------------PNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGL 337
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H G +++A ++ + ++PD TY+A++ C+ G +A +LL++ +ER +
Sbjct: 373 HCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKI--- 429
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
LL G P +N + + LC GK KA
Sbjct: 430 ------LLS--GDGCKPLVAAYNPIFKYLCETGKTKKA 459
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 17/120 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E+A + + N GLK + TY ++ G C+ + + ++L G
Sbjct: 308 IEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFS------- 360
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P T TFN ++ C G + AL + M E P ++ L++ L Q
Sbjct: 361 ----------PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQ 410
>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
Length = 571
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 21/138 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A + N+ KPD +Y ++DG C+ GR EA +L E I G VVT
Sbjct: 191 IDDAVRVFRNIP----KPDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTT 246
Query: 164 LLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L EM G +P +T++++I LC G+ A+ LL M +
Sbjct: 247 LIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKER 306
Query: 207 KIPSRTSHDMLIKKLDQQ 224
K+P+ ++ +I L ++
Sbjct: 307 KLPNTITYSSVIDGLCKE 324
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 36/158 (22%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E D+F + +GT +V + L+ L D A+K F
Sbjct: 222 LPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDE--------------- 266
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI-ERGVTQNVVTLIQLLQRLEMG 171
+ G+ P+V TY++++DG CK GR+ A+ELL+ + ER
Sbjct: 267 -MARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKER------------------- 306
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+P TIT+++VI LC G + +A+ +L M G+ P
Sbjct: 307 KLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKP 344
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A E+L ++ G KPD + ++ G C GR+ EA L+E G+ N +T
Sbjct: 325 GCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTW 384
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
L R+ + V+ ALC G++ +A + M G T+ +L++ L
Sbjct: 385 -SLHGRIN----------DAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTFHLLVECL 433
Query: 222 DQQ 224
++
Sbjct: 434 SKK 436
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 96/211 (45%), Gaps = 36/211 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
K L IFN +++ G V ++ ++ AL + + D AV+ F+
Sbjct: 403 KCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSIS 462
Query: 98 --HLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
H ++ G + +A ++++ + N G++PD+ + I++ CK+GR +A + +
Sbjct: 463 TYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFT 522
Query: 150 IERGVTQNVV---TLIQ---LLQRLE-----------MGHIPRTITFNNVIQALCGVGKI 192
I G+ NV+ TL+ L+ ++E G P + + ++ C VG+I
Sbjct: 523 ISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRI 582
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+ L L + G PS T +++++ L Q
Sbjct: 583 DEGLSLFREILHKGIKPSTTLYNIILHGLFQ 613
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 33/155 (21%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117
++FN + DG FN L+ A D A F+ ++
Sbjct: 377 ELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNE----------------MREQ 420
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQ----------- 163
G++PDV TY+ ++ C++G+ ++A+E N+ I++GV ++ T LIQ
Sbjct: 421 GVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKA 480
Query: 164 ---LLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
+LQ + G P FN +I LC +G++ A
Sbjct: 481 KDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDA 515
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 34/171 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +K+ D+F+S+ G D+ +MLN T G + +
Sbjct: 333 KHGKIKDARDVFDSMAMKGQK------TDIFSYKIMLNGYATK----------GCLVDLT 376
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + +DG+ PD + + ++ + K G + A + NE E+GV
Sbjct: 377 ELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVE------------- 423
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P +T++ VI ALC +GK+ A+ M + G PS +++ LI+
Sbjct: 424 -----PDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQ 469
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ +VG++E A + + + G++P+V Y +++G+CKVGR +E + L E + +G+
Sbjct: 540 GYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIK- 598
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P T +N ++ L G+ A + M E G R ++ +
Sbjct: 599 -----------------PSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSI 641
Query: 217 LIKKL 221
++ L
Sbjct: 642 VLGGL 646
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 18/98 (18%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
P+ Y ++DGF K G N+A +L NE ++RG++ P T+N
Sbjct: 214 PNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGIS------------------PDLSTYN 255
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
V+ ALC + KA +L M + G +P +++ LI
Sbjct: 256 CVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLI 293
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 41/225 (18%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D K + + D+FN + + G + +S +N ++ AL D A
Sbjct: 214 PNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAI 273
Query: 95 FS--------------NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
N L+ G+ +EA + + + G+ PDV T ++M CK
Sbjct: 274 LRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCK 333
Query: 136 VGRSNEAME-------------------LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G+ +A + +LN +G ++ L L+ L G P +
Sbjct: 334 HGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLM--LSDGIAPDS 391
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
FN +I+A G + +A ++ M E G P ++ +I L
Sbjct: 392 HIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAAL 436
>gi|20279450|gb|AAM18730.1|AC092548_8 hypothetical protein [Oryza sativa Japonica Group]
Length = 729
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 18/143 (12%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F S L + R E A ++ + P++YT ++ FC +GR+ +A E+L++ E G
Sbjct: 403 FISAALGLRRPEIALSFFREMRRCRISPNIYTANMVLRAFCDLGRTADAAEVLDKMPEWG 462
Query: 154 VTQNVVTL-----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKA 195
V + V+ +QL ++E G +P +T++ +I LC G++ KA
Sbjct: 463 VGRTTVSFNTLIAAYCRDGVDAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKA 522
Query: 196 LLLLFLMYEHGKIPSRTSHDMLI 218
+L M G +P+ +++ LI
Sbjct: 523 NQVLSEMRVKGVMPNTVTYNTLI 545
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 25/114 (21%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A ++ M ++ +GL PDV TY I+ G CK GR +A ++L+E +GV N VT L+
Sbjct: 487 ALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRVKGVMPNTVTYNTLIH 546
Query: 167 ---------------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
R+E+ +T+N +I LC GK+ K LL
Sbjct: 547 GYVALGDNAMAGRVHEEMVKNRVELD----IVTYNALILGLCNEGKMKKVEHLL 596
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR+ +A ++L ++ G+ P+ TY ++ G+ +G + A + E ++ V ++VT
Sbjct: 517 GRMGKANQVLSEMRVKGVMPNTVTYNTLIHGYVALGDNAMAGRVHEEMVKNRVELDIVTY 576
Query: 161 ---------------LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ LL+ L+ + P TF+ +I C + +AL LL +M +
Sbjct: 577 NALILGLCNEGKMKKVEHLLRELDRAKLEPNASTFSALIVGWCKMQNSERALQLLNVMKK 636
Query: 205 HGKIPSRTSHDMLI 218
G P+ T++ M+I
Sbjct: 637 SGFHPNYTTYKMVI 650
>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g19290-like [Cucumis
sativus]
Length = 885
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 20/148 (13%)
Query: 91 AVKF--FSNHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
AV F F N L + G + +AY++ ++ G P+ + Y +++ GFCKVG+ NEA++L+
Sbjct: 572 AVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVR 631
Query: 148 EAIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVG 190
E +RG+ ++ T+ ++ L MG P +T+N +I C
Sbjct: 632 EMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAF 691
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A L+ M + G P T++++ I
Sbjct: 692 DVGGADDLMMKMSDSGWEPDLTTYNIRI 719
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA+ L ++ + G +T ++DG+ ++G N A L NE RGV + V
Sbjct: 516 GSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAF 575
Query: 162 IQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L + G +P +N++I C VGK+++AL L+ M +
Sbjct: 576 AAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNK 635
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P + +M+I L +Q
Sbjct: 636 RGLLPDIFTVNMIICGLCKQ 655
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG++ EA +++ + GL PD++T I+ G CK GR A+E + G++ ++VT
Sbjct: 620 VGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVT 679
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + G P T+N I C V KI++A+++L +
Sbjct: 680 YNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELI 739
Query: 204 EHGKIPSRTSHDMLI 218
G +P+ +++ +I
Sbjct: 740 SVGIVPNTVTYNTMI 754
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 92/189 (48%), Gaps = 26/189 (13%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------GRVEEAYEMLM 112
++NS+ G V N+ L + +N++ F+ ++++ GR++ A E M
Sbjct: 609 VYNSLI--GGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFM 666
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------- 161
++ GL PD+ TY ++DG+CK A +L+ + + G ++ T
Sbjct: 667 DMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVR 726
Query: 162 -----IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+ +L+ L +G +P T+T+N +I A+C V H A++L + + +P+ + +
Sbjct: 727 KINRAVMILEELISVGIVPNTVTYNTMINAVCNVILDH-AMILTAKLLKMAFVPNTVTVN 785
Query: 216 MLIKKLDQQ 224
+L+ + +Q
Sbjct: 786 VLLSQFCKQ 794
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
V A +++M + + G +PD+ TY + G+C V + N A+ +L E I G+ N VT
Sbjct: 693 VGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNT 752
Query: 161 -------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
+I + L+M +P T+T N ++ C G KA+
Sbjct: 753 MINAVCNVILDHAMILTAKLLKMAFVPNTVTVNVLLSQFCKQGMPEKAIF 802
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H G+ E+ +L ++ GL D + G C GR +EAM+LL +E+G+
Sbjct: 405 AGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIP 464
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
P + FN++I A G +A +M + G PS ++
Sbjct: 465 ------------------PSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCS 506
Query: 216 MLIKKL 221
L+ L
Sbjct: 507 SLLISL 512
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----------- 168
+PDVY+Y +++ C G+S+ A+ LLN IE G ++ T ++
Sbjct: 289 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARK 348
Query: 169 ------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+MG TI +N +I I +A LL M +P + + L+
Sbjct: 349 YFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLV 404
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G+ A +L + +G KP + T+ I+D FCK G A + +E + G++QN +
Sbjct: 306 GQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTI 363
>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 257
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV++A ML ++ + G PDV T++ +++G+CK R + ME+ E RG+ N VT
Sbjct: 130 RVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYT 189
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P ITF+ ++ LC ++ KA +L
Sbjct: 190 TLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAIL 243
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL- 165
A + + G+ P+V TY ++D FC GR ++A +LL IE+ + ++VT L+
Sbjct: 29 AQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALIN 88
Query: 166 ----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ L P TIT+N++I C ++ A +L M G P
Sbjct: 89 AFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSP 148
Query: 210 SRTSHDMLI 218
+ LI
Sbjct: 149 DVVTFSTLI 157
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V EA E+ + + P TY +++DGFCK R ++A +L+ +G + +VVT
Sbjct: 95 KVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFS 154
Query: 163 QLL------QRLEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ +R++ G + T+T+ +I C VG + A LL M
Sbjct: 155 TLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISC 214
Query: 206 GKIPSR-TSHDML 217
G P T H ML
Sbjct: 215 GVAPDYITFHCML 227
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 18/100 (18%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
+K DV TAI+D CK G A L E E+G+ P +T
Sbjct: 6 IKADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGI------------------FPNVLT 47
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+N +I + C G+ A LL M E P + LI
Sbjct: 48 YNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALI 87
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + + +++ N++ K+G +N +L + G+ +EA
Sbjct: 243 KAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL----------------HGYCSSGQPKEAI 286
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
L +++DG++PDV TY+ +MD CK GR EA ++ + +RG+ + T LLQ
Sbjct: 287 GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGY 346
Query: 168 ------LEM----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+EM G P F+ +I A GK+ +A+L+ M + G P+
Sbjct: 347 ATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNA 406
Query: 212 TSHDMLIKKL 221
++ +I L
Sbjct: 407 VTYGAVIGIL 416
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 21/208 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDT 90
L +N R ++A++ D + LK I + ++ + T ++ + + LL +V
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370
Query: 91 AVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
F + G+V++A + ++ GL P+ TY A++ CK GR +AM
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430
Query: 148 EAIERGVT-QNVV--TLIQ--------------LLQRLEMGHIPRTITFNNVIQALCGVG 190
+ I+ G++ N+V +LI +L+ L+ G TI FN++I + C G
Sbjct: 431 QMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG 490
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ ++ L LM G P+ +++ LI
Sbjct: 491 RVIESEKLFELMVRIGVKPNVITYNTLI 518
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 24/130 (18%)
Query: 97 NHLMVGRV---EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+H GRV E+ +E+++ + G+KP+V TY +++G+C G+ +EAM+LL+ + G
Sbjct: 485 SHCKEGRVIESEKLFELMVRI---GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ P T+T++ +I C + ++ AL+L M G P +
Sbjct: 542 LK------------------PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583
Query: 214 HDMLIKKLDQ 223
++++++ L Q
Sbjct: 584 YNIILQGLFQ 593
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 20/139 (14%)
Query: 103 RVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
R +EA E+L + +D G PDV +YT +++GF K G S++A +E ++RG+ +VV
Sbjct: 173 RSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVV 232
Query: 160 TLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ L + G +P +T+N+++ C G+ +A+ L M
Sbjct: 233 TYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM 292
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P ++ +L+ L
Sbjct: 293 RSDGVEPDVVTYSLLMDYL 311
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + + G+++EA ++L + + GLKP+ TY+ +++G+CK+ R +A+ L E G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALC 187
V+ +++T +LQ L E G T+N ++ LC
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLC 627
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 20/121 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLN-EAIERGVTQ--NVVTLIQLL--------- 165
G P+V++Y ++ G C RS EA+ELL+ A +RG +VV+ ++
Sbjct: 153 GCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDS 212
Query: 166 --------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+ L+ G +P +T+N++I ALC + KA+ +L M ++G +P +++ +
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 272
Query: 218 I 218
+
Sbjct: 273 L 273
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 36/202 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------------- 102
+F + + G +V +N L+ + + D A+K S + VG
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----- 154
R+E+A + +++ G+ PD+ TY I+ G + R+ A EL E G
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 617
Query: 155 TQNVV-----------TLIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLM 202
T N++ +Q+ Q L + + TFN +I AL VG+ +A L
Sbjct: 618 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+G +P+ ++ ++ + + Q
Sbjct: 678 SSNGLVPNYWTYRLMAENIIGQ 699
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 22/121 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ + L NV G + D +T ++ G C R+++AM++
Sbjct: 101 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI---------------- 144
Query: 162 IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE---HGKIPSRTSHDML 217
+L+R+ E+G IP ++N +++ LC + +AL LL +M + G P S+ +
Sbjct: 145 --VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202
Query: 218 I 218
I
Sbjct: 203 I 203
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 26/149 (17%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------- 98
+++ I + GT +S +N +L L D A++ F N
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 661
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT--Q 156
L VGR +EA ++ + ++GL P+ +TY + + G E +L + G T
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 721
Query: 157 NVVTLI--QLLQRLEMGHIPRTITFNNVI 183
++ I +LLQR G I R T+ ++I
Sbjct: 722 GMLNFIVRELLQR---GEITRAGTYLSMI 747
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 98/240 (40%), Gaps = 47/240 (19%)
Query: 12 FSVLLVDSPSRSPSAAESLDLKENPRS-----LQAQRFVDKI-----KASPLKERIDIFN 61
FS+L + +R + A + RS L+A RF + + +A +E I +F
Sbjct: 115 FSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEA-RFFNSLMRNFNRAGLFQESIKVFT 173
Query: 62 SIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL--------------------MV 101
+K G + SV FN LL L+ + A K + L M
Sbjct: 174 IMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMN 233
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V++ + + ++ G +PDV TY ++DG C+ G+ A ++ ++ V N
Sbjct: 234 GMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLN---- 289
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ +I+ C +I KAL + M G + +++ LIK L
Sbjct: 290 ------------PNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLIKGL 337
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H G +++A ++ + ++PD TY+A++ C+ G +A +LL++ +ER +
Sbjct: 373 HCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKI--- 429
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
LL G P +N + + LC GK KA
Sbjct: 430 ------LLS--GDGCKPLVAAYNPIFKYLCETGKTKKA 459
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 17/120 (14%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E+A + + N GLK + TY ++ G C+ + + ++L G
Sbjct: 308 IEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFS------- 360
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P T TFN ++ C G + AL + M E P ++ L++ L Q
Sbjct: 361 ----------PDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQ 410
>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
Length = 715
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 17/117 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A+EML + G KP+VYT+TA++DG CK G + +A L
Sbjct: 315 GSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRL---------------F 359
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++L++ + + P T+ ++I C K+++A +LL M E G +P+ ++ LI
Sbjct: 360 LKLVRSDD--YKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLI 414
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H G E+AYE++ + +G +++TY A +D CK GR EA +LL + G+
Sbjct: 416 GHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQA 475
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
+ T+T+ +I LC +AL+ M++ G P +++
Sbjct: 476 D------------------TVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNT 517
Query: 217 LIKKLDQQ 224
LI +Q
Sbjct: 518 LIAAFSRQ 525
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+VG E ++ ++ G+ PD +Y + +C++GR ++ L + + RG +
Sbjct: 211 LVGYAENVFD---EMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNA 267
Query: 160 TLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ + +E+G P I F ++I LC G I +A +L M
Sbjct: 268 TCTLMISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEM 327
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+ G P+ +H LI L ++
Sbjct: 328 VKKGWKPNVYTHTALIDGLCKK 349
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 45/227 (19%)
Query: 16 LVDSPSRSPSAAESLDL-KENPR-SLQAQRFVDKIKASPLKERID------IFNSIKKDG 67
+DS + E+ L K+ R LQA I S L R D F+ + K G
Sbjct: 448 FIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAG 507
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV--EEAYEMLM------------- 112
+ +N L+ A + + K F+ + +G V +E Y ++
Sbjct: 508 VQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLAL 567
Query: 113 ----NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL---- 164
+ + G PD TY A++ G CK + +EA +L +++G++ VT + L
Sbjct: 568 KFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEY 627
Query: 165 ------------LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+RL+ RT+ N +I+ LC K+ A+L
Sbjct: 628 CKQDDSATAMVILERLDKKLWIRTV--NTLIRKLCSERKVGMAVLFF 672
>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 18/127 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H GR++EAYE+ ++ G+ PD+YTYT+++ G C G+ ++A+EL NE ++G+
Sbjct: 220 GHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPL 279
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
NVV T+ +I L G+ +A L M E G P +
Sbjct: 280 NVV------------------TYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTS 321
Query: 217 LIKKLDQ 223
L+ L +
Sbjct: 322 LVSSLHK 328
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + G++++A E+ V+ GL +V TYTAI+ G K GRS EA +L +E
Sbjct: 248 TYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEM 307
Query: 150 IERGVT 155
E G+T
Sbjct: 308 TEAGLT 313
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H G+++E M + G+K D++ YT +++ CK+G + A L +E E+G+ N
Sbjct: 11 HGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDELTEKGLVAN 70
Query: 158 VVTLIQLLQ------RLEMGHI-----------PRTITFNNVIQALCGVGKIHKALLLLF 200
V T L+ +E I + +N +I C G I +A +
Sbjct: 71 VHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQV 130
Query: 201 LMYEHG 206
+M + G
Sbjct: 131 IMEKKG 136
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G ++EA+++ + ++ G + D+YT I DG K+ + EA L IE+GV NVV
Sbjct: 120 GLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSY 179
Query: 160 -TLI-------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI +L Q + + G P +T+N +I G++ +A L M
Sbjct: 180 TTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRA 239
Query: 205 HGKIPSRTSHDMLI 218
G P ++ L+
Sbjct: 240 KGIFPDIYTYTSLL 253
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 106 EAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--- 161
EA E+L+N ++ GL + Y ++DG+CK G +EA ++ ++G ++ TL
Sbjct: 88 EAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTI 147
Query: 162 --------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
LL +E G +P +++ +I C G +A L M + G
Sbjct: 148 ADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGG 207
Query: 208 IPSRTSHDMLI 218
P+ ++++LI
Sbjct: 208 EPNAVTYNVLI 218
>gi|449446855|ref|XP_004141186.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Cucumis sativus]
Length = 1079
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 72/134 (53%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVT 160
G ++EA+++L+ + DG+ PD+ T++ +++GFCKVG N+A E++++ G V NV+
Sbjct: 399 GLLDEAFQLLIEMCKDGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYREGFVPNNVIF 458
Query: 161 LIQLLQRLEMGHIPRTITF----------------NNVIQALCGVGKIHKALLLLFLMYE 204
+ ++G++ + F N+++ +LC GK+ +A L +
Sbjct: 459 STLIYNSCKVGNVYEAMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISR 518
Query: 205 HGKIPSRTSHDMLI 218
G +P+ + D +I
Sbjct: 519 IGLVPNSVTFDCII 532
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181
+ ++T ++DG C+ G +EA +LL E + GV P ITF+
Sbjct: 384 NCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVH------------------PDIITFSV 425
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+I C VG I+KA ++ +Y G +P+ LI
Sbjct: 426 LINGFCKVGNINKAKEVMSKIYREGFVPNNVIFSTLI 462
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 37/188 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLL----------MALVMLNEQD---------TAVK 93
LK+ ++I ++++G ++ +N LL ALV+++ + T
Sbjct: 191 LKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNM 250
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F + R + Y +L ++N + P+ +Y +++GF K G+ A + NE IE
Sbjct: 251 FIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELN 310
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
++ P IT+N +I C G +AL +L +M + P+ +
Sbjct: 311 LS------------------PNLITYNILINGYCINGNFEEALRVLDVMEANDVRPNEVT 352
Query: 214 HDMLIKKL 221
L+ L
Sbjct: 353 IGTLLNGL 360
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 89 DTAVKFFSNHLMVGRVEEAYE-MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
D ++ + MVG + ML+ G KP VYT IM K R++
Sbjct: 109 DLLIRVYLRQGMVGHAVNTFSSMLIR----GFKPSVYTCNMIMASMVKNCRAHLVWSFFK 164
Query: 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ + V NV + FN +I LC GK+ KA+ +L +M +G
Sbjct: 165 QMLTSRVCPNVSS------------------FNILISVLCVQGKLKKAVNILTMMERNGY 206
Query: 208 IPSRTSHDMLI 218
+P+ S++ L+
Sbjct: 207 VPTIVSYNTLL 217
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A +L ++ +G P + +Y ++ CK GR A+ L++ +G+ +V T
Sbjct: 189 GKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTY 248
Query: 162 IQLL------QRLEMGHI-----------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ R G++ P +++N +I GKI A + M E
Sbjct: 249 NMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIE 308
Query: 205 HGKIPSRTSHDMLI 218
P+ ++++LI
Sbjct: 309 LNLSPNLITYNILI 322
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 29/134 (21%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-----GRVEEAYEMLMN 113
I+NS K G + F A + LN Q+ A F N L+ G++ EA E L +
Sbjct: 462 IYNSCKV-GNVYEAMKF----YAAMNLNGQN-ADNFTCNSLVASLCENGKLVEAEEFLHH 515
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
+ GL P+ T+ I++G+ VG + A + + I GH
Sbjct: 516 ISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDRMIS------------------CGHH 557
Query: 174 PRTITFNNVIQALC 187
P T+ ++++ LC
Sbjct: 558 PSPFTYGSLLKVLC 571
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 92/238 (38%), Gaps = 33/238 (13%)
Query: 3 ISAANSPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNS 62
IS + P+PF+ S + L +N +A++ + K+ PL +N+
Sbjct: 552 ISCGHHPSPFTY---------GSLLKVLCKGQN--FWEARKLLKKLHCIPLAVDTISYNT 600
Query: 63 ----IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV-KND 117
I K G + ++ +L + T S + GR+ A+ L + + +
Sbjct: 601 LIVEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKE 660
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGH---- 172
L + YT +DG K G+S A+ L E E+G++ +++ L + MG
Sbjct: 661 ILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSA 720
Query: 173 ------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IP TFN ++ I L LM G P+R ++ LI
Sbjct: 721 SSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLI 778
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 17/136 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ + A + ++ GL D+ +I DG+ ++G+ A L+++ + V N+ T
Sbjct: 680 GQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKNVIPNLTTF 739
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL G P +T++++I LC G + + +L +
Sbjct: 740 NILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGIKMLKMFIA 799
Query: 205 HGKIPSRTSHDMLIKK 220
+ +MLI+K
Sbjct: 800 ESSTIDDLTFNMLIRK 815
>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
Length = 1070
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 81/202 (40%), Gaps = 36/202 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLM----------ALVMLNEQDT---------AVK 93
L+E IFN +K G S +N L AL +L E T +
Sbjct: 491 LEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTE 550
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
GRV EA + L + G PD+ TY+A M+G C G ++A+ L + +
Sbjct: 551 MVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKY 610
Query: 154 VTQNVVT---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+VV LI ++ LE G P +T+N +I C G+I KA+
Sbjct: 611 YLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAI 670
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
L M K P+ ++ LI
Sbjct: 671 SYLDKMVYEEKQPTVITYTSLI 692
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+E+A L + + +P V TYT+++DGFC GR +EA++L E E+G N +
Sbjct: 663 TGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIA 722
Query: 161 LIQLLQRL-EMGHIPRTITF 179
+ L + G I +T+
Sbjct: 723 YTAFINGLRKCGRIETALTY 742
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 37/185 (20%)
Query: 55 ERIDIFNSIKKD----GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
+++D+ ++ KD G + FNDL+ L ++ R+EE Y +
Sbjct: 454 KKLDMALALTKDMISLGCKGKILMFNDLIHELCNMD----------------RLEEGYGI 497
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG---VTQNVVTLIQLL-- 165
+K+ GL P +TY ++ G C+ A++LL E G +N ++Q L
Sbjct: 498 FNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCF 557
Query: 166 ------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
L++G +P +T++ + +C G++ AL L + +P +
Sbjct: 558 SGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVA 617
Query: 214 HDMLI 218
H++LI
Sbjct: 618 HNILI 622
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 82 LVMLNEQDTAVKFFS---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
+V +Q T + + S GR +EA ++ ++ G P+ YTA ++G K GR
Sbjct: 676 MVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGR 735
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
A+ E + +G + +L+ + L
Sbjct: 736 IETALTYFEEMVTKGFELDTFSLLYFINFL 765
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VEE +L ++K GLKPD Y Y ++ CK GR + A+E+L+ I G ++V
Sbjct: 315 GKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNY 374
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L L E+G P ++N++ AL G +AL ++ M +
Sbjct: 375 NTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLD 434
Query: 205 HGKIPSRTSHDMLIKKL 221
G P +++ LI L
Sbjct: 435 KGVDPDGITYNSLISCL 451
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++ AY++L +KN G PD+ TY ++ C G + A+E N+ ++ VVT
Sbjct: 141 RIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYT 200
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L++ LE+ P T+N++I+ +C G + +A ++ +
Sbjct: 201 ILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSK 260
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P ++++L++ L Q
Sbjct: 261 GYAPDVITYNILLRGLLNQ 279
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A++++ ++ + G PDV TY ++ G G+ EL+++ + RG NVVT
Sbjct: 245 GYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTY 304
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + + G P ++ +I ALC G++ A+ +L +M
Sbjct: 305 SVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMIS 364
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P +++ ++ L +Q
Sbjct: 365 DGCVPDIVNYNTILACLCKQ 384
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---- 157
GRV+ A E+L + +DG PD+ Y I+ CK R++EA+ + + E G + N
Sbjct: 350 GRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSY 409
Query: 158 -------------VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
V L +L+ L+ G P IT+N++I LC G + +A+ LL M
Sbjct: 410 NSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDM 467
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 97/212 (45%), Gaps = 36/212 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------------- 94
+A+ + + + +K G + + +N L+ +L D+A++F
Sbjct: 138 RANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVV 197
Query: 95 -----FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
L+ G ++EA ++L + L+PD++TY +I+ G C+ G + A ++++
Sbjct: 198 TYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSI 257
Query: 150 IERGVTQNVVTLIQLLQRL------EMGH------IPR-----TITFNNVIQALCGVGKI 192
+G +V+T LL+ L E G+ + R +T++ +I ++C GK+
Sbjct: 258 SSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKV 317
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ + LL M + G P +D LI L ++
Sbjct: 318 EEGVGLLKDMKKKGLKPDGYCYDPLIAALCKE 349
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 21/138 (15%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMAL-----------VMLNEQDTAV--------KFF 95
E + IF + + G + + S +N + AL ++L D V
Sbjct: 389 EALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLI 448
Query: 96 SNHLMVGRVEEAYEML--MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
S G V+EA E+L M +++ KP V +Y ++ G CKV R ++A+E+L +++G
Sbjct: 449 SCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKG 508
Query: 154 VTQNVVTLIQLLQRLEMG 171
N T L++ + G
Sbjct: 509 CRPNETTYTFLIEGIGFG 526
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A +++ ++N G PD+ Y AI+ GFC+ R + A ++L+ +G + ++VT
Sbjct: 108 IDKAIQVMHILENHG-HPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNI 166
Query: 164 LL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ Q L+ P +T+ +I+A G I +A+ LL M E
Sbjct: 167 LIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEIN 226
Query: 207 KIPSRTSHDMLIKKLDQQ 224
P +++ +I+ + ++
Sbjct: 227 LQPDMFTYNSIIRGMCRE 244
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + + +++ S+ K+G + +N ++ + G+ +EA
Sbjct: 246 KAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV----------------HGYCSSGQPKEAI 289
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
L + +DG++PDV TY ++MD CK GR EA ++ + +RG+ + T LLQ
Sbjct: 290 GFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349
Query: 168 ------LEM----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+EM G P F+ +I A GK+ +A+L+ M + G P
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409
Query: 212 TSHDMLIKKL 221
++ +I L
Sbjct: 410 VTYGTVIGIL 419
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 103 RVEEAYEMLMNVKNDG--LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
R +EA E+L + +DG PDV +YT +++GF K G ++A +E ++RG+ NVVT
Sbjct: 177 RSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVT 236
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L + G +P T+N+++ C G+ +A+ L M+
