BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045820
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ +EM ++ DG+ P++YTY +M+ CK GR+ +A ++ +E ERGV+ N+VT
Sbjct: 247 GVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTY 306
Query: 162 IQLLQRL--EM---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L EM G P IT+N +I CGVGK+ KAL L +
Sbjct: 307 NTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS 366
Query: 205 HGKIPSRTSHDMLI 218
G PS ++++L+
Sbjct: 367 RGLSPSLVTYNILV 380
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 36/201 (17%)
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVM---LNEQDTAV----------------KF 94
K+ +F+ +++ G + ++ +N L+ L LNE + V
Sbjct: 285 KDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTL 344
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
VG++ +A + ++K+ GL P + TY ++ GFC+ G ++ A +++ E ERG+
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGI 404
Query: 155 TQNVVTL----------------IQL-LQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
+ VT IQL L E+G +P T++ +I C G++++A
Sbjct: 405 KPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASR 464
Query: 198 LLFLMYEHGKIPSRTSHDMLI 218
L M E P+ ++ +I
Sbjct: 465 LFKSMVEKNCEPNEVIYNTMI 485
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 35/212 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV----------MLNEQDTAV--KFF 95
+++ L I FN + +G + FN LL +V NE + V +
Sbjct: 105 VQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVY 164
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
S +++ G +E+++++L+ + G P+V YT ++DG CK G +A +L E
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
Query: 150 IERGVTQNVVTLIQLL----------QRLEM-------GHIPRTITFNNVIQALCGVGKI 192
+ G+ N T L+ Q EM G P T+N V+ LC G+
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRT 284
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A + M E G + +++ LI L ++
Sbjct: 285 KDAFQVFDEMRERGVSCNIVTYNTLIGGLCRE 316
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 97 NHLMVGRVEE-----AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
N +++G +E A ++L ++ L P+V +Y +++ CK +S EA L+ + I+
Sbjct: 482 NTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMID 541
Query: 152 RGV--TQNVVTLI 162
G+ + ++++LI
Sbjct: 542 SGIDPSTSILSLI 554
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 33/191 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+ L++ +++ N +K G +WS+ + L+ A G+++EA
Sbjct: 188 CEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCK----------------AGKMDEA 231
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ- 166
L +K GL+ D+ YT+++ GFC G + L +E +ERG + +T L++
Sbjct: 232 MGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRG 291
Query: 167 ----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+E G P T+ +I LCGVGK +AL LL LM E + P+
Sbjct: 292 FCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPN 351
Query: 211 RTSHDMLIKKL 221
+++++I KL
Sbjct: 352 AVTYNIIINKL 362
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 23/145 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-------- 152
+G+++EA E+ + G++P+VYTYT ++DG C VG++ EA++LLN IE+
Sbjct: 295 LGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVT 354
Query: 153 -----------GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
G+ + V +++L+++ P IT+N ++ LC G + +A LL+L
Sbjct: 355 YNIIINKLCKDGLVADAVEIVELMKKRRTR--PDNITYNILLGGLCAKGDLDEASKLLYL 412
Query: 202 MYEHGKI--PSRTSHDMLIKKLDQQ 224
M + P S++ LI L ++
Sbjct: 413 MLKDSSYTDPDVISYNALIHGLCKE 437
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL---- 161
+A +L ++ + L PDV++Y ++ GFC+ +A+EL NE G + ++VT
Sbjct: 160 KAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILI 219
Query: 162 ------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
+ L+ ++ MG + + ++I+ C G++ + L + E G
Sbjct: 220 DAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDS 279
Query: 209 PSRTSHDMLIK 219
P +++ LI+
Sbjct: 280 PCAITYNTLIR 290
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 74 DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133
D DLL+ + ++ T ++ L G V +A E+ + + + + TYTA++DGF
Sbjct: 445 DIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504
Query: 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193
CK G N A LL + V+ +Q P +N ++ +LC G +
Sbjct: 505 CKTGMLNVAKGLL--------CKMRVSELQ----------PSVFDYNCLLSSLCKEGSLD 546
Query: 194 KALLLLFLMYEHGKIPSRTSHDMLI 218
+A L M P S +++I
Sbjct: 547 QAWRLFEEMQRDNNFPDVVSFNIMI 571
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 19/102 (18%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFS-------------------NHLMVGRVEEAYEML 111
SV D+N LL +L D A + F L G ++ A +L
Sbjct: 528 SVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLL 587
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + GL PD++TY+ +++ F K+G +EA+ ++ ++ G
Sbjct: 588 VGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSG 629
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 32/209 (15%)
Query: 34 ENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAV 92
E P ++ ++K+ K + + ++I +KK T +N LL L + D A
Sbjct: 348 EEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEAS 407
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
K +LM+ + +Y PDV +Y A++ G CK R ++A+++ + +E+
Sbjct: 408 KLL--YLMLK--DSSYT----------DPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453
Query: 153 -GVTQNVVTLIQLLQRLEMGHIPRTI----------------TFNNVIQALCGVGKIHKA 195
G V T I L L+ G + + + T+ +I C G ++ A
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
LL M PS ++ L+ L ++
Sbjct: 514 KGLLCKMRVSELQPSVFDYNCLLSSLCKE 542
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V A E+L +++N G KP+VY+YT ++DGFCK+G+ +EA +LNE G+ N V
Sbjct: 403 GLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGF 462
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EM G P TFN++I LC V +I AL LL M
Sbjct: 463 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 522
Query: 205 HGKIPSRTSHDMLI 218
G + + +++ LI
Sbjct: 523 EGVVANTVTYNTLI 536
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K + E ++ N + DG + FN L+ A F H R+ EA
Sbjct: 436 KLGKIDEAYNVLNEMSADGLKPNTVGFNCLISA------------FCKEH----RIPEAV 479
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
E+ + G KPDVYT+ +++ G C+V A+ LL + I GV N VT L+
Sbjct: 480 EIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAF 539
Query: 168 LEMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
L G I IT+N++I+ LC G++ KA L M G PS
Sbjct: 540 LRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSN 599
Query: 212 TSHDMLIKKL 221
S ++LI L
Sbjct: 600 ISCNILINGL 609
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 39/197 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------ 95
++ +KE + N + G+ +N L+ L E D A F
Sbjct: 540 LRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSN 599
Query: 96 -SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
S ++++ G VEEA E + G PD+ T+ ++++G C+ GR
Sbjct: 600 ISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGR---------- 649
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
IE G+T + ++L+ I P T+TFN ++ LC G ++ A LLL E G
Sbjct: 650 -IEDGLT--------MFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGF 700
Query: 208 IPSRTSHDMLIKKLDQQ 224
+P+ + +L++ + Q
Sbjct: 701 VPNHRTWSILLQSIIPQ 717
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLI----------QLL 165
+ P ++T+ +M FC V + A+ LL + + G N V TLI + L
Sbjct: 213 IPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEAL 272
Query: 166 QRLE----MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
Q LE MG +P TFN+VI LC +I++A ++ M G P ++ L+ L
Sbjct: 273 QLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGL 332
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV EA ++L + G PD T+ ++ G CK R NEA +++N + RG + +T
Sbjct: 267 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYG 326
Query: 163 QLLQRL-EMGHI------------PRTITFNNVIQALCGVGKIHKALLLLF-LMYEHGKI 208
L+ L ++G + P + FN +I G++ A +L ++ +G +
Sbjct: 327 YLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIV 386
Query: 209 PSRTSHDMLI 218
P +++ LI
Sbjct: 387 PDVCTYNSLI 396
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
P TF V++A C V +I AL LL M +HG +P+ + LI L +
Sbjct: 215 PTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSK 264
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ H + G++E+A +L ++K GL PDV +Y+ ++ GFC+ +EA+ + E +E+G+
Sbjct: 423 NGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIK 482
Query: 156 QNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198
+ +T L+Q L +G P T+ +I A C G + KAL L
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542
Query: 199 LFLMYEHGKIPSRTSHDMLIKKLDQQ 224
M E G +P ++ +LI L++Q
Sbjct: 543 HNEMVEKGVLPDVVTYSVLINGLNKQ 568
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EAY +L + ++G P V TY A+++G C G+ +A+ +L + E+G++ +VV+
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L + +E G P TIT++++IQ C + +A L M
Sbjct: 454 STVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513
Query: 205 HGKIPSRTSHDMLI 218
G P ++ LI
Sbjct: 514 VGLPPDEFTYTALI 527
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-- 160
++++ +++L ++ GL+P++ +Y +++G C+ GR E +L E RG + + VT
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYN 314
Query: 161 ---------------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + L G P IT+ ++I ++C G +++A+ L M
Sbjct: 315 TLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVR 374
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P+ ++ L+ Q+
Sbjct: 375 GLCPNERTYTTLVDGFSQK 393
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +A M + GL P V TYT+++ CK G N AME L++ RG+ N T
Sbjct: 324 GNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY 383
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ EM G P +T+N +I C GK+ A+ +L M E
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443
Query: 205 HGKIPSRTSHDMLI 218
G P S+ ++
Sbjct: 444 KGLSPDVVSYSTVL 457
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A + ++ G P+V TY ++DG+CK+ + ++ +LL +G+ N+++
Sbjct: 219 GNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISY 278
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ L EM G+ +T+N +I+ C G H+AL++ M
Sbjct: 279 NVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR 338
Query: 205 HGKIPSRTSHDMLIKKL 221
HG PS ++ LI +
Sbjct: 339 HGLTPSVITYTSLIHSM 355
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------I 162
+ P+V+TY ++ GFC G + A+ L ++ +G NVVT
Sbjct: 201 VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGF 260
Query: 163 QLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+LL+ + + G P I++N VI LC G++ + +L M G +++ LIK
Sbjct: 261 KLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIK 318
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS-NEAMELLN 147
D VK +S + +++A ++ + G P V +Y A++D + R+ + A +
Sbjct: 138 DLVVKSYSR---LSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFK 194
Query: 148 EAIERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVG 190
E +E V+ NV T + L ++E G +P +T+N +I C +
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
KI LL M G P+ S++++I L ++
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVINGLCRE 288
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 32/167 (19%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL--- 146
T + + M G +E+A ++ + G+ PDV TY+ +++G K R+ EA LL
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581
Query: 147 --NEAIERGVT-------------QNVVTLI-------------QLLQR-LEMGHIPRTI 177
E++ VT ++VV+LI Q+ + L H P
Sbjct: 582 FYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGT 641
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+N +I C G I KA L M + G + + L+K L ++
Sbjct: 642 AYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKE 688
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
E + V M G + EA ++ ++ KPD Y ++ G C+ G +A L
Sbjct: 604 EFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLY 663
Query: 147 NEAIERGVTQNVVTLIQLLQRL 168
E ++ G + VT+I L++ L
Sbjct: 664 KEMVKSGFLLHTVTVIALVKAL 685
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 28 ESLDLKENPRSLQAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86
E L +P + +D I KE + +F ++ G S + LL L
Sbjct: 323 EMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNA 382
Query: 87 EQDTAVKFF----SNHLMVGRV---------------EEAYEMLMNVKNDGLKPDVYTYT 127
E D A F+ N + VGR+ +EA +L + DG+ PD+ TY+
Sbjct: 383 EFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYS 442
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRLEM-------------- 170
A+++GFCKVGR A E++ G++ N + TLI R+
Sbjct: 443 ALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILE 502
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
GH TFN ++ +LC GK+ +A + M G +P+ S D LI
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 36/207 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL-------- 99
++ +++ ++IF + G N SV N +L ++V E + F L
Sbjct: 134 LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDV 193
Query: 100 -----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
G E++ ++ ++ G P + TY ++ +CK GR A+ELL+
Sbjct: 194 ATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 253
Query: 149 AIERGVTQNVVTLIQLLQ------RLEMGHI-----------PRTITFNNVIQALCGVGK 191
+GV +V T L+ R+ G++ P +T+N +I GK
Sbjct: 254 MKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGK 313
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ A LL M G P+ + + LI
Sbjct: 314 VLIASQLLNEMLSFGLSPNHVTFNALI 340
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 34/173 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K K I++ + +K G + V +N L+ L N R+ + Y
Sbjct: 240 KKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSN----------------RIAKGY 283
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+L +++ + P+ TY +++GF G+ A +LLNE + G++
Sbjct: 284 LLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLS------------- 330
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +TFN +I G +AL + ++M G PS S+ +L+ L
Sbjct: 331 -----PNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 378
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 98 HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
+L G ++++ E+ + G P VYT AI+ K G L E ++R + +
Sbjct: 133 YLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPD 192
Query: 158 VVT---LIQ-------------LLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
V T LI L+Q++E G+ P +T+N V+ C G+ A+ LL
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M G +++MLI L
Sbjct: 253 HMKSKGVDADVCTYNMLIHDL 273
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 33/193 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ LKE I I+ ++ +G FN L+ +L G+V EA
Sbjct: 485 RMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCK----------------AGKVAEAE 528
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E + + +DG+ P+ ++ +++G+ G +A + +E + G T LL+ L
Sbjct: 529 EFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGL 588
Query: 169 -EMGHIPR----------------TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ GH+ T+ +N ++ A+C G + KA+ L M + +P
Sbjct: 589 CKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDS 648
Query: 212 TSHDMLIKKLDQQ 224
++ LI L ++
Sbjct: 649 YTYTSLISGLCRK 661
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVT 160
G + +A + + + PD YTYT+++ G C+ G++ A+ EA RG V N V
Sbjct: 627 GNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVM 686
Query: 161 LIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ Q +GH P +T N +I +GKI K LL M
Sbjct: 687 YTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMG 746
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
P+ T++++L+ ++
Sbjct: 747 NQNGGPNLTTYNILLHGYSKR 767
Score = 37.7 bits (86), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA E+ + + N GLK D+ +Y ++ G C G A EL E G N T
Sbjct: 978 GNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTY 1037
Query: 162 IQLLQRL 168
L++ L
Sbjct: 1038 KALIRGL 1044
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 69 NWSVSDFNDLLMALVMLNEQDTAVKFFS----NHLMVGRVEEAYEMLMNVKNDGLKPDVY 124
NW+ D ++ +L + ++DT S NH R +E+ +L + G+ P+
Sbjct: 841 NWAF-DLVKVMTSLGISLDKDTCDAMVSVLNRNH----RFQESRMVLHEMSKQGISPESR 895
Query: 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVV--TLIQLLQR-------------- 167
Y +++G C+VG A + E I + NV +++ L +
Sbjct: 896 KYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFM 955
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
L+M +P +F ++ C G + +AL L +M G S+++LI L
Sbjct: 956 LKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGL 1009
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+ +EA +L + L P + ++T +M CK G EA+EL R V N
Sbjct: 942 CGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALEL------RVVMSNCGL 995
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+ L +++N +I LC G + A L M G + + T++ LI+
Sbjct: 996 KLDL------------VSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043
Query: 221 L 221
L
Sbjct: 1044 L 1044
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G++E+ ++L + N P++ TY ++ G+ K + + L I G+ + +T
Sbjct: 732 MGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLT 791
Query: 161 LIQLL------QRLEMG------HIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMY 203
L+ LE+G I R + TFN +I C G+I+ A L+ +M
Sbjct: 792 CHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMT 851
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G + + D ++ L++
Sbjct: 852 SLGISLDKDTCDAMVSVLNRN 872
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 36/199 (18%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------------NH 98
+ IF + K G + + L+ L D A K F+ N
Sbjct: 177 LKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLING 236
Query: 99 LMVGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
L + V+EA L +K+ G++P+V+TY+++MDG CK GRS +AMEL + RG N
Sbjct: 237 LCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPN 296
Query: 158 VVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLF 200
+VT ++LL R+ + G P + VI C + K +A L
Sbjct: 297 MVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLD 356
Query: 201 LMYEHGKIPSRTSHDMLIK 219
M G P+R + ++ +K
Sbjct: 357 EMILGGITPNRLTWNIHVK 375
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------------ 102
+ + +F+ +K + S + +L LV N+ + A KF+ N +G
Sbjct: 104 DSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLI 163
Query: 103 --------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
V+ ++ + + G PD YTY ++ G C+ GR +EA +L E +E+
Sbjct: 164 KALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDC 223
Query: 155 TQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALL 197
VVT L+ L EM G P T+++++ LC G+ +A+
Sbjct: 224 APTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAME 283
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L +M G P+ ++ LI L ++
Sbjct: 284 LFEMMMARGCRPNMVTYTTLITGLCKE 310
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 27/206 (13%)
Query: 40 QAQRFVDKIKASPLKERIDIFNSIK----KDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95
+A R+++++K+ ++ + ++S+ KDG + + +++MA T
Sbjct: 245 EAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLI 304
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ +++EA E+L + GLKPD Y ++ GFC + + EA L+E I G+T
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGIT 364
Query: 156 QN-------VVTLIQLLQRLEMGHIPRTI----------------TFNNVIQALCGVGKI 192
N V T ++++ L + R T ++++ LC G+
Sbjct: 365 PNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEF 424
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLI 218
KA+ L+ + G IPS+ + +LI
Sbjct: 425 QKAVQLVDEIVTDGCIPSKGTWKLLI 450
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 19/138 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A E++ + +G PDVYTY +++ G CK+G EA+E+L++ I R + N VT
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY 368
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLF-LMY 203
L+ L G +P TFN++IQ LC + + H+ + LF M
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC-LTRNHRVAMELFEEMR 427
Query: 204 EHGKIPSRTSHDMLIKKL 221
G P +++MLI L
Sbjct: 428 SKGCEPDEFTYNMLIDSL 445
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF------------- 95
K + ++E ++ + G V FN L+ L + A++ F
Sbjct: 377 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEF 436
