Query 045820
Match_columns 225
No_of_seqs 193 out of 1460
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 05:49:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.5E-39 1.2E-43 282.6 24.2 214 12-225 474-768 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.8E-39 1.9E-43 281.4 24.3 217 6-222 537-800 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.3E-36 2.9E-41 262.9 22.4 219 7-225 154-440 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.5E-35 3.2E-40 256.4 21.4 208 11-225 260-508 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.5E-34 7.7E-39 252.9 22.0 215 11-225 122-403 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.1E-32 2.4E-37 243.4 21.9 214 11-225 223-503 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 6E-17 1.3E-21 92.4 6.6 50 174-223 1-50 (50)
8 KOG4422 Uncharacterized conser 99.6 2.4E-14 5.2E-19 112.5 17.0 179 40-225 118-326 (625)
9 PF13041 PPR_2: PPR repeat fam 99.6 1.6E-15 3.6E-20 86.4 6.7 50 121-188 1-50 (50)
10 PRK11788 tetratricopeptide rep 99.5 1.7E-12 3.7E-17 105.6 19.7 208 11-222 70-326 (389)
11 PRK11788 tetratricopeptide rep 99.5 2.8E-12 6E-17 104.4 18.9 208 15-225 40-296 (389)
12 TIGR02917 PEP_TPR_lipo putativ 99.3 1.9E-09 4.1E-14 96.0 24.2 171 49-224 613-817 (899)
13 TIGR02917 PEP_TPR_lipo putativ 99.3 6.9E-10 1.5E-14 98.7 21.2 211 11-225 636-885 (899)
14 KOG4422 Uncharacterized conser 99.3 2.9E-10 6.2E-15 89.9 15.8 97 69-165 204-319 (625)
15 PF12854 PPR_1: PPR repeat 99.2 1.1E-11 2.4E-16 64.1 3.9 34 117-150 1-34 (34)
16 PF12854 PPR_1: PPR repeat 99.2 2.9E-11 6.2E-16 62.5 3.7 34 170-203 1-34 (34)
17 TIGR02521 type_IV_pilW type IV 99.0 5.1E-07 1.1E-11 67.5 22.7 154 47-221 41-213 (234)
18 PRK15174 Vi polysaccharide exp 99.0 3.5E-07 7.7E-12 79.4 22.1 211 11-225 77-332 (656)
19 KOG4318 Bicoid mRNA stability 99.0 7.9E-09 1.7E-13 88.2 11.3 161 58-220 11-248 (1088)
20 PRK15174 Vi polysaccharide exp 98.9 4.5E-07 9.8E-12 78.8 21.5 77 107-204 269-346 (656)
21 PF13429 TPR_15: Tetratricopep 98.9 1.5E-08 3.3E-13 79.0 11.2 206 15-225 13-262 (280)
22 KOG4318 Bicoid mRNA stability 98.9 6.3E-08 1.4E-12 82.9 13.5 172 7-190 22-285 (1088)
23 TIGR02521 type_IV_pilW type IV 98.9 8.9E-07 1.9E-11 66.2 18.4 172 12-204 33-231 (234)
24 PRK10747 putative protoheme IX 98.9 2.1E-06 4.5E-11 70.3 21.8 205 17-225 125-375 (398)
25 TIGR00756 PPR pentatricopeptid 98.8 5.4E-09 1.2E-13 54.3 4.1 35 177-211 1-35 (35)
26 TIGR00756 PPR pentatricopeptid 98.8 6.6E-09 1.4E-13 54.0 4.3 34 124-157 1-34 (35)
27 PF13812 PPR_3: Pentatricopept 98.8 7.7E-09 1.7E-13 53.5 4.2 34 123-156 1-34 (34)
28 PF13812 PPR_3: Pentatricopept 98.8 9.7E-09 2.1E-13 53.1 4.1 34 176-209 1-34 (34)
29 TIGR00990 3a0801s09 mitochondr 98.8 3E-06 6.6E-11 73.3 20.9 190 13-205 334-571 (615)
30 TIGR00540 hemY_coli hemY prote 98.7 6.8E-06 1.5E-10 67.6 21.3 210 15-225 123-384 (409)
31 PRK09782 bacteriophage N4 rece 98.7 5.8E-06 1.3E-10 74.5 21.6 186 12-204 479-705 (987)
32 PF13429 TPR_15: Tetratricopep 98.7 2.3E-07 5E-12 72.3 11.1 136 49-204 122-276 (280)
33 COG2956 Predicted N-acetylgluc 98.7 6.8E-06 1.5E-10 63.4 17.9 118 40-159 38-177 (389)
34 PF06239 ECSIT: Evolutionarily 98.7 6.1E-07 1.3E-11 65.5 11.5 104 120-225 44-152 (228)
35 COG3071 HemY Uncharacterized e 98.7 1.6E-05 3.5E-10 62.8 20.0 173 49-225 165-375 (400)
36 PF01535 PPR: PPR repeat; Int 98.6 7.6E-08 1.6E-12 48.5 3.4 31 124-154 1-31 (31)
37 PRK10747 putative protoheme IX 98.6 5.7E-06 1.2E-10 67.8 16.1 112 71-204 262-389 (398)
38 TIGR00990 3a0801s09 mitochondr 98.6 1.9E-05 4.1E-10 68.4 19.8 152 51-205 308-496 (615)
39 PF01535 PPR: PPR repeat; Int 98.6 1E-07 2.2E-12 48.0 3.5 31 177-207 1-31 (31)
40 PF08579 RPM2: Mitochondrial r 98.5 3.3E-06 7.2E-11 55.2 10.1 90 39-136 27-117 (120)
41 PRK11447 cellulose synthase su 98.5 3.3E-05 7.2E-10 71.6 19.4 86 100-205 615-700 (1157)
42 PF08579 RPM2: Mitochondrial r 98.4 7.6E-06 1.6E-10 53.5 10.7 79 127-223 29-116 (120)
43 PRK12370 invasion protein regu 98.4 4.6E-05 9.9E-10 65.2 18.7 128 22-151 316-469 (553)
44 PRK12370 invasion protein regu 98.4 5.5E-05 1.2E-09 64.7 19.2 132 51-204 318-469 (553)
45 PRK09782 bacteriophage N4 rece 98.4 5E-05 1.1E-09 68.6 19.1 97 51-151 590-705 (987)
46 KOG2003 TPR repeat-containing 98.4 2.7E-05 5.8E-10 62.9 15.5 52 172-224 655-707 (840)
47 KOG4626 O-linked N-acetylgluco 98.4 1.4E-05 3E-10 66.8 13.8 163 49-219 298-498 (966)
48 PRK11447 cellulose synthase su 98.4 7.9E-05 1.7E-09 69.1 20.2 182 16-224 467-684 (1157)
49 TIGR03302 OM_YfiO outer membra 98.4 0.00012 2.6E-09 55.4 18.2 171 16-205 13-232 (235)
50 PRK10049 pgaA outer membrane p 98.4 5.7E-05 1.2E-09 67.1 18.3 173 19-214 246-463 (765)
51 PRK14574 hmsH outer membrane p 98.4 6.1E-05 1.3E-09 66.8 18.1 77 129-205 298-396 (822)
52 PRK14574 hmsH outer membrane p 98.3 0.00015 3.3E-09 64.4 20.0 161 39-224 36-216 (822)
53 PF06239 ECSIT: Evolutionarily 98.3 1.2E-05 2.7E-10 58.8 10.2 112 38-151 47-167 (228)
54 COG2956 Predicted N-acetylgluc 98.3 0.00018 3.9E-09 55.8 16.7 137 15-152 74-278 (389)
55 KOG1840 Kinesin light chain [C 98.3 0.00021 4.6E-09 59.7 18.2 210 11-220 200-500 (508)
56 PF10037 MRP-S27: Mitochondria 98.3 3.8E-05 8.2E-10 62.7 13.2 130 59-222 50-184 (429)
57 PRK10049 pgaA outer membrane p 98.2 0.00058 1.2E-08 60.8 20.8 143 47-211 247-426 (765)
58 TIGR00540 hemY_coli hemY prote 98.2 0.00018 4E-09 59.2 16.4 32 172-203 366-397 (409)
59 PF04733 Coatomer_E: Coatomer 98.2 4.4E-05 9.5E-10 59.7 12.0 131 49-205 114-265 (290)
60 PRK11189 lipoprotein NlpI; Pro 98.2 0.002 4.4E-08 50.7 22.4 164 49-217 76-276 (296)
61 KOG1126 DNA-binding cell divis 98.1 0.00017 3.7E-09 60.5 14.2 146 69-221 418-601 (638)
62 KOG1155 Anaphase-promoting com 98.1 0.00059 1.3E-08 55.4 16.6 204 15-222 232-477 (559)
63 PF12569 NARP1: NMDA receptor- 98.1 0.00086 1.9E-08 56.5 18.5 186 18-207 12-293 (517)
64 KOG1128 Uncharacterized conser 98.1 9.3E-05 2E-09 62.8 12.6 189 7-220 394-632 (777)
65 COG3071 HemY Uncharacterized e 98.1 0.0023 5E-08 51.0 19.1 163 48-212 95-299 (400)
66 PF10037 MRP-S27: Mitochondria 98.0 8.5E-05 1.9E-09 60.7 11.3 110 40-165 68-180 (429)
67 KOG4626 O-linked N-acetylgluco 98.0 0.00081 1.8E-08 56.7 16.9 109 99-211 297-421 (966)
68 KOG2002 TPR-containing nuclear 98.0 0.00018 3.9E-09 62.9 12.2 105 100-224 624-729 (1018)
69 PRK15359 type III secretion sy 97.9 0.00083 1.8E-08 46.9 13.5 95 99-215 35-129 (144)
70 KOG3941 Intermediate in Toll s 97.9 0.00031 6.7E-09 53.6 11.2 104 120-225 64-172 (406)
71 PF04733 Coatomer_E: Coatomer 97.9 9.3E-05 2E-09 57.9 8.6 185 15-221 40-245 (290)
72 PF12921 ATP13: Mitochondrial 97.9 0.00016 3.4E-09 49.2 8.7 97 122-221 1-98 (126)
73 KOG3081 Vesicle coat complex C 97.9 0.0021 4.5E-08 48.8 15.0 127 58-206 94-237 (299)
74 KOG1129 TPR repeat-containing 97.9 0.00076 1.6E-08 52.6 13.0 104 49-155 235-356 (478)
75 COG3063 PilF Tfp pilus assembl 97.9 0.0057 1.2E-07 45.5 18.4 112 41-153 39-169 (250)
76 KOG1129 TPR repeat-containing 97.8 0.0045 9.7E-08 48.5 16.8 187 15-204 228-457 (478)
77 PRK10370 formate-dependent nit 97.8 0.0051 1.1E-07 45.4 16.2 131 50-220 52-186 (198)
78 KOG3081 Vesicle coat complex C 97.7 0.0049 1.1E-07 46.8 15.2 120 19-154 117-238 (299)
79 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0024 5.3E-08 52.0 14.6 83 101-203 213-295 (395)
80 PF09976 TPR_21: Tetratricopep 97.7 0.0074 1.6E-07 42.1 15.1 126 41-202 15-144 (145)
81 TIGR02552 LcrH_SycD type III s 97.7 0.0018 3.8E-08 44.4 11.6 99 99-219 28-126 (135)
82 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0017 3.8E-08 52.8 12.8 101 44-150 175-295 (395)
83 KOG1915 Cell cycle control pro 97.6 0.0069 1.5E-07 49.7 15.6 133 49-204 85-235 (677)
84 PF12921 ATP13: Mitochondrial 97.6 0.0016 3.4E-08 44.3 10.2 91 71-165 1-95 (126)
85 PRK11189 lipoprotein NlpI; Pro 97.6 0.023 4.9E-07 44.8 17.8 102 50-153 39-162 (296)
86 PF12895 Apc3: Anaphase-promot 97.6 0.00024 5.2E-09 44.6 5.5 81 101-201 2-83 (84)
87 cd05804 StaR_like StaR_like; a 97.6 0.029 6.2E-07 45.2 18.9 139 47-204 53-214 (355)
88 KOG0547 Translocase of outer m 97.6 0.0045 9.7E-08 50.9 13.5 182 20-203 343-564 (606)
89 PF03704 BTAD: Bacterial trans 97.5 0.0075 1.6E-07 42.1 13.3 113 48-161 17-139 (146)
90 KOG1155 Anaphase-promoting com 97.5 0.017 3.6E-07 47.3 16.2 134 49-204 342-494 (559)
91 KOG2076 RNA polymerase III tra 97.5 0.062 1.3E-06 47.4 20.1 165 48-214 150-354 (895)
92 COG4783 Putative Zn-dependent 97.5 0.03 6.6E-07 46.0 17.3 143 41-204 310-453 (484)
93 KOG1173 Anaphase-promoting com 97.5 0.011 2.5E-07 49.3 14.8 179 20-223 322-534 (611)
94 KOG1126 DNA-binding cell divis 97.4 0.0061 1.3E-07 51.6 13.2 172 8-205 419-620 (638)
95 PRK15179 Vi polysaccharide bio 97.4 0.027 5.8E-07 49.6 17.7 113 71-204 85-216 (694)
96 KOG2076 RNA polymerase III tra 97.4 0.042 9.2E-07 48.4 18.3 49 175-223 413-461 (895)
97 KOG4340 Uncharacterized conser 97.4 0.0031 6.7E-08 48.8 10.3 136 15-155 49-210 (459)
98 TIGR02552 LcrH_SycD type III s 97.4 0.016 3.5E-07 39.6 13.3 89 47-153 27-115 (135)
99 cd00189 TPR Tetratricopeptide 97.4 0.0074 1.6E-07 37.4 10.9 86 100-205 12-97 (100)
100 PF03704 BTAD: Bacterial trans 97.4 0.023 4.9E-07 39.6 14.8 74 124-216 63-141 (146)
101 PLN03088 SGT1, suppressor of 97.4 0.0086 1.9E-07 48.5 13.2 101 99-221 13-113 (356)
102 KOG4340 Uncharacterized conser 97.3 0.007 1.5E-07 46.9 11.6 103 99-201 189-335 (459)
103 KOG0547 Translocase of outer m 97.3 0.0025 5.4E-08 52.3 9.3 138 11-151 395-565 (606)
104 PF05843 Suf: Suppressor of fo 97.3 0.0067 1.4E-07 47.4 11.5 144 40-219 3-148 (280)
105 KOG2003 TPR repeat-containing 97.3 0.031 6.8E-07 45.8 15.2 119 51-191 572-709 (840)
106 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.017 3.6E-07 38.3 11.9 92 99-206 13-106 (119)
107 KOG1915 Cell cycle control pro 97.2 0.065 1.4E-06 44.3 16.6 48 49-98 153-200 (677)
108 TIGR03302 OM_YfiO outer membra 97.2 0.048 1.1E-06 41.2 15.6 153 71-225 32-217 (235)
109 KOG3060 Uncharacterized conser 97.2 0.052 1.1E-06 41.2 17.4 136 49-204 24-182 (289)
110 COG5010 TadD Flp pilus assembl 97.2 0.031 6.7E-07 42.3 13.9 119 46-202 109-228 (257)
111 KOG2002 TPR-containing nuclear 97.2 0.032 6.9E-07 49.6 15.7 152 50-208 625-801 (1018)
112 COG3063 PilF Tfp pilus assembl 97.2 0.056 1.2E-06 40.4 16.7 179 15-217 40-246 (250)
113 PRK15359 type III secretion sy 97.2 0.028 6E-07 39.2 12.5 89 47-153 34-122 (144)
114 COG4783 Putative Zn-dependent 97.2 0.073 1.6E-06 43.9 16.3 104 99-225 317-422 (484)
115 PF14559 TPR_19: Tetratricopep 97.2 0.0028 6E-08 37.8 6.6 64 134-218 2-65 (68)
116 KOG1070 rRNA processing protei 97.1 0.011 2.4E-07 54.3 12.2 130 49-196 1542-1691(1710)
117 PRK15179 Vi polysaccharide bio 97.1 0.061 1.3E-06 47.4 16.6 113 49-165 98-229 (694)
118 PF14938 SNAP: Soluble NSF att 97.1 0.017 3.7E-07 45.2 12.1 137 72-222 94-246 (282)
119 PF09205 DUF1955: Domain of un 97.1 0.043 9.3E-07 37.4 15.1 135 47-208 12-152 (161)
120 KOG1840 Kinesin light chain [C 97.1 0.057 1.2E-06 45.6 15.5 147 49-204 211-395 (508)
121 KOG1070 rRNA processing protei 97.0 0.14 3E-06 47.6 18.0 164 47-211 1468-1669(1710)
122 PF09976 TPR_21: Tetratricopep 97.0 0.039 8.4E-07 38.5 11.9 119 88-225 8-132 (145)
123 KOG3941 Intermediate in Toll s 97.0 0.006 1.3E-07 46.8 7.9 101 49-151 84-187 (406)
124 KOG2047 mRNA splicing factor [ 96.9 0.19 4.1E-06 43.2 17.0 175 26-222 91-292 (835)
125 KOG3785 Uncharacterized conser 96.9 0.021 4.6E-07 45.3 10.7 109 37-152 285-422 (557)
126 PF14559 TPR_19: Tetratricopep 96.9 0.0059 1.3E-07 36.4 6.2 53 100-153 3-55 (68)
127 PRK14720 transcript cleavage f 96.9 0.13 2.9E-06 46.3 16.6 205 12-223 33-269 (906)
128 cd00189 TPR Tetratricopeptide 96.8 0.047 1E-06 33.6 10.8 88 47-152 10-97 (100)
129 KOG3616 Selective LIM binding 96.8 0.011 2.5E-07 51.1 8.8 148 47-203 742-909 (1636)
130 PF12895 Apc3: Anaphase-promot 96.7 0.0047 1E-07 38.7 5.2 80 50-148 2-83 (84)
131 KOG0495 HAT repeat protein [RN 96.7 0.34 7.4E-06 41.9 19.8 124 99-225 730-865 (913)
132 KOG1914 mRNA cleavage and poly 96.7 0.16 3.4E-06 42.7 14.6 130 40-204 368-500 (656)
133 KOG2376 Signal recognition par 96.7 0.25 5.4E-06 41.9 15.8 98 99-202 90-201 (652)
134 PLN03088 SGT1, suppressor of 96.7 0.17 3.7E-06 41.0 14.9 89 46-153 11-100 (356)
135 PRK10153 DNA-binding transcrip 96.6 0.15 3.4E-06 43.4 14.9 119 67-205 332-482 (517)
136 PRK02603 photosystem I assembl 96.6 0.12 2.6E-06 37.1 12.5 53 100-152 47-101 (172)
137 PF13414 TPR_11: TPR repeat; P 96.6 0.025 5.5E-07 33.7 7.7 64 122-204 2-66 (69)
138 PRK15363 pathogenicity island 96.6 0.14 3.1E-06 36.0 13.0 92 99-211 46-139 (157)
139 PF13170 DUF4003: Protein of u 96.6 0.17 3.8E-06 39.8 13.7 132 53-215 78-221 (297)
140 CHL00033 ycf3 photosystem I as 96.6 0.14 3E-06 36.6 12.4 84 100-202 47-139 (168)
141 KOG2053 Mitochondrial inherita 96.5 0.19 4.1E-06 44.5 14.8 119 38-194 10-128 (932)
142 PF13432 TPR_16: Tetratricopep 96.5 0.022 4.8E-07 33.5 6.7 57 130-205 4-60 (65)
143 COG5010 TadD Flp pilus assembl 96.5 0.25 5.5E-06 37.5 15.4 89 99-207 111-199 (257)
144 PRK10370 formate-dependent nit 96.5 0.22 4.8E-06 36.8 16.6 124 80-224 24-157 (198)
145 KOG0495 HAT repeat protein [RN 96.5 0.47 1E-05 41.0 16.2 111 99-213 561-686 (913)
146 PF05843 Suf: Suppressor of fo 96.5 0.17 3.6E-06 39.6 13.1 132 14-165 5-147 (280)
147 PF04840 Vps16_C: Vps16, C-ter 96.4 0.15 3.3E-06 40.6 12.9 51 16-66 6-68 (319)
148 PF13424 TPR_12: Tetratricopep 96.4 0.027 5.9E-07 34.5 7.0 66 124-204 6-74 (78)
149 KOG2047 mRNA splicing factor [ 96.4 0.56 1.2E-05 40.5 16.6 154 7-161 384-587 (835)
150 KOG2376 Signal recognition par 96.4 0.54 1.2E-05 40.0 17.5 119 103-223 356-504 (652)
151 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.38 8.3E-06 39.8 14.5 136 44-221 403-545 (660)
152 TIGR02795 tol_pal_ybgF tol-pal 96.3 0.17 3.6E-06 33.4 12.8 96 42-153 7-106 (119)
153 PF13371 TPR_9: Tetratricopept 96.3 0.056 1.2E-06 32.5 7.7 65 131-216 3-67 (73)
154 KOG3616 Selective LIM binding 96.2 0.18 3.9E-06 44.1 12.8 75 99-202 743-817 (1636)
155 cd05804 StaR_like StaR_like; a 96.2 0.47 1E-05 38.1 17.7 185 19-205 52-293 (355)
156 KOG3617 WD40 and TPR repeat-co 96.2 0.11 2.5E-06 45.8 11.6 85 49-148 740-851 (1416)
157 KOG1156 N-terminal acetyltrans 96.2 0.7 1.5E-05 39.8 17.7 78 19-98 194-280 (700)
158 PF13432 TPR_16: Tetratricopep 96.0 0.045 9.7E-07 32.2 6.3 53 99-152 8-60 (65)
159 PF12569 NARP1: NMDA receptor- 96.0 0.59 1.3E-05 39.9 14.9 101 49-151 206-333 (517)
160 KOG1156 N-terminal acetyltrans 96.0 0.89 1.9E-05 39.2 15.5 168 49-221 53-262 (700)
161 KOG1125 TPR repeat-containing 96.0 0.83 1.8E-05 38.7 15.1 82 104-204 410-492 (579)
162 KOG0985 Vesicle coat protein c 96.0 1 2.3E-05 41.1 16.3 199 10-222 1104-1324(1666)
163 PF13424 TPR_12: Tetratricopep 96.0 0.058 1.3E-06 33.0 6.8 68 73-151 6-74 (78)
164 PF04053 Coatomer_WDAD: Coatom 95.9 0.05 1.1E-06 45.3 7.8 122 11-148 296-427 (443)
165 PF13762 MNE1: Mitochondrial s 95.8 0.34 7.4E-06 33.7 10.6 97 114-223 28-127 (145)
166 PF12688 TPR_5: Tetratrico pep 95.8 0.34 7.4E-06 32.6 12.7 104 100-223 13-118 (120)
167 PRK10866 outer membrane biogen 95.6 0.71 1.5E-05 35.3 17.9 60 38-98 33-95 (243)
168 KOG3785 Uncharacterized conser 95.6 0.5 1.1E-05 37.9 11.9 135 15-150 290-455 (557)
169 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.26 5.6E-06 40.7 10.5 51 99-151 86-140 (453)
170 PRK14720 transcript cleavage f 95.4 0.75 1.6E-05 41.7 13.8 160 41-205 34-198 (906)
171 KOG0553 TPR repeat-containing 95.4 0.46 9.9E-06 37.0 10.8 99 99-220 92-191 (304)
172 KOG2053 Mitochondrial inherita 95.4 2 4.2E-05 38.6 17.8 68 20-89 53-127 (932)
173 PLN02789 farnesyltranstransfer 95.3 1.2 2.6E-05 35.6 18.5 48 175-223 216-267 (320)
174 PF04840 Vps16_C: Vps16, C-ter 95.2 0.54 1.2E-05 37.5 11.3 98 47-198 187-284 (319)
175 PRK10803 tol-pal system protei 95.0 0.76 1.7E-05 35.6 11.3 88 100-205 155-246 (263)
176 COG3629 DnrI DNA-binding trans 95.0 1 2.2E-05 35.1 11.8 95 69-164 134-233 (280)
177 PF12688 TPR_5: Tetratrico pep 94.9 0.71 1.5E-05 31.1 10.1 84 49-150 13-102 (120)
178 KOG4162 Predicted calmodulin-b 94.9 2.5 5.5E-05 37.3 17.2 31 174-204 752-782 (799)
179 PRK02603 photosystem I assembl 94.8 1 2.2E-05 32.3 12.3 67 122-205 34-101 (172)
180 KOG1173 Anaphase-promoting com 94.7 2.4 5.1E-05 36.1 15.5 106 99-219 391-497 (611)
181 PRK10866 outer membrane biogen 94.7 1.4 3.1E-05 33.6 14.8 170 15-204 37-240 (243)
182 CHL00033 ycf3 photosystem I as 94.7 0.82 1.8E-05 32.5 10.2 98 107-221 18-116 (168)
183 PF13414 TPR_11: TPR repeat; P 94.6 0.33 7.2E-06 28.7 6.9 53 99-152 14-67 (69)
184 PRK04841 transcriptional regul 94.4 3.9 8.5E-05 37.5 16.6 142 49-204 464-640 (903)
185 PF13371 TPR_9: Tetratricopept 94.3 0.28 6.1E-06 29.3 6.3 54 99-153 6-59 (73)
186 KOG1914 mRNA cleavage and poly 94.3 3 6.4E-05 35.5 18.9 114 105-219 348-480 (656)
187 PF04053 Coatomer_WDAD: Coatom 94.3 1.2 2.6E-05 37.3 11.6 142 46-201 270-427 (443)
188 COG3629 DnrI DNA-binding trans 94.3 1.1 2.5E-05 34.8 10.6 80 123-221 153-237 (280)
189 KOG1127 TPR repeat-containing 94.2 2 4.4E-05 39.1 13.0 98 52-152 507-625 (1238)
190 KOG1128 Uncharacterized conser 94.2 1.7 3.7E-05 38.1 12.3 140 68-209 394-586 (777)
191 PF13929 mRNA_stabil: mRNA sta 94.0 2.3 4.9E-05 33.2 12.2 99 108-224 186-291 (292)
192 PF13525 YfiO: Outer membrane 94.0 1.8 3.9E-05 32.0 15.5 58 41-98 9-68 (203)
193 smart00299 CLH Clathrin heavy 93.8 1.4 3.1E-05 30.2 15.2 128 40-224 9-138 (140)
194 PRK10803 tol-pal system protei 93.8 1.5 3.3E-05 33.9 10.6 79 75-153 146-247 (263)
195 PF14938 SNAP: Soluble NSF att 93.7 2.6 5.7E-05 32.9 12.8 137 15-152 40-225 (282)
196 KOG1174 Anaphase-promoting com 93.7 3.4 7.3E-05 34.1 16.8 117 99-220 345-480 (564)
197 PLN02789 farnesyltranstransfer 93.7 3 6.5E-05 33.4 18.2 50 105-155 125-174 (320)
198 KOG1125 TPR repeat-containing 93.7 1.7 3.6E-05 37.0 11.1 110 56-203 413-525 (579)
199 KOG0985 Vesicle coat protein c 93.7 3 6.4E-05 38.4 13.0 154 43-201 515-749 (1666)
200 KOG4570 Uncharacterized conser 93.4 0.51 1.1E-05 37.2 7.2 52 102-153 114-165 (418)
201 PRK15331 chaperone protein Sic 93.3 2 4.3E-05 30.6 9.6 120 15-152 15-134 (165)
202 COG4235 Cytochrome c biogenesi 93.2 3.3 7.1E-05 32.4 11.9 100 71-205 155-256 (287)
203 PF09205 DUF1955: Domain of un 93.0 2.1 4.5E-05 29.5 9.4 80 75-155 72-152 (161)
204 PF13176 TPR_7: Tetratricopept 92.9 0.35 7.5E-06 24.7 4.1 26 125-150 1-26 (36)
205 KOG1174 Anaphase-promoting com 92.9 4.7 0.0001 33.3 14.9 133 49-204 346-499 (564)
206 PF13176 TPR_7: Tetratricopept 92.8 0.32 6.9E-06 24.8 3.9 26 178-203 1-26 (36)
207 KOG0553 TPR repeat-containing 92.7 3 6.5E-05 32.7 10.5 100 47-167 91-191 (304)
208 PRK15363 pathogenicity island 92.7 2.6 5.6E-05 29.8 12.1 90 45-153 43-133 (157)
209 KOG1585 Protein required for f 92.6 2.3 5.1E-05 32.4 9.5 97 51-149 72-176 (308)
210 KOG2796 Uncharacterized conser 92.4 4.2 9.2E-05 31.5 11.6 103 49-152 189-315 (366)
211 PLN03098 LPA1 LOW PSII ACCUMUL 92.2 1.4 3E-05 36.6 8.6 84 69-156 72-178 (453)
212 PF02284 COX5A: Cytochrome c o 92.1 2.1 4.5E-05 27.8 7.6 50 103-152 25-74 (108)
213 KOG1920 IkappaB kinase complex 92.1 2.1 4.5E-05 39.7 10.1 113 24-150 894-1026(1265)
214 PF07035 Mic1: Colon cancer-as 91.8 3.6 7.9E-05 29.5 12.8 122 57-205 14-149 (167)
215 cd00923 Cyt_c_Oxidase_Va Cytoc 91.7 2.4 5.2E-05 27.3 8.4 61 103-165 22-83 (103)
216 PF13170 DUF4003: Protein of u 91.6 5.7 0.00012 31.4 12.1 99 51-163 117-222 (297)
217 KOG1538 Uncharacterized conser 91.6 7.8 0.00017 34.0 12.5 27 180-206 821-847 (1081)
218 KOG3617 WD40 and TPR repeat-co 91.5 5.7 0.00012 35.9 11.8 33 174-206 1328-1360(1416)
219 PF10300 DUF3808: Protein of u 91.4 5.9 0.00013 33.5 11.8 207 13-222 191-464 (468)
220 COG1729 Uncharacterized protei 91.3 3.6 7.8E-05 31.7 9.5 97 40-152 144-244 (262)
221 PRK10153 DNA-binding transcrip 91.3 5.8 0.00013 34.1 11.8 53 99-153 431-483 (517)
222 PRK13342 recombination factor 91.3 7.6 0.00016 32.3 13.6 116 104-221 153-275 (413)
223 COG4649 Uncharacterized protei 91.3 4.3 9.4E-05 29.4 13.4 116 41-156 62-200 (221)
224 KOG4570 Uncharacterized conser 90.8 4 8.6E-05 32.4 9.3 132 67-205 15-164 (418)
225 KOG3060 Uncharacterized conser 90.8 6.2 0.00013 30.4 16.9 106 44-152 59-183 (289)
226 PF07079 DUF1347: Protein of u 90.8 8.8 0.00019 32.1 14.1 151 49-224 18-180 (549)
227 PRK04841 transcriptional regul 90.3 15 0.00032 33.9 14.9 92 100-204 464-559 (903)
228 PF13428 TPR_14: Tetratricopep 90.2 0.84 1.8E-05 24.4 4.0 29 177-205 2-30 (44)
229 PF13374 TPR_10: Tetratricopep 90.2 1.1 2.3E-05 23.2 4.4 30 123-152 2-31 (42)
230 KOG0276 Vesicle coat complex C 90.1 8.3 0.00018 33.5 11.3 123 11-149 615-747 (794)
231 PF13374 TPR_10: Tetratricopep 90.1 0.94 2E-05 23.4 4.2 29 176-204 2-30 (42)
232 PF13525 YfiO: Outer membrane 89.9 6.3 0.00014 29.1 12.3 163 14-196 9-198 (203)
233 PF07035 Mic1: Colon cancer-as 89.8 5.8 0.00013 28.4 10.5 91 108-202 14-115 (167)
234 PF10602 RPN7: 26S proteasome 89.3 5 0.00011 29.1 8.5 93 47-150 46-140 (177)
235 KOG1127 TPR repeat-containing 89.3 18 0.00039 33.5 13.3 137 71-210 474-628 (1238)
236 PF09613 HrpB1_HrpK: Bacterial 88.9 6.6 0.00014 27.9 10.5 53 47-116 20-72 (160)
237 COG3898 Uncharacterized membra 88.8 12 0.00026 30.8 17.6 166 38-206 82-293 (531)
238 PF02284 COX5A: Cytochrome c o 88.7 3.5 7.5E-05 26.9 6.4 49 170-220 39-88 (108)
239 PF13428 TPR_14: Tetratricopep 88.4 1.5 3.1E-05 23.4 4.1 29 125-153 3-31 (44)
240 PF13929 mRNA_stabil: mRNA sta 88.3 11 0.00023 29.6 12.7 143 66-225 106-252 (292)
241 PF11848 DUF3368: Domain of un 88.2 2.3 5.1E-05 23.4 4.9 38 183-220 9-46 (48)
242 KOG2796 Uncharacterized conser 88.1 11 0.00023 29.4 11.5 115 101-217 190-325 (366)
243 PRK10564 maltose regulon perip 87.9 1.6 3.4E-05 34.3 5.4 44 118-161 251-295 (303)
244 KOG1538 Uncharacterized conser 87.8 4.2 9.1E-05 35.5 8.2 106 48-155 714-849 (1081)
245 PF13512 TPR_18: Tetratricopep 87.8 7.2 0.00016 27.1 11.1 60 38-97 11-72 (142)
246 PF00637 Clathrin: Region in C 87.8 0.062 1.3E-06 37.2 -2.1 87 49-145 19-105 (143)
247 PF13281 DUF4071: Domain of un 87.4 15 0.00032 30.2 16.7 147 57-205 123-334 (374)
248 PRK15331 chaperone protein Sic 87.4 8.6 0.00019 27.5 12.4 86 99-204 48-133 (165)
249 PF11848 DUF3368: Domain of un 87.0 3.3 7.1E-05 22.8 5.0 36 130-165 9-44 (48)
250 PF13762 MNE1: Mitochondrial s 86.5 9 0.00019 26.8 12.1 98 63-171 28-128 (145)
251 PF11663 Toxin_YhaV: Toxin wit 86.4 0.88 1.9E-05 31.1 2.9 32 49-82 107-138 (140)
252 TIGR03504 FimV_Cterm FimV C-te 86.3 1.8 4E-05 23.3 3.6 37 181-217 4-40 (44)
253 TIGR02561 HrpB1_HrpK type III 86.2 9.4 0.0002 26.8 10.2 18 48-65 21-38 (153)
254 PF00515 TPR_1: Tetratricopept 86.0 2.7 5.9E-05 20.6 4.1 28 177-204 2-29 (34)
255 COG3947 Response regulator con 85.5 16 0.00035 28.8 14.1 141 53-215 149-357 (361)
256 cd00923 Cyt_c_Oxidase_Va Cytoc 85.5 7.6 0.00017 25.0 7.4 48 171-220 37-85 (103)
257 KOG2114 Vacuolar assembly/sort 85.4 3.9 8.4E-05 36.6 6.9 93 20-113 378-475 (933)
258 KOG2297 Predicted translation 84.6 16 0.00035 29.0 9.3 156 5-195 160-340 (412)
259 KOG2280 Vacuolar assembly/sort 84.5 30 0.00064 31.0 12.8 58 8-65 505-574 (829)
260 PF13281 DUF4071: Domain of un 84.4 21 0.00046 29.2 10.6 79 128-221 146-227 (374)
261 COG3898 Uncharacterized membra 84.0 23 0.00049 29.3 16.9 76 22-98 132-214 (531)
262 PF10602 RPN7: 26S proteasome 84.0 14 0.0003 26.8 10.8 53 99-151 47-101 (177)
263 PF10300 DUF3808: Protein of u 83.8 26 0.00056 29.8 12.6 39 179-219 308-347 (468)
264 KOG0548 Molecular co-chaperone 83.6 27 0.00058 29.8 12.7 50 130-198 365-414 (539)
265 KOG1920 IkappaB kinase complex 83.1 7.6 0.00016 36.3 7.9 29 9-37 789-819 (1265)
266 PF13512 TPR_18: Tetratricopep 83.0 13 0.00029 25.8 11.2 55 99-153 21-77 (142)
267 PF04184 ST7: ST7 protein; In 82.9 25 0.00054 30.0 10.2 67 99-165 270-338 (539)
268 PF00515 TPR_1: Tetratricopept 82.9 4.1 9E-05 19.9 4.4 29 124-152 2-30 (34)
269 KOG2280 Vacuolar assembly/sort 82.8 1.3 2.9E-05 38.9 3.1 95 7-113 712-808 (829)
270 PF10366 Vps39_1: Vacuolar sor 82.5 11 0.00025 24.7 7.2 65 76-151 3-67 (108)
271 KOG0276 Vesicle coat complex C 82.5 33 0.00072 30.0 11.8 135 49-201 598-746 (794)
272 KOG0624 dsRNA-activated protei 81.6 27 0.00058 28.4 17.5 131 18-154 80-220 (504)
273 PF11663 Toxin_YhaV: Toxin wit 81.0 1.6 3.6E-05 29.8 2.5 33 99-133 106-138 (140)
274 COG4649 Uncharacterized protei 80.8 19 0.00041 26.2 11.4 111 99-209 69-200 (221)
275 KOG2041 WD40 repeat protein [G 80.8 42 0.00091 30.1 11.1 22 125-146 798-819 (1189)
276 PF04184 ST7: ST7 protein; In 80.6 35 0.00076 29.1 15.5 156 42-218 173-338 (539)
277 PF11207 DUF2989: Protein of u 80.5 21 0.00045 26.5 9.5 80 100-196 119-198 (203)
278 PF13181 TPR_8: Tetratricopept 79.8 5.5 0.00012 19.4 4.1 28 177-204 2-29 (34)
279 PRK14958 DNA polymerase III su 79.4 40 0.00087 29.0 12.5 92 114-213 191-282 (509)
280 TIGR03504 FimV_Cterm FimV C-te 79.2 4.9 0.00011 21.7 3.6 26 129-154 5-30 (44)
281 COG2976 Uncharacterized protei 78.7 24 0.00052 26.1 12.4 110 41-153 57-189 (207)
282 KOG0543 FKBP-type peptidyl-pro 78.6 36 0.00078 28.0 11.9 121 47-204 218-354 (397)
283 PF07719 TPR_2: Tetratricopept 78.5 6.1 0.00013 19.1 4.1 28 177-204 2-29 (34)
284 PRK14956 DNA polymerase III su 78.5 42 0.0009 28.7 11.7 103 105-214 183-286 (484)
285 PF07721 TPR_4: Tetratricopept 78.4 4.8 0.0001 18.6 3.0 22 126-147 4-25 (26)
286 COG5210 GTPase-activating prot 77.8 44 0.00095 28.6 11.1 105 107-211 361-481 (496)
287 COG4105 ComL DNA uptake lipopr 77.7 30 0.00065 26.7 17.3 158 32-205 29-233 (254)
288 COG4455 ImpE Protein of avirul 77.4 29 0.00063 26.3 8.4 77 125-220 3-81 (273)
289 PF09454 Vps23_core: Vps23 cor 77.2 5.4 0.00012 23.6 3.6 51 173-224 5-55 (65)
290 KOG0624 dsRNA-activated protei 76.8 39 0.00085 27.5 14.1 134 19-155 115-301 (504)
291 PRK10564 maltose regulon perip 76.6 6.7 0.00015 30.9 4.9 45 173-217 253-298 (303)
292 PF13174 TPR_6: Tetratricopept 76.5 6.6 0.00014 18.8 3.5 25 181-205 5-29 (33)
293 PF12926 MOZART2: Mitotic-spin 76.2 17 0.00036 22.9 6.2 52 122-175 9-60 (88)
294 COG1729 Uncharacterized protei 76.1 34 0.00075 26.5 11.0 90 99-205 152-244 (262)
295 PF08631 SPO22: Meiosis protei 75.7 36 0.00078 26.5 15.9 48 104-152 103-150 (278)
296 COG2178 Predicted RNA-binding 75.7 30 0.00064 25.5 8.6 104 75-204 32-149 (204)
297 KOG0548 Molecular co-chaperone 75.3 52 0.0011 28.2 13.2 53 99-152 369-421 (539)
298 PF13431 TPR_17: Tetratricopep 74.5 3.5 7.5E-05 20.7 2.0 23 174-196 11-33 (34)
299 PF13877 RPAP3_C: Potential Mo 74.4 19 0.00042 22.8 6.1 42 71-112 45-89 (94)
300 PF07079 DUF1347: Protein of u 74.2 53 0.0011 27.8 11.5 128 21-165 17-174 (549)
301 PF00637 Clathrin: Region in C 73.6 1.2 2.7E-05 30.6 0.3 113 101-225 20-139 (143)
302 cd07153 Fur_like Ferric uptake 73.5 8.1 0.00017 25.5 4.3 44 182-225 6-49 (116)
303 COG2909 MalT ATP-dependent tra 73.4 75 0.0016 29.2 15.6 54 99-152 469-526 (894)
304 KOG4077 Cytochrome c oxidase, 73.1 23 0.0005 24.2 6.1 49 104-152 65-113 (149)
305 PF14689 SPOB_a: Sensor_kinase 73.0 6.4 0.00014 22.9 3.2 29 176-204 23-51 (62)
306 TIGR03184 DNA_S_dndE DNA sulfu 72.4 16 0.00034 24.0 5.2 86 140-225 5-98 (105)
307 PHA02875 ankyrin repeat protei 72.3 43 0.00094 27.6 9.2 157 40-212 35-231 (413)
308 PF11846 DUF3366: Domain of un 71.8 30 0.00065 25.2 7.3 32 173-204 141-172 (193)
309 PRK14958 DNA polymerase III su 71.7 66 0.0014 27.8 12.0 92 64-161 192-283 (509)
310 PF11768 DUF3312: Protein of u 71.1 11 0.00024 32.2 5.3 100 15-115 413-521 (545)
311 KOG0687 26S proteasome regulat 70.9 54 0.0012 26.5 12.4 15 189-203 194-208 (393)
312 KOG1585 Protein required for f 70.3 48 0.001 25.7 7.9 46 126-171 193-241 (308)
313 KOG4162 Predicted calmodulin-b 70.1 84 0.0018 28.4 16.0 160 60-221 311-523 (799)
314 PF01475 FUR: Ferric uptake re 70.0 6.1 0.00013 26.4 3.1 45 181-225 12-56 (120)
315 PF11846 DUF3366: Domain of un 69.8 21 0.00045 26.0 6.1 34 119-152 140-173 (193)
316 smart00028 TPR Tetratricopepti 69.6 9.2 0.0002 17.2 3.1 28 177-204 2-29 (34)
317 smart00299 CLH Clathrin heavy 69.0 33 0.00072 23.3 9.9 88 99-199 18-105 (140)
318 PF02259 FAT: FAT domain; Int 68.6 58 0.0013 25.9 14.3 173 17-204 5-212 (352)
319 TIGR02508 type_III_yscG type I 67.9 31 0.00068 22.5 9.0 71 78-154 27-99 (115)
320 KOG0550 Molecular chaperone (D 67.9 72 0.0016 26.7 10.9 21 185-205 330-350 (486)
321 PF09454 Vps23_core: Vps23 cor 67.5 14 0.00029 21.9 3.8 36 119-154 4-39 (65)
322 COG4235 Cytochrome c biogenesi 67.5 59 0.0013 25.6 12.9 91 48-153 167-257 (287)
323 COG4105 ComL DNA uptake lipopr 67.0 57 0.0012 25.2 13.9 135 17-152 41-233 (254)
324 PF07163 Pex26: Pex26 protein; 66.7 23 0.0005 27.8 5.7 101 15-115 88-203 (309)
325 PRK08691 DNA polymerase III su 66.2 1E+02 0.0022 27.8 12.3 99 105-211 181-280 (709)
326 KOG4555 TPR repeat-containing 66.0 42 0.0009 23.3 8.1 92 48-155 54-147 (175)
327 COG5107 RNA14 Pre-mRNA 3'-end 65.6 85 0.0018 26.7 9.5 79 123-201 397-491 (660)
328 PRK07764 DNA polymerase III su 65.5 1.1E+02 0.0025 28.2 11.6 100 104-210 181-281 (824)
329 COG5108 RPO41 Mitochondrial DN 65.3 51 0.0011 29.4 8.0 75 128-221 33-113 (1117)
330 TIGR02508 type_III_yscG type I 65.3 17 0.00036 23.7 4.1 53 47-105 49-101 (115)
331 PF14689 SPOB_a: Sensor_kinase 65.2 14 0.00029 21.6 3.5 47 104-152 6-52 (62)
332 PRK14956 DNA polymerase III su 65.0 84 0.0018 26.9 9.2 71 49-122 212-282 (484)
333 PRK08691 DNA polymerase III su 64.9 1.1E+02 0.0023 27.7 11.8 89 65-159 193-281 (709)
334 PF10475 DUF2450: Protein of u 64.5 69 0.0015 25.3 9.0 24 173-196 194-217 (291)
335 PF14840 DNA_pol3_delt_C: Proc 64.5 11 0.00023 25.7 3.3 34 44-77 4-37 (125)
336 COG0735 Fur Fe2+/Zn2+ uptake r 63.7 15 0.00032 25.6 4.1 46 180-225 24-69 (145)
337 PRK14951 DNA polymerase III su 63.4 1.1E+02 0.0024 27.2 11.0 99 105-211 186-285 (618)
338 PRK14963 DNA polymerase III su 62.8 1E+02 0.0022 26.6 12.3 99 103-210 176-275 (504)
339 COG4700 Uncharacterized protei 62.2 62 0.0014 24.0 13.1 85 67-153 84-190 (251)
340 PF12169 DNA_pol3_gamma3: DNA 61.9 17 0.00036 25.0 4.1 46 28-73 5-50 (143)
341 PHA02875 ankyrin repeat protei 61.9 90 0.0019 25.7 10.5 50 43-96 5-56 (413)
342 PF08542 Rep_fac_C: Replicatio 61.3 16 0.00035 22.7 3.6 49 36-85 3-51 (89)
343 KOG0991 Replication factor C, 60.5 26 0.00057 26.9 5.0 53 29-82 230-282 (333)
344 PRK14963 DNA polymerase III su 60.4 1.1E+02 0.0024 26.4 10.7 31 126-157 245-275 (504)
345 PRK14962 DNA polymerase III su 60.3 90 0.002 26.7 8.8 51 36-86 242-292 (472)
346 COG3118 Thioredoxin domain-con 60.3 85 0.0018 24.9 13.0 55 43-98 140-194 (304)
347 PF07163 Pex26: Pex26 protein; 60.2 84 0.0018 24.8 7.9 69 78-146 89-181 (309)
348 KOG2114 Vacuolar assembly/sort 60.0 1.3E+02 0.0028 27.6 9.7 21 127-147 435-455 (933)
349 PF12554 MOZART1: Mitotic-spin 59.1 29 0.00062 19.1 4.1 34 142-175 4-38 (48)
350 PRK11639 zinc uptake transcrip 59.0 15 0.00033 26.3 3.5 44 182-225 31-74 (169)
351 PF12926 MOZART2: Mitotic-spin 59.0 43 0.00093 21.1 5.6 41 58-98 29-69 (88)
352 KOG0543 FKBP-type peptidyl-pro 58.8 1E+02 0.0023 25.5 9.7 101 99-220 219-333 (397)
353 PF11207 DUF2989: Protein of u 58.1 75 0.0016 23.6 9.7 78 49-143 118-198 (203)
354 PF09868 DUF2095: Uncharacteri 57.5 46 0.001 22.2 5.1 42 182-224 67-108 (128)
355 PRK15180 Vi polysaccharide bio 57.3 1.3E+02 0.0027 26.0 9.0 93 43-154 295-388 (831)
356 PF02607 B12-binding_2: B12 bi 57.2 20 0.00043 21.7 3.4 47 41-87 5-51 (79)
357 PLN03025 replication factor C 57.1 98 0.0021 24.7 11.8 102 105-215 161-263 (319)
358 COG5159 RPN6 26S proteasome re 57.0 99 0.0021 24.6 10.2 120 43-162 9-168 (421)
359 PRK06645 DNA polymerase III su 56.9 1.3E+02 0.0028 26.0 11.0 103 104-212 189-293 (507)
360 PF04762 IKI3: IKI3 family; I 56.6 1.8E+02 0.0038 27.4 16.7 107 43-152 700-843 (928)
361 cd08819 CARD_MDA5_2 Caspase ac 56.4 49 0.0011 20.9 7.1 65 107-195 21-85 (88)
362 PF10579 Rapsyn_N: Rapsyn N-te 56.0 47 0.001 20.6 5.7 53 42-94 11-65 (80)
363 COG2405 Predicted nucleic acid 55.0 34 0.00074 23.7 4.4 43 178-221 112-154 (157)
364 PF04097 Nic96: Nup93/Nic96; 54.5 1.6E+02 0.0034 26.2 14.5 75 130-206 265-357 (613)
365 PRK09462 fur ferric uptake reg 54.5 65 0.0014 22.4 6.1 44 182-225 22-66 (148)
366 PF12796 Ank_2: Ankyrin repeat 53.7 49 0.0011 20.1 5.0 81 100-210 6-86 (89)
367 PRK07003 DNA polymerase III su 52.7 1.9E+02 0.0041 26.6 12.0 100 103-210 179-279 (830)
368 PF02259 FAT: FAT domain; Int 52.3 1.2E+02 0.0026 24.1 12.5 54 153-206 117-176 (352)
369 COG1466 HolA DNA polymerase II 52.3 1.2E+02 0.0027 24.4 8.2 93 59-158 149-243 (334)
370 PF01475 FUR: Ferric uptake re 51.8 39 0.00085 22.4 4.5 45 127-171 11-56 (120)
371 KOG1130 Predicted G-alpha GTPa 50.9 87 0.0019 26.3 6.8 48 47-94 27-77 (639)
372 PRK11639 zinc uptake transcrip 50.8 90 0.002 22.3 7.6 58 114-172 17-75 (169)
373 COG2178 Predicted RNA-binding 50.7 76 0.0017 23.5 5.9 18 135-152 133-150 (204)
374 KOG4555 TPR repeat-containing 50.5 83 0.0018 21.9 9.8 52 99-152 54-106 (175)
375 PRK14962 DNA polymerase III su 49.4 1.7E+02 0.0037 25.1 13.5 85 49-137 208-292 (472)
376 PF08564 CDC37_C: Cdc37 C term 49.2 13 0.00028 24.1 1.7 37 79-119 28-64 (99)
377 cd07153 Fur_like Ferric uptake 49.0 51 0.0011 21.6 4.7 33 105-137 17-49 (116)
378 TIGR03581 EF_0839 conserved hy 48.9 1E+02 0.0022 23.3 6.3 84 103-203 136-235 (236)
379 PF08311 Mad3_BUB1_I: Mad3/BUB 48.5 83 0.0018 21.3 7.7 58 89-148 66-124 (126)
380 TIGR01503 MthylAspMut_E methyl 48.3 51 0.0011 27.9 5.2 138 21-164 25-217 (480)
381 KOG3807 Predicted membrane pro 48.2 1.5E+02 0.0033 24.2 8.4 65 99-165 286-354 (556)
382 PF08870 DUF1832: Domain of un 48.1 81 0.0017 21.0 5.6 85 140-225 6-96 (113)
383 smart00777 Mad3_BUB1_I Mad3/BU 48.1 52 0.0011 22.4 4.5 43 105-147 80-123 (125)
384 KOG0991 Replication factor C, 48.0 1.3E+02 0.0028 23.3 10.9 102 49-157 171-272 (333)
385 PRK14700 recombination factor 48.0 1.4E+02 0.0031 23.8 9.7 45 43-87 132-176 (300)
386 KOG2610 Uncharacterized conser 47.3 1.6E+02 0.0034 24.1 11.3 49 49-98 115-163 (491)
387 PLN03025 replication factor C 46.2 1.5E+02 0.0033 23.6 11.3 86 65-158 173-259 (319)
388 PF02607 B12-binding_2: B12 bi 46.0 50 0.0011 19.9 4.0 40 99-138 12-51 (79)
389 COG4003 Uncharacterized protei 45.9 47 0.001 20.7 3.6 31 124-154 31-62 (98)
390 PF10366 Vps39_1: Vacuolar sor 45.2 87 0.0019 20.6 7.3 27 178-204 41-67 (108)
391 TIGR02561 HrpB1_HrpK type III 45.2 1.1E+02 0.0024 21.6 12.4 19 99-117 55-73 (153)
392 COG0735 Fur Fe2+/Zn2+ uptake r 45.1 1E+02 0.0023 21.4 7.2 62 110-172 8-70 (145)
393 PF11838 ERAP1_C: ERAP1-like C 45.0 1.5E+02 0.0033 23.3 11.6 48 104-151 146-197 (324)
394 PF10963 DUF2765: Protein of u 44.9 50 0.0011 20.6 3.7 34 67-100 11-44 (83)
395 KOG0292 Vesicle coat complex C 44.2 2.4E+02 0.0053 26.4 8.9 59 100-158 1059-1119(1202)
396 PF14669 Asp_Glu_race_2: Putat 43.5 1.2E+02 0.0027 22.5 6.0 59 39-97 134-206 (233)
397 PRK13341 recombination factor 43.0 2.6E+02 0.0057 25.5 14.2 101 118-221 192-303 (725)
398 smart00164 TBC Domain in Tre-2 42.9 96 0.0021 22.4 5.8 45 109-153 152-197 (199)
399 PF03745 DUF309: Domain of unk 42.8 68 0.0015 18.6 5.8 42 42-83 4-45 (62)
400 KOG2063 Vacuolar assembly/sort 42.7 2.6E+02 0.0056 26.1 9.1 40 184-223 599-638 (877)
401 KOG0292 Vesicle coat complex C 42.6 1.1E+02 0.0023 28.5 6.6 71 18-98 628-698 (1202)
402 PF09397 Ftsk_gamma: Ftsk gamm 42.0 46 0.001 19.7 3.1 45 24-69 6-50 (65)
403 COG4455 ImpE Protein of avirul 41.7 1.4E+02 0.0031 22.8 6.2 52 46-98 10-61 (273)
404 KOG1498 26S proteasome regulat 41.6 2.1E+02 0.0045 23.9 14.0 164 49-219 24-256 (439)
405 KOG3636 Uncharacterized conser 41.5 2.2E+02 0.0048 24.2 10.2 38 169-206 176-213 (669)
406 KOG4648 Uncharacterized conser 41.5 1E+02 0.0023 25.2 5.8 47 99-147 108-155 (536)
407 PF08461 HTH_12: Ribonuclease 41.4 54 0.0012 19.3 3.4 38 186-223 7-44 (66)
408 COG4003 Uncharacterized protei 41.0 89 0.0019 19.5 4.6 34 182-216 37-70 (98)
409 PF09613 HrpB1_HrpK: Bacterial 40.7 1.3E+02 0.0029 21.4 13.1 51 99-153 21-74 (160)
410 PF14840 DNA_pol3_delt_C: Proc 40.6 34 0.00073 23.2 2.7 29 100-128 9-37 (125)
411 COG1747 Uncharacterized N-term 40.5 2.5E+02 0.0054 24.5 11.8 136 15-152 71-234 (711)
412 cd00280 TRFH Telomeric Repeat 40.3 1.5E+02 0.0032 21.9 8.5 61 102-165 83-150 (200)
413 KOG0687 26S proteasome regulat 40.1 2E+02 0.0044 23.4 11.4 105 52-163 37-148 (393)
414 PF11817 Foie-gras_1: Foie gra 39.2 1.7E+02 0.0038 22.3 8.3 83 104-205 161-247 (247)
415 PRK14952 DNA polymerase III su 38.7 2.8E+02 0.0061 24.6 12.3 99 105-210 180-279 (584)
416 KOG2058 Ypt/Rab GTPase activat 38.5 2.5E+02 0.0053 23.8 12.5 148 60-211 149-352 (436)
417 smart00386 HAT HAT (Half-A-TPR 38.2 46 0.00099 15.3 3.6 29 51-80 1-29 (33)
418 cd02679 MIT_spastin MIT: domai 38.1 92 0.002 19.2 4.1 45 101-152 21-68 (79)
419 smart00638 LPD_N Lipoprotein N 37.8 2.8E+02 0.006 24.3 16.6 54 41-98 313-366 (574)
420 KOG2041 WD40 repeat protein [G 37.8 3.2E+02 0.007 25.0 11.4 85 51-146 748-832 (1189)
421 smart00843 Ftsk_gamma This dom 37.8 55 0.0012 19.2 2.9 44 25-69 6-49 (63)
422 PRK14953 DNA polymerase III su 37.5 2.7E+02 0.0058 24.0 11.3 68 90-159 201-281 (486)
423 PRK14960 DNA polymerase III su 37.4 3.2E+02 0.0069 24.8 11.8 99 104-210 179-278 (702)
424 KOG4077 Cytochrome c oxidase, 37.3 1.4E+02 0.003 20.6 9.5 53 166-219 74-126 (149)
425 PRK00423 tfb transcription ini 37.3 2.1E+02 0.0046 22.8 9.7 118 103-223 142-272 (310)
426 PF02841 GBP_C: Guanylate-bind 37.0 99 0.0021 24.5 5.3 45 102-148 43-87 (297)
427 PF09670 Cas_Cas02710: CRISPR- 36.4 2.5E+02 0.0053 23.2 11.0 57 43-100 137-197 (379)
428 PRK11906 transcriptional regul 36.3 2.7E+02 0.0059 23.7 10.0 44 103-148 353-397 (458)
429 cd00280 TRFH Telomeric Repeat 36.2 98 0.0021 22.8 4.5 25 181-205 116-140 (200)
430 PF14669 Asp_Glu_race_2: Putat 35.9 1.8E+02 0.004 21.7 11.1 50 99-148 143-206 (233)
431 PRK05907 hypothetical protein; 35.9 70 0.0015 25.6 4.2 39 34-72 201-240 (311)
432 KOG4648 Uncharacterized conser 35.8 70 0.0015 26.1 4.1 71 131-203 105-185 (536)
433 PF07304 SRA1: Steroid recepto 35.6 1.6E+02 0.0035 20.9 6.0 48 51-98 68-116 (157)
434 PF09477 Type_III_YscG: Bacter 35.6 1.3E+02 0.0029 19.9 8.1 82 50-154 19-100 (116)
435 PF09868 DUF2095: Uncharacteri 35.5 1.4E+02 0.003 20.0 5.4 26 129-154 67-92 (128)
436 PRK05907 hypothetical protein; 35.4 2.3E+02 0.005 22.7 8.3 98 56-158 140-240 (311)
437 PF07443 HARP: HepA-related pr 35.3 21 0.00045 20.3 0.9 34 51-84 6-39 (55)
438 PRK05629 hypothetical protein; 35.3 79 0.0017 25.2 4.5 36 37-72 193-228 (318)
439 KOG0890 Protein kinase of the 34.9 3.3E+02 0.0072 28.5 9.0 100 48-150 1394-1510(2382)
440 COG1466 HolA DNA polymerase II 34.9 2.4E+02 0.0052 22.7 10.2 90 110-209 149-241 (334)
441 smart00777 Mad3_BUB1_I Mad3/BU 34.8 1.1E+02 0.0024 20.8 4.5 43 54-96 80-123 (125)
442 KOG1941 Acetylcholine receptor 34.6 2.7E+02 0.0059 23.2 7.8 100 49-148 134-271 (518)
443 COG2405 Predicted nucleic acid 34.3 1.1E+02 0.0023 21.4 4.2 40 125-165 112-151 (157)
444 PRK06585 holA DNA polymerase I 34.3 70 0.0015 25.7 4.2 46 25-70 199-244 (343)
445 PRK11906 transcriptional regul 34.3 3E+02 0.0064 23.5 15.3 91 52-153 273-368 (458)
446 PF02847 MA3: MA3 domain; Int 33.9 1.3E+02 0.0029 19.4 5.9 63 127-191 6-68 (113)
447 PHA02940 hypothetical protein; 33.8 2.2E+02 0.0049 22.0 6.3 58 76-133 146-214 (315)
448 TIGR01503 MthylAspMut_E methyl 33.7 76 0.0016 26.9 4.1 50 100-152 66-115 (480)
449 PF01371 Trp_repressor: Trp re 33.6 84 0.0018 19.8 3.5 46 74-119 2-50 (87)
450 KOG1147 Glutamyl-tRNA syntheta 33.6 82 0.0018 27.3 4.3 58 59-116 255-331 (712)
451 KOG4567 GTPase-activating prot 33.3 2.2E+02 0.0047 23.0 6.3 30 143-172 263-292 (370)
452 KOG2223 Uncharacterized conser 33.2 3E+02 0.0066 23.4 8.9 58 58-115 460-520 (586)
453 PLN03192 Voltage-dependent pot 32.9 4E+02 0.0087 24.7 10.9 12 130-141 626-637 (823)
454 KOG4567 GTPase-activating prot 32.9 2.6E+02 0.0057 22.6 7.9 48 108-155 263-310 (370)
455 COG5210 GTPase-activating prot 32.8 3.2E+02 0.007 23.5 10.4 41 58-98 363-403 (496)
456 PF12862 Apc5: Anaphase-promot 32.4 1.3E+02 0.0028 18.9 8.1 56 43-98 4-67 (94)
457 PF14853 Fis1_TPR_C: Fis1 C-te 32.4 97 0.0021 17.4 4.5 38 181-220 6-43 (53)
458 PRK14971 DNA polymerase III su 32.3 3.7E+02 0.008 24.0 13.1 97 105-210 183-281 (614)
459 PRK06920 dnaE DNA polymerase I 32.0 4.5E+02 0.0099 25.5 9.2 81 126-208 694-780 (1107)
460 PRK07914 hypothetical protein; 31.8 2.7E+02 0.0058 22.2 9.1 76 51-128 129-235 (320)
461 PF13934 ELYS: Nuclear pore co 31.6 2.3E+02 0.005 21.4 8.9 45 49-98 90-134 (226)
462 KOG1258 mRNA processing protei 31.6 3.6E+02 0.0079 23.7 11.4 88 99-204 90-179 (577)
463 PRK14953 DNA polymerase III su 31.4 3.4E+02 0.0074 23.4 11.7 100 104-211 180-280 (486)
464 KOG2214 Predicted esterase of 31.3 1.7E+02 0.0036 25.3 5.7 38 173-211 313-350 (543)
465 PRK13342 recombination factor 31.0 3.1E+02 0.0068 22.8 16.3 109 54-165 154-272 (413)
466 TIGR00510 lipA lipoate synthas 30.6 1.2E+02 0.0026 24.1 4.8 63 88-154 174-236 (302)
467 smart00804 TAP_C C-terminal do 30.5 74 0.0016 18.7 2.7 24 100-123 37-61 (63)
468 PRK09857 putative transposase; 30.4 2.8E+02 0.006 22.0 9.8 67 126-211 209-275 (292)
469 PRK00423 tfb transcription ini 30.4 2.8E+02 0.0061 22.1 11.1 101 53-154 143-252 (310)
470 KOG2034 Vacuolar sorting prote 30.4 4.6E+02 0.0099 24.5 15.4 23 126-148 533-555 (911)
471 PRK07452 DNA polymerase III su 30.2 2.8E+02 0.0061 22.0 10.4 96 110-212 139-235 (326)
472 COG2987 HutU Urocanate hydrata 30.2 47 0.001 28.0 2.4 60 86-145 217-287 (561)
473 PRK06645 DNA polymerase III su 30.1 3.7E+02 0.008 23.3 11.1 34 125-159 260-293 (507)
474 PF13934 ELYS: Nuclear pore co 30.0 2.4E+02 0.0053 21.3 7.8 44 21-64 89-135 (226)
475 PRK12928 lipoyl synthase; Prov 29.3 1.1E+02 0.0024 24.2 4.3 58 127-206 175-232 (290)
476 KOG3330 Transport protein part 29.2 1.5E+02 0.0032 21.1 4.3 40 59-98 9-49 (183)
477 PRK10292 hypothetical protein; 28.9 1.3E+02 0.0028 17.7 6.6 58 87-149 3-60 (69)
478 COG2987 HutU Urocanate hydrata 28.8 69 0.0015 27.0 3.1 20 136-155 216-235 (561)
479 KOG1130 Predicted G-alpha GTPa 28.7 64 0.0014 27.1 2.9 54 132-200 26-79 (639)
480 PRK14970 DNA polymerase III su 28.6 2.1E+02 0.0046 23.2 6.1 57 25-82 222-278 (367)
481 PRK07003 DNA polymerase III su 28.4 4.9E+02 0.011 24.2 15.6 38 121-159 244-281 (830)
482 KOG1147 Glutamyl-tRNA syntheta 28.1 1.1E+02 0.0023 26.7 4.2 21 184-204 311-331 (712)
483 PRK12928 lipoyl synthase; Prov 28.0 2.7E+02 0.0059 22.0 6.3 62 89-154 172-233 (290)
484 PRK05629 hypothetical protein; 27.8 3.1E+02 0.0068 21.8 11.5 24 136-159 206-229 (318)
485 TIGR01529 argR_whole arginine 27.7 1.1E+02 0.0023 21.5 3.6 38 182-219 6-43 (146)
486 PRK09462 fur ferric uptake reg 27.5 2.1E+02 0.0046 19.8 6.9 59 113-172 7-67 (148)
487 PF10475 DUF2450: Protein of u 27.5 3.1E+02 0.0067 21.6 13.0 69 75-143 130-217 (291)
488 PF07304 SRA1: Steroid recepto 27.2 1.6E+02 0.0035 20.9 4.5 33 119-151 86-118 (157)
489 PF06957 COPI_C: Coatomer (COP 27.0 2.1E+02 0.0045 24.2 5.6 103 48-155 215-332 (422)
490 PRK14950 DNA polymerase III su 26.6 4.5E+02 0.0098 23.2 11.0 69 90-160 202-283 (585)
491 PRK14951 DNA polymerase III su 26.5 4.7E+02 0.01 23.4 16.7 38 121-159 249-286 (618)
492 PF02184 HAT: HAT (Half-A-TPR) 26.5 96 0.0021 15.4 2.5 24 52-77 2-25 (32)
493 PRK05414 urocanate hydratase; 26.3 82 0.0018 27.1 3.2 47 136-213 216-262 (556)
494 TIGR02328 conserved hypothetic 26.2 68 0.0015 21.3 2.2 17 196-212 55-71 (120)
495 KOG1941 Acetylcholine receptor 26.2 3.9E+02 0.0084 22.3 12.0 102 101-202 135-272 (518)
496 TIGR01228 hutU urocanate hydra 26.1 79 0.0017 27.0 3.1 48 135-213 206-253 (545)
497 PF11123 DNA_Packaging_2: DNA 26.0 1.6E+02 0.0035 17.9 4.6 34 103-137 12-45 (82)
498 PF13606 Ank_3: Ankyrin repeat 26.0 88 0.0019 14.8 2.9 26 42-71 4-29 (30)
499 PHA03100 ankyrin repeat protei 25.3 4.1E+02 0.0089 22.3 9.4 9 198-206 298-306 (480)
500 KOG0307 Vesicle coat complex C 25.3 3.6E+02 0.0079 25.6 7.2 53 58-111 983-1035(1049)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.5e-39 Score=282.62 Aligned_cols=214 Identities=20% Similarity=0.284 Sum_probs=115.2
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcch-------hhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRS-------LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
+|+.++.+|++.|++++|.+++++|.. ..|+.++..+ +.|++++|.++|++|++.|+.||..+|++||.+|+
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 334555555555555555555554432 2233444422 45555555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHH--------------------------------------------------------HhcCCHHHH
Q 045820 84 MLNEQDTAVKFFSNH--------------------------------------------------------LMVGRVEEA 107 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~--------------------------------------------------------~~~g~~~~a 107 (225)
+.|++++|.++|++| ++.|++++|
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 555555555555444 344445555
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhc
Q 045820 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEM 170 (225)
Q Consensus 108 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~ 170 (225)
.++|++|.+.|+.||..+|+++|++|++.|++++|.++|++|.+.|+.||..+|++|| +|.+.
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555555555555555555555555555555555555554 33345
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 171 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++.|
T Consensus 714 g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 5666666666666666666666666666666666666666666666666666554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.8e-39 Score=281.37 Aligned_cols=217 Identities=16% Similarity=0.226 Sum_probs=199.6
Q ss_pred CCCCC-chhhHhhhcCCCCCChhhcchhhcCcch---------hhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhh
Q 045820 6 ANSPT-PFSVLLVDSPSRSPSAAESLDLKENPRS---------LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSD 74 (225)
Q Consensus 6 ~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~ 74 (225)
+..|+ .+|+.++.+|++.|++++|.+++.+|.. ..|+.++..+ +.|++++|.++|+.|.+.|+.|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 34444 5666889999999999999988887743 3466777754 89999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 045820 75 FNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK 135 (225)
Q Consensus 75 ~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 135 (225)
|+++|.+|++.|++++|.++|++| ++.|++++|.++|++|.+.|+.||..+||++|.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999 7789999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 045820 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198 (225)