Sbjct: 237 YSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMH 296
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 297 SDGVEPDVVTYNSLMDYL 314
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 21/149 (14%)
Query: 60 FNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
FNSI K+G DL++ + + + T + + G+++EA ++L ++
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------- 168
+ G+KPD TY +++G+CK+ R +A+ L E GV+ +++T +LQ L
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 601
Query: 169 ----------EMGHIPRTITFNNVIQALC 187
E G T+N ++ LC
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLC 630
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 21/208 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDT 90
L +N R +A++ D + LK I + ++ + T ++ + + LL +V
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373
Query: 91 AVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
F + G+V++A + ++ GL PD TY ++ CK GR +AM
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433
Query: 148 EAI-ERGVTQNVV--TLIQ--------------LLQRLEMGHIPRTITFNNVIQALCGVG 190
+ I ER N+V +LI +L+ L+ G TI FN++I + C G
Sbjct: 434 QMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEG 493
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ ++ L LM G P ++ LI
Sbjct: 494 RVIESEKLFDLMVRIGVKPDIITYSTLI 521
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++AY + + G+ P+V TY++I+ CK ++AME+L ++ GV N T
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L+++ G P +T+N+++ LC G+ +A + M +
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332
Query: 205 HGKIPSRTSHDMLIK 219
G P T++ L++
Sbjct: 333 RGLKPEITTYGTLLQ 347
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------- 98
+++ I + GT +S +N +L L N D A++ F N
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L VGR +EA ++ + +GL PDV TY+ + + + G E +L E G T N
Sbjct: 665 LKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724
Query: 159 VTLIQLLQR-LEMGHIPRTITF 179
L ++++ L+ G I R T+
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTY 746
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++ + L NV G + D +T ++ G C R+++AM++ + R +TQ
Sbjct: 104 AGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI----VLRRMTQ---- 155
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+G IP ++N +++ LC + +AL LL +M + G
Sbjct: 156 ---------LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG 192
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 20/167 (11%)
Query: 78 LLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
LL ++V + + V + + + + R+E+A + +++ G+ PD+ TY I+ G
Sbjct: 536 LLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF 595
Query: 135 KVGRSNEAMELLNEAIERGV-----TQNVV-----------TLIQLLQRLEMGHIP-RTI 177
+ R+ A EL E G T N++ +++ Q L + + T
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 655
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
TFN +I AL VG+ +A L + +G +P ++ ++ + L +Q
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQ 702
>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
Length = 1013
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 39/191 (20%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF------------------ 94
++E + +F G + ++ L+ L + TA KF
Sbjct: 500 IEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNV 559
Query: 95 FSNHL-MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F N L M+G+ +EA L ++N GLKPD TY ++ C+ G + +A++LL+E
Sbjct: 560 FINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHE----- 614
Query: 154 VTQNVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
++M I P IT+N ++ L G G + KA LL M G PS
Sbjct: 615 --------------MKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSL 660
Query: 213 SHDMLIKKLDQ 223
+H +++ Q
Sbjct: 661 THRRVLQACSQ 671
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR EAY + + G P+ TY ++D K GR E + LL E + RGV ++VT
Sbjct: 288 GRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTY 347
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L + G P +T+ +I ALC + +A +L M E
Sbjct: 348 TALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEE 407
Query: 205 HGKIPSRTSHDMLI 218
P+ + +I
Sbjct: 408 KSISPNVVTFSSVI 421
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V+ A +L +K G+ P+V TYT + +C+ EA +L + GV +VVTL
Sbjct: 218 GQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTL 277
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++G P +T+ +I +L G+ + L LL M
Sbjct: 278 SALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVS 337
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G + ++ L+ L +Q
Sbjct: 338 RGVVMDLVTYTALMDWLGKQ 357
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 37/175 (21%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------NHLMV----------GR 103
+K+ G N +V + L+ QD A++ + N +V G+
Sbjct: 440 MKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGK 499
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+EEA + + GL D YT ++DG K G A + E ++R +
Sbjct: 500 IEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNM--------- 550
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P + +N I LC +GK +A L M G P +++++ +I
Sbjct: 551 ---------LPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMI 596
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 36/210 (17%)
Query: 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------- 96
V + ++E D++ + ++G V + L+ L A F
Sbjct: 247 VYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAA 306
Query: 97 -NHLM----------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
NH+ GR +E +L + + G+ D+ TYTA+MD K G+++E +
Sbjct: 307 PNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDT 366
Query: 146 LNEAIERGVTQNVVTLIQLLQRLEMGH-----------------IPRTITFNNVIQALCG 188
L A+ ++ N VT L+ L H P +TF++VI
Sbjct: 367 LRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVK 426
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G + KA +M E G P+ ++ LI
Sbjct: 427 RGLLDKATEYKRMMKERGINPNVVTYGTLI 456
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR+ EA +L+ ++ GL+P+ TY + G K EAM L E + +G
Sbjct: 777 VGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGF------ 830
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P+ T+N +I G + +A L M + G P+ ++D+L+
Sbjct: 831 ------------VPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILV 876
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 35 NPRSLQAQRFVDKIKASP-LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
+P SL +R + S L +DI + G + ++ +N LL L
Sbjct: 656 SPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCY--------- 706
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
H G +A +L + G+ PD T+ A++ G CK + A + + +
Sbjct: 707 ----H---GMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQN 759
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
++ N+ TFN ++ L VG+I +A +L M + G P+ +
Sbjct: 760 ISPNIA------------------TFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLT 801
Query: 214 HDMLIKKLDQQ 224
+D+L +Q
Sbjct: 802 YDILATGHGKQ 812
>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 578
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 37 RSLQAQRFVDKIKASPLKERID----IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV 92
R+ Q + + L ++D +FN + + G + ++N L+ + N+ A
Sbjct: 244 RAGQRKEVTSLLNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEAR 303
Query: 93 KFFSNHLMVGR---------------------VEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
K F H+MV R V+EA + + GL PDV++Y ++
Sbjct: 304 KLF--HMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIK 361
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EMGHI---- 173
G+CK R EAM LL + + + N++T ++ L EM +
Sbjct: 362 GYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPP 421
Query: 174 PRTITFNNVIQALCGVGKIHKALLLL-FLMYEHGKIPSRTSHDMLI 218
P T+N ++++LC + + KA+ L++E P+ S+++LI
Sbjct: 422 PDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILI 467
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 33/151 (21%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG----------------RSNEAMEL 145
G + EA + + G+ PD++TY++++ G C+ G + +EA EL
Sbjct: 211 GNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEAREL 270
Query: 146 LNEAIERGVTQNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCG 188
N IERG +++ L+ +E G P TIT+ ++ C
Sbjct: 271 FNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCL 330
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ K+ +A L M E G +P S+++LIK
Sbjct: 331 IDKVDEARNLFHGMIERGLVPDVWSYNILIK 361
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 20/141 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV- 159
+G+++ A+ ++ + G +P+V T+T +M GFC + +A+ + +E + R + + V
Sbjct: 102 MGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARRIRFDDVL 161
Query: 160 --TLI---------------QLLQRLEMGHI--PRTITFNNVIQALCGVGKIHKALLLLF 200
TLI QLLQ++E + P I +N V+ LC G I++A +L
Sbjct: 162 YGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCS 221
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G P ++ LI L
Sbjct: 222 KMIVQGIFPDIFTYSSLIYGL 242
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 33/152 (21%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
V+ +N LL +L + + A+ FF HL+ R P+V++Y ++
Sbjct: 424 VTTYNILLESLCRIECVEKAIAFFK-HLIFER--------------SFAPNVWSYNILIS 468
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191
G CK R +EA+ L N + + +P +T+N ++ AL +
Sbjct: 469 GCCKNRRLDEAINLFNHMCFKNL------------------VPDIVTYNILLDALFNGQQ 510
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+ KA+ LL + + G P+ ++++LI L +
Sbjct: 511 LDKAIALLVQIVDQGISPNLRTYNILINGLHK 542
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 101 VGRVEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+G+ A ++L ++ L KP++ Y ++ G CK G NEA L ++ I +G+ ++
Sbjct: 174 IGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPDIF 233
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
T L+ L + +T +++ C K+ +A L +M E G+ HD++
Sbjct: 234 TYSSLIYGLCRAGQRKEVT--SLLNGFCLNNKVDEARELFNVMIERGE-----QHDII 284
>gi|224131960|ref|XP_002328150.1| predicted protein [Populus trichocarpa]
gi|222837665|gb|EEE76030.1| predicted protein [Populus trichocarpa]
Length = 347
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G V+EA ++ ++ G P+V YTA++DGFCK + ++A + + G+T N +
Sbjct: 190 GLVQEALKLFGTMREKGTIPEVVIYTAVVDGFCKAHKLDDAKRIFRKMQSNGITPNAFSY 249
Query: 161 --LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LIQ L + LE+GH P TF +I LC + +A ++ + +
Sbjct: 250 AVLIQGLSKCNLFDDAIDFCFEMLELGHSPNVTTFVGLIDGLCREKGVEEARTVIGTLRQ 309
Query: 205 HG 206
G
Sbjct: 310 KG 311
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A ++ +K GL P+ A++DG CK G EA++L E+G
Sbjct: 161 QDAEQIFNKMKETGLIPNA---VAMLDGLCKDGLVQEALKLFGTMREKGT---------- 207
Query: 165 LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
IP + + V+ C K+ A + M +G P+ S+ +LI+ L +
Sbjct: 208 --------IPEVVIYTAVVDGFCKAHKLDDAKRIFRKMQSNGITPNAFSYAVLIQGLSK 258
>gi|293334435|ref|NP_001169564.1| uncharacterized protein LOC100383443 [Zea mays]
gi|224030115|gb|ACN34133.1| unknown [Zea mays]
gi|414872643|tpg|DAA51200.1| TPA: hypothetical protein ZEAMMB73_501808 [Zea mays]
Length = 424
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA + + GL+PDV TY +++G CK R A E+ +E + +G T N VT
Sbjct: 249 RIYEAGRLFRRMGEKGLEPDVVTYNCLINGLCKTYRVERAHEMFDEMLRKGCTPNRVTYN 308
Query: 163 QLLQRLEM-----------------GH-IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ + GH + + T+ VI +LC ++ +A L M E
Sbjct: 309 SFIRYYSVVNQVDKAVEWMREMVARGHGMASSSTYTPVIHSLCESRRVTEARQFLIDMAE 368
Query: 205 HGKIPSRTSHDMLIKKLD 222
G +P ++ ++ +D
Sbjct: 369 SGHVPREHTYKLVKAAID 386
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 102 GRVEEAYEMLMNVKNDG--LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GR +A +L ++ G KPD YTYT ++ +C++G + + + +
Sbjct: 200 GRFSDARFLLDQMERPGARCKPDTYTYTVLISWYCRIG--------VGTGCRKAARRRIY 251
Query: 160 TLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+L +R+ E G P +T+N +I LC ++ +A + M G P+R +++ I
Sbjct: 252 EAGRLFRRMGEKGLEPDVVTYNCLINGLCKTYRVERAHEMFDEMLRKGCTPNRVTYNSFI 311
Query: 219 K 219
+
Sbjct: 312 R 312
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--------V 154
RVE A+EM + G P+ TY + + + V + ++A+E + E + RG
Sbjct: 284 RVERAHEMFDEMLRKGCTPNRVTYNSFIRYYSVVNQVDKAVEWMREMVARGHGMASSSTY 343
Query: 155 TQNVVTLIQ----------LLQRLEMGHIPRTITFNNVIQALCGVGK 191
T + +L + L+ E GH+PR T+ V A+ G+
Sbjct: 344 TPVIHSLCESRRVTEARQFLIDMAESGHVPREHTYKLVKAAIDDAGE 390
>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
Length = 798
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 27/195 (13%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDT 90
L +N RS++A++ D + K I+ ++ T + + LL +V Q
Sbjct: 286 LCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPD 345
Query: 91 AVKF------FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
F ++ H G V+EA ++ GL P++ TY +MD C+VG+ ++AM
Sbjct: 346 HYIFNILIGAYAKH---GMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMS 402
Query: 145 LLNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALC 187
+ I G+T N V L+ L EM G P TI FN ++ LC
Sbjct: 403 QFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLC 462
Query: 188 GVGKIHKALLLLFLM 202
G + +A + LM
Sbjct: 463 KEGMVTRAKNIFDLM 477
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ N + K+G + DL++ + + + T + + G+V+EA ++L + DG
Sbjct: 457 LLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDG 516
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+KP+ TY I++G+CK GR +A L + +GV +V +L L
Sbjct: 517 VKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGL 566
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 28/137 (20%)
Query: 94 FFS---NHL----MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
FF+ NHL MV R + +++++ V ++ DV TYT ++DG+C G+ +EA +LL
Sbjct: 453 FFNTLLNHLCKEGMVTRAKNIFDLMVRVD---VQCDVITYTTLIDGYCLDGKVDEATKLL 509
Query: 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+ GV P +T+N +I C G+I A L M G
Sbjct: 510 EGMVLDGVK------------------PNEVTYNTIINGYCKNGRIEDACSLFRQMASKG 551
Query: 207 KIPSRTSHDMLIKKLDQ 223
P + ++ L Q
Sbjct: 552 VNPGIVIYSTILHGLFQ 568
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 39/188 (20%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN--------------HL 99
KE I IF + +DG V +N L++ L A K F + L
Sbjct: 258 KEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTL 317
Query: 100 MVGRVEEAYEMLMN------VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ G E Y + M+ V+N G +PD Y + ++ + K G +EAM ++ ++G
Sbjct: 318 LHGYATEGYLVQMHQLLDVMVRN-GTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQG 376
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ N+VT + V+ ALC VGK+ A+ + G P+
Sbjct: 377 LHPNIVT------------------YGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVV 418
Query: 214 HDMLIKKL 221
LI L
Sbjct: 419 FRTLIHGL 426
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++AY + + + G+ P+ TY ++ G+C G+ EA+ + + GV +VVT
Sbjct: 220 GQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTY 279
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L + GH P + + ++ G + + LL +M
Sbjct: 280 NTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVR 339
Query: 205 HGKIPSRTSHDMLI 218
+G P ++LI
Sbjct: 340 NGTQPDHYIFNILI 353
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 22/123 (17%)
Query: 103 RVEEAYEMLMNVKND----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
R ++A +L + D G PDV +YT +++G + G+ ++A L +E +++G++
Sbjct: 182 RSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMS--- 238
Query: 159 VTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P IT+N ++ C GK +A+ + M G P +++ L+
Sbjct: 239 ---------------PNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLM 283
Query: 219 KKL 221
L
Sbjct: 284 VYL 286
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+E+A + + + G+ P + Y+ I+ G + R A EL I+ G+ + T
Sbjct: 535 GRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTY 594
Query: 162 IQLLQ----------RLEMGHIPRTI-------TFNNVIQALCGVGKIHKALLLLFLMYE 204
+LQ L M H I TFN +I AL G+ +A L +
Sbjct: 595 NIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLA 654
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P+ ++ +++K L +Q
Sbjct: 655 RGLVPNVVTYWLMMKSLIEQ 674
>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
Group]
gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 543
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA + ++ G+ P+VYTYTA++D + G+ A ELL + I+ G N T
Sbjct: 263 GRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATF 322
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK--IHKALLLLFLM 202
++ Q ++G P IT+N +++ CG G+ + A+ +L M
Sbjct: 323 NAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRM 382
Query: 203 YEHGKIPSRTSHDMLIK 219
G IP + + ++K
Sbjct: 383 IAKGCIPDCHTFNPMLK 399
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ----------------- 163
PDV YT ++ +C+ GR NEA + E + GVT NV T
Sbjct: 247 PDVVLYTTLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQEL 306
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
L Q ++ G P T TFN +++A G+ + L + M + G P +++ L++
Sbjct: 307 LCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLME 362
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 20/124 (16%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN--EAMELLNEAIERGVT 155
H+ GR E+ ++ ++ G +PD+ TY +M+ C G+SN AM++L I +G
Sbjct: 329 HVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSNLDAAMKMLTRMIAKGC- 387
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
IP TFN +++ + +G ++ A L M E P+ +++
Sbjct: 388 -----------------IPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPNVVTYN 430
Query: 216 MLIK 219
+L++
Sbjct: 431 LLMR 434
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 22/122 (18%)
Query: 104 VEEAYEMLMNVKND----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+E++ +M++ +K D G++P+V TY A+++ FC G A L E +E +
Sbjct: 438 LEKSMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMTLREMVEEKALK--- 494
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P ++ V+ L G++ + L+ +M + G I SR ++D L +
Sbjct: 495 --------------PTKPVYDMVLALLRKAGQLRRHEELVEMMVDRGFI-SRPANDALWR 539
Query: 220 KL 221
+
Sbjct: 540 AI 541
>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 913
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 36/206 (17%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------- 96
A +K +DI + +++ G +V +N L+ L+ N+ + AV +
Sbjct: 570 AGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHT 629
Query: 97 ------NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150
+ G + +A+E +K GLK DVY Y ++ CK GR A+ + E
Sbjct: 630 YTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMS 689
Query: 151 ERGVTQN----------------VVTLIQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIH 193
+ + +N V L+++++ +P I T+ + I A C G +
Sbjct: 690 SQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQ 749
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIK 219
+A ++ M + G P+ ++ LIK
Sbjct: 750 RAQTVIDEMSDVGLKPNLKTYTTLIK 775
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVM-------------LNEQDTAVKFFSNHLMV-- 101
+ F IK+ G V + LL A ++ Q A F ++++
Sbjct: 647 FEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDG 706
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V EA +++ +K DG+ P+++TYT+ ++ CK G A +++E + G+ N
Sbjct: 707 WARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPN 766
Query: 158 VVTLIQLLQRLEMGHIP 174
+ T L++ +P
Sbjct: 767 LKTYTTLIKGWARASLP 783
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 34/174 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K + + I I ++ G + ++ L+ + L++ A + F
Sbjct: 463 VKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFE----------- 511
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
EML GL+PD Y +++ FCK+G + A+ +L + +Q+
Sbjct: 512 -EML----KSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEK----------------MQK 550
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
M P F +I+ G + +AL +L LM G P+ +++ LI L
Sbjct: 551 ERMQ--PSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGL 602
>gi|222612695|gb|EEE50827.1| hypothetical protein OsJ_31237 [Oryza sativa Japonica Group]
Length = 550
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 18/143 (12%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F S L + R E A ++ + P++YT ++ FC +GR+ +A E+L++ E G
Sbjct: 224 FISAALGLRRPEIALSFFREMRRCRISPNIYTANMVLRAFCDLGRTADAAEVLDKMPEWG 283
Query: 154 VTQNVVTL-----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKA 195
V + V+ +QL ++E G +P +T++ +I LC G++ KA
Sbjct: 284 VGRTTVSFNTLIAAYCRDGVDAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKA 343
Query: 196 LLLLFLMYEHGKIPSRTSHDMLI 218
+L M G +P+ +++ LI
Sbjct: 344 NQVLSEMRVKGVMPNTVTYNTLI 366
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 25/114 (21%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A ++ M ++ +GL PDV TY I+ G CK GR +A ++L+E +GV N VT L+
Sbjct: 308 ALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRVKGVMPNTVTYNTLIH 367
Query: 167 ---------------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
R+E+ +T+N +I LC GK+ K LL
Sbjct: 368 GYVALGDNAMAGRVHEEMVKNRVELD----IVTYNALILGLCNEGKMKKVEHLL 417
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR+ +A ++L ++ G+ P+ TY ++ G+ +G + A + E ++ V ++VT
Sbjct: 338 GRMGKANQVLSEMRVKGVMPNTVTYNTLIHGYVALGDNAMAGRVHEEMVKNRVELDIVTY 397
Query: 161 ---------------LIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ LL+ L+ + P TF+ +I C + +AL LL +M +
Sbjct: 398 NALILGLCNEGKMKKVEHLLRELDRAKLEPNASTFSALIVGWCKMQNSERALQLLNVMKK 457
Query: 205 HGKIPSRTSHDMLI 218
G P+ T++ M+I
Sbjct: 458 SGFHPNYTTYKMVI 471
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S +G + EA ++ + GL+PD T+T +++G+CK G +A + N
Sbjct: 388 TYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHM 447
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
I+ G + NVVT L+ L ++G P T+N+++ LC G I
Sbjct: 448 IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNI 507
Query: 193 HKALLLL 199
+A+ L+
Sbjct: 508 EEAVKLV 514
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A + + + + PDV TYTAI+ GFC++G EA +L +E +G+ + VT
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L+ ++ G P +T+ +I LC G + A LL M++
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ ++ L
Sbjct: 485 IGLQPNIFTYNSIVNGL 501
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I +F + G W+V+ +N ++ + L GR++EA+ +L+ ++
Sbjct: 231 IIVFREFPEVGVCWNVASYNIVIHFVCQL----------------GRIKEAHHLLLLMEL 274
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRL----- 168
G PDV +Y+ +++G+C+ G ++ +L+ +G+ N ++I LL R+
Sbjct: 275 KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAE 334
Query: 169 ------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
EM G +P T+ + +I C G I A + M+ P ++ +I
Sbjct: 335 AEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIIS 394
Query: 220 KLDQ 223
Q
Sbjct: 395 GFCQ 398
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA +++ + GL D TYT +MD +CK G ++A E+L E + +G+
Sbjct: 505 GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ------ 558
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +TFN ++ C G + LL M G P+ T+ + L+K+
Sbjct: 559 ------------PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 605
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
+ N + KDG VS ++L +LV T V + + + G +E A+ +K
Sbjct: 346 LLNGLCKDG---KVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMK 402
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--------------- 160
+ +KPD TY A+++G CK R A +LL E + GV V T
Sbjct: 403 SRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLE 462
Query: 161 --LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
I L + E G P +++ +++ A C GKI +A+ +L M+ +P+ ++ +I
Sbjct: 463 KCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAII 522
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 33/188 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA + D+ ++ +G N +V FN L+ A + G++E+
Sbjct: 421 CKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA----------------YGRTGQLEKC 464
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------ 161
+ +L ++ +GLKP+V +Y +I++ FCK G+ EA+ +L++ + V N
Sbjct: 465 FIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDA 524
Query: 162 ----------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L+++++ I P +T+N +I+ LC +I +A ++ + H IP
Sbjct: 525 YVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPD 584
Query: 211 RTSHDMLI 218
S++ LI
Sbjct: 585 AVSYNTLI 592
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ G + EA ML + DG P + ++Y ++ G + GR +A+E+ +E ER V N
Sbjct: 175 VAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPN 234
Query: 158 VVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+T ++ Q + G P IT+N ++ LC G++ + LL
Sbjct: 235 HITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLD 294
Query: 201 LMYEHGKIPSRTSHDMLIKKLDQ 223
M +P ++ +L L +
Sbjct: 295 EMASQKMVPDGFTYSILFDGLSR 317
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 86/184 (46%), Gaps = 29/184 (15%)
Query: 59 IFNSIKKDGT-NWSVSDFNDLLMALVMLNEQ--DTAVKFFSNHLMVGRVEEAYEMLMNVK 115
I N+ K+G +V+ +D+ V+ N Q + + + H G ++A+ ++ +K
Sbjct: 486 IVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEH---GPNDQAFILVEKMK 542
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-------------------AIERGVTQ 156
++G+ P + TY ++ G C + +EA E++N RG
Sbjct: 543 SNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRG--- 599
Query: 157 NVVTLIQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
N+ + L QR+ I T+ T++ +I L G G++++ L M ++ +PS H+
Sbjct: 600 NIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHN 659
Query: 216 MLIK 219
++++
Sbjct: 660 IMVE 663
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER----- 152
H+ G +E + + + GLKP+ TY ++ G C+ GR E LL+E +
Sbjct: 245 HIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPD 304
Query: 153 GVTQNVV-----------TLIQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
G T +++ ++ L + L+ G T + ++ LC GK+ A +L
Sbjct: 305 GFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQ 364
Query: 201 LMYEHGKIPSRTSHDMLIKKLDQ 223
+ G +P+R ++ LI Q
Sbjct: 365 SLVNAGLVPTRVIYNTLINGYCQ 387
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V +A E+ ++ DG++ D TY +++ G C GR ++A L+ + + R + NV+T
Sbjct: 187 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 246
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++L + + + P T+N++I LC G++ +A +L LM
Sbjct: 247 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 306
Query: 204 EHGKIPSRTSHDMLI 218
G +P +++ LI
Sbjct: 307 TKGCLPDVVTYNTLI 321
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M GRV+EA +ML + G PDV TY +++GFCK R +E +L E +RG+ + +
Sbjct: 291 MHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTI 350
Query: 160 TLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
T ++Q M P T++ ++ LC ++ KAL+L
Sbjct: 351 TYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLF 404
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A +++ ++ G +PDV Y I+DG CK+G N+A+EL + GV + VT
Sbjct: 154 RVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYN 213
Query: 163 QLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L +P ITF VI GK +A+ L M
Sbjct: 214 SLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRR 273
Query: 206 GKIPSRTSHDMLIKKL 221
P +++ LI L
Sbjct: 274 CVDPDVFTYNSLINGL 289
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 91/216 (42%), Gaps = 36/216 (16%)
Query: 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98
+ F K + L+E ID+F + + S+ DF+ +L + D + F +
Sbjct: 36 FWGRTFSTKRSSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHM 95
Query: 99 LMVGRVEE--AYEMLMNV-----------------KNDGLKPDVYTYTAIMDGFCKVGRS 139
+ G + +Y +++N G +PDV T +++++GFC+ R
Sbjct: 96 EVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRV 155
Query: 140 NEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNV 182
+A++L+++ E G +VV ++L R+E G +T+N++
Sbjct: 156 FDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSL 215
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ LC G+ A L+ M +P+ + +I
Sbjct: 216 VAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVI 251
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
+G VE+A+++ ++ GLKPDV +YT ++ GFC+
Sbjct: 429 IGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCR 463
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 34/177 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------- 98
K+ + E +F + + G +N ++ D A + FS
Sbjct: 326 KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYS 385
Query: 99 -LMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
L+ G RVE+A + N++ ++ D+ TY ++ G CK+G +A +L +
Sbjct: 386 ILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK 445
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
G+ P +++ +I C + K+ LL M E G +P
Sbjct: 446 GLK------------------PDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
>gi|357444861|ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355481756|gb|AES62959.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 1430
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 55/229 (24%)
Query: 42 QRFVDK-------------IKASPLKERIDIFNSIKKDGTNWSVSDFN----------DL 78
+RFVDK K++ L++ ++ +K+ G + +N D+
Sbjct: 453 RRFVDKPTILIYNNLIDSLCKSNRLEKSYELLREMKELGIEPTHFTYNSIYGCLCKRKDV 512
Query: 79 LMALVMLNEQDTA------------VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
A VML E + VK +H GRV EA E L N+ G PD+ +Y
Sbjct: 513 SAACVMLKEMGSCGHGPWIKHTTLLVKELCDH---GRVIEACEFLDNMTQQGFLPDIVSY 569
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------E 169
+A + G + + AM++ + G +VV L++ L +
Sbjct: 570 SAAIGGLVNIQEVDHAMKIFKDLWSHGHCPDVVCFNVLIRGLCKVNRFTEAEDLFHELVK 629
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G P +T+N I C G + KA+ LF M + K+PS ++ L+
Sbjct: 630 RGLSPSVVTYNLFIDCWCKNGNVDKAMAHLFRMTKEDKVPSVVTYTTLV 678
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 16/120 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E D+F+ + K G + SV +N F G V++A
Sbjct: 613 KVNRFTEAEDLFHELVKRGLSPSVVTYN----------------LFIDCWCKNGNVDKAM 656
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
L + + P V TYT ++DGFCK R ++A+ L E + G N +T + L+ L
Sbjct: 657 AHLFRMTKEDKVPSVVTYTTLVDGFCKEERPDDAILLFKEMEKNGCPPNQITFMALIYGL 716
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 90 TAVKFFSNHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T F N LM GR+ +A + + + G PDV TY+ ++ GF + ++A EL
Sbjct: 193 TTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEA 252
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
I RG N VT LL L E G P +T+ ++ C VGK
Sbjct: 253 MISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGK 312
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIK 219
I +A+ + M G P +++ L+K
Sbjct: 313 IEQAVEVFDEMVSKGHDPDVVAYNCLLK 340
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A+E+ + + G +P+ TY ++ G CK + +EA EL + +ERG + VT L
Sbjct: 244 DQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTL 303
Query: 165 L----------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L Q +E+ GH P + +N +++ GK +A L +M
Sbjct: 304 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSREC 363
Query: 208 IPSRTSHDMLIKKLDQ 223
P SH+++I L +
Sbjct: 364 KPDTVSHNIMIDGLSK 379
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------------------NH 98
++F ++ G + +N LL L ++ D A + F
Sbjct: 248 ELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGF 307
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
VG++E+A E+ + + G PDV Y ++ GF + G+ EA +L + R +
Sbjct: 308 CNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDT 367
Query: 159 VT----------------LIQLLQRLEMGH--IPRTITFNNVIQALCGVGKIHKAL 196
V+ +++ +R+E H P +T+N++I LCG ++ +A+
Sbjct: 368 VSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAM 423
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRV+ A +L + G PD+ T++ +++ CK + EA E L +G+ + + T
Sbjct: 62 AGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFL-----QGMNRTIST 116
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY-EHGKIPSRTSHDMLI 218
++N+++ +LC K+H+A + M E +P S+ +LI
Sbjct: 117 -----------RASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILI 164
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 15/97 (15%)
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQ 184
+TA + G CK G+ +A E E + + + T ++VIQ
Sbjct: 13 AWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPS---------------SGTCHSVIQ 57
Query: 185 ALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LC G++ AL LL M + G P +H MLI +L
Sbjct: 58 ELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINEL 94
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 103 RVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
+V +A+ + V + PDV +Y+ ++DGFCK+ A +L + I+ NV T
Sbjct: 136 KVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTY 195
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L L EM G P IT++ +I K +A L M
Sbjct: 196 NAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMIS 255
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ +++ L+ L ++
Sbjct: 256 RGCRPNAVTYNCLLHGLCKE 275
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 20/116 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------SNHL 99
+++ +++F+ + G + V +N LL + A + F S+++
Sbjct: 313 IEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNI 372
Query: 100 MVG------RVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
M+ R+++A E+ ++ D G PD+ TY +++ G C R +EAM++ E
Sbjct: 373 MIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKE 428
>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
Length = 439
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 103 RVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
RV+EAY++L++ V+ KPD+ + I+ GFCK GR EA E+L + G N VT
Sbjct: 154 RVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTY 213
Query: 162 IQLL----------QRLEMGHI---------PRTITFNNVIQALCGVGKIHKALLLL 199
L+ + L++ + P +TFN +I LC ++ A L+
Sbjct: 214 TTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELV 270
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+E A+E++ +K L+ D +TYT +MDG CK GR++E + E + G
Sbjct: 262 RLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCN------- 314