Query: 96 SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ ++++ G+++EA ML ++ G V TY ++DGFCK ++ EA E+ +E
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEM 496
Query: 150 IERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
GV++N VT QL+ ++ M G P T+N+++ C G I
Sbjct: 497 EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDI 556
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KA ++ M +G P ++ LI L
Sbjct: 557 KKAADIVQAMTSNGCEPDIVTYGTLISGL 585
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 102 GRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
GRVE+A + + N DG PD YT+ +++G CK G A+E+++ ++ G +V T
Sbjct: 273 GRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYT 332
Query: 161 LIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++ L ++G + P T+T+N +I LC ++ +A L ++
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392
Query: 204 EHGKIPSRTSHDMLIKKL 221
G +P + + LI+ L
Sbjct: 393 SKGILPDVCTFNSLIQGL 410
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 33/187 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA +K I+I + + ++G + V +N ++ L L G V+EA
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKL----------------GEVKEAV 350
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+L + P+ TY ++ CK + EA EL +G+ +V T L+Q L
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Query: 169 --------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
EM G P T+N +I +LC GK+ +AL +L M G S
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470
Query: 212 TSHDMLI 218
+++ LI
Sbjct: 471 ITYNTLI 477
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 42/213 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV--------------MLNEQDTAVKF 94
KA+ +E +IF+ ++ G + + +N L+ L M+ E K+
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKY 541
Query: 95 FSNHLMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ G +++A +++ + ++G +PD+ TY ++ G CK GR A +LL
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601
Query: 150 IERGV--------------------TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC-G 188
+G+ T+ + ++L++ E P +++ V + LC G
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAP--PDAVSYRIVFRGLCNG 659
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G I +A+ L + E G +P +S ML + L
Sbjct: 660 GGPIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 34/173 (19%)
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126
G VS FN L+ AL ++ A+ ML ++ + GL PD T+
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAIL----------------MLEDMPSYGLVPDEKTF 227
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----------------IQLLQRL-- 168
T +M G+ + G + A+ + + +E G + + V++ + +Q +
Sbjct: 228 TTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSN 287
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G P TFN ++ LC G + A+ ++ +M + G P +++ +I L
Sbjct: 288 QDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M R++EA EM + + G PDV TY+ +++G+CK + M+L E +RGV +N V
Sbjct: 303 MYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTV 362
Query: 160 TLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T L+Q + G P IT+N ++ LC GKI KAL++L M
Sbjct: 363 TYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADM 422
Query: 203 YEHGKIPSRTSHDMLIKKL 221
++G +++++I+ +
Sbjct: 423 QKNGMDADIVTYNIIIRGM 441
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 33/188 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K+ + +D+ N ++KDG V +N L+ L GR +A
Sbjct: 198 KSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCS----------------SGRWSDAT 241
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
M+ + + PDV+T+ A++D K GR +EA E E I R + ++VT L+ L
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGL 301
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
M G P +T++ +I C K+ + L M + G + +
Sbjct: 302 CMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNT 361
Query: 212 TSHDMLIK 219
++ +LI+
Sbjct: 362 VTYTILIQ 369
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 33/193 (17%)
Query: 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE 105
+ I+ L + +D+F + + S++DF+ LL A+ + + D + +
Sbjct: 55 NGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLW---------- 104
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
E +ML G+ ++ T +++ FC+ + + A+ L + I+ G ++VT LL
Sbjct: 105 EQMQML------GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLL 158
Query: 166 -----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208
Q + MG+ P + +N +I LC ++ AL LL M + G
Sbjct: 159 NGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIG 218
Query: 209 PSRTSHDMLIKKL 221
P +++ LI L
Sbjct: 219 PDVVTYNSLISGL 231
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 21/144 (14%)
Query: 78 LLMALVMLNEQDTAVKFFS--NHLMVG-RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
L ++ L + + V F S N G RV +A M + G KP+V Y I+DG C
Sbjct: 138 FLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLC 197
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194
K + + A++LLN + G+ P +T+N++I LC G+
Sbjct: 198 KSKQVDNALDLLNRMEKDGIG------------------PDVVTYNSLISGLCSSGRWSD 239
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A ++ M + P + + LI
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALI 263
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VE ++ + G+ + TYT ++ G+C+ G+ N A E+ + GV N++T
Sbjct: 341 KVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYN 400
Query: 163 QLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL L + G I + +T+N +I+ +C G++ A + +
Sbjct: 401 VLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQ 460
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G +P ++ ++ L ++
Sbjct: 461 GLMPDIWTYTTMMLGLYKK 479
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157
G V +A+++ ++ GL PD++TYT +M G K G EA L + E G+ N
Sbjct: 445 GEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++E+A +L +++ +G+ D+ TY I+ G CK G +A ++ +G+ ++ T
Sbjct: 410 GKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTY 469
Query: 162 IQLL 165
++
Sbjct: 470 TTMM 473
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + AY +L + + GL PD +TYT+++D CK R EA +L + ++GV NVV
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMY 535
Query: 162 IQLLQ------RLEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ +++ H +P ++TFN +I LC GK+ +A LL M +
Sbjct: 536 TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVK 595
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ ++ +LI +L
Sbjct: 596 IGLQPTVSTDTILIHRL 612
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 38/188 (20%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A + E +D+F +K D +V + L+ +L R EA
Sbjct: 301 ARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSE----------------RKSEALN 344
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT--------- 160
++ ++ G+KP+++TYT ++D C + +A ELL + +E+G+ NV+T
Sbjct: 345 LVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYC 404
Query: 161 ----------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+++L++ ++ P T T+N +I+ C +HKA+ +L M E +P
Sbjct: 405 KRGMIEDAVDVVELMESRKLS--PNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPD 461
Query: 211 RTSHDMLI 218
+++ LI
Sbjct: 462 VVTYNSLI 469
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T K + + +G VEEA + + + GL PD +TYT+++ G+C+ + A ++ NE
Sbjct: 220 TYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM 279
Query: 150 IERGVTQNVVTLIQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKI 192
+G +N V L+ L + P T+ +I++LCG +
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERK 339
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+AL L+ M E G P+ ++ +LI L Q
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDSLCSQ 371
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+E ++ M + D + P++YTY +++G+CK+G EA + +++ +E G+ + T
Sbjct: 197 GLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTY 256
Query: 162 IQLLQRLEMGHIPRT---------------------ITFNNVIQALCGVGKIHKALLLLF 200
L+ MG+ R + + ++I LC +I +A+ L
Sbjct: 257 TSLI----MGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFV 312
Query: 201 LMYEHGKIPSRTSHDMLIKKL 221
M + P+ ++ +LIK L
Sbjct: 313 KMKDDECFPTVRTYTVLIKSL 333
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 41/229 (17%)
Query: 16 LVDSPSRSP---SAAESLDLKEN----PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDG 67
L+D RS SA L L + P +D + K+ ++E D+F+S+++ G
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKG 527
Query: 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127
N +V + L+ + G+V+EA+ ML + + P+ T+
Sbjct: 528 VNPNVVMYTALI----------------DGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFN 571
Query: 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR-----------------LEM 170
A++ G C G+ EA L + ++ G+ V T L+ R L
Sbjct: 572 ALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS 631
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
G P T+ IQ C G++ A ++ M E+G P ++ LIK
Sbjct: 632 GTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIK 680
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T F + GR+ +A +M+ ++ +G+ PD++TY++++ G+ +G++N A ++L
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRM 698
Query: 150 IERGVTQNVVTLIQLLQRL-------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ G + T + L++ L + G P +N+++ + LL M
Sbjct: 699 RDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMME-------FDTVVELLEKM 751
Query: 203 YEHGKIPSRTSHDMLI 218
EH P+ S++ LI
Sbjct: 752 VEHSVTPNAKSYEKLI 767
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A +++ +++ L P+ TY ++ G+CK ++AM +LN+ +ER V
Sbjct: 407 GMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKV------- 458
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P +T+N++I C G A LL LM + G +P + ++ +I L
Sbjct: 459 -----------LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSL 507
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLK----PDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
N L+ G + M V N L+ PDV TY +++DG C+ G + A LL+ +R
Sbjct: 432 NELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR 491
Query: 153 GVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
G+ + T ++ L + G P + + +I C GK+ +A
Sbjct: 492 GLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIKKL 221
L+L M +P+ + + LI L
Sbjct: 552 HLMLEKMLSKNCLPNSLTFNALIHGL 577
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + AY + + G KPD +TYT + +C+ GR +A +++ + E GV+
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVS------ 669
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T++++I+ +G+ + A +L M + G PS+ + LIK L
Sbjct: 670 ------------PDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHL 717
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 36/205 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
L IDI + + G + +N LL + D A+++ N
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419
Query: 99 LMV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++ G+VE+A E+L + + G P + TY ++DG K G++ +A++LL+E +
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
+ + +T L+ L MG P +TFN+++ LC + +A+
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAI 539
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221
L M G P+ TS+ +LI+ L
Sbjct: 540 DFLVFMINRGCKPNETSYTILIEGL 564
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 23/143 (16%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V A ++L +++ G PDV TY +++G CK GR +EA++ LN+ G NV+T
Sbjct: 255 VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+L+ L G P +TFN +I LC G + +A+ +L M +HG
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 207 KIPSRTSHDMLI------KKLDQ 223
P+ S++ L+ KK+D+
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDR 397
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 22/144 (15%)
Query: 96 SNHL--MV--GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+NHL MV G +EE ++ L N+ G PD+ T ++ GFC++G++ +A ++L
Sbjct: 106 NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165
Query: 152 RGVTQNVVTL----------------IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195
G +V+T + +L R+ + P +T+N ++++LC GK+ +A
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS--PDVVTYNTILRSLCDSGKLKQA 223
Query: 196 LLLLFLMYEHGKIPSRTSHDMLIK 219
+ +L M + P ++ +LI+
Sbjct: 224 MEVLDRMLQRDCYPDVITYTILIE 247
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++++A E+L + PDV TYT +++ C+ AM+LL+E +RG T +VVT
Sbjct: 218 GKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTY 277
Query: 162 IQLLQ------RLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL+ G P IT N +++++C G+ A LL M
Sbjct: 278 NVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR 337
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G PS + ++LI L ++
Sbjct: 338 KGFSPSVVTFNILINFLCRK 357
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+ F ++GR A ++L + G +P+ +Y ++ GFCK + + A+E L +
Sbjct: 351 INFLCRKGLLGR---AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS 407
Query: 152 RGVTQNVVTL----------------IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHK 194
RG ++VT +++L +L G P IT+N VI L GK K
Sbjct: 408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK 467
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
A+ LL M P ++ L+ L ++
Sbjct: 468 AIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ + E I F+ ++ G + FN +++ L + D A+ F
Sbjct: 496 REGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDF-------------- 541
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
L+ + N G KP+ +YT +++G G + EA+ELLNE +G+ +
Sbjct: 542 --LVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMK 587
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 47/230 (20%)
Query: 39 LQAQRFVDK-----------IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87
++A+RFV IKA E ++F S+K+ G +N ++ +
Sbjct: 543 IKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGK 602
Query: 88 QDTAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTA 128
+ A + G R++EAY + K+ ++ +V Y++
Sbjct: 603 VNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSS 662
Query: 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-----------------EMG 171
++DGF KVGR +EA +L E +++G+T N+ T LL L E+
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722
Query: 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P +T+ +I LC V K +KA + M + G PS S+ +I L
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 36/210 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN---------- 97
+KA+ L+E D+ ++K + S + L+ A +N D + F
Sbjct: 144 VKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTV 203
Query: 98 HLMV---------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
HL GRV+ A +L +K+ L D+ Y +D F KVG+ + A + +E
Sbjct: 204 HLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263
Query: 149 AIERGVTQNVVTL----------------IQLLQRLEMG-HIPRTITFNNVIQALCGVGK 191
G+ + VT +++ + LE +P T +N +I GK
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGK 323
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A LL G IPS +++ ++ L
Sbjct: 324 FDEAYSLLERQRAKGSIPSVIAYNCILTCL 353
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G E+ M +K PD +Y+ ++ G K G +NE EL E+G +
Sbjct: 530 AGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLD--- 586
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
T +N VI C GK++KA LL M G P+ ++ +I
Sbjct: 587 ---------------TRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDG 631
Query: 221 L 221
L
Sbjct: 632 L 632
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 35/174 (20%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA+ L E +++F ++K+ +N ++M + G+ +EA
Sbjct: 284 CKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMG----------------YGSAGKFDEA 327
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
Y +L + G P V Y I+ K+G+ +EA+++ E
Sbjct: 328 YSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEE------------------- 368
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ P T+N +I LC GK+ A L M + G P+ + ++++ +L
Sbjct: 369 MKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRL 422
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---------FSN-- 97
K + E + +F +KKD ++S +N L+ L + DTA + F N
Sbjct: 355 KMGKVDEALKVFEEMKKDAAP-NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVR 413
Query: 98 --HLMVGRV------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++MV R+ +EA M + PD T+ +++DG KVGR ++A ++ +
Sbjct: 414 TVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM 473
Query: 150 IERGVTQNVVTLIQLLQ------RLEMGH 172
++ N + L++ R E GH
Sbjct: 474 LDSDCRTNSIVYTSLIKNFFNHGRKEDGH 502
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G + EA + K +G PD Y A+++G R+ +A L E RG+ + T
Sbjct: 775 AGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKT 834
Query: 161 LIQLLQRL 168
+ LL L
Sbjct: 835 CVVLLDTL 842
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T ++ + ++ E Y+++ ++ +P YT ++ F V S+
Sbjct: 134 NTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSD-------- 185
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
++TL Q +Q E+G+ P F +I+ G++ AL LL
Sbjct: 186 --------MMLTLFQQMQ--ELGYEPTVHLFTTLIRGFAKEGRVDSALSLL 226
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 25/139 (17%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRV++AY++ + + + + YT+++ F GR + ++ + I QN
Sbjct: 460 VGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMI----NQNCSP 515
Query: 161 LIQLLQRL----------EMGH-----------IPRTITFNNVIQALCGVGKIHKALLLL 199
+QLL E G +P +++ +I L G ++ L
Sbjct: 516 DLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELF 575
Query: 200 FLMYEHGKIPSRTSHDMLI 218
+ M E G + +++++I
Sbjct: 576 YSMKEQGCVLDTRAYNIVI 594
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 19/143 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS---------NHL 99
K + E I + + G ++ +N LL ALV E + A+ F N +
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQV 728
Query: 100 MVG----------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G + +A+ ++ G+KP +YT ++ G K G EA L +
Sbjct: 729 TYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788
Query: 150 IERGVTQNVVTLIQLLQRLEMGH 172
G + +++ L G+
Sbjct: 789 KANGGVPDSACYNAMIEGLSNGN 811
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ EEA + + G KP++ Y+ ++DG C+ G+ NEA E+LN I G N T
Sbjct: 376 GKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTY 435
Query: 162 ----------------IQLLQRLEMGHIPRT-ITFNNVIQALCGVGKIHKALLLLFLMYE 204
+Q+ + ++ R ++ +I LCGVG++ +A+++ M
Sbjct: 436 SSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLT 495
Query: 205 HGKIPSRTSHDMLIKKL 221
G P ++ +IK L
Sbjct: 496 IGIKPDTVAYSSIIKGL 512
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+ A E+ + PD YTY +MDG CK R +EA+ LL+E G + + V
Sbjct: 203 VDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNV 262
Query: 164 LLQRLE-----------------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ L G +P +T+N +I LC GK+ KA+ LL M
Sbjct: 263 LIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK 322
Query: 207 KIPSRTSHDMLIKKLDQQ 224
IP+ ++ LI L +Q
Sbjct: 323 CIPNDVTYGTLINGLVKQ 340
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VGRV+EA + + G+KPD Y++I+ G C +G + A++L +E
Sbjct: 480 VGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHE------------ 527
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+L + E P +T+N ++ LC I +A+ LL M + G P + + +
Sbjct: 528 ---MLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNT 584
Query: 221 LDQQ 224
L ++
Sbjct: 585 LSEK 588
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVV 159
G++++A +L + + P+ TY +++G K R+ +A+ LL+ ERG + Q++
Sbjct: 306 GKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIY 365
Query: 160 TLI--------------QLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+++ L +++ E G P + ++ ++ LC GK ++A +L M
Sbjct: 366 SVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIA 425
Query: 205 HGKIPSRTSHDMLIK 219
G +P+ ++ L+K
Sbjct: 426 SGCLPNAYTYSSLMK 440
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EAYE+L + ++G PDV TYT ++D C + + A E+ + + VT
Sbjct: 272 GKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTY 331
Query: 162 IQLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
I LL R EM GH+P +TF ++ ALC G +A L +M +
Sbjct: 332 ITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD 391
Query: 205 HGKIPSRTSHDMLIKKL 221