Q Consensus 136 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 198 (225)
.|++++|.++|++|.+.|+.||..||+++| +|.+.|+.||..||+++|.+|++.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999 577889999999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhh
Q 045820 199 LFLMYEHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 199 ~~~m~~~g~~p~~~~~~~ll~~~~ 222 (225)
|++|.+.|+.||..+|++|+..|.
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999997653
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=262.88 Aligned_cols=219 Identities=15% Similarity=0.180 Sum_probs=190.5
Q ss_pred CCCC-chhhHhhhcCCCCCChhhcchhhcCcch---hhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCC----------
Q 045820 7 NSPT-PFSVLLVDSPSRSPSAAESLDLKENPRS---LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWS---------- 71 (225)
Q Consensus 7 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~---------- 71 (225)
..|+ .+++.+++.|++.|++++|.++|++|.. ..|+.++..+ +.|++++|+++|++|.+.|+.|+
T Consensus 154 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 3344 5666899999999999999999998754 4588888754 88999999999999977766555
Q ss_pred -------------------------hhhHHHHHHHHHhcCCHHHHHHHHHHH---------------HhcCCHHHHHHHH
Q 045820 72 -------------------------VSDFNDLLMALVMLNEQDTAVKFFSNH---------------LMVGRVEEAYEML 111 (225)
Q Consensus 72 -------------------------~~~~~~li~~~~~~~~~~~a~~~~~~~---------------~~~g~~~~a~~~~ 111 (225)
..+||+||++|+++|++++|.++|++| ++.|++++|.++|
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 455677888999999999999999888 8889999999999
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhh-------------cCCCCCHHH
Q 045820 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE-------------MGHIPRTIT 178 (225)
Q Consensus 112 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~-------------~~~~p~~~~ 178 (225)
++|.+.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.||..+|++|+.++. .-..||..+
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t 393 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS 393 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeee
Confidence 9999999999999999999999999999999999999999999999999999995542 234689999
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
||+||.+|+++|+.++|.++|++|.+.|+.||..||+.+|.+|+++|
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999998876
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=256.40 Aligned_cols=208 Identities=17% Similarity=0.247 Sum_probs=191.7
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcch---hhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRS---LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
.+++.|++.|++.|++++|.++|++|.. ..|+.++..+ +.|++++|+++|++|.+.|+.||..||+++|.+|++.|
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 5566899999999999999999998764 4677888755 89999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH-------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 87 EQDTAVKFFSNH-------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 87 ~~~~a~~~~~~~-------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
+++.|.+++..| ++.|++++|.++|++|. .||+.+||+||.+|+++|+.++|.++|+
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999988 78899999999999997 4899999999999999999999999999
Q ss_pred HHHHcCCCccHHHHHHHH-----------------HHhh-cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 148 EAIERGVTQNVVTLIQLL-----------------QRLE-MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 148 ~m~~~g~~p~~~t~~~l~-----------------~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
+|.+.|+.||..||++++ .|.+ .|+.|+..+|+.+|.+|++.|++++|.+++++| ++.|
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p 492 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKP 492 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCC
Confidence 999999999999999999 3433 589999999999999999999999999998765 6899
Q ss_pred CHHHHHHHHHHhhcCC
Q 045820 210 SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 210 ~~~~~~~ll~~~~~~g 225 (225)
|..+|++|+.+|+++|
T Consensus 493 ~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 493 TVNMWAALLTACRIHK 508 (697)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999998875
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-34 Score=252.87 Aligned_cols=215 Identities=16% Similarity=0.174 Sum_probs=181.1
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcch---hhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhH-----------
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRS---LQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDF----------- 75 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~----------- 75 (225)
..++.++..|++.|+++.|.++|++|.. ..|+.++..+ +.|++++|+++|++|++.|+.||..||
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 4556788888888888888888888653 4577777755 788888888888888887777776665
Q ss_pred ------------------------HHHHHHHHhcCCHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHhh
Q 045820 76 ------------------------NDLLMALVMLNEQDTAVKFFSNH---------------LMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 76 ------------------------~~li~~~~~~~~~~~a~~~~~~~---------------~~~g~~~~a~~~~~~m~~ 116 (225)
|+||.+|++.|+++.|.++|++| ++.|++++|+++|++|.+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66667778888888888888877 778999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh-------------hcCCCCCHHHHHHHH
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------------EMGHIPRTITFNNVI 183 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~-------------~~~~~p~~~~~~~li 183 (225)
.|+.||..||+++|.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.++ +.-..||..+||++|
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 9999999999999999999999999999999999999999999999999333 333468889999999
Q ss_pred HHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 999999999999999999998999999999999998888765
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-32 Score=243.41 Aligned_cols=214 Identities=14% Similarity=0.156 Sum_probs=148.6
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcc---hhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPR---SLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML- 85 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~- 85 (225)
..++.|+++|++.|++++|.++|++|. ...|+.++..+ +.|++++|+++|++|.+.|+.||..||+.+|.+|++.
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 455577788888888888888877764 34566666644 7777777777777777776666666555555555554
Q ss_pred ----------------------------------CCHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHhh
Q 045820 86 ----------------------------------NEQDTAVKFFSNH---------------LMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 86 ----------------------------------~~~~~a~~~~~~~---------------~~~g~~~~a~~~~~~m~~ 116 (225)
|+++.|.++|++| .+.|++++|.++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5555555555444 556666666777776666
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh-------------hcCCCCCHHHHHHHH
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------------EMGHIPRTITFNNVI 183 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~-------------~~~~~p~~~~~~~li 183 (225)
.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+..+|++|+.++ +.-..+|..+||++|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 6666777777777777777777777777777777777777777777766332 222356777888888
Q ss_pred HHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.+|+++|+.++|.++|++|.+ +++||..||+.+|.+|++.|
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 888888888888888888875 58899999999988888754
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.70 E-value=6e-17 Score=92.40 Aligned_cols=50 Identities=32% Similarity=0.549 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999986
No 8
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=2.4e-14 Score=112.46 Aligned_cols=179 Identities=20% Similarity=0.273 Sum_probs=145.4
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHH-HHHHHH----------HhcCCHHH
Q 045820 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN--EQDTAV-KFFSNH----------LMVGRVEE 106 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--~~~~a~-~~~~~~----------~~~g~~~~ 106 (225)
+-+.++..+.+|.++++.-+|+.|++.|+..+...--.|+..-+-.+ ++--+. +-|-.| =+.|++.+
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 45568888999999999999999999999999988777776544333 222222 233333 22343333
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-------------HHhhcCCC
Q 045820 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-------------QRLEMGHI 173 (225)
Q Consensus 107 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-------------~~~~~~~~ 173 (225)
++-+.. +.+..||.+||.+.||-...+.|.+++.+-.....+.+..+||.+| +|....+.
T Consensus 198 ---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 198 ---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMT 270 (625)
T ss_pred ---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcC
Confidence 333333 3467899999999999999999999999999999999999999999 78899999
Q ss_pred CCHHHHHHHHHHHHccCcHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 174 PRTITFNNVIQALCGVGKIHK----ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
||..|||+++++.++.|+++. |.+++.+|++-|+.|...+|..+|+.++|.+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 999999999999999998875 5789999999999999999999999999864
No 9
>PF13041 PPR_2: PPR repeat family
Probab=99.62 E-value=1.6e-15 Score=86.40 Aligned_cols=50 Identities=42% Similarity=0.913 Sum_probs=45.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~ 188 (225)
||+.+||++|++|++.|++++|.++|++|++.|++ ||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~------------------P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIK------------------PDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC------------------CCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999998 777777777787764
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.54 E-value=1.7e-12 Score=105.64 Aligned_cols=208 Identities=17% Similarity=0.139 Sum_probs=147.8
Q ss_pred chhhHhhhcCCCCCChhhcchhhcC----cch------hhhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKEN----PRS------LQAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLL 79 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~----~~~------~~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 79 (225)
..+..+...+.+.|++++|...++. +.. ..+..+.. .++.|++++|..+|+++.+. -+.+..+++.+.
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la 148 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLL 148 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4555777788888888888876544 221 11222333 34778889999888888765 244677888888
Q ss_pred HHHHhcCCHHHHHHHHHHH-----------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 045820 80 MALVMLNEQDTAVKFFSNH-----------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136 (225)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~-----------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 136 (225)
..+.+.|++++|.+.++.+ ...|++++|...|+++.+.. +.+...+..+...|.+.
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 149 EIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHC
Confidence 8888888888888887666 24588888888888887643 22455777788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh-------------h--cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------------E--MGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 137 g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~-------------~--~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
|++++|..+++++.+.+......+++.+...+ + ....|+...+..+...+.+.|++++|..++++
T Consensus 228 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88888988888888654332234444444111 0 12347777778888999999999999999998
Q ss_pred HHhcCCCCCHHHHHHHHHHhh
Q 045820 202 MYEHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 202 m~~~g~~p~~~~~~~ll~~~~ 222 (225)
+.+. .|+..+++.++..+.
T Consensus 308 ~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 308 QLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHh--CcCHHHHHHHHHHhh
Confidence 8865 688888888887765
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.51 E-value=2.8e-12 Score=104.39 Aligned_cols=208 Identities=14% Similarity=0.063 Sum_probs=152.4
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHh
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWS---VSDFNDLLMALVM 84 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~ 84 (225)
.....+...|++++|+..+.++.... +..+.. ....|++++|..+++.+.+.+..++ ...+..+...|.+
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 33445677899999999998864332 122222 2388999999999999987643222 3568889999999
Q ss_pred cCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCC----HHhHHHHHHHHHhcCCHHHH
Q 045820 85 LNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPD----VYTYTAIMDGFCKVGRSNEA 142 (225)
Q Consensus 85 ~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a 142 (225)
.|+++.|..+|+++ .+.|++++|.+.++.+.+.+..++ ...|..+...+.+.|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999888 568999999999999987653332 12456677788999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHH-----------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 143 MELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 143 ~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
...|+++.+..- .+...+..+. ++.+.+......+++.+..+|.+.|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999987542 2233443333 1222221122467889999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHhhcCC
Q 045820 206 GKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 206 g~~p~~~~~~~ll~~~~~~g 225 (225)
.|+...+..+...+.++|
T Consensus 279 --~p~~~~~~~la~~~~~~g 296 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQE 296 (389)
T ss_pred --CCCchHHHHHHHHHHHhC
Confidence 477777788888887765
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.31 E-value=1.9e-09 Score=95.97 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=99.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+.|++++|...|+.+.+.. +.+...+..+..++.+.|++++|...|+.+ ...|++++|.++
T Consensus 613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555665555554432 224444555555555556666665555544 445666666666
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH----------------HhhcCCCC
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ----------------RLEMGHIP 174 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~----------------~~~~~~~p 174 (225)
++.+.+.+ +.+...+..+...+.+.|++++|...|.++.+.+..+ .++..+.. ..-.....
T Consensus 692 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 692 AKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 66665543 2355566666666777777777777777766554322 33322221 01112234
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
+...+..+...|...|++++|..+|+++.+.. +.+..+++.+...+.+.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 56677777777888888888888888887653 34566677666666544
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.30 E-value=6.9e-10 Score=98.74 Aligned_cols=211 Identities=16% Similarity=0.086 Sum_probs=166.4
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+...+.+.|++++|...+.+.... .+..+.. .+..|++++|..+++.+.+.+ +.+...+..+...+.
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 45557788899999999999998774322 1222333 348899999999999998875 557788888999999
Q ss_pred hcCCHHHHHHHHHHH-----------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 84 MLNEQDTAVKFFSNH-----------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~-----------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
+.|++++|...|+.+ ...|++++|.+.+.++.+.. +.+...++.+...|.+.|++++|...|
T Consensus 715 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred HCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999999876 56799999999999988753 457888999999999999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHh------------hc--C-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 147 NEAIERGVTQNVVTLIQLLQRL------------EM--G-HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 147 ~~m~~~g~~p~~~t~~~l~~~~------------~~--~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
+++.+.. +.+..+++.+.... +. . ..-+..++..+...+...|++++|..+++++.+.+.. +.
T Consensus 794 ~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~ 871 (899)
T TIGR02917 794 RTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AA 871 (899)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ch
Confidence 9998865 34566666554211 11 1 1234556778888899999999999999999987643 88
Q ss_pred HHHHHHHHHhhcCC
Q 045820 212 TSHDMLIKKLDQQP 225 (225)
Q Consensus 212 ~~~~~ll~~~~~~g 225 (225)
.++..+..+|.+.|
T Consensus 872 ~~~~~l~~~~~~~g 885 (899)
T TIGR02917 872 AIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998876
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=2.9e-10 Score=89.93 Aligned_cols=97 Identities=14% Similarity=0.336 Sum_probs=84.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 045820 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133 (225)
Q Consensus 69 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 133 (225)
+.+..||.+||.+.|+-...+.|.+++++- ...-.+....++..+|.+..+.||..|||+++.+.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 557889999999999999999999999887 22223344478999999999999999999999999
Q ss_pred HhcCCHHH----HHHHHHHHHHcCCCccHHHHHHHH
Q 045820 134 CKVGRSNE----AMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 134 ~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
++.|+++. |.+++.+|++.|+.|+..+|..+|
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~ii 319 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLII 319 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 99998776 478889999999999999999998
No 15
>PF12854 PPR_1: PPR repeat
Probab=99.25 E-value=1.1e-11 Score=64.09 Aligned_cols=34 Identities=50% Similarity=0.991 Sum_probs=32.4
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
+|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
No 16
>PF12854 PPR_1: PPR repeat
Probab=99.19 E-value=2.9e-11 Score=62.50 Aligned_cols=34 Identities=29% Similarity=0.563 Sum_probs=31.7
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 170 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+|+.||..|||+||.+||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678999999999999999999999999999984
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.03 E-value=5.1e-07 Score=67.48 Aligned_cols=154 Identities=15% Similarity=0.081 Sum_probs=106.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAY 108 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~ 108 (225)
....|++++|...+++..+.. +.+...+..+...+...|+++.|.+.++.. ...|++++|.
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~ 119 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAM 119 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 347788888888888776553 334566777777888888888887777655 4567788888
Q ss_pred HHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 045820 109 EMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC 187 (225)
Q Consensus 109 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~ 187 (225)
+.|.+..+....+ ....+..+-..+.+.|++++|...+.+..+..- .+...+..+...+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------------~~~~~~~~la~~~~ 180 (234)
T TIGR02521 120 QQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-------------------QRPESLLELAELYY 180 (234)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------------------CChHHHHHHHHHHH
Confidence 8888776532222 344566677778888888888888888776432 23456777778888
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 188 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
..|++++|..++++..+. ...+...+..+...+
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIA 213 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 888888888888888765 233445554444444
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.97 E-value=3.5e-07 Score=79.42 Aligned_cols=211 Identities=17% Similarity=0.118 Sum_probs=147.7
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh-----hhH-HHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL-----QAQ-RFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
.....+..+....|++++|+..+++.... ... .+.. ..+.|++++|...+++..+.. +-+...+..+...+.
T Consensus 77 ~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~ 155 (656)
T PRK15174 77 DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLV 155 (656)
T ss_pred hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44555557777899999999888874332 111 2222 348899999999999887762 335677888999999
Q ss_pred hcCCHHHHHHHHHHH-----------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 84 MLNEQDTAVKFFSNH-----------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~-----------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
..|+.++|...++.+ ...|++++|...++.+.+....++...+..+..++.+.|++++|...+
T Consensus 156 ~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 156 LMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred HCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999998888665 457999999999999876543344555666678889999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHh-hc------------------CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 147 NEAIERGVTQNVVTLIQLLQRL-EM------------------GHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 147 ~~m~~~g~~p~~~t~~~l~~~~-~~------------------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
++..+..-. +...+..+-..+ .. ...| +...+..+...+...|++++|...+++..+.
T Consensus 236 ~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l- 313 (656)
T PRK15174 236 ESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT- 313 (656)
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 998875422 222222222100 00 1223 4567888899999999999999999998874
Q ss_pred CCCC-HHHHHHHHHHhhcCC
Q 045820 207 KIPS-RTSHDMLIKKLDQQP 225 (225)
Q Consensus 207 ~~p~-~~~~~~ll~~~~~~g 225 (225)
.|+ ...+..+-.+|.+.|
T Consensus 314 -~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 314 -HPDLPYVRAMYARALRQVG 332 (656)
T ss_pred -CCCCHHHHHHHHHHHHHCC
Confidence 344 455556666666554
No 19
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.97 E-value=7.9e-09 Score=88.21 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=109.9
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---------CCCCCCHHhHHH
Q 045820 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN---------DGLKPDVYTYTA 128 (225)
Q Consensus 58 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~---------~g~~p~~~~~~~ 128 (225)
..+-.+...|+.||.+||..+|.-||..|+++.|- +|..| +..+..--..+|.-... +--.|...||+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~ 88 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTN 88 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCCCCchhHHHH
Confidence 46677889999999999999999999999999998 88777 11111111111111110 112578889999
Q ss_pred HHHHHHhcCCHHH---HHHHHHHHH----HcC-----------------CCccHHHHHHHH-------------------
Q 045820 129 IMDGFCKVGRSNE---AMELLNEAI----ERG-----------------VTQNVVTLIQLL------------------- 165 (225)
Q Consensus 129 ll~~~~~~g~~~~---a~~~~~~m~----~~g-----------------~~p~~~t~~~l~------------------- 165 (225)
++.+|.++||+.. .++.+.... ..| .-||..+-..+.
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999999998654 333222211 122 224444333222
Q ss_pred ------------------------HHhhcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 166 ------------------------QRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 166 ------------------------~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
.+++.... |+..+|.+++.+-.-+|+++.|..++.+|.+.|+..+.+-|-.|+-+
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 33444444 99999999999999999999999999999999988887766655543
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.94 E-value=4.5e-07 Score=78.75 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=35.1
Q ss_pred HHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045820 107 AYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185 (225)
Q Consensus 107 a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~ 185 (225)
|...|++..+. .| +...+..+...+.+.|++++|...+++..+.. |+ +...+..+...
T Consensus 269 A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~-----------------~~~a~~~La~~ 327 (656)
T PRK15174 269 AAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PD-----------------LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-----------------CHHHHHHHHHH
Confidence 44444444432 22 33344444555555555555555555444321 11 22334444455
Q ss_pred HHccCcHHHHHHHHHHHHh
Q 045820 186 LCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~ 204 (225)
|.+.|++++|...++.+.+
T Consensus 328 l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555543
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.93 E-value=1.5e-08 Score=78.96 Aligned_cols=206 Identities=14% Similarity=0.161 Sum_probs=84.7
Q ss_pred HhhhcCCCCCChhhcchhhcC-cchh------hhHHHHHH--HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 15 LLVDSPSRSPSAAESLDLKEN-PRSL------QAQRFVDK--IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~-~~~~------~~~~l~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
.+...+.+.|++++|++++.+ .... .+..+... ...++.+.|...++++.+.+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 557778889999999998843 2222 12222222 2678889999999988876544 56667777777 688
Q ss_pred CCHHHHHHHHHHH-----------------HhcCCHHHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 86 NEQDTAVKFFSNH-----------------LMVGRVEEAYEMLMNVKNDG-LKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 86 ~~~~~a~~~~~~~-----------------~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
++.++|.+++... ...++++++.+++++..... .+.+...|..+-..+.+.|+.++|+.+++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888776544 66788899999988876532 34577788888888999999999999999
Q ss_pred HHHHcCCCcc-HHHHHHHH----------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 148 EAIERGVTQN-VVTLIQLL----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 148 ~m~~~g~~p~-~~t~~~l~----------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
+..+.. |+ ....+.++ .........|...|..+..+|...|+.++|..++++..+.. +-|
T Consensus 171 ~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 988753 43 33444443 11222234667788999999999999999999999988742 336
Q ss_pred HHHHHHHHHHhhcCC
Q 045820 211 RTSHDMLIKKLDQQP 225 (225)
Q Consensus 211 ~~~~~~ll~~~~~~g 225 (225)
..+...+.+++...|
T Consensus 248 ~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 248 PLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHHHHHHHHT---
T ss_pred ccccccccccccccc
Confidence 777777777776655
No 22
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.88 E-value=6.3e-08 Score=82.89 Aligned_cols=172 Identities=15% Similarity=0.074 Sum_probs=107.1
Q ss_pred CCCCchhhHhhhcCCCCCChhhcchhhcCcchhhh--H-HHHHHH-----HhCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 045820 7 NSPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQA--Q-RFVDKI-----KASPLKERIDIFNSIKKDGTNWSVSDFNDL 78 (225)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~l~~~~-----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 78 (225)
.|...+|..++..||..|+++.|- .|.-|+..+. . .+.... ++++.+.+. .|...||..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 444567789999999999998877 6655543332 1 122222 333443333 7888999999
Q ss_pred HHHHHhcCCHHH---HHHHHHHH-------------------------------------HhcCCHHHHH----------
Q 045820 79 LMALVMLNEQDT---AVKFFSNH-------------------------------------LMVGRVEEAY---------- 108 (225)
Q Consensus 79 i~~~~~~~~~~~---a~~~~~~~-------------------------------------~~~g~~~~a~---------- 108 (225)
+.+|...||+.. +.+.+..+ .-.|.++.++
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998654 33322222 1112222222
Q ss_pred --------------------HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---
Q 045820 109 --------------------EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165 (225)
Q Consensus 109 --------------------~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~--- 165 (225)
++.+..+.-.-.|+..+|.+++++-.-+|+.+.|..++.+|++.|+..+.+.|-.|+
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~ 249 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGI 249 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhcC
Confidence 222222221115899999999999999999999999999999999986666554444
Q ss_pred -----------HHhhcCCCCCHHHHHHHHHHHHccC
Q 045820 166 -----------QRLEMGHIPRTITFNNVIQALCGVG 190 (225)
Q Consensus 166 -----------~~~~~~~~p~~~~~~~li~~~~~~g 190 (225)
.|.+.|+.|+..|+..-+..+..+|
T Consensus 250 ~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 250 NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 3444455555555555444444433
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.86 E-value=8.9e-07 Score=66.18 Aligned_cols=172 Identities=11% Similarity=0.017 Sum_probs=134.3
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.+..+...+...|++++|.+.+.+..... +..+.. ....|++++|...+++..+.. +.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 44466788889999999998887632221 111222 337899999999999887764 3356778888899999
Q ss_pred cCCHHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045820 85 LNEQDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144 (225)
Q Consensus 85 ~~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 144 (225)
.|++++|.+.++.. ...|++++|...|.+..+.. +.+...+..+...+.+.|++++|..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999988776 45689999999999987643 2356678889999999999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 145 ~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+++..+.. . .+...+..+...+...|+.++|..+.+.+.+
T Consensus 191 ~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQTY-N------------------QTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHhC-C------------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999988762 2 4556667778888899999999999888765
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.86 E-value=2.1e-06 Score=70.34 Aligned_cols=205 Identities=11% Similarity=0.066 Sum_probs=144.7
Q ss_pred hhcCCCCCChhhcchhhcCcchhh----hHH-HH---HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 045820 17 VDSPSRSPSAAESLDLKENPRSLQ----AQR-FV---DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~----~~~-l~---~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 88 (225)
.....+.|++++|.+.+.++.... ... +. -.+..|+++.|...++.+.+.. +-+......+...|.+.|++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhH
Confidence 444488999999998887754332 111 12 2448899999999999998775 33677888999999999999
Q ss_pred HHHHHHHHHHHhcCCH--------------------------HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 045820 89 DTAVKFFSNHLMVGRV--------------------------EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEA 142 (225)
Q Consensus 89 ~~a~~~~~~~~~~g~~--------------------------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 142 (225)
+.|..++..+.+.+.. +...++++.+.+ ..+.+......+..++.+.|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~-~~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR-KTRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH-HHhCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999998888443322 112222222211 1234677788899999999999999
Q ss_pred HHHHHHHHHcCCCccHH-HHHHHH-----------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 143 MELLNEAIERGVTQNVV-TLIQLL-----------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 143 ~~~~~~m~~~g~~p~~~-t~~~l~-----------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
..++++..+....|... .|..+. +...+..+-|...+.++-..+.+.+++++|.+.|+...+. .|+
T Consensus 283 ~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~ 360 (398)
T PRK10747 283 QQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPD 360 (398)
T ss_pred HHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 99999988854333222 222221 1122333345566888889999999999999999999974 699
Q ss_pred HHHHHHHHHHhhcCC
Q 045820 211 RTSHDMLIKKLDQQP 225 (225)
Q Consensus 211 ~~~~~~ll~~~~~~g 225 (225)
..++..+-..+.+.|
T Consensus 361 ~~~~~~La~~~~~~g 375 (398)
T PRK10747 361 AYDYAWLADALDRLH 375 (398)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999888888887765
No 25
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.85 E-value=5.4e-09 Score=54.34 Aligned_cols=35 Identities=37% Similarity=0.673 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 26
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.84 E-value=6.6e-09 Score=54.00 Aligned_cols=34 Identities=47% Similarity=0.977 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 157 (225)
.+||++|.+|++.|++++|.++|++|++.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999976
No 27
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.82 E-value=7.7e-09 Score=53.47 Aligned_cols=34 Identities=35% Similarity=0.618 Sum_probs=32.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 156 (225)
+.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999986
No 28
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.80 E-value=9.7e-09 Score=53.09 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
+.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999998
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.77 E-value=3e-06 Score=73.32 Aligned_cols=190 Identities=16% Similarity=0.080 Sum_probs=136.4
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
+..+-..+...|++++|+..+.+.... .+..+.. ....|++++|...|+...+.. +-+..+|..+-..+...
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 335556677889999999888763221 1112222 337899999999999887663 33577888999999999
Q ss_pred CCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 86 NEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 86 ~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
|++++|...|++. .+.|++++|...|++..+. .| +...|+.+-..+...|++++|...|
T Consensus 413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999998777 5679999999999998764 34 5678899999999999999999999
Q ss_pred HHHHHcCCCccHHH------HHH---HH----------HHhhc--CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 147 NEAIERGVTQNVVT------LIQ---LL----------QRLEM--GHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 147 ~~m~~~g~~p~~~t------~~~---l~----------~~~~~--~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
++..+..-..+... ++. +. ..++. ...|+ ...+..+...+.+.|++++|..+|++..+
T Consensus 491 ~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 491 DTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99876532211111 110 00 11111 12343 34678888899999999999999988876
Q ss_pred c
Q 045820 205 H 205 (225)
Q Consensus 205 ~ 205 (225)
.
T Consensus 571 l 571 (615)
T TIGR00990 571 L 571 (615)
T ss_pred H
Confidence 4
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.75 E-value=6.8e-06 Score=67.61 Aligned_cols=210 Identities=10% Similarity=0.051 Sum_probs=143.3
Q ss_pred HhhhcCCCCCChhhcchhhcCcchh----h--hHH--HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSL----Q--AQR--FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~--l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
.......+.|++++|.+.+.+.... . ... ..-.+..|+++.|...++.+.+.. +-+..++..+...+.+.|
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHh
Confidence 4456678889999999988774221 1 111 112347999999999999999885 336678899999999999
Q ss_pred CHHHHHHHHHHHHhcCC-----------------HHHH-----HHHHHHHhhCCC---CCCHHhHHHHHHHHHhcCCHHH
Q 045820 87 EQDTAVKFFSNHLMVGR-----------------VEEA-----YEMLMNVKNDGL---KPDVYTYTAIMDGFCKVGRSNE 141 (225)
Q Consensus 87 ~~~~a~~~~~~~~~~g~-----------------~~~a-----~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~~~~ 141 (225)
+++.|.+++..+.+.+- ++.+ .+.+..+.+... +.+...+-.+...+...|+.++
T Consensus 202 d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 99999999988843311 1111 113333332211 1277888999999999999999
Q ss_pred HHHHHHHHHHcCCCccHH---HHHHHH-----------HHhh--cCCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 142 AMELLNEAIERGVTQNVV---TLIQLL-----------QRLE--MGHIPRT---ITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 142 a~~~~~~m~~~g~~p~~~---t~~~l~-----------~~~~--~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
|..++++..+..-..... .+.... +..+ ....|+. ....++-..+.+.|++++|.+.|+..
T Consensus 282 A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 282 AQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 999999998753322211 122111 1111 1223444 45567788889999999999999965
Q ss_pred HhcCCCCCHHHHHHHHHHhhcCC
Q 045820 203 YEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 203 ~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
......|+..++..+...+.+.|
T Consensus 362 ~a~~~~p~~~~~~~La~ll~~~g 384 (409)
T TIGR00540 362 AACKEQLDANDLAMAADAFDQAG 384 (409)
T ss_pred HHhhcCCCHHHHHHHHHHHHHcC
Confidence 55456799999888888877654
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.72 E-value=5.8e-06 Score=74.46 Aligned_cols=186 Identities=13% Similarity=0.028 Sum_probs=125.1
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcch---hhhHHHHH---HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRS---LQAQRFVD---KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~l~~---~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
.+..+-.++.. +++.+|+..+.+-.. .....+.. ....|++++|...|+.+... .|+...+..+..++.+.
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~ 555 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC
Confidence 33444444444 788888875544111 11222211 23789999999999987654 55556677778888999
Q ss_pred CCHHHHHHHHHHH---------------Hhc---CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 86 NEQDTAVKFFSNH---------------LMV---GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 86 ~~~~~a~~~~~~~---------------~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
|+.+.|...++.. ... |++++|...|++..+. .|+...|..+-..+.+.|+.++|+..++
T Consensus 556 Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 556 GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999988665 223 9999999999998864 5678889999999999999999999999
Q ss_pred HHHHcCCCccHHH-HHHHH-------------HHhhc--CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 148 EAIERGVTQNVVT-LIQLL-------------QRLEM--GHIP-RTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 148 ~m~~~g~~p~~~t-~~~l~-------------~~~~~--~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+..+.. |+... ++.+- ..+.. ...| +...+..+-.++...|++++|...+++..+
T Consensus 634 ~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 634 AALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 988763 33222 22111 11111 1122 445666666777777777777777776664
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.71 E-value=2.3e-07 Score=72.33 Aligned_cols=136 Identities=19% Similarity=0.230 Sum_probs=59.9
Q ss_pred HhCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
+.++++++..+++...+. ..+.+...|..+-..+.+.|+.++|..++++. ...|+.+++.+
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 445555555555554322 12334445555555555555555555555444 33455555555
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~ 189 (225)
++....+.. +.|...+..+-.+|...|+.++|...|++..+.. +.|......+...+...
T Consensus 202 ~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-------------------p~d~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 202 ALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-------------------PDDPLWLLAYADALEQA 261 (280)
T ss_dssp HHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-------------------TT-HHHHHHHHHHHT--
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-------------------ccccccccccccccccc
Confidence 555544322 2233344555555555555555555555554432 14788888999999999
Q ss_pred CcHHHHHHHHHHHHh
Q 045820 190 GKIHKALLLLFLMYE 204 (225)
Q Consensus 190 g~~~~a~~~~~~m~~ 204 (225)
|+.++|.++.++..+
T Consensus 262 g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 262 GRKDEALRLRRQALR 276 (280)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 999999999877643
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=6.8e-06 Score=63.38 Aligned_cols=118 Identities=10% Similarity=0.145 Sum_probs=93.9
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------------
Q 045820 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------- 98 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------- 98 (225)
+|-.=++.+-+.+.++|.++|-+|.+.. +-+..+--+|=+.|-+.|.+|.|.++.+.+
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 3445566678899999999999998752 335556667888888899999999998777
Q ss_pred -HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 045820 99 -LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 159 (225)
-..|-+|.|+.+|..+.+.|. .-...---++..|-...+|++|.++-+++.+.+-++..+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~ 177 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV 177 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh
Confidence 668999999999999987552 234466778999999999999999999998887666544
No 34
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.67 E-value=6.1e-07 Score=65.54 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=86.0
Q ss_pred CCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH
Q 045820 120 KPDVYTYTAIMDGFCKV-----GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 194 (225)
..|-.+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.|++..-+|.-.....+.++..-|- .+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp--~Qq~c 121 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYP--RQQEC 121 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCc--HHHHH
Confidence 56888999999999765 678888888999999999999999999998887776555555555444333 45578
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 195 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
|++++++|...|+.||..|+..|++.|.+.+
T Consensus 122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 122 AIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 9999999999999999999999999998864
No 35
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.67 E-value=1.6e-05 Score=62.80 Aligned_cols=173 Identities=16% Similarity=0.106 Sum_probs=114.9
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH------------------------
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV------------------------ 104 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~------------------------ 104 (225)
..|+.+.|..=.+++.+.+ +-+.........+|.+.|++..+..++..+.+.|-+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 165 NRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred hCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 5566666666666665553 335566677777777777777777777666222111
Q ss_pred --HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---------HHh---hc
Q 045820 105 --EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------QRL---EM 170 (225)
Q Consensus 105 --~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~---------~~~---~~ 170 (225)
+.-...++...+ ..+-++..-.+++.-+.+.|+.++|.++..+-.+.+..|...++.--+ +.. -+
T Consensus 244 ~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 244 GSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred cchHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 111112222211 122345555677888899999999999999999998888844333322 111 12
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 171 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
...-+...+.+|=.-|.+++.|.+|.+.|+...+ .+|+..+|+.+-++|.+.|
T Consensus 323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLG 375 (400)
T ss_pred hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcC
Confidence 2233447888999999999999999999996554 6799999999999988765
No 36
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.58 E-value=7.6e-08 Score=48.49 Aligned_cols=31 Identities=42% Similarity=0.942 Sum_probs=29.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
+|||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.57 E-value=5.7e-06 Score=67.79 Aligned_cols=112 Identities=16% Similarity=0.113 Sum_probs=78.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH---------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFC 134 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~ 134 (225)
++.....+..++...|+.+.|..++++. ...++.+++.+..+...+. .| |...+-++-..|.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLM 339 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Confidence 4444555566666666666666666555 3346666666666666543 33 4445666667777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+.+++++|...|+...+. .|+..+|-.+...+.+.|+.++|.+++++-..
T Consensus 340 ~~~~~~~A~~~le~al~~--------------------~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQ--------------------RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HCCCHHHHHHHHHHHHhc--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777777777776654 38999999999999999999999999997643
No 38
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.56 E-value=1.9e-05 Score=68.44 Aligned_cols=152 Identities=15% Similarity=0.043 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDG-TNW-SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+++++|...|+...+.+ ..| ....|+.+-..+...|++++|...|+.. ...|++++|...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46777888887776654 233 3445666677777778888888877665 456788888888
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHH-------------HHhh---cCCC
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN-VVTLIQLL-------------QRLE---MGHI 173 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l~-------------~~~~---~~~~ 173 (225)
|++..+.. +-+...|..+-..|...|++++|...|++..+.. |+ ...+..+- ..++ ....
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 88776542 2246677777778888888888888888777643 32 22222211 1111 1122
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
-+...|+.+-..+...|++++|...|+...+.