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ ++ A C G + A ++ M G P T++ +L++ L
Sbjct: 315 -----------PSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGL 362
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 37/206 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
KA L E ++ +N + + ++ D N LL +L + D A+ F
Sbjct: 14 CKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIFRGIQCSPSVITL 73
Query: 97 NHLMVGRVE-----EAYEMLMNV-KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-- 148
N L+ G E +A E+ + KN L P+ TYTAI+ +CK+ R ++A +LL E
Sbjct: 74 NILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEESS 133
Query: 149 ----------AIERGVT--QNVVTLIQLLQRLEM----GHIPRTITFNNVIQALCGVGKI 192
++ RG Q V QLL L+M P + +N +I C G++
Sbjct: 134 CCSSDVIAITSVARGFCKAQRVDEAYQLL--LDMVEKKSAKPDIVAWNVIIHGFCKAGRV 191
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+A +L + G +P+ ++ LI
Sbjct: 192 REAYEMLETLVSMGCVPNAVTYTTLI 217
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 21/124 (16%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV----VTLIQLLQRLEMGHI--- 173
P+ +T++ ++ G CK GR EA+E N+ +ER N+ + L L Q +M
Sbjct: 1 PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60
Query: 174 -------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIK------ 219
P IT N +I C + + KAL L M ++ +P T++ +IK
Sbjct: 61 FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120
Query: 220 KLDQ 223
+LDQ
Sbjct: 121 RLDQ 124
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR E + + +G P V TYT ++ CK G +A +++ + +G+ +V T
Sbjct: 296 GRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTY 355
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+ L E G + P + ++ +++ C + +A+ M +
Sbjct: 356 TVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLD 415
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P + +L++ L ++
Sbjct: 416 RRLAPDPATCKLLVEMLCKR 435
>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
Length = 439
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 103 RVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
RV+EAY++L++ V+ KPD+ + I+ GFCK GR EA E+L + G N VT
Sbjct: 154 RVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTY 213
Query: 162 IQLL----------QRLEMGHI---------PRTITFNNVIQALCGVGKIHKALLLL 199
L+ + L++ + P +TFN +I LC ++ A L+
Sbjct: 214 TTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELV 270
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+E A+E++ +K L+ D +TYT +MDG CK GR++E + E + G
Sbjct: 262 RLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCN------- 314
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ ++ A C G + A ++ M G P T++ +L++ L
Sbjct: 315 -----------PSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGL 362
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 37/206 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
KA L E ++ +N + + ++ D N LL +L D A+ F
Sbjct: 14 CKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIFRGIQCSPSVITL 73
Query: 97 NHLMVGRVE-----EAYEMLMNV-KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-- 148
N L+ G E +A E+ + KN L P+ TYTAI+ +CK+ R ++A +LL E
Sbjct: 74 NILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEESS 133
Query: 149 ----------AIERGVT--QNVVTLIQLLQRLEM----GHIPRTITFNNVIQALCGVGKI 192
++ RG Q V QLL L+M P + +N +I C G++
Sbjct: 134 CCSSDVIAITSVARGFCKAQRVDEAYQLL--LDMVEKKSAKPDIVAWNVIIHGFCKAGRV 191
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
+A +L + G +P+ ++ LI
Sbjct: 192 REAYEMLETLVSMGCVPNAVTYTTLI 217
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 21/124 (16%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV----VTLIQLLQRLEMGHI--- 173
P+ +T++ ++ G CK GR EA+E N+ +ER N+ + L L Q M
Sbjct: 1 PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60
Query: 174 -------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIK------ 219
P IT N +I C + + KAL L M ++ +P T++ +IK
Sbjct: 61 FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120
Query: 220 KLDQ 223
+LDQ
Sbjct: 121 RLDQ 124
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR E + + +G P V TYT ++ CK G +A +++ + +G+ +V T
Sbjct: 296 GRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTY 355
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL+ L E G + P + ++ +++ C + +A+ M +
Sbjct: 356 TVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLD 415
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P + +L++ L ++
Sbjct: 416 RRLAPDPATCKLLVEMLCKR 435
>gi|242036455|ref|XP_002465622.1| hypothetical protein SORBIDRAFT_01g042420 [Sorghum bicolor]
gi|241919476|gb|EER92620.1| hypothetical protein SORBIDRAFT_01g042420 [Sorghum bicolor]
Length = 817
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-----SNH--------- 98
L E +IFN +K S +N L + + A S+H
Sbjct: 488 LDEAYEIFNQMKDLDLKPSEFTYNSLFYGICRRKDTSAAADLLREMRTSSHKPWIKNCTE 547
Query: 99 -----LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
GR+ EA + L + G PD+ TY+A M+G CK+G + A+ L + +
Sbjct: 548 MVQQLCFSGRITEALQFLDEMLKLGFLPDIVTYSAAMNGMCKIGETENALGLFRDISSKC 607
Query: 154 VTQNVVT---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+VV LI ++ L G P +T+N +I C GKI KA+
Sbjct: 608 YLPDVVAHNILINGFRKAGKFDEAQEIMEEMLSKGLFPSVVTYNLMIDIWCKSGKIDKAI 667
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
++ M + K P+ ++ L+ L
Sbjct: 668 SCVYKMIDEEKPPTVVTYTSLLDGL 692
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 85/185 (45%), Gaps = 37/185 (20%)
Query: 55 ERIDIFNSIKKD----GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
+++D+ ++ KD G + FNDL++ L + R++EAYE+
Sbjct: 451 KKLDLALALTKDMVGLGCKGKLLMFNDLILELCNSD----------------RLDEAYEI 494
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE---AIERGVTQNVVTLIQLL-- 165
+K+ LKP +TY ++ G C+ ++ A +LL E + + +N ++Q L
Sbjct: 495 FNQMKDLDLKPSEFTYNSLFYGICRRKDTSAAADLLREMRTSSHKPWIKNCTEMVQQLCF 554
Query: 166 ------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ L++G +P +T++ + +C +G+ AL L + +P +
Sbjct: 555 SGRITEALQFLDEMLKLGFLPDIVTYSAAMNGMCKIGETENALGLFRDISSKCYLPDVVA 614
Query: 214 HDMLI 218
H++LI
Sbjct: 615 HNILI 619
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F D ++ L L + T + +G E A + ++ + PDV + +++GF
Sbjct: 564 FLDEMLKLGFLPDIVTYSAAMNGMCKIGETENALGLFRDISSKCYLPDVVAHNILINGFR 623
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-RLEMGHI----------------PRTI 177
K G+ +EA E++ E + +G+ +VVT ++ + G I P +
Sbjct: 624 KAGKFDEAQEIMEEMLSKGLFPSVVTYNLMIDIWCKSGKIDKAISCVYKMIDEEKPPTVV 683
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ +++ LC G+ +A++L M E G P+ ++ I L
Sbjct: 684 TYTSLLDGLCNAGRPDEAIILWCKMSEKGCSPNEIAYTAFINGL 727
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +EA + + G P+ YTA ++G CK GR+ A+ E + ++ +
Sbjct: 695 AGRPDEAIILWCKMSEKGCSPNEIAYTAFINGLCKCGRTETAVNYYEEMKTKCFDLDIFS 754
Query: 161 LIQLLQRL 168
L+ L L
Sbjct: 755 LLNLTNSL 762
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+A E++ ++ G++P T T ++ GF + GR + AM++ ++ G + ++
Sbjct: 256 GKVEDAVELIGRMEALGMQPSEKTLTVLVHGFARQGRVDVAMDMFDKMASYGFSVDLAMY 315
Query: 162 IQLLQRL----EMG 171
L++ L EMG
Sbjct: 316 SVLIEGLCDGNEMG 329
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 22/141 (15%)
Query: 101 VGRVEEA----YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VT 155
GR E+A EM+ + + + D YT T++++ +C GR +A +L ER V
Sbjct: 184 AGRAEDAEARLQEMVASCGEESV--DRYTLTSLLNCYCNAGRPEDASAVLQRMSERAWVD 241
Query: 156 QNVVTL--------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
++V+T+ ++L+ R+E +G P T ++ G++ A+ +
Sbjct: 242 EHVLTMLAVAFSKWGKVEDAVELIGRMEALGMQPSEKTLTVLVHGFARQGRVDVAMDMFD 301
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M +G + +LI+ L
Sbjct: 302 KMASYGFSVDLAMYSVLIEGL 322
>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
Length = 348
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +KE +F + K G V +N L+ ++ E +TA F+
Sbjct: 159 KDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFN------------ 206
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ G+ PD+ +Y +++GFCK+ + ++AM L NE + + NVVT L+ L
Sbjct: 207 ----TMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGL 262
Query: 169 -----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ G P +T+N++I AL ++ KA+ L+ + G PS
Sbjct: 263 SKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSM 322
Query: 212 TSHDMLIKKL 221
++ +LI L
Sbjct: 323 YTYTILIDGL 332
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S +VG++++A ++ + + +KPD YT+ ++DGFCK + E +
Sbjct: 114 TYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMM 173
Query: 150 IERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKI 192
+++G+ +VVT L+ + G P ++N +I C + K+
Sbjct: 174 MKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKV 233
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
KA+ L M+ IP+ +++ LI L +
Sbjct: 234 DKAMNLFNEMHCKNIIPNVVTYNSLIDGLSK 264
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 17/161 (10%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F+D L+AL +Q + VG A ++L V ++ + Y ++ G C
Sbjct: 29 FHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMC 88
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMGHI-PRTI 177
K N+A +L +E + +G++ NVVT I L ++ + +I P
Sbjct: 89 KDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGY 148
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
TFN ++ C K+ + + +M + G IP +++ L+
Sbjct: 149 TFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLV 189
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+V++A ++ K+ G++P +YTYT ++DG CK GR +A + +
Sbjct: 302 QVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARNIFED 347
>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 834
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 18/135 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG +E+AYE+ +K G++P+V+ ++++GF + A L +EA+E G+T NVVT
Sbjct: 373 VGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT-NVVT 431
Query: 161 LIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LL+ L E+G + P +++NN+I C G + KA +L +
Sbjct: 432 YNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSIL 491
Query: 204 EHGKIPSRTSHDMLI 218
E G P+ ++ +LI
Sbjct: 492 ERGLKPNAVTYTLLI 506
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
+ E +++ + G S+ +N+L++ H G +++AY ML
Sbjct: 445 VNEACNLWEKMVSKGITPSLVSYNNLILG----------------HCKKGCMDKAYSMLK 488
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQNVV-------- 159
++ GLKP+ TYT ++DGF K G S A + + + + T N V
Sbjct: 489 SILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTG 548
Query: 160 ----TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
T +L ++ G + +IT+N++I G + ALL M E G P ++
Sbjct: 549 RVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYT 608
Query: 216 MLIKKL 221
LI L
Sbjct: 609 SLIDGL 614
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A + G+ PDV TYT+++DG CK + A+E+ ++ +G+ +VV
Sbjct: 583 GAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAY 642
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
L+ + L++G P T+ +N++I + + AL
Sbjct: 643 SALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAAL 694
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 16/137 (11%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ ++G V A ++ V G+ PDV ++ +++G KVG +A EL G+ N
Sbjct: 335 YCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPN 394
Query: 158 VVTLIQLLQR------LEMGH----------IPRTITFNNVIQALCGVGKIHKALLLLFL 201
V + LL+ LE + I +T+N +++ L +GK+++A L
Sbjct: 395 VFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEK 454
Query: 202 MYEHGKIPSRTSHDMLI 218
M G PS S++ LI
Sbjct: 455 MVSKGITPSLVSYNNLI 471
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
++ A EM ++K G+K DV Y+A++DGFCK+ A + E ++ G+T N V
Sbjct: 619 KIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYN 678
Query: 162 ---------------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ L Q + +P + + ++I L GK+ AL L M
Sbjct: 679 SMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSK 738
Query: 206 GKIPSRTSHDMLIKKL 221
+P + +LI L
Sbjct: 739 DIVPDIVMYTVLINGL 754
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A E+L ++ G P TYTA++ K G EA+ L +E + G+ NV+ L++
Sbjct: 274 ACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMK 333
Query: 167 R-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+E G +P + F+ +I VG + KA L M G P
Sbjct: 334 GYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQP 393
Query: 210 SRTSHDMLIKKLDQQ 224
+ + L++ +Q
Sbjct: 394 NVFIVNSLLEGFHEQ 408
>gi|414865543|tpg|DAA44100.1| TPA: hypothetical protein ZEAMMB73_135273 [Zea mays]
Length = 542
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 17/121 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
R++EA+ +L ++ G+ P V +YTAI+ G+CK GR EA LL+ I+ G +V++
Sbjct: 164 RLDEAWGVLDSMLEVGVCPTVRSYTAILHGYCKQGRVLEAERLLDTMIQVGCAPDVISYS 223
Query: 161 -LIQLLQRL-EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LIQ L R+ E G + P +T+N + ALC +G + +A + +M+
Sbjct: 224 VLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSALCRMGFLDEAFRQVDVMHSR 283
Query: 206 G 206
G
Sbjct: 284 G 284
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 27/152 (17%)
Query: 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGR------VEEAYEMLMNVKNDGLKPDVYTY 126
S F++ L L E + V F + M+ R + ++L+++ G+ PD++++
Sbjct: 303 SMFSEALTLLECSEELNWDVDVFCYNTMMSRLCDTGDIARVLKLLVDLVKKGIGPDMFSF 362
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186
T + C+ G+ A LL+ +G+ +VV FN +I L
Sbjct: 363 TIAIRSLCRAGKFKVAKCLLD---NKGIEYDVV------------------AFNTLIHGL 401
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
C G++H+ L M P+ + M+I
Sbjct: 402 CMAGELHEMLQTYMDMTSRNVFPNNFTIGMVI 433
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------QRL 168
PD TY ++ C R +EA +L+ +E GV V + +L +RL
Sbjct: 147 PDAATYNCLIWILCDSQRLDEAWGVLDSMLEVGVCPTVRSYTAILHGYCKQGRVLEAERL 206
Query: 169 -----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++G P I+++ +IQ LC VG+ K +L G P+ ++++ + L
Sbjct: 207 LDTMIQVGCAPDVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSAL 264
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG + +L + G P+ TY M C++G +EA ++ RGV + T
Sbjct: 232 VGEFGKVERILGESEAKGWTPNAVTYNIYMSALCRMGFLDEAFRQVDVMHSRGVYMTIET 291
Query: 161 ---LIQLLQRLEMGHIPRTI--------------TFNNVIQALCGVGKIHKALLLLFLMY 203
L L R M T+ +N ++ LC G I + L LL +
Sbjct: 292 VNILFDCLCRGSMFSEALTLLECSEELNWDVDVFCYNTMMSRLCDTGDIARVLKLLVDLV 351
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ G P S + I+ L
Sbjct: 352 KKGIGPDMFSFTIAIRSL 369
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +++ K+G D D+++ + + T H + ++EA ++ + + G
Sbjct: 714 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 773
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
P+V +Y +++G+C++ R ++AM LL + +G+ I T+T
Sbjct: 774 CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL------------------IADTVT 815
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +I LC VG++ A+ L M G+IP ++ +L+ L
Sbjct: 816 YNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 858
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA + + +G +P+V TY +++G CK + EA + +E I +G++ N+VT
Sbjct: 129 GKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTY 188
Query: 162 IQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E H+ P T N V+ ALC G + +A ++ +M
Sbjct: 189 NSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIH 248
Query: 205 HGKIPSRTSHDMLI 218
G P+ +++ L+
Sbjct: 249 RGVEPNVVTYNALM 262
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 95/234 (40%), Gaps = 37/234 (15%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E +D K P VD + K + E D+ + + G +V +N L+ + N
Sbjct: 210 EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRN 269
Query: 87 EQDTAVKFF-------------------SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
E D AVK F + + + V++A + + L P+ TY
Sbjct: 270 EVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYN 329
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEMG 171
++ G C VGR +A+ L +E + RG ++VT + LL+ +E
Sbjct: 330 TLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGS 389
Query: 172 HI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ P + ++ +C G++ A L + G P+ +++++I L +Q
Sbjct: 390 NWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQ 443
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ RV+ A+ L + G +PD T+T ++ G C G+ EA+ L ++ I G NVVT
Sbjct: 93 LNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVT 152
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALC 187
L+ L EM G P +T+N++I LC
Sbjct: 153 YGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLC 196
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 36/203 (17%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNH 98
D+ + + K G V + L+ + +E D AVK F + +
Sbjct: 729 DVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGY 788
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+ R+++A +L + GL D TY ++ G C VGR A+ L +E + G ++
Sbjct: 789 CQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDL 848
Query: 159 VTLIQLLQRLEMGHI-----------------PRTITFNNVIQALCGVGKIHKALLLLFL 201
VT LL L H + +N I +C G++ A L
Sbjct: 849 VTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSN 908
Query: 202 MYEHGKIPSRTSHDMLIKKLDQQ 224
+ G P +++++I L ++
Sbjct: 909 LSSKGLQPDVRTYNIMIHGLCKR 931
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ----RLEM- 170
N + P+V ++ ++D CK G A ++++ I+RGV +VVT L+ R EM
Sbjct: 701 NSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMD 760
Query: 171 ------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G +P ++N +I C + ++ KA+ LL M G I +++ LI
Sbjct: 761 EAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLI 820
Query: 219 KKL 221
L
Sbjct: 821 HGL 823
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +E+A ++ N+ + GL+P+V+TY ++ G CK G EA +L +E + G + N T
Sbjct: 409 GELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCT 467
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 93 KFFSNHLMVGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+ S++L R +++A +L ++ PD+ YT I+DG C+ G +A +L +
Sbjct: 364 RTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSS 423
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+G+ NV T+N +I LC G + +A L M ++G P+
Sbjct: 424 KGLQPNV------------------WTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPND 465
Query: 212 TSHDMLIK 219
+++++ +
Sbjct: 466 CTYNLITR 473
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----EMGHI 173
G+ PDVYT +++ FC + R A +L + ++ G +VVT L+ L G
Sbjct: 611 GIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGIS 670
Query: 174 PRTITFNNVIQALCGVGKIHKALLLL 199
P T+N++I ALC + + LL
Sbjct: 671 PDIFTYNSLIHALCNLCEWKHVTTLL 696
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 30/133 (22%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ A+ +L + G +PDV TY +M+G CK+ I +G++ ++ T
Sbjct: 631 RLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKM-------------ITKGISPDIFTYN 677
Query: 163 QLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L E H+ P + F+ V+ ALC G I A ++ +M +
Sbjct: 678 SLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKR 737
Query: 206 GKIPSRTSHDMLI 218
G P ++ L+
Sbjct: 738 GVEPDVVTYTALM 750
Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G +E A ++ N+ + GL+PDV TY ++ G CK G +EA +L + E + N
Sbjct: 897 GELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSN 952
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 21/138 (15%)
Query: 107 AYEMLMN----VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
Y LMN + G+ PD++TY +++ C + LLNE + + NVV
Sbjct: 653 TYGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFS 712
Query: 160 TLIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
T++ L + ++ G P +T+ ++ C ++ +A+ + M
Sbjct: 713 TVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHK 772
Query: 206 GKIPSRTSHDMLIKKLDQ 223
G +P+ S+++LI Q
Sbjct: 773 GCVPNVRSYNILINGYCQ 790
>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
Length = 496
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + G+ E+ + + ++ G++P++YTY ++ +C+ G A L +E
Sbjct: 75 TYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEM 134
Query: 150 IERGVTQNVV---TLIQLLQR----------LEM----GHIPRTITFNNVIQALCGVGKI 192
RG+ +NVV TLI L R L+M G P ITFN ++ GK+
Sbjct: 135 PVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKM 194
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
AL M G PS +++MLI
Sbjct: 195 SNALPFFNQMKAAGFQPSAVTYNMLI 220
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA + + GL P+ TYTA+M G+ G+ + L E GV N+ T
Sbjct: 52 GDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTY 111
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EM G + +++N +I LC GK+ A LL +M
Sbjct: 112 NCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRT 171
Query: 205 HGKIPSRTSHDMLI 218
G PS + ++L+
Sbjct: 172 EGTRPSIITFNLLV 185
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 37/192 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
KA + + FN +K G S +N L+ + A + S+ G
Sbjct: 190 KAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKV 249
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ +A+E+L ++ GL+ D +TY ++ C G +A +L
Sbjct: 250 TYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSM 309
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
E+GV P + ++ +I G +KAL L+ M + G IP
Sbjct: 310 GEKGVE------------------PSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIP 351
Query: 210 SRTSHDMLIKKL 221
+ S+ + I+ L
Sbjct: 352 NSASYGLTIRVL 363
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ + ++ +GT S+ FN L+ + A+ FF+ +K G
Sbjct: 165 LLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQ----------------MKAAG 208
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-GHIPRTI 177
+P TY ++ GFC+ A L++ ERG+ VT L+ H+ +
Sbjct: 209 FQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAF 268
Query: 178 ----------------TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ +++ALC G + A L M E G PS +DM+I
Sbjct: 269 EILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMI 325
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 18/139 (12%)
Query: 101 VGRVEEAYEMLM-NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G V A ML K+ DV TA+++G CK G EA + +E G+ N V
Sbjct: 15 AGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEV 74
Query: 160 TLIQLL----------------QRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L+ + + G + P T+N +I C G+ +A L M
Sbjct: 75 TYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEM 134
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G + + S++ LI L
Sbjct: 135 PVRGIVRNVVSYNTLIAGL 153
>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12775, mitochondrial-like [Glycine max]
Length = 750
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 84/197 (42%), Gaps = 24/197 (12%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
KA E +D+ + ++ G F ++ AL +E D A K + G
Sbjct: 460 KADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARK 519
Query: 103 -RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
R++EA +L + +KPDV TY +MDG+ V A + + GVT NV
Sbjct: 520 VRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCY 579
Query: 162 IQLLQRL--------------EMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM H P +T+ ++I ALC + +A+ LL M E
Sbjct: 580 TIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKE 639
Query: 205 HGKIPSRTSHDMLIKKL 221
HG P S+ +L+ L
Sbjct: 640 HGIQPDVYSYTILLDGL 656
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 34/176 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E + +F +K ++ + L+ AL NH +E A
Sbjct: 588 KKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALC------------KNH----HLERAI 631
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+L +K G++PDVY+YT ++DG CK GR A E+ + +G NV
Sbjct: 632 ALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQ--------- 682
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ +I LC G +AL L M + G +P + D++I L ++
Sbjct: 683 ---------VYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEK 729
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 37/188 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMAL--------------VMLN-----EQDTAVK 93
LKE + N +K N V FN L+ AL VM+ + T
Sbjct: 254 LKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNS 313
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + +V+ A + ++ G+ P+V TYT ++DG CK +EAM L E +
Sbjct: 314 LIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKN 373
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ IP +T+ ++I LC + +A+ L M E G P S
Sbjct: 374 M------------------IPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYS 415
Query: 214 HDMLIKKL 221
+ +L+ L
Sbjct: 416 YTILLDAL 423
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +L ++ +KPDV Y I+ CK +A +L +E I +G++ NVVT
Sbjct: 182 GETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTY 241
Query: 162 IQLLQRLE-MGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ MGH+ P TFN +I AL GK+ A ++L +M +
Sbjct: 242 NALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMK 301
Query: 205 HGKIPSRTSHDMLI 218
P +++ LI
Sbjct: 302 ACIKPDVVTYNSLI 315
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
+E A + +K G++PDVY+YT ++D CK GR A E + +G NV T
Sbjct: 393 HLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYN 452
Query: 161 -LIQLLQRLEM--------------GHIPRTITFNNVIQAL 186
+I L + ++ G +P ITF +I AL
Sbjct: 453 VMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICAL 493
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------RLEMG 171
G+ P+V TY A++ GFC +G EA LLNE + + +V T L+ +++
Sbjct: 233 GISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAA 292
Query: 172 HI-----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
I P +T+N++I + K+ A + + M + G P+ ++ +I
Sbjct: 293 KIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDG 352
Query: 221 LDQQ 224
L ++
Sbjct: 353 LCKE 356
Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 21/200 (10%)
Query: 43 RFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNH 98
R + K++ +K + ++N+I N + D DL +++ V +
Sbjct: 189 RLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGF 248
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
++G ++EA+ +L +K + PDV T+ ++D K G+ A +L ++ + +V
Sbjct: 249 CIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDV 308
Query: 159 VTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
VT L+ + G P T+ +I LC + +A+ L
Sbjct: 309 VTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEE 368
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M IP ++ LI L
Sbjct: 369 MKYKNMIPDIVTYTSLIDGL 388
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 18/82 (21%)
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
+++G PD+ T +M+ FC + A +L ++RG N +TL
Sbjct: 90 ESNGATPDLCTLNILMNCFCHLTHITFAFSVLANILKRGYHPNAITL------------- 136
Query: 175 RTITFNNVIQALCGVGKIHKAL 196
N +I+ LC G+I KAL
Sbjct: 137 -----NTLIKGLCFRGEIKKAL 153
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 34/191 (17%)
Query: 27 AESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
++ L+ K NP + +D K L E +F+ + + + ++ +N L+ M
Sbjct: 299 SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
+ D A + F+ LMV + D L PDV TY +++GFCK + + MEL
Sbjct: 359 DRLDEAQQIFT--LMVSK-------------DCL-PDVVTYNTLINGFCKAKKVVDGMEL 402
Query: 146 LNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCG 188
+ RG+ N VT L+ Q + G P +T+N ++ LC
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 462
Query: 189 VGKIHKALLLL 199
GK+ KA+++
Sbjct: 463 NGKLEKAMVVF 473
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 66/132 (50%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A + + N G++PDV+TY++++ C GR ++A LL++ +ER + NVVT
Sbjct: 256 VDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNS 315
Query: 164 LL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ + ++ P +T+N++I C ++ +A + LM
Sbjct: 316 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 375
Query: 207 KIPSRTSHDMLI 218
+P +++ LI
Sbjct: 376 CLPDVVTYNTLI 387
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E +D+F + K S+ +F+ LL A+ + + D + F E E+L
Sbjct: 46 LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISF----------GEKMEIL- 94
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------- 165
G+ ++YTY +++ C+ + + A+ +L + ++ G ++VTL LL
Sbjct: 95 -----GVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGN 149
Query: 166 ----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q +EMG+ P T+TF ++ L K +A+ L+ M G P ++
Sbjct: 150 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 209
Query: 216 MLIKKLDQQ 224
+I L ++
Sbjct: 210 AVINGLCKR 218
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + P+V T+ +++D F K G+ EA +L +E I+R + N+VT
Sbjct: 289 GRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 348
Query: 162 IQLLQ------RLEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL+ +P +T+N +I C K+ + L M
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + ++ LI Q
Sbjct: 409 RGLVGNTVTYTTLIHGFFQ 427
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ EA ++ + G +PD+ TY A+++G CK G + A+ LLN+ + + +VV
Sbjct: 185 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYS 244
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++ L EM G P T++++I LC G+ A LL M E
Sbjct: 245 TVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLER 304
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
P+ + + LI ++
Sbjct: 305 KINPNVVTFNSLIDAFAKE 323
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+ +++ ++ G+KPDV Y ++ GFCK G EA L
Sbjct: 499 GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL---------------- 542
Query: 162 IQLLQRLEMGHIPRTITFNNVIQA 185
++ E G +P + T+N +I+A
Sbjct: 543 --FIKMKEDGPLPDSGTYNTLIRA 564
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
R+ EA ++ + G +PD T+T ++ G + +++EA+ L+ + +G ++VT
Sbjct: 150 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 209
Query: 162 ---------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ LL ++E G I + ++ VI +LC + AL L M
Sbjct: 210 AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK 269
Query: 206 GKIPSRTSHDMLIKKL 221
G P ++ LI L
Sbjct: 270 GIRPDVFTYSSLISCL 285
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A +L ++ ++ DV Y+ ++D CK ++A+ L E +G+ +V T
Sbjct: 219 GEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278
Query: 162 IQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ LE P +TFN++I A GK+ +A L M +
Sbjct: 279 SSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQ 338
Query: 205 HGKIPSRTSHDMLI 218
P+ +++ LI
Sbjct: 339 RSIDPNIVTYNSLI 352
>gi|356555246|ref|XP_003545945.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Glycine max]
Length = 617
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 38/203 (18%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLL----------MALVMLNEQDTAVKFFSNHLMV------ 101
D+ S + +G+ +V+ F ++L MAL +L + + ++ +M
Sbjct: 279 DVIESYEAEGSLVTVNMFREVLKLCKEARLADMALWVLRKMEDTFNLHADTVMYNLVIRL 338
Query: 102 ----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G +E A ++ + ++ L PD+ TY AI++GF GRS EA +L G + N
Sbjct: 339 CCKKGDIETALKLTSEMSSNDLCPDLITYMAIVEGFSNAGRSEEAYSVLKVMRLHGCSPN 398
Query: 158 VVTL----------------IQLLQRLEMGHI--PRTITFNNVIQALCGVGKIHKALLLL 199
+V L ++LL +E G + P +T+ +VIQ+ C G+ +AL +L
Sbjct: 399 LVILSAILDGFCRSGSMERALELLDEMEKGGVCTPNVVTYTSVIQSFCKRGQWKEALDIL 458
Query: 200 FLMYEHGKIPSRTSHDMLIKKLD 222
M G + ++ +++ D
Sbjct: 459 DRMKAFGCHANHHNYQYILEHGD 481
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA + + +++ S+ K+G + +N ++ + G+ +EA
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV----------------HGYCSSGQPKEA 288
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
L + +DG++PDV TY ++MD CK GR EA ++ + +RG+ + T LLQ
Sbjct: 289 IGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQG 348
Query: 168 -------LEM----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+EM G P F+ +I A GK+ +A+L+ M + G P
Sbjct: 349 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPD 408
Query: 211 RTSHDMLIKKL 221
++ +I L
Sbjct: 409 TVTYGTVIGIL 419
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 103 RVEEAYEMLMNVKNDG--LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
R +EA E+L + +DG PDV +YT +++GF K G ++A +E ++RG+ NVVT
Sbjct: 177 RSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVT 236
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L + G +P T+N+++ C G+ +A+ L M+
Sbjct: 237 YSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMH 296
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 297 SDGVEPDVVTYNSLMDYL 314
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 21/149 (14%)
Query: 60 FNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
FNSI K+G DL++ + + + T + + G+++EA ++L ++
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------- 168
+ G+KPD TY +++G+CK+ R +A+ L E GV+ +++T +LQ L
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 601
Query: 169 ----------EMGHIPRTITFNNVIQALC 187
E G T+N ++ LC
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLC 630
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 21/208 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDT 90
L +N R +A++ D + LK I + ++ + T ++ + + LL +V
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373
Query: 91 AVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
F + G+V++A + ++ GL PD TY ++ CK GR +AM
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433
Query: 148 EAI-ERGVTQNVV--TLIQ--------------LLQRLEMGHIPRTITFNNVIQALCGVG 190
+ I ER N+V +LI +L+ L+ G TI FN++I + C G
Sbjct: 434 QMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEG 493
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ ++ L LM G P ++ LI
Sbjct: 494 RVIESEKLFDLMVRIGVKPDIITYSTLI 521
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++AY + + G+ P+V TY++I+ CK ++AME+L ++ GV N T
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L+++ G P +T+N+++ LC G+ +A + M +
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332
Query: 205 HGKIPSRTSHDMLIK 219
G P T++ L++
Sbjct: 333 RGLKPEITTYGTLLQ 347
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------- 98
+++ I + GT +S +N +L L N D A++ F N
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L VGR +EA ++ + +GL PDV TY+ + + + G E +L E G T N
Sbjct: 665 LKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724
Query: 159 VTLIQLLQR-LEMGHIPRTITF 179
L ++++ L+ G I R T+