G +P+ +++ LI L
Sbjct: 392 QGILPNLHTYNTLICGL 408
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 37/189 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
KA +E IF +K G +N ++ + E D A+K S + G
Sbjct: 480 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVI 539
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
RV+EA++M M +K LKP V TY ++ G K G+ EA+EL
Sbjct: 540 VVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGM 599
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+++G P TITFN + LC ++ AL +LF M + G +P
Sbjct: 600 VQKGCP------------------PNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVP 641
Query: 210 SRTSHDMLI 218
+++ +I
Sbjct: 642 DVFTYNTII 650
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA E D + ++ G ++ +N L+ L L V R+++A
Sbjct: 375 KAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGL----------------LRVHRLDDAL 418
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ N+++ G+KP YTY +D + K G S A+E + +G+ N+V L L
Sbjct: 419 ELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSL 478
Query: 169 -----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
++G +P ++T+N +++ VG+I +A+ LL M E+G P
Sbjct: 479 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV 538
Query: 212 TSHDMLIKKL 221
+ LI L
Sbjct: 539 IVVNSLINTL 548
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 38/221 (17%)
Query: 35 NPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93
+P + +D + K+ L E +F + G + + +N L+ E D A
Sbjct: 888 SPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACA 947
Query: 94 FFSNHL-------------------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
F + MVGRV+E +K GL PDV Y I++G
Sbjct: 948 LFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLG 1007
Query: 135 KVGRSNEAMELLNE-AIERGVTQNVVTLIQLLQRL-------EMGHI----------PRT 176
K R EA+ L NE RG+T ++ T L+ L E G I P
Sbjct: 1008 KSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNV 1067
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
TFN +I+ GK A + M G P+ +++ L
Sbjct: 1068 FTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+ EA ++ + + G +P+ Y +++GF K G ++ A L ++ GV
Sbjct: 905 GRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR------ 958
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T++ ++ LC VG++ + L + E G P ++++I L
Sbjct: 959 ------------PDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGL 1006
Query: 222 DQQ 224
+
Sbjct: 1007 GKS 1009
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL-I 162
+E A ++ + VK+ G PDV TY ++D + K G+ +E EL E N +T I
Sbjct: 801 IEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNI 860
Query: 163 QLLQRLEMGHI-----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ ++ G++ P T+ +I L G++++A L M ++
Sbjct: 861 VISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDY 920
Query: 206 GKIPSRTSHDMLI 218
G P+ +++LI
Sbjct: 921 GCRPNCAIYNILI 933
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 55 ERIDIFNSIKKDGTNWSVSDFNDLL----------MALVMLNEQDTAVK-----FFSNHL 99
E + F +K+ G N V +N ++ ALV+ NE T+ + N L
Sbjct: 979 EGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSL 1038
Query: 100 MV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
++ G VEEA ++ ++ GL+P+V+T+ A++ G+ G+ A + + G
Sbjct: 1039 ILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGF 1098
Query: 155 TQNVVTLIQLLQR 167
+ N T QL R
Sbjct: 1099 SPNTGTYEQLPNR 1111
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
+ +++ DG ++ DL+ ++ + +T + F + + G +++A L ++ G
Sbjct: 124 MLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFG 183
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----------------TQNVVTLI 162
+ Y+Y ++ K EAME+ I G +++ +++
Sbjct: 184 FVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVM 243
Query: 163 QLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LL+ +E +G P TF I+ L GKI++A +L M + G P ++ +LI L
Sbjct: 244 GLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDAL 303
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K ++E I++F + + G + FN L L +E A+K
Sbjct: 585 KNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALK--------------- 629
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
ML + + G PDV+TY I+ G K G+ EAM ++ +++ V + VTL LL
Sbjct: 630 -MLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQ-MKKLVYPDFVTLCTLL 684
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 20/152 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + M G V+EA +M ++ G PDV YT++++GFCK + ++AM++ E
Sbjct: 284 TYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEM 343
Query: 150 IERGVTQNVVTLIQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKI 192
++G+T N +T L+Q + G P T+N ++ LC GK+
Sbjct: 344 SQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV 403
Query: 193 HKALLLLFLMYEH---GKIPSRTSHDMLIKKL 221
KAL++ M + G P+ ++++L+ L
Sbjct: 404 KKALMIFEDMQKREMDGVAPNIWTYNVLLHGL 435
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 39/228 (17%)
Query: 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFV--DKIKASPLKERIDIFNSIKKDGTNWSV 72
L+ + ++ S + LDL R+ R + + + + E +D+F + + S+
Sbjct: 13 LVKGNSGKALSFSRLLDLSFWVRAFCNYREILRNGLHSLQFNEALDLFTHMVESRPLPSI 72
Query: 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY--EMLMNVKND------------- 117
DF LL + + + D + + ++G + Y +LMN
Sbjct: 73 IDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGK 132
Query: 118 ----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173
G +PD+ T+T++++GFC R EAM ++N+ +E G+
Sbjct: 133 MMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIK------------------ 174
Query: 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P + + +I +LC G ++ AL L M +G P + L+ L
Sbjct: 175 PDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGL 222
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+EEA M+ + G+KPDV YT I+D CK G N A+ L ++ G+ +VV
Sbjct: 157 RMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYT 216
Query: 163 QLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKA 195
L+ L G P ITFN +I A GK A
Sbjct: 217 SLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDA 266
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
G+V+ A + ++ + G+KP+V TYT ++ G + G +EA L + E GV+
Sbjct: 474 GKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527
Score = 37.4 bits (85), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 43/199 (21%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN----------- 97
K + + + IF + + G + + L+ + + + A + FS+
Sbjct: 329 KCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIR 388
Query: 98 ------HLMV--GRVEEA---YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
H + G+V++A +E + + DG+ P+++TY ++ G C G+ +A+ +
Sbjct: 389 TYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVF 448
Query: 147 NEAIER-------------------GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC 187
+ +R G +N V L L G P +T+ +I L
Sbjct: 449 EDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLP--SKGVKPNVVTYTTMISGLF 506
Query: 188 GVGKIHKALLLLFLMYEHG 206
G H+A +L M E G
Sbjct: 507 REGLKHEAHVLFRKMKEDG 525
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RVEEA ++L + +G +P+ Y A++DG CKVG+ +EA E+ E E G + T
Sbjct: 654 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 713
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ R LE P + + +I LC VGK +A L+ +M E
Sbjct: 714 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 773
Query: 206 GKIPSRTSHDMLI 218
G P+ ++ +I
Sbjct: 774 GCQPNVVTYTAMI 786
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 20/137 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E A+ + +K GL DVYTYT ++D FCK G +A + NE E G T NVVT
Sbjct: 498 KMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYT 557
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L G +P +T++ +I C G++ KA + M
Sbjct: 558 ALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGS 617
Query: 206 GKIPSRTSHDMLIKKLD 222
+P DM K+ D
Sbjct: 618 KDVPDV---DMYFKQYD 631
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+++EA E+ + G +YTY++++D + KV R + A ++L++ +E NVV
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVI 746
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+++ L E G P +T+ +I +GKI L LL M
Sbjct: 747 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG 806
Query: 204 EHGKIPSRTSHDMLI 218
G P+ ++ +LI
Sbjct: 807 SKGVAPNYVTYRVLI 821
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 21/157 (13%)
Query: 80 MALVMLNEQDTAVKFFSNHLM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
M+L L ++ F+ L VG+ EA L V+ + PD YT ++ G C+
Sbjct: 261 MSLANLRMDGFTLRCFAYSLCKVGKWREA---LTLVETENFVPDTVFYTKLISGLCEASL 317
Query: 139 SNEAMELLNEAIERGVTQNVVT----LIQLLQRLEMGHIPRTIT-------------FNN 181
EAM+ LN NVVT L L + ++G R + FN+
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377
Query: 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ A C G A LL M + G +P +++LI
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILI 414
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+KA + ++F ++ +G ++ ++ L+ + + A + F V +
Sbjct: 564 LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDV 623
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
++ +P+V TY A++DGFCK R EA +LL+ G
Sbjct: 624 DMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCE------------ 671
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P I ++ +I LC VGK+ +A + M EHG + ++ LI +
Sbjct: 672 ------PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDR 718
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
KA +++ FN +++ G +V + L+ A +L +V A
Sbjct: 529 CKAGLIEQARKWFNEMREVGCTPNVVTYTALIHA----------------YLKAKKVSYA 572
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
E+ + ++G P++ TY+A++DG CK G+ +A ++ ER V + +
Sbjct: 573 NELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIF----ERMCGSKDVPDVDMYFK 628
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
Q + P +T+ ++ C ++ +A LL M G P++ +D LI L
Sbjct: 629 QYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 684
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 52/174 (29%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE----------- 148
M+G++E E+L + + G+ P+ TY ++D CK G + A LL E
Sbjct: 791 MIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTA 850
Query: 149 ---AIERGVTQNVVTLIQLL-------------------------QRLEMGH-------- 172
+ G + + + LL QRLEM
Sbjct: 851 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT 910
Query: 173 -----IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + T+N++I++LC K+ A L M + G IP S LIK L
Sbjct: 911 FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGL 964
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 44/222 (19%)
Query: 28 ESLDLKENPRSLQAQRFVDKI-----KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82
E+L L E + F K+ +AS +E +D N ++ +V ++ LL
Sbjct: 288 EALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC 347
Query: 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142
+ N +GR + M+M +G P + +++ +C G + A
Sbjct: 348 L-------------NKKQLGRCKRVLNMMMM---EGCYPSPKIFNSLVHAYCTSGDHSYA 391
Query: 143 MELLNEAIERG-----VTQNVVT-------------LIQLLQR-----LEMGHIPRTITF 179
+LL + ++ G V N++ L+ L ++ L G + I
Sbjct: 392 YKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINV 451
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
++ + LC GK KA ++ M G IP +++ ++ L
Sbjct: 452 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYL 493
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 30/145 (20%)
Query: 67 GTNWSVSDFN-DLLMALVMLNE--QDTAVKFFS-------NHLMVGRVEEAYEMLMNVKN 116
G + FN + + +L +L+E QD F S N + R+E A +L V
Sbjct: 851 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT 910
Query: 117 DGLKPDVY--TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174
Y TY ++++ C + A +L +E ++GV IP
Sbjct: 911 FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGV------------------IP 952
Query: 175 RTITFNNVIQALCGVGKIHKALLLL 199
+F ++I+ L KI +ALLLL
Sbjct: 953 EMQSFCSLIKGLFRNSKISEALLLL 977
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A+ + ++ G K D+ TY ++ GFC GR ++ +LL + I+R ++ NVVT
Sbjct: 277 GSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTF 336
Query: 162 I----------------QLLQR-LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
QLL+ ++ G P TIT+N++I C ++ +A+ ++ LM
Sbjct: 337 SVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMIS 396
Query: 205 HGKIPSRTSHDMLI 218
G P + ++LI
Sbjct: 397 KGCDPDIMTFNILI 410
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+EEA +M+ + + G PD+ T+ +++G+CK R ++ +EL E RGV N
Sbjct: 383 RLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIAN----- 437
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
T+T+N ++Q C GK+ A L M P S+ +L+ L
Sbjct: 438 -------------TVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGL 483
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 35/181 (19%)
Query: 44 FVDKIKASPLKERID---IFNSIKKDGTNWSVSDFNDLLMALV-MLNEQDTAVKFFSNHL 99
F D I++ PL ID +F++I K + +L++AL + + A ++ +
Sbjct: 76 FRDMIQSRPLPTVIDFNRLFSAIAK-------TKQYELVLALCKQMESKGIAHSIYTLSI 128
Query: 100 MVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
M+ ++ A+ + + G +PD + +++G C R +EA+EL++ +E
Sbjct: 129 MINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVE-- 186
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
MGH P IT N ++ LC GK+ A++L+ M E G P+ +
Sbjct: 187 ----------------MGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVT 230
Query: 214 H 214
+
Sbjct: 231 Y 231
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V +A ++ + G +P+ TY +++ CK G++ AMELL + ER + + V
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L +E+ G IT+N +I C G+ LL M +
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 205 HGKIPSRTSHDMLI 218
P+ + +LI
Sbjct: 327 RKISPNVVTFSVLI 340
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV EA E++ + G KP + T +++G C G+ ++A+ L++ +E G N VT
Sbjct: 173 RVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYG 232
Query: 162 ---------------IQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++LL+++E +I + ++ +I LC G + A L M
Sbjct: 233 PVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK 292
Query: 206 GKIPSRTSHDMLI 218
G +++ LI
Sbjct: 293 GFKADIITYNTLI 305
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 35/162 (21%)
Query: 36 PRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94
P ++ +D K + L+E I + + + G + + FN L+
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILI--------------- 410
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ + R+++ E+ + G+ + TY ++ GFC+ G+ A +L E + R V
Sbjct: 411 -NGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRV 469
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196
P +++ ++ LC G++ KAL
Sbjct: 470 R------------------PDIVSYKILLDGLCDNGELEKAL 493
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
+ FS + E + +++ G+ +YT + +++ FC+ + + A + +
Sbjct: 93 RLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKI--- 149
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
+++G+ P T+ FN ++ LC ++ +AL L+ M E G P+
Sbjct: 150 ---------------MKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLI 194
Query: 213 SHDMLIKKL 221
+ + L+ L
Sbjct: 195 TLNTLVNGL 203
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +E+A E+ ++ ++ D+ Y I+ G C + ++A +L +GV
Sbjct: 487 GELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGV------- 539
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+L R +N +I LC + KA +L M E G P ++++LI+
Sbjct: 540 -KLDAR----------AYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIR 586
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 18/119 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+VEEA + + K +G+ PDVYTY+ ++DG CK R+ E E +E + + V
Sbjct: 603 KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQ------- 655
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
P T+ +N++I+A C G++ AL L M G P+ ++ LIK +
Sbjct: 656 -----------PNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 703
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 35/167 (20%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+D+F + G S + N LL +LV NE + F +V
Sbjct: 224 LDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAF-----------------DVVC 266
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G+ PDVY +T ++ FCK G+ EA++L ++ E GV NVV
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV----------------- 309
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223
TFN VI L G+ +A + M E G P+ ++ +L+K L +
Sbjct: 310 -TFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTR 355
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 34/172 (19%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
K ++E + +F+ +++ G +V FN ++ L M GR +EA
Sbjct: 284 CKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGM----------------CGRYDEA 327
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ + G++P + TY+ ++ G + R +A +L E ++G NV
Sbjct: 328 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNV--------- 378
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
I +NN+I + G ++KA+ + LM G + ++++ LIK
Sbjct: 379 ---------IVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 421
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ +A E+ N G D T A++ G C+ G+ +EA + E + RG +
Sbjct: 497 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD---- 552
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+++N +I CG K+ +A + L M + G P ++ +LI L
Sbjct: 553 --------------RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGL 598
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
++ RVEEA + ++ +GL+P+V+ YTA++DG+ K+G+ + LL E + V N +
Sbjct: 705 IISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKI 764
Query: 160 TLIQLL------------QRL-----EMGHIPRTITFNNVIQALCGVGKIHKAL 196
T ++ RL E G +P +IT+ I G + +A
Sbjct: 765 TYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAF 818
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 36/202 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NH 98
++E I ++ K++G V ++ ++ + +FF NH
Sbjct: 604 VEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNH 663
Query: 99 LM-----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
L+ GR+ A E+ ++K+ G+ P+ TYT+++ G + R EA L E G
Sbjct: 664 LIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEG 723
Query: 154 VTQNV----------------VTLIQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKAL 196
+ NV V + LL+ + ++ P IT+ +I G + +A
Sbjct: 724 LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEAS 783
Query: 197 LLLFLMYEHGKIPSRTSHDMLI 218
LL M E G +P ++ I
Sbjct: 784 RLLNEMREKGIVPDSITYKEFI 805
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V EA +L ++ G+ PD TY + G+ K G EA + +E + + L
Sbjct: 777 GNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDEENYAAIIEGWNKL 836
Query: 162 IQ 163
IQ
Sbjct: 837 IQ 838
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V+ A ++ + +G PD +TY +++DG C G +N A+ L NEA+ +G+ NV+
Sbjct: 335 GMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILY 394
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L++ L E G IP TFN ++ LC +G + A L+ +M
Sbjct: 395 NTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMIS 454
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P + ++LI Q
Sbjct: 455 KGYFPDIFTFNILIHGYSTQ 474
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++A+++ M +++ G+ PDVY++T M FCK R + A+ LLN +G NVV
Sbjct: 125 GYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAY 184
Query: 162 I----------------QLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYE 204
+L ++ + + TFN +++ LC G + + LL + +
Sbjct: 185 CTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIK 244
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G +P+ ++++ I+ L Q+
Sbjct: 245 RGVLPNLFTYNLFIQGLCQR 264
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 18/140 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
++E A E+L + ++G+ PDVYTY ++++G CK + + ME +E+G N+ T
Sbjct: 476 KMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFN 535
Query: 163 QLLQRL--------EMGHI---------PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL+ L +G + P +TF +I C G + A L M E
Sbjct: 536 ILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEA 595
Query: 206 GKIPSRT-SHDMLIKKLDQQ 224
K+ S T +++++I ++
Sbjct: 596 YKVSSSTPTYNIIIHAFTEK 615