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34677888888888899999999999888764
No 39
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.56 E-value=1e-07 Score=47.98 Aligned_cols=31 Identities=32% Similarity=0.601 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcCC
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 207 (225)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
No 40
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.50 E-value=3.3e-06 Score=55.17 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045820 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGT-NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~ 117 (225)
...+.+..++..+++...-.+|..+++.|+ .|+..+|+.++.+.++..--.. .-.+.+-..+.+|..|...
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~--------~ie~kl~~LLtvYqDiL~~ 98 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSE--------DIENKLTNLLTVYQDILSN 98 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccch--------hHHHHHHHHHHHHHHHHHh
Confidence 345567778889999999999999999999 9999999999999987542111 1123456788899999999
Q ss_pred CCCCCHHhHHHHHHHHHhc
Q 045820 118 GLKPDVYTYTAIMDGFCKV 136 (225)
Q Consensus 118 g~~p~~~~~~~ll~~~~~~ 136 (225)
+++|+..+||.++..+.+.
T Consensus 99 ~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 99 KLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred ccCCcHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 41
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.45 E-value=3.3e-05 Score=71.57 Aligned_cols=86 Identities=13% Similarity=-0.000 Sum_probs=45.8
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
+.|+.++|...|++..+.. +-+...+..+...|...|++++|+..++...+.. ..+...+
T Consensus 615 ~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-------------------p~~~~~~ 674 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-------------------NDSLNTQ 674 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-------------------CCChHHH
Confidence 3344444444444444321 1133444444444444444444444444433221 1234456
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+...+...|++++|.++++.+...
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 66677777888888888888888764
No 42
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.45 E-value=7.6e-06 Score=53.52 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC--------cHHHHHH
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGV-TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG--------KIHKALL 197 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g--------~~~~a~~ 197 (225)
..-|..+...+++....-+|..+++.|+ . |++.+|+.++.+.++.. .+-+...
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~l------------------Psv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLt 90 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITL------------------PSVELYNKVLKSIAKRELDSEDIENKLTNLLT 90 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCC------------------CcHHHHHHHHHHHHHccccchhHHHHHHHHHH
Confidence 4456666666999999999999999999 6 66666666666665432 3456788
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 198 LLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 198 ~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
+++.|...+++|+..||+.++..+.+
T Consensus 91 vYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 91 VYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 99999999999999999999998765
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=98.44 E-value=4.6e-05 Score=65.20 Aligned_cols=128 Identities=11% Similarity=0.030 Sum_probs=84.2
Q ss_pred CCCChhhcchhhcCcchh-----hhHHHHH--HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045820 22 RSPSAAESLDLKENPRSL-----QAQRFVD--KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94 (225)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~-----~~~~l~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 94 (225)
..+++++|...+++.... .....+. ....|++++|...|++..+.+ +-+...|..+-..+...|++++|...
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445577777776653221 1212222 237789999999998887764 33456677788888888888888887
Q ss_pred HHHH------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 95 FSNH------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 95 ~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
++.. ...|++++|...+.+..+.. .| +...+..+-.++...|+.++|...+.++..
T Consensus 395 ~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 395 INECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 7665 34577777777777765432 23 334456666677777888888887776544
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=98.44 E-value=5.5e-05 Score=64.70 Aligned_cols=132 Identities=14% Similarity=0.036 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLM 112 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~ 112 (225)
+++++|...+++..+.. +-+...|..+-..+...|++++|...|++. ...|++++|...++
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45789999999887764 336677888878888899999999998776 66799999999999
Q ss_pred HHhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHccC
Q 045820 113 NVKNDGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP-RTITFNNVIQALCGVG 190 (225)
Q Consensus 113 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p-~~~~~~~li~~~~~~g 190 (225)
+..+. .|+ ...+...+..+...|++++|...+.+..+..- | +...+..+-.++...|
T Consensus 397 ~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-------------------p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 397 ECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL-------------------QDNPILLSMQVMFLSLKG 455 (553)
T ss_pred HHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-------------------ccCHHHHHHHHHHHHhCC
Confidence 98764 343 22333445556678889999999888776532 3 2334566667777788
Q ss_pred cHHHHHHHHHHHHh
Q 045820 191 KIHKALLLLFLMYE 204 (225)
Q Consensus 191 ~~~~a~~~~~~m~~ 204 (225)
+.++|...++++..
T Consensus 456 ~~~eA~~~~~~~~~ 469 (553)
T PRK12370 456 KHELARKLTKEIST 469 (553)
T ss_pred CHHHHHHHHHHhhh
Confidence 88888888877654
No 45
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.42 E-value=5e-05 Score=68.62 Aligned_cols=97 Identities=10% Similarity=0.011 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLM 112 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~ 112 (225)
|++++|...+++..+. .|+...|..+-.++.+.|+.++|...|++. ...|+.++|...|+
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444444444444433 233444444444444445555544444433 33444445544444
Q ss_pred HHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 113 NVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 113 ~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
+..+. .| +...+..+-.++.+.|++++|+..+++..+
T Consensus 668 ~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 668 RAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44432 22 333444444444455555555554444443
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=2.7e-05 Score=62.92 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHH-ccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 172 HIPRTITFNNVIQALC-GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 172 ~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
+.|+..-|..+|..|. +.|++.+|++++++..+ .++-|......|++.+..-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccc
Confidence 5678888877775554 46888888888887654 4556777777777666543
No 47
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.40 E-value=1.4e-05 Score=66.80 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=117.6
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
..|+++.|++.+++-.+. .|+ ...||.|-+++-..|++++|.+.|... ...|.++.|..
T Consensus 298 eqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred ccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 788999999999887765 444 456999999999999999999988766 56688888888
Q ss_pred HHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH--------HHHHH------HHHhhcC--C
Q 045820 110 MLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--------TLIQL------LQRLEMG--H 172 (225)
Q Consensus 110 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--------t~~~l------~~~~~~~--~ 172 (225)
+|....+ +.|.- ..+|.+-..|-+.|++++|...+++..+ ++|+-. ||.-+ ++++.+. +
T Consensus 376 ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 376 LYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 8887765 45543 4588888888888999999888888765 344321 22211 1333332 2
Q ss_pred CCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH-HHHHHHHH
Q 045820 173 IPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR-TSHDMLIK 219 (225)
Q Consensus 173 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~ 219 (225)
.|. ....+.|-+.|-..|++.+|++-+++..+ ++||. ..|..++.
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh 498 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLH 498 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHH
Confidence 343 35688899999999999999999999875 56764 34444443
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.39 E-value=7.9e-05 Score=69.12 Aligned_cols=182 Identities=11% Similarity=0.033 Sum_probs=123.6
Q ss_pred hhhcCCCCCChhhcchhhcCcchhh-------hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 045820 16 LVDSPSRSPSAAESLDLKENPRSLQ-------AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 88 (225)
+...+...|++++|++.+++..... +.......+.|++++|...|++..+.. +-+...+..+...+...++.
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~ 545 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRD 545 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCH
Confidence 3445667888888888887733221 111112347899999999998887642 22344444444455667778
Q ss_pred HHHHHHHHHH----------------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHH
Q 045820 89 DTAVKFFSNH----------------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN 140 (225)
Q Consensus 89 ~~a~~~~~~~----------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 140 (225)
++|...++.+ ...|+.++|..+++. .+.+...+..+-..+.+.|+++
T Consensus 546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHH
Confidence 7777766542 456788888888762 2345566777888889999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC-HHHHHHHHH
Q 045820 141 EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS-RTSHDMLIK 219 (225)
Q Consensus 141 ~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 219 (225)
+|...|++..+..- .+...+..+...|...|+.++|.+.++...+. .|+ ..++..+-.
T Consensus 621 ~A~~~y~~al~~~P-------------------~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~ 679 (1157)
T PRK11447 621 AARAAYQRVLTREP-------------------GNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVAL 679 (1157)
T ss_pred HHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHH
Confidence 99999998887531 45778899999999999999999999987753 343 344444545
Q ss_pred HhhcC
Q 045820 220 KLDQQ 224 (225)
Q Consensus 220 ~~~~~ 224 (225)
++.+.
T Consensus 680 ~~~~~ 684 (1157)
T PRK11447 680 AWAAL 684 (1157)
T ss_pred HHHhC
Confidence 44443
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.39 E-value=0.00012 Score=55.44 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=103.1
Q ss_pred hhhcCCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCC-CC-ChhhHHHHHHHHHhcCCHHHHHH
Q 045820 16 LVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGT-NW-SVSDFNDLLMALVMLNEQDTAVK 93 (225)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~-~~-~~~~~~~li~~~~~~~~~~~a~~ 93 (225)
++.+|+...+.+.. ..-......-+......+..|+++.|...|++..+..- .| ...++..+-.++.+.|+++.|..
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 13 LLAGCSSKKKKEAD-PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHhhccCCcccccC-CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34455555333333 23333333334444445577777777777777655421 11 11345556666767777777777
Q ss_pred HHHHH---------------------H--------hcCCHHHHHHHHHHHhhCCCCCCH-HhH-----------------
Q 045820 94 FFSNH---------------------L--------MVGRVEEAYEMLMNVKNDGLKPDV-YTY----------------- 126 (225)
Q Consensus 94 ~~~~~---------------------~--------~~g~~~~a~~~~~~m~~~g~~p~~-~~~----------------- 126 (225)
.++.+ . ..|+.++|.+.|++..+. .|+. ..+
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 76665 0 115566777777776653 2321 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
-.+-..|.+.|++++|...+.+..+..-. -......+..+..++.+.|+.++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPD----------------TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCC----------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 13445677889999999999888765310 0023568889999999999999999999988764
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.38 E-value=5.7e-05 Score=67.07 Aligned_cols=173 Identities=10% Similarity=0.001 Sum_probs=112.0
Q ss_pred cCCCCCChhhcchhhcCcchhhh------HH-HH-HHHHhCCHHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCC
Q 045820 19 SPSRSPSAAESLDLKENPRSLQA------QR-FV-DKIKASPLKERIDIFNSIKKDGTNW---SVSDFNDLLMALVMLNE 87 (225)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~------~~-l~-~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~~~ 87 (225)
.+...|++++|+..++++....- .. +. ..+..|++++|+..|+++.+..-.. ....+..+..++.+.|+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 33455788888887777554421 01 11 2347888888888888876542111 13445666777778888
Q ss_pred HHHHHHHHHHH---------------------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 045820 88 QDTAVKFFSNH---------------------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134 (225)
Q Consensus 88 ~~~a~~~~~~~---------------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 134 (225)
+++|..+++.+ ...|+.++|.++++++.... +-+...+..+...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 88887776655 33456677777777765531 224556666777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
+.|+.++|+..+++..+.. || ...+-.....+...|++++|..+++++++. .|+...
T Consensus 405 ~~g~~~~A~~~l~~al~l~--------------------Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~ 462 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLE--------------------PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPG 462 (765)
T ss_pred hcCCHHHHHHHHHHHHhhC--------------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHH
Confidence 7777777777777666542 43 556667777888899999999999999873 354443
Q ss_pred H
Q 045820 214 H 214 (225)
Q Consensus 214 ~ 214 (225)
.
T Consensus 463 ~ 463 (765)
T PRK10049 463 V 463 (765)
T ss_pred H
Confidence 3
No 51
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.37 E-value=6.1e-05 Score=66.77 Aligned_cols=77 Identities=6% Similarity=-0.022 Sum_probs=49.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhc-----CCCCCHHHHHHHHHHH
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEM-----GHIPRTITFNNVIQAL 186 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~-----~~~p~~~~~~~li~~~ 186 (225)
.+-++.+.|+..++..-++.++..|.+....+--.+. ..... ...++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 4556667777777777777777666542222222222 11111 1123455568899999
Q ss_pred HccCcHHHHHHHHHHHHhc
Q 045820 187 CGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~~ 205 (225)
...+++++|..+++.+.+.
T Consensus 378 ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhcccHHHHHHHHHHHHhc
Confidence 9999999999999999873
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.35 E-value=0.00015 Score=64.36 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=116.7
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHH------------------
Q 045820 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSV--SDFNDLLMALVMLNEQDTAVKFFSNH------------------ 98 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~------------------ 98 (225)
..+...+...+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.+.|...+++.
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 4466777788999999999999988766 4443 234 8888888889999999988776
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|.++|+++.+.. +-+...+..+...|...++.++|+..+++..+.. |+...
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------------------p~~~~ 171 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--------------------PTVQN 171 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--------------------cchHH
Confidence 35699999999999998753 2245666677888999999999999999887653 56555
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
+-.++..+...++..+|++.++++.+.. +-+...+..++.++.+.
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRN 216 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 6444444444566656899999988753 22455556665555544
No 53
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.30 E-value=1.2e-05 Score=58.82 Aligned_cols=112 Identities=14% Similarity=0.166 Sum_probs=84.5
Q ss_pred hhhhHHHHHHH------HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--HhcCCHHHHHH
Q 045820 38 SLQAQRFVDKI------KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--LMVGRVEEAYE 109 (225)
Q Consensus 38 ~~~~~~l~~~~------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--~~~g~~~~a~~ 109 (225)
..++..++..+ +.|+++-....+..|.+-|+.-|..+|+.||+.+=+ |.+- -..+|+.+ ---.+-+-|.+
T Consensus 47 K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 47 KATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred HHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccCcHHHHHHHH
Confidence 33444455544 678888888999999999999999999999999976 4332 33344444 23456688999
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGR-SNEAMELLNEAIE 151 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~ 151 (225)
++++|+..|+.||..|+..+++.|++.+. ..+..++.-.|.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986 3444555555544
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.29 E-value=0.00018 Score=55.76 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=82.9
Q ss_pred HhhhcCCCCCChhhcchhhcC----cchhhhHH------HH-HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKEN----PRSLQAQR------FV-DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~------l~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
.|=+-|-+.|..++|+++-.. |+-..-.. +- +++++|-++.|..+|..+.+.|. .-....-.|+..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHH
Confidence 444556677777777765443 22111111 11 23477888888888888776542 23445666777777
Q ss_pred hcCCHHHHHHHHHHH---------------------------------------------------------HhcCCHHH
Q 045820 84 MLNEQDTAVKFFSNH---------------------------------------------------------LMVGRVEE 106 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~---------------------------------------------------------~~~g~~~~ 106 (225)
...+|++|.++-+++ ...|+++.
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence 777777777765544 44566666
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 107 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
|.+.++...+.+..--..+-..+..+|...|+.++....+..+.+.
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666666665543333445566666666666666666666666554
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.27 E-value=0.00021 Score=59.69 Aligned_cols=210 Identities=15% Similarity=0.124 Sum_probs=138.2
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh----------hhHHHHH-----HHHhCCHHHHHHHHHHHHhc-----C-CC
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL----------QAQRFVD-----KIKASPLKERIDIFNSIKKD-----G-TN 69 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~l~~-----~~~~~~~~~a~~~~~~m~~~-----g-~~ 69 (225)
.+...|...|...|+++.|..++.+--.. .+..+++ ....+.+++|..+|+.+..- | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45557888999999999999988773322 1222222 12678999999999887432 2 12
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------------------HhcCCHHHHHHHHHHHhhC---CC
Q 045820 70 W-SVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------------LMVGRVEEAYEMLMNVKND---GL 119 (225)
Q Consensus 70 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------------~~~g~~~~a~~~~~~m~~~---g~ 119 (225)
| -..+++.|-.+|.+.|++++|...++.. ...+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 2344666777899999999888877555 6678888888888765431 12
Q ss_pred CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCccH---HHHHHHH-----------------------
Q 045820 120 KPD----VYTYTAIMDGFCKVGRSNEAMELLNEAIERG----VTQNV---VTLIQLL----------------------- 165 (225)
Q Consensus 120 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~p~~---~t~~~l~----------------------- 165 (225)
.++ ..+++.+-..|-+.|++++|++++++....- -.-+. ..++.+-
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 3568999999999999999999998876431 11111 1222221
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh------cCCCCCHHHHHHHHHH
Q 045820 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE------HGKIPSRTSHDMLIKK 220 (225)
Q Consensus 166 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------~g~~p~~~~~~~ll~~ 220 (225)
..+..+..-...+|..|...|...|++++|+++.+.... ....|+.........-
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLAD 500 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhH
Confidence 111112222345899999999999999999998877652 1355666655554433
No 56
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.25 E-value=3.8e-05 Score=62.66 Aligned_cols=130 Identities=15% Similarity=0.234 Sum_probs=99.4
Q ss_pred HHHHHHh---cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHhHHHHHHHH
Q 045820 59 IFNSIKK---DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND--GLKPDVYTYTAIMDGF 133 (225)
Q Consensus 59 ~~~~m~~---~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~ 133 (225)
++..|.+ .+.+.+......+++.+....+ ++.+..++.+.... ....-..|..++++.|
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~----------------~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~ 113 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDD----------------LDEVEDVLYKFRHSPNCSYLLPSTHHALVRQC 113 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhH----------------HHHHHHHHHHHHcCcccccccCccHHHHHHHH
Confidence 5555533 3556677778888887754444 45555555555543 2222334557999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 134 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
.+.|..+++..++..=...|+- ||..+||.||..+.+.|++..|.++..+|..+....+..|
T Consensus 114 l~~~~~~~~l~~L~n~~~yGiF------------------~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t 175 (429)
T PF10037_consen 114 LELGAEDELLELLKNRLQYGIF------------------PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPST 175 (429)
T ss_pred HhcCCHHHHHHHHhChhhcccC------------------CChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchH
Confidence 9999999999999999999988 8999999999999999999999999999998888788888
Q ss_pred HHHHHHHhh
Q 045820 214 HDMLIKKLD 222 (225)
Q Consensus 214 ~~~ll~~~~ 222 (225)
+.--+.+|.
T Consensus 176 ~~L~l~~~~ 184 (429)
T PF10037_consen 176 QALALYSCY 184 (429)
T ss_pred HHHHHHHHH
Confidence 777666654
No 57
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.21 E-value=0.00058 Score=60.82 Aligned_cols=143 Identities=13% Similarity=-0.012 Sum_probs=106.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHH----------------------HhcCC
Q 045820 47 KIKASPLKERIDIFNSIKKDGTN-WSVSDFNDLLMALVMLNEQDTAVKFFSNH----------------------LMVGR 103 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------------------~~~g~ 103 (225)
.+..+++++|+..|+.+.+.+-+ |+. .-..+-.+|...|++++|...|+.+ ...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 35778999999999999887632 332 1222567898899999999888766 24478
Q ss_pred HHHHHHHHHHHhhCCC-----------CCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhh
Q 045820 104 VEEAYEMLMNVKNDGL-----------KPD---VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLE 169 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~-----------~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~ 169 (225)
+++|..+++.+.+... .|+ ...+......+...|+.++|+.+++++....-
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P--------------- 390 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP--------------- 390 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------
Confidence 8888888888876421 122 22445667788888899999999888876532
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 170 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
-+...+..+...+...|++++|++.+++..+. .|+.
T Consensus 391 ----~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~ 426 (765)
T PRK10049 391 ----GNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRN 426 (765)
T ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCC
Confidence 45678889999999999999999999998874 4664
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.20 E-value=0.00018 Score=59.24 Aligned_cols=32 Identities=9% Similarity=-0.084 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 172 HIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 172 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
..||...+..+...+.+.|+.++|.+++++-.
T Consensus 366 ~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 366 EQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34899999999999999999999999999854
No 59
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.19 E-value=4.4e-05 Score=59.71 Aligned_cols=131 Identities=19% Similarity=0.198 Sum_probs=85.7
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------Hh-cCCHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LM-VGRVEEAY 108 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~-~g~~~~a~ 108 (225)
..|++++|++++..- -+.......+..|.+.+++|.|.+.++.| .. .+.+.+|.
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 445566665554321 24445555556666666666666666555 11 24689999
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~ 188 (225)
.+|+++.+. ..++..+.|.+..++...|++++|+.++.+..+..- -|..+...+|-+...
T Consensus 188 y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-------------------~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 188 YIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-------------------NDPDTLANLIVCSLH 247 (290)
T ss_dssp HHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-------------------CCHHHHHHHHHHHHH
Confidence 999998764 467889999999999999999999999998764332 344566666777777
Q ss_pred cCcH-HHHHHHHHHHHhc
Q 045820 189 VGKI-HKALLLLFLMYEH 205 (225)
Q Consensus 189 ~g~~-~~a~~~~~~m~~~ 205 (225)
.|+. +.+.+++.++...
T Consensus 248 ~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 248 LGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp TT-TCHHHHHHHHHCHHH
T ss_pred hCCChhHHHHHHHHHHHh
Confidence 7766 6677888887753
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.16 E-value=0.002 Score=50.69 Aligned_cols=164 Identities=16% Similarity=0.085 Sum_probs=114.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+.|+.++|...|++..+.. +-+...|+.+-..+...|+++.|...|+.. ...|++++|.+.
T Consensus 76 ~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 76 SLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7899999999999887764 336788999999999999999999998777 557999999999
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH-H-----------HHhhcCCCC----
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL-L-----------QRLEMGHIP---- 174 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-~-----------~~~~~~~~p---- 174 (225)
|++..+. .|+..........+...++.++|...|.+..... .|+...+... + .....++.-
T Consensus 155 ~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l 231 (296)
T PRK11189 155 LLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGWNIVEFYLGKISEETLMERLKAGATDNTEL 231 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHH
Confidence 9998764 4543222222223455678999999997755332 2322222111 1 111112111
Q ss_pred ---CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 175 ---RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 175 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
....|..+-..+.+.|+.++|...|++..+.. .||..-+...
T Consensus 232 ~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~ 276 (296)
T PRK11189 232 AERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYA 276 (296)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHH
Confidence 23578889999999999999999999998754 3465555443
No 61
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=0.00017 Score=60.55 Aligned_cols=146 Identities=21% Similarity=0.177 Sum_probs=92.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHH--
Q 045820 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTA-- 128 (225)
Q Consensus 69 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-- 128 (225)
+-++.+|.++=+.|.-+++.+.|.+.|+.. .....+|.|...|.... ..|...||+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwY 493 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWY 493 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHH
Confidence 446788999999999999999999999887 55667778887777655 567777766
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-------------HHhhcCCCC---CHHHHHHHHHHHHccCc
Q 045820 129 -IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-------------QRLEMGHIP---RTITFNNVIQALCGVGK 191 (225)
Q Consensus 129 -ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-------------~~~~~~~~p---~~~~~~~li~~~~~~g~ 191 (225)
+-..|.|.++++.|+.-|.+..+.+-. +.+..+.+- ++++.-+.. |.-.----...+...++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 445678888999999888887765432 222111111 122222211 22222233344556677
Q ss_pred HHHHHHHHHHHHhcCCCCCHHH-HHHHHHHh
Q 045820 192 IHKALLLLFLMYEHGKIPSRTS-HDMLIKKL 221 (225)
Q Consensus 192 ~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~ 221 (225)
.++|...++++++ +.|+..+ |..+-+.|
T Consensus 573 ~~eal~~LEeLk~--~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 573 YVEALQELEELKE--LVPQESSVFALLGKIY 601 (638)
T ss_pred hHHHHHHHHHHHH--hCcchHHHHHHHHHHH
Confidence 8888888888876 4565544 33333333
No 62
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00059 Score=55.41 Aligned_cols=204 Identities=11% Similarity=0.081 Sum_probs=128.8
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhhhH------HHHHHH--HhCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHh
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQAQ------RFVDKI--KASPLKERIDIFNSIKKDGT--NWSVSDFNDLLMALVM 84 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~l~~~~--~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~ 84 (225)
++..++.+-.+.+++++-.......++. ..+..+ ...+++.|..+|++++++.. --|..+|+.++..--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 4444555555556665554443333221 122222 67899999999999988721 1277888888766544
Q ss_pred cCCHH-HHHHHHHHH--------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 85 LNEQD-TAVKFFSNH--------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 85 ~~~~~-~a~~~~~~~--------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
+..+. .|..+++-- +-.++.++|...|.+..+- .| ....|+.|-.-|..-.+...|..-++.
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 43332 233332111 5567788888888887763 34 456788888888888888888888888
Q ss_pred HHHcCCCccH-------HHHHHHH--------HHhhcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 149 AIERGVTQNV-------VTLIQLL--------QRLEMGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 149 m~~~g~~p~~-------~t~~~l~--------~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
..+..-. |- .+|-++= -.....++ -|...|.+|-.+|.+.++.++|++-|+.....|-. +..
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 7654211 11 1222221 11122333 47889999999999999999999999998876633 567
Q ss_pred HHHHHHHHhh
Q 045820 213 SHDMLIKKLD 222 (225)
Q Consensus 213 ~~~~ll~~~~ 222 (225)
.+..|-+.|-
T Consensus 468 ~l~~LakLye 477 (559)
T KOG1155|consen 468 ALVRLAKLYE 477 (559)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.10 E-value=0.00086 Score=56.55 Aligned_cols=186 Identities=14% Similarity=0.151 Sum_probs=109.3
Q ss_pred hcCCCCCChhhcchhhcCcchh-----hhHHHHH--HHHhCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHhc----
Q 045820 18 DSPSRSPSAAESLDLKENPRSL-----QAQRFVD--KIKASPLKERIDIFNSIKKDGTNWSVSDFN-DLLMALVML---- 85 (225)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~l~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~---- 85 (225)
..+...|++++|++.+..-... ++..... .++.|+.++|..+|..+.+. .|+...|- .+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 4457789999999999773332 3332222 34889999999999999988 45555544 444444222
Q ss_pred -CCHHHHHHHHHHH--------------------------------------------------HhcCCHHHHHHHHHHH
Q 045820 86 -NEQDTAVKFFSNH--------------------------------------------------LMVGRVEEAYEMLMNV 114 (225)
Q Consensus 86 -~~~~~a~~~~~~~--------------------------------------------------~~~g~~~~a~~~~~~m 114 (225)
.+.+...++|+++ .......-..+++...
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 3567777888777 1122233333444443
Q ss_pred hhC----C----------CCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH-HHHH--H----------
Q 045820 115 KND----G----------LKPDVYTY--TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVT-LIQL--L---------- 165 (225)
Q Consensus 115 ~~~----g----------~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~l--~---------- 165 (225)
... | -.|+...| .-+-..|-..|++++|+..+++.++.. |+..- |..- |
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHH
Confidence 321 1 13444344 555667889999999999999888753 43221 1111 1
Q ss_pred -HHhh--cCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCC
Q 045820 166 -QRLE--MGHI-PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207 (225)
Q Consensus 166 -~~~~--~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 207 (225)
+..+ .... -|...=+--...+.++|++++|.+++....+.+.
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 1111 1111 2333444445555677777777777777766554
No 64
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=9.3e-05 Score=62.84 Aligned_cols=189 Identities=12% Similarity=0.085 Sum_probs=135.5
Q ss_pred CCCC-chhhHhhhcCCCCCChhhcchhhcCcchhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 7 NSPT-PFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 7 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.||. .....+...+...|...+|+..++++.- +.+.+.|+ ..|+.++|..+..+..+. +|++..|..+-+...+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem--w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM--WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH--HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3444 3344777788899999999998887654 55555554 788999999998877763 8899999999998887
Q ss_pred cCCHHHHHHHHHHH----------------------------------------------HhcCCHHHHHHHHHHHhhCC
Q 045820 85 LNEQDTAVKFFSNH----------------------------------------------LMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 85 ~~~~~~a~~~~~~~----------------------------------------------~~~g~~~~a~~~~~~m~~~g 118 (225)
..-+++|.++++.. .+.+++..|.+.|.....
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt-- 547 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT-- 547 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--
Confidence 77788888887665 445555666666655553
Q ss_pred CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 045820 119 LKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197 (225)
Q Consensus 119 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 197 (225)
..||- ..||.+-.+|.+.++-.+|...+.+..+... -+...|...+..-.+.|.+++|++
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-------------------~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-------------------QHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-------------------CCCeeeechhhhhhhcccHHHHHH
Confidence 35644 4588888888888888888888888777663 355677777888888999999999
Q ss_pred HHHHHHhc-CCCCCHHHHHHHHHH
Q 045820 198 LLFLMYEH-GKIPSRTSHDMLIKK 220 (225)
Q Consensus 198 ~~~~m~~~-g~~p~~~~~~~ll~~ 220 (225)
.+..+.+- .-.-|...-..++..
T Consensus 609 A~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 609 AYHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHHHHhhhhcccchhhHHHHHH
Confidence 98888652 111255555554443
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.07 E-value=0.0023 Score=50.99 Aligned_cols=163 Identities=11% Similarity=0.068 Sum_probs=129.4
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCCHHHHH
Q 045820 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGRVEEAY 108 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~~~~a~ 108 (225)
+-.|++.+|.++..+-.+++-. ....|-.-..+--.-||.+.+-..+.+. ...|+.+.|.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 3679999999998886666544 4445666667777779999999888777 6678889999
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH-------HHHHHHHH--------------
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-------TLIQLLQR-------------- 167 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------t~~~l~~~-------------- 167 (225)
.-.++..+.+ +-.+........+|.+.|++.....+...|.+.|.--|.. +|+.+++-
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 8888888764 3367789999999999999999999999999999766554 77777721
Q ss_pred --hhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 168 --LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 168 --~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
.....+-+...-.+++.-+.+.|+.++|.++.++-.+++.-|+..
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~ 299 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC 299 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH
Confidence 122344567778889999999999999999999999988877743
No 66
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.05 E-value=8.5e-05 Score=60.65 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=84.6
Q ss_pred hhHHHHHHH-HhCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 045820 40 QAQRFVDKI-KASPLKERIDIFNSIKKD--GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 40 ~~~~l~~~~-~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~ 116 (225)
.+..+++.+ ...+++.+..++-..+.. ....-..|.+++|..|.+.|.. +.+..++..=..
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~----------------~~~l~~L~n~~~ 131 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAE----------------DELLELLKNRLQ 131 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCH----------------HHHHHHHhChhh
Confidence 344566666 456688888888777765 3444455667999999665554 555555555567
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
.|+-||.++||.+|+.+.+.|++..|.++...|...+...+..|+..-+
T Consensus 132 yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 132 YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 8999999999999999999999999999999999888887877776665
No 67
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.05 E-value=0.00081 Score=56.71 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=72.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHhhcC-----
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-TQNVVTLIQLLQRLEMG----- 171 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~l~~~~~~~----- 171 (225)
...|+++.|...|++..+. .|+ ...||.+-.|+-..|++.+|++++.+.....- -+|+..--.-+.+....
T Consensus 297 yeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred eccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHH
Confidence 5568888888888888763 564 45799999999999999999999988776432 12221111112111111
Q ss_pred --------CCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 172 --------HIPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 172 --------~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
+-|. ....|.|-.-|-+.|+.++|+.-+++..+ +.|+.
T Consensus 375 ~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f 421 (966)
T KOG4626|consen 375 RLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF 421 (966)
T ss_pred HHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH
Confidence 1122 23567778888888888888888888775 56654
No 68
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.96 E-value=0.00018 Score=62.93 Aligned_cols=105 Identities=14% Similarity=0.112 Sum_probs=80.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
..+..++|+++|.+..+.. +-|...-|-+-..++..|++++|..||.+.++... -+..+|
T Consensus 624 ~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-------------------~~~dv~ 683 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-------------------DFEDVW 683 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-------------------hCCcee
Confidence 5577899999999888753 44888889999999999999999999999998764 233567
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhcC
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~ 224 (225)
-.+-++|+..|++..|+++|+...+. +-.-+......|-+++.+.
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 77777888888888888888776653 4455666677777666554
No 69
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.95 E-value=0.00083 Score=46.93 Aligned_cols=95 Identities=9% Similarity=-0.073 Sum_probs=76.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|...|....... +.+...|..+-.++.+.|++++|...|++..+..- .+...
T Consensus 35 ~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-------------------~~~~a 94 (144)
T PRK15359 35 WQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-------------------SHPEP 94 (144)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------------------CCcHH
Confidence 45577777777777776542 34778899999999999999999999999997642 57788
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHH
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 215 (225)
+..+-.++...|+.++|...|+...+. .|+...+.
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 999999999999999999999999874 46554443
No 70
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.91 E-value=0.00031 Score=53.63 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=83.1
Q ss_pred CCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH
Q 045820 120 KPDVYTYTAIMDGFCKV-----GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 194 (225)
+-|-.+|-+.+..|... ++++-....+..|++.|+.-|..+|+.|+...-+|.-.-...|..+.-.|=+.. +=
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ--~C 141 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQ--NC 141 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhh--hH
Confidence 34666677777777554 567778888899999999999999999998887776555566666666665544 45
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 195 ALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 195 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
+++++++|...|+.||-.+=..|+.+|.|+|
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 7899999999999999999999999999875
No 71
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.89 E-value=9.3e-05 Score=57.88 Aligned_cols=185 Identities=14% Similarity=0.064 Sum_probs=105.4
Q ss_pred HhhhcCCCCCChhhcchhhcC---cchhhhHHHHHHHHh-CCHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHhcCCHH
Q 045820 15 LLVDSPSRSPSAAESLDLKEN---PRSLQAQRFVDKIKA-SPLKERIDIFNSIKKDGTNWSVSDFND-LLMALVMLNEQD 89 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~~~~~~~ 89 (225)
.+..++...|+++.++.-... +.......+...+.. .+-+.++.-+++.......++..++.. .-..+...|+++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 555666666776665544432 222223334444433 334444444444433333322223322 223455568888
Q ss_pred HHHHHHHHH-------------HhcCCHHHHHHHHHHHhhCCCCCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 90 TAVKFFSNH-------------LMVGRVEEAYEMLMNVKNDGLKPDVYT---YTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 90 ~a~~~~~~~-------------~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.|.+++..- .+.++++.|.+.++.|.+.. .|... ..+.++.+...+.+++|..+|+++...
T Consensus 120 ~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~- 196 (290)
T PF04733_consen 120 EALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK- 196 (290)
T ss_dssp HHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-
T ss_pred HHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-
Confidence 777664332 77899999999999998642 33322 333344443345789999999997654
Q ss_pred CCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 154 VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 154 ~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
.. ++..+.|.+..++...|++++|.+++.+..+.. +-|..|...++-+.
T Consensus 197 ~~------------------~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 197 FG------------------STPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCS 245 (290)
T ss_dssp S--------------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHH
T ss_pred cC------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHH
Confidence 22 778889999999999999999999999987543 22444555555443
No 72
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.89 E-value=0.00016 Score=49.18 Aligned_cols=97 Identities=12% Similarity=0.052 Sum_probs=73.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
|..++.++|-++++.|+.+....+++.. .|+.++..--..- --......|+..+..+++.+|+.+|++..|.++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~~~~~-~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKKKEGD-YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCccccCc-cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4678899999999999999999998643 3433222100000 112234569999999999999999999999999999
Q ss_pred HHh-cCCCCCHHHHHHHHHHh
Q 045820 202 MYE-HGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 202 m~~-~g~~p~~~~~~~ll~~~ 221 (225)
..+ .++..+..+|..|++-.
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHH
Confidence 986 48998999999998754
No 73
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0021 Score=48.76 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=92.8
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHhhCCCCCCHH
Q 045820 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------LMVGRVEEAYEMLMNVKNDGLKPDVY 124 (225)
Q Consensus 58 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------~~~g~~~~a~~~~~~m~~~g~~p~~~ 124 (225)
++.+.+......-+...-..-...|++.+++++|++..... .+..+.+-|.+.+++|.+- -+..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 44555555544444444444455688889999998876443 6778889999999999862 3445
Q ss_pred hHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 125 TYTAIMDGFC----KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 125 ~~~~ll~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
|.+-+-.+|. ..+.+.+|+-+|++|.+.-. |+..+-|...-++...|++++|..+++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~-------------------~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP-------------------PTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC-------------------CChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 6655555554 44679999999999987432 888888999999999999999999999
Q ss_pred HHHhcC
Q 045820 201 LMYEHG 206 (225)
Q Consensus 201 ~m~~~g 206 (225)
+.....
T Consensus 232 eaL~kd 237 (299)
T KOG3081|consen 232 EALDKD 237 (299)
T ss_pred HHHhcc
Confidence 988653
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00076 Score=52.62 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=84.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+.|-+.+|...|..-.+. .|-+.||-.|-.+|.+..+.+.|+.+|.+- -..++.++|.++
T Consensus 235 rLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~l 312 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQL 312 (478)
T ss_pred HhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHH
Confidence 788888898888776666 567778888999999999999998888655 345788888888
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
|++..+.. +.++....++-.+|.-.++.+-|++.++++.+.|+.
T Consensus 313 Yk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 313 YKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred HHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence 88887642 346777788888888889999999999999999985
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.86 E-value=0.0057 Score=45.47 Aligned_cols=112 Identities=17% Similarity=0.049 Sum_probs=90.7
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcC
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVG 102 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g 102 (225)
...-+..+..|+...|..-++.-.++. +-+..+|..+-..|-+.|+.+.|.+-|+.. +..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 344556779999999999999888774 336778999999999999999999999777 8889
Q ss_pred CHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 103 RVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+++|...|++....-.-+ -..||..+--+..+.|+.+.|+..|.+-.+..
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 9999999999987632222 34578787778889999999999999887654
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.0045 Score=48.49 Aligned_cols=187 Identities=8% Similarity=-0.045 Sum_probs=137.1
Q ss_pred HhhhcCCCCCChhhcchhhcCc-----chhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHhcCC
Q 045820 15 LLVDSPSRSPSAAESLDLKENP-----RSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDF-NDLLMALVMLNE 87 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~~~ 87 (225)
.+-++|.|-|.+.+|.+.+++- ...++-.+-..+ +-.++..|+.+|.+-.+. .|-.+|| .-+-..+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHh
Confidence 6788999999999999877662 233344444444 789999999999887765 4555554 445566667789
Q ss_pred HHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 88 QDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 88 ~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
.+.|.++|+.. .-.++.+-|+..|.++.+.|+ -+...|+.+--+|.-.+.++-++-.|.+.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 99999999888 335889999999999999996 46667888777888888999999999888
Q ss_pred HHcCCCccHH---HHHHHH------------HHh---hcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 150 IERGVTQNVV---TLIQLL------------QRL---EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 150 ~~~g~~p~~~---t~~~l~------------~~~---~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
...-..|+.. =||.-. +.+ -..-.-+.+.+|.|----.+.|++++|..+++....
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7765544332 122211 211 122224567888888888899999999999988764
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.80 E-value=0.0051 Score=45.42 Aligned_cols=131 Identities=8% Similarity=0.113 Sum_probs=90.4
Q ss_pred hCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHH
Q 045820 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTA 128 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ 128 (225)
.++.+++...++...+.. +.|...|..+-..|...|+ +++|...|++..+. .| +...+..
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~----------------~~~A~~a~~~Al~l--~P~~~~~~~~ 112 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND----------------YDNALLAYRQALQL--RGENAELYAA 112 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 445566666666555443 4477778888778855555 45555555555543 34 5666777
Q ss_pred HHHH-HHhcCC--HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 129 IMDG-FCKVGR--SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 129 ll~~-~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
+-.+ +...|+ .++|..++++..+..- -+...+..+-..+.+.|++++|...|+.+.+.
T Consensus 113 lA~aL~~~~g~~~~~~A~~~l~~al~~dP-------------------~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 113 LATVLYYQAGQHMTPQTREMIDKALALDA-------------------NEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCC-------------------CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7666 467676 5999999999998753 36778888889999999999999999999874
Q ss_pred CCCCCHHHHHHHHHH
Q 045820 206 GKIPSRTSHDMLIKK 220 (225)
Q Consensus 206 g~~p~~~~~~~ll~~ 220 (225)
..|+..-+..+ .+
T Consensus 174 -~~~~~~r~~~i-~~ 186 (198)
T PRK10370 174 -NSPRVNRTQLV-ES 186 (198)
T ss_pred -CCCCccHHHHH-HH
Confidence 35565554444 44
No 78
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0049 Score=46.79 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=80.2
Q ss_pred cCCCCCChhhcchhhcCcchhhhHHHHHH--HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 19 SPSRSPSAAESLDLKENPRSLQAQRFVDK--IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~l~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 96 (225)
.|.+.|++++|++............+-.. ++..+++.|...+++|.+-. +..|.+-|-.+|.+.-
T Consensus 117 i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la---------- 183 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLA---------- 183 (299)
T ss_pred HhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHh----------
Confidence 35666666666666665333333333332 25666666666666665432 4445555555554431
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 97 NHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 97 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
...+.+.+|+-+|++|-++ ..|+..+-|-...++...|++++|+.++++.....-
T Consensus 184 --~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 184 --TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred --ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 3345688999999999764 578999999999999999999999999999987654
No 79
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.73 E-value=0.0024 Score=51.97 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHH
Q 045820 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~ 180 (225)
.++-.+|.+++++.... .+-|....+.-...+.+.++++.|+.+.+++.+..- -+..+|.
T Consensus 213 ~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP-------------------~~f~~W~ 272 (395)
T PF09295_consen 213 MNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSP-------------------SEFETWY 272 (395)
T ss_pred cCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-------------------hhHHHHH
Confidence 34555666666655542 123555666666777888888888888888887541 2456999
Q ss_pred HHHHHHHccCcHHHHHHHHHHHH
Q 045820 181 NVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 181 ~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
.|..+|.+.|+++.|...++.+-
T Consensus 273 ~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 273 QLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999988774
No 80
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.70 E-value=0.0074 Score=42.12 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=83.1
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHH--HHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLL--MALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g 118 (225)
|..++..+..++...+...++.+.+..-.-.......|. ..+ ...|++++|...|+...+..
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~----------------~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAA----------------YEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH----------------HHCCCHHHHHHHHHHHHhhC
Confidence 455666667899999988999988773221122222222 333 45567777777777777655
Q ss_pred CCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 045820 119 LKPDV--YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 119 ~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
..|+. ...-.+-..+...|++++|+..++...... .....+...-..|...|+.++|.
T Consensus 79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--------------------~~~~~~~~~Gdi~~~~g~~~~A~ 138 (145)
T PF09976_consen 79 PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--------------------FKALAAELLGDIYLAQGDYDEAR 138 (145)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--------------------hHHHHHHHHHHHHHHCCCHHHHH
Confidence 33332 233446778888999999999997633222 23445666778899999999999
Q ss_pred HHHHHH
Q 045820 197 LLLFLM 202 (225)
Q Consensus 197 ~~~~~m 202 (225)
..|+.-
T Consensus 139 ~~y~~A 144 (145)
T PF09976_consen 139 AAYQKA 144 (145)
T ss_pred HHHHHh
Confidence 998763
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.68 E-value=0.0018 Score=44.43 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=75.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|.+.|......+ +.+...|..+-..+.+.|++++|..++++..+..- .+..+
T Consensus 28 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-------------------~~~~~ 87 (135)
T TIGR02552 28 YQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-------------------DDPRP 87 (135)
T ss_pred HHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------CChHH
Confidence 34456666666666666543 34677888899999999999999999998877642 46677
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
+..+-..|...|++++|...|+...+. .|+...+..+..
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 88 YFHAAECLLALGEPESALKALDLAIEI--CGENPEYSELKE 126 (135)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHHHHH
Confidence 888888999999999999999998874 466666554433
No 82
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.66 E-value=0.0017 Score=52.81 Aligned_cols=101 Identities=17% Similarity=0.265 Sum_probs=83.6
Q ss_pred HHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCH
Q 045820 44 FVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRV 104 (225)
Q Consensus 44 l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~ 104 (225)
++..+ ..++++.|..+|+++.+.. |+ ....+...+...++-.+|.+++.+. .+.++.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 44444 5688999999999999874 44 4556888888888888888887666 678999
Q ss_pred HHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 105 EEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
+.|+++.++..+ ..|+. .+|..+..+|.+.|+++.|+..++.+.
T Consensus 251 ~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999987 46755 589999999999999999999998875
No 83
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.64 E-value=0.0069 Score=49.71 Aligned_cols=133 Identities=9% Similarity=0.070 Sum_probs=106.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
..+++..|.++|++-.... ..+...|-..+.+=.++..+..|..+++.. -..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5678899999999887665 447888998999999999999999988776 557999999999
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g 190 (225)
|++..+ -.|+...|++.|+-=.+-..++.|..++++..-. +|++.+|--...--.++|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--------------------HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--------------------HPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--------------------cccHHHHHHHHHHHHhcC
Confidence 999886 4899999999999999999999999999998753 255566655555555666
Q ss_pred cHHHHHHHHHHHHh
Q 045820 191 KIHKALLLLFLMYE 204 (225)
Q Consensus 191 ~~~~a~~~~~~m~~ 204 (225)
++..|..+|....+
T Consensus 222 ~~~~aR~VyerAie 235 (677)
T KOG1915|consen 222 NVALARSVYERAIE 235 (677)
T ss_pred cHHHHHHHHHHHHH
Confidence 66666666665554
No 84
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.61 E-value=0.0016 Score=44.32 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH---LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
|..++.++|.++++.|+++....+++.. ...|...... .-......|+..+..+++.+|+..+++..|.++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~----~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd 76 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD----YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVD 76 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc----cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4678899999999999999999988777 1111110000 12345678999999999999999999999999999
Q ss_pred HHH-HcCCCccHHHHHHHH
Q 045820 148 EAI-ERGVTQNVVTLIQLL 165 (225)
Q Consensus 148 ~m~-~~g~~p~~~t~~~l~ 165 (225)
... ..++..+..+|..|+
T Consensus 77 ~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 77 FFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred HHHHHcCCCCCHHHHHHHH
Confidence 987 467775555555555
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.58 E-value=0.023 Score=44.81 Aligned_cols=102 Identities=18% Similarity=0.066 Sum_probs=78.2
Q ss_pred hCCHHHHHHHHHHHHhcC-CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHH
Q 045820 50 ASPLKERIDIFNSIKKDG-TNWS--VSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAY 108 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~ 108 (225)
.++.+.++.-+.++.... ..|+ ...|..+-..+.+.|+.+.|...|++. ...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456677777777777542 2222 345777777888999999999888776 6679999999
Q ss_pred HHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 109 EMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 109 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..|++..+. .| +..+|..+-.++...|++++|...|++..+..
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999998763 45 45677888888899999999999999888653
No 86
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.00024 Score=44.65 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHHhhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 101 VGRVEEAYEMLMNVKNDGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
.|+++.|..+|+++.+... .++...+-.+-.+|.+.|++++|..++++ .+.+. .+....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-------------------~~~~~~ 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-------------------SNPDIH 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-------------------CHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-------------------CCHHHH
Confidence 5788999999999887533 22444555589999999999999999988 33221 122333
Q ss_pred HHHHHHHHccCcHHHHHHHHHH
Q 045820 180 NNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~ 201 (225)
-.+..+|.+.|++++|++++++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 4557889999999999999875
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.56 E-value=0.029 Score=45.16 Aligned_cols=139 Identities=11% Similarity=0.035 Sum_probs=93.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHH---HHHHHHhcCCHHHHHHHHHHH------------------HhcCCHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFND---LLMALVMLNEQDTAVKFFSNH------------------LMVGRVE 105 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~ 105 (225)
....|++++|..++++..+.. +-+...+.. ........+..+.+.+.+... ...|+++
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence 447899999999998877652 334444442 111112234444444443211 5678889
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC--HHHHHHHH
Q 045820 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR--TITFNNVI 183 (225)
Q Consensus 106 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~--~~~~~~li 183 (225)
+|...+++..+.. +.+...+..+-..|...|++++|...+++.....-. .|+ ...|-.+.
T Consensus 132 ~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----------------~~~~~~~~~~~la 193 (355)
T cd05804 132 RAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----------------SSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----------------CcchhHHHHHHHH
Confidence 9999998887743 234567788888888999999999998887654211 022 23456778
Q ss_pred HHHHccCcHHHHHHHHHHHHh
Q 045820 184 QALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..+...|+.++|..++++...
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHhc
Confidence 889999999999999999864
No 88
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0045 Score=50.86 Aligned_cols=182 Identities=14% Similarity=0.081 Sum_probs=122.6
Q ss_pred CCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-
Q 045820 20 PSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH- 98 (225)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~- 98 (225)
.....++++++.+.......-+..-.-++...+.++.+..|+.-.+.+ +-|+.+|..--..+.-.++++.|..=|++.
T Consensus 343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555444432222222447788888888888776654 225666766666666666666666666554
Q ss_pred -----------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----c
Q 045820 99 -----------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-----Q 156 (225)
Q Consensus 99 -----------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-----p 156 (225)
.+.+.++++...|++.+.+ ++-....||..-..+...+++++|.+.|+..+...-. .
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v 500 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV 500 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc
Confidence 6778999999999998864 4446778999999999999999999999987754211 1
Q ss_pred cHHH--------------HHHHHHHhhcCCCCCH---HHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 157 NVVT--------------LIQLLQRLEMGHIPRT---ITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 157 ~~~t--------------~~~l~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+..+ ++..+.++++-++.|. ..|-.|-..-.+.|+.++|+++|++-.
T Consensus 501 ~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111 1222255555555554 468888888899999999999999764
No 89
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.54 E-value=0.0075 Score=42.07 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=80.6
Q ss_pred HHhCCHHHHHHHHHHHHhc--C-CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 045820 48 IKASPLKERIDIFNSIKKD--G-TNWSV--SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~--g-~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 122 (225)
...++.+.+...+++.... | +-++. ..|..-.....+..-.+....+.......|++++|..+...+.... +-|
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~ 95 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-PYD 95 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCC
Confidence 3567888898888887654 2 33342 3577777777777767777777777788999999999999998743 348
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIE-----RGVTQNVVTL 161 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~ 161 (225)
...|-.+|.+|...|+...|.++|+++.+ .|+.|+..|-
T Consensus 96 E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 96 EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 88999999999999999999999988743 4888766543
No 90
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.017 Score=47.32 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=107.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
-.++.++|...|++-.+.+ +-....|+.+=.-|..-.+...|.+-++.. ...+...-|+-.
T Consensus 342 lr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred HHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHH
Confidence 4578899999998877664 225566888888899888888888888766 334556666777
Q ss_pred HHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc
Q 045820 111 LMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189 (225)
Q Consensus 111 ~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~ 189 (225)
|.+... .+| |...|.++-.+|.+.++.++|..+|......|- .+...+..|-..|-+.
T Consensus 421 fqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-------------------te~~~l~~LakLye~l 479 (559)
T KOG1155|consen 421 FQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-------------------TEGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-------------------cchHHHHHHHHHHHHH
Confidence 776654 466 889999999999999999999999999988764 3457788888999999
Q ss_pred CcHHHHHHHHHHHHh
Q 045820 190 GKIHKALLLLFLMYE 204 (225)
Q Consensus 190 g~~~~a~~~~~~m~~ 204 (225)
++.++|.+.|+...+
T Consensus 480 ~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVE 494 (559)
T ss_pred HhHHHHHHHHHHHHH
Confidence 999999888887765
No 91
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.48 E-value=0.062 Score=47.39 Aligned_cols=165 Identities=12% Similarity=0.081 Sum_probs=115.6
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
...|+.++|..++.+..+.. +.+...|-+|-..|-..|+.+++...+-.. .+.|.++.|.-
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 36699999999999988774 557888999999999999999888765332 67788999999
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---------------------HHh
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------------------QRL 168 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~---------------------~~~ 168 (225)
+|.+..+.. +++...+--=...|-+.|+...|.+.|.++....-..|..-+-.++ ...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999988753 3444444444678999999999999999988654322222222222 111
Q ss_pred -hcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHH
Q 045820 169 -EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214 (225)
Q Consensus 169 -~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 214 (225)
..+-..+...++.++..|.+..+++.|......+.....++|..-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 1123345566778888888888888888877777765555554433
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.48 E-value=0.03 Score=46.04 Aligned_cols=143 Identities=14% Similarity=0.120 Sum_probs=76.9
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLK 120 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~ 120 (225)
|-.-+..+..|++++|+..++.+.+. .+-|+.-+......+.+.++.++|.+ .++++.+. .