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTY 746
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 19/107 (17%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR++ + L NV G + D +T ++ G C R+++AM++
Sbjct: 104 AGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI--------------- 148
Query: 161 LIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L+R+ ++G IP ++N +++ LC + +AL LL +M + G
Sbjct: 149 ---VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG 192
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 20/167 (11%)
Query: 78 LLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
LL ++V + + V + + + + R+E+A + +++ G+ PD+ TY I+ G
Sbjct: 536 LLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF 595
Query: 135 KVGRSNEAMELLNEAIERGV-----TQNVV-----------TLIQLLQRLEMGHIP-RTI 177
+ R+ A EL E G T N++ +++ Q L + + T
Sbjct: 596 QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR 655
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
TFN +I AL VG+ +A L + +G +P ++ ++ + L +Q
Sbjct: 656 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQ 702
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L +++ N ++K G V +N LL L GR +A
Sbjct: 188 KNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY----------------SGRWSDAA 231
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
ML ++ + PDV T+TA++D F K G +EA EL E I+ V
Sbjct: 232 RMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD------------- 278
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +T+N++I LC G+++ A LM G P+ +++ LI
Sbjct: 279 -----PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLI 323
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 21/141 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
RVE+ ++ + GL D +TY ++ G+C+ G+ N A ++ N ++ GV+ ++VT
Sbjct: 864 RVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYN 923
Query: 161 -----------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ LQ+ EM IT+N +IQ LC K+ +A L +
Sbjct: 924 ILLDCLCNNGKIEKALVMVEDLQKSEMD--VDIITYNIIIQGLCRTDKLKEAWCLFRSLT 981
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G P ++ +I L ++
Sbjct: 982 RKGVKPDAIAYITMISGLCRK 1002
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ S L + + + K G S+ F LL ++N R+ +A+
Sbjct: 118 RCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVN----------------RIGDAF 161
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+++ + G +P+V Y ++DG CK G N A+ELLNE ++G+ +VVT LL L
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+E ++ + +G D++TY ++ G+C+VG+ A+++ + R VT +++T
Sbjct: 332 VDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCI 391
Query: 164 LLQRLEM-GHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LL L + G I + +N +I LC K+ KA L + G
Sbjct: 392 LLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEG 451
Query: 207 KIPSRTSHDMLIKKL 221
P ++ ++I L
Sbjct: 452 VKPDARTYTIMILGL 466
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
S+ DF LL A L +T + +FS + E Y G+ D+Y++T ++
Sbjct: 70 SIVDFTRLLTATANLRRYETVI-YFSQKM------ELY---------GISHDLYSFTILI 113
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190
FC+ R + A+ +L + +++G+ P +TF +++ C V
Sbjct: 114 HCFCRCSRLSFALSVLGKM------------------MKLGYEPSIVTFGSLLHGFCLVN 155
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+I A L+ LM + G P+ ++ LI L
Sbjct: 156 RIGDAFSLVILMVKSGYEPNVVVYNTLIDGL 186
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 33/192 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L +++F ++K G +N L+ L SN GR +A
Sbjct: 721 KNRDLNNALEVFYCMEKKGIRADAVTYNTLISGL-------------SNS---GRWTDAA 764
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+L ++ + P+V +TA++D F K G EA L E I R V NV T L+
Sbjct: 765 RLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGF 824
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ G P +T+N +I C ++ + L M G +
Sbjct: 825 CIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDA 884
Query: 212 TSHDMLIKKLDQ 223
+++ LI Q
Sbjct: 885 FTYNTLIHGYCQ 896
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 18/122 (14%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M GR+ +A + + + G P+V TY ++ GFCK +E M+L G ++
Sbjct: 293 MHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADI- 351
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T+N +I C VGK+ AL + M P +H +L+
Sbjct: 352 -----------------FTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLH 394
Query: 220 KL 221
L
Sbjct: 395 GL 396
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+VE+A+E+ + +G+KPD TYT ++ G CK G EA EL+ E G+
Sbjct: 436 KVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
S+ DF +L + +N+ D + + H M +N G+ D+Y++T ++
Sbjct: 603 SIVDFTRVLTVIAKMNKFDIVIYLY--HKM--------------ENLGISHDLYSFTILI 646
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------QRLE-----------MGHI 173
FC+ R + A+ LL + ++ G ++VTL LL R + G +
Sbjct: 647 HCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFV 706
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P + +N VI LC ++ AL + + M + G +++ LI L
Sbjct: 707 PNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGL 754
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++E+A M+ +++ + D+ TY I+ G C+ + EA L +GV
Sbjct: 933 GKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVK------ 986
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
P I + +I LC G +A L M E G +PS +D
Sbjct: 987 ------------PDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 1028
>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 938
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EAY+ L + G+ PD ++ ++DGFCKVG A L++E E + + + +
Sbjct: 175 GLADEAYQFLSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALVDEISELNLITHTILI 234
Query: 162 IQL--LQRLE--------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
L +E G P +TF+++I LC GK+ + LLL M E G P+
Sbjct: 235 SSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYPNH 294
Query: 212 TSHDMLIKKL 221
++ L+ L
Sbjct: 295 VTYTTLVDSL 304
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++E + L +K+ G++PD +TY A++ G K+G E+M + E I G+
Sbjct: 762 GLIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTIYCEMIADGL------- 814
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P+T T+N +I VGK+ +A L+ M + P+ +++ +I L
Sbjct: 815 -----------VPKTSTYNVLISEFAKVGKMLQATELMKEMGKRRVSPNTSTYCTMISGL 863
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--- 161
E+ ++ML+ D P+V TYTA++DG CK G + A ++ + +E+ V NVVT
Sbjct: 349 EKTFKMLLE---DNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSM 405
Query: 162 -------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGK 191
+ L++++E +P T+ VI L GK
Sbjct: 406 INGYVKKGMLEEAVSLMRKMEDQNVVPNGFTYGTVIDGLFKAGK 449
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 21/99 (21%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG++ A +L +N + D TY ++ G C+ G ++EA + L+E ++ G+
Sbjct: 142 VGQLSFAISLL---RNRVISVDTVTYNTVISGLCEHGLADEAYQFLSEMVKIGI------ 192
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+P T++FN +I C VG +A L+
Sbjct: 193 ------------LPDTVSFNTLIDGFCKVGNFARAKALV 219
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V E +L ++ G+ P+ TYT ++D K A+ L ++ + RG+ ++V
Sbjct: 273 GKVMEGGLLLREMEEMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVY 332
Query: 162 IQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ LE +P +T+ ++ LC G + A ++ M E
Sbjct: 333 TVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLE 392
Query: 205 HGKIPSRTSHDMLI 218
P+ ++ +I
Sbjct: 393 KSVFPNVVTYSSMI 406
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G +A ++ +++ G PD T+ A+M G+ +A+ + +E G++ NV T
Sbjct: 691 LGMTRKAAMVMEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVAT 750
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ L EM G P T+N +I +G +++ + M
Sbjct: 751 YNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTIYCEMI 810
Query: 204 EHGKIPSRTSHDMLIKKL 221
G +P +++++LI +
Sbjct: 811 ADGLVPKTSTYNVLISEF 828
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S +G +E+ + + DGL P TY ++ F KVG+ +A EL+ E +R V+
Sbjct: 791 SGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVLISEFAKVGKMLQATELMKEMGKRRVS 850
Query: 156 QNVVTLIQLLQRL 168
N T ++ L
Sbjct: 851 PNTSTYCTMISGL 863
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 21/101 (20%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G+ PDV+ ++ CKVG+ + A+ LL +N V + T+
Sbjct: 124 GVSPDVFALNVLIHSLCKVGQLSFAISLL---------RNRVISVD------------TV 162
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+N VI LC G +A L M + G +P S + LI
Sbjct: 163 TYNTVISGLCEHGLADEAYQFLSEMVKIGILPDTVSFNTLI 203
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA ++ +++ + P+ +TY ++DG K G+ A E+ E GV +N L
Sbjct: 413 GMLEEAVSLMRKMEDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKEMRLIGVEENNYIL 472
Query: 162 IQLLQRLE 169
L+ L+
Sbjct: 473 DALVNHLK 480
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT---QNV 158
G+++EA ++L + + P++ TY +D K R++ + + G+ Q
Sbjct: 622 GKMKEAIDILDQMMFMEIHPNLTTYRIFLDMSSKHKRADAIFKTHETLLSYGIKLSRQVY 681
Query: 159 VTLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI L +L M G +P T+TFN ++ + KAL +M E
Sbjct: 682 NTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYSMMME 741
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ +I+ L
Sbjct: 742 AGISPNVATYNTIIRGL 758
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G +EE +++ ++ G +PDV TY A+++ FCK GR A E GV NVVT
Sbjct: 242 CGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVT 301
Query: 161 L----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++L ++ M G P +T+ ++ C G++ AL+L M
Sbjct: 302 FSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMV 361
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+ G + ++ +L+ L ++
Sbjct: 362 QQGVPLNVVTYTVLVDGLCKE 382
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 34/147 (23%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119
F +K++G +V F+ + A F N G V EA ++ ++ G+
Sbjct: 287 FAEMKREGVMANVVTFSTFVDA------------FCKN----GMVREAMKLFAQMRMKGM 330
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179
KP+ TYT ++DG CK GR ++A+ L NE +++GV NVV T+
Sbjct: 331 KPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVV------------------TY 372
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHG 206
++ LC GK+ +A + LM G
Sbjct: 373 TVLVDGLCKEGKVAEAEDVFRLMERAG 399
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV--------------- 92
KA + E I FN + G +V + L+ L D AV
Sbjct: 520 CKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDN 579
Query: 93 ----KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
HL G +++A+ + + N GL+ D+Y YT + GFC + EA E+L+E
Sbjct: 580 VVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSE 639
Query: 149 AIERGVTQNVVTLIQLLQRLE-MGHIPRTITFNNVIQAL 186
IE G+T + V L+ + + +G++ N +++L
Sbjct: 640 MIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEMESL 678
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 85 LNEQDTAVKFFSNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
L EQ A F+ ++M+ G + EA +L +K G PDV TY +++DG+ K G
Sbjct: 185 LFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGE 244
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQ------RLEM-----------GHIPRTITFNN 181
E +L+ E G +VVT L+ R+E G + +TF+
Sbjct: 245 LEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFST 304
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A C G + +A+ L M G P+ ++ L+
Sbjct: 305 FVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLV 341
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 37/169 (21%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-------------- 102
+ + + +K G VS + L+ L L + D A + G
Sbjct: 424 LSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDA 483
Query: 103 -----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ EA +L + + G +P++ TY A++DG CK G +EA+ N+ ++ G+ N
Sbjct: 484 CFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPN 543
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
V + ++ LC G++ KA+LLL M + G
Sbjct: 544 VQ------------------AYTALVDGLCKNGRLDKAVLLLDEMIDKG 574
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H + E A +L +K+ G++ DV Y A++ G C + + +EA LLN+ E G+
Sbjct: 413 GHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKP 472
Query: 157 NVVTL----------------IQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
N V I LLQ+ ++ G P +T+ ++ LC G I +A+
Sbjct: 473 NNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHF 532
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M + G P+ ++ L+ L
Sbjct: 533 NKMVDLGLEPNVQAYTALVDGL 554
>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
Length = 484
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA + + +++ S+ K+G + +N ++ + G+ +EA
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV----------------HGYCSSGQPKEA 288
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
L + +DG++PDV TY ++MD CK GR EA ++ + +RG+ + T LLQ
Sbjct: 289 IGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQG 348
Query: 168 -------LEM----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+EM G P F+ +I A GK+ +A+L+ M + G P
Sbjct: 349 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPD 408
Query: 211 RTSHDMLIKKL 221
++ +I L
Sbjct: 409 TVTYGTVIGIL 419
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 103 RVEEAYEMLMNVKNDG--LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
R +EA E+L + +DG PDV +YT +++GF K G ++A +E ++RG+ NVVT
Sbjct: 177 RSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVT 236
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L + G +P T+N+++ C G+ +A+ L M+
Sbjct: 237 YSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMH 296
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 297 SDGVEPDVVTYNSLMDYL 314
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++AY + + G+ P+V TY++I+ CK ++AME+L ++ GV N T
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L+++ G P +T+N+++ LC G+ +A + M +
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332
Query: 205 HGKIPSRTSHDMLIK 219
G P T++ L++
Sbjct: 333 RGLKPEITTYGTLLQ 347
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 22/168 (13%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDT 90
L +N R +A++ D + LK I + ++ + T ++ + + LL +V
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373
Query: 91 AVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
F + G+V++A + ++ GL PD TY ++ CK GR +AM
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433
Query: 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
+ I+ +RL P I +N++I +LC K KA
Sbjct: 434 QMID--------------ERLS----PGNIVYNSLIHSLCIFDKWDKA 463
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 19/106 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ + L NV G + D +T ++ G C R+++AM++
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI---------------- 148
Query: 162 IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L+R+ ++G IP ++N +++ LC + +AL LL +M + G
Sbjct: 149 --VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG 192
>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 451
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 36/199 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------------- 102
+FN + K + + L+ AL ++ + AV F + L G
Sbjct: 204 LFNKMFKRDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLC 263
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
++ EAY++L +K G PD+ Y ++ GFC+ GR+++A +++++ G N+V
Sbjct: 264 RKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLV 323
Query: 160 ---TLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
TL+ L L M G P + +++ C VG+I +A +L
Sbjct: 324 SYRTLVNGLCHLGMLDEATKYVEEMLSKGFSPHFAVIHALVKGFCNVGRIEEACGVLTKS 383
Query: 203 YEHGKIPSRTSHDMLIKKL 221
EH + P + + +++ ++
Sbjct: 384 LEHREAPHKDTWMIIVPQI 402
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 41/239 (17%)
Query: 8 SPTPFSVLL-VDSPSRSPSAAES-----LDLKENPRSLQAQRFVDKIKA--SPLKERIDI 59
+PT FS L+ + + P A + L P + R +D + + + L+ D+
Sbjct: 110 TPTLFSYLIKIYGEANLPDKALNTFYIMLQFNIKPLTKHLNRILDILVSHRNYLRPAFDL 169
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119
F K G +N +LM LN G + AY + + +
Sbjct: 170 FKDAHKHGVFPDTKSYN-ILMRAFCLN---------------GDISIAYTLFNKMFKRDV 213
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM--------- 170
PD+ +Y +M C+ + N A++L + + +G + T LL L
Sbjct: 214 VPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYK 273
Query: 171 --------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G P + +N VI C G+ H A ++ M +G +P+ S+ L+ L
Sbjct: 274 LLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGL 332
>gi|302767038|ref|XP_002966939.1| hypothetical protein SELMODRAFT_30641 [Selaginella moellendorffii]
gi|300164930|gb|EFJ31538.1| hypothetical protein SELMODRAFT_30641 [Selaginella moellendorffii]
Length = 506
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 33/179 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA LK I +F + + G + + +N L L S H G A
Sbjct: 262 LKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGL-------------SRH---GLWRFA 305
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT------- 160
Y++L + DG+ PD T+ ++++G + R + A+ L+ E + RG N +T
Sbjct: 306 YKLLPRMNQDGVLPDAVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKW 365
Query: 161 ---------LIQLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
++L QR L+ P T+N V+ ALC G++ +A L +M P
Sbjct: 366 LARNARADECVELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTP 424
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 85/208 (40%), Gaps = 36/208 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF--------------SNH 98
L+ I++ + ++G+ S+ D N L L D A++FF +
Sbjct: 92 LRATIELLKDMAENGSTLSIQDLNGCLRGLCKAGNVDGALEFFREAKNSFSLRASVSTYS 151
Query: 99 LMVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
++V R + YE+L +++ GL+ D TY+ I+ CK G ++A L+ I R
Sbjct: 152 ILVAALTAAKRNNDVYEILREMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLVERMISR 211
Query: 153 GV----------------TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
T V +++ + + H +T+N+++ ++ + +
Sbjct: 212 NCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAKHCTSVVTYNSLVLGFLKARRLKRGI 271
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ M G P ++++L + L +
Sbjct: 272 KVFTRMARTGPSPDIYTYNILFEGLSRH 299
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 36/181 (19%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-------------------R 103
+ +DG FN L+ LV N AV + G R
Sbjct: 312 MNQDGVLPDAVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNAR 371
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+E E+ + + L P+VYTY +M CK GR ++A L + T
Sbjct: 372 ADECVELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTP------- 424
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P IT+ +I LC ++ +A+LLL M + P + ++ +
Sbjct: 425 ----------PNAITYRALIHGLCLKMELERAVLLLDAMAKRDCAPDVACYGTIVAAFCK 474
Query: 224 Q 224
Q
Sbjct: 475 Q 475
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 23/130 (17%)
Query: 97 NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N L++G R++ ++ + G PD+YTY + +G + G A +LL +
Sbjct: 255 NSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQ 314
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
GV +P +TFN++I L + H+A+ L+ M G P+
Sbjct: 315 DGV------------------LPDAVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNA 356
Query: 212 TSHDMLIKKL 221
++ +L+K L
Sbjct: 357 ITYTILLKWL 366
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 17/83 (20%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
P+VYTY +M CK GR ++A L + T P IT+
Sbjct: 2 PNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDSTP-----------------PNAITYR 44
Query: 181 NVIQALCGVGKIHKALLLLFLMY 203
+I LC ++ +A+LLL +Y
Sbjct: 45 ALIHGLCLKMELERAVLLLDAVY 67
>gi|255661036|gb|ACU25687.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 376
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 33/188 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + L + + + N + K G + +N L+ V ++ D A++ F +G ++
Sbjct: 141 KEAKLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASKFDDAIRVFRE---MGSMD--- 194
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
P + TY +++G CK R +EA +L+ E +E+G V+T L++ L
Sbjct: 195 ----------CSPTIVTYHTLINGLCKGERFSEAYDLVKEMLEKGWKPCVITYSLLMKGL 244
Query: 169 EMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
GH P N +I LC VGK AL+L F M P+
Sbjct: 245 CQGHKVEMALQLWNQVLSKGFKPDVQMHNILIHGLCSVGKTQHALMLYFDMNHWNCAPNL 304
Query: 212 TSHDMLIK 219
+H+ L++
Sbjct: 305 VTHNTLME 312
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 37/212 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
++ +K+ D++ + + G+ +V FN ++ L E D A+ + G VE++
Sbjct: 36 LRVGRIKDCFDLWELMGRKGSQ-NVVSFNIMMRGLFDNGEVDKAISIWELMKKSGFVEDS 94
Query: 108 --YEMLMN-----------------VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
Y ++++ + G D + Y+A+++G CK + ++A+ +LN
Sbjct: 95 ITYGIIIDGFCKNGYINKSLHVLEIAEGKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNG 154
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGK 191
I+ G N L+ EMG + P +T++ +I LC +
Sbjct: 155 MIKSGCKPNAHVYNTLINGFVGASKFDDAIRVFREMGSMDCSPTIVTYHTLINGLCKGER 214
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
+A L+ M E G P ++ +L+K L Q
Sbjct: 215 FSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQ 246
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + M + + PD Y A++ GF +VGR + +L E + R +QNVV+
Sbjct: 4 GDIDGAKRVYMEMAESKVSPDAVVYNAMLIGFLRVGRIKDCFDLW-ELMGRKGSQNVVSF 62
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++ L + G + +IT+ +I C G I+K+L +L +
Sbjct: 63 NIMMRGLFDNGEVDKAISIWELMKKSGFVEDSITYGIIIDGFCKNGYINKSLHVLEIAEG 122
Query: 205 HGKIPSRTSHDMLIKKLDQQP 225
G + ++ +I L ++
Sbjct: 123 KGGVLDAFAYSAMINGLCKEA 143
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN------HL-- 99
KA +++ +F IK G V ++ L+ LV K F HL
Sbjct: 562 FKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDT 621
Query: 100 -----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G+V +AY++L +K GL+P V TY +++DG K+ R +EA L E
Sbjct: 622 RAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEE 681
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
A + V NVV L+ + ++ G P T T+N ++ AL +
Sbjct: 682 AKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEE 741
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +AL+ M P+ ++ +++ L
Sbjct: 742 IDEALVCFQNMKNLKCPPNEVTYSIMVNGL 771
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+ R++EAY + K+ + +V Y++++DGF KVGR +EA +L E +++G+T N T
Sbjct: 669 IDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYT 728
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LL L + P +T++ ++ LC V K +KA + M
Sbjct: 729 WNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQ 788
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ G P+ ++ +I L
Sbjct: 789 KQGLKPNTITYTTMISGL 806
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE------------ 148
VG+V+ A++ +K+ GL PD T+T+++ CK R +EA+EL E
Sbjct: 285 VGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYA 344
Query: 149 ----AIERGVTQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ G LL+R + G IP I +N ++ L GK+ +AL +L M
Sbjct: 345 YNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM- 403
Query: 204 EHGKIPSRTSHDMLIKKL 221
+ P+ TS+++LI L
Sbjct: 404 KMDAAPNLTSYNILIDML 421
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD---------------TAV 92
+K+ L+E + +++K + S + L+ AL +E D V
Sbjct: 178 VKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTV 237
Query: 93 KFFSNHLMV----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
F+ + V GRV+ A +L +K++ D+ Y +D F KVG+ + A + +E
Sbjct: 238 HLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHE 297
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMGH-IPRTITFNNVIQALCGVGK 191
+G+ + VT ++L + L+ +P +N +I VGK
Sbjct: 298 LKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGK 357
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
++A LL G IPS +++ ++ L ++
Sbjct: 358 FNEAYSLLERQKRKGCIPSVIAYNCILTCLGRK 390
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E I + + G + +N LL ALV E D A+ F N
Sbjct: 703 KVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQN----------- 751
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+KN P+ TY+ +++G CKV + N+A E ++G+
Sbjct: 752 -----MKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLK------------- 793
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P TIT+ +I L VG + +A L G IP ++ +I+ L
Sbjct: 794 -----PNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGL 841
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
N GR E+ +++ + + G PD+ MD K G + L E +G+T
Sbjct: 525 NFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTP 584
Query: 157 NVVTLIQLLQRLEMGHIPR-----------------TITFNNVIQALCGVGKIHKALLLL 199
+V + L+ L G + T +N VI C GK++KA LL
Sbjct: 585 DVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLL 644
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M G P+ ++ +I L
Sbjct: 645 EEMKTKGLQPTVVTYGSVIDGL 666
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V +AY + + + G P+ YT+++ F K GR + ++ E + RG +
Sbjct: 495 GKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCS------ 548
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P + NN + + G+I K L + G P S+ +LI L
Sbjct: 549 ------------PDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGL 596
>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
Length = 1039
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G E A ++ + N+G K D +TY+ ++ CK + NEA+ +L++ RGV N+V
Sbjct: 612 AGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVA 671
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ + EM GH P IT+ I + C +G+I +A L+ M
Sbjct: 672 YTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEME 731
Query: 204 EHGKIPSRTSHDMLI 218
+G P ++++ I
Sbjct: 732 RNGVAPDVVTYNVFI 746
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA + L + +GL P+V YT+I+D +CKVG+ A+E+ G N T
Sbjct: 442 RLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYS 501
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L E G P IT+ +IQ C + A L +M ++
Sbjct: 502 SLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQN 561
Query: 206 GKIPSRTSHDMLIKKL 221
G P ++++L L
Sbjct: 562 GLTPDEQAYNVLTDAL 577
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EA +L+ + DG P+++TYT ++ G CK GR ++A LL+E RGV
Sbjct: 269 VREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGV--------- 319
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P T+N +I C G++ AL + LM +G P +++ LI L
Sbjct: 320 ---------VPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGL 368
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 40/218 (18%)
Query: 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK---F 94
S+ Q + +K + + I I IK+ + + S FN+++ + + +A+ F
Sbjct: 655 SILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISS----GHKPSAITYTVF 710
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
S++ +GR+EEA ++ ++ +G+ PDV TY ++G +G + A L I+
Sbjct: 711 ISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASC 770
Query: 155 TQNVV--------------------------------TLIQLLQRL-EMGHIPRTITFNN 181
N T+ QLL+R+ + G P +T+++
Sbjct: 771 EPNYWTYWLLLKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSS 830
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+I C ++ +A +LL M P+ + MLIK
Sbjct: 831 IIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIK 868
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ +A +L + G+ P V+TY A++DG+CK GR +A+ + G + T
Sbjct: 302 GRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTY 361
Query: 162 IQLLQRL----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
L+ L G P ITF N+I C KI AL
Sbjct: 362 NSLIHGLCGGKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDAL 412
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 53/174 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR+++A + ++ +G PD +TY +++ G C G+ +EA ELLN AI RG + V+T
Sbjct: 337 GRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCG-GKPDEAEELLNGAIARGFSPTVITF 395
Query: 161 -------------------------------------LIQLL---QRLEM---------- 170
LI +L RL+
Sbjct: 396 TNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFA 455
Query: 171 -GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
G P + + ++I A C VGK+ AL + L G P+ ++ LI L Q
Sbjct: 456 NGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQ 509
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 39/208 (18%)
Query: 50 ASPLKERIDIFNSIKKDGTN---WSVSDFNDLLMALVMLNEQDTAVKFFS---------- 96
A ++E +D +I++ G S +N L +L+ + + K +S
Sbjct: 123 AEDMREAVDAIQAIRRAGGKRLALSPKCYNLALRSLLRFDMTEHMGKLYSQLVQEGLLPD 182
Query: 97 ----NHLMVGRVEE-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL- 146
N +++ +E A+ ++ G++ D YT A++ G+C+ G +A LL
Sbjct: 183 TVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWLLM 242
Query: 147 ---------NEAIERGVTQNVV-------TLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190
NE + Q + L+ LL L+ G P T+ +I+ LC G
Sbjct: 243 MMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEG 302
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+IH A +LL M G +PS +++ +I
Sbjct: 303 RIHDARVLLDEMPRRGVVPSVWTYNAMI 330
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN--VVT 160
+++ +++L + GL P TY++I+ GFCK R EA LL+ + + ++ N + T
Sbjct: 805 KLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYT 864
Query: 161 L-------IQLLQR--------LEMGHIPRTITFNNVIQALCGVGKIHKALL----LLFL 201
+ I+L ++ +E G P +++ +I LC G KA LL +
Sbjct: 865 MLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGDYDKAKALFCDLLEM 924
Query: 202 MYEHGKIPSRTSHDMLIK 219
Y H ++ + +D L+K
Sbjct: 925 DYNHNEVAWKILNDGLLK 942
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 36/194 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
I+ L + + + +++DG V + L+ +E D A + F
Sbjct: 508 IQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLF------------ 555
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
EM+ + +GL PD Y + D CK GR+ EA L +++GV VT L+
Sbjct: 556 -EMM---EQNGLTPDEQAYNVLTDALCKSGRAEEAYSFL---VKKGVVLTKVTYTSLVDG 608
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ + G + T++ ++QALC K+++AL +L M G +
Sbjct: 609 FSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGN 668
Query: 211 RTSHDMLIKKLDQQ 224
++ ++I ++ ++
Sbjct: 669 IVAYTIIISEMIKE 682
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--- 160
V EA + +++ G+ P+ TYT ++D +CK GR +A L N I+RG+ V T
Sbjct: 314 VNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNC 373
Query: 161 LIQLLQRLEMGHIPRT--------------ITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LI L R R+ +T+N +I +LC G+ KA+ LL M+E G
Sbjct: 374 LIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKG 433
Query: 207 KIPSRTSHDMLI 218
PS +++ L+
Sbjct: 434 LNPSHVTYNTLM 445
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 36/205 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K + E I++FN ++K G + + + L+ A + A ++
Sbjct: 310 KNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVS 369
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ G V+ A ++ + + L DV TY ++D CK G S +A++LL+E
Sbjct: 370 TYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEM 429
Query: 150 IERGVTQNVVTLIQLLQ----------------RLEM-GHIPRTITFNNVIQALCGVGKI 192
E+G+ + VT L+ R+E G +T N +I+ C G++
Sbjct: 430 FEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRL 489
Query: 193 HKALLLLFLMYEHGKIPSRTSHDML 217
A LL M E G +P+RT+++++
Sbjct: 490 EDANGLLNEMLERGLVPNRTTYEII 514
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++ +A +L + G+ P+ TY ++DGFCK + AM + E +G+ NVV
Sbjct: 206 IGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVV- 264
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+N +I LC GK+ +A+ L M P+ +H++LI
Sbjct: 265 -----------------TYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLI 305
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 24/120 (20%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E Y ++ K ++ +V ++ +++G CKVG+ N A +++ + GV+ NV
Sbjct: 137 GDMEFVYREMIKRK---IELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNV--- 190
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCG---VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
IT+N +I C +GK++KA +L M G P+ ++++LI
Sbjct: 191 ---------------ITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILI 235
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-IQLLQRLEMGHIP 174
G + +V T+ ++ GFC GR +A LLNE +ERG+ N T I + +E G +P
Sbjct: 468 GKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFVP 525
>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
Length = 1184
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 40/222 (18%)
Query: 33 KENPRSLQAQRFVDKIK----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
K NP ++ + FV ++ A+ +K+ +++ + + K G F LL AL
Sbjct: 159 KTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSV 218
Query: 89 DTAVKFFSN------------------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
A K F + G++ EA E+L+ +K GL+PD+ +T ++
Sbjct: 219 KEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLL 278
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNV---VTLIQLLQRLE---------------MGH 172
G+ G+ +A +L+N+ +RG NV LIQ L R E G
Sbjct: 279 SGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGC 338
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+T+ +I C G I K +L M + G +PS+ ++
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTY 380
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 90/192 (46%), Gaps = 32/192 (16%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A + + D+ N ++K G +V+ + L+ AL + R++EA
Sbjct: 284 AGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEK---------------RMDEAMR 328
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---- 165
+ + ++ G + D+ TYTA++ GFCK G ++ +L++ ++GV + VT +Q++
Sbjct: 329 VFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHE 388
Query: 166 ------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
+ LE+ G P + +N VI+ C +G++ +A+ L M +G P
Sbjct: 389 KKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVD 448
Query: 213 SHDMLIKKLDQQ 224
+ ++I Q
Sbjct: 449 TFVIMINGFTSQ 460
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 16/134 (11%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE------RGVTQN 157