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178
L PD YTY ++DGFCK G N + LL+ +E G IP T
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVNLGYKF------------------LLEMMENGFIPSLTT 674
Query: 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
VI LC ++++A ++ M + G +P
Sbjct: 675 LGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 22/173 (12%)
Query: 68 TNWSVSDFNDLLMALVMLNE--QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYT 125
TN +++ FN+ L + N +T +K SN G + EA ++ + GL P+V T
Sbjct: 372 TNRALALFNEALGKGIKPNVILYNTLIKGLSNQ---GMILEAAQLANEMSEKGLIPEVQT 428
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-----------------RL 168
+ +++G CK+G ++A L+ I +G ++ T L+ L
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVML 488
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G P T+N+++ LC K + M E G P+ + ++L++ L
Sbjct: 489 DNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESL 541
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 24/176 (13%)
Query: 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------RVEEAYEMLMNVKNDGLKPDV 123
S F D++ + E+ A F+ ++++ +++EA +L +KN + PD
Sbjct: 507 CKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDA 566
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIE---------------RGVTQ--NVVTLIQLLQ 166
T+ ++DGFCK G + A L + E T+ NV +L Q
Sbjct: 567 VTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQ 626
Query: 167 RL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ + P T+ ++ C G ++ L M E+G IPS T+ +I L
Sbjct: 627 EMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCL 682
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
++ G V+EA +++ + + GLKPD++TY I+ G CK G + A E++ +G +V
Sbjct: 239 MLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDV 298
Query: 159 VTLIQLLQRL------EMGHI-----------PRTITFNNVIQALCGVGKIHKALLLLFL 201
++ LL+ L E G P +T++ +I LC GKI +A+ LL L
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKL 358
Query: 202 MYEHGKIPSRTSHDMLIKKLDQQ 224
M E G P S+D LI ++
Sbjct: 359 MKEKGLTPDAYSYDPLIAAFCRE 381
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++EEA +L +K GL PD Y+Y ++ FC+ GR + A+E L I G
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC------- 399
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P + +N V+ LC GK +AL + + E G P+ +S++ + L
Sbjct: 400 -----------LPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+++A +L +++ PD TY ++ C G+ + A+++LN+ + V+T
Sbjct: 173 RIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYT 232
Query: 163 QLLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L++ L G P T+N +I+ +C G + +A ++ +
Sbjct: 233 ILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELK 292
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P S+++L++ L Q
Sbjct: 293 GCEPDVISYNILLRALLNQ 311
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 97/234 (41%), Gaps = 45/234 (19%)
Query: 15 LLVDSPSRSPSAAESLDL----KENPRSLQAQRFVDKIKASPLKERIDI----FNSIKKD 66
+L+ + R E+++L KE + A + I A + R+D+ ++ D
Sbjct: 338 ILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397
Query: 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE-------------------EA 107
G + ++N +L L + D A++ F VG A
Sbjct: 398 GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRA 457
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
M++ + ++G+ PD TY +++ C+ G +EA ELL + ++
Sbjct: 458 LHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVD----------------MRS 501
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
E P +T+N V+ C +I A+ +L M +G P+ T++ +LI+ +
Sbjct: 502 CEFH--PSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 18/100 (18%)
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179
+PDV+ Y A+++GFCK+ R ++A +L+ + + P T+T+
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS------------------PDTVTY 196
Query: 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
N +I +LC GK+ AL +L + P+ ++ +LI+
Sbjct: 197 NIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIE 236
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R+E+A +L ++ +G +P+ TYT +++G G EAMEL N+ + I
Sbjct: 523 RIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR----------I 572
Query: 163 QLLQRLEMGHIPRTITFNNVIQ 184
+ + RT NV+Q
Sbjct: 573 DAISEYSFKRLHRTFPLLNVLQ 594
>sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protein At2g26790,
mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3
SV=1
Length = 799
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 67/112 (59%), Gaps = 17/112 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+GRVEEA+E+L +K+ G+ PDV YT ++DG+C G+ +A++L++E I G++ +++T
Sbjct: 401 LGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLIT 460
Query: 161 ----------------LIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKA 195
++++ +R++ G P +T + +I+ LC K+ +A
Sbjct: 461 YNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEA 512
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165
EA E ++ + D Y D K+GR EA ELL E +RG+
Sbjct: 371 EALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGI----------- 419
Query: 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P I + +I C GK+ AL L+ M +G P ++++L+ L
Sbjct: 420 -------VPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGL 468
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 20/144 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
V+ F N + +++ A +++ ++ G DVY A++D +CK EA+ L++ +
Sbjct: 290 VRGFCNEM---KMKAAESVIIEMEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLG 346
Query: 152 RGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHK 194
+G+ N V + +LQ +M + +N AL +G++ +
Sbjct: 347 KGLKVNCVIVSLILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEE 406
Query: 195 ALLLLFLMYEHGKIPSRTSHDMLI 218
A LL M + G +P ++ LI
Sbjct: 407 AFELLQEMKDRGIVPDVINYTTLI 430
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V EA + + GL PD++TYT ++ +C++ +A L + +RG+ +VVT
Sbjct: 607 VREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTV 666
Query: 164 LLQR 167
LL R
Sbjct: 667 LLDR 670
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151
+K F + + G +E+A+++L + ++P ++ FCK+ EA L + +E
Sbjct: 560 IKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVE 619
Query: 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
RG+ IP T+ +I C + ++ KA L M + G P
Sbjct: 620 RGL------------------IPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDV 661
Query: 212 TSHDMLIKK 220
++ +L+ +
Sbjct: 662 VTYTVLLDR 670
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
+ + G+V +A +++ + +G+ PD+ TY ++ G + G E +E+ G
Sbjct: 432 GYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKP 491
Query: 157 NVVT 160
N VT
Sbjct: 492 NAVT 495
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
VG+ +A E+L G+ DV YT ++D CK+ +A EL + I+ G+ ++V
Sbjct: 688 VGK-RKASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVA 746
Query: 161 LIQLLQR-LEMGHIPRTITF 179
L+ G+I +T
Sbjct: 747 YTTLISSYFRKGYIDMAVTL 766
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G EE E+ +K +G KP+ T + I++G C + EA + + ++E+ +N +
Sbjct: 472 GHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFS-SLEQKCPENKASF 530
Query: 162 IQ 163
++
Sbjct: 531 VK 532
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 26/167 (15%)
Query: 81 ALVMLNEQ-DTAVKF--------FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
AL L E DT +K + H G + A + + N L+P V TYT++M
Sbjct: 421 ALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMG 480
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EMGHI---P 174
G+C G+ N+A+ L +E +G+ ++ T LL L EM P
Sbjct: 481 GYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKP 540
Query: 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+T+N +I+ C G + KA L M E G +P S+ LI L
Sbjct: 541 NRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGL 587
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 22/116 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR+EEA E++ + DG+ PD TYT +++ C+ +A+EL N E+G+
Sbjct: 801 GRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIR------ 854
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP----SRTS 213
P + +N +I C G++ KA L M G IP SRT+
Sbjct: 855 ------------PDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSRTT 898
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE---------AIER 152
G +EA+ + + N+G P+ TYTA+++G CK G NEA L ++ +
Sbjct: 696 GDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTY 755
Query: 153 GVTQNVVT--------LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
G +++T ++L + G + T T+N +I+ C G+I +A L+ M
Sbjct: 756 GCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIG 815
Query: 205 HGKIPSRTSHDMLIKKLDQQ 224
G P ++ +I +L ++
Sbjct: 816 DGVSPDCITYTTMINELCRR 835
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 18/143 (12%)
Query: 97 NHLMVGRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
+ L GR E+L + + GL+P+ TY+ ++D FC+ G+ + A+ L E ++ G+
Sbjct: 375 DSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLK 434
Query: 156 QNVVTLIQLLQ-RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLL 198
+V L+ + G I P +T+ +++ C GKI+KAL L
Sbjct: 435 LSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRL 494
Query: 199 LFLMYEHGKIPSRTSHDMLIKKL 221
M G PS + L+ L
Sbjct: 495 YHEMTGKGIAPSIYTFTTLLSGL 517
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 18/108 (16%)
Query: 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM 170
L N GL + TY ++ GFC+ GR EA EL+ I GV+
Sbjct: 775 LHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVS--------------- 819
Query: 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P IT+ +I LC + KA+ L M E G P R +++ LI
Sbjct: 820 ---PDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLI 864
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI------------ 150
+V EA + ++ LKPDV TY ++ G CKV +E+++E +
Sbjct: 277 KVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVS 336
Query: 151 -------ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+RG + + L++ + ++ G P +N +I +LC K H+A LL M
Sbjct: 337 SLVEGLRKRGKIEEALNLVK--RVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMG 394
Query: 204 EHGKIPSRTSHDMLI 218
+ G P+ ++ +LI
Sbjct: 395 KIGLRPNDVTYSILI 409
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 84/234 (35%), Gaps = 71/234 (30%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS--------------NHLMVGRV 104
+++ + G S+ F LL L AVK F+ N ++ G
Sbjct: 494 LYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYC 553
Query: 105 EE-----AYEMLMNVKNDGLKPDVYTY--------------------------------- 126
EE A+E L + G+ PD Y+Y
Sbjct: 554 EEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEI 613
Query: 127 --TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT----------------LIQLLQRL 168
T ++ GFC+ G+ EA+ + E ++RGV ++V LL+ +
Sbjct: 614 CYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEM 673
Query: 169 -EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ G P + + ++I A G +A + LM G +P+ ++ +I L
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGL 727
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++EEA ++ V + G+ P+++ Y A++D CK GR ELL + + +
Sbjct: 346 GKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCK-GRKFHEAELLFDRMGK--------- 395
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+G P +T++ +I C GK+ AL L M + G
Sbjct: 396 --------IGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTG 432
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ A EM+ +++ G ++ Y ++DG CK + EA+ + + + + +VVT
Sbjct: 243 LSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCT 302
Query: 164 L------LQRLEMG-----------HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L +Q E+G P +++++ L GKI +AL L+ + + G
Sbjct: 303 LVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFG 362
Query: 207 KIPSRTSHDMLIKKL 221
P+ ++ LI L
Sbjct: 363 VSPNLFVYNALIDSL 377
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
A E+ ++ + G++PDVY YT ++ C++ + A E++ G N+V
Sbjct: 211 AMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIV 263
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 34/213 (15%)
Query: 27 AESLDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
++ ++ K NP +D +K L E +++ + K + S+ ++ L+ M
Sbjct: 315 SDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMH 374
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
+ R++EA +M + + PDV TY ++ GFCK R E ME+
Sbjct: 375 D----------------RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 418
Query: 146 LNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTITFNNVIQALCG 188
E +RG+ N VT L+Q L EM G P +T+N ++ LC
Sbjct: 419 FREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 478
Query: 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
GK+ KA+++ + P+ +++++I+ +
Sbjct: 479 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 511
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + PDV+T++A++D F K G+ EA +L +E ++R + ++VT
Sbjct: 305 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364
Query: 162 IQLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ M P +T+N +I+ C ++ + + + M +
Sbjct: 365 SSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ 424
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + ++++LI+ L Q
Sbjct: 425 RGLVGNTVTYNILIQGLFQ 443
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 77/190 (40%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN--------HLM 100
K ++E +++F + + G + +N L+ L + D A + F ++M
Sbjct: 408 KYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIM 467
Query: 101 V-----------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G++E+A + ++ ++P +YTY +++G CK G+ + +L
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 527
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+GV P + +N +I C G +A L M E G +P
Sbjct: 528 SLKGVK------------------PDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569
Query: 210 SRTSHDMLIK 219
+ ++ LI+
Sbjct: 570 NSGCYNTLIR 579
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L + + +F + K S+ +F+ LL A+ +N+ D +
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQ--------------- 106
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------- 165
++N G+ + YTY+ +++ FC+ + A+ +L + ++ G N+VTL LL
Sbjct: 107 -MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165
Query: 166 ----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q G+ P T+TFN +I L K +A+ L+ M G P ++
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225
Query: 216 MLIKKLDQQ 224
+++ L ++
Sbjct: 226 VVVNGLCKR 234
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A+ +L ++ L+P V Y I+DG CK ++A+ L E +G+ NVVT
Sbjct: 235 GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294
Query: 162 IQLL------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL I R I TF+ +I A GK+ +A L M +
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354
Query: 205 HGKIPSRTSHDMLI 218
PS ++ LI
Sbjct: 355 RSIDPSIVTYSSLI 368
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 46/250 (18%)
Query: 3 ISAANSPT-PFSVLLVDSPSR--SPSAAESL--DLKENPRSLQAQRFVDKI----KASPL 53
+ + N P+ S +L+ + SR S S AES+ ++K L + + + K L
Sbjct: 435 LKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMHGYGKTHQL 494
Query: 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV--------- 104
+ ++ + ++ G + V+ +N L+ ++V+ D A + S + G V
Sbjct: 495 NKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDV 554
Query: 105 ----------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+EA+ + + + +KPDV T +A++ G+CK R +A+ L N+ ++ G+
Sbjct: 555 IGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGL 614
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
P + +N +I C VG I KA L+ LM + G +P+ ++H
Sbjct: 615 K------------------PDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTH 656
Query: 215 DMLIKKLDQQ 224
L+ L+ +
Sbjct: 657 HALVLGLEGK 666
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 49/174 (28%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAI------------------------ 129
F + G ++ +E+LM +K+ G++PD+ +T
Sbjct: 277 FIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFG 336
Query: 130 -----------MDGFCKVGRSNEAMELL-------NEAIERGVTQNVVTLIQLLQR---- 167
+DGFCKVG+ EA++L+ N + N+ + +L+
Sbjct: 337 ISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIF 396
Query: 168 ---LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
E+G +P + + +I C +G+ KA + + G PS T+ +LI
Sbjct: 397 QEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILI 450
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 44/217 (20%)
Query: 44 FVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK--------- 93
F+DK+ KA LKE + +K G + + ++ + + + A+K
Sbjct: 312 FIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRP 371
Query: 94 -------FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146
F SN G + A + + GL PD YT ++DG+C +GR+++A +
Sbjct: 372 NIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGRTDKAFQYF 431
Query: 147 NEAIERGVTQNVVT---LIQLLQRLEMGHIP----------------RTITFNNVIQALC 187
++ G ++ T LI R G I +T+NN++
Sbjct: 432 GALLKSGNPPSLTTSTILIGACSRF--GSISDAESVFRNMKTEGLKLDVVTYNNLMH--- 486
Query: 188 GVGKIH---KALLLLFLMYEHGKIPSRTSHDMLIKKL 221
G GK H K L+ M G P ++++LI +
Sbjct: 487 GYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSM 523
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A++ ++ G++P+V TYTA+++G C R ++A LL++ I++ +T NV+T
Sbjct: 205 RVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 264
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL + + M P +T++++I LC +I +A + LM
Sbjct: 265 ALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSK 324
Query: 206 GKIPSRTSHDMLI 218
G + S++ LI
Sbjct: 325 GCLADVVSYNTLI 337
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
R++EA +M + + G DV +Y +++GFCK R + M+L E +RG+ N VT
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369
Query: 163 QLLQR-LEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLL 199
L+Q + G + P T+N ++ LC G++ KAL++
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIF 423
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 44/219 (20%)
Query: 22 RSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA 81
R+ S+ DL+E L R D IK L + ID+F+ + K S+ DFN LL A
Sbjct: 42 RASSSVSGGDLRER---LSKTRLRD-IK---LNDAIDLFSDMVKSRPFPSIVDFNRLLSA 94
Query: 82 LVMLNEQDTAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDGLKPD 122
+V L + D + ++G +V A +L + G +PD
Sbjct: 95 IVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPD 154
Query: 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182
T ++++GFC+ R ++A+ L+++ + E+G+ P + +N +
Sbjct: 155 RVTIGSLVNGFCRRNRVSDAVSLVDKMV------------------EIGYKPDIVAYNAI 196
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
I +LC +++ A + G P+ ++ L+ L
Sbjct: 197 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGL 235
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A ++ + G KPD+ Y AI+D CK R N+A + E +G+ NVVT
Sbjct: 170 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT 229
Query: 163 QLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L + P IT++ ++ A GK+ +A L M
Sbjct: 230 ALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289
Query: 206 GKIPSRTSHDMLIKKL 221
P ++ LI L
Sbjct: 290 SIDPDIVTYSSLINGL 305
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VEEA+ + ++ GLKPD+ TYT +M G C G +E L + + G+ +N TL
Sbjct: 449 GKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 508
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 37/177 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS------------ 96
KA +++ + +F + + G + +N L+ + D A +FFS
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 401
Query: 97 --NHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
N L+ G +E+A + +++ + D+ TYT ++ G CK G+ EA L
Sbjct: 402 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 461
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
+G+ P +T+ ++ LC G +H+ L M + G
Sbjct: 462 SLKGLK------------------PDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 19/150 (12%)
Query: 90 TAVKFFSNHLMVGRVEEAYEML-MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T + M+ R+ EA +ML + ++ D L P+V TY +++GFCK R ++ MEL E
Sbjct: 360 TYSSLINGFCMLDRLGEAKQMLELMIRKDCL-PNVVTYNTLINGFCKAKRVDKGMELFRE 418
Query: 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGK 191
+RG+ N VT L+ Q + +G P +T+N ++ LC GK