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e----------------~~~kal~l--~ 370 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIE----------------RLKKALAL--D 370 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHH----------------HHHHHHhc--C
Confidence 44455666889999999999998877 23355555666667755565555544 44444442 3
Q ss_pred CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 121 PD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 121 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
|+ ....-.+-.+|.+.|+..+|..++++-.... +-|+..|..|-+.++.-- -....-.+--.+|...|+++.|+..+
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g-~~~~a~~A~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELG-NRAEALLARAEGYALAGRLEQAIIFL 448 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhC-chHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 43 3334445566666666666666666655432 223333333332222111 11122223334445555566666666
Q ss_pred HHHHh
Q 045820 200 FLMYE 204 (225)
Q Consensus 200 ~~m~~ 204 (225)
....+
T Consensus 449 ~~A~~ 453 (484)
T COG4783 449 MRASQ 453 (484)
T ss_pred HHHHH
Confidence 55554
No 93
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.011 Score=49.31 Aligned_cols=179 Identities=15% Similarity=0.076 Sum_probs=126.1
Q ss_pred CCCCCChhhcchhhcCcchh------hhHHHHHHH-HhCCHHHHHHHHHHHHhc--C-CCCChhhHHHHHHHHHhcCCHH
Q 045820 20 PSRSPSAAESLDLKENPRSL------QAQRFVDKI-KASPLKERIDIFNSIKKD--G-TNWSVSDFNDLLMALVMLNEQD 89 (225)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~------~~~~l~~~~-~~~~~~~a~~~~~~m~~~--g-~~~~~~~~~~li~~~~~~~~~~ 89 (225)
|.-.|.+.+|.+.+.+-... +|-.+-+.+ -.+..+.|...+..--+. | ..|.. | +---|.+.+.++
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y--lgmey~~t~n~k 397 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y--LGMEYMRTNNLK 397 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H--HHHHHHHhccHH
Confidence 44458888999888773322 122233333 456677777766543322 2 23333 2 222466677888
Q ss_pred HHHHHHHHH------------------HhcCCHHHHHHHHHHHhh----CCC-C-CCHHhHHHHHHHHHhcCCHHHHHHH
Q 045820 90 TAVKFFSNH------------------LMVGRVEEAYEMLMNVKN----DGL-K-PDVYTYTAIMDGFCKVGRSNEAMEL 145 (225)
Q Consensus 90 ~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~----~g~-~-p~~~~~~~ll~~~~~~g~~~~a~~~ 145 (225)
.|.++|.+. ...+.+.+|..+|..... .+- + .-..+++.+-.+|.+.+.+++|...
T Consensus 398 LAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888887666 456788888888887652 111 1 1345688899999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 146 LNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 146 ~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
+++.....- .|..++.++--.|...|+++.|++.|.+-. .+.||..+-..++..+..
T Consensus 478 ~q~aL~l~~-------------------k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLLSP-------------------KDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHcCC-------------------CchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 999887643 588999999999999999999999999877 478999888888876543
No 94
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.0061 Score=51.59 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=113.4
Q ss_pred CCCchhhHhhhcCCCCCChhhcchhhcCcchhh----hHHHH--H-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHH--
Q 045820 8 SPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQ----AQRFV--D-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDL-- 78 (225)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~l~--~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-- 78 (225)
..+.++-.+=++|+-.++.+.|++.|.+.-... |.-.+ + .+....++.|...|+.-. .+|+..||+.
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYG 494 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYG 494 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHh
Confidence 344555577778888888888888887633222 22111 1 235556677776665443 4566666653
Q ss_pred -HHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHh-HHHHHHHHHhcCC
Q 045820 79 -LMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYT-YTAIMDGFCKVGR 138 (225)
Q Consensus 79 -i~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~ 138 (225)
--.|.+.++++.|.-.|+.. -+.|+.++|+++|++..-...+ |+.. |.. ...+.-.++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~-~~il~~~~~ 572 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR-ASILFSLGR 572 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH-HHHHHhhcc
Confidence 44577788888887777666 5567888888888876643322 3333 443 445666777
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 139 SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 139 ~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
+++|+..++++++.- |+ ...|..+-..|.+.|+.+.|..-|-.+.+-
T Consensus 573 ~~eal~~LEeLk~~v--------------------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 573 YVEALQELEELKELV--------------------PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hHHHHHHHHHHHHhC--------------------cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 888888888887742 44 456777778899999999999888888764
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.43 E-value=0.027 Score=49.56 Aligned_cols=113 Identities=11% Similarity=-0.004 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMD 131 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~ 131 (225)
+...+-.|-....+.|..++|..+++.. .+.+++++|...+++..+. .| +....+.+-.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHH
Confidence 3444555555555555555555555444 5567777777777777664 45 4455677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 132 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
++.+.|++++|..+|++....+- -+..++..+-.++-..|+.++|...|+...+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p-------------------~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHP-------------------EFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCC-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888888888888888887331 2356777777778888888888888887765
No 96
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.41 E-value=0.042 Score=48.37 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
++..|.-+..+|...|++.+|+.+|..+...-.--+...|-.+-.+|-.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 4567888889999999999999999998875333345666666655543
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0031 Score=48.77 Aligned_cols=136 Identities=16% Similarity=0.125 Sum_probs=84.5
Q ss_pred HhhhcCCCCCChhhcchhhcCc-----chhhhHH--HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--c
Q 045820 15 LLVDSPSRSPSAAESLDLKENP-----RSLQAQR--FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM--L 85 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~--l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~ 85 (225)
.|-.+|-+..++.+|...+.+. +...|.. .-..++++.+.+|+++...|.+. |+...-..-+.+-.+ .
T Consensus 49 lLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse 125 (459)
T KOG4340|consen 49 LLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSE 125 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhccc
Confidence 4444555555555555555442 2222221 11234677777777777766543 233322222333222 3
Q ss_pred CCHHHHHHHHHHH----------------HhcCCHHHHHHHHHHHhh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 86 NEQDTAVKFFSNH----------------LMVGRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 86 ~~~~~a~~~~~~~----------------~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
+|+..+..+.++. .+.|+.+.|.+-|....+ .|..| ...||.-+ ++-+.|+++.|++...+
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISE 203 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 5666666666665 678999999999999876 55544 55898877 55567889999999999
Q ss_pred HHHcCCC
Q 045820 149 AIERGVT 155 (225)
Q Consensus 149 m~~~g~~ 155 (225)
.++.|++
T Consensus 204 IieRG~r 210 (459)
T KOG4340|consen 204 IIERGIR 210 (459)
T ss_pred HHHhhhh
Confidence 9998875
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.39 E-value=0.016 Score=39.56 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=66.0
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
.+..|++++|...|+.....+ +.+...|..+-..+.+.|++ ++|...|++..+.+ +.+...+
T Consensus 27 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~----------------~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEY----------------EEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhcC-CCChHHH
Confidence 458899999999999987764 34677777787778555555 55555555554432 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-..|...|++++|...|++..+..
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 777889999999999999999888753
No 99
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0074 Score=37.43 Aligned_cols=86 Identities=22% Similarity=0.250 Sum_probs=65.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
..|++++|...|.+..+.. +.+...+..+...+...+++++|...++...+... .+..++
T Consensus 12 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------------------~~~~~~ 71 (100)
T cd00189 12 KLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-------------------DNAKAY 71 (100)
T ss_pred HHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------------cchhHH
Confidence 3466677777777766532 22446788888899999999999999999887643 344678
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+...+...|+.++|...+....+.
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 88889999999999999999887653
No 100
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.37 E-value=0.023 Score=39.60 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=55.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
.+...++..+...|++++|..+...+....- .|...|..+|.+|...|+..+|.++|+.+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-------------------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP-------------------YDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-------------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-------------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3556677888899999999999999987643 578899999999999999999999999885
Q ss_pred h-----cCCCCCHHHHHH
Q 045820 204 E-----HGKIPSRTSHDM 216 (225)
Q Consensus 204 ~-----~g~~p~~~~~~~ 216 (225)
+ -|+.|+..+-..
T Consensus 124 ~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 124 RRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHS----HHHHHH
T ss_pred HHHHHHhCcCcCHHHHHH
Confidence 3 399999877543
No 101
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.35 E-value=0.0086 Score=48.46 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=80.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|...+++..+..- .+...
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-------------------~~~~a 72 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-------------------SLAKA 72 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------------------CCHHH
Confidence 46689999999999988643 23667788888999999999999999999987642 35677
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
|..+-.+|...|++++|...|++..+. .|+......++.-|
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 888889999999999999999999863 46666655555444
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.007 Score=46.89 Aligned_cols=103 Identities=16% Similarity=0.077 Sum_probs=69.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC-------------CC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLK-------------PD---------------VYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~-------------p~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
.+.|+.+.|++...++.++|++ || +..+|.-...+-+.|+++.|.+-+.+|.
T Consensus 189 y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmP 268 (459)
T KOG4340|consen 189 YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMP 268 (459)
T ss_pred HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCC
Confidence 3556666677666666665443 22 2234444445567889999999999887
Q ss_pred -HcCCCccHHHHHHHHHHh--------------hcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 151 -ERGVTQNVVTLIQLLQRL--------------EMGHI-PRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 151 -~~g~~p~~~t~~~l~~~~--------------~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+.....|++|...+.-+- -.++. -..+||..++--||++.-++-|.+++.+
T Consensus 269 PRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 269 PRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 455677888887665110 11122 3468999999999999999999888765
No 103
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0025 Score=52.27 Aligned_cols=138 Identities=16% Similarity=0.136 Sum_probs=102.8
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhhhH---HHH-HH---HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQAQ---RFV-DK---IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~l~-~~---~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
+.|+.--..+.-.+++++|..-|++-....-+ +.+ .+ +|.+.++++...|++-++. ++--+..||-.-..+.
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILT 473 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHh
Confidence 34443333344456677777777764333222 122 22 3899999999999998877 6667888999999999
Q ss_pred hcCCHHHHHHHHHHH-------------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcC
Q 045820 84 MLNEQDTAVKFFSNH-------------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVG 137 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~-------------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 137 (225)
..+++++|.+.|+.. -=.+++..|..++.+..+- .| ....|-.|-..-.+.|
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRG 551 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHh
Confidence 999999999999776 1137888999998887763 34 5678999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 045820 138 RSNEAMELLNEAIE 151 (225)
Q Consensus 138 ~~~~a~~~~~~m~~ 151 (225)
+.++|.++|++-..
T Consensus 552 ~i~eAielFEksa~ 565 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998654
No 104
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.29 E-value=0.0067 Score=47.39 Aligned_cols=144 Identities=12% Similarity=0.142 Sum_probs=93.6
Q ss_pred hhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045820 40 QAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 40 ~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g 118 (225)
.|..++..+ +.+..+.|..+|.+.++.+ ..+..+|-..-..-- ...++.+.|.++|+...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~---------------~~~~d~~~A~~Ife~glk~- 65 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEY---------------YCNKDPKRARKIFERGLKK- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHH---------------HTCS-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH---------------HhCCCHHHHHHHHHHHHHH-
Confidence 345556665 6777999999999988543 223333332222211 1234555577777776543
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHccCcHHHHHH
Q 045820 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP-RTITFNNVIQALCGVGKIHKALL 197 (225)
Q Consensus 119 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 197 (225)
+..+..-|..-++-+.+.++.+.|..+|++.... +.++ . ....|...+.--.+.|+.+.+.+
T Consensus 66 f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~----------------~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 66 FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKE----------------KQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCH----------------HHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCch----------------hHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4457778999999999999999999999998865 3100 1 23589999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHH
Q 045820 198 LLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 198 ~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
+.+.+.+. .|+......+++
T Consensus 129 v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 129 VEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHHHHH--hhhhhHHHHHHH
Confidence 99988874 455444444443
No 105
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.031 Score=45.81 Aligned_cols=119 Identities=8% Similarity=0.106 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLM 112 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~ 112 (225)
-+...|++++.+.... ++-|+.+.+.|-+.|-+.|+-..|.+.+=+. ....-++++...|+
T Consensus 572 ed~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred hCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4445555555443322 4557777888888888888888887764322 45566788888888
Q ss_pred HHhhCCCCCCHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCc
Q 045820 113 NVKNDGLKPDVYTYTAIMDGF-CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191 (225)
Q Consensus 113 ~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~ 191 (225)
+.. -+.|+..-|-.|+..| .+.|++++|++++.+.... ++ -|....-.|++-+...|-
T Consensus 651 kaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fp------------------edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 651 KAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FP------------------EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cc------------------cchHHHHHHHHHhccccc
Confidence 654 3689999999888766 5679999999999988754 32 456666666666666553
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.25 E-value=0.017 Score=38.28 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=66.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC-C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLK-P-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~ 176 (225)
.+.|++++|.+.|.++.+.... + ....+..+..++.+.|+++.|...|++.....-. . ....
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~--------------~~~~ 76 (119)
T TIGR02795 13 LKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK--S--------------PKAP 76 (119)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC--C--------------Cccc
Confidence 4556677777777777653211 1 2345667889999999999999999998864311 0 0124
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
..+..+..++.+.|+.++|.+.++++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 567777888899999999999999999763
No 107
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.065 Score=44.31 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=36.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
..|++..|.++|++..+- .|+...|++.|+.=.+...++.|..+++..
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567788888888776544 778888888888877777777777777665
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.25 E-value=0.048 Score=41.15 Aligned_cols=153 Identities=14% Similarity=0.017 Sum_probs=87.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------------HhcCCHHHHHHHHHHHhhCCCC-CCH-HhHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH---------------------LMVGRVEEAYEMLMNVKNDGLK-PDV-YTYT 127 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------------~~~g~~~~a~~~~~~m~~~g~~-p~~-~~~~ 127 (225)
....+-.+...+.+.|+++.|...|+++ ...|++++|...++++.+.... |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4455666667777788888888777655 4567888888888887653211 111 1333
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 128 AIMDGFCKV--------GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 128 ~ll~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
.+-.++.+. |+.++|...++...+.... +......+.......... ......+-..|.+.|++++|...+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRL-AGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHH
Confidence 333444433 6677788888877754221 111111111110000000 011124556788899999999999
Q ss_pred HHHHhcC--CCCCHHHHHHHHHHhhcCC
Q 045820 200 FLMYEHG--KIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 200 ~~m~~~g--~~p~~~~~~~ll~~~~~~g 225 (225)
++..+.. -......+..+..++.+.|
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 9998752 1223466777777766544
No 109
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.052 Score=41.15 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=96.9
Q ss_pred HhCCHHHHHHHHHHHHh---cC-CCCChhh-HHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHH
Q 045820 49 KASPLKERIDIFNSIKK---DG-TNWSVSD-FNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVE 105 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~---~g-~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~ 105 (225)
...+.++.++++.++.. +| ..++..+ |--++-+....|+.+.|...++.+ -..|.++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 45778888888887753 24 4555544 566777777788888888887776 4468888
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045820 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185 (225)
Q Consensus 106 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~ 185 (225)
+|.++++.+.+.. +.|..+|--=+-..--.|+--+|.+-+.+..+.= ..|...|--+-.-
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-------------------~~D~EAW~eLaei 163 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-------------------MNDQEAWHELAEI 163 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-------------------cCcHHHHHHHHHH
Confidence 8888888887654 3466666554545545555556666665555432 3788999999999
Q ss_pred HHccCcHHHHHHHHHHHHh
Q 045820 186 LCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~ 204 (225)
|...|++++|.-.++++.-
T Consensus 164 Y~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 164 YLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHhHhHHHHHHHHHHHHHH
Confidence 9999999999999999875
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.031 Score=42.32 Aligned_cols=119 Identities=16% Similarity=0.111 Sum_probs=85.9
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH
Q 045820 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVY 124 (225)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ 124 (225)
..++.|++..|+..|++...- -++|...|+.+=-+|.+.|+++.|..-|.+ ..+ +.| +..
T Consensus 109 ~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~q----------------Al~--L~~~~p~ 169 (257)
T COG5010 109 NQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQ----------------ALE--LAPNEPS 169 (257)
T ss_pred HHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHH----------------HHH--hccCCch
Confidence 356888899998888877654 367888888888888776666665554443 222 233 455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
.+|.+--.|.-.|+.++|+.++......+. -|...-..+...-...|++++|.++-..-
T Consensus 170 ~~nNlgms~~L~gd~~~A~~lll~a~l~~~-------------------ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 170 IANNLGMSLLLRGDLEDAETLLLPAYLSPA-------------------ADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-------------------CchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 677777788888888888888888877654 36677777888888888888888775543
No 111
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.032 Score=49.58 Aligned_cols=152 Identities=15% Similarity=0.108 Sum_probs=110.0
Q ss_pred hCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHH
Q 045820 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEML 111 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~ 111 (225)
.+..++|+.+|.+..+.. +.|...=|-+--.++..|+++.|..+|.+. ...|++..|.++|
T Consensus 625 kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 456777888888777663 447777777777788888888888888777 5678888899998
Q ss_pred HHHhh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh------hcCCCCCHHHHHHHHH
Q 045820 112 MNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL------EMGHIPRTITFNNVIQ 184 (225)
Q Consensus 112 ~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~------~~~~~p~~~~~~~li~ 184 (225)
+...+ .+-.-+....+.|-.+|-+.|.+.+|.+.+.........-..+-||..+.+. ....+++..- +..
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ee---v~~ 780 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEE---VLE 780 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHH---HHH
Confidence 88654 4444577889999999999999999999998888776666667888777222 2222233322 222
Q ss_pred HHHccCcHHHHHHHHHHHHhcCCC
Q 045820 185 ALCGVGKIHKALLLLFLMYEHGKI 208 (225)
Q Consensus 185 ~~~~~g~~~~a~~~~~~m~~~g~~ 208 (225)
..+..+.|.++|.+|...+-+
T Consensus 781 ---a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 781 ---AVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCC
Confidence 235578999999999876543
No 112
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.19 E-value=0.056 Score=40.39 Aligned_cols=179 Identities=14% Similarity=0.029 Sum_probs=135.0
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh-----hHHHHHH-H-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ-----AQRFVDK-I-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~l~~~-~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
.|--+|.+.|+...|...+++..... ...++.. + +.|+.+.|.+-|+.-.+.. +-+-.+.|..=.-+|..|.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 56678999999999988887743332 2222222 2 8899999999999877663 2266677888888899999
Q ss_pred HHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 88 QDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 88 ~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
++.|...|+.. .+.|+.+.|.+.|.+-.+.. | ...+.-.+....-+.|++..|...+
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 99999999887 77899999999999987743 3 3456777888899999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 147 ~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
+.....+. ++..+.-..|.---..|+.+.+-++=..+.+. -|...-|..+
T Consensus 197 ~~~~~~~~-------------------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 197 ERYQQRGG-------------------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHhccc-------------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 99888765 55666666666667788888887777776653 4555544443
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.17 E-value=0.028 Score=39.24 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=68.1
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|+...... +.+...|..+-.++.+.|++ ++|...|++..... +.+..++
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~----------------~~A~~~y~~Al~l~-p~~~~a~ 95 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEY----------------TTAINFYGHALMLD-ASHPEPV 95 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhH----------------HHHHHHHHHHHhcC-CCCcHHH
Confidence 348899999999999987664 34777788888888555554 55555555555432 3477888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-.++.+.|+.++|...|+...+..
T Consensus 96 ~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 96 YQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888999999999999999999988754
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.17 E-value=0.073 Score=43.90 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=76.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC-H
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR-T 176 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~-~ 176 (225)
...|+.++|+..++.+... .| |+.-+......+.+.++..+|.+.++++...- |+ .
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--------------------P~~~ 374 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--------------------PNSP 374 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------CCcc
Confidence 4568999999999998764 45 66677788899999999999999999998753 33 3
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..+-.+-.+|.+.|++.+|+.+++..... .+-|...|..|-++|.++|
T Consensus 375 ~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 375 LLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhC
Confidence 44455556677777777777777766543 3446677777777776655
No 115
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.17 E-value=0.0028 Score=37.81 Aligned_cols=64 Identities=25% Similarity=0.262 Sum_probs=52.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 134 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
.+.|++++|..+|+++.+..- -+...+-.+..+|.+.|++++|..+++.+... .|+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~ 60 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-------------------DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPE 60 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-------------------TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHH
Confidence 468999999999999987642 36778888999999999999999999999875 477666
Q ss_pred HHHHH
Q 045820 214 HDMLI 218 (225)
Q Consensus 214 ~~~ll 218 (225)
|..++
T Consensus 61 ~~~l~ 65 (68)
T PF14559_consen 61 YQQLL 65 (68)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.12 E-value=0.011 Score=54.31 Aligned_cols=130 Identities=13% Similarity=0.096 Sum_probs=103.4
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------------HhcCCHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------LMVGRVEEAY 108 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------~~~g~~~~a~ 108 (225)
+....++|.++++.|.+. +.-...+|......+.+.++-+.|..++... .+.|+.+.+.
T Consensus 1542 k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGR 1620 (1710)
T KOG1070|consen 1542 KSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGR 1620 (1710)
T ss_pred HhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhH
Confidence 788999999999999766 2357788999999999999999998888665 7889999999
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~ 188 (225)
.+|+...... +--+..|+..|+.=.++|+.+.+..+|++....++.|-- --..|.-.+..--+
T Consensus 1621 tlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk----------------mKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1621 TLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK----------------MKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH----------------hHHHHHHHHHHHHh
Confidence 9999998753 235668999999999999999999999999998876321 12355555555555
Q ss_pred cCcHHHHH
Q 045820 189 VGKIHKAL 196 (225)
Q Consensus 189 ~g~~~~a~ 196 (225)
+|+-+.++
T Consensus 1684 ~Gde~~vE 1691 (1710)
T KOG1070|consen 1684 HGDEKNVE 1691 (1710)
T ss_pred cCchhhHH
Confidence 66644333
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.12 E-value=0.061 Score=47.39 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=92.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
+.|..++|..+++...+. .| +...+..+...+.+.+++++|...++.. .+.|++++|..
T Consensus 98 ~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHH
Confidence 789999999999999877 44 5556888999999999999999998877 77899999999
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
+|++....+ +-+..++...-.++-+.|+.++|...|++..+.- .|.+.-|+-.+
T Consensus 176 ~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 176 CFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 999999732 2247788899999999999999999999988642 33334444443
No 118
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.11 E-value=0.017 Score=45.18 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH----Hhc-CCHHHHHHHHHHHhh----CCCCCC--HHhHHHHHHHHHhcCCHH
Q 045820 72 VSDFNDLLMALVMLNEQDTAVKFFSNH----LMV-GRVEEAYEMLMNVKN----DGLKPD--VYTYTAIMDGFCKVGRSN 140 (225)
Q Consensus 72 ~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~-g~~~~a~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~g~~~ 140 (225)
...|...+..|.+.|+++.|-.++..+ -.. |++++|.+.|.+..+ .| .+. ...+.-+...+.+.|+++
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHH
Confidence 445777888899999999998888877 334 799999999988654 34 222 345677888999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHhc--CCCCC--HHHHH
Q 045820 141 EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEH--GKIPS--RTSHD 215 (225)
Q Consensus 141 ~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~~~~ 215 (225)
+|..+|++........+. .+.++. .|-..+-++...||...|...+++.... ++..+ .....
T Consensus 173 ~A~~~~e~~~~~~l~~~l-------------~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNL-------------LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHHHHTCCCHCT-------------TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc-------------cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 999999998875443110 012222 2334445666778999999999988753 33323 35556
Q ss_pred HHHHHhh
Q 045820 216 MLIKKLD 222 (225)
Q Consensus 216 ~ll~~~~ 222 (225)
.||.+|-
T Consensus 240 ~l~~A~~ 246 (282)
T PF14938_consen 240 DLLEAYE 246 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
No 119
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.09 E-value=0.043 Score=37.35 Aligned_cols=135 Identities=15% Similarity=0.174 Sum_probs=95.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCHHHHHHHHHHHhhCCCC
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------LMVGRVEEAYEMLMNVKNDGLK 120 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------~~~g~~~~a~~~~~~m~~~g~~ 120 (225)
.+-.|.+++..++......+. +..-||-+|--....-+=+.+.++++.. ..+|.+.....++..+-
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n----- 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN----- 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-----
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc-----
Confidence 346789999999988776542 5555777777777777777788888777 66788888887776543
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
.+..-.+.-++...+.|+-+.-.++..++.+.+- ++....-.+-.+|.+.|+..++-++++
T Consensus 84 ~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~-------------------~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 84 KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEE-------------------INPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp ---HHHHHHHHHHHHTT-HHHHHHHHHHH------------------------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccC-------------------CCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 2455678889999999999999999999876443 777888889999999999999999999
Q ss_pred HHHhcCCC
Q 045820 201 LMYEHGKI 208 (225)
Q Consensus 201 ~m~~~g~~ 208 (225)
+..+.|++
T Consensus 145 ~ACekG~k 152 (161)
T PF09205_consen 145 EACEKGLK 152 (161)
T ss_dssp HHHHTT-H
T ss_pred HHHHhchH
Confidence 99999864
No 120
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.09 E-value=0.057 Score=45.56 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=78.1
Q ss_pred HhCCHHHHHHHHHHHHhc-----CC-CCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 49 KASPLKERIDIFNSIKKD-----GT-NWSVSDF-NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~-----g~-~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
..|+++.|..++++-.+. |. .|.+.+. +.+-..|...+++++|..+|+++ +.+++...-..-+.
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A---------L~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA---------LTIREEVFGEDHPA 281 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH---------HHHHHHhcCCCCHH
Confidence 889999999999865433 31 2222222 22445667778888887777655 22222222111111
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-ccHHHHH---HHH------------------HHhhcCCCC
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIER-----GVT-QNVVTLI---QLL------------------QRLEMGHIP 174 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~-p~~~t~~---~l~------------------~~~~~~~~p 174 (225)
-..+++.|-.+|.+.|++++|...+++..+. |.. |...+.. +++ +....-+.+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 2223444444555555555554444433211 110 1111000 000 111111112
Q ss_pred ----CHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 175 ----RTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 175 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
-..+|+.|-..|-..|++++|.+++++.+.
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 246899999999999999999999998864
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.02 E-value=0.14 Score=47.60 Aligned_cols=164 Identities=17% Similarity=0.119 Sum_probs=111.2
Q ss_pred HHHhCCHHHHHHHHHHHHhc-CCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHH-----------------HhcCCHH
Q 045820 47 KIKASPLKERIDIFNSIKKD-GTN---WSVSDFNDLLMALVMLNEQDTAVKFFSNH-----------------LMVGRVE 105 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~-g~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~-----------------~~~g~~~ 105 (225)
.+..++.++|..++++-... +++ --...|.++++.-...|.-+...++|++. .+.+..+
T Consensus 1468 ~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~ 1547 (1710)
T KOG1070|consen 1468 HLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKND 1547 (1710)
T ss_pred HhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcch
Confidence 34778888888888776543 221 13345777777777777777777777776 4456778
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-H-HhhcCC-----------
Q 045820 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-Q-RLEMGH----------- 172 (225)
Q Consensus 106 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-~-~~~~~~----------- 172 (225)
+|.++|+.|.++ +.-....|...+..+.++.+-+.|..++.+..+.--+-...-+..-. + ++..|-
T Consensus 1548 ~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1548 EADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred hHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence 888888888653 22456678888888888888888888888776542221122111111 1 111111
Q ss_pred ----CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 173 ----IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 173 ----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
.--...|+..|+.-.++|+.+.+.++|++.+..++.|-.
T Consensus 1627 l~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1627 LSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 113457999999999999999999999999998887754
No 122
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.98 E-value=0.039 Score=38.47 Aligned_cols=119 Identities=14% Similarity=0.148 Sum_probs=76.6
Q ss_pred HHHHHHHHHHH---HhcCCHHHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 045820 88 QDTAVKFFSNH---LMVGRVEEAYEMLMNVKNDGLKPD---VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161 (225)
Q Consensus 88 ~~~a~~~~~~~---~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 161 (225)
.+.+..+|..+ ...++...+...++.+.+.. +.+ ....=.+-..+...|++++|...|+........|+.
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l--- 83 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL--- 83 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH---
Confidence 34455555555 34688888888888887753 122 222333557888999999999999999987632111
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 162 ~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
-....-.+...+...|++++|...++......+ ....+...=+.|.++|
T Consensus 84 -------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 84 -------------KPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQG 132 (145)
T ss_pred -------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCC
Confidence 112344567888889999999999977443333 3334445555555544
No 123
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.95 E-value=0.006 Score=46.83 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=74.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD--TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
+.++++-....++.|++-|+..|..+|+.||+.+=+..-+. --.++|-.. -.+-+-+.+++++|+..|+.||-.+-
T Consensus 84 ~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e 161 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIE 161 (406)
T ss_pred ccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHH
Confidence 45667777778899999999999999999999986654322 112233222 22335688999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHH
Q 045820 127 TAIMDGFCKVGRS-NEAMELLNEAIE 151 (225)
Q Consensus 127 ~~ll~~~~~~g~~-~~a~~~~~~m~~ 151 (225)
..++++|++.+-. .+..++.-.|.+
T Consensus 162 ~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 162 DILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHhccccccHHHHHHHHHhhhh
Confidence 9999999999853 344445444543
No 124
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.93 E-value=0.19 Score=43.17 Aligned_cols=175 Identities=10% Similarity=0.003 Sum_probs=101.8
Q ss_pred hhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHH-hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH
Q 045820 26 AAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIK-KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRV 104 (225)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~ 104 (225)
++.++-++++|+..-..-+--.++.+++......|+.-. ..-+.--..+|...|.-.-..+-.
T Consensus 91 ~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lP---------------- 154 (835)
T KOG2047|consen 91 FERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLP---------------- 154 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCCh----------------
Confidence 455666666776665555555567777777777776543 333444555677666666444444
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCccHHHHHHHHHHh----------
Q 045820 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER------GVTQNVVTLIQLLQRL---------- 168 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~l~~~~---------- 168 (225)
+.+.+++++-.+ .++..-+-.|.-+++.+++++|-+.+...... ..+.+...|.-+.+..
T Consensus 155 ets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sl 230 (835)
T KOG2047|consen 155 ETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSL 230 (835)
T ss_pred HHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhccc
Confidence 444444444442 23333455566666666666665555544322 1122333333333221
Q ss_pred ------hcCC--CCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 045820 169 ------EMGH--IPRT--ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 169 ------~~~~--~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 222 (225)
..|+ -+|. ..|++|..-|.+.|.+++|-+++++-+..- .+..-|+.+.++|+
T Consensus 231 nvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 231 NVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred CHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 1111 1332 369999999999999999999999988753 34555667777765
No 125
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.021 Score=45.33 Aligned_cols=109 Identities=13% Similarity=0.174 Sum_probs=57.4
Q ss_pred chhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcC-------CHHHHHHHHHHH---------
Q 045820 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA--LVMLN-------EQDTAVKFFSNH--------- 98 (225)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~~-------~~~~a~~~~~~~--------- 98 (225)
++...+.++..++.+++++|..+.+++. +.++.-| ++.+ ++..| ++.-|.+.|+-.
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey--ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY--ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcC----CCChHHH--HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 3334445555667788888877765543 1122222 2222 12222 244555555444
Q ss_pred -----------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 99 -----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 99 -----------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.-..++++.+-.++.+++-=..-|.+.||. ..|++..|++.+|+++|-+....
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~-AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNL-AQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHH-HHHHHHhcChHHHHHHHhhhcCh
Confidence 112344555555555554433445555554 56777778888888887665543
No 126
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.88 E-value=0.0059 Score=36.35 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=43.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..|++++|.++|+++.+.. +-+...+-.+..+|.+.|++++|..+++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5688899999999987642 2277778889999999999999999999988764
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.87 E-value=0.13 Score=46.28 Aligned_cols=205 Identities=10% Similarity=0.100 Sum_probs=119.2
Q ss_pred hhhHhhhcCCCCCChhhcchhhcC-----cchhhhHHHHH--HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKEN-----PRSLQAQRFVD--KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~l~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
....|+..+-+.+++++|.++... +....+--+.. ....++..++..+ .+... .+...-|+.+-..|..
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHHHHHHHH
Confidence 334778888888888888877653 11111111111 2255666666555 22221 2222223333333333
Q ss_pred cCCHHH---HHHHHHHH-HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---C--
Q 045820 85 LNEQDT---AVKFFSNH-LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV---T-- 155 (225)
Q Consensus 85 ~~~~~~---a~~~~~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---~-- 155 (225)
.+++-. |..-+... -+.|+.++|..+|+++.+.. +-|+.+.|-+-..|+.. ++++|+.++.+....-+ +
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~ 186 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYV 186 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcch
Confidence 333221 22111111 35588888888888887754 34777888888888888 88888888776654311 1
Q ss_pred -------------cc-HHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 156 -------------QN-VVTLIQLLQRL--EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 156 -------------p~-~~t~~~l~~~~--~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
|+ ...|-.+.+.. ..|..--+.++-.+-..|-...++++++++++.+.+.- +-|.....-|+.
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~ 265 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIR 265 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHH
Confidence 11 11111222222 12445567788888899999999999999999998743 236667777777
Q ss_pred Hhhc
Q 045820 220 KLDQ 223 (225)
Q Consensus 220 ~~~~ 223 (225)
+|.+
T Consensus 266 ~y~~ 269 (906)
T PRK14720 266 FYKE 269 (906)
T ss_pred HHHH
Confidence 7653
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.83 E-value=0.047 Score=33.59 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=61.8
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...+++..+.. +.+...+..+...+...+++ ++|.+.|....+.. +.+..++
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------------~~a~~~~~~~~~~~-~~~~~~~ 71 (100)
T cd00189 10 YYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKY----------------EEALEDYEKALELD-PDNAKAY 71 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhCC-CcchhHH
Confidence 347899999999999887663 22445666677777555544 55555555544432 2344678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..+...+...|++++|...+.+..+.
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 88889999999999999999887653
No 129
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.75 E-value=0.011 Score=51.10 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=96.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHhh
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------LMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------~~~g~~~~a~~~~~~m~~ 116 (225)
++.++++.+|+.+++.+...... .--|..+-+.|+..|+++.|.++|.+- .++|.|+.|.++-.+..
T Consensus 742 ai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~- 818 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECH- 818 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhc-
Confidence 34789999999999999877443 334788889999999999999998655 88899999998876654
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH--------HHHHHHHHhhcCCCCC--HHHHHHHHHHH
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV--------TLIQLLQRLEMGHIPR--TITFNNVIQAL 186 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--------t~~~l~~~~~~~~~p~--~~~~~~li~~~ 186 (225)
|....+..|-+-..-.-++|++.+|++++-.... |+.. -+.-++++.++ ..|+ ..|--.+-.-|
T Consensus 819 -~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~aiqmydk~~~~ddmirlv~k-~h~d~l~dt~~~f~~e~ 892 (1636)
T KOG3616|consen 819 -GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDKAIQMYDKHGLDDDMIRLVEK-HHGDHLHDTHKHFAKEL 892 (1636)
T ss_pred -CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chHHHHHHHhhCcchHHHHHHHH-hChhhhhHHHHHHHHHH
Confidence 3444566677766777788888888877643211 1111 01112222221 1122 22444455666
Q ss_pred HccCcHHHHHHHHHHHH
Q 045820 187 CGVGKIHKALLLLFLMY 203 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~ 203 (225)
-..|+...|..-|-+.-
T Consensus 893 e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 893 EAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HhccChhHHHHHHHhhh
Confidence 67777777777665543
No 130
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.75 E-value=0.0047 Score=38.69 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=51.9
Q ss_pred hCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHH
Q 045820 50 ASPLKERIDIFNSIKKDGT-NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYT 127 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~ 127 (225)
.|+++.|+.+|+.+.+..- .++...+-.+-.++.+.|++ ++|..++++.. ..| +....-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y----------------~~A~~~~~~~~---~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY----------------EEAIELLQKLK---LDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH----------------HHHHHHHHCHT---HHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH----------------HHHHHHHHHhC---CCCCCHHHHH
Confidence 5889999999999987743 23455565577888555555 55555554411 122 223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 045820 128 AIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~ 148 (225)
.+-.+|.+.|++++|..++++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhc
Confidence 557889999999999999875
No 131
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.71 E-value=0.34 Score=41.86 Aligned_cols=124 Identities=10% Similarity=0.007 Sum_probs=85.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhc--------
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-------- 170 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~-------- 170 (225)
-+.|.+-+|..++++-.-.+ +-+...|-..|..=.+.|+.+.|..+..+..+. ++-+..-|.--|.|...
T Consensus 730 Ek~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHH
Confidence 45678888889888876553 347778999999999999999999888777653 34455556555533322
Q ss_pred ----CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 171 ----GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 171 ----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.+.-|..+.-++-..|-.-.++++|.+.|....+.+ +-+..+|..+.+-+.+.|
T Consensus 808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhC
Confidence 234455666666677777778888888888877643 223466666666666554
No 132
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.70 E-value=0.16 Score=42.74 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=90.0
Q ss_pred hhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045820 40 QAQRFVDKI-KASPLKERIDIFNSIKKDGTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117 (225)
Q Consensus 40 ~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~ 117 (225)
.+...++.+ |...++.|..+|...++.+..+ .+.+++++|.-+|. +|..-|.++|+.=...
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-----------------kD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-----------------KDKETAFRIFELGLKK 430 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-----------------CChhHHHHHHHHHHHh
Confidence 344555655 6677888888999988888777 77888888888865 4455666666653321
Q ss_pred CCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 045820 118 GLKPDVYT-YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 118 g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
-+|... -+..++-+...++-+.+..+|++....++.|+ -....|..+|+--...|+...+.
T Consensus 431 --f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~----------------ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 431 --FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD----------------KSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred --cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh----------------hhHHHHHHHHHHHHhcccHHHHH
Confidence 123323 35567777777888888888888877655422 23568888888888888888888
Q ss_pred HHHHHHHh
Q 045820 197 LLLFLMYE 204 (225)
Q Consensus 197 ~~~~~m~~ 204 (225)
++-+++..
T Consensus 493 ~lekR~~~ 500 (656)
T KOG1914|consen 493 KLEKRRFT 500 (656)
T ss_pred HHHHHHHH
Confidence 88777654
No 133
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.25 Score=41.94 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=58.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHH---------H
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLLQ---------R 167 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~~---------~ 167 (225)
.+.+..++|+..++ |..+ |..+-..=-..+-+.|++++|+.+|..+.+.+.. -+..--..++. +
T Consensus 90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 45667777777666 3333 2224444455677888899999999888766543 22222222221 1
Q ss_pred hhcCCCCCHHHHHHHHHH---HHccCcHHHHHHHHHHH
Q 045820 168 LEMGHIPRTITFNNVIQA---LCGVGKIHKALLLLFLM 202 (225)
Q Consensus 168 ~~~~~~p~~~~~~~li~~---~~~~g~~~~a~~~~~~m 202 (225)
......| ..+|..+-.. ++..|++.+|++++...
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1222333 3466665543 34589999999999887
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.67 E-value=0.17 Score=41.02 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=66.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH
Q 045820 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVY 124 (225)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ 124 (225)
.++..|++++|+..|++..+.. +-+...|..+-.+|.+.|+ +++|...+++..+. .| +..
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~----------------~~eAl~~~~~Al~l--~P~~~~ 71 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGN----------------FTEAVADANKAIEL--DPSLAK 71 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHh--CcCCHH
Confidence 3568899999999999998763 2356667777777755555 45555555555543 34 566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.|..+-.+|.+.|++++|...|++..+..
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 78888899999999999999999988754
No 135
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.64 E-value=0.15 Score=43.38 Aligned_cols=119 Identities=14% Similarity=0.058 Sum_probs=79.1
Q ss_pred CCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHH-------------------Hh-------cCCHHHHHHHHHHHh
Q 045820 67 GTNWSVSDFNDLLMALVMLN-----EQDTAVKFFSNH-------------------LM-------VGRVEEAYEMLMNVK 115 (225)
Q Consensus 67 g~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~-------------------~~-------~g~~~~a~~~~~~m~ 115 (225)
+.+.|...|...+.+..... +.+.|..+|++. .. ..++..+.+...+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34556677777777754432 255666666655 00 112233333333322
Q ss_pred hC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH
Q 045820 116 ND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194 (225)
Q Consensus 116 ~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 194 (225)
.. ....+...|.++--.+...|++++|...+++..... |+...|..+-..+...|+.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------------------ps~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------------------MSWLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------------CCHHHHHHHHHHHHHcCCHHH
Confidence 21 123345677777666667799999999999988765 777889999999999999999
Q ss_pred HHHHHHHHHhc
Q 045820 195 ALLLLFLMYEH 205 (225)
Q Consensus 195 a~~~~~~m~~~ 205 (225)
|.+.+++..+-
T Consensus 472 A~~~~~~A~~L 482 (517)
T PRK10153 472 AADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHhc
Confidence 99999988753
No 136
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.63 E-value=0.12 Score=37.12 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC-C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKP-D-VYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..|++++|...|++..+.+..+ + ...+..+-..|.+.|++++|...+.+..+.
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555555555554432222 2 457888899999999999999999998875
No 137
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.63 E-value=0.025 Score=33.67 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=54.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC-cHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG-KIHKALLLLF 200 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~ 200 (225)
+..+|..+-..+.+.|++++|+..|++..+..- -+...|..+-.+|.+.| ++++|++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-------------------~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-------------------NNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-------------------THHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------CCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 456788888899999999999999999988642 46678888889999999 7999999998
Q ss_pred HHHh
Q 045820 201 LMYE 204 (225)
Q Consensus 201 ~m~~ 204 (225)
...+
T Consensus 63 ~al~ 66 (69)
T PF13414_consen 63 KALK 66 (69)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 138
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.60 E-value=0.14 Score=36.03 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=72.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
...|++++|.++|.....- .| +..-|-.+-..+-..|++++|...|........ -|..
T Consensus 46 y~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-------------------ddp~ 104 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-------------------DAPQ 104 (157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------------------CCch
Confidence 5678888888888887753 45 445566777788888999999999999888764 5778
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhc-CCCCCH
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSR 211 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~ 211 (225)
.+-.+-.++...|+.+.|.+-|+..+.. +-.|..
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence 8888899999999999999999988763 444443
No 139
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.56 E-value=0.17 Score=39.82 Aligned_cols=132 Identities=17% Similarity=0.255 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHhHH
Q 045820 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVM--LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG---LKPDVYTYT 127 (225)
Q Consensus 53 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~ 127 (225)
+++.+.+++.|++.|++-+..+|-+....... ..+++ ....+|..+|+.|++.. ..++-..+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~------------~~~~ra~~iy~~mKk~H~fLTs~~D~~~a 145 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYD------------EIIQRAKEIYKEMKKKHPFLTSPEDYPFA 145 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHH------------HHHHHHHHHHHHHHHhCccccCccchhHH
Confidence 55566788999999999888777664444433 22222 34577888999998754 235667777
Q ss_pred HHHHHHHhcCC----HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc-Cc--HHHHHHHHH
Q 045820 128 AIMDGFCKVGR----SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV-GK--IHKALLLLF 200 (225)
Q Consensus 128 ~ll~~~~~~g~----~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~-g~--~~~a~~~~~ 200 (225)
++|.. ..++ .+.++.+|+.+.+.|+..+ |..-+-+-|.++... .+ +.++.++++
T Consensus 146 ~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kg-----------------n~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 146 ALLAM--TSEDVEELAERMEQCYQKLADAGFKKG-----------------NDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred HHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCC-----------------cHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 77655 3333 4667888999998887632 222222223333221 11 346677777
Q ss_pred HHHhcCCCCCHHHHH
Q 045820 201 LMYEHGKIPSRTSHD 215 (225)
Q Consensus 201 ~m~~~g~~p~~~~~~ 215 (225)
.+.+.|+++....|.
T Consensus 207 ~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 207 ALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHcCCcccccccc
Confidence 777777776555544
No 140
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.56 E-value=0.14 Score=36.60 Aligned_cols=84 Identities=19% Similarity=0.116 Sum_probs=54.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKP--DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
..|++++|...|++.......| ...+|..+-..|...|++++|...+++..+.. | ....
T Consensus 47 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~-----------------~~~~ 107 (168)
T CHL00033 47 SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--P-----------------FLPQ 107 (168)
T ss_pred HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-----------------CcHH
Confidence 3455566666666655432222 23578888999999999999999999988652 2 1223
Q ss_pred HHHHHHHHHH-------ccCcHHHHHHHHHHH
Q 045820 178 TFNNVIQALC-------GVGKIHKALLLLFLM 202 (225)
Q Consensus 178 ~~~~li~~~~-------~~g~~~~a~~~~~~m 202 (225)
++..+...+. ..|+++.|...+++-
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 3444444444 788888776666554
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.55 E-value=0.19 Score=44.55 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=93.5
Q ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045820 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117 (225)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~ 117 (225)
+.-..++...+.++++..|+...+.+.+. .|| ..|..++.++.. .+.|..++|..+++....-
T Consensus 10 err~rpi~d~ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl--------------~r~gk~~ea~~~Le~~~~~ 72 (932)
T KOG2053|consen 10 ERRLRPIYDLLDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSL--------------FRLGKGDEALKLLEALYGL 72 (932)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHH--------------HHhcCchhHHHHHhhhccC
Confidence 34467888899999999999999887655 233 346667777755 5678888888888887765
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH
Q 045820 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194 (225)
Q Consensus 118 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 194 (225)
+.. |..|...+-..|.+.++.++|..+|++..... |+......+..+|++.+++.+
T Consensus 73 ~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------------------P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 73 KGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--------------------PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred CCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------------------CcHHHHHHHHHHHHHHHHHHH
Confidence 443 89999999999999999999999999987643 777777777888888777654
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.50 E-value=0.022 Score=33.50 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=48.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
-..+.+.|++++|...|++..+..- -+...+..+-.++...|++++|..+|++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P-------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDP-------------------DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCST-------------------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578899999999999999998752 36778888899999999999999999999764
No 143
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.48 E-value=0.25 Score=37.54 Aligned_cols=89 Identities=21% Similarity=0.191 Sum_probs=75.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
.+.|++..|...|.+...- -++|-.+||.+--+|-+.|+++.|..-|.+..+.-. -+...
T Consensus 111 ~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-------------------~~p~~ 170 (257)
T COG5010 111 IRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-------------------NEPSI 170 (257)
T ss_pred HHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-------------------CCchh
Confidence 6778888888888887753 367899999999999999999999999999887543 45677
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCC
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGK 207 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 207 (225)
+|.|--.|.-.|+.+.|..++......+.
T Consensus 171 ~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 171 ANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 88899999999999999999999887653
No 144
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.47 E-value=0.22 Score=36.76 Aligned_cols=124 Identities=6% Similarity=-0.011 Sum_probs=83.0
Q ss_pred HHHHhcCCHHHHHHHHHHH-------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 80 MALVMLNEQDTAVKFFSNH-------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~-------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..|...|+++.+..-.+.+ ...++.+++...+....+.. +.|...|..+-..|...|++++|...|++..+.
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l 102 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL 102 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455555555544433332 12455566666666655432 457888999999999999999999999998876
Q ss_pred CCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHccCc--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA-LCGVGK--IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 153 g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
.- -+...+..+-.+ +...|+ .++|.+++++..+..-. +...+..+-..+.+.
T Consensus 103 ~P-------------------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~ 157 (198)
T PRK10370 103 RG-------------------ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQ 157 (198)
T ss_pred CC-------------------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHc
Confidence 53 366777777776 466676 59999999999975422 445555554444443
No 145
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.46 E-value=0.47 Score=41.05 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=66.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH------------
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------------ 166 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~------------ 166 (225)
-..|..++-..+|.+.... ++-....|-...+-+...|+...|..++.+..+..-- +...+-+.++
T Consensus 561 k~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHH
Confidence 4457777777777776654 2234445666666677777777777777776654311 2222222220
Q ss_pred ---HhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 167 ---RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 167 ---~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
.......|+...|.--+.----.+++++|.+++++..+. -|+..-
T Consensus 639 ~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~K 686 (913)
T KOG0495|consen 639 DLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHK 686 (913)
T ss_pred HHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHH
Confidence 112234577788877777777778888888888877653 455443
No 146
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.46 E-value=0.17 Score=39.62 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=85.7
Q ss_pred hHhhhcCCCCCChhhcchhhcCcch---hhhHHHHHH-----HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRS---LQAQRFVDK-----IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~l~~~-----~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
..++...-|.+.+++|..+|.+... .++...+.+ .-.++.+.|..+|+...+. +.-+...|...++.+.+.
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHh
Confidence 3455666667778888888877543 234444432 2367777899999998776 566778899999999777
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 045820 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP---DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162 (225)
Q Consensus 86 ~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 162 (225)
++.+.|..+|+. .... +.+ ....|...+.-=.+.|+++.+..+..++.+. -|+...+.
T Consensus 84 ~d~~~aR~lfer----------------~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~ 144 (280)
T PF05843_consen 84 NDINNARALFER----------------AISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLE 144 (280)
T ss_dssp T-HHHHHHHHHH----------------HCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHH
T ss_pred CcHHHHHHHHHH----------------HHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHH
Confidence 766666555554 4432 222 2247888888889999999999999988875 33444444
Q ss_pred HHH
Q 045820 163 QLL 165 (225)
Q Consensus 163 ~l~ 165 (225)
.+.
T Consensus 145 ~f~ 147 (280)
T PF05843_consen 145 LFS 147 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 147
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.45 E-value=0.15 Score=40.61 Aligned_cols=51 Identities=8% Similarity=0.011 Sum_probs=28.3
Q ss_pred hhhcCCCCCChhhcchhhcCcchhh------------hHHHHHHHHhCCHHHHHHHHHHHHhc
Q 045820 16 LVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVDKIKASPLKERIDIFNSIKKD 66 (225)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~~~~~~~~~~a~~~~~~m~~~ 66 (225)
+...-...|+..-|..++..=+... -..+..++++|+++....++-.|++.
T Consensus 6 IA~~A~~~GR~~LA~~LL~~Ep~~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~~ 68 (319)
T PF04840_consen 6 IARKAYEEGRPKLATKLLELEPRASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKRK 68 (319)
T ss_pred HHHHHHHcChHHHHHHHHHcCCChHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHHh
Confidence 3344445666666666554411111 12355567888888777776666543
No 148
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.027 Score=34.49 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=52.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
.+|+.+-..|.+.|++++|+..|++..+.. ..++. |+ ..+++.+-.+|...|++++|.++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH---------------PDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH---------------HHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 468999999999999999999999887541 11111 33 5788999999999999999999999
Q ss_pred HHHh
Q 045820 201 LMYE 204 (225)
Q Consensus 201 ~m~~ 204 (225)
+..+
T Consensus 71 ~al~ 74 (78)
T PF13424_consen 71 KALD 74 (78)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
No 149
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.39 E-value=0.56 Score=40.48 Aligned_cols=154 Identities=11% Similarity=0.131 Sum_probs=103.2
Q ss_pred CCCCchhhHhhhcCCCCCChhhcchhhcCcchhhhHHH---HH----H----HHhCCHHHHHHHHHHHHhc---------
Q 045820 7 NSPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRF---VD----K----IKASPLKERIDIFNSIKKD--------- 66 (225)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l---~~----~----~~~~~~~~a~~~~~~m~~~--------- 66 (225)
.+|...+..+.+-|-+.|+.+.|..+|.+.....|..+ -. + ++..+++.|+.+.++-...