V++A E+L + GL+PD Y + ++D CK G EA ++ + E R T
Sbjct: 183 VKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSL 242
Query: 158 VVTLIQ----------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ + L+Q E G P + F N++ GK+ A L+ M + G
Sbjct: 243 LYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGF 302
Query: 208 IPSRTSHDMLIKKL 221
P+ + +LI+ L
Sbjct: 303 EPNVNCYTVLIQAL 316
>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
salviifolia]
Length = 431
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+F++I K G S +N L+ + ++ +G ++E + + + G
Sbjct: 164 VFDAITKWGLRPSAVSYNTLM----------------NGYIRLGVLDEGFRLKSAMLASG 207
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
++PDVYTY+ +++G K + ++A EL +E + +G+ N VT L+
Sbjct: 208 VQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267
Query: 166 ----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q L +P IT+N +I LC G + +A L+ M G P + ++ LI
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLI 324
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A++++ ++ GLKPD TYT ++DG CK G + A E I+ + + V
Sbjct: 296 GDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVY 355
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + L +G P T T+ +I C G + K LL M
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 415
Query: 205 HGKIPSRTSHDMLI 218
G +PS ++++L+
Sbjct: 416 DGHVPSVVTYNVLM 429
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 94 FFSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+F N LM G + A + + GL+P +Y +M+G+ ++G +E L +
Sbjct: 143 YFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSA 202
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGK 191
+ GV +V T L+ L EM G +P +TF +I C G+
Sbjct: 203 MLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGR 262
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A+ + M +P +++ LI L ++
Sbjct: 263 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 295
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L E I N + G + FN L++AL N R+EEA
Sbjct: 349 KNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQN----------------RLEEAL 392
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------- 161
++ + GL PDVYT+ +++ CKVG + + L E G T + VT
Sbjct: 393 DLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHL 452
Query: 162 ---------IQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ LL +E PR T+T+N +I ALC +I +A + M G S
Sbjct: 453 CSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSA 512
Query: 212 TSHDMLIKKL 221
+ + LI L
Sbjct: 513 VTFNTLIDGL 522
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF---SNH------ 98
++ S LK ++N + G V N L+ AL ++ TAV S+H
Sbjct: 173 VEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDE 232
Query: 99 -----LMVGRVEE-AYEMLMNVK----NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
LM G +EE + E + VK G P T +++G+CK+GR +A+ + +
Sbjct: 233 TTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQ 292
Query: 149 AIERGVTQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGK 191
I G + VT + L+ GH P T+N VI L G+
Sbjct: 293 EIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGE 352
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ +A ++ M + G +P T+ + LI L Q
Sbjct: 353 LDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQ 385
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 39/225 (17%)
Query: 36 PRS-LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
PRS + +D + K ++E ++F+ + G + S FN L+ L D A +
Sbjct: 474 PRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATE 533
Query: 94 F-------------------FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
+++ G +++A ++L + +G + DV TY +++G C
Sbjct: 534 LIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLC 593
Query: 135 KVGRSNEAMELLNEAIERGV----------------TQNVVTLIQLLQRL-EMGHIPRTI 177
K GR+ A++LL +G+ N+ + L + + E+G P +
Sbjct: 594 KAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDAL 653
Query: 178 TFNNVIQALC-GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+ V ++LC G G I +A L M G +P +S ML + L
Sbjct: 654 TYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGL 698
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L +D+ N ++ +G S +N ++ AL R+EEA E+
Sbjct: 458 LGNALDLLNEMESNGCPRSTVTYNTIIDALCKKM----------------RIEEAEEVFD 501
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-QRLEMG 171
+ G+ T+ ++DG CK R ++A EL+ + ++ G+ N +T +L + G
Sbjct: 502 QMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQG 561
Query: 172 HIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
+I + +T+ +I LC G+ AL LL M G P+ +++
Sbjct: 562 NIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYN 621
Query: 216 MLIKKL 221
+I+ L
Sbjct: 622 PVIQSL 627
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 24/163 (14%)
Query: 63 IKKDGTNWSVSDFNDLLMALVMLNEQDTAV---KFFSNHLMVGRVEEAYEMLMN-VKND- 117
++K GT + L+ + Q AV F ++ + R ++A ++++N + ND
Sbjct: 96 VQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDT 155
Query: 118 -GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G++ D + +++ + + + NE RG+ +VVTL
Sbjct: 156 FGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTL--------------- 200
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
N +I+ALC ++ A+L+L M HG P T+ L++
Sbjct: 201 ---NTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQ 240
>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
[Vitis vinifera]
Length = 2037
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA +++ N+ DG+ PDV TY+++++GFC+VG A E++ G+ N +
Sbjct: 1208 GMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIY 1267
Query: 162 IQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ GH T N ++ +LC GK+ +A L M
Sbjct: 1268 STLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSR 1327
Query: 205 HGKIPSRTSHDMLI 218
G +P+ ++D +I
Sbjct: 1328 IGLVPNSITYDCII 1341
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++A +L ++ +G P + TY +++ +CK GR A+EL++ I +G+ +V T
Sbjct: 998 GNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTY 1057
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+ L H P +T+N +I GKI A + M +
Sbjct: 1058 NVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSK 1117
Query: 205 HGKIPSRTSHDMLI 218
P+ +++ LI
Sbjct: 1118 FDLSPNCVTYNALI 1131
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVT 160
G + EA + + + + PD YTY++++ G C+ G++ A+ L A+ RG + N V
Sbjct: 1418 GNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVM 1477
Query: 161 LIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L EM G P T+ FN +I + G++ KA M
Sbjct: 1478 YTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMR 1537
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G P+ ++++L+ ++
Sbjct: 1538 WWGVCPNLATYNILLHGFSKK 1558
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 25/138 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ A ++ + L P+ TY A++ G C VG EA+ LL+ G+ N VT
Sbjct: 1103 GKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTY 1162
Query: 162 ----------------IQLLQRLE-----MGHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+LL+R+ +GHI T+ +I LC G + +A+ L+
Sbjct: 1163 GTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTV----LIDGLCKNGMLDEAVQLVG 1218
Query: 201 LMYEHGKIPSRTSHDMLI 218
MY+ G P ++ LI
Sbjct: 1219 NMYKDGVNPDVITYSSLI 1236
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+L G ++ A E V G KP VYT I+ K R+ L E ++G+ N
Sbjct: 924 YLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPN 983
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
V TFN +I LC G + KA LL M E+G +P+ +++ L
Sbjct: 984 VG------------------TFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTL 1025
Query: 218 I 218
+
Sbjct: 1026 L 1026
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 18/131 (13%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F N R +AY +L ++ + + P+ TY +++GF K G+ A ++ NE
Sbjct: 1060 FIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNE----- 1114
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ + ++ P +T+N +I C VG +AL LL M G + +
Sbjct: 1115 -----------MSKFDLS--PNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVT 1161
Query: 214 HDMLIKKLDQQ 224
+ L+ L +
Sbjct: 1162 YGTLLNGLCKH 1172
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R E + + + + G+ P+V T+ +++G C G +A LL + E G +VT
Sbjct: 964 RTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYN 1023
Query: 163 QLLQ-RLEMGHIPRTI----------------TFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL + G I T+N I LC + KA LLL M +
Sbjct: 1024 TLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKE 1083
Query: 206 GKIPSRTSHDMLI 218
P+ +++ LI
Sbjct: 1084 MISPNEVTYNTLI 1096
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 24/127 (18%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G A+ ++ G P +TY +++ G CK G EA + LN
Sbjct: 1347 IGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLN------------- 1393
Query: 161 LIQLLQRLEMGHIPR---TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+ +IP ++ +N ++ C G +H+A+ L M ++ +P ++ L
Sbjct: 1394 --------RLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSL 1445
Query: 218 IKKLDQQ 224
+ L ++
Sbjct: 1446 LTGLCRK 1452
Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 18/97 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ +A++++ + G+ PD TY I +G K E+ +L+E +E GV
Sbjct: 1629 GKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGV------- 1681
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
IP+ + +I +C VG I A L
Sbjct: 1682 -----------IPKHAQYITLINGMCRVGDIQGAFKL 1707
>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
Length = 866
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 24/196 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGT-------NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM 100
+ S L +DI + + ++G+ N +S +D ++ L +Q T S
Sbjct: 467 CRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCK 526
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR +EA + L+ + + PD Y + G+CK G+++ A+++L + ++G + T
Sbjct: 527 EGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRT 586
Query: 161 LIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L++ E H P +T+N++I++ C G ++KA+ LL M
Sbjct: 587 YNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEML 646
Query: 204 EHGKIPSRTSHDMLIK 219
++ +P+ TS D+LIK
Sbjct: 647 QNELVPNITSFDLLIK 662
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
D++ L ++ ++ S + GRV EA E+L + ++G++P+ YTY I+ G CK
Sbjct: 305 DIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKE 364
Query: 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
G++ +A + N I GV P +T+ +++ A C G I A
Sbjct: 365 GKAFDARRVEN-FIRSGVMS-----------------PDVVTYTSLLHAYCSKGNIAAAN 406
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
+L M + G P+ ++++L++ L
Sbjct: 407 RILDEMAQKGCAPNSFTYNVLLQSL 431
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 26/145 (17%)
Query: 80 MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
M LV+ N T V F G VEEA ++ ++ GL P+V T+ A + CK GR
Sbjct: 205 MNLVVCN---TVVAGFCKE---GLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRV 258
Query: 140 NEAMEL---LNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+A + + E + G+ + P +TF+ ++ C G + +A
Sbjct: 259 LDAYRIFQDMQEDWQHGLPR-----------------PDQVTFDVMLSGFCDAGFVDEAR 301
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
+L+ +M G + S++ + L
Sbjct: 302 VLVDIMRCGGFLRRVESYNRWLSGL 326
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
I + + K+G + + + + VM + T + G + A +L + G
Sbjct: 357 IVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKG 416
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
P+ +TY ++ + GR+ EA LL E+G + + T
Sbjct: 417 CAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLD------------------TAG 458
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHG 206
N +I LC ++ A+ ++ M+E G
Sbjct: 459 CNIIIDGLCRNSRLDVAMDIVDGMWEEG 486
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 47/195 (24%)
Query: 48 IKASPLKERIDIFNSIKKD----GTNWSVSDFNDLLMALVMLNEQDTAVKFFS------- 96
I A+ + R+D+ ++ KD G V N LL AL + A + F
Sbjct: 117 ILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLLLQALCDAGRMELAQRVFDAMPARNE 176
Query: 97 --------NHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLN 147
+ GR +A ++L DG+ ++ ++ GFCK G EA L
Sbjct: 177 FSFGILARGYCRAGRSIDALKVL-----DGMPSMNLVVCNTVVAGFCKEGLVEEAERL-- 229
Query: 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM---YE 204
+ER Q G P +TFN I ALC G++ A + M ++
Sbjct: 230 --VERMRVQ--------------GLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQ 273
Query: 205 HG-KIPSRTSHDMLI 218
HG P + + D+++
Sbjct: 274 HGLPRPDQVTFDVML 288
>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
Length = 332
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV++A ML ++ + G PDV T++ +++G+CK R + ME+ E RG+ N VT
Sbjct: 175 RVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYT 234
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L+ + + G P ITF+ ++ LC ++ KA +L
Sbjct: 235 TLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAIL 288
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL- 165
A + + G+ P+V TY ++D FC GR ++A +LL IE+ + ++VT L+
Sbjct: 74 AQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALIN 133
Query: 166 ----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ L P TIT+N++I C ++ A +L M G P
Sbjct: 134 AFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSP 193
Query: 210 SRTSHDMLI 218
+ LI
Sbjct: 194 DVVTFSTLI 202
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V EA E+ + + P TY +++DGFCK R ++A +L+ +G + +VVT
Sbjct: 140 KVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFS 199
Query: 163 QLLQR--------------LEM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ EM G + T+T+ +I C VG + A LL M
Sbjct: 200 TLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISC 259
Query: 206 GKIPSR-TSHDML 217
G P T H ML
Sbjct: 260 GVAPDYITFHCML 272
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 27/128 (21%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG----------VTQNVVTLIQLLQR 167
G +P+V T+ +M+ C+ GR EA+ L++ +E G + +VV ++ R
Sbjct: 5 GCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDR 64
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
L E G P +T+N +I + C G+ A LL M E P
Sbjct: 65 LCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPD 124
Query: 211 RTSHDMLI 218
+ LI
Sbjct: 125 IVTFSALI 132
>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 755
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 88/195 (45%), Gaps = 37/195 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV---- 104
K L + ++ + ++ G + V+ +N L+ ++V+ D A + S + G V
Sbjct: 557 KTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSAL 616
Query: 105 ---------------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+EA+ + + + +KPDV T +A++ G+C+ R +A+ L ++
Sbjct: 617 AFTDVIGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDKL 676
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
++ G+ P + +N +I C VG I KA L+ LM + G +P
Sbjct: 677 LDAGLK------------------PDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLP 718
Query: 210 SRTSHDMLIKKLDQQ 224
+ ++H L+ L+ +
Sbjct: 719 NESTHHALVVGLEGK 733
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 40/215 (18%)
Query: 44 FVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK--------- 93
F+DK+ KA L+E + +K G + + ++ + + + A+K
Sbjct: 379 FIDKLCKAGFLREATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRP 438
Query: 94 -------FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
F SN G + A + + GL PD Y YT ++DG+C +GR+++A +
Sbjct: 439 NIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTDKAFQFF 498
Query: 147 NEAIERGVTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGV 189
++ G +++T L+ + G I P +T+NN++ G
Sbjct: 499 GALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMY---GY 555
Query: 190 GKIH---KALLLLFLMYEHGKIPSRTSHDMLIKKL 221
GK H K L+ M G P ++++LI +
Sbjct: 556 GKTHQLNKVFELIDEMRSAGISPDVATYNILIHSM 590
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 49/174 (28%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAI------------------------ 129
F + G ++ +E+LM +K+ G++PD+ +T
Sbjct: 344 FIRKYCSDGYFDKGWELLMGMKDYGIRPDIVAFTVFIDKLCKAGFLREATSVLFKLKLFG 403
Query: 130 -----------MDGFCKVGRSNEAMELL-------NEAIERGVTQNVVTLIQLLQR---- 167
+DGFCKVG+ EA++L+ N + N+ + +L+
Sbjct: 404 ISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIF 463
Query: 168 ---LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
E+G +P + +I C +G+ KA + + G PS ++ +LI
Sbjct: 464 QEIFELGLLPDCYCYTTMIDGYCTLGRTDKAFQFFGALLKSGNPPSLITYTLLI 517
>gi|116310295|emb|CAH67313.1| OSIGBa0106G07.9 [Oryza sativa Indica Group]
Length = 520
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 63 IKK--DGTNWSVS-DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119
IKK G+N+ ++ DL+++L A S L G E AYE+ M + N
Sbjct: 164 IKKAVSGSNFELALKVFDLMLSLCYFPTLPIANAIVSILLKSGSAEIAYEVFMVLVNRKF 223
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI------ 173
PDVY Y I+ G CK G SN+A+ L +RG++ NV + L+ L +
Sbjct: 224 VPDVYMYNQILFGLCKSGCSNKALTLFCNLKKRGLSLNVYSYTALVLGLCKEKMWADAYR 283
Query: 174 -----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ ++ LC GKI A+ + + ++G T ++L+ L
Sbjct: 284 TLEKMCDEECKPSVVTYTVIVNFLCRDGKIDAAMHVFRMACKNGCCLDSTICNVLLHAL 342
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 43/199 (21%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+ + + +F ++KK G + +V + L++ L E+ A +A
Sbjct: 238 CKSGCSNKALTLFCNLKKRGLSLNVYSYTALVLGLC--KEKMWA--------------DA 281
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y L + ++ KP V TYT I++ C+ G+ + AM + A + G + LL
Sbjct: 282 YRTLEKMCDEECKPSVVTYTVIVNFLCRDGKIDAAMHVFRMACKNGCCLDSTICNVLLHA 341
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKI----------HKALLLLF 200
L E G +P T +++ G + KAL L+
Sbjct: 342 LCCEDRIPEAQVIVDLMEEAGLVPDYFTISSLAACFLKTGDVMTCQNFIRMVKKALALVS 401
Query: 201 LMYEHGKIPSRTSHDMLIK 219
M E G +PS T+++ ++K
Sbjct: 402 GMMERGLVPSTTTYNTILK 420
>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
Length = 467
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + G+ E+ + + ++ G++P++YTY ++ +C+ G A L +E
Sbjct: 75 TYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEM 134
Query: 150 IERGVTQNVV---TLIQLLQR----------LEM----GHIPRTITFNNVIQALCGVGKI 192
RG+ +NVV TLI L R L+M G P ITFN ++ GK+
Sbjct: 135 PVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKM 194
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
AL M G PS +++MLI
Sbjct: 195 SNALPFFNQMKAAGFQPSAVTYNMLI 220
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA + + GL P+ TYTA+M G+ G+ + L E GV N+ T
Sbjct: 52 GDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTY 111
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EM G + +++N +I LC GK+ A LL +M
Sbjct: 112 NCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRT 171
Query: 205 HGKIPSRTSHDMLI 218
G PS + ++L+
Sbjct: 172 EGTRPSIITFNLLV 185
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 37/192 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
KA + + FN +K G S +N L+ + A + S+ G
Sbjct: 190 KAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKV 249
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ +A+E+L ++ GL+ D +TY ++ C G +A +L
Sbjct: 250 TYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSM 309
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
E+GV P + ++ +I G +KAL L+ M + G IP
Sbjct: 310 GEKGVE------------------PSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIP 351
Query: 210 SRTSHDMLIKKL 221
+ S+ + I+ L
Sbjct: 352 NSASYGLTIRVL 363
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 33/177 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ + ++ +GT S+ FN L+ + A+ FF+ +K G
Sbjct: 165 LLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQ----------------MKAAG 208
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-GHIPRTI 177
+P TY ++ GFC+ A L++ ERG+ VT L+ H+ +
Sbjct: 209 FQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAF 268
Query: 178 ----------------TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+ +++ALC G + A L M E G PS +DM+I
Sbjct: 269 EILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMI 325
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 18/139 (12%)
Query: 101 VGRVEEAYEMLM-NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G V A ML K+ DV TA+++G CK G EA + +E G+ N V
Sbjct: 15 AGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEV 74
Query: 160 TLIQLL----------------QRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L+ + + G + P T+N +I C G+ +A L M
Sbjct: 75 TYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEM 134
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G + + S++ LI L
Sbjct: 135 PVRGIVRNVVSYNTLIAGL 153
>gi|224128023|ref|XP_002329235.1| predicted protein [Populus trichocarpa]
gi|222871016|gb|EEF08147.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+ + +L V GL+PDV +T +++G CKVG+ ++A+EL +E +ERG + L
Sbjct: 136 VDLGFSVLAKVIKLGLQPDVVPFTTLINGLCKVGKFSQAVELFDETVERGYNSLIHGLCN 195
Query: 164 LLQRLEMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
Q E I P +TFN ++ C GK+ +A +L M E
Sbjct: 196 CSQWKEASAILNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEAQGVLKTMTE 246
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 97 NHLMVGR-----VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N LM G V EA ++ + G KP+V++Y +++G+CK +EA +L NE I
Sbjct: 257 NSLMYGHSLWMEVVEARKLFGFMITKGCKPNVFSYNILINGYCKAEMIDEAKQLFNEMIH 316
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+G+T N+V ++N C +GK+ +A L M+ +G +P
Sbjct: 317 QGLTPNIV------------------SYNT--HGFCQLGKLREAQELNENMHTNGNLPDL 356
Query: 212 TSHDMLIKKLDQQ 224
++ +L+ +Q
Sbjct: 357 CTYSILLDGFCKQ 369
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++ EA E+ N+ +G PD+ TY+ ++DGFCK G A +L +E +G+ + +
Sbjct: 334 LGKLREAQELNENMHTNGNLPDLCTYSILLDGFCKQGNHIAARKLFSELFVQGLQRLLDE 393
Query: 161 LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
++ +++E G P ++N +I+ +A+ L+ M + G+
Sbjct: 394 ALETFRKMEEDGCPPNEWSYNVIIRGFLRHRDESRAVQLIGEMRDRGRC 442
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 29/188 (15%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------NHLMVG-----RV 104
+ + K G V F L+ L + + AV+ F N L+ G +
Sbjct: 140 FSVLAKVIKLGLQPDVVPFTTLINGLCKVGKFSQAVELFDETVERGYNSLIHGLCNCSQW 199
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
+EA +L + + + PD+ T+ ++D FCK G+ +EA +L E V +VVT L
Sbjct: 200 KEASAILNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEAQGVLKTMTEMSVELDVVTYNSL 259
Query: 165 L--QRLEM---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ L M G P ++N +I C I +A L M G
Sbjct: 260 MYGHSLWMEVVEARKLFGFMITKGCKPNVFSYNILINGYCKAEMIDEAKQLFNEMIHQGL 319
Query: 208 IPSRTSHD 215
P+ S++
Sbjct: 320 TPNIVSYN 327
>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g64583, mitochondrial; Flags: Precursor
gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
Length = 512
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L +++ N ++K G V +N LL L GR +A
Sbjct: 188 KNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY----------------SGRWSDAA 231
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
ML ++ + PDV T+TA++D F K G +EA EL E I+ V
Sbjct: 232 RMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD------------- 278
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +T+N++I LC G+++ A LM G P+ +++ LI
Sbjct: 279 -----PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLI 323
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ S L + + + K G S+ F LL ++N R+ +A+
Sbjct: 118 RCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVN----------------RIGDAF 161
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+++ + G +P+V Y ++DG CK G N A+ELLNE ++G+ +VVT LL L
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+E ++ + +G D++TY ++ G+C+VG+ A+++ + R VT +++T
Sbjct: 332 VDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCI 391
Query: 164 LLQRLEM-GHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LL L + G I + +N +I LC K+ KA L + G
Sbjct: 392 LLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEG 451
Query: 207 KIPSRTSHDMLIKKL 221
P ++ ++I L
Sbjct: 452 VKPDARTYTIMILGL 466
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
S+ DF LL A L +T + +FS + E Y G+ D+Y++T ++
Sbjct: 70 SIVDFTRLLTATANLRRYETVI-YFSQKM------ELY---------GISHDLYSFTILI 113
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190
FC+ R + A+ +L + +++G+ P +TF +++ C V
Sbjct: 114 HCFCRCSRLSFALSVLG------------------KMMKLGYEPSIVTFGSLLHGFCLVN 155
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+I A L+ LM + G P+ ++ LI L
Sbjct: 156 RIGDAFSLVILMVKSGYEPNVVVYNTLIDGL 186
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 18/122 (14%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M GR+ +A + + + G P+V TY ++ GFCK +E M+L G ++
Sbjct: 293 MHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADI- 351
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T+N +I C VGK+ AL + M P +H +L+
Sbjct: 352 -----------------FTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLH 394
Query: 220 KL 221
L
Sbjct: 395 GL 396
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+VE+A+E+ + +G+KPD TYT ++ G CK G EA EL+ E G+
Sbjct: 436 KVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487
>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 636
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV--- 158
G ++ A ML+ + +G+ P+V TY+++MDG+C V + N+A +LN + G N
Sbjct: 292 GNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSY 351
Query: 159 VTLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T+I +++M G P +T+N++I LC G+I A L+ M++
Sbjct: 352 CTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHD 411
Query: 205 HGKIPSRTSHDMLIKKL 221
+G+ + +++ LI L
Sbjct: 412 NGQPANIFTYNCLIDAL 428
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
V++A ++ +K+ G++PD+YT+ ++ G CKVGR A ++ + + +G + N
Sbjct: 433 HVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVN----- 487
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+N ++ LC G +A LL M ++G IP +++ LI+ L
Sbjct: 488 -------------AWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQAL 533
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 17/109 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-- 161
V+EA + +++ G+ PD TY +++DG CK GR + A EL++E + G N+ T
Sbjct: 364 VDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNC 423
Query: 162 --------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKA 195
I L++++ + G P TFN +I LC VG++ A
Sbjct: 424 LIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNA 472
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
+VG++EEA+ + + + PD YT+ ++D CK G A +L ++ GV NVV
Sbjct: 255 IVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVV 314
Query: 160 TLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L+ +MG P ++ +I C + + +AL L M
Sbjct: 315 TYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDM 374
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P + +++ LI L
Sbjct: 375 QFKGIAPDKVTYNSLIDGL 393
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +AYE+ + + PDV T++A++ GFC VG+ EA L E + + +
Sbjct: 224 VIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNIN-------- 275
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P TFN ++ ALC G + A +L +M + G +P+ ++ L+
Sbjct: 276 ----------PDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLM 320
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 32/137 (23%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119
FN + + S+ +FN +L +LV N +NH A + ++ G+
Sbjct: 54 FNHLLRTKPTSSIIEFNKILGSLVKSN---------NNHY-----PTAISLSRRLEFHGI 99
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179
PD++T+ +++ +C + N A ++ + L+MG+ P TITF
Sbjct: 100 TPDIFTFNILINCYCHMAEMNFAFSMMAKI------------------LKMGYEPDTITF 141
Query: 180 NNVIQALCGVGKIHKAL 196
N +I+ LC GK+ +AL
Sbjct: 142 NTLIKGLCLNGKVKEAL 158
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G+V+EA +V G D ++Y +++G CK+G + A+++L + + V NVV
Sbjct: 152 GKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMY 211
Query: 160 -TLIQLL--------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
T+I L Q + P +TF+ +I C VG++ +A L M
Sbjct: 212 NTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVL 271
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
P + ++L+ L ++
Sbjct: 272 KNINPDYYTFNILVDALCKE 291
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGR++ A ++ ++ + G + +TY +++G CK G +EA LL++ + G+ + VT
Sbjct: 466 VGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVT 525
Query: 161 LIQLLQRL 168
L+Q L
Sbjct: 526 YETLIQAL 533
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + M R++EA M + + P+V TY ++ GFCK R E MEL E
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421
Query: 150 IERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKI 192
+RG+ N VT L+Q L G P IT++ ++ LC GK+
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 481
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KAL++ + + P +++++I+ +
Sbjct: 482 EKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 33/182 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+FN ++ G V +N L+ L N+ GR +A +L N+
Sbjct: 277 LFNKMETKGIRPDVFTYNSLISCLC-------------NY---GRWSDASRLLSNMIERK 320
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------RL-EMG 171
+ P+V T++A++D F K G+ EA +L +E I+R + ++ T L+ RL E
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380
Query: 172 HI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
H+ P +T+N +I+ C ++ + + L M + G + + +++ LI+ L
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440
Query: 222 DQ 223
Q
Sbjct: 441 FQ 442
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 17/133 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A+ + ++ G++PDV+TY +++ C GR ++A LL+ IER + NVVT
Sbjct: 271 IDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSA 330
Query: 164 LL------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ ++L I R+I T++++I C ++ +A + LM
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390
Query: 207 KIPSRTSHDMLIK 219
P+ +++ LIK
Sbjct: 391 CFPNVVTYNTLIK 403
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL--------- 99
KA ++E +++F + + G + +N L+ L + D A K F +
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466
Query: 100 ----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G++E+A + ++ ++PD+YTY +++G CK G+ + +L
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+GV NV I + +I C G +A L M E G +P
Sbjct: 527 SLKGVKPNV------------------IIYTTMISGFCRKGLKEEADALFREMKEDGTLP 568
Query: 210 SRTSHDMLIK 219
++ LI+
Sbjct: 569 DSGCYNTLIR 578
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L + I +F + + S+ +FN LL A+ + + D + E +
Sbjct: 61 LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLG-------------ERMQ 107
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------- 165
N++ + D+Y+Y +++ FC+ + A+ +L + ++ G ++VTL LL
Sbjct: 108 NLR---ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSK 164
Query: 166 ----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q +EMG+ P T+TFN +I L K +A+ L+ M + G P ++
Sbjct: 165 RISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYG 224
Query: 216 MLIKKLDQQ 224
++ L ++
Sbjct: 225 AVVNGLCKR 233
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--- 159
+ EA ++ + G +PD+ TY A+++G CK G + A+ LL + + + +VV
Sbjct: 200 KASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 259
Query: 160 TLIQ-------------LLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
T+I L ++E I P T+N++I LC G+ A LL M E
Sbjct: 260 TIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIER 319
Query: 206 GKIPSRTSHDMLI 218
P+ + LI
Sbjct: 320 KINPNVVTFSALI 332
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++EA + + GL PDV TY ++D CK+GR ++A+ N+ I GVT
Sbjct: 460 IDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVT-------- 511
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
P ++ FN+++ LC V + KA L F M++ G P+
Sbjct: 512 ----------PNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPN 548
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 103 RVEEAYEMLMNVKNDG---LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
RVEEA E+L + DG P+V TY I+DG CK + A +L I++GV +VV
Sbjct: 176 RVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVV 235
Query: 160 TLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ L + G P +T+N +I LC + +A +L M
Sbjct: 236 TYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHM 295
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+ G P +++ +I L
Sbjct: 296 IDKGVKPDVVTYNTIIDGL 314
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
H + GR +EA ++L + + GLKPD+ +Y ++ G+CK GR + A L E + +G
Sbjct: 590 LIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKG 649
Query: 154 VTQNVVTLIQLLQRL 168
VT VT +LQ L
Sbjct: 650 VTPGAVTYSTILQGL 664
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 33/188 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + + E + IF+ + + G + V + L+ AL L GRV++A
Sbjct: 456 KKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKL----------------GRVDDAV 499
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL------- 161
+ NDG+ P+ + +++ G C V R +A EL E ++GV NVV
Sbjct: 500 LKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNL 559
Query: 162 -----IQLLQRL-----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ + QRL +G P I++N +I C G+ +A LL +M G P
Sbjct: 560 CNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDL 619
Query: 212 TSHDMLIK 219
S+D L++
Sbjct: 620 ISYDTLLR 627
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 77/181 (42%), Gaps = 37/181 (20%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMV---- 101
FN + DG + FN L+ L ++ + A + F N +M
Sbjct: 502 FNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCN 561
Query: 102 -GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+V A ++ +++ G++P+V +Y ++ G C GR++EA +LL+ + G+
Sbjct: 562 EGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLK----- 616
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P I+++ +++ C G+I A L M G P ++ +++
Sbjct: 617 -------------PDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQG 663
Query: 221 L 221
L
Sbjct: 664 L 664