Sbjct: 419 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGK 478
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ KA+++ + P +++++I+ +
Sbjct: 479 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGM 508
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 70/131 (53%), Gaps = 17/131 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A + ++N G++P+V TY++++ C GR ++A LL++ IER + N+VT L
Sbjct: 270 DDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSAL 329
Query: 165 L------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ ++L I R+I T++++I C + ++ +A +L LM
Sbjct: 330 IDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDC 389
Query: 208 IPSRTSHDMLI 218
+P+ +++ LI
Sbjct: 390 LPNVVTYNTLI 400
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 45/238 (18%)
Query: 4 SAANSPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSI 63
+AA P FS R+ S S D +E R+ + L + I +F +
Sbjct: 22 NAATFPLSFSF----CRRRAFSGKTSYDYREVLRT--------GLSDIELDDAIGLFGVM 69
Query: 64 KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123
+ S+ +F+ LL A+ +N+ D + F E E+L G+ ++
Sbjct: 70 AQSRPFPSIIEFSKLLSAIAKMNKFDLVISF----------GEKMEIL------GISHNL 113
Query: 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------Q 166
YTY +++ FC+ R + A+ LL + ++ G ++VTL LL Q
Sbjct: 114 YTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQ 173
Query: 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+EMG+ P T+TF +I L K +A+ L+ M + G P ++ ++ L ++
Sbjct: 174 MVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKR 231
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ EA ++ + G +PD+ TY A+++G CK G ++ A+ LLN+ + NVV
Sbjct: 198 KASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYS 257
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++ L EM G P IT++++I LC G+ A LL M E
Sbjct: 258 TVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIER 317
Query: 206 GKIPSRTSHDMLI 218
P+ + LI
Sbjct: 318 KINPNLVTFSALI 330
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
G++ +A + ++ ++PD+YTY +++G CK G+
Sbjct: 477 GKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 44/250 (17%)
Query: 16 LVDSPSRSPSAAESLDL--KENPRSLQAQRF-----VDKI-KASPLKERIDIFNSIKKDG 67
+V+ RS + +LDL K R+++A F +D + + + I +F ++ G
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258
Query: 68 TNWSVSDFNDLLMALVMLNEQDTA---------------VKFFSNHLMV----GRVEEAY 108
SV +N L+ L + + V F+ L V G+++EA
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 318
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
E+ + G+ P++ TY +MDG+C R +EA +L+ + + ++VT L++
Sbjct: 319 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378
Query: 169 EM-----------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
M G + +T++ ++Q C GKI A L M HG +P
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDV 438
Query: 212 TSHDMLIKKL 221
++ +L+ L
Sbjct: 439 MTYGILLDGL 448
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA ++ + +G +PDV TY +I++G C+ G ++ A++LL + ER V +V T
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 231
Query: 162 ----------------IQLLQRLEMGHIPRT-ITFNNVIQALCGVGKIHKALLLLFLMYE 204
I L + +E I + +T+N++++ LC GK + LLL M
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 291
Query: 205 HGKIPSRTSHDMLI 218
+P+ + ++L+
Sbjct: 292 REIVPNVITFNVLL 305
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 36/213 (16%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA---------------- 91
+K L+E +++ + G + ++ +N L+ M N A
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368
Query: 92 VKFFS---NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
V F S + MV RV++ ++ N+ GL + TY+ ++ GFC+ G+ A EL E
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428
Query: 149 AIERGVTQNVVTLIQLLQRL-EMGHIPRT----------------ITFNNVIQALCGVGK 191
+ GV +V+T LL L + G + + + + +I+ +C GK
Sbjct: 429 MVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK 488
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
+ A L + G P+ ++ ++I L ++
Sbjct: 489 VEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKK 521
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+A+ + ++ G+KP+V TYT ++ G CK G +EA LL + E G N T
Sbjct: 487 GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546
Query: 162 IQLLQ 166
L++
Sbjct: 547 NTLIR 551
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL----- 161
AY +L V G +PD T+ ++ G G+ +EA+ L++ +E G +VVT
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 201
Query: 162 -----------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ LL+++E ++ + T++ +I +LC G I A+ L M G
Sbjct: 202 GICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 261
Query: 210 SRTSHDMLIKKL 221
S +++ L++ L
Sbjct: 262 SVVTYNSLVRGL 273
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+T + H G AYE++ + ++G P++YTY A +D CK R+ EA ELLN+
Sbjct: 394 NTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNK 453
Query: 149 AIERGVTQNVVTLIQLLQ-RLEMGHIPRTITF---------------NNV-IQALCGVGK 191
A G+ + VT L+Q + + I + + F NN+ I A C K
Sbjct: 454 AFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKK 513
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ ++ L L+ G IP++ ++ +I
Sbjct: 514 MKESERLFQLVVSLGLIPTKETYTSMI 540
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NVVT 160
G +++A+EML + +G KP+VYT+TA++DG CK G + +A L + + + NV T
Sbjct: 301 GSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHT 360
Query: 161 LIQL---------LQRLEM--------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
+ L R EM G P T+ +I C G +A L+ LM
Sbjct: 361 YTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMG 420
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
+ G +P+ +++ I L ++
Sbjct: 421 DEGFMPNIYTYNAAIDSLCKK 441
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 102 GRVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G E+A+ + + V++D KP+V+TYT+++ G+CK + N A L + E+G+ NV T
Sbjct: 336 GWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNT 395
Query: 161 LIQLL----------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ + E+ G +P T+N I +LC + +A LL +
Sbjct: 396 YTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAF 455
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G ++ +LI++ +Q
Sbjct: 456 SCGLEADGVTYTILIQEQCKQ 476
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G V A + + G KP++ +T+++DG CK G +A E+L E + G NV T
Sbjct: 266 GLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTH 325
Query: 162 IQLLQRL-EMG-----------------HIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
L+ L + G + P T+ ++I C K+++A +L M
Sbjct: 326 TALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMK 385
Query: 204 EHGKIPSRTSHDMLI 218
E G P+ ++ LI
Sbjct: 386 EQGLFPNVNTYTTLI 400
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 78 LLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
L+++L ++ ++T S + G ++ A + N+K G PD +TY +++ G CK
Sbjct: 523 LVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKS 582
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQL 164
+EA +L I+RG++ VT + L
Sbjct: 583 MVDEACKLYEAMIDRGLSPPEVTRVTL 609
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 52/176 (29%)
Query: 101 VGRVEEAYEMLMNVKNDGLK-----------------------------------PDVYT 125
+GR+ EA M+M+++N GL PD +
Sbjct: 160 IGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSS 219
Query: 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----------------- 168
Y ++ G + G+ EA L I+RG + T +L L
Sbjct: 220 YKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMI 279
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
++G P I F ++I LC G I +A +L M +G P+ +H LI L ++
Sbjct: 280 DLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKR 335
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 64/162 (39%), Gaps = 32/162 (19%)
Query: 62 SIKKDGTNWSV--------SDFNDLLMALVMLNEQDTAVKFFSNHLMVG------RVEEA 107
++ DG +++ +D N L +N+ N++++ +++E+
Sbjct: 458 GLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKES 517
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167
+ V + GL P TYT+++ +CK G + A++ + G
Sbjct: 518 ERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGC------------- 564
Query: 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+P + T+ ++I LC + +A L M + G P
Sbjct: 565 -----VPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSP 601
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 35/191 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A ++ I + +KK+G N +V +++ L+ VG+++EA
Sbjct: 280 RAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCK----------------VGKIQEAK 323
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE--------------AIERGV 154
+ VK GLK D YT +M+ FC+ G ++EAM+LL E I RG+
Sbjct: 324 QTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGL 383
Query: 155 TQNVVT--LIQLLQRL--EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ + +Q+L + E H+ + ++ ++ ALC G++ KA+ L +M E G P
Sbjct: 384 SSEGRSEEALQMLDQWGSEGVHLNKG-SYRIILNALCCNGELEKAVKFLSVMSERGIWPH 442
Query: 211 RTSHDMLIKKL 221
+ + L+ +L
Sbjct: 443 HATWNELVVRL 453
Score = 37.7 bits (86), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 20/137 (14%)
Query: 102 GRVEEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NVV 159
G V + ++L+ K++ GL+P+ + ++ CK G N A ++ E G++ N +
Sbjct: 174 GEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSI 233
Query: 160 TLIQLLQRL------------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201
T L+ L + G P +TFN +I C G++ +A +L
Sbjct: 234 TYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDF 293
Query: 202 MYEHGKIPSRTSHDMLI 218
M ++G P+ ++ L+
Sbjct: 294 MKKNGCNPNVYNYSALM 310
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + M R++EA M + + P+V TY+ ++ GFCK R E MEL E
Sbjct: 365 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREM 424
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
+RG+ N VT L+ Q + +G P +T+N ++ LC GK+
Sbjct: 425 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKL 484
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KA+++ + P +++++I+ +
Sbjct: 485 AKAMVVFEYLQRSTMEPDIYTYNIMIEGM 513
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 17/133 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+++A + + N G++PDV+TY++++ C GR ++A LL++ IER + NVVT
Sbjct: 274 MDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 333
Query: 164 LL------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ ++L I R+I T++++I C ++ +A + LM
Sbjct: 334 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 393
Query: 207 KIPSRTSHDMLIK 219
P+ ++ LIK
Sbjct: 394 CFPNVVTYSTLIK 406
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 45/238 (18%)
Query: 9 PTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGT 68
P+ F++ RS ++A + R + R D IK + + +D+F + K
Sbjct: 28 PSFFNLCGSGCWERSFASASG-----DYREILRNRLSDIIK---VDDAVDLFGDMVKSRP 79
Query: 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY-------------------E 109
S+ +FN LL A+ +N+ + + +G + Y
Sbjct: 80 FPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALA 139
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---- 165
+L + G +PD+ T +++++G+C R ++A+ L+++ +E G + T L+
Sbjct: 140 VLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLF 199
Query: 166 -------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
Q ++ G P +T+ V+ LC G I AL LL M E GKI +
Sbjct: 200 LHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEA 256
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG------ 102
KA ++E +++F + + G + + L+ + D A F + VG
Sbjct: 410 KAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNIL 469
Query: 103 -------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
++ +A + ++ ++PD+YTY +++G CK G+ + EL
Sbjct: 470 TYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL 529
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+GV+ NV I +N +I C G +A LL M E G +P
Sbjct: 530 SLKGVSPNV------------------IAYNTMISGFCRKGSKEEADSLLKKMKEDGPLP 571
Query: 210 SRTSHDMLIK 219
+ +++ LI+
Sbjct: 572 NSGTYNTLIR 581
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + P+V T++A++D F K G+ EA +L +E I+R + ++ T
Sbjct: 307 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 366
Query: 162 IQLLQ------RL-EMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL E H+ P +T++ +I+ C ++ + + L M +
Sbjct: 367 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQ 426
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + ++ LI Q
Sbjct: 427 RGLVGNTVTYTTLIHGFFQ 445
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
R+ +A ++ + G KPD +T+T ++ G +++EA+ L+++ ++RG ++VT
Sbjct: 168 RISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYG 227
Query: 162 ---------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ LL+++E G I + +N +I LC + AL L M
Sbjct: 228 TVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNK 287
Query: 206 GKIPSRTSHDMLIKKL 221
G P ++ LI L
Sbjct: 288 GIRPDVFTYSSLISCL 303
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A +L ++ ++ DV Y I+DG CK ++A+ L E +G+
Sbjct: 237 GDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIR------ 290
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P T++++I LC G+ A LL M E P+ + LI
Sbjct: 291 ------------PDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 335
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 18/123 (14%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++EEA + + D + P V TY A+++G+CK GR A ELL +R NV
Sbjct: 350 GKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVR-- 407
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TFN +++ LC VGK +KA+ LL M ++G P S+++LI L
Sbjct: 408 ----------------TFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGL 451
Query: 222 DQQ 224
++
Sbjct: 452 CRE 454
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV A+E+L ++ KP+V T+ +M+G C+VG+ +A+ LL ++ G++ ++V+
Sbjct: 385 GRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSY 444
Query: 162 IQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L GH+ P +TF +I A C GK A L LM
Sbjct: 445 NVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLR 504
Query: 205 HG 206
G
Sbjct: 505 KG 506
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 34/158 (21%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +KE + + I K G SV + L+ L+ G + ++
Sbjct: 558 KGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIR----------------SGDITGSF 601
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+L +K G P+VY YT I++G C+ GR EA +LL+ + GV+ N VT +++
Sbjct: 602 RILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK-- 659
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
G++ NN GK+ +AL + M E G
Sbjct: 660 --GYV------NN--------GKLDRALETVRAMVERG 681
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + AY++L ++ ++PD T+TAI++ FCK G+++ A L + +G++ + VT
Sbjct: 455 GHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTG 514
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L I +C VGK AL +L
Sbjct: 515 TTL------------------IDGVCKVGKTRDALFIL 534
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY---EMLMNVKN 116
+ ++ DG + D+ ++ AL + A F S L +G V +++ +L+
Sbjct: 183 YRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCR 242
Query: 117 -----DGLK------------PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
D LK P+ +Y+ ++ G C+VGR EA L ++ E+G
Sbjct: 243 GLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQ---- 298
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
P T T+ +I+ALC G I KA L M G P+ ++ +LI
Sbjct: 299 --------------PSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLID 344
Query: 220 KL 221
L
Sbjct: 345 GL 346
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+ + A L + G+ D T T ++DG CKVG++ +A+ +L ++ + +L
Sbjct: 490 GKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSL 549
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L L ++G +P +T+ ++ L G I + +L LM
Sbjct: 550 NVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKL 609
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G +P+ + ++I L Q
Sbjct: 610 SGCLPNVYPYTIIINGLCQ 628
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 17/178 (9%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118
I N+ K G S F L++ + ++ T VG+ +A +L +
Sbjct: 482 IINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMR 541
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------- 165
+ ++ I+D K + E + +L + + G+ +VVT L+
Sbjct: 542 ILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSF 601
Query: 166 QRLEM----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ LE+ G +P + +I LC G++ +A LL M + G P+ ++ +++K
Sbjct: 602 RILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK 659
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKI 192
CK GR++E+ +L+ +ERGV L++ + ++++ C K
Sbjct: 749 LCKEGRTDESNDLVQNVLERGV---------FLEK----------AMDIIMESYCSKKKH 789
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
K + L+ L+ + G +PS S ++I+ L ++
Sbjct: 790 TKCMELITLVLKSGFVPSFKSFCLVIQGLKKE 821
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV +A L + G+KPD TYT +MD FCK G + +LL E
Sbjct: 464 GRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSD--------- 514
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
GH+P +T+N ++ LC +G++ A +LL M G +P +++ L++
Sbjct: 515 ---------GHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLE 563
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 23/180 (12%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF---FSNHLMVGRVEEAYEMLMNVK 115
+ N K+G ++SD + + + Q T V F + + VG ++E + + ++
Sbjct: 246 LMNKFCKEG---NISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQME 302
Query: 116 NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------- 165
+PDV+TY+A+++ CK + + A L +E +RG+ N V L+
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEID 362
Query: 166 -------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ L G P + +N ++ C G + A ++ M G P + ++ LI
Sbjct: 363 LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLI 422
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------------ 165
GL+PD TYT ++DGFC+ G A+E+ E + G+ + V L+
Sbjct: 410 GLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDA 469
Query: 166 -----QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+ L G P +T+ ++ A C G LL M G +PS ++++L+
Sbjct: 470 ERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNG 529
Query: 221 L 221
L
Sbjct: 530 L 530
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ- 166
+ M + + G +VY + +M+ FCK G ++A ++ +E +R + VV+ L+
Sbjct: 225 WGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLING 284
Query: 167 RLEMGHI----------------PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
++G++ P T++ +I ALC K+ A L M + G IP+
Sbjct: 285 YCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPN 344
Query: 211 RTSHDMLI 218
LI
Sbjct: 345 DVIFTTLI 352
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 18/136 (13%)
Query: 104 VEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ +A EM +VK+ + PDV TYT+++ G+CK G+ EA LL++ + G+ VT
Sbjct: 257 LNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFN 316
Query: 163 QLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ + + G P +TF ++I C VG++ + L M
Sbjct: 317 VLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNAR 376
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ ++ +LI L
Sbjct: 377 GMFPNAFTYSILINAL 392
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 36/162 (22%)
Query: 76 NDLLMALVMLNEQDTAVKFFSNHLM-------------------VGRVEEAYEMLMNVKN 116
N LL LV L+ + A+K F HL VG+ E+A E+L +
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSG 234
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
G +PD+ TY ++ GFCK N+A E+ + V P
Sbjct: 235 FGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCS-----------------PDV 277
Query: 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+T+ ++I C GK+ +A LL M G P+ + ++L+
Sbjct: 278 VTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLV 319
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A E+ + + G PDV T+T+++DG+C+VG+ ++ L E RG+ N T
Sbjct: 326 GEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTY 385
Query: 162 IQLLQRLE-----------MGH------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L +G IP+ +N VI C GK+++A +++ M +
Sbjct: 386 SILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEK 445
Query: 205 HGKIPSRTSHDMLI 218
P + + +LI
Sbjct: 446 KKCKPDKITFTILI 459