T Consensus 384 Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 384 GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY 463 (835)
T ss_pred CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence 34445555777889999999999999998766654432 22 1 2667788888876654211
Q ss_pred -C-C------CCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCC
Q 045820 67 -G-T------NWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLK 120 (225)
Q Consensus 67 -g-~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~ 120 (225)
| . .-+...|+..++.--..|-++....+|+.+ -.+.-+++++++|++-..-=--
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 1 1 124566777777777778899999999888 3456667777777654432223
Q ss_pred CCHH-hHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCccHHHH
Q 045820 121 PDVY-TYTAIMDGFCKV---GRSNEAMELLNEAIERGVTQNVVTL 161 (225)
Q Consensus 121 p~~~-~~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~ 161 (225)
|++. .||.-+.-+.+. .+++.|..+|++..+ |++|...-+
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKt 587 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKT 587 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHH
Confidence 5553 588877776553 268899999999988 777655433
No 150
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.54 Score=39.99 Aligned_cols=119 Identities=14% Similarity=0.089 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCccHHHHHHHHH--------
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN--------EAIERGVTQNVVTLIQLLQ-------- 166 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~--------~m~~~g~~p~~~t~~~l~~-------- 166 (225)
...++.+++...-+....-....-=+++......|+++.|.+++. ...+.+..|..+.+...+.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 455555555555443222223444556666778889999999888 7777788887776665551
Q ss_pred ----------HhhcCCCCCHHHHHHHH----HHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 167 ----------RLEMGHIPRTITFNNVI----QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 167 ----------~~~~~~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
..... .+....-+.++ .---++|+-++|..+++++.+.. .+|..+...++.+|++
T Consensus 436 a~~vl~~Ai~~~~~~-~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQ-QTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHHHHHHHHHHHHHh-cccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHh
Confidence 11111 11112223333 33346799999999999999743 5789999999999986
No 151
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.33 E-value=0.38 Score=39.75 Aligned_cols=136 Identities=14% Similarity=0.239 Sum_probs=93.5
Q ss_pred HHHHH-HhCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 44 FVDKI-KASPLKERIDIFNSIKKDG-TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 44 l~~~~-~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
.++++ +...++.|..+|...++.| +.+++.+++++|..++. |+...|..+|+.=... -|
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-----------------~d~~ta~~ifelGl~~--f~ 463 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-----------------GDRATAYNIFELGLLK--FP 463 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-----------------CCcchHHHHHHHHHHh--CC
Confidence 44444 5667888888888888888 67788888888887754 4555566666553322 34
Q ss_pred CHHhH-HHHHHHHHhcCCHHHHHHHHHHHH----HcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 045820 122 DVYTY-TAIMDGFCKVGRSNEAMELLNEAI----ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 122 ~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
|...| +-.+.-+.+.++-+.|..+|+.-. +... -..|..+|+--...|+...+.
T Consensus 464 d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~---------------------k~iy~kmi~YEs~~G~lN~v~ 522 (660)
T COG5107 464 DSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL---------------------KRIYDKMIEYESMVGSLNNVY 522 (660)
T ss_pred CchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh---------------------hHHHHHHHHHHHhhcchHHHH
Confidence 54443 556677788888888888888443 2222 368899999889999998888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 197 LLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 197 ~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
.+-+.|.+ +.|...+-..+...|
T Consensus 523 sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 523 SLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred hHHHHHHH--HcCcHhHHHHHHHHH
Confidence 88888865 356655555555444
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.29 E-value=0.17 Score=33.37 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=64.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045820 42 QRFVDKIKASPLKERIDIFNSIKKDGT--NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 119 (225)
.......+.|++++|...|+.+.+..- ......+..+..++.+.|+ ++.|...|+.......
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK----------------YADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc----------------HHHHHHHHHHHHHHCC
Confidence 334445688999999999999976521 1123455557777755554 4555555555544221
Q ss_pred --CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 120 --KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 120 --~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
......+..+..++.+.|+.++|...+++..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 1124567777888999999999999999998874
No 153
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.26 E-value=0.056 Score=32.50 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=53.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
..|.+.+++++|..+++.+.+..- .+...|...-.++.+.|++++|.+.|+...+. .|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-------------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-------------------DDPELWLQRARCLFQLGRYEEALEDLERALEL--SPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-------------------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCC
Confidence 578899999999999999998743 46677888889999999999999999999975 355
Q ss_pred HHHHHH
Q 045820 211 RTSHDM 216 (225)
Q Consensus 211 ~~~~~~ 216 (225)
......
T Consensus 62 ~~~~~~ 67 (73)
T PF13371_consen 62 DPDARA 67 (73)
T ss_pred cHHHHH
Confidence 554443
No 154
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.24 E-value=0.18 Score=44.14 Aligned_cols=75 Identities=24% Similarity=0.244 Sum_probs=47.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
.....|.+|+.+++.+.+... -.--|.-+..-|+..|+++.|+++|.+. ..
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------------------------~~ 793 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------------------------DL 793 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------------------------ch
Confidence 445666777777776665422 2223666677777777777777777542 13
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHH
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
++--|..|.++|+|+.|.++-.+.
T Consensus 794 ~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 794 FKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hHHHHHHHhccccHHHHHHHHHHh
Confidence 455567777777777777766554
No 155
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.24 E-value=0.47 Score=38.10 Aligned_cols=185 Identities=15% Similarity=0.079 Sum_probs=108.2
Q ss_pred cCCCCCChhhcchhhcCcchhh---hHHHH---HHH----HhCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCC
Q 045820 19 SPSRSPSAAESLDLKENPRSLQ---AQRFV---DKI----KASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNE 87 (225)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~---~~~l~---~~~----~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~ 87 (225)
.+...|++++|.+.+.+..... ...+. ... ..+....+...++. .....|+ ......+-..+...|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence 4566778888877766522111 11111 111 23444555555443 1122232 2333445567778888
Q ss_pred HHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCC-CCCH--HhHHHHHHHHHhcCCHHHHHHHH
Q 045820 88 QDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGL-KPDV--YTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 88 ~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
++.|...+++. ...|++++|...+++..+... .|+. ..|-.+...+...|++++|..++
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88888888776 667999999999988776422 2333 34567888899999999999999
Q ss_pred HHHHHcCC-CccHHHH-HH-H-H-H---------------Hhhc--CCCC-CHHHH--HHHHHHHHccCcHHHHHHHHHH
Q 045820 147 NEAIERGV-TQNVVTL-IQ-L-L-Q---------------RLEM--GHIP-RTITF--NNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 147 ~~m~~~g~-~p~~~t~-~~-l-~-~---------------~~~~--~~~p-~~~~~--~~li~~~~~~g~~~~a~~~~~~ 201 (225)
++...... .+..... +. . + . .... ...| ....+ .....++...|+.++|..+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99864332 2222222 22 1 1 0 0110 0001 11122 2566777889999999999999
Q ss_pred HHhc
Q 045820 202 MYEH 205 (225)
Q Consensus 202 m~~~ 205 (225)
+...
T Consensus 290 l~~~ 293 (355)
T cd05804 290 LKGR 293 (355)
T ss_pred HHHH
Confidence 8763
No 156
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.22 E-value=0.11 Score=45.80 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=65.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------------------Hhc
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------------------------LMV 101 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------------------~~~ 101 (225)
.-|+.+.|.+-.+.++ +..+|..|-.+|.+..++|-|.-.+-.| ...
T Consensus 740 tiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred EeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 5588888877776666 5678999999999999999998888777 556
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
|.+++|+.+|.+.++ |..+=+-|...|++++|+++-+.
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhh
Confidence 777888888877764 44555667777888888877654
No 157
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.21 E-value=0.7 Score=39.78 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=50.8
Q ss_pred cCCCCCChhhcchhhcCcchhhhHHHH-----H--HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCHHH
Q 045820 19 SPSRSPSAAESLDLKENPRSLQAQRFV-----D--KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV-MLNEQDT 90 (225)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~l~-----~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~~~~~~ 90 (225)
-...+|..++|++.+......-.+.+- . ..+.+++++|..++..+... .||...|.-.+..+. +..+.-+
T Consensus 194 i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHH
Confidence 355677788888877765544433221 1 34899999999999999887 677776666555444 4444333
Q ss_pred HH-HHHHHH
Q 045820 91 AV-KFFSNH 98 (225)
Q Consensus 91 a~-~~~~~~ 98 (225)
+. .+|...
T Consensus 272 ~lk~ly~~l 280 (700)
T KOG1156|consen 272 ALKALYAIL 280 (700)
T ss_pred HHHHHHHHH
Confidence 33 666655
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.03 E-value=0.045 Score=32.16 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=43.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
...|++++|.+.|++..+.. +-+...+..+-..+.+.|++++|...|++..+.
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788899999999988764 226778899999999999999999999998764
No 159
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.02 E-value=0.59 Score=39.88 Aligned_cols=101 Identities=13% Similarity=0.214 Sum_probs=79.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
..|++++|+..++.-.++ .|+ +..|..--..+-+.|++++|.+.++.. .++|++++|.+
T Consensus 206 ~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred HhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 789999999999988877 444 666888888899999999999988766 88999999999
Q ss_pred HHHHHhhCCCCC--CHH----hH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 110 MLMNVKNDGLKP--DVY----TY--TAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 110 ~~~~m~~~g~~p--~~~----~~--~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
++....+.+..| |.. .| .-.-.+|.+.|++..|+.-|....+
T Consensus 284 ~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 284 TASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999988766544 222 12 4467889999999888777655543
No 160
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.98 E-value=0.89 Score=39.16 Aligned_cols=168 Identities=14% Similarity=0.105 Sum_probs=115.9
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
..|+.++|....+.=.+..++ +.+.|+.+=-.+-...++++|.+.|... ++.++++.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 778889999888776655433 6667776666666667889998888665 666777777766
Q ss_pred HHHHhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHH-------HHhhcCC---------
Q 045820 111 LMNVKNDGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVTLIQLL-------QRLEMGH--------- 172 (225)
Q Consensus 111 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~l~-------~~~~~~~--------- 172 (225)
-.+..+ ..|+ ...|-.+.-++--.|+...|..++++..+.. ..|+...|--.. .+.+.|.
T Consensus 132 r~~LLq--l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 132 RNQLLQ--LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 666654 2454 4468888889999999999999999998765 356666665443 1222221
Q ss_pred --C---CCHH-HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 173 --I---PRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 173 --~---p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
+ .|-. .-.+-..-+.+.+++++|..++..+... .||..-|...+..+
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 1 1222 2233345567889999999999999875 48887777665443
No 161
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.97 E-value=0.83 Score=38.72 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHH
Q 045820 104 VEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182 (225)
Q Consensus 104 ~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~l 182 (225)
+.+..++|-++.. .+.++|...+..|--.|--.|++++|.++|+..... +| -|..+||-|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~P-----------------nd~~lWNRL 470 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KP-----------------NDYLLWNRL 470 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CC-----------------chHHHHHHh
Confidence 4455566666643 343456666677766777788888888888877753 22 456678888
Q ss_pred HHHHHccCcHHHHHHHHHHHHh
Q 045820 183 IQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~ 204 (225)
=..++...+.++|+.-|++..+
T Consensus 471 GAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHh
Confidence 8888888888888888877765
No 162
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=1 Score=41.08 Aligned_cols=199 Identities=11% Similarity=0.074 Sum_probs=129.5
Q ss_pred CchhhHhhhcCCCCCChhhcchhhcCcc-hhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 10 TPFSVLLVDSPSRSPSAAESLDLKENPR-SLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
+..+..+.++-.+.|.+.+|++.+-+.+ ...|...+... +.|.+++....+..-++..-.|.. =+.||-+|++.++
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNR 1181 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhch
Confidence 4566788888899999999998887654 44566677755 889999988887766666555554 4679999999999
Q ss_pred HHHHHHHHHH------------HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 88 QDTAVKFFSN------------HLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 88 ~~~a~~~~~~------------~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
+.+..+++.. ....+.++.|.-+|. ++..|.-+-..+...|+++.|.+.-++..+...
T Consensus 1182 l~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~kt- 1251 (1666)
T KOG0985|consen 1182 LTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKT- 1251 (1666)
T ss_pred HHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhH-
Confidence 8887776521 144455555555443 445677888888888888888776554332211
Q ss_pred ccHHHHHHH-------HHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhh
Q 045820 156 QNVVTLIQL-------LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK-IPSRTSHDMLIKKLD 222 (225)
Q Consensus 156 p~~~t~~~l-------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~ 222 (225)
+-.+.|.++ .+++...+.....-..-++.-|-..|-+++-+.+++.-. |+ +.....|+-|--.|+
T Consensus 1252 WK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHH
Confidence 111111111 144444455566667888899999999998877776432 22 223345555544444
No 163
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.95 E-value=0.058 Score=32.97 Aligned_cols=68 Identities=21% Similarity=0.422 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 73 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
.+|+.+-..|...|++++|...|++ |+++.+.... -.|+ ..+++.+-..|.+.|++++|+..+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~---------al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEK---------ALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH---------HHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH---------HHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678888888888888888877764 3444333322 1244 56799999999999999999999988654
No 164
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.85 E-value=0.05 Score=45.29 Aligned_cols=122 Identities=13% Similarity=0.150 Sum_probs=78.5
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 90 (225)
.....++.-+.+.|.++.|+++...++. .+--+++.|+++.|.++-++. .+...|..|-+...++|+++.
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~----rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDH----RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHH----HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHH----HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHH
Confidence 3344556666666666666666665432 222345777777777764433 367789999999999999999
Q ss_pred HHHHHHHH----------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 91 AVKFFSNH----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 91 a~~~~~~~----------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
|.+.|.+. ...|+.+...++.+.....| -+|....++.-.|+.++..+++.+
T Consensus 366 Ae~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 366 AEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99988765 55677766666666655554 266666677777877777766654
No 165
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=95.84 E-value=0.34 Score=33.69 Aligned_cols=97 Identities=10% Similarity=0.116 Sum_probs=74.1
Q ss_pred HhhCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCc
Q 045820 114 VKNDGLKPDVYT--YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191 (225)
Q Consensus 114 m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~ 191 (225)
|.+.+..+++.+ .|+++.-.+..+++.....+++.+.... ++..+ -..+..+|.+++.+.++..-
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~--~~~~~-----------~~~~~ssf~~if~SlsnSsS 94 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLN--TDNII-----------GWLDNSSFHIIFKSLSNSSS 94 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhh--HHHHh-----------hhcccchHHHHHHHHccChH
Confidence 556667777654 7999999999999999999999883221 11000 11566789999999977766
Q ss_pred -HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 192 -IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 192 -~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
---+..+|+-|.+.+.+++..-|..+++++.+
T Consensus 95 aK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 95 AKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 44577889999988899999999999999865
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.79 E-value=0.34 Score=32.64 Aligned_cols=104 Identities=22% Similarity=0.215 Sum_probs=73.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPD--VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
..|+.++|..+|++-...|...+ ...+=.+-+.+...|++++|..++++....- |+.. -+..
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~--------------~~~~ 76 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDE--------------LNAA 76 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcc--------------ccHH
Confidence 45888999999999988887664 3356667788999999999999999887642 1100 1122
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
....+..++...|+.++|++.+-.... ++...|..=|..|.+
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 223334577788999999998877654 455578777777764
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.64 E-value=0.71 Score=35.28 Aligned_cols=60 Identities=13% Similarity=-0.001 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHH
Q 045820 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDF---NDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
...+..-...+..|++++|...|+.+...--.. ...- -.+..++-+.++++.|...+++.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334566667789999999999999998763222 2222 23445665666666555555544
No 168
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.5 Score=37.92 Aligned_cols=135 Identities=11% Similarity=0.174 Sum_probs=84.1
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh-hHHHHHHH----------HhCCHHHHHHHHHHHHhcCCCCChhh-HHHHHHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ-AQRFVDKI----------KASPLKERIDIFNSIKKDGTNWSVSD-FNDLLMAL 82 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~l~~~~----------~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~ 82 (225)
.|+--|.+.+++++|..+....+..+ ++-++... ...+++.|...|...-.++..-|... --++-..+
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 45567889999999999988866554 33333322 12235556666655545544333222 23344444
Q ss_pred HhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHH-HHHHHHhcCCHHHHH
Q 045820 83 VMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTA-IMDGFCKVGRSNEAM 143 (225)
Q Consensus 83 ~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~ 143 (225)
.-.-++|++.-.++.+ +..|.+.+|+++|-++....++ |-.+|-+ +.++|.+.++.+-|.
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHH
Confidence 4445566666555444 6789999999999888754443 5556654 557789999999887
Q ss_pred HHHHHHH
Q 045820 144 ELLNEAI 150 (225)
Q Consensus 144 ~~~~~m~ 150 (225)
+++-++.
T Consensus 449 ~~~lk~~ 455 (557)
T KOG3785|consen 449 DMMLKTN 455 (557)
T ss_pred HHHHhcC
Confidence 7765543
No 169
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.50 E-value=0.26 Score=40.74 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=28.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVY----TYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
...|++++|...|++..+ +.|+.. +|..+-.+|.+.|+.++|...+++..+
T Consensus 86 ~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 86 FSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666655443 245422 355555566666666666666665554
No 170
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.40 E-value=0.75 Score=41.73 Aligned_cols=160 Identities=8% Similarity=0.029 Sum_probs=101.6
Q ss_pred hHHHHHHH-HhCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHhh
Q 045820 41 AQRFVDKI-KASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQDTAVKF--FSNHLMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 41 ~~~l~~~~-~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~--~~~~~~~g~~~~a~~~~~~m~~ 116 (225)
+..++... ..+++++|..+.+.-.+. .-.+...-+..+ .+.+.++.+.+..+ .+......++.-...++..|.+
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~ 111 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILL 111 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHh
Confidence 34566666 889999999999855544 222233333333 55566666665554 2222555667777777777776
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHccCcHHHH
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM-GHIPRTITFNNVIQALCGVGKIHKA 195 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a 195 (225)
.+ -+...+-.+..+|-+.|+.+++..+|+++.+.. .-|+.+.|.+--.++. .+.--...+.-.+..|....++.++
T Consensus 112 ~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~ 188 (906)
T PRK14720 112 YG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGI 188 (906)
T ss_pred hh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHH
Confidence 43 355688888999999999999999999999887 3344455544422221 2222334455555666666677777
Q ss_pred HHHHHHHHhc
Q 045820 196 LLLLFLMYEH 205 (225)
Q Consensus 196 ~~~~~~m~~~ 205 (225)
.++|.++...
T Consensus 189 ~e~W~k~~~~ 198 (906)
T PRK14720 189 EEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHhc
Confidence 7777777654
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.39 E-value=0.46 Score=37.00 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=80.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
.+.+++.+|...|.+... +.| |.+-|..=--+|++.|.++.|.+=-+......- --..
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-------------------~ysk 150 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-------------------HYSK 150 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-------------------HHHH
Confidence 788999999999999886 455 666777788899999999999877766555321 2357
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
+|..|=.+|.-.|++++|++.|+...+ +-|+-.+|..=|+.
T Consensus 151 ay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 151 AYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 899999999999999999999998876 67888888766654
No 172
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.37 E-value=2 Score=38.57 Aligned_cols=68 Identities=21% Similarity=0.163 Sum_probs=34.2
Q ss_pred CCCCCChhhcchhhcCcc------hhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 045820 20 PSRSPSAAESLDLKENPR------SLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89 (225)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~------~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 89 (225)
+.|.|+.++|..+++... ..+.+.+..++ +.++.++|..+|++..+. .|+..-...+..+|.+.+++.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHH
Confidence 345555555555554422 11223333333 456666666666655544 444555555556666655543
No 173
>PLN02789 farnesyltranstransferase
Probab=95.26 E-value=1.2 Score=35.57 Aligned_cols=48 Identities=4% Similarity=-0.116 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHcc----CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 175 RTITFNNVIQALCGV----GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 175 ~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
|...|+.+-..+... +...+|.+.+.+..+.+ ..+......|++.|++
T Consensus 216 N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 216 NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 455677666666663 33455777777766533 3356677777777765
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.23 E-value=0.54 Score=37.50 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=58.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
++..|+...|..+-.+.+ -|+..-|-..|.++++.++| ++-.+.-. . +-++.-|
T Consensus 187 li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w----------------~eL~~fa~----s--kKsPIGy 240 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDW----------------DELEKFAK----S--KKSPIGY 240 (319)
T ss_pred HHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCH----------------HHHHHHHh----C--CCCCCCh
Confidence 335555555555543332 24555555566666444444 43333211 1 2244778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 198 (225)
-.++.+|.+.|+..+|.....+ + ++..-+..|.+.|++.+|.+.
T Consensus 241 epFv~~~~~~~~~~eA~~yI~k-----~-----------------------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 241 EPFVEACLKYGNKKEASKYIPK-----I-----------------------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh-----C-----------------------ChHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888877766 2 224567888888888888655
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.99 E-value=0.76 Score=35.59 Aligned_cols=88 Identities=13% Similarity=0.035 Sum_probs=65.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDV----YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~ 175 (225)
+.|++++|...|+.+.+.. |+. ..+--+-.+|...|++++|...|..+.+.--. . ...
T Consensus 155 ~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--s--------------~~~ 216 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--S--------------PKA 216 (263)
T ss_pred hcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--C--------------cch
Confidence 4588999999999988643 432 35666778899999999999999999864211 0 012
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
...+-.+...+...|+.++|..+|++..+.
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444566777899999999999999875
No 176
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.98 E-value=1 Score=35.10 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=75.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 69 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
.+....|-..+.-+.+.-.+....++.+.....|+.+.+...++++.... +-+...|-.+|.+|.+.|+...|...|++
T Consensus 134 d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 134 DDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 44467788888888777777777777888899999999999999998753 34889999999999999999999999999
Q ss_pred HHHc-----CCCccHHHHHHH
Q 045820 149 AIER-----GVTQNVVTLIQL 164 (225)
Q Consensus 149 m~~~-----g~~p~~~t~~~l 164 (225)
+.+. |+.|...+....
T Consensus 213 l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 213 LKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHhhhhcCCCccHHHHHHH
Confidence 8763 555544444333
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.92 E-value=0.71 Score=31.10 Aligned_cols=84 Identities=25% Similarity=0.310 Sum_probs=47.5
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSV--SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD---- 122 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~---- 122 (225)
..|+.++|+.+|++-...|..... ..+-.+-+.+... |++++|..+|++.... .|+
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L----------------G~~deA~~~L~~~~~~--~p~~~~~ 74 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL----------------GRYDEALALLEEALEE--FPDDELN 74 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHH--CCCcccc
Confidence 678888899999888887765442 2233344444333 4555555555554432 122
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
......+-.++...|+.++|...+-...
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111222336677788888877765543
No 178
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.89 E-value=2.5 Score=37.26 Aligned_cols=31 Identities=6% Similarity=-0.009 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+...|-.+-..+-+.|+.+.|.+.|.-..+
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 4677888898999999999999988887653
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.80 E-value=1 Score=32.27 Aligned_cols=67 Identities=19% Similarity=0.121 Sum_probs=53.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
....|..+-..+.+.|++++|...|++..+....+ ++ ...|..+...+.+.|++++|...++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-----------------NDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-----------------chHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44567778888899999999999999988754321 11 3578888899999999999999999
Q ss_pred HHHhc
Q 045820 201 LMYEH 205 (225)
Q Consensus 201 ~m~~~ 205 (225)
+..+.
T Consensus 97 ~al~~ 101 (172)
T PRK02603 97 QALEL 101 (172)
T ss_pred HHHHh
Confidence 98874
No 180
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=2.4 Score=36.14 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=63.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
.+.+..+.|.+.|.+... +.| |+...+-+--..-+.+.+.+|...|...... ++........-..
T Consensus 391 ~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------IKSVLNEKIFWEP 456 (611)
T ss_pred HHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------hhhccccccchhH
Confidence 445666677766665543 455 5555555555555566677777777665411 0000000111334
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
+++.|-..|.+.+..++|+..++.-.... +-|..|+.++--
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~ 497 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGY 497 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHH
Confidence 67888899999999999999999988642 335555555433
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.71 E-value=1.4 Score=33.63 Aligned_cols=170 Identities=10% Similarity=0.022 Sum_probs=102.0
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh----hH------HHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ----AQ------RFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~------~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.....+...|++++|.+.|++..... +. ......+.++++.|...|++..+..-.-...-|...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 34455667899999998888743221 11 112234899999999999998776322223345555555442
Q ss_pred --c---------------CCHH---HHHHHHHHH----HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHH
Q 045820 85 --L---------------NEQD---TAVKFFSNH----LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN 140 (225)
Q Consensus 85 --~---------------~~~~---~a~~~~~~~----~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 140 (225)
. .|.. .|...|+.+ ....-..+|...+..+.+. .-..-+ .+.+-|-+.|.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y~~~~~y~ 192 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYYTKRGAYV 192 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcCchH
Confidence 1 1222 333334433 3344445555544444321 111112 4566688999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 141 EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 141 ~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.|..=++.+.+.--. -.......-.++.+|...|..++|..+...+..
T Consensus 193 AA~~r~~~v~~~Yp~----------------t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 193 AVVNRVEQMLRDYPD----------------TQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHCCC----------------CchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 999888888864210 013455667888999999999999888776653
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.66 E-value=0.82 Score=32.55 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=65.2
Q ss_pred HHHHHHHHh-hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045820 107 AYEMLMNVK-NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185 (225)
Q Consensus 107 a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~ 185 (225)
+...+..+. ..+..-....|..+...+...|++++|+..|++.......|. ....+|..+-..
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----------------~~~~~~~~lg~~ 81 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY----------------DRSYILYNIGLI 81 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch----------------hhHHHHHHHHHH
Confidence 334444442 333333456678888888899999999999999886532210 123578888899
Q ss_pred HHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
|...|++++|...++...+.. +....++..+...|
T Consensus 82 ~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~ 116 (168)
T CHL00033 82 HTSNGEHTKALEYYFQALERN-PFLPQALNNMAVIC 116 (168)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 999999999999999988642 22234444444444
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.60 E-value=0.33 Score=28.67 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=39.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG-RSNEAMELLNEAIER 152 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~ 152 (225)
...|++++|...|++..+.. +-+...|..+-.+|.+.| ++++|...+++..+.
T Consensus 14 ~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 14 FQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34556666666666666532 236678999999999999 799999999987753
No 184
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.44 E-value=3.9 Score=37.49 Aligned_cols=142 Identities=12% Similarity=0.028 Sum_probs=86.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------Hh
Q 045820 49 KASPLKERIDIFNSIKKDGTNWS----VSDFNDLLMALVMLNEQDTAVKFFSNH------------------------LM 100 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------~~ 100 (225)
..|++++|...+++..+.--..+ ....+.+-..+...|+++.|...+.+. ..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78899999999887655311111 123444555566788888887776554 34
Q ss_pred cCCHHHHHHHHHHHhh----CCCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCC
Q 045820 101 VGRVEEAYEMLMNVKN----DGLK--P-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~----~g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 173 (225)
.|++++|...+++..+ .|.. + ....+..+-..+...|++++|...+.+.....-. .+..
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~--------------~~~~ 609 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN--------------YQPQ 609 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc--------------cCch
Confidence 5778888777766543 2211 1 2233444455566678888888887776543111 0000
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.....+..+...+...|+.++|.+.+.+...
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1123444556677788999999988888754
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.34 E-value=0.28 Score=29.33 Aligned_cols=54 Identities=28% Similarity=0.259 Sum_probs=43.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+.+++++|.++++.+...+ +.+...|...-..+.+.|++++|...|++..+.+
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45677888888888887753 2366778888899999999999999999998754
No 186
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.31 E-value=3 Score=35.53 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHh------------hc
Q 045820 105 EEAYEMLMNVKND-GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NVVTLIQLLQRL------------EM 170 (225)
Q Consensus 105 ~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l~~~~------------~~ 170 (225)
+.....+++.... .+.|+ .+|-..|+.-.|..-++.|..+|.+..+.+..+ ++.+++++|+-. +.
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 3344444444432 23333 467778888888888999999999999998888 777888888332 22
Q ss_pred CC--CCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH--HHHHHHHH
Q 045820 171 GH--IPR-TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR--TSHDMLIK 219 (225)
Q Consensus 171 ~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~ 219 (225)
|+ -+| ..--...++-+...|+-..|..+|+.....++.||. .+|..+|+
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 21 123 233355556666667777777888888777655544 56666654
No 187
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.31 E-value=1.2 Score=37.31 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=85.5
Q ss_pred HHHHhCCHHHHHHHHH--HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhh
Q 045820 46 DKIKASPLKERIDIFN--SIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------FSNHLMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 46 ~~~~~~~~~~a~~~~~--~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~-------~~~~~~~g~~~~a~~~~~~m~~ 116 (225)
.++-+++++++.++.+ ++. ..++ ..-.+.++.-+-+.|..+.|+++ |+-..+.|+++.|.++-++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~--- 343 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKE--- 343 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCC---
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHh---
Confidence 3557889999877764 222 1122 44488888888999999999987 4444889999999987332
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc
Q 045820 117 DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV 189 (225)
Q Consensus 117 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-------~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~ 189 (225)
..+...|..|-+...+.|+++-|+++|.+.....- .-|..-..-|....+. ..-+|.-..++...
T Consensus 344 ---~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~-----~~~~n~af~~~~~l 415 (443)
T PF04053_consen 344 ---LDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEE-----RGDINIAFQAALLL 415 (443)
T ss_dssp ---CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHH-----TT-HHHHHHHHHHH
T ss_pred ---cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHH-----ccCHHHHHHHHHHc
Confidence 34777999999999999999999999987553210 0000001111111111 12367777777778
Q ss_pred CcHHHHHHHHHH
Q 045820 190 GKIHKALLLLFL 201 (225)
Q Consensus 190 g~~~~a~~~~~~ 201 (225)
|++++..+++.+
T Consensus 416 gd~~~cv~lL~~ 427 (443)
T PF04053_consen 416 GDVEECVDLLIE 427 (443)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 888887777654
No 188
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.26 E-value=1.1 Score=34.81 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=66.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
..++..++..+...|+++.+...+++....-- -|...|..+|.+|.+.|+...|++.|+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-------------------~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-------------------YDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-------------------cchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 34567788888888899999999988887543 68899999999999999999999999988
Q ss_pred Hh-----cCCCCCHHHHHHHHHHh
Q 045820 203 YE-----HGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 203 ~~-----~g~~p~~~~~~~ll~~~ 221 (225)
.+ -|+.|...+.....+..
T Consensus 214 ~~~~~edlgi~P~~~~~~~y~~~~ 237 (280)
T COG3629 214 KKTLAEELGIDPAPELRALYEEIL 237 (280)
T ss_pred HHHhhhhcCCCccHHHHHHHHHHh
Confidence 65 49999998888776664
No 189
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.19 E-value=2 Score=39.15 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------------HhcCCHHHHHHHH
Q 045820 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------LMVGRVEEAYEML 111 (225)
Q Consensus 52 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~ 111 (225)
+...|...|+.-.+-. .-+...+....+.|++..+++.|..+.-.. ...++..+|..-|
T Consensus 507 Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f 585 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF 585 (1238)
T ss_pred HHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH
Confidence 3444444444443332 225556777777788888888777763222 4567777777777
Q ss_pred HHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 112 MNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 112 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..-.+. .| |...|..+..+|.+.|.+..|.++|.+....
T Consensus 586 QsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 586 QSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 776653 45 7788999999999999999999999987753
No 190
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.17 E-value=1.7 Score=38.05 Aligned_cols=140 Identities=18% Similarity=0.065 Sum_probs=97.9
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 045820 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137 (225)
Q Consensus 68 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 137 (225)
.+|-...-..+-..+...|-...|..+|+.+ ...|+..+|..+..+-.+ -+||...|-.+.+......
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 3444444556777788889999999998887 667888888888777765 3788999999888888888
Q ss_pred CHHHHHHHHHHHHHc-----CCCc-cHHHHHHHH------------------------------------HHhhcCCCC-
Q 045820 138 RSNEAMELLNEAIER-----GVTQ-NVVTLIQLL------------------------------------QRLEMGHIP- 174 (225)
Q Consensus 138 ~~~~a~~~~~~m~~~-----g~~p-~~~t~~~l~------------------------------------~~~~~~~~p- 174 (225)
-+++|.++.++.... |..+ +..-|.... -.......|
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 888888888764322 1111 111222222 001122344
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
+...||.+-.+|.+.++-.+|...+++..+....|
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 46689999999999999999999999998765443
No 191
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.05 E-value=2.3 Score=33.22 Aligned_cols=99 Identities=8% Similarity=0.036 Sum_probs=74.3
Q ss_pred HHHHHHHhh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045820 108 YEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185 (225)
Q Consensus 108 ~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~ 185 (225)
.++.+-+.+ .|-.++..+--.+|..+++.+++.+-.++|+.-... +.. -|...|..+|..
T Consensus 186 YEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~------------------~D~rpW~~FI~l 247 (292)
T PF13929_consen 186 YEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPG------------------NDPRPWAEFIKL 247 (292)
T ss_pred HHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCC------------------CCCchHHHHHHH
Confidence 344444443 345788888999999999999999999999987654 333 688999999999
Q ss_pred HHccCcHHHHHHHHHH-----HHhcCCCCCHHHHHHHHHHhhcC
Q 045820 186 LCGVGKIHKALLLLFL-----MYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~-----m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
....|+..-...+.++ +.+.|+..+...-..|-+.+.+.
T Consensus 248 i~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~v 291 (292)
T PF13929_consen 248 IVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKV 291 (292)
T ss_pred HHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhc
Confidence 9999998866666553 34556777777777776666554
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.04 E-value=1.8 Score=32.02 Aligned_cols=58 Identities=12% Similarity=0.221 Sum_probs=36.5
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKD--GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
+..-...+..|++.+|...|+.+... +-+-.....-.+..++-+.|+++.|...++..
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555567888888888888888765 22223344555677776667766666666555
No 193
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.85 E-value=1.4 Score=30.22 Aligned_cols=128 Identities=18% Similarity=0.147 Sum_probs=81.6
Q ss_pred hhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045820 40 QAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 40 ~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g 118 (225)
....++..+ +.+........++.+...+ ..+...++.+|..|++... ++..+.++ .
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~-------------------~-- 65 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLD-------------------N-- 65 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHH-------------------h--
Confidence 345566655 4678999999999988877 4688899999999987543 22222222 1
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc-CcHHHHHH
Q 045820 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV-GKIHKALL 197 (225)
Q Consensus 119 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~ 197 (225)
..+......+++.|.+.+.++++..++.++... ...+..+... ++++.|.+
T Consensus 66 -~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~---------------------------~~Al~~~l~~~~d~~~a~~ 117 (140)
T smart00299 66 -KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNF---------------------------KDAIVTLIEHLGNYEKAIE 117 (140)
T ss_pred -ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCH---------------------------HHHHHHHHHcccCHHHHHH
Confidence 123344455777777777777777777765321 1223333333 77788887
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 198 LLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 198 ~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
++.+- -+...|..++..+...
T Consensus 118 ~~~~~------~~~~lw~~~~~~~l~~ 138 (140)
T smart00299 118 YFVKQ------NNPELWAEVLKALLDK 138 (140)
T ss_pred HHHhC------CCHHHHHHHHHHHHcc
Confidence 77751 2666777777776543
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.76 E-value=1.5 Score=33.92 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH---------------------HhcCCHHHHHHHHHHHhhCCC-CC-CHHhHHHHHH
Q 045820 75 FNDLLMALVMLNEQDTAVKFFSNH---------------------LMVGRVEEAYEMLMNVKNDGL-KP-DVYTYTAIMD 131 (225)
Q Consensus 75 ~~~li~~~~~~~~~~~a~~~~~~~---------------------~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~ 131 (225)
|...+..+.+.|++++|...|+.+ ...|++++|...|..+.+.-. .| ....+--+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444456666666655555 556888888888888875311 11 2233444556
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 045820 132 GFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 132 ~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+.+.|+.++|..+|++..+.-
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 7778999999999999988753
No 195
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.74 E-value=2.6 Score=32.92 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=84.2
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh------------hHHHHHHHHhCCHHHHHHHHHHHHhc---CCCCC--hhhHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVDKIKASPLKERIDIFNSIKKD---GTNWS--VSDFND 77 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~~~~~~~~~~a~~~~~~m~~~---g~~~~--~~~~~~ 77 (225)
.....|-..+++++|.+.+.+.-... +.....+++..++++|...+++-.+. .-.|+ ...+..
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44455666677776666665521111 22233445777888888888765332 22333 334666
Q ss_pred HHHHHHhc-CCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhhCCC-----CCCHHh--
Q 045820 78 LLMALVML-NEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKNDGL-----KPDVYT-- 125 (225)
Q Consensus 78 li~~~~~~-~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~~g~-----~p~~~~-- 125 (225)
+-..|-+. |+++.|.+.|++. .+.|++++|.++|++....-. +.++..
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 66667777 7888888888666 788999999999999875432 223322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
++++| .+.-.||...|...+++....
T Consensus 200 l~a~l-~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAIL-CHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHH-HHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHhh
Confidence 34444 666679999999999998754
No 196
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=3.4 Score=34.09 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=74.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH---H---------
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL---L--------- 165 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l---~--------- 165 (225)
...++.++|.--|..... ..| +...|.-++..|.-.|++.+|.-+-+...+. +.-+..+.+.+ .
T Consensus 345 ~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 667888999888887664 455 7889999999999999999988776654432 22334444433 1
Q ss_pred ---HHhhcC--CCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 166 ---QRLEMG--HIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 166 ---~~~~~~--~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
...+++ ++|+-. .-+.+..-+..-|..+.++.+++.-.. ..||...-+.|-+.
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~ 480 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDI 480 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHH
Confidence 333333 344433 334444555566777777777776654 35666655555443
No 197
>PLN02789 farnesyltranstransferase
Probab=93.69 E-value=3 Score=33.37 Aligned_cols=50 Identities=10% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
+++..+++++.+.. +-+..+|+-.--++.+.|++++++..++++++....
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 56777777777643 347888999889999999999999999999987764
No 198
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.69 E-value=1.7 Score=36.98 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=77.2
Q ss_pred HHHHHHHH-HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHH
Q 045820 56 RIDIFNSI-KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGF 133 (225)
Q Consensus 56 a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~ 133 (225)
..++|-++ ++.+..+|+.+++.|=-.| ...|++++|.++|+.... ++| |...||-+--.+
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy----------------~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLY----------------NLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATL 474 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHH----------------hcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHh
Confidence 34444444 3334445555566555555 445666777777777665 467 677899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 134 CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 134 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+...+.++|..-|.+..+.. |+ +++...|--+|...|.+++|.+.|-..+
T Consensus 475 AN~~~s~EAIsAY~rALqLq--------------------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQ--------------------PGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred cCCcccHHHHHHHHHHHhcC--------------------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999988753 33 3455666677888899999988876553
No 199
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=3 Score=38.40 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=97.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------
Q 045820 43 RFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------ 98 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------ 98 (225)
.++..+....++.+.+....|.+. .|...-++.+.+.+...+....+..++-+.
T Consensus 515 flLq~l~r~sPD~~~qFa~~l~Q~--~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aP 592 (1666)
T KOG0985|consen 515 FLLQQLKRSSPDQALQFAMMLVQD--EEPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAP 592 (1666)
T ss_pred HHHHHHHccChhHHHHHHHHhhcc--CCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccch
Confidence 355555667777777777777664 234455666777777766666665554222
Q ss_pred ------------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhH-----HHHHHHHHhcCCHHHHHHHHHHH
Q 045820 99 ------------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTY-----TAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 99 ------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~-----~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
.++|-...|++.|..+.+ |+..+..- .-++ .|...-.++++.+++..|
T Consensus 593 qVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~D--IKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkam 669 (1666)
T KOG0985|consen 593 QVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYD--IKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAM 669 (1666)
T ss_pred HHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHH--HHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHH
Confidence 667888888877776654 11111111 1133 344444588899999999
Q ss_pred HHcCCCccHHHHHHHH-------------HHhhc---------------CCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 150 IERGVTQNVVTLIQLL-------------QRLEM---------------GHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 150 ~~~g~~p~~~t~~~l~-------------~~~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
...+++-|..+...+. ++.+. .+.-|...---.|.+.|+.|++.+.+++.++
T Consensus 670 l~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 670 LSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 8888877776655444 22221 2344555666789999999999998888764
No 200
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=0.51 Score=37.17 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
-+.++++.++..=...|+-||-++++.+|+.+.+.+++.+|..+...|....
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3566777777777788999999999999999999999999999988876543
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=93.32 E-value=2 Score=30.61 Aligned_cols=120 Identities=9% Similarity=-0.038 Sum_probs=69.1
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 94 (225)
.+..++..-+.......+-.......|..-.+.+..|++++|..+|.-+...+.. +..=|..|-..+-..+++++|...
T Consensus 15 ~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~ 93 (165)
T PRK15331 15 MIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDL 93 (165)
T ss_pred HHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544444444444444444455555667999999999999988765332 333344444444334555555554
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 95 FSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 95 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
| ...-.-+. -|...+--.-.+|...|+.+.|...|....+.
T Consensus 94 Y----------------~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 94 Y----------------AVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred H----------------HHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 4 43322111 12222223356778888999999998888774
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=3.3 Score=32.38 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=61.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN-DGLKPDVYT-YTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
|...|-.|=..|...|+.+.| ..-|.+-.+ .|-.|++.. |...+-.-....+..++..+|++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A----------------~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDA----------------LLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred CchhHHHHHHHHHHhcchhHH----------------HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 555666666666555555444 444444333 344444432 33333333333456778888888
Q ss_pred HHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 149 m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
+.+... -|+.+-..|-..+...|++.+|...|+.|.+.
T Consensus 219 al~~D~-------------------~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 219 ALALDP-------------------ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHhcCC-------------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 876543 45666777778888889999999999998874
No 203
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.99 E-value=2.1 Score=29.46 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 75 FNDLLMALVMLNEQDTAV-KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 75 ~~~li~~~~~~~~~~~a~-~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.-.++..|++.|...+-. ..++.+...|.-+.-.+++.++...+ .++....-.+-.||.+.|+..++.+++.+.-+.|
T Consensus 72 lKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 72 LKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 345788888887643332 23555578899999999999987533 5677777788999999999999999999999999
Q ss_pred CC
Q 045820 154 VT 155 (225)
Q Consensus 154 ~~ 155 (225)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 75
No 204
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.89 E-value=0.35 Score=24.68 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
+|+.|-..|.+.|++++|..++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57888999999999999999999855
No 205
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=4.7 Score=33.28 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=99.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHH----------------HhcCCHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF----FSNH----------------LMVGRVEEAY 108 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~----------------~~~g~~~~a~ 108 (225)
..++++.|.--|+.-.... +-+...|.-|+..|...|.+.+|.-. ++.| .....-++|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 6789999998888765442 34788899999999999999887754 3333 1112336666
Q ss_pred HHHHHHhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 045820 109 EMLMNVKNDGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC 187 (225)
Q Consensus 109 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~ 187 (225)
+++++-.. +.|+ +..-+.+-..|...|..+++..+++.-...- ||...-+.|-.-++
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--------------------~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--------------------PDVNLHNHLGDIMR 482 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--------------------cccHHHHHHHHHHH
Confidence 66665543 4564 4567888899999999999999999877643 78888888888888
Q ss_pred ccCcHHHHHHHHHHHHh
Q 045820 188 GVGKIHKALLLLFLMYE 204 (225)
Q Consensus 188 ~~g~~~~a~~~~~~m~~ 204 (225)
-.+.+.+|++.|....+
T Consensus 483 A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALR 499 (564)
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 88888888887776654
No 206
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.76 E-value=0.32 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=22.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+|+.|-..|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888999999999999999999954
No 207
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.73 E-value=3 Score=32.67 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=73.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHh
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYT 125 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~ 125 (225)
.++.+++++|+..|.+-++.. +-|.+-|..--.+|++.|..+.|.+ =.+.-.. +.| ...+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVk----------------Dce~Al~--iDp~yska 151 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVK----------------DCESALS--IDPHYSKA 151 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHH----------------HHHHHHh--cChHHHHH
Confidence 458899999999999988762 3467778888889977776655543 2222222 234 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~ 167 (225)
|..|=.+|.-.|++++|.+-|.+..+ +.|+..+|-.=++.
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99999999999999999999887664 67888888777733
No 208
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=92.69 E-value=2.6 Score=29.83 Aligned_cols=90 Identities=9% Similarity=-0.053 Sum_probs=61.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 045820 45 VDKIKASPLKERIDIFNSIKKDGTNWSVSD-FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123 (225)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 123 (225)
...+..|++++|..+|+.+..- .|.... |-.|=-++- ..|++++|...|.....-. +-|.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q----------------~~g~~~~AI~aY~~A~~L~-~ddp 103 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQ----------------AQKHWGEAIYAYGRAAQIK-IDAP 103 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH----------------HHhhHHHHHHHHHHHHhcC-CCCc
Confidence 3345899999999999988765 343333 444444443 3355666666666665533 2255
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+=.+-.++.+.|+.+.|...|+..+...
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 566666779999999999999999887653
No 209
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=2.3 Score=32.45 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHhh---CC--CCCC
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---LMVGRVEEAYEMLMNVKN---DG--LKPD 122 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~g~~~~a~~~~~~m~~---~g--~~p~ 122 (225)
+..+.|.-+.++|.+- .--+.-|+.-...|..+|..+.|-..+++. ..+-+.++|+++|.+-.. .+ ...-
T Consensus 72 KayEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 4455566666666543 223345888888999999988887777655 667888999999887543 11 1112
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
..-|...-..+.+...+++|-..|.+-
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 233556666777777887776655443
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.36 E-value=4.2 Score=31.50 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=69.4
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------HhcCCH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------LMVGRV 104 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~ 104 (225)
-.+.+.-...++...++..-+.++...+.|.+.-.+.||.+.|...|++. .-..++
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~ 268 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNF 268 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccch
Confidence 34556666777777777655667777778888888888888888888754 334666
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..|...|+++.... ..|+..-|.=.-+..-.|+..+|.+.++.|+..
T Consensus 269 a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 269 AEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77777777766542 224444444333444467888888888888764
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.22 E-value=1.4 Score=36.64 Aligned_cols=84 Identities=19% Similarity=0.146 Sum_probs=60.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHH
Q 045820 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127 (225)
Q Consensus 69 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 127 (225)
+.+...|+.+-.+|.+.|++++|...|+.. ...|+.++|...+.+..+.+ +. -|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~--~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NL--KFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--ch--hHH
Confidence 346677999999999999999999999764 66799999999999988742 11 222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHHcCCCc
Q 045820 128 AIMD--GFCKVGRSNEAMELLNEAIERGVTQ 156 (225)
Q Consensus 128 ~ll~--~~~~~g~~~~a~~~~~~m~~~g~~p 156 (225)
.+.. .+...++..+..++++...+.|...
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 1111 1112234457888999999988643
No 212
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.14 E-value=2.1 Score=27.83 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
|.-+..+-++.+....+.|+.....+.|.||.|..++..|.++|+-.+..
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34456666777777889999999999999999999999999999998854
No 213
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.11 E-value=2.1 Score=39.69 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=64.9
Q ss_pred CChhhcchhhcCcchhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHH-----------------HHHHhc
Q 045820 24 PSAAESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLL-----------------MALVML 85 (225)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li-----------------~~~~~~ 85 (225)
++++.|+..+..+....++...+.+ +.+.+.+|+.++ +|+...+..+. -+|.++
T Consensus 894 ~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred HHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 3445555555555544455555555 445555555543 44444444444 345555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYT--YTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 86 ~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
|+.++|...+. .+|+|.+|..+-.++.. .-|... --.|..-+...++.-+|-++..+-.
T Consensus 966 GklekAl~a~~---~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 966 GKLEKALKAYK---ECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred ccHHHHHHHHH---HhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 66666666555 45888888888777653 223322 3566777777777777766666544
No 214
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.76 E-value=3.6 Score=29.46 Aligned_cols=122 Identities=11% Similarity=0.162 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHhhCCCCCCH
Q 045820 57 IDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML-------------MNVKNDGLKPDV 123 (225)
Q Consensus 57 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~-------------~~m~~~g~~p~~ 123 (225)
.+.++.+.+.++.|+...|..+|+.+.+.|++....+++..-.-.....-|..++ -.|.. -.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLk-----RL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLK-----RL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHH-----Hh
Confidence 4556667788999999999999999999999887777664432222222222222 12211 01
Q ss_pred H-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 124 Y-TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 124 ~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
. .+..++..+...|++-+|.++.....+ .+......++.+..+.+|...-..+++-.
T Consensus 89 ~~~~~~iievLL~~g~vl~ALr~ar~~~~----------------------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 89 GTAYEEIIEVLLSKGQVLEALRYARQYHK----------------------VDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHcCC----------------------cccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 344555556666666666666555322 12223345667777777766555565555
Q ss_pred Hhc
Q 045820 203 YEH 205 (225)
Q Consensus 203 ~~~ 205 (225)
.++
T Consensus 147 ~~~ 149 (167)
T PF07035_consen 147 EER 149 (167)
T ss_pred HHh
Confidence 543
No 215
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.68 E-value=2.4 Score=27.26 Aligned_cols=61 Identities=18% Similarity=0.088 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCccHHHHHHHH
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI-ERGVTQNVVTLIQLL 165 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~l~ 165 (225)
|.-+..+-++.+....+.|+....++.++||.|..++..|.++|+-.+ +.|. +...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 455666777777788899999999999999999999999999999887 4442 333555554
No 216
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.64 E-value=5.7 Score=31.44 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhH
Q 045820 51 SPLKERIDIFNSIKKDGT---NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTY 126 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~ 126 (225)
-...++..+|+.|++... .++...+..++.. ...+.+. -.+.++.+|+.+.+.|+.. |..-+
T Consensus 117 ~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~------------l~~~~E~~Y~~L~~~~f~kgn~LQ~ 182 (297)
T PF13170_consen 117 EIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE------------LAERMEQCYQKLADAGFKKGNDLQF 182 (297)
T ss_pred HHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH------------HHHHHHHHHHHHHHhCCCCCcHHHH
Confidence 357789999999998732 4556666666554 3444432 2467788888898888877 33233
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHcCCCccHHHHHH
Q 045820 127 TAIMDGFCKVGR---SNEAMELLNEAIERGVTQNVVTLIQ 163 (225)
Q Consensus 127 ~~ll~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~ 163 (225)
-+-+-+++.... ..++..+++.+.+.|+++....|..
T Consensus 183 LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 183 LSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 333334444332 3478889999999999866555543
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.62 E-value=7.8 Score=33.99 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=20.8
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
.--=.+|-+.|+-.+|.++++++....