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+ A +L ++ + G+K DV TY+ I+DG CK + A +L I++GV +VVT
Sbjct: 215 VDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNT 274
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ L + G P +T+N +I LC + +A +L M +
Sbjct: 275 IIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKD 334
Query: 207 KIPSRTSHDMLI 218
P +++ LI
Sbjct: 335 VKPDIQTYNCLI 346
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-- 161
V+ A +L ++ + G+KPDV TY I+DG CK + A +L I++GV +VVT
Sbjct: 250 VDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNT 309
Query: 162 -------IQLLQRLE--MGHI------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
Q + R + + H+ P T+N +I G+ + + L MY G
Sbjct: 310 IIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARG 369
Query: 207 KIPSRTSHDMLIKKL 221
P ++ +L+ L
Sbjct: 370 LDPDVVTYSLLLDYL 384
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 47/228 (20%)
Query: 21 SRSPSAAESLDLKENPRSLQAQRFV-DKIKASPL--KERIDIFNSIKKDGTNWSVSDFND 77
SR SAA R L+ +R + D+ ++ L + + +F+ + SV FN
Sbjct: 2 SRRASAARD-------RCLELERVIADRARSGSLGIDDALKLFDELLPHARPASVRAFNH 54
Query: 78 LLMALVMLNEQDT---AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
LL + T AV F+ R+ A ++ ++PD+ TY+ + FC
Sbjct: 55 LLNVVARARCSSTSELAVSLFN------RMARAC-------SNKVRPDLCTYSILTGCFC 101
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------------------EMGHIPRT 176
++GR ++ G N V + QLL L E G +P
Sbjct: 102 RLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNV 161
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGK---IPSRTSHDMLIKKL 221
++ N +++ LC ++ +AL LL M E G P+ +++ +I L
Sbjct: 162 VSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGL 209
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 17/142 (11%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+L G +E L + GL PDV TY+ ++D CK G+ EA ++ I +G+
Sbjct: 348 GYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKP 407
Query: 157 NVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLL 199
NV LL G P FN V+ A I +A+ +
Sbjct: 408 NVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIF 467
Query: 200 FLMYEHGKIPSRTSHDMLIKKL 221
M +HG P ++ +LI L
Sbjct: 468 SRMSQHGLSPDVVTYGILIDAL 489
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R EA E+ +N+ G + D+YTY I++G CK +EA ++ + + N+
Sbjct: 669 RFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNI---- 724
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
ITF +I L G+ A+ L + HG +P+ ++ +++K +
Sbjct: 725 --------------ITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNII 770
Query: 223 QQ 224
Q+
Sbjct: 771 QE 772
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 37/162 (22%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-------------HL 99
E +++ ++ K G W + +N +L L N D A K F + +
Sbjct: 670 FSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTI 729
Query: 100 MV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
M+ GR ++A ++ ++ + GL P+V TY +M + G +E + L A+E+
Sbjct: 730 MIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDE-FDNLFLAMEKS 788
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
G P ++ N +I++L G G+I +A
Sbjct: 789 -----------------GCTPDSVMLNAIIRSLLGRGEIMRA 813
>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 37/244 (15%)
Query: 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVS 73
+++ PS PS + L L + SL RF K + + + I FN + + S
Sbjct: 3 MIMRRPSSRPSGTQMLSLLPHFLSLSHNRFHSKSLHFNTIDGAISSFNRMLRMQPPPSTV 62
Query: 74 DFNDLLMALVMLNEQDTAVKF-------------FSNHLMVG------RVEEAYEMLMNV 114
DFN LL ++ + T + ++ H+++ RV A+ +L +
Sbjct: 63 DFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKI 122
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHI 173
G +PD T+T ++ G C G+ EA+ L ++ I G +VVT L+ L ++G+
Sbjct: 123 LKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNT 182
Query: 174 ----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
P +N +I +LC ++ +A L M G P +++ L
Sbjct: 183 SAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSL 242
Query: 218 IKKL 221
I L
Sbjct: 243 IHAL 246
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 36/156 (23%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA++++ + G++P+V TYTA+MDG C + +EA+++ + + +G NV++
Sbjct: 285 GKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISY 344
Query: 162 IQL------LQRLE------------------------------MGHIPRTITFNNVIQA 185
L +QR++ G +P I++N +I
Sbjct: 345 NTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLING 404
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
C + +I KA+ L M IP ++ LI L
Sbjct: 405 YCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGL 440
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEA 107
S + E + +F+++ G +V +N L+ + D A+ + ++EA
Sbjct: 320 SEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEA 379
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++ + G P+V +Y +++G+CK+ R ++AM L E + R
Sbjct: 380 VKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGE----------------MCR 423
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
E+ IP T+T++ +I LC V ++ A+ L M +IP+ ++ +L+ L
Sbjct: 424 QEL--IPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYL 475
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA + + +G +PDV TY +++G CKVG ++ A+ LL +++ NV
Sbjct: 145 GKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAY 204
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM G P T+N++I ALC + + LL M +
Sbjct: 205 NTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVD 264
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+P S + ++ L ++
Sbjct: 265 SKIMPDVVSFNTVVDALCKE 284
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G +E A ++ N+ + GL+PDV+TY+ +++G C+ G +EA +L E E G T N
Sbjct: 514 GELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLN 569
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V +A E+ ++ DG++ D TY +++ G C GR ++A L+ + + R + NV+T
Sbjct: 128 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 187
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++L + + + P T+N++I LC G++ +A +L LM
Sbjct: 188 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 247
Query: 204 EHGKIPSRTSHDMLI 218
G +P +++ LI
Sbjct: 248 TKGCLPDVVTYNTLI 262
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 30/166 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K E + ++ + + + V +N L+ L M H GRV+EA
Sbjct: 196 VKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCM-------------H---GRVDEA 239
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ML + G PDV TY +++GFCK R +E +L E +RG+ + +T ++Q
Sbjct: 240 KQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 299
Query: 168 L--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
M P T++ ++ LC ++ KAL+L
Sbjct: 300 YFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLF 345
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A +++ ++ G +PDV Y I+DG CK+G N+A+EL + GV + VT
Sbjct: 95 RVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYN 154
Query: 163 QLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L +P ITF VI GK +A+ L M
Sbjct: 155 SLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRR 214
Query: 206 GKIPSRTSHDMLIKKL 221
P +++ LI L
Sbjct: 215 CVDPDVFTYNSLINGL 230
Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL---------------- 161
G +PDV T +++++GFC+ R +A++L+++ E G +VV
Sbjct: 75 GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDA 134
Query: 162 IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
++L R+E G +T+N+++ LC G+ A L+ M +P+
Sbjct: 135 VELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPN 184
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
+G VE+A+++ ++ GLKPDV +YT ++ GFC+
Sbjct: 370 IGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCR 404
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 34/177 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------- 98
K+ + E +F + + G +N ++ D A + FS
Sbjct: 267 KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYS 326
Query: 99 -LMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
L+ G RVE+A + N++ ++ D+ TY ++ G CK+G +A +L +
Sbjct: 327 ILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK 386
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
G+ P +++ +I C + K+ LL M E G +P
Sbjct: 387 GLK------------------PDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425
>gi|218195047|gb|EEC77474.1| hypothetical protein OsI_16301 [Oryza sativa Indica Group]
Length = 552
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 63 IKK--DGTNWSVS-DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119
IKK G+N+ ++ DL+++L A S L G E AYE+ M + N
Sbjct: 164 IKKAVSGSNFELALKVFDLMLSLCYFPTLPIANAIVSILLKSGSAEIAYEVFMVLVNRKF 223
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI------ 173
PDVY Y I+ G CK G SN+A+ L +RG++ NV + L+ L +
Sbjct: 224 VPDVYMYNQILFGLCKSGCSNKALTLFCNLKKRGLSLNVYSYTALVLGLCKEKMWADAYR 283
Query: 174 -----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ ++ LC GKI A+ + + ++G T ++L+ L
Sbjct: 284 TLEKMCDEECKPSVVTYTVIVNFLCRDGKIDAAMHVFRMACKNGCCLDSTICNVLLHAL 342
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 43/199 (21%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+ + + +F ++KK G + +V + L++ L E+ A +A
Sbjct: 238 CKSGCSNKALTLFCNLKKRGLSLNVYSYTALVLGLC--KEKMWA--------------DA 281
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y L + ++ KP V TYT I++ C+ G+ + AM + A + G + LL
Sbjct: 282 YRTLEKMCDEECKPSVVTYTVIVNFLCRDGKIDAAMHVFRMACKNGCCLDSTICNVLLHA 341
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKI----------HKALLLLF 200
L E G +P T +++ G + KAL L+
Sbjct: 342 LCCEDRIPEAQVIVDLMEEAGLVPDYFTISSLAACFLKTGDVMTCQNFIRMVKKALALVS 401
Query: 201 LMYEHGKIPSRTSHDMLIK 219
M E G +PS T+++ ++K
Sbjct: 402 GMMERGLVPSTTTYNTILK 420
>gi|449523852|ref|XP_004168937.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Cucumis sativus]
Length = 683
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 16/144 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F +N GR+EEA E++ + + GLKPD+ YT +MDGF K G+ + A+ L E +
Sbjct: 226 FVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKN 285
Query: 154 VTQNVVT---LIQLLQRL-------------EMGHIPRTITFNNVIQALCGVGKIHKALL 197
V ++VT LI L +L EMG P T+N ++ G AL
Sbjct: 286 VVFDIVTFNVLINCLFKLGKSDTESIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALE 345
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
L M IP+ + +++I L
Sbjct: 346 LWNEMKSRKLIPNAITCNIMINGL 369
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA ++L +K GL P+ TY +M G CKV + E + + E + +
Sbjct: 513 GLIHEADDLLSEIKKRGLVPNACTYETLMCGHCKVRNTKECLRIYCEMVIK--------- 563
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G IP+ +N +I +GK+ +A L+ M G P+ T++D+LI
Sbjct: 564 ---------GFIPKPRAYNMLIGYFSKMGKMKQAKELMNEMQTKGVSPTCTTYDILI 611
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA + N+ L P+ TY+A++D CK+G N A L+E E+
Sbjct: 94 GQIKEAEYLFCNLYQLNLVPNYITYSALIDSRCKLGDINGAESALHEMEEKDC------- 146
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P IT++++I G +H A +L M +P+ ++ +L+
Sbjct: 147 -----------VPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYAILL 192
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G A E+ +K+ L P+ T +++G C+ GR A+++L E + G+ T
Sbjct: 338 GNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTY 397
Query: 162 IQLLQRLEMGHIPRTI-----------------TFNNVIQALCGVGKIHKALLLLFLMYE 204
LL TI +N +I LC +G KA +L M E
Sbjct: 398 RILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEE 457
Query: 205 HGKIPSRTSHDMLI 218
G I T+++ LI
Sbjct: 458 RGIIADTTTYNALI 471
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ E +L + G+ + +YT ++D K G+ EA+ L I RG +V+
Sbjct: 24 GKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGKVAEALMTLACMIVRGNNFDVIAC 83
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++ +P IT++ +I + C +G I+ A L M E
Sbjct: 84 TVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSALIDSRCKLGDINGAESALHEMEE 143
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+P+ ++ LI +Q
Sbjct: 144 KDCVPNVITYSSLINGYVKQ 163
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHIPRT 176
G+ PDV T+ +I+ G CK G+ +E LL E + G+ N V+ LL L + G +
Sbjct: 5 GIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGKVAEA 64
Query: 177 ----------------ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
I +I L G+I +A L +Y+ +P+ ++ LI
Sbjct: 65 LMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSALI 122
>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
Length = 454
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 25/210 (11%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDT 90
L +N + +A++ D + LK I + ++ + ++ + +DLL AL++ N
Sbjct: 122 LCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLL-ALMVQNGMQL 180
Query: 91 AVKFFSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
F N L+ +V+E + ++ GL P+ Y ++DG CK+GR ++AM
Sbjct: 181 DHHVF-NILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLN 239
Query: 146 LNEAIERGVTQNVVTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCG 188
+ I++G+T NVV L+ L+ G P + FN ++ +LC
Sbjct: 240 FEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCK 299
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G++ ++ L L+ G P ++ LI
Sbjct: 300 EGRVIESKKLFDLLGHIGVNPDVITYSTLI 329
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
I +S+ K+G DLL + + + T + + G+++ A ++L + + G
Sbjct: 293 ILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVG 352
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
LKPD TY+ +++G+CK+ R +A+ L E GV +++T +L L
Sbjct: 353 LKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGL 402
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 52/172 (30%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ E+A + + +DG++PDV TY ++MD CK G+ EA ++ + ++RG+ ++ T
Sbjct: 91 GQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTY 150
Query: 162 IQLLQR-------LEM-------------------------------------------- 170
LL +EM
Sbjct: 151 GTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQ 210
Query: 171 -GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G P + + VI LC +G++ A+L M + G P+ + LI L
Sbjct: 211 QGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHAL 262
Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH-------- 172
PDV +Y I+DG K G ++A +E ++R V+ + VT ++ L
Sbjct: 9 PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68
Query: 173 -----IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P T+N+++ C G+ KA+ + M G P +++ L+ L
Sbjct: 69 LTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYL 122
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E LD NP + +D + K + E +F+ + G N V ++ L+ +
Sbjct: 277 EILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAG 336
Query: 87 EQDTAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYT 127
+ D A+K + + VG R+E+A + ++++G+ PD+ TY
Sbjct: 337 KMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYN 396
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERG 153
I+ G + R+ A EL E G
Sbjct: 397 IILHGLFRTRRTAAAKELYARITESG 422
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + M R++EA M + + P+V TY ++ GFCK R E MEL E
Sbjct: 346 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 405
Query: 150 IERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKI 192
+RG+ N VT L+Q L G P IT++ ++ LC GK+
Sbjct: 406 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 465
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KAL++ + + P +++++I+ +
Sbjct: 466 EKALVVFEYLQKSKMEPDIYTYNIMIEGM 494
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL--------- 99
KA ++E +++F + + G + +N L+ L + D A K F +
Sbjct: 391 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 450
Query: 100 ----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G++E+A + ++ ++PD+YTY +++G CK G+ + +L
Sbjct: 451 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 510
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+GV NV I + +I C G +A L M E G +P
Sbjct: 511 SLKGVKPNV------------------IIYTTMISGFCRKGLKEEADALFREMKEDGTLP 552
Query: 210 SRTSHDMLIK 219
+ +++ LI+
Sbjct: 553 NSGTYNTLIR 562
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + P+V T++A++D F K G+ EA +L +E I+R + ++ T
Sbjct: 288 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 347
Query: 162 IQLLQ------RL-EMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL E H+ P +T+N +I+ C ++ + + L M +
Sbjct: 348 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ 407
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + +++ LI+ L Q
Sbjct: 408 RGLVGNTVTYNTLIQGLFQ 426
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A + + N G++P+V TY +++ C GR ++A LL++ IER + NVVT
Sbjct: 255 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 314
Query: 164 LL------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ ++L I R+I T++++I C ++ +A + LM
Sbjct: 315 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 374
Query: 207 KIPSRTSHDMLIK 219
P+ +++ LIK
Sbjct: 375 CFPNVVTYNTLIK 387
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 37/194 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------------FSNHL 99
L + +D+F + + S+ +FN LL A+ +N+ D + +S ++
Sbjct: 45 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 104
Query: 100 MV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++ ++ A +L + G +PD+ T +++++G+C R +EA+ L+++
Sbjct: 105 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 164
Query: 154 VTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKAL 196
N VT L+ L + G P T+ V+ LC G I AL
Sbjct: 165 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 224
Query: 197 LLLFLMYEHGKIPS 210
LL M E GKI +
Sbjct: 225 SLLKKM-EKGKIEA 237
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A +L ++ ++ DV YT I+D C N+A+ L E +G+ NVV
Sbjct: 218 GDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV-- 275
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+N++I+ LC G+ A LL M E P+ + LI
Sbjct: 276 ----------------TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 316
>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 577
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + M R++EA M + + P+V TY +++GFCK R +E +EL E
Sbjct: 367 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREM 426
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
+RG+ N VT L+ Q + G P +T+N ++ LC GK+
Sbjct: 427 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKL 486
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KA+++ + P+ +++++I+ +
Sbjct: 487 EKAMVVFEYLQRSKMEPTIYTYNIMIEGM 515
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L + I +F + K S+ +FN LL A+ + + D + + E + L
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVIS----------LGEKMQRL- 114
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------- 165
G+ ++YTY +++ FC+ + + A+ LL + ++ G ++VTL LL
Sbjct: 115 -----GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169
Query: 166 ----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q +EMG+ P TITF +I L K +A+ L+ M + G P+ ++
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 216 MLIKKLDQQ 224
+++ L ++
Sbjct: 230 VVVNGLCKR 238
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 17/131 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A + ++N G++P+V TY++++ C R ++A LL++ IER + NVVT L
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL 336
Query: 165 L------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ ++L I R+I T++++I C ++ +A + LM
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396
Query: 208 IPSRTSHDMLI 218
P+ +++ LI
Sbjct: 397 FPNVVTYNTLI 407
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------SNHLMV---- 101
+F + DG + ++ +N LL L + + A+ F + ++M+
Sbjct: 457 VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 516
Query: 102 --GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
G+VE+ +++ ++ G+KPDV Y ++ GFC+ G EA L + E G
Sbjct: 517 KAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
R+ +A ++ + G +PD T+T ++ G +++EA+ L++ ++RG N+VT
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 162 ---------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL ++E I + ++ VI +LC AL L M
Sbjct: 230 VVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 289
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ ++ LI L
Sbjct: 290 GVRPNVITYSSLISCL 305
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A+ +L ++ ++ +V Y+ ++D CK ++A+ L E +GV NV+T
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 298
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
L+ L E P +TFN +I A GK+ +A
Sbjct: 299 SSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEA 349
>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 595
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 18/112 (16%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
H M+ ++++A E+ + G P++ TYT+++ G+C++ N+AM L E + G+ N
Sbjct: 333 HCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPN 392
Query: 158 VVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+V T+N +I C GK A L F+M++HG++P
Sbjct: 393 IV------------------TWNTLIGGFCKAGKPVAAKELFFVMHKHGQLP 426
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 33/206 (16%)
Query: 40 QAQRFVDKIK----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
QA RFVD +K S R I N + K G + + L L + EQ+ +
Sbjct: 166 QAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAA------LSYLKKMEEQNCNLDVT 219
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ + +V G V EA+++ + G++PD++TY ++ G C R EA LL
Sbjct: 220 AYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANM 279
Query: 150 IERGVTQNVVTLIQLLQR-LEMGHIPRT----------------ITFNNVIQALCGVGKI 192
+ +G+ +V T + R L+ G I R +T++++I C + ++
Sbjct: 280 MRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQM 339
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
A+ + LM G +P+ ++ LI
Sbjct: 340 KDAMEVFDLMIRKGCLPNIVTYTSLI 365
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +A + ++K+ G + D YT AI++G CKVG S+ A+ L + E+ +V
Sbjct: 162 GNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVT-- 219
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N V+ LC G + +A L M G P +++ LI L
Sbjct: 220 ----------------AYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGL 263
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181
D+ Y+ I++G C G+ N+A+EL + +GV +VVT +N
Sbjct: 462 DIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVT------------------YNI 503
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+I LC G + A LL M E+G P ++++ ++ L
Sbjct: 504 MINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGL 543
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 83/213 (38%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------- 96
+K + IF+ + G V ++ ++ MLN+ A++ F
Sbjct: 299 LKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNI 358
Query: 97 ---NHLMVGRVE-----EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
L+ G E +A L + N+GL P++ T+ ++ GFCK G+ A EL
Sbjct: 359 VTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFV 418
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPR-----------------TITFNNVIQALCGVGK 191
+ G ++ T +L L H I ++ ++ +C GK
Sbjct: 419 MHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGK 478
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
++ AL L + G +++++I L ++
Sbjct: 479 LNDALELFSYLSSKGVKIDVVTYNIMINGLCKE 511
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
G++ +A E+ + + G+K DV TY +++G CK G ++A +LL + E G + T
Sbjct: 477 GKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTY 536
Query: 161 --LIQ-LLQRLEMGHIPRTITF 179
+Q LL+R E+ + + F
Sbjct: 537 NVFVQGLLRRYEISKSTKYLMF 558
>gi|449468277|ref|XP_004151848.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g14770, mitochondrial-like, partial [Cucumis
sativus]
Length = 697
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 16/144 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
F +N GR+EEA E++ + + GLKPD+ YT +MDGF K G+ + A+ L E +
Sbjct: 240 FVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKN 299
Query: 154 VTQNVVT---LIQLLQRL-------------EMGHIPRTITFNNVIQALCGVGKIHKALL 197
V ++VT LI L +L EMG P T+N ++ G AL
Sbjct: 300 VVFDIVTFNVLINCLFKLGKSDTESIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALE 359
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
L M IP+ + +++I L
Sbjct: 360 LWNEMKSRKLIPNAITCNIMINGL 383
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA ++L +K GL P+ TY +M G CKV + E + + E + +
Sbjct: 527 GLIHEADDLLSEIKKRGLVPNACTYETLMCGHCKVRNTKECLRIYCEMVIK--------- 577
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
G IP+ +N +I +GK+ +A L+ M G P+ T++D+LI
Sbjct: 578 ---------GFIPKPRAYNMLIGYFSKMGKMKQAKELMNEMQTKGVSPTCTTYDILI 625
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+++EA + N+ L P+ TY+A++DG CK+G N A L+E E+
Sbjct: 108 GQIKEAEYLFCNLYQLNLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDC------- 160
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P IT++++I G +H A +L M +P+ ++ +L+
Sbjct: 161 -----------VPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYAILL 206
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+EEA + + G+ PDV T+ +I+ G CK G+ +E LL E + G+ N V+
Sbjct: 5 LEEALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTI 64
Query: 164 LLQRL-EMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LL L + G + I +I L G+I +A L +Y+
Sbjct: 65 LLDALFKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLN 124
Query: 207 KIPSRTSHDMLI 218
+P+ ++ LI
Sbjct: 125 LVPNYITYSALI 136
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G A E+ +K+ L P+ T +++G C+ GR A+++L E + G+ T
Sbjct: 352 GNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTY 411
Query: 162 IQLLQRLEMGHIPRTI-----------------TFNNVIQALCGVGKIHKALLLLFLMYE 204
LL TI +N +I LC +G KA +L M E
Sbjct: 412 RILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEE 471
Query: 205 HGKIPSRTSHDMLI 218
G I T+++ LI
Sbjct: 472 RGIIADTTTYNALI 485
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ E +L + G+ + +YT ++D K G+ EA+ L I RG +V+
Sbjct: 38 GKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGKVAEALMTLACMIVRGNNFDVIAC 97
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L ++ +P IT++ +I C +G I+ A L M E
Sbjct: 98 TVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSALIDGRCKLGDINGAESALHEMEE 157
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
+P+ ++ LI +Q
Sbjct: 158 KDCVPNVITYSSLINGYVKQ 177
>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
Length = 501
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 34/155 (21%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E ++ ++ G + SV + ++ L LN V+EA +L ++
Sbjct: 238 EAKELLQEMETKGCSPSVVTYTSIIHGLCQLNN----------------VDEAMRLLEDM 281
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
K+ ++P+V+TY+++MDGFCK G S+ A ++L I++ RL P
Sbjct: 282 KDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQK--------------RLR----P 323
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
I+++ ++ LC GKI++AL + M G P
Sbjct: 324 NMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKP 358
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA E+ +K G KPD Y I++ C V R EA L+E + G+ N +T
Sbjct: 339 GKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLCGIKPNRITW 398
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
++ T N VI LC + ++A L + G
Sbjct: 399 SLHVR-----------THNRVIHGLCTINNSNRAFQLYLSVLTRG 432
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPD-------VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
V R +EA L + G+KP+ V T+ ++ G C + SN A +L + RG
Sbjct: 373 VSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRG 432
Query: 154 VTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
++ V T LL+ EM G IP+ ++ ++ C K A+
Sbjct: 433 ISITVDTFNSLLKCFCNKKDLPKTSRILDEMVINGCIPQGEMWSTMVNCFCDERKACDAM 492
Query: 197 LLLFL 201
LL L
Sbjct: 493 KLLQL 497
>gi|356509834|ref|XP_003523650.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 472
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-- 159
G V+EA +M+ ++ +GLK DV T T+++ GFC VG+S+EA++ L E + RG+ +V
Sbjct: 234 GEVDEARKMMSRMRLNGLKDDVATNTSLLKGFCIVGKSDEAVKHLREMVSRGMKPDVKAY 293
Query: 160 ---------------TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L + + G P +FN V + L GKI + L LL M +
Sbjct: 294 GVVVNEYCKIRKPSEAVLLLREMVVRGVKPNVSSFNAVFRVLVDEGKIDEGLHLLKQMPK 353
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ S+ +I L
Sbjct: 354 MGCSPNFLSYCTVICGL 370
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 18/147 (12%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T +VG+ +EA + L + + G+KPDV Y +++ +CK+ + +EA+ LL E
Sbjct: 257 TNTSLLKGFCIVGKSDEAVKHLREMVSRGMKPDVKAYGVVVNEYCKIRKPSEAVLLLREM 316
Query: 150 IERGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGV-GK 191
+ RGV NV + + LL+++ +MG P +++ VI LC V G+
Sbjct: 317 VVRGVKPNVSSFNAVFRVLVDEGKIDEGLHLLKQMPKMGCSPNFLSYCTVICGLCEVKGR 376
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ + L+ M ++G T ++ L+
Sbjct: 377 MQQVEELVSNMLQNGHNLDATMYNCLL 403
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--------IQLLQRLEM 170
L+PDVYTYT ++ GFCKVG+ A ++ +E N+VT +++ R+ +
Sbjct: 192 LEPDVYTYTTMIRGFCKVGKVESARKVFDEM---RCEPNIVTYNTGEVDEARKMMSRMRL 248
Query: 171 GHIPRTITFN-NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+ + N ++++ C VGK +A+ L M G P ++ +++ +
Sbjct: 249 NGLKDDVATNTSLLKGFCIVGKSDEAVKHLREMVSRGMKPDVKAYGVVVNE 299
>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
Length = 702
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A E+ N+ DG KP+ + Y A+++GFC+V + N+A+++ E +T N
Sbjct: 453 GRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIE-----MTSN---- 503
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G P IT+N +I LC K +A L M E G P ++ LI+ L
Sbjct: 504 ---------GCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGL 554
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 83/199 (41%), Gaps = 36/199 (18%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LM 100
+++ + K G VS +N L+ + A KF+ + L
Sbjct: 321 VYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLD 380
Query: 101 VGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
G V EA E+L ++ND PD T+ ++ G C+ G +N A E+L +A G +V
Sbjct: 381 SGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVF 440
Query: 160 TLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ ++ R ++ G P + +N +I C V KI+ A+ + M
Sbjct: 441 SYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEM 500
Query: 203 YEHGKIPSRTSHDMLIKKL 221
+G P+ +++ LI L
Sbjct: 501 TSNGCCPTIITYNTLIDGL 519
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V ++ +A ++ + + ++G P + TY ++DG CK + EA L E +ERG ++ T
Sbjct: 487 VSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRT 546
Query: 161 ---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LI+ L R L+ G + N +I LC GK+ +A + M
Sbjct: 547 YASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMK 606
Query: 204 EHGKIPSRTSHDMLI 218
E P+ +++ L+
Sbjct: 607 EKNCSPNLVTYNTLM 621
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+V+EA+ + + +K P++ TY +MDGF ++G ++A L ++ G+
Sbjct: 592 AGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLK----- 646
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +T+N I+ LC + + +LLL + G +P+ + +L++
Sbjct: 647 -------------PDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRA 693
Query: 221 L 221
+
Sbjct: 694 V 694
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ----N 157
G V+ A + ++ GL DV Y +++ GFC+VGR+ EA + + G+ Q N
Sbjct: 313 GDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYN 372
Query: 158 VVT-----------LIQLLQRLE--MGHIPRTITFNNVIQALCGVGKIHKALLLL 199
++T +LL++LE P +TF +I LC G ++A +L
Sbjct: 373 IMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEIL 427
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 50/205 (24%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV---- 92
RSL A+ VD+ + +F+S+++ G ++ L+ L ++ D A+
Sbjct: 166 RSLCARGDVDRA--------VSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLD 217
Query: 93 ---------------KFFSNHLMVGRVEEA---YEMLMNVKNDGLKPDVYTYTAIMDGFC 134
S G E+A +E L V++ G P++ TY ++DG C
Sbjct: 218 EMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQL--VRDPGASPNLATYKVMLDGLC 275
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
K+GR EA E+ + R + N H T+T+ +I LC G +
Sbjct: 276 KLGRFKEAGEVWS----RMMANN--------------HQADTVTYGILIHGLCRSGDVDS 317
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIK 219
A + M + G + + ++ LIK
Sbjct: 318 AARVYSDMVKAGLVLDVSVYNSLIK 342
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 41/196 (20%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSN--HLMVGR--------------------- 103
G N V N LL A V A FF++ H GR
Sbjct: 114 GCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGD 173
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+ A + +++ G+ PD TY+ +M G K + + A++LL+E GV + V
Sbjct: 174 VDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNA 233
Query: 164 LLQ---RLEM---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL R M G P T+ ++ LC +G+ +A + M +
Sbjct: 234 LLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMAN 293
Query: 206 GKIPSRTSHDMLIKKL 221
++ +LI L
Sbjct: 294 NHQADTVTYGILIHGL 309
>gi|38344480|emb|CAE05495.2| OSJNBa0022H21.15 [Oryza sativa Japonica Group]
Length = 520
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 63 IKK--DGTNWSVS-DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119
IKK G+N+ ++ DL+++L A S L G E AYE+ M + N
Sbjct: 164 IKKAVSGSNFELALKVFDLMLSLCYFPTLPIANAIVSILLKSGSAEIAYEVFMVLVNRKF 223
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI------ 173
PDVY Y I+ G CK G SN+A+ L +RG++ NV + L+ L +
Sbjct: 224 VPDVYMYNQILFGLCKSGCSNKALTLFCNLKKRGLSLNVYSYTALVLGLCKEKMWADAYR 283
Query: 174 -----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ ++ LC GKI A+ + + ++G T ++L+ L
Sbjct: 284 ALEKMCDEECKPSVVTYTVIVNFLCRDGKIDAAMHVFRMACKNGCCLDSTICNVLLHAL 342
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 43/199 (21%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+ + + +F ++KK G + +V + L++ L E+ A +A
Sbjct: 238 CKSGCSNKALTLFCNLKKRGLSLNVYSYTALVLGLC--KEKMWA--------------DA 281
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y L + ++ KP V TYT I++ C+ G+ + AM + A + G + LL
Sbjct: 282 YRALEKMCDEECKPSVVTYTVIVNFLCRDGKIDAAMHVFRMACKNGCCLDSTICNVLLHA 341
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKI----------HKALLLLF 200