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE-RGVTQNVVTLIQLL 165
A +M +K+DG+ P+ ++ F + G+ + A LL ++ E G V +L+ L
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTL 181
Query: 166 --------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+ L T TFN +I+ LCGVGK KAL LL +M G P
Sbjct: 182 VKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDI 241
Query: 212 TSHDMLIK 219
+++ LI+
Sbjct: 242 VTYNTLIQ 249
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V EA ++ ++ KPD T+T ++ G C GR EA+ + ++ + G + + +T+
Sbjct: 431 GKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITV 490
Query: 162 IQLLQRL----------EMGHIPRTITFNNVI 183
LL L + I R NNV+
Sbjct: 491 SSLLSCLLKAGMAKEAYHLNQIARKGQSNNVV 522
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H M GR+ EA + + G PD T ++++ K G + EA LN+ +G +
Sbjct: 461 GHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYH-LNQIARKGQSN 519
Query: 157 NVVTL 161
NVV L
Sbjct: 520 NVVPL 524
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96
RS +R + + + + +F + + S+ DF+ LL+A+ LN+ + + F
Sbjct: 44 RSDYRERLRSGLHSIKFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFR 103
Query: 97 NHLMVG-------------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137
+ M+G R+ A L + G +P + T+ ++++GFC V
Sbjct: 104 HLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVN 163
Query: 138 RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197
R EAM L+++ + +G+ P + +N +I +LC G+++ AL
Sbjct: 164 RFYEAMSLVDQIV------------------GLGYEPNVVIYNTIIDSLCEKGQVNTALD 205
Query: 198 LLFLMYEHGKIPSRTSHDMLIKKL 221
+L M + G P +++ LI +L
Sbjct: 206 VLKHMKKMGIRPDVVTYNSLITRL 229
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 37/192 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK---------FFSN-- 97
K L E +N + + N ++ +N L+ L + D A K FF N
Sbjct: 266 KEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAV 325
Query: 98 --------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
+ RV++ ++L + DG+ D +TY + G+C+ G+ + A ++L
Sbjct: 326 TYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRM 385
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+ GV P TFN ++ LC GKI KAL+ L + + +
Sbjct: 386 VSCGVH------------------PDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVV 427
Query: 210 SRTSHDMLIKKL 221
+++++IK L
Sbjct: 428 GIITYNIIIKGL 439
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 33/167 (19%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
+D+ +KK G V +N L+ L + + S+ + +
Sbjct: 204 LDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRM--------------- 248
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM------ 170
G+ PDV T++A++D + K G+ EA + NE I+R V N+VT L+ L +
Sbjct: 249 -GISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDE 307
Query: 171 -----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
G P +T+N +I C ++ + +L +M G
Sbjct: 308 AKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDG 354
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
V R EA ++ + G +P+V Y I+D C+ G+ N A+++L + G+ +VVT
Sbjct: 162 VNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVT 221
Query: 161 LIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
L+ RL MG P ITF+ +I G++ +A
Sbjct: 222 YNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEA 273
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ +A L +++ + TY I+ G CK + +A L +GV+ +V+T
Sbjct: 408 GKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKGVSPDVITY 467
Query: 162 IQLLQRLEMGHIPR 175
I ++ L + R
Sbjct: 468 ITMMIGLRRKRLWR 481
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 33/190 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA + + +++ N++ K+G +N +L + G+ +EA
Sbjct: 243 KAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL----------------HGYCSSGQPKEAI 286
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR- 167
L +++DG++PDV TY+ +MD CK GR EA ++ + +RG+ + T LLQ
Sbjct: 287 GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGY 346
Query: 168 ------LEM----------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
+EM G P F+ +I A GK+ +A+L+ M + G P+
Sbjct: 347 ATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNA 406
Query: 212 TSHDMLIKKL 221
++ +I L
Sbjct: 407 VTYGAVIGIL 416
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 21/208 (10%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDT 90
L +N R ++A++ D + LK I + ++ + T ++ + + LL +V
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370
Query: 91 AVKF---FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147
F + G+V++A + ++ GL P+ TY A++ CK GR +AM
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430
Query: 148 EAIERGVT-QNVV--TLIQ--------------LLQRLEMGHIPRTITFNNVIQALCGVG 190
+ I+ G++ N+V +LI +L+ L+ G TI FN++I + C G
Sbjct: 431 QMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG 490
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLI 218
++ ++ L LM G P+ +++ LI
Sbjct: 491 RVIESEKLFELMVRIGVKPNVITYNTLI 518
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 68/130 (52%), Gaps = 24/130 (18%)
Query: 97 NHLMVGRV---EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+H GRV E+ +E+++ + G+KP+V TY +++G+C G+ +EAM+LL+ + G
Sbjct: 485 SHCKEGRVIESEKLFELMVRI---GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
+ P T+T++ +I C + ++ AL+L M G P +
Sbjct: 542 LK------------------PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583
Query: 214 HDMLIKKLDQ 223
++++++ L Q
Sbjct: 584 YNIILQGLFQ 593
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 20/139 (14%)
Query: 103 RVEEAYEMLMNVKND---GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
R +EA E+L + +D G PDV +YT +++GF K G S++A +E ++RG+ +VV
Sbjct: 173 RSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVV 232
Query: 160 TLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
T ++ L + G +P +T+N+++ C G+ +A+ L M
Sbjct: 233 TYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM 292
Query: 203 YEHGKIPSRTSHDMLIKKL 221
G P ++ +L+ L
Sbjct: 293 RSDGVEPDVVTYSLLMDYL 311
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + + G+++EA ++L + + GLKP+ TY+ +++G+CK+ R +A+ L E G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576
Query: 154 VTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALC 187
V+ +++T +LQ L E G T+N ++ LC
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLC 627
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 20/121 (16%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLN-EAIERGVTQ--NVVTLIQLL--------- 165
G P+V++Y ++ G C RS EA+ELL+ A +RG +VV+ ++
Sbjct: 153 GCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDS 212
Query: 166 --------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217
+ L+ G +P +T+N++I ALC + KA+ +L M ++G +P +++ +
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSI 272
Query: 218 I 218
+
Sbjct: 273 L 273
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 36/202 (17%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---------------- 102
+F + + G +V +N L+ + + D A+K S + VG
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557
Query: 103 ---RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV----- 154
R+E+A + +++ G+ PD+ TY I+ G + R+ A EL E G
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELS 617
Query: 155 TQNVV-----------TLIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLM 202
T N++ +Q+ Q L + + TFN +I AL VG+ +A L
Sbjct: 618 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677
Query: 203 YEHGKIPSRTSHDMLIKKLDQQ 224
+G +P+ ++ ++ + + Q
Sbjct: 678 SSNGLVPNYWTYRLMAENIIGQ 699
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 22/121 (18%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR++ + L NV G + D +T ++ G C R+++AM++
Sbjct: 101 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI---------------- 144
Query: 162 IQLLQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE---HGKIPSRTSHDML 217
+L+R+ E+G IP ++N +++ LC + +AL LL +M + G P S+ +
Sbjct: 145 --VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202
Query: 218 I 218
I
Sbjct: 203 I 203
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 26/149 (17%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------- 98
+++ I + GT +S +N +L L D A++ F N
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 661
Query: 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT--Q 156
L VGR +EA ++ + ++GL P+ +TY + + G E +L + G T
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 721
Query: 157 NVVTLI--QLLQRLEMGHIPRTITFNNVI 183
++ I +LLQR G I R T+ ++I
Sbjct: 722 GMLNFIVRELLQR---GEITRAGTYLSMI 747
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T S +G + EA ++ + GL+PD T+T +++G+CK G +A + N
Sbjct: 388 TYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHM 447
Query: 150 IERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKI 192
I+ G + NVVT L+ L ++G P T+N+++ LC G I
Sbjct: 448 IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNI 507
Query: 193 HKALLLL 199
+A+ L+
Sbjct: 508 EEAVKLV 514
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A + + + + PDV TYTAI+ GFC++G EA +L +E +G+ + VT
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
+L+ ++ G P +T+ +I LC G + A LL M++
Sbjct: 425 TELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWK 484
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ ++ L
Sbjct: 485 IGLQPNIFTYNSIVNGL 501
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116
I +F + G W+V+ +N ++ + L GR++EA+ +L+ ++
Sbjct: 231 IIVFREFPEVGVCWNVASYNIVIHFVCQL----------------GRIKEAHHLLLLMEL 274
Query: 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLLQRL----- 168
G PDV +Y+ +++G+C+ G ++ +L+ +G+ N ++I LL R+
Sbjct: 275 KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAE 334
Query: 169 ------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
EM G +P T+ + +I C G I A + M+ P ++ +I
Sbjct: 335 AEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIIS 394
Query: 220 KLDQ 223
Q
Sbjct: 395 GFCQ 398
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA +++ + GL D TYT +MD +CK G ++A E+L E + +G+
Sbjct: 505 GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ------ 558
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
P +TFN ++ C G + LL M G P+ T+ + L+K+
Sbjct: 559 ------------PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 605
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156
H ++EA+ + +K G V TY+ ++ GF K + EA E+ ++ G+
Sbjct: 640 GHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAA 699
Query: 157 N 157
+
Sbjct: 700 D 700
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 17/135 (12%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
+G V +A E+ ++ DG++ D TY +++ G C GR ++A L+ + + R + NV+T
Sbjct: 187 IGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVIT 246
Query: 161 L----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMY 203
++L + + + P T+N++I LC G++ +A +L LM
Sbjct: 247 FTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV 306
Query: 204 EHGKIPSRTSHDMLI 218
G +P +++ LI
Sbjct: 307 TKGCLPDVVTYNTLI 321
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M GRV+EA +ML + G PDV TY +++GFCK R +E +L E +RG+ + +
Sbjct: 291 MHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTI 350
Query: 160 TLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
T ++Q M P T++ ++ LC ++ KAL+L
Sbjct: 351 TYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLF 404
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
RV +A +++ ++ G +PDV Y I+DG CK+G N+A+EL + GV + VT
Sbjct: 154 RVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYN 213
Query: 163 QLLQRLEMGH-----------------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
L+ L +P ITF VI GK +A+ L M
Sbjct: 214 SLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRR 273
Query: 206 GKIPSRTSHDMLIKKL 221
P +++ LI L
Sbjct: 274 CVDPDVFTYNSLINGL 289
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 91/216 (42%), Gaps = 36/216 (16%)
Query: 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98
+ F K + L+E ID+F + + S+ DF+ +L + D + F +
Sbjct: 36 FWGRTFSTKRSSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHM 95
Query: 99 LMVGRVEE--AYEMLMNV-----------------KNDGLKPDVYTYTAIMDGFCKVGRS 139
+ G + +Y +++N G +PDV T +++++GFC+ R
Sbjct: 96 EVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRV 155
Query: 140 NEAMELLNEAIERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNV 182
+A++L+++ E G +VV ++L R+E G +T+N++
Sbjct: 156 FDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSL 215
Query: 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
+ LC G+ A L+ M +P+ + +I
Sbjct: 216 VAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVI 251
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135
+G VE+A+++ ++ GLKPDV +YT ++ GFC+
Sbjct: 429 IGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCR 463
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 34/177 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------- 98
K+ + E +F + + G +N ++ D A + FS
Sbjct: 326 KSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYS 385
Query: 99 -LMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152
L+ G RVE+A + N++ ++ D+ TY ++ G CK+G +A +L +
Sbjct: 386 ILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK 445
Query: 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
G+ P +++ +I C + K+ LL M E G +P
Sbjct: 446 GLK------------------PDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 34/191 (17%)
Query: 27 AESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85
++ L+ K NP + +D K L E +F+ + + + ++ +N L+ M
Sbjct: 299 SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358
Query: 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
+ D A + F+ LMV + D L PDV TY +++GFCK + + MEL
Sbjct: 359 DRLDEAQQIFT--LMVSK-------------DCL-PDVVTYNTLINGFCKAKKVVDGMEL 402
Query: 146 LNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCG 188
+ RG+ N VT L+ Q + G P +T+N ++ LC
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 462
Query: 189 VGKIHKALLLL 199
GK+ KA+++
Sbjct: 463 NGKLEKAMVVF 473
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 66/132 (50%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V++A + + N G++PDV+TY++++ C GR ++A LL++ +ER + NVVT
Sbjct: 256 VDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNS 315
Query: 164 LL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ + ++ P +T+N++I C ++ +A + LM
Sbjct: 316 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 375
Query: 207 KIPSRTSHDMLI 218
+P +++ LI
Sbjct: 376 CLPDVVTYNTLI 387
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L E +D+F + K S+ +F+ LL A+ + + D + F E E+L
Sbjct: 46 LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISF----------GEKMEIL- 94
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------- 165
G+ ++YTY +++ C+ + + A+ +L + ++ G ++VTL LL
Sbjct: 95 -----GVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGN 149
Query: 166 ----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q +EMG+ P T+TF ++ L K +A+ L+ M G P ++
Sbjct: 150 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 209
Query: 216 MLIKKLDQQ 224
+I L ++
Sbjct: 210 AVINGLCKR 218
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + P+V T+ +++D F K G+ EA +L +E I+R + N+VT
Sbjct: 289 GRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 348
Query: 162 IQLLQ------RLEMGH-----------IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL+ +P +T+N +I C K+ + L M
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + ++ LI Q
Sbjct: 409 RGLVGNTVTYTTLIHGFFQ 427
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+ EA ++ + G +PD+ TY A+++G CK G + A+ LLN+ + + +VV
Sbjct: 185 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYS 244
Query: 163 QLLQRL--------------EM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
++ L EM G P T++++I LC G+ A LL M E
Sbjct: 245 TVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLER 304
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
P+ + + LI ++
Sbjct: 305 KINPNVVTFNSLIDAFAKE 323
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE+ +++ ++ G+KPDV Y ++ GFCK G EA L
Sbjct: 499 GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL---------------- 542
Query: 162 IQLLQRLEMGHIPRTITFNNVIQA 185
++ E G +P + T+N +I+A
Sbjct: 543 --FIKMKEDGPLPDSGTYNTLIRA 564
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
R+ EA ++ + G +PD T+T ++ G + +++EA+ L+ + +G ++VT
Sbjct: 150 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 209
Query: 162 ---------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
+ LL ++E G I + ++ VI +LC + AL L M
Sbjct: 210 AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK 269
Query: 206 GKIPSRTSHDMLIKKL 221
G P ++ LI L
Sbjct: 270 GIRPDVFTYSSLISCL 285
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + A +L ++ ++ DV Y+ ++D CK ++A+ L E +G+ +V T
Sbjct: 219 GEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278
Query: 162 IQLLQ-----------------RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ LE P +TFN++I A GK+ +A L M +
Sbjct: 279 SSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQ 338
Query: 205 HGKIPSRTSHDMLI 218
P+ +++ LI
Sbjct: 339 RSIDPNIVTYNSLI 352
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 16/100 (16%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
KA +++ D+F S+ G V +N ++ S G EEAY
Sbjct: 497 KAGKVEDGWDLFCSLSLKGVKPDVIAYNTMI----------------SGFCKKGLKEEAY 540
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+ + +K DG PD TY ++ + G + EL+ E
Sbjct: 541 TLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKE 580
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K L +++ N ++K G V +N LL L GR +A
Sbjct: 188 KNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY----------------SGRWSDAA 231
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
ML ++ + PDV T+TA++D F K G +EA EL E I+ V
Sbjct: 232 RMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD------------- 278
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +T+N++I LC G+++ A LM G P+ +++ LI
Sbjct: 279 -----PNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLI 323
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+ S L + + + K G S+ F LL ++N R+ +A+
Sbjct: 118 RCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVN----------------RIGDAF 161
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+++ + G +P+V Y ++DG CK G N A+ELLNE ++G+ +VVT LL L
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V+E ++ + +G D++TY ++ G+C+VG+ A+++ + R VT +++T
Sbjct: 332 VDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCI 391
Query: 164 LLQRLEM-GHIPRT----------------ITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
LL L + G I + +N +I LC K+ KA L + G
Sbjct: 392 LLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEG 451
Query: 207 KIPSRTSHDMLIKKL 221
P ++ ++I L
Sbjct: 452 VKPDARTYTIMILGL 466
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
S+ DF LL A L +T + +FS + E Y G+ D+Y++T ++
Sbjct: 70 SIVDFTRLLTATANLRRYETVI-YFSQKM------ELY---------GISHDLYSFTILI 113
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190
FC+ R + A+ +L + +++G+ P +TF +++ C V
Sbjct: 114 HCFCRCSRLSFALSVLG------------------KMMKLGYEPSIVTFGSLLHGFCLVN 155
Query: 191 KIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+I A L+ LM + G P+ ++ LI L
Sbjct: 156 RIGDAFSLVILMVKSGYEPNVVVYNTLIDGL 186
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 18/122 (14%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M GR+ +A + + + G P+V TY ++ GFCK +E M+L G ++
Sbjct: 293 MHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADI- 351
Query: 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T+N +I C VGK+ AL + M P +H +L+
Sbjct: 352 -----------------FTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLH 394
Query: 220 KL 221
L
Sbjct: 395 GL 396
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+VE+A+E+ + +G+KPD TYT ++ G CK G EA EL+ E G+
Sbjct: 436 KVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + M R++EA M + + P+V TY +++GFCK R +E +EL E
Sbjct: 367 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREM 426
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
+RG+ N VT L+ Q + G P +T+N ++ LC GK+
Sbjct: 427 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKL 486
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KA+++ + P+ +++++I+ +
