BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045820
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|B Chain B, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|C Chain C, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
pdb|3MEQ|D Chain D, Crystal Structure Of Alcohol Dehydrogenase From Brucella
Mel
Length = 365
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 16/119 (13%)
Query: 87 EQDTAVK----FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK---VGRS 139
E D VK F H VG V + +VK + YTA G C+ G
Sbjct: 71 EGDWPVKPNPPFIPGHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTAC--GHCRHCLGGWE 128
Query: 140 NEAMELLNEA--IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
E LN + G + VV + GH+P+ I FN + LC ++K L
Sbjct: 129 TLCEEQLNTGYSVNGGFAEYVVADPNFV-----GHLPKNIDFNEIAPVLCAGVTVYKGL 182
>pdb|3QDK|A Chain A, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|B Chain B, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|C Chain C, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|D Chain D, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
Length = 572
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTY----TAIMDGFCKVGRSNEAMELLNEAIERG 153
H+++G E+ E + V DG+ P Y +A+ D F + + +EA E+G
Sbjct: 300 HMLLGEKEQEVEGMCGVVEDGIIPGYLGYEAGQSAVGDIFAWFVKHGVSAATFDEAQEKG 359
Query: 154 VTQNVVTLIQ 163
V NV L++
Sbjct: 360 V--NVHALLE 367
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 140 NEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
N A+E +A E +V++ Q ++ GHI ++ + N+ G GKI +A +L
Sbjct: 53 NAALEAQKKAAEATDVPKLVSVQQAIKFNGGGHINHSLFWKNLAPEKSGGGKIDQAPVL 111
>pdb|1WUF|A Chain A, Crystal Structure Of Protein Gi:16801725, Member Of
Enolase Superfamily From Listeria Innocua Clip11262
pdb|1WUF|B Chain B, Crystal Structure Of Protein Gi:16801725, Member Of
Enolase Superfamily From Listeria Innocua Clip11262
Length = 393
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 128 AIMDGFCK---------VGRSNEAMELLNEAIERGVTQNVVTLIQLL-QRLEMGH--IPR 175
A+ D F K +G + E++++ + G+ QNV TL+QL+ Q ++ G+ +
Sbjct: 126 AVWDAFAKMEKRSLAKMIGATKESIKV---GVSIGLQQNVETLLQLVNQYVDQGYERVKL 182
Query: 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
I N IQ V + K+ L LM + +R +L+K+LDQ
Sbjct: 183 KIAPNKDIQF---VEAVRKSFPKLSLMADANSAYNREDF-LLLKELDQ 226
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 22/159 (13%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMAL---VMLNEQDTAVKFFSNHLMVGRVEEAYE 109
+KE DI+ S G N++V ND L ++ +QD+A+ N L + + +E +
Sbjct: 12 MKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALH---NDLQILKEKEGAD 68
Query: 110 MLM-------NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE-------AIERGVT 155
++ N D P V + ++ G +G MELL + +IE +
Sbjct: 69 FILLNFSFKDNFPFD--PPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIM 126
Query: 156 QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
Q TL++ R++ G + Q+ + +IH+
Sbjct: 127 QISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHE 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,165,177
Number of Sequences: 62578
Number of extensions: 227451
Number of successful extensions: 717
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 10
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)