L E G +P T +++ G + KAL L+
Sbjct: 342 LCCEDRIPEARVIVDLMEEAGLVPDYFTISSLAAGFLKTGDVMTCQNFIRMVKKALALVS 401
Query: 201 LMYEHGKIPSRTSHDMLIK 219
M E G +PS T+++ ++K
Sbjct: 402 GMMERGLVPSTTTYNTILK 420
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA ++ ++ GL PD +T +++ GF K G + M N R V + + +
Sbjct: 347 RIPEARVIVDLMEEAGLVPDYFTISSLAAGFLKTG---DVMTCQN--FIRMVKKALALVS 401
Query: 163 QLLQRLEMGHIPRTITFNNVIQALC 187
+++R G +P T T+N +++ C
Sbjct: 402 GMMER---GLVPSTTTYNTILKGFC 423
>gi|125545643|gb|EAY91782.1| hypothetical protein OsI_13425 [Oryza sativa Indica Group]
Length = 406
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA + + GL+PDV TY +++G CK R A E+ +E + +G + N VT
Sbjct: 231 RIYEAGRLFRRMGEKGLEPDVVTYNCLINGLCKTYRVERAHEVFDEMLRKGCSPNRVTYN 290
Query: 163 QLLQRLEM-----------------GHIPRT-ITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ + GH T T+ +I +LC G+I +A + M E
Sbjct: 291 SFVRYYSVVNEVDKAVKWMREMVARGHGGATSSTYTPIIHSLCESGRISEARQFIIEMAE 350
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G +P ++ ++ ++++
Sbjct: 351 SGHLPREHTYKLVKDEIEK 369
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 102 GRVEEAYEMLMNVKNDGLK--PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
GR ++A +L ++ G + PD YTYT ++ +C++G + + + +
Sbjct: 182 GRFKDARFLLDQMERPGARCGPDSYTYTVLISSYCRIG--------VETGCRKAARRRIY 233
Query: 160 TLIQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+L +R+ E G P +T+N +I LC ++ +A + M G P+R +++ +
Sbjct: 234 EAGRLFRRMGEKGLEPDVVTYNCLINGLCKTYRVERAHEVFDEMLRKGCSPNRVTYNSFV 293
Query: 219 K 219
+
Sbjct: 294 R 294
>gi|222631078|gb|EEE63210.1| hypothetical protein OsJ_18020 [Oryza sativa Japonica Group]
Length = 975
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 81/202 (40%), Gaps = 36/202 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLM----------ALVMLNEQDT---------AVK 93
L+E IFN +K G S +N L AL +L E T +
Sbjct: 491 LEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTE 550
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
GRV EA + L + G PD+ TY+A M+G C G ++A+ L + +
Sbjct: 551 MVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKY 610
Query: 154 VTQNVVT---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+VV LI ++ LE G P +T+N +I C G+I KA+
Sbjct: 611 YLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAI 670
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
L M K P+ ++ LI
Sbjct: 671 SYLDKMVYEEKQPTVITYTSLI 692
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+E+A L + + +P V TYT+++DGFC GR +EA++L E E+G N +
Sbjct: 663 TGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIA 722
Query: 161 LIQLLQRL-EMGHIPRTITF 179
+ L + G I +T+
Sbjct: 723 YTAFINGLRKCGRIETALTY 742
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 37/185 (20%)
Query: 55 ERIDIFNSIKKD----GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
+++D+ ++ KD G + FNDL+ L ++ R+EE Y +
Sbjct: 454 KKLDMALALTKDMISLGCKGKILMFNDLIHELCNMD----------------RLEEGYGI 497
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG---VTQNVVTLIQLL-- 165
+K+ GL P +TY ++ G C+ A++LL E G +N ++Q L
Sbjct: 498 FNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCF 557
Query: 166 ------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
L++G +P +T++ + +C G++ AL L + +P +
Sbjct: 558 SGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVA 617
Query: 214 HDMLI 218
H++LI
Sbjct: 618 HNILI 622
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 82 LVMLNEQDTAVKFFS---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
+V +Q T + + S GR +EA ++ ++ G P+ YTA ++G K GR
Sbjct: 676 MVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGR 735
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
A+ E + +G + +L+ + L
Sbjct: 736 IETALTYFEEMVTKGFELDTFSLLYFINFL 765
>gi|226530647|ref|NP_001146846.1| peptidase S8 and S53, subtilisin, kexin, sedolisin [Zea mays]
gi|194699540|gb|ACF83854.1| unknown [Zea mays]
gi|195604202|gb|ACG23931.1| peptidase S8 and S53, subtilisin, kexin, sedolisin [Zea mays]
gi|414886441|tpg|DAA62455.1| TPA: peptidase S8 and S53, subtilisin, kexin, sedolisin [Zea mays]
Length = 401
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 25/222 (11%)
Query: 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD 74
LL+D+ +RS A SL L RSL D + + S+ + + +
Sbjct: 157 LLIDAAARSGHVAVSLSLFHRLRSLHVSPDADTYRI--------LTQSLCRKAQVRTAAT 208
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
D ++ + + + ++ EAY +L ++ G+ PD+ Y ++ G C
Sbjct: 209 LLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGMC 268
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-----------------GHIPRTI 177
+ GR +A +++ + ++ G T N VT ++ L + G +P
Sbjct: 269 REGRPLDACKVVVDMMDNGCTPNAVTYGTVVNGLCVSGLYDKAEAYLVDMVGKGLVPHFS 328
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
F++VI+ C VGK+ +A ++ M + G +P S +I+
Sbjct: 329 VFHSVIRGCCTVGKVEEAAQIMSRMLDLGVVPHVESWSSVIR 370
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V + + +++ + PD TY + C+ + A LL+E + RG+ + +
Sbjct: 166 GHVAVSLSLFHRLRSLHVSPDADTYRILTQSLCRKAQVRTAATLLDEMLHRGIPADPLAY 225
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L L G P + +N VI +C G+ A ++ M +
Sbjct: 226 TTVLNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGMCREGRPLDACKVVVDMMD 285
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P+ ++ ++ L
Sbjct: 286 NGCTPNAVTYGTVVNGL 302
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + M R++EA M + + P+V TY ++ GFCK R E MEL E
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421
Query: 150 IERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKI 192
+RG+ N VT L+Q L G P IT++ ++ LC GK+
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 481
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KAL++ + + P +++++I+ +
Sbjct: 482 EKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL--------- 99
KA ++E +++F + + G + +N L+ L + D A K F +
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466
Query: 100 ----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G++E+A + ++ ++PD+YTY +++G CK G+ + +L
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+GV NV I + +I C G +A L M E G +P
Sbjct: 527 SLKGVKPNV------------------IIYTTMISGFCRKGLKEEADALFREMKEDGTLP 568
Query: 210 SRTSHDMLIK 219
+ +++ LI+
Sbjct: 569 NSGTYNTLIR 578
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + P+V T++A++D F K G+ EA +L +E I+R + ++ T
Sbjct: 304 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363
Query: 162 IQLLQ------RL-EMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL E H+ P +T+N +I+ C ++ + + L M +
Sbjct: 364 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ 423
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + +++ LI+ L Q
Sbjct: 424 RGLVGNTVTYNTLIQGLFQ 442
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A + + N G++P+V TY +++ C GR ++A LL++ IER + NVVT
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330
Query: 164 LL------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ ++L I R+I T++++I C ++ +A + LM
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390
Query: 207 KIPSRTSHDMLIK 219
P+ +++ LIK
Sbjct: 391 CFPNVVTYNTLIK 403
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 37/194 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------------FSNHL 99
L + +D+F + + S+ +FN LL A+ +N+ D + +S ++
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 100 MV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++ ++ A +L + G +PD+ T +++++G+C R +EA+ L+++
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 154 VTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKAL 196
N VT L+ L + G P T+ V+ LC G I AL
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 197 LLLFLMYEHGKIPS 210
LL M E GKI +
Sbjct: 241 SLLKKM-EKGKIEA 253
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A +L ++ ++ DV YT I+D C N+A+ L E +G+ NVV
Sbjct: 234 GDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV-- 291
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+N++I+ LC G+ A LL M E P+ + LI
Sbjct: 292 ----------------TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 332
>gi|297723237|ref|NP_001173982.1| Os04g0475800 [Oryza sativa Japonica Group]
gi|255675551|dbj|BAH92710.1| Os04g0475800 [Oryza sativa Japonica Group]
Length = 568
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 63 IKK--DGTNWSVS-DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119
IKK G+N+ ++ DL+++L A S L G E AYE+ M + N
Sbjct: 164 IKKAVSGSNFELALKVFDLMLSLCYFPTLPIANAIVSILLKSGSAEIAYEVFMVLVNRKF 223
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI------ 173
PDVY Y I+ G CK G SN+A+ L +RG++ NV + L+ L +
Sbjct: 224 VPDVYMYNQILFGLCKSGCSNKALTLFCNLKKRGLSLNVYSYTALVLGLCKEKMWADAYR 283
Query: 174 -----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ ++ LC GKI A+ + + ++G T ++L+ L
Sbjct: 284 ALEKMCDEECKPSVVTYTVIVNFLCRDGKIDAAMHVFRMACKNGCCLDSTICNVLLHAL 342
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 43/199 (21%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+ + + +F ++KK G + +V + L++ L E+ A +A
Sbjct: 238 CKSGCSNKALTLFCNLKKRGLSLNVYSYTALVLGLC--KEKMWA--------------DA 281
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y L + ++ KP V TYT I++ C+ G+ + AM + A + G + LL
Sbjct: 282 YRALEKMCDEECKPSVVTYTVIVNFLCRDGKIDAAMHVFRMACKNGCCLDSTICNVLLHA 341
Query: 168 L-----------------EMGHIPRTITFNNVIQALCGVGKI----------HKALLLLF 200
L E G +P T +++ G + KAL L+
Sbjct: 342 LCCEDRIPEARVIVDLMEEAGLVPDYFTISSLAAGFLKTGDVMTCQNFIRMVKKALALVS 401
Query: 201 LMYEHGKIPSRTSHDMLIK 219
M E G +PS T+++ ++K
Sbjct: 402 GMMERGLVPSTTTYNTILK 420
Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ EA ++ ++ GL PD +T +++ GF K G + M N R V + + +
Sbjct: 347 RIPEARVIVDLMEEAGLVPDYFTISSLAAGFLKTG---DVMTCQN--FIRMVKKALALVS 401
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+++R G +P T T+N +++ C + AL +L
Sbjct: 402 GMMER---GLVPSTTTYNTILKGFCMELDLQGALQML 435
>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 39/212 (18%)
Query: 12 FSVLLVDSPSRSPSAAESL-DLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTN 69
F V +P+R E + L P S +D +A + E ++F ++ G+
Sbjct: 180 FGWCRVRNPTRGMKVLEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGST 239
Query: 70 WS---VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
S + ++ ALV N R++E +++L ++ N G PDV T+
Sbjct: 240 MSSPTAKTYAIMIGALVRNN----------------RMDECFKLLEDMINSGCLPDVSTF 283
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186
+++G C G+ +EA L E + G+ P +T+N ++ L
Sbjct: 284 KELIEGMCSAGKIDEAYRFLQEMGNK------------------GYPPDIVTYNCFLKVL 325
Query: 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
C +AL L M E G PS +H+MLI
Sbjct: 326 CENKNSEEALRLYERMIEAGCFPSVQTHNMLI 357
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 20/124 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT------LIQLLQR---- 167
G PD +TY +D FC+ G NEA EL +G T + T +I L R
Sbjct: 202 GHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGALVRNNRM 261
Query: 168 ----------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+ G +P TF +I+ +C GKI +A L M G P +++
Sbjct: 262 DECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPPDIVTYNCF 321
Query: 218 IKKL 221
+K L
Sbjct: 322 LKVL 325
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 22/121 (18%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
E+A + VKN +KPD TY + G+C+V M++L E I
Sbjct: 154 AEDAEGLFKRVKNK-VKPDANTYNVMFFGWCRVRNPTRGMKVLEEMI------------- 199
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI---PSRTSHDMLIKK 220
++GH P + T+ I A C G +++A L M G P+ ++ ++I
Sbjct: 200 -----QLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIGA 254
Query: 221 L 221
L
Sbjct: 255 L 255
>gi|218196531|gb|EEC78958.1| hypothetical protein OsI_19424 [Oryza sativa Indica Group]
Length = 975
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 81/202 (40%), Gaps = 36/202 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLM----------ALVMLNEQDT---------AVK 93
L+E IFN +K G S +N L AL +L E T +
Sbjct: 491 LEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKYPKAALDLLREMQTNGHPPWIKNCTE 550
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
GRV EA + L + G PD+ TY+A M+G C G ++A+ L + +
Sbjct: 551 MVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKY 610
Query: 154 VTQNVVT---LIQLLQR--------------LEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+VV LI ++ LE G P +T+N +I C G+I KA+
Sbjct: 611 YLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAI 670
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
L M K P+ ++ LI
Sbjct: 671 SYLDKMVYEEKQPTVITYTSLI 692
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 37/185 (20%)
Query: 55 ERIDIFNSIKKD----GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110
+++D+ ++ KD G + FNDL+ L ++ R+EE Y +
Sbjct: 454 KKLDMALALTKDMISLGCKGKILMFNDLIHELCNMD----------------RLEEGYGI 497
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG---VTQNVVTLIQLL-- 165
+K+ GL P +TY ++ G C+ A++LL E G +N ++Q L
Sbjct: 498 FNQMKDLGLTPSEFTYNSLFYGICRRKYPKAALDLLREMQTNGHPPWIKNCTEMVQQLCF 557
Query: 166 ------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
L++G +P +T++ + +C G++ AL L + +P +
Sbjct: 558 SGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVA 617
Query: 214 HDMLI 218
H++LI
Sbjct: 618 HNILI 622
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+E+A L + + +P V TYT+++DGFC GR +EA++L E E+G N +
Sbjct: 663 TGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIA 722
Query: 161 LIQLLQRL-EMGHIPRTITF 179
+ L + G I +T+
Sbjct: 723 YTAFINGLRKCGRIETALTY 742
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 82 LVMLNEQDTAVKFFS---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
+V +Q T + + S GR +EA ++ ++ G P+ YTA ++G K GR
Sbjct: 676 MVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGR 735
Query: 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
A+ E + +G + +L+ + L
Sbjct: 736 IETALTYFEEMVTKGFELDTFSLLYFINFL 765
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 45/214 (21%)
Query: 16 LVDSPSRSPSAAESLDLKE-------NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
L+++ R+ E+ +E NP L V I K ++E ++I + +K G
Sbjct: 175 LINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAG 234
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
V +N ++ AL + G+V EA E+L K PD+ T+
Sbjct: 235 PVPDVITYNSIIHALCV----------------AGKVVEAAEIL---KTMSCSPDLVTFN 275
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC 187
++DGFCK G A+E+L E + +P IT+ ++ LC
Sbjct: 276 TLLDGFCKAGMLPRALEVLEEMCRENI------------------LPDVITYTILVNGLC 317
Query: 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
VG++ A LL + G IP ++ L+ L
Sbjct: 318 RVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGL 351
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+V+ A+ +L + G PDV YT+++DG CK G EA +L+ E RG VV
Sbjct: 319 VGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVM 378
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + + + +P T+N V+ L G I KA+ L+ +
Sbjct: 379 YSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLV 438
Query: 204 EHGKIPSRTSHDMLIKKL 221
G +P +++ LI L
Sbjct: 439 ARGYVPDVVTYNTLIDGL 456
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A ++ ++ G PDV TY ++DG CK R EA +L +E RG N VTL
Sbjct: 425 GSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTL 484
Query: 162 IQLLQRL--------------EMG---HIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM H P + + ++I LC ++ A ++L M
Sbjct: 485 GSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRG 544
Query: 205 HG 206
G
Sbjct: 545 QG 546
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 51/211 (24%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA 91
++ N ++ QA R ++ ++A +D F S+ D V FN L+ L D A
Sbjct: 69 IRGNCKAGQAMRALEFLRA------LDEF-SVAPD-----VYIFNVLIHGLFKDGNPDQA 116
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
VK F N +++ +KP++ TY ++ G CK G +A ELL E I
Sbjct: 117 VKLFEN----------------MESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIR 160
Query: 152 RG-------VTQNVVTLIQLLQRLE--------------MGHIPRTITFNNVIQALCGVG 190
+G VT N TLI R G P +T N ++ +C G
Sbjct: 161 KGGKSAPDIVTYN--TLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDG 218
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ +AL +L M G +P +++ +I L
Sbjct: 219 DVEEALEILDGMKLAGPVPDVITYNSIIHAL 249
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S + G V +A E+L + + + P ++TY ++ G K G ++A+ L+++ + RG
Sbjct: 384 SGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYV 443
Query: 156 QNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLL 198
+VVT L+ L EM G P +T +V+ LC VG++ A L
Sbjct: 444 PDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSL 503
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
+ M P+ + LI L
Sbjct: 504 VVEMSRKRHAPNVVVYTSLIDGL 526
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRV++A+ +++ + P+V YT+++DG CK R ++A +L+ +GV +
Sbjct: 494 VGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFA 553
Query: 161 LIQLLQRLEMG 171
+L+ + G
Sbjct: 554 YRKLIVSMSHG 564
>gi|242049502|ref|XP_002462495.1| hypothetical protein SORBIDRAFT_02g026770 [Sorghum bicolor]
gi|241925872|gb|EER99016.1| hypothetical protein SORBIDRAFT_02g026770 [Sorghum bicolor]
Length = 294
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 86/182 (47%), Gaps = 21/182 (11%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E DIF+ G + +V +N L+ ++++ A+K F + VG
Sbjct: 113 KVGRVVEAQDIFDLTVSIGVHPNVMVYNTLMDGYCLVHKMKKALKVFDAMVSVG------ 166
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++P+V TY+ +++G+CK+GR NE + L E + +G+ + ++ ++ + L
Sbjct: 167 ----------IEPNVVTYSTLVNGYCKIGRINEGLSLFTEMLHKGIEPSAISRVKEAKGL 216
Query: 169 -----EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
G +P +T+N ++ L G + +A + M G P+ + ++K L +
Sbjct: 217 FASISGSGLVPSVVTYNVMMTNLIKEGLVEEADRMFSFMENSGCDPNSRLLNHVVKDLMK 276
Query: 224 QP 225
P
Sbjct: 277 IP 278
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 18/98 (18%)
Query: 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180
P+V Y+ ++DGF K G N+A +L NE ++RG++ P +T+N
Sbjct: 10 PNVVAYSTVIDGFFKEGNVNKACDLFNEMVQRGIS------------------PNLVTYN 51
Query: 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+V+ ALC + +A +L M G P R +++ LI
Sbjct: 52 SVVHALCKARAVDRAEAILRPMVGKGVRPDRMTYNNLI 89
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V +A ++ + G+ P++ TY +++ CK + A +L + +GV + +T
Sbjct: 26 GNVNKACDLFNEMVQRGISPNLVTYNSVVHALCKARAVDRAEAILRPMVGKGVRPDRMTY 85
Query: 162 IQLLQ-RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L+ MG + ++I LC VG++ +A + L G P+ ++ L+
Sbjct: 86 NNLIYVDSSMGQWKEAVRSCSIINNLCKVGRVVEAQDIFDLTVSIGVHPNVMVYNTLM 143
>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 602
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 106/250 (42%), Gaps = 44/250 (17%)
Query: 16 LVDSPSRSPSAAESLDL--KENPRSLQAQRF-----VDKI-KASPLKERIDIFNSIKKDG 67
+V+ RS + + D+ K R+++A F +D + + + I +F ++ G
Sbjct: 199 IVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258
Query: 68 TNWSVSDFNDLLMALVMLNEQDTA---------------VKFFSNHLMV----GRVEEAY 108
SV +N L+ L + + V F+ L V G+++EA
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 318
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + G+ P++ TY +MDG+C R +EA +L+ + + ++VT L++
Sbjct: 319 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
M G + +T++ ++Q C GKI A L M HG +P
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDV 438
Query: 212 TSHDMLIKKL 221
++ +L+ L
Sbjct: 439 MTYGILLDGL 448
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V +A ++ + +G +PD+ TY +I++G C+ G ++ A ++L + ER V +V T
Sbjct: 172 GKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTY 231
Query: 162 ----------------IQLLQRLEMGHIPRT-ITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L + +E I + +T+N++++ LC GK + LLL M
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 291
Query: 205 HGKIPSRTSHDMLI 218
+P+ + ++L+
Sbjct: 292 REIVPNVITFNVLL 305
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+ M R+ EA ML + + PD+ T+T+++ G+C V R ++ M++ +RG+ N
Sbjct: 343 YCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVAN 402
Query: 158 VVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKAL 196
VT L+Q EM G +P +T+ ++ LC GK+ KAL
Sbjct: 403 AVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA---------------- 91
+K L+E +++ + G + ++ +N L+ M N A
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368
Query: 92 VKFFS---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
V F S + MV RV++ ++ N+ GL + TY+ ++ GFC+ G+ A EL E
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428
Query: 149 AIERGVTQNVVTLIQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGK 191
+ GV +V+T LL L + G + + + + +I+ +C GK
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK 488
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A L + G P+ ++ ++I L ++
Sbjct: 489 VEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKK 521
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
+FFS + + ++ +G+ ++YT +++ FC+ ++ A +L +
Sbjct: 93 RFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKV--- 149
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
+++G+ P T TFN +I LC GK+ KA++L+ M E+G P
Sbjct: 150 ---------------MKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMV 194
Query: 213 SHDMLI 218
+++ ++
Sbjct: 195 TYNSIV 200
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+A+ + ++ G+KP+V TYT ++ G CK G +EA LL + E G N T
Sbjct: 487 GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546
Query: 162 IQLLQ 166
L++
Sbjct: 547 NTLIR 551
>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
Length = 530
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +++ K+G D D+++ + + T H + ++EA ++ + + G
Sbjct: 328 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 387
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
P+V +Y +++G+C++ R ++AM LL + +G+ I T+T
Sbjct: 388 CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL------------------IADTVT 429
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+N +I LC VG++ A+ L M G+IP ++ +L+ L
Sbjct: 430 YNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 472
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA + +G +PDV TY +M+G CKVG ++ A+ LL +++ NV+
Sbjct: 196 GKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAY 255
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALC 187
++ L EM G P T+N++I ALC
Sbjct: 256 NTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALC 298
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG A +L ++ +P+V Y I+D CK + EA L +E I +G++ ++ T
Sbjct: 230 VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFT 289
Query: 161 LIQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E H+ P + F+ V+ ALC G I A ++ +M
Sbjct: 290 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMI 349
Query: 204 EHGKIPSRTSHDMLI 218
+ G P ++ L+
Sbjct: 350 KRGVEPDVVTYTALM 364
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+ A+ +L + G +PD T+ ++ G C G+ EA+ L ++ I G +VVT
Sbjct: 162 RLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYG 221
Query: 163 QLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L ++G+ P I +N +I +LC ++ +A L M
Sbjct: 222 TLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITK 281
Query: 206 GKIPSRTSHDMLIKKL 221
G P +++ LI L
Sbjct: 282 GISPDIFTYNSLIHAL 297
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 19/134 (14%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------------SNH 98
D+ + + K G V + L+ + +E D AVK F + +
Sbjct: 343 DVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGY 402
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
+ R+++A +L + GL D TY ++ G C VGR A+ L +E + G ++
Sbjct: 403 CQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDL 462
Query: 159 VTLIQLLQRLEMGH 172
VT LL L H
Sbjct: 463 VTYRILLDYLCKNH 476
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM------- 170
G+ PDVYT +++ FC + R A +L + ++ G + T L++ L +
Sbjct: 142 GIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEA 201
Query: 171 ----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
G P +T+ ++ LC VG A+ LL M + P+ +++ +I
Sbjct: 202 LHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDS 261
Query: 221 L--DQQ 224
L D+Q
Sbjct: 262 LCKDRQ 267
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 44/207 (21%)
Query: 21 SRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLM 80
+S ++A +LDL R ++ + IKAS ++ I + +S+ KDG+ F+D
Sbjct: 221 CKSGNSALALDL---FRKMEER----NIKASVVQYSI-VIDSLCKDGS------FDD--- 263
Query: 81 ALVMLNEQD---------TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
AL + NE + T G+ ++ +ML + + PDV T++A++D
Sbjct: 264 ALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALID 323
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191
F K G+ EA EL NE I RG+ P TIT+N++I C
Sbjct: 324 VFVKEGKLLEAKELYNEMITRGIA------------------PDTITYNSLIDGFCKENC 365
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+H+A + LM G P ++ +LI
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILI 392
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV++ + + + GL P+ TY ++ GFC+ G+ N A EL E + RGV +VVT
Sbjct: 400 RVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 459
Query: 162 ---------------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEH 205
+++ ++++ + I +N +I +C K+ A L + +
Sbjct: 460 ILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK 519
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P +++++I L ++
Sbjct: 520 GVKPDVVTYNVMIGGLCKK 538
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA +M + + G +PD+ TY+ +++ +CK R ++ M L E +G+
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL--------- 416
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IP TIT+N ++ C GK++ A L M G PS ++ +L+ L
Sbjct: 417 ---------IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 465
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 37/199 (18%)
Query: 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV 101
+R + I + + ID+F S+ + + DFN L A+ + D + F +
Sbjct: 40 ERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELN 99
Query: 102 GRVEEAYEMLMNVK-------------------NDGLKPDVYTYTAIMDGFCKVGRSNEA 142
G + Y M + + G +PD T++ +++GFC GR +EA
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 159
Query: 143 MELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ L++ + EM P +T + +I LC G++ +AL+L+ M
Sbjct: 160 VALVDRMV------------------EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 201
Query: 203 YEHGKIPSRTSHDMLIKKL 221
E+G P ++ ++ +L
Sbjct: 202 VEYGFQPDEVTYGPVLNRL 220
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ A E+ + + G+ P V TY ++DG C G N+A+E+ + + +T +
Sbjct: 434 GKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY 493
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ + + G P +T+N +I LC G + +A +L M E
Sbjct: 494 NIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553
Query: 205 HGKIPSRTSHDMLIK 219
G P ++++LI+
Sbjct: 554 DGCTPDDFTYNILIR 568
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A+ + ++ + G+KPDV TY ++ G CK G +EA L + E G T + T
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTY- 563
Query: 163 QLLQRLEMG 171
+L R +G
Sbjct: 564 NILIRAHLG 572
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA ++ + +PD+ T + +++G C GR +EA+ L++ +E G + VT
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213
Query: 162 ----------------IQLLQRLEMGHIPRTIT-FNNVIQALCGVGKIHKALLLLFLMYE 204
+ L +++E +I ++ ++ VI +LC G AL L M
Sbjct: 214 GPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEM 273
Query: 205 HGKIPSRTSHDMLIKKL 221
G ++ LI L
Sbjct: 274 KGIKADVVTYSSLIGGL 290
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 90 TAVKFFSNHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T F N LM GR+ +A + + G PDV TY+ ++ GF + ++A EL
Sbjct: 518 TTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFET 577
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
I RG N VT LL L E G P +T+ ++ C VGK
Sbjct: 578 MISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGK 637
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIK 219
I +A+ + M G P +++ L+K
Sbjct: 638 IEQAVEVFDEMVSKGHDPDVVAYNCLLK 665
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A+E+ + + G +P+ TY ++ G CK + +EA EL + +ERG + VT L
Sbjct: 569 DQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTL 628
Query: 165 L----------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L Q +E+ GH P + +N +++ GK +A L +M
Sbjct: 629 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQC 688
Query: 208 IPSRTSHDMLIKKLDQ 223
P SH+++I L +
Sbjct: 689 KPDTVSHNIMIDGLSK 704
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------------------NH 98
++F ++ G + +N LL L ++ D A + F
Sbjct: 573 ELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGF 632
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
VG++E+A E+ + + G PDV Y ++ GF + G+ EA +L + R +
Sbjct: 633 CNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDT 692
Query: 159 VT----------------LIQLLQRLEMGH--IPRTITFNNVIQALCGVGKIHKAL 196
V+ +++ +R+E H P +T+N++I LCG ++ +A+
Sbjct: 693 VSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAM 748
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 35/185 (18%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
E +F ++ K G + ++ +++A L D A K F +E A E +
Sbjct: 252 EASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLF--------LEMAVESKAPL 303
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--TLIQLLQRLEMGH 172
N +TA + G CK G+ +A E E + V LI+LL +E G
Sbjct: 304 NN-------VAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLL--IESGR 354
Query: 173 I----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
I P + T ++VIQ LC G++ AL LL M + G P +H M
Sbjct: 355 IDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSM 414
Query: 217 LIKKL 221
LI +L
Sbjct: 415 LINEL 419
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 22/138 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT- 160
GR+++A E + + ++P T +++ CK GR + A+ LL I+RG ++ T
Sbjct: 353 GRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATH 412
Query: 161 -----------LIQLLQRLEMGHIPRTI--------TFNNVIQALCGVGKIHKALLLLFL 201
IQ Q G + R I ++N+++ +LC K+H+A +
Sbjct: 413 SMLINELCKADKIQEAQEFLQG-MDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFST 471
Query: 202 MY-EHGKIPSRTSHDMLI 218
M E +P S+ +LI
Sbjct: 472 MVSERSFVPDVVSYSILI 489
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 18/140 (12%)
Query: 103 RVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
+V +A+ + V PDV +Y+ ++DGFCK+ A +L + I+ NV T
Sbjct: 461 KVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTY 520
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L L EM G P IT++ +I K +A L M
Sbjct: 521 NAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMIS 580
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P+ +++ L+ L ++
Sbjct: 581 RGCRPNAVTYNCLLHGLCKE 600
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 39/158 (24%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------SNHL 99
+++ +++F+ + G + V +N LL + A + F S+++
Sbjct: 638 IEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNI 697
Query: 100 MVG------RVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
M+ R+++A E+ ++ D G PD+ TY +++ G C R +EAM++ E
Sbjct: 698 MIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKE---- 753
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL-CGV 189
+ RL++ P FN +++A+ CG+
Sbjct: 754 ------------IDRLKLSPDPH--AFNVLLEAIKCGI 777
>gi|297790927|ref|XP_002863348.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309183|gb|EFH39607.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 477
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 21/122 (17%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------I 162
L PDV TYTA+++G+C G+ +EA +L E + N VT +
Sbjct: 196 LYPDVITYTAMINGYCNAGKIDEAWKLAKEMSKHDCVLNTVTYSRILEGVCKSGDMETAL 255
Query: 163 QLLQRLEM----GHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+LL +E G I P +T+ VIQ+ C +I +ALL+L M + G P+R + +L
Sbjct: 256 ELLAEMEKEDGGGLISPNAVTYTLVIQSFCEKKRIREALLVLDRMGDRGCTPNRVTASVL 315
Query: 218 IK 219
I+
Sbjct: 316 IQ 317
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 28/199 (14%)
Query: 21 SRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGT-NWSVSDFNDLL 79
+S ++A +LDL R ++ + IKAS ++ I + +S+ KDG+ + ++S FN++
Sbjct: 250 CKSGNSALALDL---FRKMEER----NIKASVVQYSI-VIDSLCKDGSFDDALSLFNEME 301
Query: 80 MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
M + + T G+ ++ +ML + + PDV T++A++D F K G+
Sbjct: 302 MKGIKADVV-TYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 360
Query: 140 NEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
EA EL NE I RG+ P TIT+N++I C +H+A +
Sbjct: 361 LEAKELYNEMITRGIA------------------PDTITYNSLIDGFCKENCLHEANQMF 402
Query: 200 FLMYEHGKIPSRTSHDMLI 218
LM G P ++ +LI
Sbjct: 403 DLMVSKGCEPDIVTYSILI 421
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV++ + + + GL P+ TY ++ GFC+ G+ N A EL E + RGV +VVT
Sbjct: 429 RVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 488
Query: 162 ---------------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEH 205
+++ ++++ + I +N +I +C K+ A L + +
Sbjct: 489 ILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK 548
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P +++++I L ++
Sbjct: 549 GVKPDVVTYNVMIGGLCKK 567
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA +M + + G +PD+ TY+ +++ +CK R ++ M L E +G+
Sbjct: 395 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL--------- 445
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IP TIT+N ++ C GK++ A L M G PS ++ +L+ L
Sbjct: 446 ---------IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 494
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 37/199 (18%)
Query: 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV 101
+R + I + + ID+F S+ + + DFN L A+ + D + F +
Sbjct: 69 ERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELN 128
Query: 102 GRVEEAYEMLMNVK-------------------NDGLKPDVYTYTAIMDGFCKVGRSNEA 142
G + Y M + + G +PD T++ +++GFC GR +EA
Sbjct: 129 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 188
Query: 143 MELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ L++ + EM P +T + +I LC G++ +AL+L+ M
Sbjct: 189 VALVDRMV------------------EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 230