Sbjct: 487 EKAMVVFEYLQRSKMEPTIYTYNIMIEGM 515
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 33/189 (17%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112
L + I +F + K S+ +FN LL A+ + + D + + E + L
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVIS----------LGEKMQRL- 114
Query: 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL------- 165
G+ ++YTY +++ FC+ + + A+ LL + ++ G ++VTL LL
Sbjct: 115 -----GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169
Query: 166 ----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215
Q +EMG+ P TITF +I L K +A+ L+ M + G P+ ++
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 216 MLIKKLDQQ 224
+++ L ++
Sbjct: 230 VVVNGLCKR 238
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 17/131 (12%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
++A + ++N G++P+V TY++++ C R ++A LL++ IER + NVVT L
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL 336
Query: 165 L------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ ++L I R+I T++++I C ++ +A + LM
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396
Query: 208 IPSRTSHDMLI 218
P+ +++ LI
Sbjct: 397 FPNVVTYNTLI 407
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------------SNHLMV---- 101
+F + DG + ++ +N LL L + + A+ F + ++M+
Sbjct: 457 VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 516
Query: 102 --GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
G+VE+ +++ ++ G+KPDV Y ++ GFC+ G EA L + E G
Sbjct: 517 KAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
R+ +A ++ + G +PD T+T ++ G +++EA+ L++ ++RG N+VT
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 162 ---------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205
LL ++E I + ++ VI +LC AL L M
Sbjct: 230 VVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 289
Query: 206 GKIPSRTSHDMLIKKL 221
G P+ ++ LI L
Sbjct: 290 GVRPNVITYSSLISCL 305
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A+ +L ++ ++ +V Y+ ++D CK ++A+ L E +GV NV+T
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 298
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
L+ L E P +TFN +I A GK+ +A
Sbjct: 299 SSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEA 349
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + M R++EA M + + P+V TY ++ GFCK R E MEL E
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421
Query: 150 IERGVTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKI 192
+RG+ N VT L+Q L G P IT++ ++ LC GK+
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 481
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
KAL++ + + P +++++I+ +
Sbjct: 482 EKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 37/190 (19%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL--------- 99
KA ++E +++F + + G + +N L+ L + D A K F +
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466
Query: 100 ----------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G++E+A + ++ ++PD+YTY +++G CK G+ + +L
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209
+GV NV I + +I C G +A L M E G +P
Sbjct: 527 SLKGVKPNV------------------IIYTTMISGFCRKGLKEEADALFREMKEDGTLP 568
Query: 210 SRTSHDMLIK 219
+ +++ LI+
Sbjct: 569 NSGTYNTLIR 578
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + P+V T++A++D F K G+ EA +L +E I+R + ++ T
Sbjct: 304 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363
Query: 162 IQLLQ------RL-EMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL E H+ P +T+N +I+ C ++ + + L M +
Sbjct: 364 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ 423
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + +++ LI+ L Q
Sbjct: 424 RGLVGNTVTYNTLIQGLFQ 442
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A + + N G++P+V TY +++ C GR ++A LL++ IER + NVVT
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330
Query: 164 LL------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ ++L I R+I T++++I C ++ +A + LM
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390
Query: 207 KIPSRTSHDMLIK 219
P+ +++ LIK
Sbjct: 391 CFPNVVTYNTLIK 403
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 33/161 (20%)
Query: 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134
FN L+ L + N+ AV MV R G +PD++TY +++G C
Sbjct: 188 FNTLIHGLFLHNKASEAVALIDR--MVAR--------------GCQPDLFTYGTVVNGLC 231
Query: 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL--------------EM---GHIPRTI 177
K G + A+ LL + + + +VV ++ L EM G P +
Sbjct: 232 KRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 291
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
T+N++I+ LC G+ A LL M E P+ + LI
Sbjct: 292 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 332
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 37/194 (19%)
Query: 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------------FSNHL 99
L + +D+F + + S+ +FN LL A+ +N+ D + +S ++
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 100 MV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
++ ++ A +L + G +PD+ T +++++G+C R +EA+ L+++
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 154 VTQNVVTLIQLLQRLEM-----------------GHIPRTITFNNVIQALCGVGKIHKAL 196
N VT L+ L + G P T+ V+ LC G I AL
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 197 LLLFLMYEHGKIPS 210
LL M E GKI +
Sbjct: 241 SLLKKM-EKGKIEA 253
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 44/207 (21%)
Query: 21 SRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLM 80
+S ++A +LDL R ++ + IKAS ++ I + +S+ KDG+ F+D
Sbjct: 221 CKSGNSALALDL---FRKMEER----NIKASVVQYSI-VIDSLCKDGS------FDD--- 263
Query: 81 ALVMLNEQD---------TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131
AL + NE + T G+ ++ +ML + + PDV T++A++D
Sbjct: 264 ALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALID 323
Query: 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191
F K G+ EA EL NE I RG+ P TIT+N++I C
Sbjct: 324 VFVKEGKLLEAKELYNEMITRGIA------------------PDTITYNSLIDGFCKENC 365
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
+H+A + LM G P ++ +LI
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILI 392
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL- 161
RV++ + + + GL P+ TY ++ GFC+ G+ N A EL E + RGV +VVT
Sbjct: 400 RVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG 459
Query: 162 ---------------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEH 205
+++ ++++ + I +N +I +C K+ A L + +
Sbjct: 460 ILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK 519
Query: 206 GKIPSRTSHDMLIKKLDQQ 224
G P +++++I L ++
Sbjct: 520 GVKPDVVTYNVMIGGLCKK 538
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ EA +M + + G +PD+ TY+ +++ +CK R ++ M L E +G+
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL--------- 416
Query: 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
IP TIT+N ++ C GK++ A L M G PS ++ +L+ L
Sbjct: 417 ---------IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 465
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 37/199 (18%)
Query: 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV 101
+R + I + + ID+F S+ + + DFN L A+ + D + F +
Sbjct: 40 ERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELN 99
Query: 102 GRVEEAYEMLMNVK-------------------NDGLKPDVYTYTAIMDGFCKVGRSNEA 142
G + Y M + + G +PD T++ +++GFC GR +EA
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 159
Query: 143 MELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ L++ + EM P +T + +I LC G++ +AL+L+ M
Sbjct: 160 VALVDRMV------------------EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 201
Query: 203 YEHGKIPSRTSHDMLIKKL 221
E+G P ++ ++ +L
Sbjct: 202 VEYGFQPDEVTYGPVLNRL 220
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ A E+ + + G+ P V TY ++DG C G N+A+E+ + + +T +
Sbjct: 434 GKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIY 493
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++ + + G P +T+N +I LC G + +A +L M E
Sbjct: 494 NIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553
Query: 205 HGKIPSRTSHDMLIK 219
G P ++++LI+
Sbjct: 554 DGCTPDDFTYNILIR 568
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A+ + ++ + G+KPDV TY ++ G CK G +EA L + E G T + T
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTY- 563
Query: 163 QLLQRLEMG 171
+L R +G
Sbjct: 564 NILIRAHLG 572
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA ++ + +PD+ T + +++G C GR +EA+ L++ +E G + VT
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213
Query: 162 ----------------IQLLQRLEMGHIPRTIT-FNNVIQALCGVGKIHKALLLLFLMYE 204
+ L +++E +I ++ ++ VI +LC G AL L M
Sbjct: 214 GPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEM 273
Query: 205 HGKIPSRTSHDMLIKKL 221
G ++ LI L
Sbjct: 274 KGIKADVVTYSSLIGGL 290
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G++ EA E+ + G+ PD TYT+++DGFCK + ++A +L+ + +G N+ T
Sbjct: 331 GKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTF 390
Query: 162 ----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++L +++ + G + T+T+N +IQ C +GK+ A L M
Sbjct: 391 NILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVS 450
Query: 205 HGKIPSRTSHDMLIKKL 221
P S+ +L+ L
Sbjct: 451 RRVRPDIVSYKILLDGL 467
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++ A+ + ++ G K D+ YT ++ GFC GR ++ +LL + I+R +T +VV
Sbjct: 261 GSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAF 320
Query: 162 IQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ + ++ G P T+T+ ++I C ++ KA +L LM
Sbjct: 321 SALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVS 380
Query: 205 HGKIPSRTSHDMLI 218
G P+ + ++LI
Sbjct: 381 KGCGPNIRTFNILI 394
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 18/113 (15%)
Query: 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166
A+ + + G +PD T++ +++G C GR +EA+EL++ +
Sbjct: 126 AFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV---------------- 169
Query: 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
EMGH P IT N ++ LC GK+ A+LL+ M E G P+ ++ ++K
Sbjct: 170 --EMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLK 220
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 19/137 (13%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-------G 153
+G++E A E+ + + ++PD+ +Y ++DG C G +A+E+ E IE+ G
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIF-EKIEKSKMELDIG 493
Query: 154 VTQNVVTLIQLLQRLE-----------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202
+ ++ + +++ G P T+N +I LC G + +A LL M
Sbjct: 494 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKM 553
Query: 203 YEHGKIPSRTSHDMLIK 219
E G P+ ++++LI+
Sbjct: 554 EEDGHSPNGCTYNILIR 570
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 18/97 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A+++ ++ G+KPDV TY ++ G CK G +EA +LL +E
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEA-DLLFRKME----------- 554
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
E GH P T+N +I+A G G K+ L+
Sbjct: 555 ------EDGHSPNGCTYNILIRAHLGEGDATKSAKLI 585
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA E++ + G KP + T A+++G C G+ ++A+ L++ +E G N VT
Sbjct: 156 GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY 215
Query: 162 ----------------IQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKAL 196
++LL+++E I + ++ +I LC G + A
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAF 267
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 18/104 (17%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G+ ++YT + +++ C+ + + A + + I+ +G+ P T+
Sbjct: 102 GIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIK------------------LGYEPDTV 143
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TF+ +I LC G++ +AL L+ M E G P+ + + L+ L
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGL 187
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
+ A E+ + +G +P+V TY A++ G C++GR +A LL + ++R + NV+T
Sbjct: 204 LNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTA 263
Query: 164 LLQR-----------------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ ++M P T+ ++I LC G + +A + +LM +G
Sbjct: 264 LIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNG 323
Query: 207 KIPSRTSHDMLI 218
P+ + LI
Sbjct: 324 CYPNEVIYTTLI 335
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159
M G ++EA +M ++ +G P+ YT ++ GFCK R + M++ E ++GV N +
Sbjct: 305 MYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTI 364
Query: 160 TLIQLLQ----------------RLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLL 199
T L+Q ++ P I T+N ++ LC GK+ KAL++
Sbjct: 365 TYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIF 421
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 88/218 (40%), Gaps = 41/218 (18%)
Query: 23 SPSAAESLDLKENPRSLQAQRFVDKIKASPL-----KERIDIFNSIKKDGTNWSVSDFND 77
+P A SL L ++A KI + L + +D+F + S+ DF
Sbjct: 29 NPRTAASLSLCGFCFWIRAFSSYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTR 88
Query: 78 LLMALVMLNEQDTAVKFFSNHLMVG-------------------RVEEAYEMLMNVKNDG 118
LL + +N D + F ++G + A L + G
Sbjct: 89 LLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLG 148
Query: 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---------- 168
+PD+ T+T++++G+C R +A+ L ++ + G NVVT L++ L
Sbjct: 149 FEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAV 208
Query: 169 ----EM---GHIPRTITFNNVIQALCGVGKIHKALLLL 199
+M G P +T+N ++ LC +G+ A LL
Sbjct: 209 ELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLL 246
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + + R+E+A + + G KP+V TYT ++ CK N A+EL N+
Sbjct: 155 TFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQM 214
Query: 150 IERGVTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKI 192
G NVVT L+ L E+G P ITF +I A VGK+
Sbjct: 215 GTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKL 274
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A L +M + P ++ LI L
Sbjct: 275 MEAKELYNVMIQMSVYPDVFTYGSLINGL 303
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + +VGR + A E+ + + PD+ TY ++DG C G+ +A+ +
Sbjct: 365 TYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYM 424
Query: 150 IERGVTQNVVTLIQLLQRL-EMGHI----------------PRTITFNNVIQALCGVGKI 192
+R + N+VT ++Q + ++G + P IT+ +I C G I
Sbjct: 425 RKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLI 484
Query: 193 HKALLLLFLMYEHGKIPSRTSH 214
H+A L M E G +P+ + +
Sbjct: 485 HEADSLFKKMKEDGFLPNESVY 506
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER---------- 152
RVE+ ++ + G+ + TYT ++ G+C VGR + A E+ N+ R
Sbjct: 343 RVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYN 402
Query: 153 ---------GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203
G + + + + +++ EM +T+ +IQ +C +GK+ A L ++
Sbjct: 403 VLLDGLCCNGKVEKALMIFEYMRKREMD--INIVTYTIIIQGMCKLGKVEDAFDLFCSLF 460
Query: 204 EHGKIPSRTSHDMLIKKLDQQ 224
G P+ ++ +I ++
Sbjct: 461 SKGMKPNVITYTTMISGFCRR 481
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EAY+ L + G+ PD +Y ++DGFCKVG A L++E E + + + L
Sbjct: 177 GLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITHTILL 236
Query: 162 IQL--LQRLE--------MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211
L +E G P +TF+++I LC GK+ + LLL M E P+
Sbjct: 237 SSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNH 296
Query: 212 TSHDMLIKKL 221
++ L+ L
Sbjct: 297 VTYTTLVDSL 306
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G ++E + L +K+ G++PD +TY A++ G K+G +M + E I G+
Sbjct: 764 GLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGL------- 816
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+P+T T+N +I VGK+ +A LL M + G P+ +++ +I L
Sbjct: 817 -----------VPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGL 865
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 20/111 (18%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL--- 161
E+ ++ML+ D P+V TYTA++DG CK G + A ++ + +E+ V NVVT
Sbjct: 351 EKTFKMLLE---DNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSM 407
Query: 162 -------------IQLLQRLE-MGHIPRTITFNNVIQALCGVGKIHKALLL 198
+ LL+++E +P T+ VI L GK A+ L
Sbjct: 408 INGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIEL 458
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELL-NEAIE-RGVTQNVVT-----------LIQL 164
G+ PDV+ ++ FCKVGR + A+ LL N I VT N V Q
Sbjct: 126 GVSPDVFALNVLIHSFCKVGRLSFAISLLRNRVISIDTVTYNTVISGLCEHGLADEAYQF 185
Query: 165 LQRL-EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
L + +MG +P T+++N +I C VG +A L+
Sbjct: 186 LSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALV 221
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+V E +L ++ + P+ TYT ++D K A+ L ++ + RG+ ++V
Sbjct: 275 GKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVY 334
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ L E +P +T+ ++ LC G + A ++ M E
Sbjct: 335 TVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLE 394
Query: 205 HGKIPSRTSHDMLI 218
IP+ ++ +I
Sbjct: 395 KSVIPNVVTYSSMI 408
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 90 TAVKFFSNHLMVGRVEEAY-EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T S++ + +EEAY +M+M+ G PDV T+++I++ CK G+ E LL E
Sbjct: 231 THTILLSSYYNLHAIEEAYRDMVMS----GFDPDVVTFSSIINRLCKGGKVLEGGLLLRE 286
Query: 149 AIERGVTQNVVTLIQLLQRLEMGHIPR 175
E V N VT L+ L +I R
Sbjct: 287 MEEMSVYPNHVTYTTLVDSLFKANIYR 313
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT---QNV 158
G++EEA +L + + P++ TY +D K R++ + + G+ Q
Sbjct: 624 GKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVY 683
Query: 159 VTLIQLLQRLEM--------------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
TLI L +L M G IP T+TFN+++ + KAL +M E
Sbjct: 684 NTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMME 743
Query: 205 HGKIPSRTSHDMLIKKL 221
G P+ +++ +I+ L
Sbjct: 744 AGISPNVATYNTIIRGL 760
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155
S +G ++ + + + DGL P TY ++ F VG+ +A ELL E +RGV+
Sbjct: 793 SGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVS 852
Query: 156 QNVVTLIQLLQRL 168
N T ++ L
Sbjct: 853 PNTSTYCTMISGL 865
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G +EEA +L +++ + P+ +TY ++DG K G+ A+EL E GV +N L
Sbjct: 415 GMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYIL 474
Query: 162 IQLLQRLE 169
L+ L+
Sbjct: 475 DALVNHLK 482
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 33/176 (18%)
Query: 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119
+ +++ G ++ FN +M+N Q G E ++ +K+ G+
Sbjct: 563 YKGMREKGIEPDIATFN------IMMNSQRKQ----------GDSEGILKLWDKMKSCGI 606
Query: 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR------------ 167
KP + + ++ C+ G+ EA+ +LN+ + + N+ T L
Sbjct: 607 KPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFK 666
Query: 168 -----LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
L G +N +I LC +G KA +++ M G IP + + L+
Sbjct: 667 THETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLM 722
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 80 MALVMLNEQDTAVKFFSNHL-MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138
M L+ + E + + NHL +GR++E ++ ++ + G+ D YT+++D F K G
Sbjct: 462 MRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGD 521
Query: 139 SNEAMELLNEAIERGVTQNVVT 160
A+ E ERG+ +VV+
Sbjct: 522 EEAALAWAEEMQERGMPWDVVS 543
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
K +K + I+ + DG S +N V+++E F+N VG++ +A
Sbjct: 797 KIGNMKGSMTIYCEMIADGLVPKTSTYN------VLISE-------FAN---VGKMLQAR 840
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKV 136
E+L + G+ P+ TY ++ G CK+
Sbjct: 841 ELLKEMGKRGVSPNTSTYCTMISGLCKL 868
>sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250,
mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2
SV=2
Length = 971
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 17/111 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---V 158
G VEEA +L + +G++P++ TYTAI+ G CK+G+ EA L N + G+ +
Sbjct: 291 GNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLY 350
Query: 159 VTLIQLLQRL--------------EMGHIPRTITFNNVIQALCGVGKIHKA 195
VTLI + R + G P +T+N VI LC G++ +A
Sbjct: 351 VTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEA 401
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 103 RVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
R +AY +++N L DV YT I++G CK G +A+ L + A RGVT N
Sbjct: 634 RSLDAYLLVVNAGETTLSSMDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLN---- 689
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TIT+N++I LC G + +AL L + G +PS ++ +LI L