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 334467888999999999999987653
No 218
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.51 E-value=5.7 Score=35.86 Aligned_cols=33 Identities=15% Similarity=-0.001 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
+-...|..||..++...++..|.+.+.+|.++-
T Consensus 1328 r~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1328 RCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 445689999999999999999999999998764
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.35 E-value=5.9 Score=33.54 Aligned_cols=207 Identities=15% Similarity=0.107 Sum_probs=117.3
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchh-h------------hHHHHH-HH----HhCCHHHHHHHHHHHHhcCCCCChhh
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSL-Q------------AQRFVD-KI----KASPLKERIDIFNSIKKDGTNWSVSD 74 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~------------~~~l~~-~~----~~~~~~~a~~~~~~m~~~g~~~~~~~ 74 (225)
...|+...+=.|+-+.+++.+.+-... + |..++. .+ ...+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344556666667777777776652211 1 111111 11 245678888999988877 677777
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHH----------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 045820 75 FNDLLM-ALVMLNEQDTAVKFFSNH----------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD 131 (225)
Q Consensus 75 ~~~li~-~~~~~~~~~~a~~~~~~~----------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 131 (225)
|.-.-. .+...|+++.|.+.|+.. ....++++|.+.|.++.+.. ..+...|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 654433 344558999999998864 66799999999999998743 234444444433
Q ss_pred HH-HhcCCH-------HHHHHHHHHHHHc-----CCCccHHHHHH--HHHHhhcC--------CCCCHHHHHHHHHHHHc
Q 045820 132 GF-CKVGRS-------NEAMELLNEAIER-----GVTQNVVTLIQ--LLQRLEMG--------HIPRTITFNNVIQALCG 188 (225)
Q Consensus 132 ~~-~~~g~~-------~~a~~~~~~m~~~-----g~~p~~~t~~~--l~~~~~~~--------~~p~~~~~~~li~~~~~ 188 (225)
+| ...|+. ++|..+|.+.... |-......|.. +=+....+ ...-..=...+=+++.+
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~~~~~~~d~~~~~p~~El~y~WNg~~~ 427 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQAKVDLVDAILVLPALELMYFWNGFPR 427 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhcCCCcchhhhhcCHHHHHHHHHhcccc
Confidence 33 556666 8888888876432 21222222222 22222221 11111112233355666
Q ss_pred cCcHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhh
Q 045820 189 VGKIHKALLLLFLMYEH---GKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 189 ~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~ 222 (225)
.++-..-...+...... ...+|......|+.|.|
T Consensus 428 ~~~~~l~~~~~~~l~~~~~~~~~~De~~l~~lL~g~~ 464 (468)
T PF10300_consen 428 MPKEELEIKSLLELEESKNSEEDPDERALRHLLKGAC 464 (468)
T ss_pred CChHHHHHHHHHHHHhcccccCCccHHHHHHHHHHHH
Confidence 65544332444444432 35678888888887765
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.35 E-value=3.6 Score=31.74 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=63.9
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-
Q 045820 40 QAQRFVDKIKASPLKERIDIFNSIKKDGT--NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN- 116 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~- 116 (225)
-|+.-+..++.|++..|...|..-.+..- .-....+=-|-.++...|+.+.|..+| ..+.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f----------------~~~~k~ 207 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIF----------------ARVVKD 207 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHH----------------HHHHHh
Confidence 58888888999999999999998877621 222333444667775555555554444 44433
Q ss_pred CCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 117 DGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 117 ~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.+-.|. ..+.=-+-....+.|+.++|..+|++..+.
T Consensus 208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222222 234445556778889999999999998875
No 221
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=91.33 E-value=5.8 Score=34.07 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=46.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
...|++++|...+++..+. .|+...|..+-..+...|+.++|...+++.....
T Consensus 431 ~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 431 LVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4579999999999998875 4788899999999999999999999999887643
No 222
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.31 E-value=7.6 Score=32.28 Aligned_cols=116 Identities=22% Similarity=0.138 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhh---CCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 104 VEEAYEMLMNVKN---DGL-KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 104 ~~~a~~~~~~m~~---~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
.++...++.+... .|+ ..+......++..+ .|+...+..+++.....+...+......++.........+....
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~ 230 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEH 230 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHH
Confidence 4555555555432 243 45555566655443 78999999988887655444455544444433222222222345
Q ss_pred HHHHHHHHc---cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 180 NNVIQALCG---VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 180 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
..+++++.+ .++++.|..++..|.+.|..|....-..++.++
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555666665 588999999999999999888866655555554
No 223
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.26 E-value=4.3 Score=29.37 Aligned_cols=116 Identities=12% Similarity=0.060 Sum_probs=81.4
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHH---------------------
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSV-SDFNDLLMALVMLNEQDTAVKFFSNH--------------------- 98 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~--------------------- 98 (225)
+..-+.....+..++|+.-|.++.+.|..-=+ -.--.+-...++.|+...|...|++.
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 34455555788899999999999888754211 11222334456778899999989888
Q ss_pred -HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 045820 99 -LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 156 (225)
..+|.++......+-+-..|-+.-...=.+|--+-.+.|++.+|...|..+.+....|
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 5667777777766666554443445556777778889999999999999988755443
No 224
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.82 E-value=4 Score=32.42 Aligned_cols=132 Identities=15% Similarity=0.123 Sum_probs=75.1
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 67 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
.+.|...-|- |.++|.....|+.-....-.++..|+ +.+.--..|......+-...+..-....++++++..+
T Consensus 15 ~l~p~~rr~~-LsS~fs~e~~w~~r~~~~~kla~~g~------~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~L 87 (418)
T KOG4570|consen 15 QLSPAGRRYL-LSSAFSDEHKWEAREKEHYKLADLGS------LMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYL 87 (418)
T ss_pred cCCchhcchh-hHHHhhhhhhhhHHHHHHHHHhcccc------cchhhhhcCCCcceeehhhhhhccccccchhHHHHHH
Confidence 3444333332 55566555555544333333433443 1111112344555556666665555566677777666
Q ss_pred HHHHHcC---CCcc--HHHHHHHH-------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 147 NEAIERG---VTQN--VVTLIQLL-------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 147 ~~m~~~g---~~p~--~~t~~~l~-------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
-+++... ..|+ .+++..++ .-...|+-||..+++.+|+.+.+.++..+|.++.-+|...
T Consensus 88 yKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 88 YKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6665431 2222 22333333 1224567799999999999999999999999998888754
No 225
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.79 E-value=6.2 Score=30.36 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=78.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHH------------------HhcCCH
Q 045820 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV-MLNEQDTAVKFFSNH------------------LMVGRV 104 (225)
Q Consensus 44 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~------------------~~~g~~ 104 (225)
++.++..++.+.|..+++++++.- |...-...|=..+. ..|.+++|.++++.+ -..|.-
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc
Confidence 444668899999999999988773 44333332322222 348899999999888 334666
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
-+|++-+.+..+. +.-|...|.-+-..|...|++++|-.+++++.-.
T Consensus 137 l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 137 LEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 6777776666553 5569999999999999999999999999999854
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.78 E-value=8.8 Score=32.12 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=95.6
Q ss_pred HhCCHHHHHHHHHHHHhcCCC----CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCC
Q 045820 49 KASPLKERIDIFNSIKKDGTN----WS-VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN-DGLKPD 122 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~----~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~-~g~~p~ 122 (225)
+.++++++..+|.++.+.--. .. ...-+.+|+||.. .+++.+.....+..+ .|-.|-
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-----------------~nld~Me~~l~~l~~~~~~s~~ 80 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-----------------NNLDLMEKQLMELRQQFGKSAY 80 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-----------------hhHHHHHHHHHHHHHhcCCchH
Confidence 788999999999988765211 11 3335667888744 345666666666654 232233
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIER--GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
...|-++. +-+.+++++|.+.+..=.+. +-+|..--.|. ...-+|...=+..+.+....|.+.++..+++
T Consensus 81 l~LF~~L~--~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni------~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 81 LPLFKALV--AYKQKEYRKALQALSVWKEQIKGTESPWLDTNI------QQLFSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred HHHHHHHH--HHHhhhHHHHHHHHHHHHhhhcccccchhhhhH------HHHhhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 33333332 34667899998888766654 43332211110 0011455556778899999999999999999
Q ss_pred HHHhcCCC----CCHHHHHHHHHHhhcC
Q 045820 201 LMYEHGKI----PSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 201 ~m~~~g~~----p~~~~~~~ll~~~~~~ 224 (225)
.|...=++ -+..+|+.++-.++|+
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 98765443 7999999977777663
No 227
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.29 E-value=15 Score=33.85 Aligned_cols=92 Identities=10% Similarity=-0.022 Sum_probs=51.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPD----VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~ 175 (225)
..|++++|...+++..+.-...+ ....+.+-..+...|++++|...+.+......... ...+-
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-------------~~~~~ 530 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-------------VYHYA 530 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-------------chHHH
Confidence 35666666666666543211111 12334455556667777777777766654211100 00011
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..++..+-..+...|++++|...+++..+
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~ 559 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQ 559 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23445566677889999999999887654
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.19 E-value=0.84 Score=24.37 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.+|..+-..|...|++++|.++|++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778889999999999999999999975
No 229
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.16 E-value=1.1 Score=23.19 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=25.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..+++.+-..|...|++++|+.++++..+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357899999999999999999999987653
No 230
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.12 E-value=8.3 Score=33.46 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=81.4
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 90 (225)
+....+.+-+.+.|..++|+++-..+.. .+--+++.|+++.|.++-.+.. +..-|..|-++....+++..
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D~d~----rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~l 684 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTDPDQ----RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPL 684 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCChhh----hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchh
Confidence 4444555666666666666655444332 2333457788888887755443 55669999999999999999
Q ss_pred HHHHHHHH----------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 91 AVKFFSNH----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 91 a~~~~~~~----------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
|.+.|... ...|+-+....+-...++.|. .|.-..+|...|+++++.+++.+-
T Consensus 685 A~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 685 ASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 99988765 445555555555555555442 355556788899999988887654
No 231
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.09 E-value=0.94 Score=23.41 Aligned_cols=29 Identities=31% Similarity=0.322 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..+++.|-..|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45789999999999999999999999865
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=89.92 E-value=6.3 Score=29.10 Aligned_cols=163 Identities=16% Similarity=0.082 Sum_probs=91.4
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchhh----------hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSLQ----------AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
+.....+...|++.+|.+.|.+..... +.......+.|+++.|...+++..+.--.-....+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 344456677899999999998854321 1112223499999999999999876622212223444444443
Q ss_pred hcCC-------------HHHHHHHHHHH----HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 84 MLNE-------------QDTAVKFFSNH----LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 84 ~~~~-------------~~~a~~~~~~~----~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
.... ...|...|+.+ ....-..+|...+..+.+. .-..-+ .+..-|.+.|.+..|..-+
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~-~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHEL-YIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHH-HHHHHHHCTT-HHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcccHHHHHHHH
Confidence 2211 23444444444 4455555565555555431 111122 2567789999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 045820 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 147 ~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
+.+.+.=-. .. -.....-.++.+|-+.|..+.+.
T Consensus 165 ~~v~~~yp~--t~--------------~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 165 QYVIENYPD--TP--------------AAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHSTT--SH--------------HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHCCC--Cc--------------hHHHHHHHHHHHHHHhCChHHHH
Confidence 998875211 00 11235567778888888877443
No 233
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.76 E-value=5.8 Score=28.43 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=65.4
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC----------CH-
Q 045820 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP----------RT- 176 (225)
Q Consensus 108 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p----------~~- 176 (225)
.+....+.+.|+.|+...|..+++.+.+.|++.. +.++...++-+|+......+-..+....| -.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455566778999999999999999999998654 55566668888777766665221111100 11
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
..+..+++.+...|++-+|.++.+..
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 26778888999999999999988775
No 234
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.27 E-value=5 Score=29.06 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=56.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWS--VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVY 124 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 124 (225)
.++.|+.+.|++.|.++++....+. ...+-.+|......+++..+.....+. ..+.+...+.....-..
T Consensus 46 ~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka---------~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 46 YCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA---------ESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH---------HHHHhccchHHHHHHHH
Confidence 4589999999999999988755443 344677888888888887776655443 22211110000011233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
.|..+. +...|++.+|-..|-+..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 444443 334578888888776654
No 235
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=89.27 E-value=18 Score=33.47 Aligned_cols=137 Identities=15% Similarity=0.074 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH-LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
....++.+|.+.-..-.+..|...+-.. ....+...|.++|+...+-. ..|...+....+.|++..+++.|+.+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 3444555555554444444444433333 22337778888888776532 236677889999999999999998883222
Q ss_pred HHc-------------C-CCccHHHHHHHHHHhhc--CC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 150 IER-------------G-VTQNVVTLIQLLQRLEM--GH-IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 150 ~~~-------------g-~~p~~~t~~~l~~~~~~--~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
-+. | ..|...-+.-.+.-... .. +.|...|..+..+|...|....|.++|.+... ++|+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 111 1 01111222222211111 12 24788999999999999999999999988764 4454
No 236
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.90 E-value=6.6 Score=27.89 Aligned_cols=53 Identities=8% Similarity=0.248 Sum_probs=27.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~ 116 (225)
.++.++.+++..+++-|+-- +|...... +..++.. ...|++++|..+|+++.+
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~-~~~~~l~--------------i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELD-LFDGWLH--------------IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHH-HHHHHHH--------------HHhCCHHHHHHHHHHHhc
Confidence 34556666666666666543 33333222 1122211 455666666666666654
No 237
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.81 E-value=12 Score=30.81 Aligned_cols=166 Identities=17% Similarity=0.144 Sum_probs=102.9
Q ss_pred hhhhHHHHHHH---HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHH--------------
Q 045820 38 SLQAQRFVDKI---KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM--LNEQDTAVKFFSNH-------------- 98 (225)
Q Consensus 38 ~~~~~~l~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~-------------- 98 (225)
..+|+.+-..+ -.|+-..|.++-.+-.+. +.-|..-.-.++.+-.. .|+.+.|.+-|+.|
T Consensus 82 drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgL 160 (531)
T COG3898 82 DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGL 160 (531)
T ss_pred hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHH
Confidence 34455554432 456666666655443222 23344444445544333 48888888888888
Q ss_pred ----HhcCCHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHH--HHHHH-----
Q 045820 99 ----LMVGRVEEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVVT--LIQLL----- 165 (225)
Q Consensus 99 ----~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t--~~~l~----- 165 (225)
-+.|+.+.|.+.-++--. ..|.. -.+.+.+...|..|+++.|+++++.-+.. -+.++..- -..|+
T Consensus 161 yleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 456777777776665443 35554 36788999999999999999999887653 34555441 12222
Q ss_pred -------------HHhhcCCCCCHHHHHHH-HHHHHccCcHHHHHHHHHHHHhcC
Q 045820 166 -------------QRLEMGHIPRTITFNNV-IQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 166 -------------~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
.....++.||...-..+ -.++.+-|+..++-.+++.+=+.-
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 22234556665543333 367788899999988888886653
No 238
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.72 E-value=3.5 Score=26.85 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=35.4
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 045820 170 MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIKK 220 (225)
Q Consensus 170 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~ 220 (225)
....|+.....+.+.+|-+.+++..|.++|+-.+.+ |- ...+|..+++-
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE 88 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE 88 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence 344599999999999999999999999999998853 42 23378777764
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.39 E-value=1.5 Score=23.42 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
+|..+-.+|.+.|++++|+++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 57778899999999999999999999863
No 240
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.34 E-value=11 Score=29.63 Aligned_cols=143 Identities=9% Similarity=0.077 Sum_probs=91.4
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHhHHHHHHHHHh-cC-CHHHH
Q 045820 66 DGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCK-VG-RSNEA 142 (225)
Q Consensus 66 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~g-~~~~a 142 (225)
.|.+++..-.-.++..+...-...+....++-...+..+.+|+++|+.... ..+--|..+-..+++.... .+ ....-
T Consensus 106 ~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~al 185 (292)
T PF13929_consen 106 MGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNAL 185 (292)
T ss_pred cCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhH
Confidence 366666666666666655544433333322222466667778888774432 2345566666666666655 22 22223
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh
Q 045820 143 MELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIKKL 221 (225)
Q Consensus 143 ~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~ 221 (225)
.++.+-+... .+..++..+.-.+|..+++.+++.+-.++++..... +..-|..-|..+|+..
T Consensus 186 YEvV~~l~~t-----------------~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li 248 (292)
T PF13929_consen 186 YEVVDFLVST-----------------FSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLI 248 (292)
T ss_pred HHHHHHHHhc-----------------cccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHH
Confidence 3344444321 123488889999999999999999999999988765 6777889999999887
Q ss_pred hcCC
Q 045820 222 DQQP 225 (225)
Q Consensus 222 ~~~g 225 (225)
.+.|
T Consensus 249 ~~sg 252 (292)
T PF13929_consen 249 VESG 252 (292)
T ss_pred HHcC
Confidence 7765
No 241
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=88.23 E-value=2.3 Score=23.36 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=30.8
Q ss_pred HHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
+....+.|-..++..++++|.+.|+..+...|..+++-
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33444567778899999999999999999999988764
No 242
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.10 E-value=11 Score=29.38 Aligned_cols=115 Identities=12% Similarity=0.029 Sum_probs=75.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH--------------
Q 045820 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ-------------- 166 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~-------------- 166 (225)
.|.+.-....+++..+...+-++.....+.+.-.+.||.+.|...|++..+..-+.|..+++.+.-
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 355555566666666655455777778888888889999999999998887766677777776661
Q ss_pred ----HhhcCC---CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 167 ----RLEMGH---IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 167 ----~~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
....-+ .-|...-|.=.-+..-.|+...|.+.++.|... -|...+-+++
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 111111 123344455445555678888999999999865 3444444433
No 243
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=87.92 E-value=1.6 Score=34.26 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=36.4
Q ss_pred CCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 045820 118 GLKPDVYT-YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161 (225)
Q Consensus 118 g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 161 (225)
.+.||+.+ ||.-|....+.||+++|+.++++.++.|..--..||
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 35577776 789999999999999999999999999986444343
No 244
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.84 E-value=4.2 Score=35.53 Aligned_cols=106 Identities=22% Similarity=0.299 Sum_probs=70.0
Q ss_pred HHhCCHHHHHHHHH-----H-HHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHH----------HhcCCHHHHH
Q 045820 48 IKASPLKERIDIFN-----S-IKKDGTNWSV---SDFNDLLMALVMLNEQDTAVKFFSNH----------LMVGRVEEAY 108 (225)
Q Consensus 48 ~~~~~~~~a~~~~~-----~-m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~----------~~~g~~~~a~ 108 (225)
+.+|+.++|..+.- + +.+-+-+.|. .+.-.+-.-+.+...+..|.++|..| ...++|++|+
T Consensus 714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAF 793 (1081)
T KOG1538|consen 714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAF 793 (1081)
T ss_pred hcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhH
Confidence 36777777776632 1 2232333333 33333344445556778888888888 6789999999
Q ss_pred HHHHHHhhCCCCCCHHh-----------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 109 EMLMNVKNDGLKPDVYT-----------YTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~-----------~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
.+-++..+ ..||++. |.-.=.||.|+|+-.+|.++++++.+..+.
T Consensus 794 alAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 794 ALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred hhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhh
Confidence 99887665 3455432 333457899999999999999998766543
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.83 E-value=7.2 Score=27.10 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 38 SLQAQRFVDKIKASPLKERIDIFNSIKKD--GTNWSVSDFNDLLMALVMLNEQDTAVKFFSN 97 (225)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 97 (225)
..-++.-...++.|++++|...|+.+..+ .-+-...+--.++.+|-+.++++.|...++.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33455666678999999999999999876 2233445566688888666665555544443
No 246
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.79 E-value=0.062 Score=37.23 Aligned_cols=87 Identities=16% Similarity=0.282 Sum_probs=51.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
+++.++.....++.+...+..-+....+.++..|++.++.++...+++.. ..-+.+.+.+++ .+.| .|..
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-~~yd~~~~~~~c---~~~~------l~~~ 88 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-NNYDLDKALRLC---EKHG------LYEE 88 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-SSS-CTHHHHHH---HTTT------SHHH
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-cccCHHHHHHHH---Hhcc------hHHH
Confidence 34566667777777777766677888999999999988777766666532 122333333332 2222 2333
Q ss_pred HHHHHHhcCCHHHHHHH
Q 045820 129 IMDGFCKVGRSNEAMEL 145 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~ 145 (225)
.+-.|.+.|++++|..+
T Consensus 89 a~~Ly~~~~~~~~al~i 105 (143)
T PF00637_consen 89 AVYLYSKLGNHDEALEI 105 (143)
T ss_dssp HHHHHHCCTTHTTCSST
T ss_pred HHHHHHHcccHHHHHHH
Confidence 34456666666666554
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=87.44 E-value=15 Score=30.17 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------------------Hh---cCCHHHHH
Q 045820 57 IDIFNSIKKDGT---NWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------------------LM---VGRVEEAY 108 (225)
Q Consensus 57 ~~~~~~m~~~g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------------------~~---~g~~~~a~ 108 (225)
...+.+|+++=- ..+..+...++-+|-...++|...++.+.+ .+ .|+.++|.
T Consensus 123 ~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al 202 (374)
T PF13281_consen 123 AKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKAL 202 (374)
T ss_pred HHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHH
Confidence 344445554422 223344445666788889999999998888 33 79999999
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCccHH---HHHHHH-----------
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKV---------GRSNEAMELLNEAIERGVTQNVV---TLIQLL----------- 165 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~---t~~~l~----------- 165 (225)
+++..+....-.++..+|..+-..|-.. ...++|...|.+-=+ +.||.. -+.+|+
T Consensus 203 ~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~ 280 (374)
T PF13281_consen 203 QILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSE 280 (374)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchH
Confidence 9999965555566777776655554321 235666666654322 222211 111122
Q ss_pred -----------HHhhcC---CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 166 -----------QRLEMG---HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 166 -----------~~~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
...++| -..|--.+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 281 el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 281 ELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 001122 3356667899999999999999999999999875
No 248
>PRK15331 chaperone protein SicA; Provisional
Probab=87.38 E-value=8.6 Score=27.46 Aligned_cols=86 Identities=15% Similarity=-0.094 Sum_probs=63.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|..+|.-+.-.+ .-+..=|..+-..|-..+++++|...|...-..+. -|...
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-------------------~dp~p 107 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-------------------NDYRP 107 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------------------CCCCc
Confidence 46688888888888776532 12444566777777788999999999988766553 23444
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+-..-.||...|+.++|...|...++
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 55566888899999999999988877
No 249
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=86.95 E-value=3.3 Score=22.78 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
+....+.|-.+++..++++|++.|+..+...|..++
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 334455666667777777777777775555555444
No 250
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.46 E-value=9 Score=26.75 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=63.6
Q ss_pred HHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC-H
Q 045820 63 IKKDGTNWSVSD--FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR-S 139 (225)
Q Consensus 63 m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~ 139 (225)
|.+.+..++..+ .|+++.-.+..+++....++++.+ ..+...... | ..+-.+|++++.+.++..- -
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l---------~~l~~~~~~-~-~~~~ssf~~if~SlsnSsSaK 96 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHL---------HFLNTDNII-G-WLDNSSFHIIFKSLSNSSSAK 96 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHH---------HHhhHHHHh-h-hcccchHHHHHHHHccChHHH
Confidence 454556555543 677777777777777777777765 111111111 1 2466689999999988876 5
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhcC
Q 045820 140 NEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171 (225)
Q Consensus 140 ~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 171 (225)
--+..+|+-|++.+.+++..-|..+|.....|
T Consensus 97 ~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 97 LTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 56789999999988885555555555544444
No 251
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=86.37 E-value=0.88 Score=31.11 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=28.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
+.|.-.+|..+|+.|.++|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 457788999999999999999987 99998765
No 252
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.31 E-value=1.8 Score=23.33 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=27.3
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 181 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
.+..+|...|+.+.|.+++++....|-.|-..--..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~L 40 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARAL 40 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3678999999999999999999976644433333333
No 253
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.24 E-value=9.4 Score=26.78 Aligned_cols=18 Identities=0% Similarity=0.263 Sum_probs=9.8
Q ss_pred HHhCCHHHHHHHHHHHHh
Q 045820 48 IKASPLKERIDIFNSIKK 65 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~ 65 (225)
+...+++++..+++.|+-
T Consensus 21 L~~~d~~D~e~lLdALrv 38 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV 38 (153)
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 355555555555555543
No 254
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.02 E-value=2.7 Score=20.60 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+|..+-.+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5788889999999999999999999886
No 255
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.54 E-value=16 Score=28.84 Aligned_cols=141 Identities=14% Similarity=0.179 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------------------------------
Q 045820 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------------------------------- 98 (225)
Q Consensus 53 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------------------------- 98 (225)
..+|.++|.-+.++.-+ ..+-+.+|.++....+..+|...|...
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 45678888877766322 344455777777777777776655332
Q ss_pred ------------HhcCCHHHHHHHHHHHhhCCCCCC-----------------HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 99 ------------LMVGRVEEAYEMLMNVKNDGLKPD-----------------VYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 99 ------------~~~g~~~~a~~~~~~m~~~g~~p~-----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
..+..++++.++....+.. .-|+ ..+++..-.+|..+|.+.+|..+..+.
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 2224445555555444321 1111 223455667888999999999888887
Q ss_pred HHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh-----cCCCCCHHHHH
Q 045820 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE-----HGKIPSRTSHD 215 (225)
Q Consensus 150 ~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 215 (225)
+...- .+...|-.++..++..|+--.+.+-++.+.+ -|+..|...++
T Consensus 306 ltldp-------------------L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 306 LTLDP-------------------LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred hhcCh-------------------hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 76542 6778888999999999997777777766642 38888777665
No 256
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.47 E-value=7.6 Score=25.04 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh-cCCCCCHHHHHHHHHH
Q 045820 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE-HGKIPSRTSHDMLIKK 220 (225)
Q Consensus 171 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~ 220 (225)
...|+.....+-+.+|-+.+++..|.++|+-.+. .|. +..+|..+++-
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 3449999999999999999999999999998874 332 55578777654
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.39 E-value=3.9 Score=36.61 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=57.8
Q ss_pred CCCCCChhhcchhhcC-cchhhhHH-HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 20 PSRSPSAAESLDLKEN-PRSLQAQR-FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN 97 (225)
Q Consensus 20 ~~~~~~~~~a~~~~~~-~~~~~~~~-l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 97 (225)
+.+.|++++|...+-+ ........ +...+.+........+++.+.+.|+. +...-+.||++|.+.++.++-.++.+.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 4566777777655433 22222222 33344666677777778888888876 667778899999999998887776654
Q ss_pred HH---hcCCHHHHHHHHHH
Q 045820 98 HL---MVGRVEEAYEMLMN 113 (225)
Q Consensus 98 ~~---~~g~~~~a~~~~~~ 113 (225)
-- ..-|++.|++++.+
T Consensus 457 ~~~g~~~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 457 CDKGEWFFDVETALEILRK 475 (933)
T ss_pred CCCcceeeeHHHHHHHHHH
Confidence 31 01135666655443
No 258
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=84.61 E-value=16 Score=29.02 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=80.5
Q ss_pred CCCCCCchhh-HhhhcCCCCCCh-hhcchhhcC-cchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 045820 5 AANSPTPFSV-LLVDSPSRSPSA-AESLDLKEN-PRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA 81 (225)
Q Consensus 5 ~~~~~~~~~~-~l~~~~~~~~~~-~~a~~~~~~-~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 81 (225)
++.+|..... .+-+.+.+.|-. .-|.++|.. +...+.+.++..+|.|..+.-+-- =++|+..+-...-..
T Consensus 160 nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLme-------ffPpnkrs~E~Fak~ 232 (412)
T KOG2297|consen 160 NGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLME-------FFPPNKRSVEHFAKY 232 (412)
T ss_pred CCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHH-------hcCCcchhHHHHHHH
Confidence 3455554444 333344444432 234445544 556667777777777766653321 146666665555555
Q ss_pred HHhcCCHH-----------HHHH-----HHHHHHhcCCHHHHHHHH-HHHhhCCCCCCHH----hHHHHHHHHHhcCCHH
Q 045820 82 LVMLNEQD-----------TAVK-----FFSNHLMVGRVEEAYEML-MNVKNDGLKPDVY----TYTAIMDGFCKVGRSN 140 (225)
Q Consensus 82 ~~~~~~~~-----------~a~~-----~~~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~ 140 (225)
|.+.|--+ .+.+ +-+++.+...+++..... ++|++.++ |++. .|..+|++---+.+-+
T Consensus 233 Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkee 311 (412)
T KOG2297|consen 233 FTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEE 311 (412)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHH
Confidence 55554322 2211 122334455555555444 34565554 5433 4777776644332111
Q ss_pred -HHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHH
Q 045820 141 -EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195 (225)
Q Consensus 141 -~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 195 (225)
-|.+.++ ...+|..|+.++|..|+.+-+
T Consensus 312 lva~qalr---------------------------hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 312 LVAEQALR---------------------------HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHHHHHH---------------------------HHHhhhHHHHHHhcCChHHHH
Confidence 1222222 235788899999999987754
No 259
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.50 E-value=30 Score=30.99 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=33.3
Q ss_pred CCCchhhHhhhcCCCCCChhhcchhhcCcchhh------------hHHHHHHHHhCCHHHHHHHHHHHHh
Q 045820 8 SPTPFSVLLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVDKIKASPLKERIDIFNSIKK 65 (225)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~~~~~~~~~~a~~~~~~m~~ 65 (225)
.|.-.|..+...--.+|+.+-|..+++.-...+ -..+-.++++|+.+....++-+|++
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 444455555555566788888877765522111 1124445577777777766655544
No 260
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=84.35 E-value=21 Score=29.24 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc---cCcHHHHHHHHHHHHh
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG---VGKIHKALLLLFLMYE 204 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~ 204 (225)
.++-+|....+++.+..+++.|.......- .-....--...-++.+ .|+.++|.+++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~---------------~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDV---------------ANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE 210 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccch---------------hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh
Confidence 445579999999999999999987632100 0111112233344555 8999999999999776
Q ss_pred cCCCCCHHHHHHHHHHh
Q 045820 205 HGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 205 ~g~~p~~~~~~~ll~~~ 221 (225)
..-.++..||..+-..|
T Consensus 211 ~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 211 SDENPDPDTLGLLGRIY 227 (374)
T ss_pred ccCCCChHHHHHHHHHH
Confidence 66778888888776655
No 261
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=84.04 E-value=23 Score=29.30 Aligned_cols=76 Identities=9% Similarity=-0.039 Sum_probs=40.4
Q ss_pred CCCChhhcchhhcCcchhhhHHHHH-------HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045820 22 RSPSAAESLDLKENPRSLQAQRFVD-------KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94 (225)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~l~~-------~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 94 (225)
-.|+++.|.+-|+-|-...-..++. +=+.|.-+.|.+.-++--... +--...+...+...|..||++.|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHH
Confidence 3455555555555443333222211 114455555555444433221 11345577788888888888888888
Q ss_pred HHHH
Q 045820 95 FSNH 98 (225)
Q Consensus 95 ~~~~ 98 (225)
.+.-
T Consensus 211 vd~~ 214 (531)
T COG3898 211 VDAQ 214 (531)
T ss_pred HHHH
Confidence 7654
No 262
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.00 E-value=14 Score=26.76 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=27.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPD--VYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
.+.|+.+.|.+.|.++.+....+. +..+=.+|....-.+++..+...+.+...
T Consensus 47 ~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 47 CKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555555555555555433332 22344455555555555555555555443
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=83.82 E-value=26 Score=29.78 Aligned_cols=39 Identities=8% Similarity=-0.049 Sum_probs=25.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhc-CCCCCHHHHHHHHH
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIK 219 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~ 219 (225)
+=-+.-++...+++++|.+.|..+.+. .+ +..+|..+.-
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a 347 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHHHH
Confidence 334445577788899999999999864 33 3444444433
No 264
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.62 E-value=27 Score=29.83 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=32.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 198 (225)
-..+.+.|++..|..-+.++++.. + -|...|..--.||.+.|.+..|..=
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P------------------~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-P------------------EDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-C------------------chhHHHHHHHHHHHHHhhHHHHHHH
Confidence 456778889999999999988765 2 3444555555555555555555443
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=83.05 E-value=7.6 Score=36.27 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=19.3
Q ss_pred CCchhhHhhhcCCCCC--ChhhcchhhcCcc
Q 045820 9 PTPFSVLLVDSPSRSP--SAAESLDLKENPR 37 (225)
Q Consensus 9 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 37 (225)
|..+.-.|+++|.+.+ .+++++......+
T Consensus 789 ~~~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 789 PDKFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred cchhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3344448888988888 6677776655544
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=83.00 E-value=13 Score=25.82 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=43.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGL-KP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+.|++++|.+.|+.+...-. .| ...+-=-++.+|-+.+++++|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 467999999999999987521 11 34456668999999999999999999998764
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.93 E-value=25 Score=29.95 Aligned_cols=67 Identities=12% Similarity=0.196 Sum_probs=42.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLL 165 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~ 165 (225)
-+.|+.++|.+.|.+|.+....- ..-....++.++...+.+.++..++.+--+.... .-...|+..+
T Consensus 270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 35578888888888876532111 2235666788888888888888888876543332 2223555544
No 268
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.86 E-value=4.1 Score=19.90 Aligned_cols=29 Identities=24% Similarity=0.443 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.+|..+-.+|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46888889999999999999999998864
No 269
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.82 E-value=1.3 Score=38.85 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=67.8
Q ss_pred CCCCchhhHhhhcCCCCCChhhcchhhcCcc-hhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 7 NSPTPFSVLLVDSPSRSPSAAESLDLKENPR-SLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.|...++++=+.++...+++++-.++-...+ ..||.|+...| +.|+.++|...+.+.... .-...+|.+
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~ 782 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLR 782 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHH
Confidence 4555777777889999999988888877776 78899988866 889999998887654322 157788888
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113 (225)
Q Consensus 85 ~~~~~~a~~~~~~~~~~g~~~~a~~~~~~ 113 (225)
.|++.+|.++= ++..+...-.+++..
T Consensus 783 ~~~~~eAad~A---~~~rd~~~L~ev~~~ 808 (829)
T KOG2280|consen 783 VGDVKEAADLA---AEHRDGAELSEVLSK 808 (829)
T ss_pred hccHHHHHHHH---HHhcChHHHHHHHHh
Confidence 88887776643 233454544455443
No 270
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=82.51 E-value=11 Score=24.74 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 76 NDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 76 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
++|+.+|... +...+..+++. ...-+++++.+.+. +. .-|..++.-|...|..++|++++.+...
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~-~N~C~~~~~e~~L~---~~------~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRL-PNYCDLEEVEEVLK---EH------GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHcc-CCcCCHHHHHHHHH---Hc------CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5678888887 66666666553 24556676666553 22 2589999999999999999999999887
No 271
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.50 E-value=33 Score=30.04 Aligned_cols=135 Identities=18% Similarity=0.147 Sum_probs=79.4
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF-------FSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~-------~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
-.|+++.|..++..+. ...-+.+..-+-+.|-.++|+++ |+-..+.|+++.|.++..+..
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~------ 664 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEAN------ 664 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhc------
Confidence 4566666666544433 23345566666666777777665 444467788888887755433
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------ccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-------QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK 194 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-------p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 194 (225)
+..-|..|-++..+.+++..|.++|.+....+-- -|..-...+-...+..- ..|.-..+|...|++++
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g-----~~N~AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG-----KNNLAFLAYFLSGDYEE 739 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc-----ccchHHHHHHHcCCHHH
Confidence 5566888888888888888888888776654321 01111111111112111 23444566777888888
Q ss_pred HHHHHHH
Q 045820 195 ALLLLFL 201 (225)
Q Consensus 195 a~~~~~~ 201 (225)
+.+++.+
T Consensus 740 C~~lLi~ 746 (794)
T KOG0276|consen 740 CLELLIS 746 (794)
T ss_pred HHHHHHh
Confidence 8777654
No 272
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=81.57 E-value=27 Score=28.39 Aligned_cols=131 Identities=17% Similarity=0.070 Sum_probs=82.3
Q ss_pred hcCCCCCChhhcchhhcC-----cchhh--hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 045820 18 DSPSRSPSAAESLDLKEN-----PRSLQ--AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDT 90 (225)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~-----~~~~~--~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~ 90 (225)
+.|...|+-.-|+.-+.. |+-.+ .+.-.-.++.|.++.|..=|+...++ .|+. +....+..+.--.++
T Consensus 80 T~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~--~~s~---~~~~eaqskl~~~~e 154 (504)
T KOG0624|consen 80 TVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH--EPSN---GLVLEAQSKLALIQE 154 (504)
T ss_pred HHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc--CCCc---chhHHHHHHHHhHHH
Confidence 445555665555544433 22111 11122245999999999999999877 3322 223333433333333
Q ss_pred HHHHHHHH---HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 91 AVKFFSNH---LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 91 a~~~~~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
-..+-..+ ...|+...|......+.+-. +.|...|-.--.+|...|+...|..=+....+..-
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ 220 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 33322222 67899999999999988742 34888899999999999999999877766655443
No 273
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=80.96 E-value=1.6 Score=29.81 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=25.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 133 (225)
...|.-.+|..+|.+|.++|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 456777888888888888888777 477777654
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.83 E-value=19 Score=26.19 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=58.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH----HHHHHH--------
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV----TLIQLL-------- 165 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~l~-------- 165 (225)
++.+..++|+.-|..+++.|..--. ..---+-......|+...|...|++.-+..-.|-.. -..+..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 5556666666666666665443211 111122233455666777777777666554443222 111111
Q ss_pred ----HHhh----cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 166 ----QRLE----MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 166 ----~~~~----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
...+ .+-..-...-.+|-.+--+.|++.+|.++|..+...--.|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1110 0111122233556666678999999999999998644344
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=80.81 E-value=42 Score=30.10 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=10.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
.|+.+-..++....|++|.+.+
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=80.58 E-value=35 Score=29.09 Aligned_cols=156 Identities=13% Similarity=0.068 Sum_probs=89.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHH--------HHHH
Q 045820 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE--------MLMN 113 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~--------~~~~ 113 (225)
..+..+++..+.+..++.=.+-.+. .|+-.+ .-++-+--.+..+.++.++|++..+.|...--.. .++.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAd-AYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCAD-AYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhH-HHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 3455577777777766665544432 333221 2223333345667888888887733332211111 1112
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcH
Q 045820 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKI 192 (225)
Q Consensus 114 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~ 192 (225)
+......|-..+=.-+-.++.+.|+.++|.+.+.+|.+.. .. -+......||.++...+..
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~------------------~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL------------------DNLNIRENLIEALLELQAY 311 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc------------------chhhHHHHHHHHHHhcCCH
Confidence 2222222223333446667778999999999999998643 11 2345677888999999999
Q ss_pred HHHHHHHHHHHhcCCC-CCHHHHHHHH
Q 045820 193 HKALLLLFLMYEHGKI-PSRTSHDMLI 218 (225)
Q Consensus 193 ~~a~~~~~~m~~~g~~-p~~~~~~~ll 218 (225)
+++..++.+-.+.... --...|+..+
T Consensus 312 ad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 312 ADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHH
Confidence 9999988886543322 2234555443
No 277
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.53 E-value=21 Score=26.47 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=59.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
+.|+ +.|.+.|-.++..+.--++...-++-.-|. ..+.+++..++.+..+..- .+-.+|...+
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~---------------~~~~~n~eil 181 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN---------------PDDNFNPEIL 181 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC---------------CCCCCCHHHH
Confidence 3344 678888888888776556666667666666 5678999999888776422 1224889999
Q ss_pred HHHHHHHHccCcHHHHH
Q 045820 180 NNVIQALCGVGKIHKAL 196 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~ 196 (225)
.+|.+.|-+.|+.+.|.
T Consensus 182 ~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 182 KSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHhcchhhhh
Confidence 99999999999999875
No 278
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.76 E-value=5.5 Score=19.35 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+|..+-..|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4577788899999999999999998875
No 279
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.40 E-value=40 Score=29.03 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=64.1
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHH
Q 045820 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193 (225)
Q Consensus 114 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 193 (225)
+.+.|+..+......++... .|+...|..++++....|- ...|...+-.++ |. ++....-.++.+... |+.+
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~--~~It~~~V~~~l--g~-~~~~~i~~ll~al~~-~d~~ 262 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGN--GKVLIADVKTML--GT-IEPLLLFDILEALAA-KAGD 262 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCC--CCcCHHHHHHHH--CC-CCHHHHHHHHHHHHc-CCHH
Confidence 45578877777777666554 5899999999998877652 234444444443 22 555666667777666 7899
Q ss_pred HHHHHHHHHHhcCCCCCHHH
Q 045820 194 KALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 194 ~a~~~~~~m~~~g~~p~~~~ 213 (225)
++..++++|.+.|..|....
T Consensus 263 ~~l~~~~~l~~~g~~~~~il 282 (509)
T PRK14958 263 RLLGCVTRLVEQGVDFSNAL 282 (509)
T ss_pred HHHHHHHHHHHcCCCHHHHH
Confidence 99999999999998876443
No 280
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.23 E-value=4.9 Score=21.66 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=22.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
+-.+|...|+.+.|..++++....|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 46789999999999999999987553
No 281
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.73 E-value=24 Score=26.09 Aligned_cols=110 Identities=17% Similarity=0.124 Sum_probs=72.0
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHH--HHHHHhcCCHHHHHHHHHHH--------------------
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDL--LMALVMLNEQDTAVKFFSNH-------------------- 98 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~-------------------- 98 (225)
|..++..+..+.+ +.....+.+....-.-...++.+| -..+..++++++|...++..
T Consensus 57 Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArv 135 (207)
T COG2976 57 YQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARV 135 (207)
T ss_pred HHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 4455566655555 455555666655322222233332 34467788888888877644
Q ss_pred -HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 99 -LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
...|..++|+..++...+.+. .......-=+.+...|+-++|..-|++..+.+
T Consensus 136 q~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 136 QLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 667899999999887775432 22334445578889999999999999988876
No 282
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.60 E-value=36 Score=28.05 Aligned_cols=121 Identities=13% Similarity=0.073 Sum_probs=73.0
Q ss_pred HHHhCCHHHHHHHHHHHHhc-----CCCC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKD-----GTNW---------SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~-----g~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~ 112 (225)
.++.|.+..|...|+..... +..+ -...++.+.-++ .+.+++..|.+..+
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~----------------lKl~~~~~Ai~~c~ 281 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACY----------------LKLKEYKEAIESCN 281 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHH----------------HhhhhHHHHHHHHH
Confidence 45889999999998875432 1111 111222222233 45566777777777
Q ss_pred HHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCc
Q 045820 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGK 191 (225)
Q Consensus 113 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~ 191 (225)
+....+ ++|+-..--=-.||...|+++.|...|.++++.. |+ -..-+-|+.+--+...
T Consensus 282 kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------------------P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 282 KVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------------------PSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------------------CCcHHHHHHHHHHHHHHHH
Confidence 776643 3566554445678888899999999999998753 33 3333444444444443
Q ss_pred HH-HHHHHHHHHHh
Q 045820 192 IH-KALLLLFLMYE 204 (225)
Q Consensus 192 ~~-~a~~~~~~m~~ 204 (225)
.. +..++|..|-.
T Consensus 341 ~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 341 YEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHhh
Confidence 33 34677777743
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.51 E-value=6.1 Score=19.10 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..|..+-..|.+.|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777889999999999999999876
No 284
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.47 E-value=42 Score=28.68 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=71.4
Q ss_pred HHHHHHHHHH-hhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 105 EEAYEMLMNV-KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 105 ~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
+...+.+.+. ...|+..+......+.. .-.|+...|+.++++....+ ....|+..+.+++ |. .+...+..++
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l--g~-~~~~~~~~l~ 255 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI--GY-HGIEFLTSFI 255 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh--CC-CCHHHHHHHH
Confidence 3344444444 44677777777666553 34589999999999876543 1234555555554 33 4777888888
Q ss_pred HHHHccCcHHHHHHHHHHHHhcCCCCCHHHH
Q 045820 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 214 (225)
.+....+....|+.++++|.+.|.-|.....
T Consensus 256 ~si~~~d~~~~al~~l~~l~~~G~d~~~~~~ 286 (484)
T PRK14956 256 KSLIDPDNHSKSLEILESLYQEGQDIYKFLW 286 (484)
T ss_pred HHHHcCCcHHHHHHHHHHHHHcCCCHHHHHH
Confidence 8888877778999999999999988766543
No 285
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.45 E-value=4.8 Score=18.63 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 045820 126 YTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
...+-.++...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456678888899999988875
No 286
>COG5210 GTPase-activating protein [General function prediction only]
Probab=77.84 E-value=44 Score=28.63 Aligned_cols=105 Identities=12% Similarity=0.163 Sum_probs=74.5
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCC--CCCHHHHHHHHH
Q 045820 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH--IPRTITFNNVIQ 184 (225)
Q Consensus 107 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~--~p~~~~~~~li~ 184 (225)
.-+++..+...|+.+...++.-++..+.+.-..+.+.++|+.+--.|.......+.+++...+.+. ..+...+..+..
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 440 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLDLLLK 440 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhccCchhHHHHHHH
Confidence 346778888999999999999999999999999999999999999998877777777764433322 122222222222
Q ss_pred HH--------------HccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 185 AL--------------CGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 185 ~~--------------~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
-+ ...+...+...+...+.+.++.|+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~p~~ 481 (496)
T COG5210 441 QLFLHSGKEAWSSILKFRHGTDRDILLFIEDLLKKDITPTR 481 (496)
T ss_pred hhhhhhhhhhhhhhHHhhhhhhhhHHHHHHhhhhcccCchh
Confidence 22 3344445666777777777888886
No 287
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=77.68 E-value=30 Score=26.65 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=98.3
Q ss_pred hhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-----------
Q 045820 32 LKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD--GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------- 98 (225)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------- 98 (225)
....+...-|+..+..++.|++++|.+.|+.+... +-+-...+--.++.++-+.++.+.|...+++.
T Consensus 29 ~~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 29 VYNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 34445556677777777888888888888888754 22334555566677777778888887777666
Q ss_pred ---------------HhcCCHHHHHHHHHHHh---h----CCCCCCHHhH------------HHHHHHHHhcCCHHHHHH
Q 045820 99 ---------------LMVGRVEEAYEMLMNVK---N----DGLKPDVYTY------------TAIMDGFCKVGRSNEAME 144 (225)
Q Consensus 99 ---------------~~~g~~~~a~~~~~~m~---~----~g~~p~~~~~------------~~ll~~~~~~g~~~~a~~ 144 (225)
-...|...+..-|..+. . +...||...= -.+-+-|.+.|.+..|..
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 12233333333333332 2 2233333221 235667788888988888
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 145 ~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
-+++|.+. .+-.. -.....-.+..+|-..|-.++|...-+-+..+
T Consensus 189 R~~~v~e~-y~~t~---------------~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 189 RFEEVLEN-YPDTS---------------AVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhc-ccccc---------------chHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88888876 22111 12345566778888888888888877776654
No 288
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.42 E-value=29 Score=26.31 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
|.+..++.+.+.+.+++|.....+-.+..- -|.-+--.++.-+|-.|++++|..=++..-+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-------------------tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-------------------TDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-------------------ccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 456667888889999999998887766532 3444556678889999999999876666543
Q ss_pred --cCCCCCHHHHHHHHHH
Q 045820 205 --HGKIPSRTSHDMLIKK 220 (225)
Q Consensus 205 --~g~~p~~~~~~~ll~~ 220 (225)
-...+-..+|..+|++
T Consensus 64 l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 64 LSPQDTVGASLYRHLIRC 81 (273)
T ss_pred cCcccchHHHHHHHHHHH
Confidence 2456677788877765
No 289
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=77.20 E-value=5.4 Score=23.61 Aligned_cols=51 Identities=10% Similarity=0.112 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 173 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
.|....++.++..+++-.-.+.++..+.+..++|. .+..+|---++.++|+
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 47778899999999999999999999999999885 5788888877777764
No 290
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=76.78 E-value=39 Score=27.51 Aligned_cols=134 Identities=10% Similarity=0.091 Sum_probs=90.0
Q ss_pred cCCCCCChhhcchhhcCcchhh----------------------hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHH
Q 045820 19 SPSRSPSAAESLDLKENPRSLQ----------------------AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFN 76 (225)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~----------------------~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 76 (225)
.+.+.|..++|..-|+...... .+.+.+++..|+...|+.....+.+-. +-+...|-
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 4678888888887776532111 112444557899999999999988774 44788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhH----HH------
Q 045820 77 DLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTY----TA------ 128 (225)
Q Consensus 77 ~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~----~~------ 128 (225)
.--.+|...|++..|..=++.. ...|+.+.++....+..+ +.||...+ -.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHH
Confidence 8888999999988887655444 566787877777777665 34554321 11
Q ss_pred ---HHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 129 ---IMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 129 ---ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
=+....+.++|.++..-.+...+..-.
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 123445667788888777776665433
No 291
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=76.60 E-value=6.7 Score=30.88 Aligned_cols=45 Identities=27% Similarity=0.280 Sum_probs=36.7
Q ss_pred CCCHHH-HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 173 IPRTIT-FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 173 ~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
.||..+ |+.-|....+.||+++|+++++|.++-|+.--..||-.-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 356555 579999999999999999999999999987666665443
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.45 E-value=6.6 Score=18.76 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=20.9
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 181 NVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 181 ~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.+-.+|.+.|+.++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456777899999999999999864
No 293
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=76.16 E-value=17 Score=22.89 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=34.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~ 175 (225)
....|..-++...... .+++ ++|+-....|+..|...|..+++..+.++.|+
T Consensus 9 ~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~ 60 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPD 60 (88)
T ss_pred hHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHH
Confidence 3445555554433333 2222 78888888999988877777777777777665
No 294
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.08 E-value=34 Score=26.51 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=66.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYT---YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~ 175 (225)
.+.|++..|...|....+.. +-+..+ +-=|-.++...|++++|-.+|..+.+.--+ . .--
T Consensus 152 ~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~--s--------------~KA 214 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK--S--------------PKA 214 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC--C--------------CCC
Confidence 36688889999988887653 223333 333778999999999999999998874211 0 012
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
....--|-.+..+.|+-++|-.+|++..+.
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 356667778888999999999999999875
No 295
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=75.67 E-value=36 Score=26.54 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.++|..+.+.+...... ...+|-.-|..+.+.++.+.+.+++.+|...
T Consensus 103 ~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 103 VEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34455555555443211 1233434455555577777777777777764
No 296
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=75.65 E-value=30 Score=25.54 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH-HHHhcCC--HHHHHHHHHHHHH
Q 045820 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMD-GFCKVGR--SNEAMELLNEAIE 151 (225)
Q Consensus 75 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~--~~~a~~~~~~m~~ 151 (225)
++...-.....|+++.|..-++++ .+...++++ -...|+.+.. +++.++. +-+|.-++.-...
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a---------~~~v~~Lk~-----~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKA---------SEAVEKLKR-----LLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH---------HHHHHHHHH-----HHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 444445556667777766655443 333333332 2234555555 6777763 5566666665554
Q ss_pred cCCCccHHHHHHHHHHhhcCCCCCHHHH-H----------HHHHHHHccCcHHHHHHHHHHHHh
Q 045820 152 RGVTQNVVTLIQLLQRLEMGHIPRTITF-N----------NVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 152 ~g~~p~~~t~~~l~~~~~~~~~p~~~~~-~----------~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
. ..|+.. +.|+.| ..| + -.+--..+.|+++.|.+.++-|.+
T Consensus 98 ~-~~ps~~---------EL~V~~--~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 98 G-RLPSPE---------ELGVPP--IAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred C-CCCCHH---------HcCCCH--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3 333322 111111 111 0 011122467889999999988864
No 297
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.34 E-value=52 Score=28.22 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=44.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.+.|++..|.+.|.++.... +-|...|..---+|.+.|.+..|+.--+.-++.
T Consensus 369 Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 369 FKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 77899999999999998764 337788999999999999999998876666554
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=74.47 E-value=3.5 Score=20.65 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHccCcHHHHH
Q 045820 174 PRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
-|...|+.+-..|...|++++|.
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 46789999999999999999986
No 299
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=74.42 E-value=19 Score=22.79 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=21.9
Q ss_pred ChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVM---LNEQDTAVKFFSNHLMVGRVEEAYEMLM 112 (225)
Q Consensus 71 ~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~g~~~~a~~~~~ 112 (225)
+......+|.++.. ..+.+.+.++++.+.+.++++-+...+.
T Consensus 45 ~~~~L~~il~~l~~~~~~~~~~~i~~~L~~L~~~~RF~l~~~fl~ 89 (94)
T PF13877_consen 45 EPEFLSEILEALNEHFIPEDPEFIFEILEALSKVKRFDLAVMFLS 89 (94)
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcCCCCHHHHHHhcC
Confidence 33334444444433 2344566666666666666666665443
No 300
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=74.23 E-value=53 Score=27.80 Aligned_cols=128 Identities=18% Similarity=0.151 Sum_probs=77.7
Q ss_pred CCCCChhhcchhhcCcchhh------------hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 045820 21 SRSPSAAESLDLKENPRSLQ------------AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~------------~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 88 (225)
.+-+++.+|.++|.+.-... ...+++++-..+.+........+++. .| ...|-.+..+...