Query: 203 YEHGKIPSRTSHDMLIKKL 221
E+G P ++ ++ +L
Sbjct: 231 VEYGFQPDEVTYGPVLNRL 249
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ A E+ + + G+ P V TY ++DG C G N+A+E+ + + +T +
Sbjct: 463 GKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY 522
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ + + G P +T+N +I LC G + +A +L M E
Sbjct: 523 NIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 582
Query: 205 HGKIPSRTSHDMLIK 219
G P ++++LI+
Sbjct: 583 DGCTPDDFTYNILIR 597
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A+ + ++ + G+KPDV TY ++ G CK G +EA L + E G T + T
Sbjct: 534 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTY- 592
Query: 163 QLLQRLEMG 171
+L R +G
Sbjct: 593 NILIRAHLG 601
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA ++ + +PD+ T + +++G C GR +EA+ L++ +E G + VT
Sbjct: 183 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 242
Query: 162 ----------------IQLLQRLEMGHIPRTIT-FNNVIQALCGVGKIHKALLLLFLMYE 204
+ L +++E +I ++ ++ VI +LC G AL L M
Sbjct: 243 GPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEM 302
Query: 205 HGKIPSRTSHDMLIKKL 221
G ++ LI L
Sbjct: 303 KGIKADVVTYSSLIGGL 319
>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
Length = 556
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+V+ A+ +L + G PDV YT+++DG CK G EA +L+ E R + +V+
Sbjct: 285 VGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVS 344
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+ +P T+N V+ L G I KA+ L+ + G +P +++ LI
Sbjct: 345 I---------NMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDG 395
Query: 221 L 221
L
Sbjct: 396 L 396
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 48/191 (25%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA 91
++ N ++ QA R ++ ++A +D F S+ D V FN L+ L D A
Sbjct: 69 IRGNCKAGQATRALEFLRA------LDEF-SVAPD-----VYIFNFLIHGLFKDGNPDQA 116
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
VK F N +++ + PD++TY ++ G CK G +A ELL E I
Sbjct: 117 VKLFEN----------------MESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIR 160
Query: 152 RG-------VTQN------------VVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGK 191
RG VT N V +++L +++ G P IT+N++I ALC G+
Sbjct: 161 RGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGR 220
Query: 192 IHKALLLLFLM 202
+ +A +L M
Sbjct: 221 VVEAAEILKTM 231
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A ++ ++ G PDV TY ++DG CK R EA +L +E
Sbjct: 365 GSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMA----------- 413
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+G P +T +V+ LC VG++ A L+ M P+ + LI L
Sbjct: 414 -------SLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGL 466
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 35/174 (20%)
Query: 64 KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123
++DG V +N LL LV Q K + + L + G P++
Sbjct: 19 EQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLL----------------HSGCSPNL 62
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQR 167
T+ ++ G CK G++ A+E L E V +V ++L +
Sbjct: 63 VTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFEN 122
Query: 168 LEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG--KIPSRTSHDMLI 218
+E + P T+N VI LC G + KA LL M G P +++ LI
Sbjct: 123 MESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLI 176
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
VGRV++A+ +++ + P+V YT+++DG CK R ++A +L+ +GV
Sbjct: 434 VGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVA 488
>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
Length = 613
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 89/193 (46%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA +E +D F+ +K+DG S +N L+ L GR+E+AY
Sbjct: 411 KAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGR----------------AGRLEDAY 454
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT---LIQLL 165
++ ++ G+ P+V T+ ++ C ++ A++LL + E+ ++ T L++L
Sbjct: 455 SVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLC 514
Query: 166 QRLEMGHI--------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ + I P T+ ++ LC GK+ ++ L L M G P +
Sbjct: 515 CKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEMVSKGFAPKQ 574
Query: 212 TSHDMLIKKLDQQ 224
+ D++++KL+++
Sbjct: 575 ETFDLVMEKLEKR 587
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
++EA + + +K G P V TYT++++ +C LL+E +R NVVT
Sbjct: 345 LKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTI 404
Query: 164 LLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L E G P +N++I L G++ A ++ M G
Sbjct: 405 LMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTG 464
Query: 207 KIPSRTSHDMLI 218
P+ T+ + LI
Sbjct: 465 IAPNVTTFNTLI 476
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 34/186 (18%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
AS E ID F+ + + G N LL DT K S V R ++
Sbjct: 273 ASRWTEAIDAFHKMDRFGVVKDTKAMNVLL---------DTLCKERS----VKRARGVFQ 319
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
L + PD ++ ++ G+CK EA++ + E + G + +VVT L++
Sbjct: 320 ELRGT----IPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYC 375
Query: 170 MGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
M P +T+ ++ AL G+ +AL + E G P +
Sbjct: 376 MEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDAS 435
Query: 213 SHDMLI 218
++ LI
Sbjct: 436 FYNSLI 441
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 18/127 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+H GRV E+ ++ + G+KPD+ TY+ ++DG+C G+ +EAM+LL+ + G+
Sbjct: 455 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLK- 513
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P T+T+ +I C + ++ AL+L M G P ++++
Sbjct: 514 -----------------PNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNI 556
Query: 217 LIKKLDQ 223
+++ L Q
Sbjct: 557 ILQGLFQ 563
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVV- 159
G+V+EA + ++ GL PD TY A++ CK GR +AM + I+ G++ N+V
Sbjct: 355 GKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 414
Query: 160 -TLIQ--------------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+LI +L+ L+ G TI FN++I + C G++ ++ L LM
Sbjct: 415 NSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR 474
Query: 205 HGKIPSRTSHDMLI 218
G P ++ LI
Sbjct: 475 IGVKPDIITYSTLI 488
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 21/149 (14%)
Query: 60 FNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115
FNSI K+G DL++ + + + T + + G+++EA ++L +
Sbjct: 449 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMV 508
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------- 168
+ GLKP+ TY +++G+CK+ R +A+ L E GV+ +++T +LQ L
Sbjct: 509 SVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTA 568
Query: 169 ----------EMGHIPRTITFNNVIQALC 187
E G T+N ++ LC
Sbjct: 569 AAKELYVRITESGTQIELSTYNIILHGLC 597
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 21/115 (18%)
Query: 103 RVEEAYE---MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
R +EA E M+ + + G PDV +YT +++GF K G S +A +E ++R ++
Sbjct: 173 RSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRIS---- 228
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
P +T++++I ALC + KA+ +L M ++G +P+ ++
Sbjct: 229 --------------PDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTY 269
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 22/140 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-----TQNV 158
+++A E+L ++ +G+ P+ TYT+IM G+C G+ EA+ L + GV ++
Sbjct: 247 MDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDI 306
Query: 159 VTLIQLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
T LLQ + G P +N +I A GK+ +A+L+
Sbjct: 307 ATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSK 366
Query: 202 MYEHGKIPSRTSHDMLIKKL 221
M + G P ++ +I L
Sbjct: 367 MRQQGLNPDAVTYGAVIGIL 386
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 85/222 (38%), Gaps = 29/222 (13%)
Query: 18 DSPSRSPSAAESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFN 76
DS + E LD + +P + + + K + + +++ S+ K+G + +
Sbjct: 211 DSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYT 270
Query: 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
++ + A+ F G V+ DGL+PD+ TY ++ G+
Sbjct: 271 SIMHGYCSSGQPKEAIGFLKKVRSDG-----------VEPDGLEPDIATYCTLLQGYATK 319
Query: 137 GRSNEAMELLNEAIERGV-----TQNVV------------TLIQLLQRLEMGHIPRTITF 179
G LL+ + G+ N++ ++ + + G P +T+
Sbjct: 320 GALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTY 379
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
VI LC G++ A+L M + G P ++ LI L
Sbjct: 380 GAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGL 421
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 83/202 (41%), Gaps = 36/202 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------------- 102
+F+ + + G + ++ L+ + + D A+K S + VG
Sbjct: 468 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYC 527
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----- 154
R+ +A + +++ G+ PD+ TY I+ G + R+ A EL E G
Sbjct: 528 KISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 587
Query: 155 TQNVV-----------TLIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLM 202
T N++ +++ Q L + + TFN +I AL VG+ +A L
Sbjct: 588 TYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAF 647
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+G +P+ ++ ++ + + Q
Sbjct: 648 SSNGLVPNYWTYRLMAENIIGQ 669
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 35/173 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E D+ + + G +V +N L+ + +E D AVK F +
Sbjct: 291 KEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV--------- 341
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++G P+V +Y +++G+CK+ R ++A L E ++ +
Sbjct: 342 -------HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL-------------- 380
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IP T+T+N ++ C VG++ A+ L M HG+IP ++ +L+ L
Sbjct: 381 ----IPNTVTYNTLMHX-CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYL 428
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG A +L +++ +PDV YT+I+D CK + EA L ++ + +G++ ++ T
Sbjct: 187 VGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFT 246
Query: 161 LIQLLQRL----EMGHI-------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L E H+ P + F+ V+ ALC GKI +A ++ +M
Sbjct: 247 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMI 306
Query: 204 EHGKIPSRTSHDMLI 218
G P+ +++ L+
Sbjct: 307 IRGVEPNVVTYNALM 321
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 39/241 (16%)
Query: 20 PSRSPSAAESLDLKENP--RSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFN 76
P SP + L P SL RF K + + L + + FN + S DFN
Sbjct: 14 PCSSPPGFGTCVLSLPPYFSSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFN 73
Query: 77 DLLMALVMLNEQDTAVKF-------------------FSNHLMVGRVEEAYEMLMNVKND 117
LL ++ + T ++ + R+ A+ +L +
Sbjct: 74 RLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKL 133
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL---------------- 161
G +PD T+T ++ G C G+ +A+ L ++ I G NVVT
Sbjct: 134 GHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAA 193
Query: 162 IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
I+LL+ +E G+ P + + ++I +LC ++ +A L M G P ++ LI
Sbjct: 194 IRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHS 253
Query: 221 L 221
L
Sbjct: 254 L 254
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E A ++ N+ + GL+P+V TYT +++G C+ G +EA +L E G +
Sbjct: 467 GELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCS------ 520
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK-- 219
P T+N + Q L + +A+ LL M G ++ +L++
Sbjct: 521 ------------PDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEML 568
Query: 220 ---KLDQ 223
KLDQ
Sbjct: 569 CDDKLDQ 575
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 35/208 (16%)
Query: 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS-------------- 96
S + E + +F+++ +G +V +N L+ + D A F
Sbjct: 328 SEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTY 387
Query: 97 NHLM----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL----NE 148
N LM VGR+++A + + G PD+ TY ++D CK +EAM LL
Sbjct: 388 NTLMHXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGS 447
Query: 149 AIERGVTQNVVTLIQLLQRLEM-------------GHIPRTITFNNVIQALCGVGKIHKA 195
++ + + + + + E+ G P T+ +I LC G + +A
Sbjct: 448 NMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEA 507
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
L M +G P +++ + + L Q
Sbjct: 508 NKLFMEMDGNGCSPDGCTYNTITQGLLQ 535
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A L+ DIF+++ G +V + ++ L G ++EA
Sbjct: 465 RAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRR----------------GLLDEAN 508
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
++ M + +G PD TY I G + + A++LL E + RG + +V T L++ L
Sbjct: 509 KLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEML 568
>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
Length = 479
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++AY++ +K G KPD TY ++ G C R +EA +LL +E G
Sbjct: 186 KVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQ------- 238
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P ITF +I+ LC +I +A +L M + G P +H +L+ KL
Sbjct: 239 -----------PDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKL 286
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A + +++ G+ P TYT ++D FCK+ + A LL R + V +
Sbjct: 115 GRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSY 174
Query: 162 I----------------QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
QL + +++ G P +T+N +I LC ++H+A LL +M E
Sbjct: 175 CSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVE 234
Query: 205 HGKIPSRTSHDMLIKKL 221
+G P + + LI+ L
Sbjct: 235 NGFQPDKITFTALIEGL 251
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A + + + L PDV+TY ++D CK R + A+E E
Sbjct: 49 GKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE---------- 98
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +T+N ++ LC G++ +A L M G PS ++ LI
Sbjct: 99 ------------PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLI 143
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
AY + G++PD+ Y ++DGFCK R + A +++ + G+ N+V
Sbjct: 362 RAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIV------ 415
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+N ++ C GK+ LL M G+ P + L+ L
Sbjct: 416 ------------TYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGL 459
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+H G+VE E+L + + G +PDV T++ ++ G VG+++ A LN A+ +G
Sbjct: 422 GHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFLNLAMSQG 479
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++ A +M+ + GL P++ TY ++ C+ G+ ELL+ + RG +V T
Sbjct: 394 RLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWS 453
Query: 163 QLLQRLEM-GHIPRTITFNNV 182
L+ L M G +F N+
Sbjct: 454 TLVAGLFMVGQADAAYSFLNL 474
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+A E++ ++ G++PD+ TY+AIMDG+C G+ + A + N ++G+ N+ +
Sbjct: 287 GKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSY 346
Query: 162 ----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+QL + + G P T+T++ ++ L VG+I A + M
Sbjct: 347 SILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLR 406
Query: 205 HGKIPSRTSHDMLI 218
G P H L+
Sbjct: 407 VGPTPDICLHSTLL 420
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 41/207 (19%)
Query: 53 LKERIDIFNSIK----KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS----------NH 98
L+ RID S+ K G ++V FN LL L N+ AV F N
Sbjct: 109 LRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNE 168
Query: 99 LMVGRV----------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+M G V E+ +L ++ KPDV TY+ ++D CK + A+ LLNE
Sbjct: 169 VMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNE 228
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EMGHI---PRTITFNNVIQALCGVGK 191
++ + N+ T L+ L EM ++ P TF+ +I LC GK
Sbjct: 229 MKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGK 288
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A ++ M E G P ++ ++
Sbjct: 289 VEDADEVMRHMIEKGVEPDIITYSAIM 315
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 22/152 (14%)
Query: 78 LLMALVMLNEQDTAVKFFS---NHLMVG-RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
LL + + N +DT + F++ N L RV EA+ + + + GL PDV TY ++ GF
Sbjct: 434 LLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGF 493
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193
C+ G +E +L + + G N IT+N ++Q KI
Sbjct: 494 CREGLFDEVKGILRKMEDNGCPAN------------------NITYNVIMQGFFRSNKIS 535
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225
+ + + M G T+ +LI L + P
Sbjct: 536 EIVSFMKEMAGRGFSFDATTTGVLINVLKENP 567
>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 459
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GR+EEA + + +G+ PDV T+ ++ C G A+ LL +A RG+ ++ T
Sbjct: 265 AGRLEEAKAFALRITKEGVLPDVATFNSLAQALCDAGDVEFAVGLLADASSRGMCPDIST 324
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+L +E GH P + +++ALC G+ A M
Sbjct: 325 YKVMLPAVAKAGRIEEAFRLFYAAIEDGHRPFPSLYAAIVKALCKAGRFADAFAFFGDMK 384
Query: 204 EHGKIPSRTSHDMLIK 219
G P+R + ML+K
Sbjct: 385 SKGHPPNRPVYVMLVK 400
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 33/182 (18%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113
++ +++FN + G + +N LL AL +N G AY++L
Sbjct: 164 EQAVEVFNRLPHFGCPQTTEVYNALLDALC------------AN----GNFAGAYKLLRR 207
Query: 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV------VTLIQLLQR 167
+ G+ PD T++ ++D +C G+ EA L++ RG V V + R
Sbjct: 208 MARKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMATRGFRPPVRGRDLLVDGLVRAGR 267
Query: 168 LE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
LE G +P TFN++ QALC G + A+ LL G P +++ +
Sbjct: 268 LEEAKAFALRITKEGVLPDVATFNSLAQALCDAGDVEFAVGLLADASSRGMCPDISTYKV 327
Query: 217 LI 218
++
Sbjct: 328 ML 329
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 69/180 (38%), Gaps = 36/180 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------- 98
++A L+E I K+G V+ FN L AL + + AV ++
Sbjct: 263 VRAGRLEEAKAFALRITKEGVLPDVATFNSLAQALCDAGDVEFAVGLLADASSRGMCPDI 322
Query: 99 ----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
GR+EEA+ + DG +P Y AI+ CK GR +A +
Sbjct: 323 STYKVMLPAVAKAGRIEEAFRLFYAAIEDGHRPFPSLYAAIVKALCKAGRFADAFAFFGD 382
Query: 149 AIERGVTQN---VVTLIQ--------------LLQRLEMGHIPRTITFNNVIQALCGVGK 191
+G N V L++ LL+ E G PR TFN V+ L +GK
Sbjct: 383 MKSKGHPPNRPVYVMLVKMCVRGGRFLDAANYLLEMSEAGFAPRAPTFNVVVDGLRHLGK 442
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
E+A E+ + + G Y A++D C G A +LL +GV
Sbjct: 163 AEQAVEVFNRLPHFGCPQTTEVYNALLDALCANGNFAGAYKLLRRMARKGVA-------- 214
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P TF+ ++ A C GK+ +A L M G P D+L+ L
Sbjct: 215 ----------PDRATFSTLVDAWCASGKLREAQAFLDDMATRGFRPPVRGRDLLVDGL 262
>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
Length = 1147
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG +E+A E + GL PD TYT ++ G+ + GR A +L +E + + ++ +V+T
Sbjct: 564 VGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVIT 623
Query: 161 LIQLLQ------RLEM-----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ RLE G P +T N ++ +C G I +A L M
Sbjct: 624 YFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKME 683
Query: 204 EHGKIPSRTSHDMLIKK 220
E G P++ S+ +LI K
Sbjct: 684 EEGISPNKYSYTILISK 700
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H GR+E+A++ +K G++P+V T+ A++ G CK G +EA L + E G++
Sbjct: 630 GHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGIS- 688
Query: 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216
P ++ +I C + K + + L M + P +H
Sbjct: 689 -----------------PNKYSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPDGYTHRA 731
Query: 217 LIKKLDQ 223
L K L++
Sbjct: 732 LFKHLEK 738
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 34/190 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
IK E +F+ +K N S+ +N L+ L G +E A
Sbjct: 421 IKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCE----------------SGNLEGA 464
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLLQ 166
+ + + + PDV TYT ++ GF K G + A E+ +E + +G+ + +
Sbjct: 465 QRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVG 524
Query: 167 RLEMG-----------------HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
L +G H P +N I LC VG + KA+ ++ G +P
Sbjct: 525 ELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVP 584
Query: 210 SRTSHDMLIK 219
++ +I+
Sbjct: 585 DHVTYTTVIR 594
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA L++ +KK G +V N LL + G ++EAY
Sbjct: 633 KAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCK----------------AGNIDEAY 676
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
L ++ +G+ P+ Y+YT ++ C + + E ++L E +++ + + T L + L
Sbjct: 677 RYLCKMEEEGISPNKYSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPDGYTHRALFKHL 736
Query: 169 EMGH 172
E H
Sbjct: 737 EKDH 740
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++EEA +++ G Y++ +++G+CK G +EA + +E + G+
Sbjct: 323 GKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGI------- 375
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
P T T+N I+ALC G+I A LL
Sbjct: 376 -----------YPTTSTYNIYIRALCEFGRIDDARELL 402
>gi|222629051|gb|EEE61183.1| hypothetical protein OsJ_15176 [Oryza sativa Japonica Group]
Length = 545
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 63 IKK--DGTNWSVS-DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119
IKK G+N+ ++ DL+++L A S L G E AYE+ M + N
Sbjct: 164 IKKAVSGSNFELALKVFDLMLSLCYFPTLPIANAIVSILLKSGSAEIAYEVFMVLVNRKF 223
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI------ 173
PDVY Y I+ G CK G SN+A+ L +RG++ NV + L+ L +
Sbjct: 224 VPDVYMYNQILFGLCKSGCSNKALTLFCNLKKRGLSLNVYSYTALVLGLCKEKMWADAYR 283
Query: 174 -----------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ ++ LC GKI A+ + + ++G T ++L+ L
Sbjct: 284 ALEKMCDEECKPSVVTYTVIVNFLCRDGKIDAAMHVFRMACKNGCCLDSTICNVLLHAL 342
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 86/224 (38%), Gaps = 68/224 (30%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K+ + + +F ++KK G + +V + L++ L E+ A +A
Sbjct: 238 CKSGCSNKALTLFCNLKKRGLSLNVYSYTALVLGLC--KEKMWA--------------DA 281
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y L + ++ KP V TYT I++ C+ G+ + AM + A + G + LL
Sbjct: 282 YRALEKMCDEECKPSVVTYTVIVNFLCRDGKIDAAMHVFRMACKNGCCLDSTICNVLLHA 341
Query: 168 L-----------------EMGHIPR----------------------------------- 175
L E G +P
Sbjct: 342 LCCEDRIPEARVIVDLMEEAGLVPDYFTISSLAAGFLKTGDVMTCQNFIRMVCNRSNHVD 401
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
IT+N + +LC G++ KAL L+ M E G +PS T+++ ++K
Sbjct: 402 IITWNIYLHSLCCDGQVKKALALVSGMMERGLVPSTTTYNTILK 445
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + + +++ S+ K+G + +N ++ + G+ +EA
Sbjct: 246 KAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV----------------HGYCSSGQPKEAI 289
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
L + +DG++PDV TY ++MD CK GR EA ++ + +RG+ + T LLQ
Sbjct: 290 GFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349
Query: 168 ------LEM----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+EM G P F+ +I A GK+ +A+L+ M + G P
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409
Query: 212 TSHDMLIKKL 221
++ +I L
Sbjct: 410 VTYGTVIGIL 419
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 103 RVEEAYEMLMNVKNDG--LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
R +EA E+L + +DG PDV +YT +++GF K G ++A +E ++RG+ NVVT
Sbjct: 177 RSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVT 236
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L + G +P T+N+++ C G+ +A+ L M+
Sbjct: 237 YSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMH 296
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P +++ L+ L
Sbjct: 297 SDGVEPDVVTYNSLMDYL 314
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 59 IFNSI----KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114
FNSI K+G DL++ + + + T + + G+++EA ++L ++
Sbjct: 481 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 540
Query: 115 KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+ G+KPD TY +++G+CK+ R +A+ L E GV+ +++T +LQ L
Sbjct: 541 VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGL 594
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 21/208 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDT 90
L +N R +A++ D + LK I + ++ + T ++ + + LL +V
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373
Query: 91 AVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
F + G+V++A + ++ GL PD TY ++ CK GR +AM
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433
Query: 148 EAI-ERGVTQNVV--TLIQ--------------LLQRLEMGHIPRTITFNNVIQALCGVG 190
+ I ER N+V +LI +L+ L+ G TI FN++I + C G
Sbjct: 434 QMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEG 493
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ ++ L LM G P ++ LI
Sbjct: 494 RVIESEKLFDLMVRIGVKPDIITYSTLI 521
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +++AY + + G+ P+V TY++I+ CK ++AME+L ++ GV N T
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L+++ G P +T+N+++ LC G+ +A + M +
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332
Query: 205 HGKIPSRTSHDMLIK 219
G P T++ L++
Sbjct: 333 RGLKPEITTYGTLLQ 347
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------- 98
+++ I + GT +S +N +L L N D A++ F N
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
L VGR +EA ++ + +GL PDV TY+ + + + G E +L E G T N
Sbjct: 665 LKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724
Query: 159 VTLIQLLQR-LEMGHIPRTITF 179
L ++++ L+ G I R T+
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTY 746
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 17/105 (16%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ + L NV G + D +T ++ G C R+++AM++ + R +TQ
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI----VLRRMTQ----- 155
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+G IP ++N +++ LC + +AL LL +M + G
Sbjct: 156 --------LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG 192
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 36/202 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------------- 102
+F+ + + G + ++ L+ + + D A K ++ + VG
Sbjct: 501 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYC 560
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----- 154
R+E+A + +++ G+ PD+ TY I+ G + R+ A EL E G
Sbjct: 561 KISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELS 620
Query: 155 TQNVV-----------TLIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLM 202
T N++ +++ Q L + + T TFN +I AL VG+ +A L +
Sbjct: 621 TYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAAL 680
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+G +P ++ ++ + L +Q
Sbjct: 681 SANGLVPDVRTYSLMAENLIEQ 702
>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
Length = 1031
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVT 160
G++ A + + LKP V TYTA++DG+C+ GR++EA +L E GV + V
Sbjct: 348 GKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSK 407
Query: 161 LIQLLQ-RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
Q+L+ L G P IT++ +I +C +G IH+ +L M + G +P+ + L+
Sbjct: 408 AKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLV 466
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 22/166 (13%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----RVEEAYEMLM 112
I IFN + + SV+ + L+ D A + + G V +A ++L
Sbjct: 354 IYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILK 413
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172
+ DG+ PDV TY+A+++G CK+G +E E+L+ + GV
Sbjct: 414 CMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGV------------------ 455
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+P + + ++ C G +AL +Y G + + H+ L+
Sbjct: 456 LPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALL 501
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA+ + N+ G PD+ TY +++ G C+ G +A E + +E+ + TL
Sbjct: 543 GNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTL 602
Query: 162 IQLL----------QRLEMGH-------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
LL + L++ +P T T+ ++ C GKI AL+LL +M E
Sbjct: 603 NTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMMLE 662
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P ++ L+ L
Sbjct: 663 KGLVPDTIAYTCLLNGL 679
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++EA ++ + + PD YTYT ++DGFCK G+ A+ LL +E+G+ + +
Sbjct: 613 GTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAY 672
Query: 162 IQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
LL L + G I +N+++ G+I++ L+ M+
Sbjct: 673 TCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMH 732
Query: 204 EHGKIPSRTSHDMLI 218
E+ PS S+++L+
Sbjct: 733 ENEVYPSSASYNILM 747
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR + A +L +++ +G++ D+YTY ++D CK+ RS A LL E +T
Sbjct: 278 GRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLT------ 331
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P ++N +I G GKI+ A+ + M PS ++ LI
Sbjct: 332 ------------PDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALI 376
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 24/159 (15%)
Query: 14 VLLVDSPSRSPSAAESLDLKENPRSL--------QAQRFVDKIKASPLKERIDIFNSIKK 65
+ L+++ R + +LKE+ ++L ++ K ++E I +F+SI +
Sbjct: 816 IALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMR 875
Query: 66 DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYT 125
G +++ F L+ L K F ++++A+ + +++ GLK DV T
Sbjct: 876 AGMVPTIATFTTLMHGLC---------KEF-------KIDDAFHLKQLMESCGLKVDVVT 919
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
Y ++ G C +A++L E +G+ N+ T I L
Sbjct: 920 YNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITL 958
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 38/205 (18%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM------- 100
IK L + ++ + K+G + L+ L + AVKF ++
Sbjct: 751 IKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQP 810
Query: 101 --------------VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
VG ++ A+E+ ++K G+ P ++I+ G CK G+ EA+ +
Sbjct: 811 KHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVF 870
Query: 147 NEAIERGVTQNVVTLIQLLQRL-------EMGHIPR----------TITFNNVIQALCGV 189
+ + G+ + T L+ L + H+ + +T+N +I LC
Sbjct: 871 SSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNK 930
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSH 214
I AL L M G +P+ T++
Sbjct: 931 KCICDALDLYEEMKSKGLLPNITTY 955
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI--ERGVT---Q 156
G++ + ++ +G+KPD TY ++ G C+ G A++ L + + E G+
Sbjct: 754 GQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQPKHT 813
Query: 157 NVVTLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ + LI R+ +G +P + +++++ LC GK+ +A+++ +
Sbjct: 814 HYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSI 873
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
G +P+ + L+ L ++
Sbjct: 874 MRAGMVPTIATFTTLMHGLCKE 895
>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++ EA M +K+ G+ P++YTY +MDG+CK +A+ L ++ G+ NVVT
Sbjct: 236 KLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFG 295
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ Q + G +P + FN++I G +A LL M +
Sbjct: 296 ILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKF 355
Query: 206 GKIPSRTSHDMLIK 219
P ++ +LIK
Sbjct: 356 KISPDVFTYSILIK 369
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 37/167 (22%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
K + +K+ + ++ + DG +V F L+ AL + E A +FF
Sbjct: 268 KTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVV 327
Query: 97 --NHLM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ G EA ++L+ ++ + PDV+TY+ ++ C++G EA ++L
Sbjct: 328 VFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRM 387
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ GV N ++ +N++I C G + KAL
Sbjct: 388 EKEGVPAN------------------SVVYNSLIDGYCKEGNMEKAL 416
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 34/197 (17%)
Query: 59 IFNSIKK-DGTNWSVSDFNDLLMALVMLNEQDTAVKFF-----------SNHLMVGRVEE 106
+FN++ + G+ ++ S F L++A + D A++ + N L+ G +++
Sbjct: 105 VFNALSQLRGSKFNPSVFGVLIIAFSEVGLVDEALRVYLKVGAFPAVQACNALLNGLLKK 164
Query: 107 A-----YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
+ +E+ N+ + L P V TY ++D C+ G A L++E +++G+ VV
Sbjct: 165 SSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIY 224
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L + G P T+N ++ C + +AL L M +
Sbjct: 225 TTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLD 284
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ + +LI L
Sbjct: 285 DGLQPNVVTFGILIDAL 301
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNWS--VSDFNDLLMALVMLNEQDTAVKF-- 94
L A+RF ++ + + +FNS+ DG + + S+ DLL+ + +
Sbjct: 308 LAARRFFVQMAKFGVVPNVVVFNSLI-DGYSKAGNCSEATDLLLEMEKFKISPDVFTYSI 366
Query: 95 -FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
N +G VEEA ++L ++ +G+ + Y +++DG+CK G +A+E+
Sbjct: 367 LIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIF 419
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 18/153 (11%)
Query: 16 LVDSPSRSPSAAESLDL-------KENPRSLQAQRFV-DKIKASPLKERIDIFNSIKKDG 67
L+D S++ + +E+ DL K +P + + + ++E DI ++K+G
Sbjct: 332 LIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEG 391
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
+ +N L+ + A++ F +A + +++ +GL+PD Y
Sbjct: 392 VPANSVVYNSLIDGYCKEGNMEKALEIF----------KATKFFSDMRRNGLRPDALAYA 441
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
++ G + M L + I+ G+ N VT
Sbjct: 442 VMLQGHLNAKHMADVMMLHADMIKMGIVPNEVT 474
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,275,922,958
Number of Sequences: 23463169
Number of extensions: 123072860
Number of successful extensions: 427504
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3866
Number of HSP's successfully gapped in prelim test: 1109
Number of HSP's that attempted gapping in prelim test: 374623
Number of HSP's gapped (non-prelim): 31101
length of query: 225
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 88
effective length of database: 9,144,741,214
effective search space: 804737226832
effective search space used: 804737226832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)