Sbjct: 690 --------------TITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNL 735
Query: 222 DQQ 224
++
Sbjct: 736 CKE 738
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 25/127 (19%)
Query: 80 MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS 139
M LVM N +K F L++G EA + + L PD TY ++ G+CK G+
Sbjct: 445 MDLVMCN---ILLKAF---LLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQI 498
Query: 140 NEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
EA+E+ NE L + + +N +I ALC G + A +L
Sbjct: 499 EEALEMFNE-------------------LRKSSVSAAVCYNRIIDALCKKGMLDTATEVL 539
Query: 200 FLMYEHG 206
++E G
Sbjct: 540 IELWEKG 546
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-EMGHIPRT 176
G+ DV +Y+ ++DG K G EA+ LL + I+ GV N++T +++ L +MG +
Sbjct: 272 GMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEA 331
Query: 177 -ITFNNV---------------IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220
+ FN + I +C G +++A +L M + G PS +++ +I
Sbjct: 332 FVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVING 391
Query: 221 L 221
L
Sbjct: 392 L 392
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 87/202 (43%), Gaps = 31/202 (15%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-RVEE- 106
K ++E + + + K+G ++ + ++ L + + + A F+ L VG V+E
Sbjct: 289 KEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEF 348
Query: 107 -----------------AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
A+ ML +++ G++P + TY +++G C GR +EA E+
Sbjct: 349 LYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADEVSKGV 408
Query: 150 IERGVT-----------QNVVTLIQLLQRLEMGHIPRTITFNNV-IQALCGVGKIHKALL 197
+ +T QN+ ++++ +R IP + N+ ++A +G +A
Sbjct: 409 VGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADA 468
Query: 198 LLFLMYEHGKIPSRTSHDMLIK 219
L M E P ++ +IK
Sbjct: 469 LYRAMPEMDLTPDTATYATMIK 490
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 31/141 (21%)
Query: 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111
P K + + + ++ G S F L+ V E D A+ E EM+
Sbjct: 114 PSKGLLILRDCLRNHGAFPSSLTFCSLIYRFVEKGEMDNAI-------------EVLEMM 160
Query: 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171
N KN D + +A++ GFCK+G+ A+ A++ GV
Sbjct: 161 TN-KNVNYPFDNFVCSAVISGFCKIGKPELALGFFESAVDSGVL---------------- 203
Query: 172 HIPRTITFNNVIQALCGVGKI 192
+P +T+ ++ ALC +GK+
Sbjct: 204 -VPNLVTYTTLVSALCQLGKV 223
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + EA + +++N GL P TY ++D CK G +A +LL+ + +G+ N++
Sbjct: 704 GCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIY 763
Query: 162 ----------------IQLLQRLEMGHI-PRTITFNNVIQALCGVGKIHKAL 196
++++ R MG + P T +++I+ C G + +AL
Sbjct: 764 NSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEAL 815
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN----EQDTAVKF 94
L A++ +D + + L I I+NSI ++ +++ M+ + T
Sbjct: 742 LDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSM 801
Query: 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154
+ G +EEA + K+ + D + + ++ GFC GR EA LL E + V
Sbjct: 802 IKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREML---V 858
Query: 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
+++VV LI + + + + + LC G++ +A+ +L
Sbjct: 859 SESVVKLINRVD----AELAESESIRGFLVELCEQGRVPQAIKIL 899
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 18/134 (13%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + G++EEA EM ++ + V Y I+D CK G + A E+L E
Sbjct: 484 TYATMIKGYCKTGQIEEALEMFNELRKSSVSAAV-CYNRIIDALCKKGMLDTATEVLIEL 542
Query: 150 IERGVTQNVVTLIQLLQRLEMGHIPRTI-----------------TFNNVIQALCGVGKI 192
E+G+ ++ T LL + + I N+ I LC G
Sbjct: 543 WEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDVCLGMLNDAILLLCKRGSF 602
Query: 193 HKALLLLFLMYEHG 206
A+ + +M G
Sbjct: 603 EAAIEVYMIMRRKG 616
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G + +A + K+ G+ + TY ++++G C+ G EA+ L + G+ + VT
Sbjct: 669 GFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTY 728
Query: 162 IQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGKIHKAL 196
L+ L G +P I +N+++ C +G+ A+
Sbjct: 729 GILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAM 780
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 40/222 (18%)
Query: 33 KENPRSLQAQRFVDKIK----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88
K NP ++ + FV ++ A+ +K+ +++ + + K G F LL AL
Sbjct: 159 KTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSV 218
Query: 89 DTAVKFFSN------------------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130
A K F + G++ EA E+L+ +K GL+PD+ +T ++
Sbjct: 219 KEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLL 278
Query: 131 DGFCKVGRSNEAMELLNEAIERGVTQNV---VTLIQLLQRLE---------------MGH 172
G+ G+ +A +L+N+ +RG NV LIQ L R E G
Sbjct: 279 SGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGC 338
Query: 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214
+T+ +I C G I K +L M + G +PS+ ++
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTY 380
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 90/192 (46%), Gaps = 32/192 (16%)
Query: 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109
A + + D+ N ++K G +V+ + L+ AL + R++EA
Sbjct: 284 AGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEK---------------RMDEAMR 328
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---- 165
+ + ++ G + D+ TYTA++ GFCK G ++ +L++ ++GV + VT +Q++
Sbjct: 329 VFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHE 388
Query: 166 ------QRLEM-------GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212
+ LE+ G P + +N VI+ C +G++ +A+ L M +G P
Sbjct: 389 KKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVD 448
Query: 213 SHDMLIKKLDQQ 224
+ ++I Q
Sbjct: 449 TFVIMINGFTSQ 460
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 16/134 (11%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE------RGVTQN 157
V++A E+L + GL+PD Y + ++D CK G EA ++ + E R T
Sbjct: 183 VKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSL 242
Query: 158 VVTLIQ----------LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
+ + L+Q E G P + F N++ GK+ A L+ M + G
Sbjct: 243 LYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGF 302
Query: 208 IPSRTSHDMLIKKL 221
P+ + +LI+ L
Sbjct: 303 EPNVNCYTVLIQAL 316
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 21/144 (14%)
Query: 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV--TQNV 158
+G V+EA + ++ +GL P V T+ +++GF G EA E + RG+
Sbjct: 425 LGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQY 484
Query: 159 VTLIQLLQ------RLEMGHIPRTITFNNV-------------IQALCGVGKIHKALLLL 199
TL LL +LEM + N I AL G + +A
Sbjct: 485 GTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACSYC 544
Query: 200 FLMYEHGKIPSRTSHDMLIKKLDQ 223
M E +P ++ L+K L++
Sbjct: 545 LDMMEMDLMPQPNTYAKLMKGLNK 568
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Query: 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
T + M R++EA M + + P+V TY ++ GFCK R +E MEL E
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREM 422
Query: 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKI 192
+RG+ N VT L+ Q + G +P +T++ ++ LC GK+
Sbjct: 423 SQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKV 482
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
AL++ + P +++++I+ +
Sbjct: 483 ETALVVFEYLQRSKMEPDIYTYNIMIEGM 511
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163
V +A + + N G++P+V TY +++ C GR ++A LL++ IER + NVVT
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331
Query: 164 LL------------QRLEMGHIPRTI-----TFNNVIQALCGVGKIHKALLLLFLMYEHG 206
L+ ++L I R+I T++++I C ++ +A + LM
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 391
Query: 207 KIPSRTSHDMLIK 219
P+ +++ LIK
Sbjct: 392 CFPNVVTYNTLIK 404
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GR +A +L ++ + P+V T++A++D F K G+ EA +L +E I+R + ++ T
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 364
Query: 162 IQLLQ------RL-EMGHI----------PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204
L+ RL E H+ P +T+N +I+ C ++ + + L M +
Sbjct: 365 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQ 424
Query: 205 HGKIPSRTSHDMLIKKLDQ 223
G + + ++ LI Q
Sbjct: 425 RGLVGNTVTYTTLIHGFFQ 443
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 95/197 (48%), Gaps = 33/197 (16%)
Query: 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV 104
++++ L + +++F + K S+ +F+ LL A+ +N+ D L++
Sbjct: 54 INRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFD---------LVISLG 104
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164
E+ ++N G+ ++YTY+ +++ FC+ + + A+ +L + ++ G ++VTL L
Sbjct: 105 EQ-------MQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSL 157
Query: 165 L-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207
L Q +EMG+ P + TFN +I L + +A+ L+ M G
Sbjct: 158 LNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGC 217
Query: 208 IPSRTSHDMLIKKLDQQ 224
P ++ +++ L ++
Sbjct: 218 QPDLVTYGIVVNGLCKR 234
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
G+VE A + ++ ++PD+YTY +++G CK G+ + +L +GV NVV
Sbjct: 480 GKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVV-- 537
Query: 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219
T+ ++ C G +A L M E G +P +++ LI+
Sbjct: 538 ----------------TYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIR 579
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 27/156 (17%)
Query: 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVG-----RVEEAYEMLMNVKNDGLKPDVYTY 126
+SD L+ +V + Q + F N L+ G R EA ++ + G +PD+ TY
Sbjct: 167 ISDAVSLVGQMVEMGYQPDSFTF--NTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTY 224
Query: 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI-PRTITFNNVIQA 185
+++G CK G + A+ LL+++E G I P + +N +I A
Sbjct: 225 GIVVNGLCKRGDIDLAL-------------------SLLKKMEQGKIEPGVVIYNTIIDA 265
Query: 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
LC ++ AL L M G P+ +++ LI+ L
Sbjct: 266 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 90/209 (43%), Gaps = 36/209 (17%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV------- 101
K L ++FN ++ G ++ +N L+ D K + +
Sbjct: 275 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVV 334
Query: 102 ------------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149
G++ EA E+ + + G+ PD TYT+++DGFCK ++A ++++
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 394
Query: 150 IERGVTQNVVTL----------------IQLLQRLEM-GHIPRTITFNNVIQALCGVGKI 192
+ +G N+ T ++L +++ + G + T+T+N +IQ C +GK+
Sbjct: 395 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 454
Query: 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+ A L M P+ ++ +L+ L
Sbjct: 455 NVAKELFQEMVSRKVPPNIVTYKILLDGL 483
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 35/181 (19%)
Query: 44 FVDKIKASPLKERID---IFNSIKKDGTNWSVSDFNDLLMALVMLNE-QDTAVKFFSNHL 99
F D I + PL ID +F++I K + DL++AL E + A ++ +
Sbjct: 76 FRDMIHSRPLPTVIDFSRLFSAIAK-------TKQYDLVLALCKQMELKGIAHNLYTLSI 128
Query: 100 MVG------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
M+ ++ A+ + + G +P+ T++ +++G C GR +EA+EL++ +
Sbjct: 129 MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV--- 185
Query: 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213
EMGH P IT N ++ LC GK +A+LL+ M E+G P+ +
Sbjct: 186 ---------------EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVT 230
Query: 214 H 214
+
Sbjct: 231 Y 231
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153
+ + R+++ E+ + G+ D TY ++ GFC++G+ N A EL E + R
Sbjct: 409 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 468
Query: 154 VTQNVVTL----------------IQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKAL 196
V N+VT +++ +++E + I +N +I +C K+ A
Sbjct: 469 VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 528
Query: 197 LLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224
L + G P +++++I L ++
Sbjct: 529 DLFCSLPLKGVKPGVKTYNIMIGGLCKK 556
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161
GRV EA E++ + G KPD+ T +++G C G+ EAM L+++ +E G N VT
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 231
Query: 162 ----------------IQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYE 204
++LL+++E +I + ++ +I LC G + A L M
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEM 291
Query: 205 HGKIPSRTSHDMLI 218
G + ++++LI
Sbjct: 292 KGITTNIITYNILI 305
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 18/97 (18%)
Query: 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162
+V++A+++ ++ G+KP V TY ++ G CK G +EA ELL +E
Sbjct: 523 KVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA-ELLFRKME----------- 570
Query: 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199
E GH P T+N +I+A G G K++ L+
Sbjct: 571 ------EDGHAPDGWTYNILIRAHLGDGDATKSVKLI 601
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177
G+ ++YT + +++ FC+ + A + + I+ +G+ P TI
Sbjct: 118 GIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIK------------------LGYEPNTI 159
Query: 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
TF+ +I LC G++ +AL L+ M E G P + + L+ L
Sbjct: 160 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 203
Score = 37.7 bits (86), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQDT 90
L +N S +A +KI+ S ++ I I+N I N S V D DL +L L
Sbjct: 483 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP-LKGVKP 541
Query: 91 AVKFFSNHLMVGRV------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144
VK + ++M+G + EA + ++ DG PD +TY ++ G + ++++
Sbjct: 542 GVKTY--NIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVK 599
Query: 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176
L+ E G + + T+ ++ L G + ++
Sbjct: 600 LIEELKRCGFSVDASTIKMVIDMLSDGRLKKS 631
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF---------- 95
D KA L + +++F+ + + G V+ +N L+ + + TA++ +
Sbjct: 193 DLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVY 252
Query: 96 ----SNHLMV------GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145
++++M+ GRV++ ++ +K + + D+YTY++++ G C G ++A +
Sbjct: 253 PNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESV 312
Query: 146 LNEAIERGVTQNVVTL----------------IQLLQRLEMGHIPRTITFNNVIQALCGV 189
NE ER + +VVT ++L + +E + +++N +I+ L
Sbjct: 313 FNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNILIKGLLEN 372
Query: 190 GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
GKI +A ++ LM G +T++ + I L
Sbjct: 373 GKIDEATMIWRLMPAKGYAADKTTYGIFIHGL 404
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 90 TAVKFFSNHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
T F + L V G V +A ++ V++ G DVY Y +I+D CK R EA L+ E
Sbjct: 395 TTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKE 454
Query: 149 AIERGVTQNVVTLIQLLQRL--------------EMGH---IPRTITFNNVIQALCGVGK 191
+ GV N L+ L EMG P +++N +I LC GK
Sbjct: 455 MSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGK 514
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221
+A + M E+G P ++ +L+ L
Sbjct: 515 FGEASAFVKEMLENGWKPDLKTYSILLCGL 544
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 36/208 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG----- 102
I+ S L E + K+G +V +N L+ L + A F L G
Sbjct: 475 IRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDL 534
Query: 103 --------------RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
+++ A E+ GL+ DV + ++ G C VG+ ++AM ++
Sbjct: 535 KTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMAN 594
Query: 149 AIERGVTQNVVTLIQLLQRL-----------------EMGHIPRTITFNNVIQALCGVGK 191
R T N+VT L++ +MG P I++N +++ LC
Sbjct: 595 MEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRG 654
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLIK 219
+ A+ HG P+ + ++L++
Sbjct: 655 VSYAMEFFDDARNHGIFPTVYTWNILVR 682
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV----- 159
E+A L + +G KPDV++Y+ +++ K G+ ++A+EL +E ERGV +V
Sbjct: 166 EKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNIL 225
Query: 160 -----------TLIQLLQRL--EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
T ++L RL + P T N +I L G++ L + M ++
Sbjct: 226 IDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNE 285
Query: 207 KIPSRTSHDMLIKKL 221
+ ++ LI L
Sbjct: 286 REKDLYTYSSLIHGL 300
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 35/229 (15%)
Query: 4 SAANSPTPFSVLLVDSPSRSPSAAESL--------DLKENPRSLQAQRFVDKIKASPLKE 55
S N F+ L DS +R P A S L E R V+ I++ K
Sbjct: 19 SEKNPRAAFA--LFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKC 76
Query: 56 RIDI-FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE-----EAYE 109
D+ + IK G N D+ + + + A++ + N L+ VE +
Sbjct: 77 DEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSY-NTLLNAFVEAKQWVKVES 135
Query: 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169
+ + G+ P++ TY ++ CK +A L+ + G
Sbjct: 136 LFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFK-------------- 181
Query: 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLI 218
P +++ VI L GK+ AL L M E G P T +++LI
Sbjct: 182 ----PDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILI 226
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 36/166 (21%)
Query: 59 IFNSIKKDGTNWSVSDFNDLL------------MALVMLNEQDTAVKFFSNHLMV----- 101
+FN + + + V +N +L + L + E +V S ++++
Sbjct: 312 VFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNILIKGLLE 371
Query: 102 -GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT 160
G+++EA + + G D TY + G C G N+A+ ++ E G
Sbjct: 372 NGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSG------- 424
Query: 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206
GH+ + ++I LC ++ +A L+ M +HG
Sbjct: 425 ----------GHLD-VYAYASIIDCLCKKKRLEEASNLVKEMSKHG 459
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 33/189 (17%)
Query: 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEA 107
+K L E IF+ G + + L++ +LN Q R E
Sbjct: 366 LKGHDLVETCRIFDGFVSRGVKPGFNGY--LVLVQALLNAQ--------------RFSEG 409
Query: 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-- 165
L + DGL VY+Y A++D CK R A L E +RG++ N+VT L
Sbjct: 410 DRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSG 469
Query: 166 ---------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210
+ L G P ITF+ +I LC +I A M E G P+
Sbjct: 470 YSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPN 529
Query: 211 RTSHDMLIK 219
++++LI+
Sbjct: 530 EITYNILIR 538
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 35/174 (20%)
Query: 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108
+A +K+ D F + + G + +N L+ + + D +VK F+
Sbjct: 507 RAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAK----------- 555
Query: 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL 168
+K +GL PD+Y Y A + FCK+ + +A ELL L
Sbjct: 556 -----MKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTM------------------L 592
Query: 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222
+G P T++ +I+AL G+ +A + + HG +P + L+++LD
Sbjct: 593 RIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTK-RLVEELD 645
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA-VKF------------FSNHLMV--- 101
D+F I G S +N ++ ALV N D A +KF F+ ++++
Sbjct: 166 DVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGV 225
Query: 102 ---GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158
G V+EA ++ ++ +G +P+V+TYT ++DGF GR +EA++ L R + N
Sbjct: 226 CKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNE 285
Query: 159 VTL 161
T+
Sbjct: 286 ATI 288
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 20/147 (13%)
Query: 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148
D + SN+ M +E + L + G PD T+ A M K E + +
Sbjct: 324 DAVLYCLSNNSMA---KETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDG 380
Query: 149 AIERGVT---QNVVTLIQLL---QRLEMGH-----------IPRTITFNNVIQALCGVGK 191
+ RGV + L+Q L QR G + ++N VI LC +
Sbjct: 381 FVSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARR 440
Query: 192 IHKALLLLFLMYEHGKIPSRTSHDMLI 218
I A + L M + G P+ + + +
Sbjct: 441 IENAAMFLTEMQDRGISPNLVTFNTFL 467
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,446,994
Number of Sequences: 539616
Number of extensions: 2991735
Number of successful extensions: 12745
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 9767
Number of HSP's gapped (non-prelim): 1853
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)