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~---- 89 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA---- 89 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH----
Confidence 34566777777665532111 22466666667777777777666655 22 3445556555433
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCC------------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKND--GLK------------PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~a~~~~~~m~~~--g~~------------p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
.+.+.+++|.+.+....++ +-. +|..-=+.....+.+.|++.++..++++|...=+
T Consensus 90 ----------Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 90 ----------YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred ----------HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 2334455555555544433 222 2233336677888999999999999998876544
Q ss_pred C----ccHHHHHHHH
Q 045820 155 T----QNVVTLIQLL 165 (225)
Q Consensus 155 ~----p~~~t~~~l~ 165 (225)
+ .+..+|+.++
T Consensus 160 krE~~w~~d~yd~~v 174 (549)
T PF07079_consen 160 KRECEWNSDMYDRAV 174 (549)
T ss_pred hhhhcccHHHHHHHH
Confidence 4 8888998855
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.58 E-value=1.2 Score=30.59 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHH
Q 045820 101 VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN 180 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~ 180 (225)
.+.......+++.+...+..-+....|.++..|++.++.++.+.+++.... ..+ ..+++.+. ....|.
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd~-----~~~~~~c~-----~~~l~~ 87 (143)
T PF00637_consen 20 RNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YDL-----DKALRLCE-----KHGLYE 87 (143)
T ss_dssp TT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S-C-----THHHHHHH-----TTTSHH
T ss_pred CCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cCH-----HHHHHHHH-----hcchHH
Confidence 445555666666667666556788899999999999988888888872211 111 11111111 112344
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHhhcCC
Q 045820 181 NVIQALCGVGKIHKALLLLFLMYEH-------GKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 181 ~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~g 225 (225)
..+--|.+.|++++|.+++..+..- .-.++...|..+++.|..++
T Consensus 88 ~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 88 EAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSK 139 (143)
T ss_dssp HHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTST
T ss_pred HHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4555666666666666643332210 12357888888888887653
No 302
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=73.49 E-value=8.1 Score=25.50 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=33.0
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
++......+..-.|.++++.+.+.+..++..|....|+.+.++|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 44445555555678889999988888888888888888887776
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.39 E-value=75 Score=29.17 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=34.7
Q ss_pred HhcCCHHHHHHHHHHHhhC----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 99 LMVGRVEEAYEMLMNVKND----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
...|++++|.++-+..... -..+.+..+.++..+..-.|++++|..+..+..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 4457777777766665432 22345666777777777778888877776665544
No 304
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.13 E-value=23 Score=24.21 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.-+..+-++.+....+.|+...-.+-+.||.+..|+..|.++|+-.+..
T Consensus 65 ~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 65 GWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3455666777777889999999999999999999999999999988743
No 305
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.96 E-value=6.4 Score=22.94 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
-.---.+|.+|...|++++|.++++++.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445678999999999999999999875
No 306
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=72.37 E-value=16 Score=23.98 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=48.0
Q ss_pred HHHHHHHHHHH-HcCCCc-cHHHHHHHHHHhhcCCCCCHHHH----HHHHHHHHccCcHHHHHHHHHHHH--hcCCCCCH
Q 045820 140 NEAMELLNEAI-ERGVTQ-NVVTLIQLLQRLEMGHIPRTITF----NNVIQALCGVGKIHKALLLLFLMY--EHGKIPSR 211 (225)
Q Consensus 140 ~~a~~~~~~m~-~~g~~p-~~~t~~~l~~~~~~~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~--~~g~~p~~ 211 (225)
++|...+.+++ ..|+.| |...=-++...++.+..|+.... +.-++-+.-.|+++.....+=... ..+..+|.
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~~~~d~~~E~~~~T~~Ge~~~i~~alLkq~~~~~~~~~d~ 84 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVADIKLDGNVEIDWYTFAGEYGDIYLALLKQRCVADGPELDD 84 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccccCCCCCeEEEeeeecCchHHHHHHHHHHHHHccCCCCCH
Confidence 45666677776 357777 66666666666666555543322 111222333477666554433332 45677777
Q ss_pred HHHHHHHHHhhcCC
Q 045820 212 TSHDMLIKKLDQQP 225 (225)
Q Consensus 212 ~~~~~ll~~~~~~g 225 (225)
..+...+.+....|
T Consensus 85 e~l~~~~~lHl~rG 98 (105)
T TIGR03184 85 ESLAKALNLHVHRG 98 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776655443
No 307
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.30 E-value=43 Score=27.59 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=77.0
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHH------------------H
Q 045820 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVS--DFNDLLMALVMLNEQDTAVKFFSNH------------------L 99 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~------------------~ 99 (225)
+..++..+++.|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+..+++.- +
T Consensus 35 g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~ 110 (413)
T PHA02875 35 GISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLAT 110 (413)
T ss_pred CCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHH
Confidence 455666666666654 333444455544432 1223444555667766666555421 2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH---HHHHHH---------
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYT--YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV---TLIQLL--------- 165 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~l~--------- 165 (225)
..|+. ++++.+.+.|..|+... -.+.+...++.|+.+-+..+++ .|..++.. -.+.|.
T Consensus 111 ~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~TpL~~A~~~g~~e 182 (413)
T PHA02875 111 ILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID----HKACLDIEDCCGCTPLIIAMAKGDIA 182 (413)
T ss_pred HhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 33333 34444455565554432 1234455556777655544443 34332211 111111
Q ss_pred ---HHhhcCCCCCHHH---HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 166 ---QRLEMGHIPRTIT---FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 166 ---~~~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
.+.+.|..|+... ..+++...+..|+.+ +.+.+.+.|..|+..
T Consensus 183 iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNIM 231 (413)
T ss_pred HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcchH
Confidence 3345555555432 224555455666654 566667788888764
No 308
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.77 E-value=30 Score=25.21 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 173 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.|+..+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 38889999999999999999999999888875
No 309
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.73 E-value=66 Score=27.77 Aligned_cols=92 Identities=11% Similarity=0.160 Sum_probs=49.8
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 045820 64 KKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143 (225)
Q Consensus 64 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 143 (225)
.+.|+..+......++... .|+...|..++++....|.-.--.+-..+|. |. ++....-.++++... |+.+.+.
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~l--g~-~~~~~i~~ll~al~~-~d~~~~l 265 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTML--GT-IEPLLLFDILEALAA-KAGDRLL 265 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHH--CC-CCHHHHHHHHHHHHc-CCHHHHH
Confidence 3445555554444443332 3566666666655432221111111112222 22 344444555666655 8899999
Q ss_pred HHHHHHHHcCCCccHHHH
Q 045820 144 ELLNEAIERGVTQNVVTL 161 (225)
Q Consensus 144 ~~~~~m~~~g~~p~~~t~ 161 (225)
.++++|...|..|.....
T Consensus 266 ~~~~~l~~~g~~~~~il~ 283 (509)
T PRK14958 266 GCVTRLVEQGVDFSNALA 283 (509)
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 999999999998865443
No 310
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=71.05 E-value=11 Score=32.23 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=59.4
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh--------hHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ--------AQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
.|+..|.+.+++++|+.++..|+=.. .+.+.+.+ +..--.+....++.....=..|....-.....-|..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d- 491 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD- 491 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-
Confidence 56778888888888888887765221 22344444 333334444455555444333444333344444443
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045820 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115 (225)
Q Consensus 86 ~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~ 115 (225)
.=.+.|.++|..+.+.+++++|+.+-.++.
T Consensus 492 ~V~~~aRRfFhhLLR~~rfekAFlLAvdi~ 521 (545)
T PF11768_consen 492 PVSDLARRFFHHLLRYQRFEKAFLLAVDIG 521 (545)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 223567888888888999998887755444
No 311
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=70.94 E-value=54 Score=26.45 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=9.2
Q ss_pred cCcHHHHHHHHHHHH
Q 045820 189 VGKIHKALLLLFLMY 203 (225)
Q Consensus 189 ~g~~~~a~~~~~~m~ 203 (225)
..+|.+|-.+|-+..
T Consensus 194 vR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSV 208 (393)
T ss_pred HHhHHHHHHHHHHHc
Confidence 345666766666654
No 312
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.31 E-value=48 Score=25.67 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCccHHHHHHHHHHhhcC
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIERG---VTQNVVTLIQLLQRLEMG 171 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~l~~~~~~~ 171 (225)
|-+.|-.|.-..++..|+.+++.--+.+ -.-+..+...|+..++.|
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~g 241 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEG 241 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccC
Confidence 3334444555566777777776633332 233445555566544443
No 313
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=70.13 E-value=84 Score=28.37 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=94.1
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCC
Q 045820 60 FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 60 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
+.+++...+.-+...|..+--+...+|+++.+.+.|++. ...|.-..|..++++-....-.|
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 344444456668889999999999999999999998877 55677777877777654322224
Q ss_pred -CHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHc-----C-CCccHH-----HHHHHH-----------------HHhh--
Q 045820 122 -DVYTYTAIMDGFC-KVGRSNEAMELLNEAIER-----G-VTQNVV-----TLIQLL-----------------QRLE-- 169 (225)
Q Consensus 122 -~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~-----g-~~p~~~-----t~~~l~-----------------~~~~-- 169 (225)
|+..+-..-.-|. +.+.++++++.-.+..+. + +.|-.. +|.-.. +.++
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 3333333333333 345677777766666552 1 111111 111111 1111
Q ss_pred ---cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 170 ---MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 170 ---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
.+-.|++..|-++ -|+..++++.|.+..++..+-+-.-+...|..|.-.+
T Consensus 471 v~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvl 523 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVL 523 (799)
T ss_pred HhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 2334555444443 4666778888998888888765455666666554443
No 314
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=70.01 E-value=6.1 Score=26.36 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=33.9
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 181 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.++......+..-.|.++++.|.+.|...+..|...-|+.+.++|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 455566666656778899999999998899988888888888776
No 315
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.79 E-value=21 Score=26.04 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 119 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..|+..+|..++.++...|+.++|.++..++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999998864
No 316
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=69.65 E-value=9.2 Score=17.20 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..|..+-..+...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3567788889999999999999988765
No 317
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=68.96 E-value=33 Score=23.28 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=48.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
.+.+........++.+...+ ..+...+|.++..|++.+. ++....+.. .. +.....-+++.+.. ...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~~---~~yd~~~~~~~c~~-----~~l 84 (140)
T smart00299 18 EKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---KS---NHYDIEKVGKLCEK-----AKL 84 (140)
T ss_pred HhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---cc---ccCCHHHHHHHHHH-----cCc
Confidence 34456677777777776665 3677789999999998753 334444442 11 11111112222211 123
Q ss_pred HHHHHHHHHccCcHHHHHHHH
Q 045820 179 FNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~ 199 (225)
|...+.-|.+.|+.++|.++.
T Consensus 85 ~~~~~~l~~k~~~~~~Al~~~ 105 (140)
T smart00299 85 YEEAVELYKKDGNFKDAIVTL 105 (140)
T ss_pred HHHHHHHHHhhcCHHHHHHHH
Confidence 556666666666666666554
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=68.65 E-value=58 Score=25.92 Aligned_cols=173 Identities=11% Similarity=0.037 Sum_probs=89.2
Q ss_pred hhcCCCCCChhhcchhhcCcchhh----hHHHHHHHHhCCHHHHHHHHHHHHhcC---C-CCChhhHHHHHHHHHhcCCH
Q 045820 17 VDSPSRSPSAAESLDLKENPRSLQ----AQRFVDKIKASPLKERIDIFNSIKKDG---T-NWSVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~----~~~l~~~~~~~~~~~a~~~~~~m~~~g---~-~~~~~~~~~li~~~~~~~~~ 88 (225)
..+.-+.|+++...+........+ +-..+.+++.++.+++....+..++.- . ......|........+.-.+
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L 84 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQL 84 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHH
Confidence 345567777777555555544322 233444557888888888777665431 0 11233344433333333333
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHhhC----------------------C----CCCCHHhHHHHHHHHHhcCCHHH
Q 045820 89 DTAVKFFSNHLMVGR-VEEAYEMLMNVKND----------------------G----LKPDVYTYTAIMDGFCKVGRSNE 141 (225)
Q Consensus 89 ~~a~~~~~~~~~~g~-~~~a~~~~~~m~~~----------------------g----~~p~~~~~~~ll~~~~~~g~~~~ 141 (225)
.+..++.+-...... ......+++...++ + ......+|..+.+.+.+.|.++.
T Consensus 85 ~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~ 164 (352)
T PF02259_consen 85 VELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQL 164 (352)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHH
Confidence 322222221100000 11111221111110 1 12244567788888888899988
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 142 AMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 142 a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
|...+.++.+.+...+. .+....-.-..-.-..|+.++|+..+++..+
T Consensus 165 A~~~l~~~~~~~~~~~~---------------~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 165 ALSALNRLFQLNPSSES---------------LLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHhccCCcccC---------------CCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888765422100 1223333334555567788889888888877
No 319
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.95 E-value=31 Score=22.55 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=46.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 78 LLMALVMLNEQDTAVKFFSNH--LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 78 li~~~~~~~~~~~a~~~~~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
+-+.+...++.+++..+++-+ ...|++++|..+.+.+ .-||...|-++ +-.|.|..+++..-+.+|-..|-
T Consensus 27 IAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg~ 99 (115)
T TIGR02508 27 IADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASGD 99 (115)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCCC
Confidence 333344444444444444433 5668888888776655 37899998876 44678888888888888887764
No 320
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=67.89 E-value=72 Score=26.69 Aligned_cols=21 Identities=10% Similarity=-0.126 Sum_probs=14.1
Q ss_pred HHHccCcHHHHHHHHHHHHhc
Q 045820 185 ALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 185 ~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|+.-.++|++|.+-++...+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344467888888877776543
No 321
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.54 E-value=14 Score=21.89 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=31.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 119 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
+.|+...++-++..+++..-.+++...+.+..+.|.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~ 39 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS 39 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 356777899999999999999999999999999886
No 322
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=67.53 E-value=59 Score=25.62 Aligned_cols=91 Identities=9% Similarity=-0.026 Sum_probs=66.2
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHH
Q 045820 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 127 (225)
+..|+...|..-|.+-.+.- .+|+..+..+-.++.... ...+..++..+|++..... +-|+.+-.
T Consensus 167 m~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a-------------~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 167 MALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQA-------------GQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred HHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc-------------CCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 48899999999998776652 345555666655554433 2235567778888887642 33677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+-.++...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 78889999999999999999999864
No 323
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=66.95 E-value=57 Score=25.20 Aligned_cols=135 Identities=13% Similarity=0.074 Sum_probs=89.7
Q ss_pred hhcCCCCCChhhcchhhcCcchhh----------hHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhc
Q 045820 17 VDSPSRSPSAAESLDLKENPRSLQ----------AQRFVDKIKASPLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~----------~~~l~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~ 85 (225)
...-.+.|++++|.+.|+.+.... +.......+.++.+.|+..+++..+. +-.|| ..|..-|.+.+..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHh
Confidence 344567899999998888755332 11122245999999999999887655 44443 3466666665543
Q ss_pred -------CCHHHHHHHHHHH--------------------------------------HhcCCHHHHHHHHHHHhhCC--
Q 045820 86 -------NEQDTAVKFFSNH--------------------------------------LMVGRVEEAYEMLMNVKNDG-- 118 (225)
Q Consensus 86 -------~~~~~a~~~~~~~--------------------------------------~~~g~~~~a~~~~~~m~~~g-- 118 (225)
.|...+.+-|..+ .+.|.+..|..-+++|.+.-
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 3444555555444 77899999999999998751
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 119 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
........-.+..+|-+.|-.++|...-.-+...
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 1112334667888999999888888776666543
No 324
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.71 E-value=23 Score=27.78 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=64.5
Q ss_pred HhhhcCCCCCChhhcch----hhcCcchhhhHHHHHHH----HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--
Q 045820 15 LLVDSPSRSPSAAESLD----LKENPRSLQAQRFVDKI----KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM-- 84 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~l~~~~----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 84 (225)
.=|.++...+++.+++. .+..+.+...+.+--|+ +.+.+..++++-....+.--+-+...|.++...|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34778888888888774 34445555444433332 899999999998887766445566668888877765
Q ss_pred ---cCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 045820 85 ---LNEQDTAVKFFSNH--LMVGRVEEAYEMLMNVK 115 (225)
Q Consensus 85 ---~~~~~~a~~~~~~~--~~~g~~~~a~~~~~~m~ 115 (225)
.|.+++|.++...- ....+-..|+++.++-+
T Consensus 168 LlPLG~~~eAeelv~gs~af~EeQr~~aL~~v~~~~ 203 (309)
T PF07163_consen 168 LLPLGHFSEAEELVVGSAAFTEEQRQEALQAVEEAR 203 (309)
T ss_pred HhccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 48888888876422 11123344455544443
No 325
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=66.19 E-value=1e+02 Score=27.83 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=66.7
Q ss_pred HHHHHHHHHH-hhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 105 EEAYEMLMNV-KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 105 ~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
++....+... ...|+..+......++... .|+...+..++++....|- ...+...+-.+... .+......|+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~--g~It~e~V~~lLG~---~d~~~If~Ll 253 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS--GKVAENDVRQMIGA---VDKQYLYELL 253 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHcc---cCHHHHHHHH
Confidence 4444444443 4568888887777777655 5999999999998877542 12333333333322 3455666777
Q ss_pred HHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 184 QALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
.++.. ++..+++.++++|...|+.+..
T Consensus 254 dAL~~-~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 254 TGIIN-QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCHHH
Confidence 77766 7899999999999999876653
No 326
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=66.00 E-value=42 Score=23.29 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=62.4
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHh
Q 045820 48 IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP--DVYT 125 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~ 125 (225)
...|+++.|++.|.+-... .+-+...||.--.++--.|+.++|.+=+++ |.++ .|-+. --.+
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~---------AleL------ag~~trtacqa 117 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNK---------ALEL------AGDQTRTACQA 117 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHH---------HHHh------cCccchHHHHH
Confidence 3789999999999887655 345778899999999777777666543322 2221 22221 1123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
|----..|...|+.+.|..=|+..-+.|-+
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 333344578889999999999988887764
No 327
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=65.64 E-value=85 Score=26.71 Aligned_cols=79 Identities=13% Similarity=0.198 Sum_probs=49.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHhhcC------------C--CCCHHHH-HHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVTLIQLLQRLEMG------------H--IPRTITF-NNVIQAL 186 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~l~~~~~~~------------~--~p~~~~~-~~li~~~ 186 (225)
..+|-+.|++-.|..-++.|..+|.+..+.| +.+++..++++|+....| + -||...| +-.+.-+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4567777777777777888888888888887 667777777777433222 1 2444443 3344444
Q ss_pred HccCcHHHHHHHHHH
Q 045820 187 CGVGKIHKALLLLFL 201 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~ 201 (225)
...++-+.|..+|+.
T Consensus 477 i~inde~naraLFet 491 (660)
T COG5107 477 IRINDEENARALFET 491 (660)
T ss_pred HHhCcHHHHHHHHHH
Confidence 555665666666653
No 328
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=65.50 E-value=1.1e+02 Score=28.17 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=62.6
Q ss_pred HHHHHHHHHHH-hhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHH
Q 045820 104 VEEAYEMLMNV-KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182 (225)
Q Consensus 104 ~~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~l 182 (225)
.+...+++.++ .+.|+..+......++... .|+...++.+++++.. +......|+..+..++.. .+......+
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia-~~~~~~IT~e~V~allg~---~~~~~I~~l 254 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLA-GAGPEGVTYERAVALLGV---TDSALIDEA 254 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh-hcCCCCCCHHHHHHHhcC---CCHHHHHHH
Confidence 34445555554 4467777777666665544 3788888888888774 222344555555544432 344555566
Q ss_pred HHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 183 IQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
+.+.. .++...++.+++++.+.|..|.
T Consensus 255 idAL~-~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 255 VDALA-AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred HHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 66666 4678888888888888776543
No 329
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.34 E-value=51 Score=29.41 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH------HHHHHHH
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK------ALLLLFL 201 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~------a~~~~~~ 201 (225)
+++.||...|++-.+..+++......- |-+.-...||..|+.+.++|.++- |.+++++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~----------------~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~ 96 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNK----------------GDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ 96 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCc----------------CCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 899999999999999999998875431 112345678888999999998763 3333333
Q ss_pred HHhcCCCCCHHHHHHHHHHh
Q 045820 202 MYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 202 m~~~g~~p~~~~~~~ll~~~ 221 (225)
..+.-|..||..|+.+-
T Consensus 97 ---a~ln~d~~t~all~~~s 113 (1117)
T COG5108 97 ---ARLNGDSLTYALLCQAS 113 (1117)
T ss_pred ---hhcCCcchHHHHHHHhh
Confidence 34666888888887653
No 330
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.32 E-value=17 Score=23.75 Aligned_cols=53 Identities=8% Similarity=-0.005 Sum_probs=32.6
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVE 105 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~ 105 (225)
.+-.|++++|+.+.+.+ ..||...|-.|- -.+.|-.++...-+..|...|+.+
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg~p~ 101 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASGDPR 101 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCCCHH
Confidence 44667778777776555 367777776553 235566666666666666666543
No 331
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.16 E-value=14 Score=21.56 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
++...++.+.+... .-|-.--=.+|.+|...|++++|.+.++++.+.
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444555555431 234444456899999999999999999887653
No 332
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.01 E-value=84 Score=26.92 Aligned_cols=71 Identities=7% Similarity=0.011 Sum_probs=31.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 122 (225)
..|++.+|+.++++....+ ....++..+...+ -..+.+...++++.+...+....|+.++++|.+.|..|.
T Consensus 212 S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l-g~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 212 GDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI-GYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred cCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh-CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 4455555655555543221 1123333333332 122344444444443333334455555555555555444
No 333
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=64.94 E-value=1.1e+02 Score=27.68 Aligned_cols=89 Identities=11% Similarity=0.093 Sum_probs=50.1
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045820 65 KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144 (225)
Q Consensus 65 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 144 (225)
+.|+..+......++... .|++..+..+++++...|.-.--.+....|. |. ++......+++++.+ ++...++.
T Consensus 193 kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lL--G~-~d~~~If~LldAL~~-~d~~~al~ 266 (709)
T PRK08691 193 SEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMI--GA-VDKQYLYELLTGIIN-QDGAALLA 266 (709)
T ss_pred HcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHH--cc-cCHHHHHHHHHHHHc-CCHHHHHH
Confidence 445555555555554443 3666666666655432221000011112222 22 344455666777766 88999999
Q ss_pred HHHHHHHcCCCccHH
Q 045820 145 LLNEAIERGVTQNVV 159 (225)
Q Consensus 145 ~~~~m~~~g~~p~~~ 159 (225)
+++++.+.|..+...
T Consensus 267 ~l~~L~~~G~d~~~~ 281 (709)
T PRK08691 267 KAQEMAACAVGFDNA 281 (709)
T ss_pred HHHHHHHhCCCHHHH
Confidence 999999999877644
No 334
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=64.48 E-value=69 Score=25.25 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHH
Q 045820 173 IPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 173 ~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
.-|...|..++.+|.-.|+...+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 478889999999999888766543
No 335
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=64.46 E-value=11 Score=25.66 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=26.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 045820 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFND 77 (225)
Q Consensus 44 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 77 (225)
+++++-.|+.+.|.++++.++..|+.|....|..
T Consensus 4 L~Da~L~G~~~ra~riL~~L~~Eg~ep~~lLw~L 37 (125)
T PF14840_consen 4 LIDALLAGDAKRALRILQGLQAEGVEPPILLWAL 37 (125)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 5677789999999999999999999998877753
No 336
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.75 E-value=15 Score=25.63 Aligned_cols=46 Identities=20% Similarity=0.024 Sum_probs=36.7
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..++..+...++.-.|.++++++.+.+...+..|-..-|+.+.++|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4566666767666889999999999888888888888888887776
No 337
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.41 E-value=1.1e+02 Score=27.21 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=64.8
Q ss_pred HHHHHHHHH-HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 105 EEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 105 ~~a~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
++..+.+.+ +.+.|+..+......++.. -.|+...++.++++....|- ...|...+-+++.. ++......++
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~--~~It~~~V~~~Lg~---~~~~~i~~Ll 258 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGS--GQLQEAAVRQMLGS---VDRSHVFRLI 258 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHcC---CCHHHHHHHH
Confidence 444444443 3567888787777777653 35899999999988776542 12333333333321 4555666677
Q ss_pred HHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 184 QALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
.+... |+...++.++++|.+.|..|..
T Consensus 259 daL~~-~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 259 DALAQ-GDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 77666 7889999999999998877653
No 338
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.76 E-value=1e+02 Score=26.61 Aligned_cols=99 Identities=21% Similarity=0.213 Sum_probs=65.1
Q ss_pred CHHHHHHHHHH-HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 103 RVEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 103 ~~~~a~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
..++....+.+ +.+.|+..+......++... .|+...+...++.+...+-. .|...+.+... . +.......
T Consensus 176 s~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~---It~~~V~~~l~--~-~~~~~if~ 247 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTP---VTRKQVEEALG--L-PPQERLRG 247 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCC---CCHHHHHHHHC--C-CcHHHHHH
Confidence 34555555555 34578877777777766554 48999999999887765422 33333333321 1 44555666
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 182 VIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
+++++ ..+++++|..+++++...|..|.
T Consensus 248 Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 248 IAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 66766 45889999999999999986655
No 339
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=62.21 E-value=62 Score=24.00 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=61.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCCHHHHHHHHHHHhhCC---CCCCHH
Q 045820 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGRVEEAYEMLMNVKNDG---LKPDVY 124 (225)
Q Consensus 67 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~~~~a~~~~~~m~~~g---~~p~~~ 124 (225)
...|++..--.|-.+..+.|+..+|...|++. ...++...|...++.+-+.. -.||.
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 34667777777888888888888888888766 45677888888888776542 33433
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
--.+-..+.-.|...+|+.-|+.....-
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 3345567788888888999888888754
No 340
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=61.93 E-value=17 Score=24.98 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=33.8
Q ss_pred hcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChh
Q 045820 28 ESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVS 73 (225)
Q Consensus 28 ~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 73 (225)
.+.+++.-........++.++..|+..+++..++++.+.|..|...
T Consensus 5 ~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~ 50 (143)
T PF12169_consen 5 DVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQF 50 (143)
T ss_dssp HHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHH
Confidence 4445555566666778888999999999999999999999876553
No 341
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.92 E-value=90 Score=25.72 Aligned_cols=50 Identities=10% Similarity=0.004 Sum_probs=31.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHH
Q 045820 43 RFVDKIKASPLKERIDIFNSIKKDGTNWSVSD--FNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~ 96 (225)
.+..+++.|+.+-+..+ .+.|..|+... ..+.+...+..|+.+-+..+++
T Consensus 5 ~L~~A~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 56 (413)
T PHA02875 5 ALCDAILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK 56 (413)
T ss_pred HHHHHHHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 46677788887655444 45677776543 4455666667788776655543
No 342
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=61.35 E-value=16 Score=22.72 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=35.0
Q ss_pred cchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 36 PRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
|+......++..+.+++++++...+.++...|+.++ ...+.+.....+.
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~-~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSAS-DILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HH-HHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHh
Confidence 455667788889999999999999999988887654 4455566666665
No 343
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=60.47 E-value=26 Score=26.87 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=40.8
Q ss_pred cchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 29 SLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 29 a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
..++-++|...-...++..|..+++++|.+++.++.+.|+.|.. ..++++..+
T Consensus 230 VfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred hhhccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 33445556677777888899999999999999999999998654 455566665
No 344
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.44 E-value=1.1e+02 Score=26.36 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 157 (225)
...++++. ..++.++|+.+++++...|..|.
T Consensus 245 if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 245 LRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 44456666 55889999999999999997654
No 345
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.32 E-value=90 Score=26.66 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=35.5
Q ss_pred cchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 36 PRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
........++.+++.++++.|+.++.+|...|..|....-..+..++-.-|
T Consensus 242 ~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 242 IPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 333445567777888899999999998888888877765555555544444
No 346
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.27 E-value=85 Score=24.91 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=43.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 43 RFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
.....+..+++.+|..+|+...+.. +-+...--.+..+|...|+.+.|..++..+
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3444568899999999999887663 224566777889999999999999998887
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.20 E-value=84 Score=24.82 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=48.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH-------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc--
Q 045820 78 LLMALVMLNEQDTAVKFFSNH-------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV-- 136 (225)
Q Consensus 78 li~~~~~~~~~~~a~~~~~~~-------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-- 136 (225)
=|.+++.-+++.++....-+. .+.+....+.++-......--.-+...|.++..-|..+
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 477788888888877643222 67888888888888777532233455588877777664
Q ss_pred ---CCHHHHHHHH
Q 045820 137 ---GRSNEAMELL 146 (225)
Q Consensus 137 ---g~~~~a~~~~ 146 (225)
|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 8999998886
No 348
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.99 E-value=1.3e+02 Score=27.63 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 045820 127 TAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~ 147 (225)
+.+|.+|.+.++.++-.+..+
T Consensus 435 tlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHh
Confidence 444455555555544444433
No 349
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=59.11 E-value=29 Score=19.14 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=17.2
Q ss_pred HHHHHHHHHH-cCCCccHHHHHHHHHHhhcCCCCC
Q 045820 142 AMELLNEAIE-RGVTQNVVTLIQLLQRLEMGHIPR 175 (225)
Q Consensus 142 a~~~~~~m~~-~g~~p~~~t~~~l~~~~~~~~~p~ 175 (225)
+.+++.+|.+ .+...|..|....+++++.|+.|.
T Consensus 4 ~~d~l~eiS~lLntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 4 TLDVLHEISDLLNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHH
Confidence 3444444443 234445556666666666665443
No 350
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=59.04 E-value=15 Score=26.33 Aligned_cols=44 Identities=18% Similarity=0.006 Sum_probs=32.1
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
++..+....+.-.|.++++.+.+.+..++..|...-|+.+.++|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333334445578899999998888888888888888887766
No 351
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=59.01 E-value=43 Score=21.10 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 58 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
++|+--...|+..|+..|..+++...-.=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 78888899999999999999999886666666666776666
No 352
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=58.78 E-value=1e+02 Score=25.48 Aligned_cols=101 Identities=16% Similarity=0.072 Sum_probs=69.4
Q ss_pred HhcCCHHHHHHHHHHHhhC-----CC---------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKND-----GL---------KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQL 164 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~-----g~---------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 164 (225)
.+.|++..|...|++..+. +. ..-..+++.+.-+|.|.+++..|...-++....+-
T Consensus 219 fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~---------- 288 (397)
T KOG0543|consen 219 FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP---------- 288 (397)
T ss_pred HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC----------
Confidence 5667777777776664321 11 12345677788899999999999998888776543
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 165 LQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 165 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
+|+...--=-.+|...|+++.|...|+.+.+ +.|+...-+.=|..
T Consensus 289 ---------~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 289 ---------NNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred ---------CchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 3444443444788889999999999999986 56766555444433
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=58.11 E-value=75 Score=23.63 Aligned_cols=78 Identities=9% Similarity=-0.015 Sum_probs=51.7
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCHHh
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKN---DGLKPDVYT 125 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~ 125 (225)
.+..-+.|++.|-.+...+.--++...-.|-..|. . .+.+++..++.+..+ .+-.+|+..
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-k----------------rD~~Kt~~ll~~~L~l~~~~~~~n~ei 180 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-K----------------RDPEKTIQLLLRALELSNPDDNFNPEI 180 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-c----------------cCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 44445667777777777765545555555554443 3 444555555555433 334688999
Q ss_pred HHHHHHHHHhcCCHHHHH
Q 045820 126 YTAIMDGFCKVGRSNEAM 143 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~ 143 (225)
+.+|.+.|-+.|+++.|.
T Consensus 181 l~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHhcchhhhh
Confidence 999999999999999885
No 354
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=57.51 E-value=46 Score=22.19 Aligned_cols=42 Identities=19% Similarity=0.114 Sum_probs=29.5
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
+|+-..++...++|+++.+-|.++| ..+...-+.|-.-+.++
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~k 108 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKK 108 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 4556677888999999999999987 44555555555544443
No 355
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=57.34 E-value=1.3e+02 Score=25.97 Aligned_cols=93 Identities=11% Similarity=0.209 Sum_probs=54.5
Q ss_pred HHHHHHHhCCHHHHHH-HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 43 RFVDKIKASPLKERID-IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
.+...+..|++..|-+ +|+-++...-.|+....-+.| +...|++ +.+...+..... -+..
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~y----------------e~~~~~~s~~~~-~~~s 355 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYY----------------EQAYQDISDVEK-IIGT 355 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhH----------------HHHHHHhhchhh-hhcC
Confidence 3555678898877764 667777665566655444333 2333444 444444433322 1233
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
...+-.+++....+.|++++|..+-+-|....+
T Consensus 356 ~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 356 TDSTLRCRLRSLHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred CchHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence 445666777777777777777777777766555
No 356
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=57.24 E-value=20 Score=21.69 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=37.2
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
.+.+..++-.++.+.+.+++++..+.|..|.......+.-+..+.|+
T Consensus 5 ~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 5 IERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 35677788999999999999999988988888777778777765553
No 357
>PLN03025 replication factor C subunit; Provisional
Probab=57.12 E-value=98 Score=24.66 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=62.4
Q ss_pred HHHHHHHHHH-hhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 105 EEAYEMLMNV-KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 105 ~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
++....+.+. .+.|+..+......++..+ .|+...+...++......-. .|-..+.+.. + .+.......++
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~---i~~~~v~~~~--~-~~~~~~i~~~i 232 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGF---VNQENVFKVC--D-QPHPLHVKNIV 232 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCC---CCHHHHHHHc--C-CCCHHHHHHHH
Confidence 4444444443 4568887777888777654 48888888888744321111 1111121111 1 24445555666
Q ss_pred HHHHccCcHHHHHHHHHHHHhcCCCCCHHHHH
Q 045820 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 215 (225)
.+.. .+++++|...+.+|...|+.|......
T Consensus 233 ~~~~-~~~~~~a~~~l~~ll~~g~~~~~Il~~ 263 (319)
T PLN03025 233 RNCL-KGKFDDACDGLKQLYDLGYSPTDIITT 263 (319)
T ss_pred HHHH-cCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 6554 578999999999999999988755443
No 358
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.99 E-value=99 Score=24.63 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=69.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhH-------HHHHHHHHhcCCHHHHHHHHHHH-----------------
Q 045820 43 RFVDKIKASPLKERIDIFNSIKKDGTNWSVSDF-------NDLLMALVMLNEQDTAVKFFSNH----------------- 98 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-------~~li~~~~~~~~~~~a~~~~~~~----------------- 98 (225)
..-++.+.+++++|...+.++...|+..+..+- ..+...|...|+...-.++....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 344566788889999999888888877665544 34677778888776555544332
Q ss_pred -------HhcCCHHHHHHHHHHHhhCCCC-----CCHHhHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCccHHHHH
Q 045820 99 -------LMVGRVEEAYEMLMNVKNDGLK-----PDVYTYTAIMDGFCKVGRSNEAMELL----NEAIERGVTQNVVTLI 162 (225)
Q Consensus 99 -------~~~g~~~~a~~~~~~m~~~g~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~t~~ 162 (225)
.....++.-.++.....+.-.. .....=.-++..+-+.|.+.+|..+. .++++..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 2223333333333322211000 01111234778888999999998765 4556666666655443
No 359
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=56.89 E-value=1.3e+02 Score=26.00 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=65.8
Q ss_pred HHHHHHHHHHH-hhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 104 VEEAYEMLMNV-KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-TQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 104 ~~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
.++....+... .+.|+..+......+... -.|+...|...+++....+- .-...|...+-++... ++....-.
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~---~~~~~if~ 263 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGL---VDSSVIIE 263 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCC---CCHHHHHH
Confidence 34444454443 456877777777666653 45899999999998865432 1112333333333322 44445555
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
|+.+..+ |+.++|..+++++...|..|...
T Consensus 264 L~~ai~~-~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 264 FVEYIIH-RETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 6666655 88999999999999999877643
No 360
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=56.61 E-value=1.8e+02 Score=27.44 Aligned_cols=107 Identities=16% Similarity=0.194 Sum_probs=62.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHhc-CCHHHHHHHHHHH-------------H---
Q 045820 43 RFVDKIKASPLKERIDIFNSIKKDGTNW------SVSDFNDLLMALVML-NEQDTAVKFFSNH-------------L--- 99 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~~~~~m~~~g~~~------~~~~~~~li~~~~~~-~~~~~a~~~~~~~-------------~--- 99 (225)
.+-..+..+++.+|..+ |+++.+.. ++..|-.=+..|.++ ++.+---.++..+ .
T Consensus 700 ~ir~~Ld~~~Y~~Af~~---~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~~ 776 (928)
T PF04762_consen 700 GIRKLLDAKDYKEAFEL---CRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPPS 776 (928)
T ss_pred HHHHHHhhccHHHHHHH---HHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccccccc
Confidence 45556688999998877 44444433 334444445555554 4555444444444 1
Q ss_pred ----------hcCCHHHHHHHHHHHhhCCC-CCC-HHhHHHHHHHHHhcC--CHHHHHHHHHHHHHc
Q 045820 100 ----------MVGRVEEAYEMLMNVKNDGL-KPD-VYTYTAIMDGFCKVG--RSNEAMELLNEAIER 152 (225)
Q Consensus 100 ----------~~g~~~~a~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~ 152 (225)
......+.-.+.+.+.+.=. ..+ ..-...+|.+|++.+ ++++|+.+..++++.
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 11222344444444433211 333 334678899999999 999999999999966
No 361
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.39 E-value=49 Score=20.92 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 045820 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186 (225)
Q Consensus 107 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~ 186 (225)
+.++++.+.+.|+ -+....+.+-.+-...|+.+.|.+++..+. .|- .-|..++.+.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----------------------~aF~~Fl~aL 76 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKE----------------------GWFSKFLQAL 76 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----------------------cHHHHHHHHH
Confidence 4456666666663 333344444444446677778888887777 542 2566666776
Q ss_pred HccCcHHHH
Q 045820 187 CGVGKIHKA 195 (225)
Q Consensus 187 ~~~g~~~~a 195 (225)
-..|+-+-|
T Consensus 77 reT~~~~LA 85 (88)
T cd08819 77 RETEHHELA 85 (88)
T ss_pred HHcCchhhh
Confidence 666665444
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.00 E-value=47 Score=20.58 Aligned_cols=53 Identities=8% Similarity=0.082 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 045820 42 QRFVDKIKASPLKERIDIFNSIKKDGTNW--SVSDFNDLLMALVMLNEQDTAVKF 94 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~~~~~~a~~~ 94 (225)
+.-+..+..++.++|+..|+...+.-..+ -..+...++.+|+..|++.+++++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567888899999998876553322 234578899999999988777664
No 363
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=55.05 E-value=34 Score=23.74 Aligned_cols=43 Identities=28% Similarity=0.257 Sum_probs=33.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
|...++.|+ +.|-..+...++++|.++|+..+..+|+-+++-.
T Consensus 112 tlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 112 TLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred hhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 444444444 4566777889999999999999999999988754
No 364
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=54.52 E-value=1.6e+02 Score=26.20 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=44.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh---hc------------CCCCCHHHHHHHHHHHHc---cCc
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL---EM------------GHIPRTITFNNVIQALCG---VGK 191 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~---~~------------~~~p~~~~~~~li~~~~~---~g~ 191 (225)
...+.-.|.++.|.+.+-+ ..+...+++.+.+.+.-. .. .-.|...-+..||..|++ ..+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td 342 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITD 342 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccC
Confidence 4556677889999888877 445566777777666111 00 001112568899999986 567
Q ss_pred HHHHHHHHHHHHhcC
Q 045820 192 IHKALLLLFLMYEHG 206 (225)
Q Consensus 192 ~~~a~~~~~~m~~~g 206 (225)
..+|.+++-.+....
T Consensus 343 ~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 343 PREALQYLYLICLFK 357 (613)
T ss_dssp HHHHHHHHHGGGGS-
T ss_pred HHHHHHHHHHHHHcC
Confidence 889999988887654
No 365
>PRK09462 fur ferric uptake regulator; Provisional
Probab=54.52 E-value=65 Score=22.38 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=31.8
Q ss_pred HHHHHHcc-CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 182 VIQALCGV-GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 182 li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
++..+... +..-.|.++++.+.+.+...+..|...-|+.+.+.|
T Consensus 22 Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 22 ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33444433 345678899999998888888888888888887765
No 366
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=53.66 E-value=49 Score=20.14 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=39.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
+.|+++-...+++ .+...+. -+..+...+..|+. ++++.+.+.|..|+. .|..-+
T Consensus 6 ~~~~~~~~~~ll~----~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~---------------~~~~g~ 60 (89)
T PF12796_consen 6 QNGNLEILKFLLE----KGADINL--GNTALHYAAENGNL----EIVKLLLENGADINS---------------QDKNGN 60 (89)
T ss_dssp HTTTHHHHHHHHH----TTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT----------------BSTTSS
T ss_pred HcCCHHHHHHHHH----CcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccc---------------cCCCCC
Confidence 4455444444433 3333343 21245555667775 444445556665333 222234
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
+.|.. .+..|+.+ +++.+.+.|..|+
T Consensus 61 t~L~~-A~~~~~~~----~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 61 TALHY-AAENGNLE----IVKLLLEHGADVN 86 (89)
T ss_dssp BHHHH-HHHTTHHH----HHHHHHHTTT-TT
T ss_pred CHHHH-HHHcCCHH----HHHHHHHcCCCCC
Confidence 44444 34456544 6666777777665
No 367
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=52.66 E-value=1.9e+02 Score=26.64 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHH-hhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 103 RVEEAYEMLMNV-KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 103 ~~~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
..++..+.+.++ ..+|+..+......+.. .-.|+..+|+.++++....+- +..+...+..++ |. +|...+..
T Consensus 179 s~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~--~~It~~~V~~~L--G~-~d~~~i~~ 251 (830)
T PRK07003 179 PAGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSA--NEVTETAVSGML--GA-LDQTYMVR 251 (830)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcc--CCcCHHHHHHHh--CC-CCHHHHHH
Confidence 345555555554 34677666666655543 336889999999888775542 122333333332 22 55556666
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 182 VIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
++.++.. +++.+++.+++++...|+.+.
T Consensus 252 ll~aL~~-~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 252 LLDALAA-GDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 6765555 889999999999998887654
No 368
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=52.34 E-value=1.2e+02 Score=24.14 Aligned_cols=54 Identities=11% Similarity=0.093 Sum_probs=40.0
Q ss_pred CCCccHHHHHHHHHHhhc--C----CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 153 GVTQNVVTLIQLLQRLEM--G----HIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 153 g~~p~~~t~~~l~~~~~~--~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
+..++..++.-++..... + ......+|..+...+.+.|+++.|...+..+...+
T Consensus 117 ~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 117 NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 346677777777733322 2 33566789999999999999999999999988643
No 369
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=52.29 E-value=1.2e+02 Score=24.35 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=46.1
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-HhcCC-HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 045820 59 IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-LMVGR-VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV 136 (225)
Q Consensus 59 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 136 (225)
+-....+.|++.+..+...++..+. |+...+.+-++.+ .-.++ .-...++ +.........+.. =+--+...
T Consensus 149 i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V-~~~v~~~~~~~~f----~l~dail~ 221 (334)
T COG1466 149 IKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDV-EEVVSDVAEFNIF----DLADALLK 221 (334)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHH-HHHHhccccCCHH----HHHHHHHC
Confidence 3455667778888777777777664 5555444444444 00111 1111111 1111111112221 12234456
Q ss_pred CCHHHHHHHHHHHHHcCCCccH
Q 045820 137 GRSNEAMELLNEAIERGVTQNV 158 (225)
Q Consensus 137 g~~~~a~~~~~~m~~~g~~p~~ 158 (225)
|+..+|..+++++...|..|-.
T Consensus 222 g~~~~a~~~l~~L~~~ge~p~~ 243 (334)
T COG1466 222 GDVKKALRLLRDLLLEGEEPLK 243 (334)
T ss_pred CCHHHHHHHHHHHHHcCCcHHH
Confidence 7778888888887777776533
No 370
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=51.76 E-value=39 Score=22.38 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHhhcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-TLIQLLQRLEMG 171 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~ 171 (225)
..+++.....+..-.|.++++.+.+.+...+.. +|++|=.+.+.|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 345666666666677777777777776665544 555555554444
No 371
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=50.85 E-value=87 Score=26.32 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=23.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCC---CChhhHHHHHHHHHhcCCHHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTN---WSVSDFNDLLMALVMLNEQDTAVKF 94 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~~~~~~a~~~ 94 (225)
.|+.|+....+.+|+.-.+.|-. .=..+|+-|=++|.-.+|+++|++.
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 34566666666666655555432 1122344444444445555555554
No 372
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=50.79 E-value=90 Score=22.35 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=38.4
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHhhcCC
Q 045820 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV-TLIQLLQRLEMGH 172 (225)
Q Consensus 114 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~~ 172 (225)
+++.|++++..-- +++..+...++.-.|.++++.+.+.+..++.. +|++|=.+.+.|+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 4566776665444 44555555666678899999998887665554 5677766665554
No 373
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=50.74 E-value=76 Score=23.48 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=11.7
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 045820 135 KVGRSNEAMELLNEAIER 152 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~~~ 152 (225)
+.|+++.|++.++-|.+.
T Consensus 133 ~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 133 RKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 446777777777766553
No 374
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=50.53 E-value=83 Score=21.87 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=43.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
+..|+++.|++.|.+-.. +.| ....||.--.++.-.|+.++|++=+++..+.
T Consensus 54 aE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 677888888888887765 344 6778999999999999999999999888764
No 375
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.40 E-value=1.7e+02 Score=25.06 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=43.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
..|++..++..++.+....- +..+...+-.++... ..+....+.+. ...++.+.|..++.+|...|..|....=..
T Consensus 208 s~GdlR~aln~Le~l~~~~~--~~It~e~V~~~l~~~-~~~~i~~li~s-i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l 283 (472)
T PRK14962 208 ASGGLRDALTMLEQVWKFSE--GKITLETVHEALGLI-PIEVVRDYINA-IFNGDVKRVFTVLDDVYYSGKDYEVLIQQA 283 (472)
T ss_pred hCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHcCC-CHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34666666666665443211 112333232332222 22444444444 366777778888777777777666555444
Q ss_pred HHHHHHhcC
Q 045820 129 IMDGFCKVG 137 (225)
Q Consensus 129 ll~~~~~~g 137 (225)
+..++-..|
T Consensus 284 ~~~~~edi~ 292 (472)
T PRK14962 284 IEDLVEDLE 292 (472)
T ss_pred HHHHHHHcc
Confidence 444444444
No 376
>PF08564 CDC37_C: Cdc37 C terminal domain; InterPro: IPR013873 Cdc37 is a protein required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the C-terminal domain whose function is unclear. It is found C-terminal to the Hsp90 chaperone (heat shock protein 90) binding domain IPR013874 from INTERPRO and the N-terminal kinase binding domain of Cdc37 IPR013855 from INTERPRO []. ; PDB: 1US7_B.
Probab=49.18 E-value=13 Score=24.07 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=18.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045820 79 LMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119 (225)
Q Consensus 79 i~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 119 (225)
+..+.+.++++...++|..| .+++|..++..+.+.|+
T Consensus 28 mq~Alet~~ld~vnkVl~~M----~veeAE~~v~~~~esGi 64 (99)
T PF08564_consen 28 MQKALETGDLDEVNKVLGKM----PVEEAEYHVERCIESGI 64 (99)
T ss_dssp ------------HHHHHT------SSSHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHhC----CHHHHHHHHHHHHhCCc
Confidence 45567778888888888887 67788888888877774
No 377
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=48.97 E-value=51 Score=21.58 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 045820 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 137 (225)
-.|.++++.+.+.+..++..|---.|+.+.+.|
T Consensus 17 ~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 17 LTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 344444444444444444444333344444444
No 378
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=48.86 E-value=1e+02 Score=23.27 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHhhCCCC-------CCHHhHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 045820 103 RVEEAYEMLMNVKNDGLK-------PDVYTYTAIMDGFCKVG---------RSNEAMELLNEAIERGVTQNVVTLIQLLQ 166 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~-------p~~~~~~~ll~~~~~~g---------~~~~a~~~~~~m~~~g~~p~~~t~~~l~~ 166 (225)
..+.|..++..|--..++ -...-|-++-.+|+++| +.+.-..+++...+.|++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~----------- 204 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVE----------- 204 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCC-----------
Confidence 578888888888644222 24556889999999998 456667777777777764
Q ss_pred HhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 167 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+.=...|+++|+.-...-++++..+++..++
T Consensus 205 ------kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 205 ------KVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ------eeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 1233578888888777888888888887764
No 379
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.50 E-value=83 Score=21.26 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
..-.+++-..++.-+ .+.++|..|.++|+-... .-|...-.-+.+.|++++|..+|..
T Consensus 66 ~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 66 ERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344444444444333 899999999998887754 4588888889999999999999975
No 380
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=48.26 E-value=51 Score=27.87 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=81.8
Q ss_pred CCCCChhhcchhhcCcch-hhhHHHHHHH----------H--hCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 21 SRSPSAAESLDLKENPRS-LQAQRFVDKI----------K--ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~-~~~~~l~~~~----------~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
.+.=++++|.++.+.+.. ..+...+... + -..+++-..+++.+.+.| .+| ....-|+.|.+.++
T Consensus 25 ~~~vd~~eav~y~k~~p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~ 101 (480)
T TIGR01503 25 GKDVDLQDAVDYHKSIPAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNR 101 (480)
T ss_pred cccCCHHHHHHHHHhCCccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeeccccccc
Confidence 344467788887777543 4444444322 1 235788888888888886 223 34556899999999
Q ss_pred HHHHHHHHHHHHh------------cCCHHH--------------------HHHHHHHHhhCCCCC---CHHhHHHHHHH
Q 045820 88 QDTAVKFFSNHLM------------VGRVEE--------------------AYEMLMNVKNDGLKP---DVYTYTAIMDG 132 (225)
Q Consensus 88 ~~~a~~~~~~~~~------------~g~~~~--------------------a~~~~~~m~~~g~~p---~~~~~~~ll~~ 132 (225)
++.|..-+++-.+ +.-++. +..+++-+...|+.. ...+||. -
T Consensus 102 y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtpDarlL~e~~~a~G~~a~EGG~ISYnl---P 178 (480)
T TIGR01503 102 YDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTPDARLLAEIILAGGFTSFEGGGISYNI---P 178 (480)
T ss_pred HHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCCcHHHHHHHHHHcCCCccCCCcceecc---c
Confidence 9999998876511 222233 344444444444332 2233433 2
Q ss_pred HHhc-------CCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 045820 133 FCKV-------GRSNEAMELLNEAIERGVTQNVVTLIQL 164 (225)
Q Consensus 133 ~~~~-------g~~~~a~~~~~~m~~~g~~p~~~t~~~l 164 (225)
|+|. .+|+.+.++.....+.|+.+|..+|..|
T Consensus 179 YsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 179 YAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Confidence 3321 2477777777776777877777766644
No 381
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.22 E-value=1.5e+02 Score=24.17 Aligned_cols=65 Identities=11% Similarity=0.227 Sum_probs=36.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVY---TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ-NVVTLIQLL 165 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l~ 165 (225)
.+.|++.+|.+.|..+.+. .|=.. .-..+|.++....-+.+...++.+--+....- -...|++.+
T Consensus 286 RklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
Confidence 3557777777777766543 22111 23457777777777777766665554433322 223555544
No 382
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=48.11 E-value=81 Score=21.00 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=41.1
Q ss_pred HHHHHHHHHHH-HcCCCc-cHHHHHHHHHHhhcCCCCCHHHH----HHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 140 NEAMELLNEAI-ERGVTQ-NVVTLIQLLQRLEMGHIPRTITF----NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 140 ~~a~~~~~~m~-~~g~~p-~~~t~~~l~~~~~~~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
+++.+.+.+++ ..|+.| |...=-++...++.+..|+.... +.-+.-..-.|+.+.....+=.+.. |...|...
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~~~~~~d~g~e~~~~t~~Ge~~~~~~~ll~q~~-g~~~d~~~ 84 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSDEDIKDDSGLELNWKTFTGEYDDIYEALLKQRY-GPELDDEE 84 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCCCccCCCCCeEEeeeeecCchHHHHHHHHHHHh-CCCCCHHH
Confidence 44566666665 457777 66555555555555544431100 1111222222555554443333333 55556666
Q ss_pred HHHHHHHhhcCC
Q 045820 214 HDMLIKKLDQQP 225 (225)
Q Consensus 214 ~~~ll~~~~~~g 225 (225)
+...+++....|
T Consensus 85 l~~~~~~Hl~rG 96 (113)
T PF08870_consen 85 LPKYFKLHLDRG 96 (113)
T ss_pred HHHHHHHHHHHh
Confidence 666665554433
No 383
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.11 E-value=52 Score=22.37 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHH
Q 045820 105 EEAYEMLMNVKNDGLKPDVYT-YTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
++..++|..|.++||-..... |...-.-+-..|++.+|..+|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 446778999999988776544 6777777788899999999986
No 384
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=47.98 E-value=1.3e+02 Score=23.32 Aligned_cols=102 Identities=12% Similarity=0.169 Sum_probs=57.4
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
+..+.+-..++.+-.+..+++-+..-...++ +...||...|..-++.-...-.+-.+..+|+-.. .|.......
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d----~PhP~~v~~ 244 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCD----EPHPLLVKK 244 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccC----CCChHHHHH
Confidence 3333333444445455556655555554443 4456776666666554422222223333333222 466666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVTQN 157 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 157 (225)
++..|.+ +++++|.+++.++-+.|..|.
T Consensus 245 ml~~~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 245 MLQACLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHcCCCHH
Confidence 7766554 568889999988888888753
No 385
>PRK14700 recombination factor protein RarA; Provisional
Probab=47.95 E-value=1.4e+02 Score=23.77 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=33.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 43 RFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
.+...+|-.+++.|+-.+.+|.+.|..|....-..++-+.-.-|.
T Consensus 132 Af~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 132 AFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 345556778888888888888888888888777777777766664
No 386
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.28 E-value=1.6e+02 Score=24.15 Aligned_cols=49 Identities=8% Similarity=-0.133 Sum_probs=32.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
.+|.+.+|-..|+++.+. .+-|..+++-.=++|.-.|+.+.-...++++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kI 163 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKI 163 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHh
Confidence 566777777777777766 4667777777777776666655444444433
No 387
>PLN03025 replication factor C subunit; Provisional
Probab=46.19 E-value=1.5e+02 Score=23.60 Aligned_cols=86 Identities=12% Similarity=0.174 Sum_probs=45.3
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 045820 65 KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143 (225)
Q Consensus 65 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 143 (225)
+.|+..+......++..+ .|++..+...++..... +..+ ...+ .++ .| .+....-..++++.. .+++++|.
T Consensus 173 ~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~-~~~v-~~~--~~-~~~~~~i~~~i~~~~-~~~~~~a~ 244 (319)
T PLN03025 173 AEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVN-QENV-FKV--CD-QPHPLHVKNIVRNCL-KGKFDDAC 244 (319)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCC-HHHH-HHH--cC-CCCHHHHHHHHHHHH-cCCHHHHH
Confidence 445555555555554433 35555555555533211 1110 0001 111 12 233334455555554 57899999
Q ss_pred HHHHHHHHcCCCccH
Q 045820 144 ELLNEAIERGVTQNV 158 (225)
Q Consensus 144 ~~~~~m~~~g~~p~~ 158 (225)
..+.+|...|..|..
T Consensus 245 ~~l~~ll~~g~~~~~ 259 (319)
T PLN03025 245 DGLKQLYDLGYSPTD 259 (319)
T ss_pred HHHHHHHHcCCCHHH
Confidence 999999999987653
No 388
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=46.03 E-value=50 Score=19.86 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=27.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR 138 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 138 (225)
...|+.+.+.+++++..+.|..|.....+.+.-+..+.|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888777777777666666666665553
No 389
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.85 E-value=47 Score=20.68 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=25.6
Q ss_pred HhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 124 YTYT-AIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 124 ~~~~-~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
.-|| ++++-+.++.-.++|+++++.|.+.|-
T Consensus 31 ~gy~PtV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 31 SGYNPTVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred CCCCchHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 3344 467788899999999999999999985
No 390
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.23 E-value=87 Score=20.56 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=25.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
-|..|+.-|-..|..++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 589999999999999999999999987
No 391
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=45.18 E-value=1.1e+02 Score=21.65 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=11.3
Q ss_pred HhcCCHHHHHHHHHHHhhC
Q 045820 99 LMVGRVEEAYEMLMNVKND 117 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~ 117 (225)
...|++++|.++|++..+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 5556666666666666553
No 392
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.06 E-value=1e+02 Score=21.41 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=44.2
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHhhcCC
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV-VTLIQLLQRLEMGH 172 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~ 172 (225)
+...+++.|.+++..= -.++..+.+.++.-.|+++++++++.+...+. .+|++|=.+.+.|+
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4455677887776533 45678888888779999999999998776644 46777766666654
No 393
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.01 E-value=1.5e+02 Score=23.30 Aligned_cols=48 Identities=17% Similarity=-0.065 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhCCC----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 104 VEEAYEMLMNVKNDGL----KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
.+.|.+.|+.....+. ..+...-..++....+.|+.+.-..+++...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~ 197 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN 197 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc
Confidence 4566677777665322 33455556677778888876665566555554
No 394
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=44.95 E-value=50 Score=20.63 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=28.4
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045820 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM 100 (225)
Q Consensus 67 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 100 (225)
.+.|+...||.+++.....+.+.-|..++.....
T Consensus 11 ~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~ 44 (83)
T PF10963_consen 11 TFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVD 44 (83)
T ss_pred EeccCHHHHHHHHHHhccCCCchHHHHHHHHHcC
Confidence 3589999999999999999998888887776543
No 395
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.18 E-value=2.4e+02 Score=26.36 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=42.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKP--DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 158 (225)
..+..+.+.++-.......+.| .+.+..+-|+.+.|.+++..|-.+-.++.+.+-.|..
T Consensus 1059 ~~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1059 KKPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred CCchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 3455566655555555555666 3456777889999999999999999999988876543
No 396
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=43.47 E-value=1.2e+02 Score=22.51 Aligned_cols=59 Identities=7% Similarity=-0.026 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHhcCC--------------CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGT--------------NWSVSDFNDLLMALVMLNEQDTAVKFFSN 97 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~--------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 97 (225)
.++..+..+-+.-++.+...+++.|.+..+ .+.-..-|.....|.+.|.+|.|..++++
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345556666688888888888888766422 33334455556666666666666666554
No 397
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=43.02 E-value=2.6e+02 Score=25.49 Aligned_cols=101 Identities=20% Similarity=0.151 Sum_probs=59.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CccH--HHHHHHHHH-------hhcCCCCCHHHHHHHHHHH
Q 045820 118 GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV--TQNV--VTLIQLLQR-------LEMGHIPRTITFNNVIQAL 186 (225)
Q Consensus 118 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~~--~t~~~l~~~-------~~~~~~p~~~~~~~li~~~ 186 (225)
++..+..+...++... .|+..+++.+++.+..... ..+. .|...+-+. ....-.+...+.++++.+.
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksi 269 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSL 269 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHH
Confidence 4556666777766544 7999999999988654211 1111 222222111 1222223344444444443
Q ss_pred HccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
+.++++.|..++..|.+.|.-|....-..++.+.
T Consensus 270 -rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~as 303 (725)
T PRK13341 270 -RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAAS 303 (725)
T ss_pred -hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4588999999999999999888766655555443
No 398
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=42.90 E-value=96 Score=22.43 Aligned_cols=45 Identities=13% Similarity=0.327 Sum_probs=29.8
Q ss_pred HHHHHHhh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 109 EMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 109 ~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
++++.+.+ .|+.|...++.-++..+++.-..+.+.++|+.+...|
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 34455553 6666777777777777777667777777777766555
No 399
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=42.82 E-value=68 Score=18.65 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
...+.....|++-+|-++++.+-...-.+....+..+|...+
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~ 45 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAV 45 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHH
Confidence 344556689999999999998865433446666777776653
No 400
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.74 E-value=2.6e+02 Score=26.13 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=28.7
Q ss_pred HHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
-.|......+.+..+++.+....-.++..-.+.++.-|++
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 4566666677788888888776666777777777777664
No 401
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.59 E-value=1.1e+02 Score=28.46 Aligned_cols=71 Identities=8% Similarity=0.102 Sum_probs=37.8
Q ss_pred hcCCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 18 DSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN 97 (225)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 97 (225)
.-+.+.|.++-|+++.+..+.. +--++..|+++.|++.-..+- +..+|..|...-.++|+.+-|...|+.
T Consensus 628 aYLqKkgypeiAL~FVkD~~tR----F~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~ 697 (1202)
T KOG0292|consen 628 AYLQKKGYPEIALHFVKDERTR----FELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQR 697 (1202)
T ss_pred HHHHhcCCcceeeeeecCcchh----eeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3344445555555444443321 111335666666665543332 455677777777777777766666655
Q ss_pred H
Q 045820 98 H 98 (225)
Q Consensus 98 ~ 98 (225)
.
T Consensus 698 ~ 698 (1202)
T KOG0292|consen 698 T 698 (1202)
T ss_pred h
Confidence 4
No 402
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=42.04 E-value=46 Score=19.68 Aligned_cols=45 Identities=11% Similarity=0.232 Sum_probs=30.0
Q ss_pred CChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 045820 24 PSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTN 69 (225)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~ 69 (225)
..+++|.++..+-...+...+-..++-| +..|-++.++|.+.|+-
T Consensus 6 ~ly~~a~~~V~~~~~~S~S~lQR~~rIG-ynrAariid~LE~~GiV 50 (65)
T PF09397_consen 6 PLYEEAVEFVIEEGKASISLLQRKFRIG-YNRAARIIDQLEEEGIV 50 (65)
T ss_dssp TTHHHHHHHHHHCTCECHHHHHHHHT---HHHHHHHHHHHHHCTSB
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHhCCC-HHHHHHHHHHHHHCCCC
Confidence 4466676666665555555555555554 67888999999999873
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=41.71 E-value=1.4e+02 Score=22.78 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=38.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
..++.+++.+++...++=.+.+ +-|.-.-..++..+|-.|++++|..-++-.
T Consensus 10 eLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3568889999998876655552 335556777899999999999888766554
No 404
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=41.59 E-value=2.1e+02 Score=23.89 Aligned_cols=164 Identities=12% Similarity=0.070 Sum_probs=87.3
Q ss_pred HhCCHHHHHHHHHHHH-----hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCHHHHHHHHHH--HhhCCCC
Q 045820 49 KASPLKERIDIFNSIK-----KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-LMVGRVEEAYEMLMN--VKNDGLK 120 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~-----~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~~g~~~~a~~~~~~--m~~~g~~ 120 (225)
..++.+.|++-+-... .+....+..+...+++.|...++|+.-.+...-+ -+.|+...|....-+ |.--.-.
T Consensus 24 a~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 24 AQIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCC
Confidence 4566666665433222 1245556667777888888888887766655444 344555444432111 1111112
Q ss_pred CCHHh-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH----------
Q 045820 121 PDVYT-------------------------YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------- 165 (225)
Q Consensus 121 p~~~~-------------------------~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~---------- 165 (225)
||..| --.+..-+-..|++++|..++.+.+ +.||.++=
T Consensus 104 ~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLE 176 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILE 176 (439)
T ss_pred CCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHH
Confidence 22211 1234455566677777777765543 22333332
Q ss_pred --------------HHhhcC------CCCCH-----HHHHHHHHHHHccCcHHHHHHHHHHHHhcC-CCCCHHHHHHHHH
Q 045820 166 --------------QRLEMG------HIPRT-----ITFNNVIQALCGVGKIHKALLLLFLMYEHG-KIPSRTSHDMLIK 219 (225)
Q Consensus 166 --------------~~~~~~------~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~ 219 (225)
.-..+. -.||. .-|+.+|....+.+.+=.+-+.++.....| ++-|..-|...+.
T Consensus 177 QmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 177 QMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLR 256 (439)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhh
Confidence 000111 12343 248888888888888888888888887643 4555555554443
No 405
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=41.54 E-value=2.2e+02 Score=24.21 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=30.8
Q ss_pred hcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 169 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
.+.+.||..+.|.+-+-++..-..+....+|+...+++
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa 213 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA 213 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45778999998888888888888888888888877765
No 406
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=41.48 E-value=1e+02 Score=25.19 Aligned_cols=47 Identities=17% Similarity=0.086 Sum_probs=32.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
.+.|.+++|..+|..-.. ..| +.+++..-..||.+...+..|+.=-+
T Consensus 108 FKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 456788888888876554 345 77777777778888887776654333
No 407
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=41.37 E-value=54 Score=19.30 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=16.9
Q ss_pred HHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 186 LCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
+.+++.+-.+..+.+.+...|...+..+...-+++.-+
T Consensus 7 L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~ 44 (66)
T PF08461_consen 7 LAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMER 44 (66)
T ss_pred HHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444433
No 408
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.98 E-value=89 Score=19.48 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=24.0
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHH
Q 045820 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 216 (225)
+++-+.++.--++|+++++-|.++| ..+...-+.
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~ 70 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKA 70 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4555667788899999999999887 334443333
No 409
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=40.68 E-value=1.3e+02 Score=21.42 Aligned_cols=51 Identities=25% Similarity=0.434 Sum_probs=37.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP---DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
...++.+++..+++.+.- ..| ...++...+ +.+.|++.+|.++|+++...+
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC
Confidence 556778888888888765 244 444555544 688999999999999987654
No 410
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=40.56 E-value=34 Score=23.20 Aligned_cols=29 Identities=17% Similarity=0.542 Sum_probs=22.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
-.|+...|.++++.++.+|+.|....|..
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw~L 37 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLWAL 37 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 56999999999999999999998887754
No 411
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=40.47 E-value=2.5e+02 Score=24.51 Aligned_cols=136 Identities=10% Similarity=0.045 Sum_probs=83.6
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh-----hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ-----AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD 89 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~ 89 (225)
.+++.++.+...+-+.++-.+|...+ +-.+..++...+.+.-..+|+++.+..+. |++.-.-|.. +-..++.+
T Consensus 71 ~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en~n~~l~~lWer~ve~dfn-Dvv~~ReLa~-~yEkik~s 148 (711)
T COG1747 71 TLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKENGNEQLYSLWERLVEYDFN-DVVIGRELAD-KYEKIKKS 148 (711)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCchhhHHHHHHHHHhcch-hHHHHHHHHH-HHHHhchh
Confidence 45555666555555544444443333 23355556666778888888887766433 3333333333 33335555
Q ss_pred HHHHHHHHH--------------------Hh--cCCHHHHHHHHHHHhh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 90 TAVKFFSNH--------------------LM--VGRVEEAYEMLMNVKN-DGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 90 ~a~~~~~~~--------------------~~--~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
++..+|.+. .. ..+.+..+.+...+.. .|...-...+.-+-.-|....++++|.+++
T Consensus 149 k~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Il 228 (711)
T COG1747 149 KAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRIL 228 (711)
T ss_pred hHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHH
Confidence 555555444 33 5667777777666643 456666777888889999999999999999
Q ss_pred HHHHHc
Q 045820 147 NEAIER 152 (225)
Q Consensus 147 ~~m~~~ 152 (225)
....+.
T Consensus 229 k~il~~ 234 (711)
T COG1747 229 KHILEH 234 (711)
T ss_pred HHHhhh
Confidence 865544
No 412
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.31 E-value=1.5e+02 Score=21.87 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDV-------YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
--++.|+.+|+.+++.--.|.. ..--..+-.|.+.|.+++|.+++++..+ .|+......-+
T Consensus 83 TPLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL 150 (200)
T cd00280 83 TPLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKL 150 (200)
T ss_pred ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHH
Confidence 4467888888888765333311 1123456689999999999999999887 34444443333
No 413
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.14 E-value=2e+02 Score=23.36 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhh-CCCCCCHHhHHH
Q 045820 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV--GRVEEAYEMLMNVKN-DGLKPDVYTYTA 128 (225)
Q Consensus 52 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--g~~~~a~~~~~~m~~-~g~~p~~~~~~~ 128 (225)
+.+....+++.+++++..|= | ...|..+.++--..+++.|.+. ..+++-.+..+..++ .|-.--...+-.
T Consensus 37 ~~~~~e~l~~~Ird~~Map~---Y----e~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~ 109 (393)
T KOG0687|consen 37 KAAAREKLLAAIRDEDMAPL---Y----EYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLR 109 (393)
T ss_pred CHHHHHHHHHHHHhcccchH---H----HHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44444556666666554431 1 1222344444444445554222 222222222333322 222222345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH----HcCCCccHHHHHH
Q 045820 129 IMDGFCKVGRSNEAMELLNEAI----ERGVTQNVVTLIQ 163 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~t~~~ 163 (225)
.-.-||+.|+.+.|++.+.+.- ..|.+.|.+.+.+
T Consensus 110 kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~i 148 (393)
T KOG0687|consen 110 KAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKI 148 (393)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHH
Confidence 7788999999999988886654 3466655444433
No 414
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.24 E-value=1.7e+02 Score=22.31 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA----IERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
++.|...|..-.. ...-....--|-.-|.+.|++++|..+|+.+ .+.|.. .+...+.
T Consensus 161 L~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~-----------------~l~~~~l 221 (247)
T PF11817_consen 161 LEKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWW-----------------SLLTEVL 221 (247)
T ss_pred HHHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcH-----------------HHHHHHH
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+..|+.+.|+.+....+.=+|...
T Consensus 222 ~~l~~Ca~~~~~~~~~l~~~leLls~ 247 (247)
T PF11817_consen 222 WRLLECAKRLGDVEDYLTTSLELLSR 247 (247)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcC
No 415
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.68 E-value=2.8e+02 Score=24.56 Aligned_cols=99 Identities=13% Similarity=0.248 Sum_probs=62.8
Q ss_pred HHHHHHHHHH-hhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 105 EEAYEMLMNV-KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 105 ~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
++..+.+.+. .+.|+..+......++. .-.|+...+..++++....+- ....|+..+..+... .+......++
T Consensus 180 ~~i~~~L~~i~~~egi~i~~~al~~Ia~--~s~GdlR~aln~Ldql~~~~~-~~~It~~~v~~llg~---~~~~~i~~lv 253 (584)
T PRK14952 180 RTMRALIARICEQEGVVVDDAVYPLVIR--AGGGSPRDTLSVLDQLLAGAA-DTHVTYQRALGLLGA---TDVALIDDAV 253 (584)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhccC-CCCcCHHHHHHHHCC---CCHHHHHHHH
Confidence 4444444443 45677777766666543 345889999999999876432 334555555554422 3444445566
Q ss_pred HHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 184 QALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
.+. ..++...++.+++++...|..|.
T Consensus 254 ~al-~~~d~~~al~~l~~l~~~g~d~~ 279 (584)
T PRK14952 254 DAL-AADDAAALFGAIESVIDAGHDPR 279 (584)
T ss_pred HHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 644 45788999999999988886665
No 416
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.48 E-value=2.5e+02 Score=23.83 Aligned_cols=148 Identities=15% Similarity=0.119 Sum_probs=86.7
Q ss_pred HHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHH--HHHHH-----HHHhhC--C-CCCC---HH
Q 045820 60 FNSIKKDGTNWS--VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEE--AYEML-----MNVKND--G-LKPD---VY 124 (225)
Q Consensus 60 ~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~--a~~~~-----~~m~~~--g-~~p~---~~ 124 (225)
++++.+.|+++. ..+|-.+..+.-..+. -..++.+.+.++..+ +.+.. +.+.+. + ..++ ..
T Consensus 149 lk~liRkGiP~~~R~~VW~~~~g~~~~~~~----~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~ 224 (436)
T KOG2058|consen 149 LKRLIRKGIPPELRGEVWWVLSGARRQLNY----PGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQ 224 (436)
T ss_pred HHHHHHcCCChhhhhHHHHHHhcchhhccC----chhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHH
Confidence 556677787765 4456666663333332 344555544443321 22211 112222 1 1111 34
Q ss_pred hHHHHHHHHHhcC---------------------CHHHHHHHHHHHHHc-----------CCCccHHHHHHHH-------
Q 045820 125 TYTAIMDGFCKVG---------------------RSNEAMELLNEAIER-----------GVTQNVVTLIQLL------- 165 (225)
Q Consensus 125 ~~~~ll~~~~~~g---------------------~~~~a~~~~~~m~~~-----------g~~p~~~t~~~l~------- 165 (225)
+.--++.||+.+. .-++|+.++....+. |...|..++..++
T Consensus 225 ~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl 304 (436)
T KOG2058|consen 225 TLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKL 304 (436)
T ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHH
Confidence 5666677887773 135566666655543 3334555555555
Q ss_pred --HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 166 --QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 166 --~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
.+...|+..+..+++.+|..++..+..+.++++|+-+--.|.+...
T Consensus 305 ~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlf 352 (436)
T KOG2058|consen 305 SLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLF 352 (436)
T ss_pred HHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHH
Confidence 2234566678889999999999999999999999999877755444
No 417
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=38.22 E-value=46 Score=15.33 Aligned_cols=29 Identities=10% Similarity=0.006 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLM 80 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 80 (225)
|+.+.+..+|+++.... +-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 45678888888887653 346666666554
No 418
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=38.09 E-value=92 Score=19.23 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHHHh---hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 101 VGRVEEAYEMLMNVK---NDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~---~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.|+.+.|...|+.-. ..|+..++. ..+....+++|..+-.+|.+.
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~~ 68 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKMKTN 68 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHHHHH
Confidence 477788887777643 345444333 335556788999999988864
No 419
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=37.85 E-value=2.8e+02 Score=24.25 Aligned_cols=54 Identities=7% Similarity=-0.031 Sum_probs=40.1
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
+..++..+|.-+.+.-..+++++.. .. ...|..++++....|......-+.+.+
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i 366 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWI 366 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4456667788888888888888864 11 678899999999988876666655554
No 420
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=37.84 E-value=3.2e+02 Score=24.98 Aligned_cols=85 Identities=9% Similarity=0.105 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 130 (225)
|++++|.+++-+|-++ ...|..+.+.||+-.+.++++.=....+-+....-|+.|-+. -.+...|....
T Consensus 748 g~feeaek~yld~drr---------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~ 816 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR---------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAA 816 (1189)
T ss_pred cchhHhhhhhhccchh---------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4555555555544333 123445555555555555544311112222233333333321 23455566666
Q ss_pred HHHHhcCCHHHHHHHH
Q 045820 131 DGFCKVGRSNEAMELL 146 (225)
Q Consensus 131 ~~~~~~g~~~~a~~~~ 146 (225)
..|.+.|+.+.-.+.+
T Consensus 817 ~yY~~~~~~e~~~ecl 832 (1189)
T KOG2041|consen 817 KYYSYCGDTENQIECL 832 (1189)
T ss_pred HHHHhccchHhHHHHH
Confidence 7777777665544443
No 421
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=37.78 E-value=55 Score=19.24 Aligned_cols=44 Identities=7% Similarity=0.228 Sum_probs=29.2
Q ss_pred ChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 045820 25 SAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTN 69 (225)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~ 69 (225)
.+++|.++..+-...+...+-..++-| +..|-++.++|.+.|+-
T Consensus 6 ly~~a~~~V~~~~~~S~S~lQR~~~IG-ynrAariid~lE~~GiV 49 (63)
T smart00843 6 LYDEAVELVIETQKASTSLLQRRLRIG-YNRAARLIDQLEEEGIV 49 (63)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHhcc-hhHHHHHHHHHHHCcCC
Confidence 355666665555555555555555554 67788999999999863
No 422
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.46 E-value=2.7e+02 Score=23.97 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-------------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 045820 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGL-------------KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156 (225)
Q Consensus 90 ~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~-------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 156 (225)
.|.+++.+. ..|++..|...++.....+- ..+....-.++++. ..|+.+.|..+++++...|..|
T Consensus 201 ~al~~La~~-s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~ai-~~~d~~~al~~l~~L~~~g~~~ 278 (486)
T PRK14953 201 KALDLLAQA-SEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLL-LESDVDEAIKFLRTLEEKGYNL 278 (486)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCH
Confidence 444444443 44667777777766533221 11122233444444 4588999999999999989877
Q ss_pred cHH
Q 045820 157 NVV 159 (225)
Q Consensus 157 ~~~ 159 (225)
...
T Consensus 279 ~~i 281 (486)
T PRK14953 279 NKF 281 (486)
T ss_pred HHH
Confidence 644
No 423
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.39 E-value=3.2e+02 Score=24.81 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=64.5
Q ss_pred HHHHHHHHHHH-hhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHH
Q 045820 104 VEEAYEMLMNV-KNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182 (225)
Q Consensus 104 ~~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~l 182 (225)
.++..+.+... .+.|+..+......++.. -.|+...|..++++....| -...|...+..+.. ..+....-.+
T Consensus 179 ~eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIayg--~g~IT~edV~~lLG---~~d~e~IfdL 251 (702)
T PRK14960 179 VDEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIAYG--QGAVHHQDVKEMLG---LIDRTIIYDL 251 (702)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHhc---cCCHHHHHHH
Confidence 34444444443 456777777766666544 3589999999998877655 22344444444433 2444556667
Q ss_pred HHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 183 IQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
+.+..+ ++.+++.++++++.+.|..++
T Consensus 252 ldAI~k-~d~~~al~~L~el~~~g~d~~ 278 (702)
T PRK14960 252 ILAVHQ-NQREKVSQLLLQFRYQALDVS 278 (702)
T ss_pred HHHHHh-cCHHHHHHHHHHHHHhCCCHH
Confidence 777666 668889999999998887765
No 424
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.35 E-value=1.4e+02 Score=20.59 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=40.3
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 166 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
......+.|+.....+-++++-+.+|+..|.++|+-++.+ ..+....|-.+++
T Consensus 74 ~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 74 NLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred hhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 3445566799999999999999999999999999998753 2333335655554
No 425
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=37.34 E-value=2.1e+02 Score=22.80 Aligned_cols=118 Identities=16% Similarity=0.094 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHhhC----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 103 RVEEAYEMLMNVKND----GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
-.+.|..+|++..+. |..++...-.++.-+|-..+..-...++..-. ....+-=..+|..+.+.+...+.| ...
T Consensus 142 v~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~~prtl~eI~~~~-~v~~k~i~~~~~~l~k~L~~~~~~-~~p 219 (310)
T PRK00423 142 VREEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCKVPRTLDEIAEVS-RVSRKEIGRCYRFLLRELNLKLPP-TDP 219 (310)
T ss_pred HHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcCCCcCHHHHHHHh-CCCHHHHHHHHHHHHHHhCCCCCC-CCH
Confidence 346677777776553 44445555666666666666544333332221 111111123466666555433333 223
Q ss_pred HHHHHHHHHc-cCc----HHHHHHHHHHHHh----cCCCCCHHHHHHHHHHhhc
Q 045820 179 FNNVIQALCG-VGK----IHKALLLLFLMYE----HGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 179 ~~~li~~~~~-~g~----~~~a~~~~~~m~~----~g~~p~~~~~~~ll~~~~~ 223 (225)
. .+|.-|+. .+- .+.|..+++.+.+ .|-.|....-.++.-++..
T Consensus 220 ~-~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~~~ 272 (310)
T PRK00423 220 I-DYVPRFASELGLSGEVQKKAIEILQKAKEKGLTSGKGPTGLAAAAIYIASLL 272 (310)
T ss_pred H-HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHH
Confidence 3 33333333 332 2567888888865 3678888888777776643
No 426
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=37.05 E-value=99 Score=24.46 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
..+++|...|....+.-+...+.|...|...+... ..+|..+|..
T Consensus 43 ~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~--~~~A~~~F~~ 87 (297)
T PF02841_consen 43 AAVEKAVEHYEEQMEQRVKLPTETLEELLELHEQC--EKEALEVFMK 87 (297)
T ss_dssp HHHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH--HHHHHHHHHH
Confidence 34566666666633222233444556666666554 5566666664
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.38 E-value=2.5e+02 Score=23.23 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=42.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHh--cCCHHHHHHHHHHHHh
Q 045820 43 RFVDKIKASPLKERIDIFNSIKKDGTNWSVS--DFNDLLMALVM--LNEQDTAVKFFSNHLM 100 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~--~~~~~~a~~~~~~~~~ 100 (225)
.....+..+++..|.++|+.+.+. ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455567999999999999999887 655554 56666666654 3567889888887633
No 428
>PRK11906 transcriptional regulator; Provisional
Probab=36.35 E-value=2.7e+02 Score=23.72 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 103 RVEEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
+.+.|..+|++-.. +.||. .+|-..-..+.-.|+.++|.+.+++
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444443 23322 2233222333445556666666555
No 429
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.23 E-value=98 Score=22.79 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.3
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 181 NVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 181 ~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+..|.+.|.+++|.++++.....
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC
Confidence 4457789999999999999998763
No 430
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=35.91 E-value=1.8e+02 Score=21.65 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=33.0
Q ss_pred HhcCCHHHHHHHHHHHhhCC--------------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDG--------------LKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g--------------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
.+.-++.+..++++.|.+.. ..+--..-|.-...|.+.|.++.|..++++
T Consensus 143 hk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 143 HKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 44556677777777765431 223344567777888888888888888763
No 431
>PRK05907 hypothetical protein; Provisional
Probab=35.85 E-value=70 Score=25.58 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=30.0
Q ss_pred cCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCCh
Q 045820 34 ENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD-GTNWSV 72 (225)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~-g~~~~~ 72 (225)
........-.+++++-.|+..+|++++++|... |..|-.
T Consensus 201 ~~s~e~nIF~L~dai~~~~~~~Al~il~~Ll~~~ge~p~~ 240 (311)
T PRK05907 201 VKKEAASLWKLRDALLRRDRVEGHSLLRSLLSDMGEDPLG 240 (311)
T ss_pred cCcccccHHHHHHHHHccCHHHHHHHHHHHHHhcCCChHH
Confidence 334444455688888999999999999999988 877653
No 432
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=35.81 E-value=70 Score=26.14 Aligned_cols=71 Identities=18% Similarity=0.083 Sum_probs=41.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHH---------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 131 DGFCKVGRSNEAMELLNEAIERGVTQ-NVVTLIQLL---------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l~---------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
+-|.+.|.+++|.++|..-.. +.| |.+++..-. ...+..+..-+..=...+.+|.+.+.-.+++....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 357899999999999987654 344 445443222 11222232233333455677777776666666665
Q ss_pred HHH
Q 045820 201 LMY 203 (225)
Q Consensus 201 ~m~ 203 (225)
+..
T Consensus 183 EAK 185 (536)
T KOG4648|consen 183 EAK 185 (536)
T ss_pred HHH
Confidence 554
No 433
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=35.64 E-value=1.6e+02 Score=20.87 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDG-TNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
.+.++-+.++.++.+.| +..++...-.-|....+.++++.|.++...+
T Consensus 68 ~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L 116 (157)
T PF07304_consen 68 DDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIHVDL 116 (157)
T ss_dssp HHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35555555544443444 3333333334444455667888888887776
No 434
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.62 E-value=1.3e+02 Score=19.94 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=46.6
Q ss_pred hCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHH
Q 045820 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAI 129 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 129 (225)
....++|..+.+.+...+. ..-...||....- ...|++++|+. .......||...|-++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~---~~E~v~lIr~~sL--------------mNrG~Yq~ALl----~~~~~~~pdL~p~~AL 77 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE---MEEVVALIRLSSL--------------MNRGDYQEALL----LPQCHCYPDLEPWAAL 77 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT---THHHHHHHHHHHH--------------HHTT-HHHHHH----HHTTS--GGGHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHH--------------HhhHHHHHHHH----hcccCCCccHHHHHHH
Confidence 3457888888888877754 2223333333211 34456666621 1223346888888765
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
+-.|.|-.++++..+.++-..|-
T Consensus 78 --~a~klGL~~~~e~~l~rla~~g~ 100 (116)
T PF09477_consen 78 --CAWKLGLASALESRLTRLASSGS 100 (116)
T ss_dssp --HHHHCT-HHHHHHHHHHHCT-SS
T ss_pred --HHHhhccHHHHHHHHHHHHhCCC
Confidence 55788988888888888776653
No 435
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.47 E-value=1.4e+02 Score=20.03 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
+|+-..++...++|+++++.|.+.|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 57778899999999999999999985
No 436
>PRK05907 hypothetical protein; Provisional
Probab=35.43 E-value=2.3e+02 Score=22.66 Aligned_cols=98 Identities=11% Similarity=0.040 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCH-HHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 045820 56 RIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV-GRV-EEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133 (225)
Q Consensus 56 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 133 (225)
...+-+++.+.|...+......++..+.. +++..+.+=+++++.. |+- .--.+..+.+......-|++ .++++.
T Consensus 140 ~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~-~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF---~L~dai 215 (311)
T PRK05907 140 AQLLIQRAKELGISCSLGLASLFVSKFPQ-TGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLW---KLRDAL 215 (311)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHccC-CCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHH---HHHHHH
Confidence 33445666777777777776666665521 4555554444444111 100 00111111121111111111 134333
Q ss_pred HhcCCHHHHHHHHHHHHHc-CCCccH
Q 045820 134 CKVGRSNEAMELLNEAIER-GVTQNV 158 (225)
Q Consensus 134 ~~~g~~~~a~~~~~~m~~~-g~~p~~ 158 (225)
-.|+..+|.++++++... |..|-.
T Consensus 216 -~~~~~~~Al~il~~Ll~~~ge~p~~ 240 (311)
T PRK05907 216 -LRRDRVEGHSLLRSLLSDMGEDPLG 240 (311)
T ss_pred -HccCHHHHHHHHHHHHHhcCCChHH
Confidence 346678888888888877 776643
No 437
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=35.34 E-value=21 Score=20.33 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
|-..+.+.+|++|..+...|....||-.+.=|..
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 3456788999999999899988888877766643
No 438
>PRK05629 hypothetical protein; Validated
Probab=35.32 E-value=79 Score=25.18 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=29.5
Q ss_pred chhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCh
Q 045820 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSV 72 (225)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 72 (225)
.....-.+++++..|+..+|+.+++++...|..|-.
T Consensus 193 ~~~~iF~l~dAv~~g~~~~Al~~l~~l~~~g~~pi~ 228 (318)
T PRK05629 193 AEVSGFDIADLACAGQVSKAVASTRRALQLGVSPVA 228 (318)
T ss_pred ccchHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 344455688888999999999999999999988843
No 439
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.90 E-value=3.3e+02 Score=28.51 Aligned_cols=100 Identities=8% Similarity=0.039 Sum_probs=70.9
Q ss_pred HHhCCHHHHHHHHHH----HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-H------------HhcCCHHHHHHH
Q 045820 48 IKASPLKERIDIFNS----IKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSN-H------------LMVGRVEEAYEM 110 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~----m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~------------~~~g~~~~a~~~ 110 (225)
.+++.+.+|+..+++ .++. .....-|-.+...|+.-+++|.+.-+... . ...|++..|..+
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~C 1471 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWADAAAC 1471 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHH
Confidence 478889999999887 3322 22334455666689998888877665542 1 667999999999
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
|+.+...+ ++...+++-+++.--..|.++.+....+-..
T Consensus 1472 ye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1472 YERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred HHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 99998753 2347788888877777888887776555443
No 440
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=34.87 E-value=2.4e+02 Score=22.69 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=55.4
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHhhcCCCCCHHHHHH-HHHHH
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV--TQNVVTLIQLLQRLEMGHIPRTITFNN-VIQAL 186 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~l~~~~~~~~~p~~~~~~~-li~~~ 186 (225)
+-.+..+.|+..+..+.+.++..+. |+...+..-++++.-... .++......++ .+..+++. =+.-+
T Consensus 149 i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v--------~~~~~~~~f~l~da 218 (334)
T COG1466 149 IKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVV--------SDVAEFNIFDLADA 218 (334)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHH--------hccccCCHHHHHHH
Confidence 3344566788888888888777766 677666666666654322 23332222222 22222222 23345
Q ss_pred HccCcHHHHHHHHHHHHhcCCCC
Q 045820 187 CGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
...|+..+|.++++.+...|..|
T Consensus 219 il~g~~~~a~~~l~~L~~~ge~p 241 (334)
T COG1466 219 LLKGDVKKALRLLRDLLLEGEEP 241 (334)
T ss_pred HHCCCHHHHHHHHHHHHHcCCcH
Confidence 56789999999999999988665
No 441
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=34.83 E-value=1.1e+02 Score=20.79 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHH
Q 045820 54 KERIDIFNSIKKDGTNWSVSD-FNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 54 ~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~~~~~~a~~~~~ 96 (225)
++..++|..|.++|+-..... |-..-..+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456778888988877544433 5555555656677777777664
No 442
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=34.57 E-value=2.7e+02 Score=23.16 Aligned_cols=100 Identities=14% Similarity=0.172 Sum_probs=64.6
Q ss_pred HhCCHHHHHHHHHHHHhc---CC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------------
Q 045820 49 KASPLKERIDIFNSIKKD---GT--NWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------- 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~---g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------- 98 (225)
..+.++++++-|+.-.+- .- -....+|..|-..|.+..|+++|.-+..+.
T Consensus 134 gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 134 GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 345677777777654322 11 223456888888888888888877554333
Q ss_pred ---HhcCCHHHHHHHHHHHh----hCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 99 ---LMVGRVEEAYEMLMNVK----NDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 99 ---~~~g~~~~a~~~~~~m~----~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
...|.+.+|.+..++-. ..|-.| -....-++-+.|...|+.+.|+.-|++
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 44577777777766643 234333 344556778889999999888777765
No 443
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=34.35 E-value=1.1e+02 Score=21.42 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
|...++ -+-+.|-+.+...++++|++.|+..+...|+-++
T Consensus 112 tlGvL~-~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL 151 (157)
T COG2405 112 TLGVLA-LAKSKGLISKDKPILDELIEKGFRISRSILEEIL 151 (157)
T ss_pred hhHHHH-HHHHcCcccchHHHHHHHHHhcCcccHHHHHHHH
Confidence 344444 4445577888889999999999987666666554
No 444
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=34.30 E-value=70 Score=25.71 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred ChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 045820 25 SAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNW 70 (225)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~ 70 (225)
..+.+.++...........+++++-.|+...|+.+++.+...|..|
T Consensus 199 t~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l~~ll~~g~~p 244 (343)
T PRK06585 199 TLDDVRAVVGDASALSLDDAADAALAGDLAAFERALDRALAEGTAP 244 (343)
T ss_pred CHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHHHHHHHcCCCH
No 445
>PRK11906 transcriptional regulator; Provisional
Probab=34.27 E-value=3e+02 Score=23.52 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHH-hcCCCCChhh-HHHHHHHHHhc---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 52 PLKERIDIFNSIK-KDGTNWSVSD-FNDLLMALVML---NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 52 ~~~~a~~~~~~m~-~~g~~~~~~~-~~~li~~~~~~---~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
..+.|+.+|++-. .+.+.|+... |..+-.++... |-. ....+..+|.++-++-.+.+ .-|...-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~----------~~~~~~~~a~~~A~rAveld-~~Da~a~ 341 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKS----------ELELAAQKALELLDYVSDIT-TVDGKIL 341 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCC----------CchHHHHHHHHHHHHHHhcC-CCCHHHH
Confidence 3567777887776 3344555433 33222222111 111 12344566666666665543 2366666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-.+..-.++++.|..+|++....+
T Consensus 342 ~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 342 AIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 666666677888999999999988754
No 446
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.91 E-value=1.3e+02 Score=19.39 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCc
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~ 191 (225)
..+|..|...|+.++|...+.++..... -..+++..+-...+. -......|..++..+++.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~-~~~vv~~~l~~~le~-~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQ-HHEVVKVILECALEE-KKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGG-HHHHHHHHHHHHHTS-SHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHhcCC
Confidence 4567788888999999999988643311 112222222222222 33555666777777765544
No 447
>PHA02940 hypothetical protein; Provisional
Probab=33.80 E-value=2.2e+02 Score=21.99 Aligned_cols=58 Identities=10% Similarity=-0.024 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH-----------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 045820 76 NDLLMALVMLNEQDTAVKFFSNH-----------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133 (225)
Q Consensus 76 ~~li~~~~~~~~~~~a~~~~~~~-----------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 133 (225)
..+.+-|++.+..++-.-+-+++ -...+++.+++-...|.+..-....-||+++..+.
T Consensus 146 ~~la~~yvq~vk~d~r~~~a~~l~keLs~~~d~~enepdle~d~keie~~lE~~~dl~rGtY~vL~~al 214 (315)
T PHA02940 146 ILLAGRYVQDVKKDDRRTIANKLSKELSWTIDYQENEPDLESDFKEIEEELEEKDDLSRGTYKVLKRAL 214 (315)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHhhhhHHHHHHhcCcchhhhHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 34556666666655544333333 33456888888888887776666777888877664
No 448
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.70 E-value=76 Score=26.89 Aligned_cols=50 Identities=24% Similarity=0.420 Sum_probs=38.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..+.+++..++++.+.+.| .+|.. ..-|+.|.|.+++++|...+++=++.
T Consensus 66 G~~~~~e~i~lL~~l~~~g-~ad~l--p~TIDSyTR~n~y~~A~~~l~~s~~~ 115 (480)
T TIGR01503 66 GVALLDEHIELLRTLQEEG-GADFL--PSTIDAYTRQNRYDEAAVGIKESIKA 115 (480)
T ss_pred CCCcHHHHHHHHHHHHHcc-CCCcc--ceeeecccccccHHHHHHHHHhhhhc
Confidence 3467788889999998876 34533 34589999999999999999887663
No 449
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=33.57 E-value=84 Score=19.83 Aligned_cols=46 Identities=15% Similarity=0.446 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhCCC
Q 045820 74 DFNDLLMALVMLNEQDTAVKFFSNHLMV---GRVEEAYEMLMNVKNDGL 119 (225)
Q Consensus 74 ~~~~li~~~~~~~~~~~a~~~~~~~~~~---g~~~~a~~~~~~m~~~g~ 119 (225)
.|..++.++....+.+++..+|+.++.. ..+..=.+++.+|.+.|.
T Consensus 2 ~~~~l~~~i~~l~~~ee~~~f~~dL~T~~E~~~l~~R~~va~~lL~~g~ 50 (87)
T PF01371_consen 2 DWDELFEAILSLKDEEECYDFFEDLCTPDELEALAQRWQVAKELLDEGK 50 (87)
T ss_dssp HHHHHHHHHHCHHCHHCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 3677888888888888888888888333 233333455555555553
No 450
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.55 E-value=82 Score=27.34 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCCChhhHHH-----HHHHHHhc---CC-----HHHHHHHHHHH------HhcCCHHHHHHHHHHHhh
Q 045820 59 IFNSIKKDGTNWSVSDFND-----LLMALVML---NE-----QDTAVKFFSNH------LMVGRVEEAYEMLMNVKN 116 (225)
Q Consensus 59 ~~~~m~~~g~~~~~~~~~~-----li~~~~~~---~~-----~~~a~~~~~~~------~~~g~~~~a~~~~~~m~~ 116 (225)
+++++-..|++|+..||++ +++.|.+. |. .+.-..--+.+ ++...+++-+++|++|.+
T Consensus 255 IleDl~~LgIkpd~~TyTSDyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~k 331 (712)
T KOG1147|consen 255 ILEDLSLLGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKK 331 (712)
T ss_pred HHHHHHHhCcCcceeeechhhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhc
Confidence 5667777899999999875 45444331 11 00000000111 666777777778877764
No 451
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.31 E-value=2.2e+02 Score=23.00 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHhhcCC
Q 045820 143 MELLNEAIERGVTQNVVTLIQLLQRLEMGH 172 (225)
Q Consensus 143 ~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~ 172 (225)
.++|+.|...++.|.-..|.-+.-++...+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF 292 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEF 292 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccC
Confidence 567777777788777666666655554443
No 452
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=33.23 E-value=3e+02 Score=23.35 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHh
Q 045820 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGR---VEEAYEMLMNVK 115 (225)
Q Consensus 58 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~---~~~a~~~~~~m~ 115 (225)
.+|..+++..+.||...+.-+...|.+.--.|-|-++++-.++.|+ +..|+.+|+..+
T Consensus 460 ~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~lgIlklye 520 (586)
T KOG2223|consen 460 KLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTALGILKLYE 520 (586)
T ss_pred HHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHHHHHHHcc
Confidence 4566677788999999999999999998888888888877655554 244444544433
No 453
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=32.92 E-value=4e+02 Score=24.65 Aligned_cols=12 Identities=8% Similarity=-0.097 Sum_probs=5.5
Q ss_pred HHHHHhcCCHHH
Q 045820 130 MDGFCKVGRSNE 141 (225)
Q Consensus 130 l~~~~~~g~~~~ 141 (225)
+...+..|+.+-
T Consensus 626 L~~Aa~~g~~~~ 637 (823)
T PLN03192 626 LCTAAKRNDLTA 637 (823)
T ss_pred HHHHHHhCCHHH
Confidence 444444554443
No 454
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.91 E-value=2.6e+02 Score=22.55 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 108 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
.++++.|+..++.|.-++|.=+.-.+.+.=.+.+..++|+.+......
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r 310 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR 310 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh
Confidence 467888889999999999888888888999999999999998865443
No 455
>COG5210 GTPase-activating protein [General function prediction only]
Probab=32.78 E-value=3.2e+02 Score=23.49 Aligned_cols=41 Identities=12% Similarity=0.234 Sum_probs=37.3
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 58 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
++++.|.+.|+.....++..++..+.+.-.++.+.++++-+
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~l 403 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCL 403 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 57888889999999999999999999999999999998887
No 456
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.41 E-value=1.3e+02 Score=18.87 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=29.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHH----HhcCCCCC--hhhHHH--HHHHHHhcCCHHHHHHHHHHH
Q 045820 43 RFVDKIKASPLKERIDIFNSI----KKDGTNWS--VSDFND--LLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~~~~~m----~~~g~~~~--~~~~~~--li~~~~~~~~~~~a~~~~~~~ 98 (225)
..++.++.+++..|.+-+.+. ...+.... ...+.. +.......|+.++|...+++.
T Consensus 4 ~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 4 RYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 355677999999996654443 44433331 222222 223344446666665555443
No 457
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=32.39 E-value=97 Score=17.36 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=27.5
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 181 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
.+--++.+.|++++|.+..+.+.+ +.|+-.-...|-..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 345678899999999999999987 46877666655443
No 458
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.26 E-value=3.7e+02 Score=24.01 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=60.7
Q ss_pred HHHHHHHHH-HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHhhcCCCCCHHHHHHH
Q 045820 105 EEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER-GVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182 (225)
Q Consensus 105 ~~a~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l~~~~~~~~~p~~~~~~~l 182 (225)
++....+.+ ..+.|+..+......++... .|++..|...+++.... |-. .|+..+.+.+.. ++...+-.+
T Consensus 183 ~ei~~~L~~ia~~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~---It~~~V~~~l~~---~~~~~iF~L 254 (614)
T PRK14971 183 ADIVNHLQYVASKEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGN---ITYKSVIENLNI---LDYDYYFRL 254 (614)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCC---ccHHHHHHHhCC---CCHHHHHHH
Confidence 333334433 34568777776666655444 58899999999887643 222 333333333322 455556566
Q ss_pred HHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 183 IQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
+.+... ++..+|..+++++...|..|.
T Consensus 255 ~dai~~-~~~~~al~ll~~Ll~~g~~~~ 281 (614)
T PRK14971 255 TDALLA-GKVSDSLLLFDEILNKGFDGS 281 (614)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 666655 689999999999998887765
No 459
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=32.01 E-value=4.5e+02 Score=25.47 Aligned_cols=81 Identities=11% Similarity=0.106 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHH---cCCC-ccHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 126 YTAIMDGFCKVG-RSNEAMELLNEAIE---RGVT-QNVVTLIQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 126 ~~~ll~~~~~~g-~~~~a~~~~~~m~~---~g~~-p~~~t~~~l~-~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
-.-++.++.+.| +.+.|.++|+.|.+ .|+. ..+..|..+- +..=.+..--..-|.++++. ..|+.++...++
T Consensus 694 r~~Fi~ga~~~G~~~~~a~~If~~i~~Fa~YgFnKSHa~AYa~iayqtAyLKahyP~eF~aall~~--~~~~~~k~~~~i 771 (1107)
T PRK06920 694 RKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTALLSS--AIGNEDKIVQYI 771 (1107)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhccHHHHHHHHhhc--CcCCcHHHHHHH
Confidence 455788999888 56779999998876 3443 2333444433 11111111224566666664 347788888999
Q ss_pred HHHHhcCCC
Q 045820 200 FLMYEHGKI 208 (225)
Q Consensus 200 ~~m~~~g~~ 208 (225)
.++++.|++
T Consensus 772 ~e~~~~gi~ 780 (1107)
T PRK06920 772 RETKRKGFH 780 (1107)
T ss_pred HHHHHcCCE
Confidence 999998863
No 460
>PRK07914 hypothetical protein; Reviewed
Probab=31.82 E-value=2.7e+02 Score=22.23 Aligned_cols=76 Identities=14% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------------------H
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------------------L 99 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------------------~ 99 (225)
...+....+-+..++.|+..+......|+..+. ++.....+-++++ .
T Consensus 129 ~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g--~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi 206 (320)
T PRK07914 129 KAAERADFVRKEFRSLRVKVDDDTVTALLDAVG--SDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKA 206 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC--ccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
-.|+..+|.++++++...|..|-...+..
T Consensus 207 ~~g~~~~A~~~l~~L~~~ge~p~~il~~l 235 (320)
T PRK07914 207 VAGDVAGAAEALRWAMMRGEPHVVLADAL 235 (320)
T ss_pred HCCCHHHHHHHHHHHHHCCCchHHHHHHH
No 461
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.64 E-value=2.3e+02 Score=21.43 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=24.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
..++++.|.+.+.. -.+.|+.. ..++.++...|+.+.|..+++..
T Consensus 90 D~~~~~~A~~~L~~---ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 90 DHGDFEEALELLSH---PSLIPWFP--DKILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred ChHhHHHHHHHhCC---CCCCcccH--HHHHHHHHHCCChhHHHHHHHhc
Confidence 55667777766522 12222222 23667776666666666666544
No 462
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=31.61 E-value=3.6e+02 Score=23.74 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=63.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHhhcCCCCCH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF-CKVGRSNEAMELLNEAIER-GVTQNVVTLIQLLQRLEMGHIPRT 176 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~l~~~~~~~~~p~~ 176 (225)
.+.|..+.+.++|++-.. |++.++..|...+.-+ ...|+.+.....|+..++. |... ...
T Consensus 90 ~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF-----------------~S~ 151 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDF-----------------LSD 151 (577)
T ss_pred HHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccch-----------------hcc
Confidence 677888999999988775 4666776776655444 3456778888888887753 4331 345
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..|...|.--...+++.....+++...+
T Consensus 152 ~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 152 PLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 6777777777778888888888888775
No 463
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.41 E-value=3.4e+02 Score=23.36 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=60.5
Q ss_pred HHHHHHHHHH-HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHH
Q 045820 104 VEEAYEMLMN-VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNV 182 (225)
Q Consensus 104 ~~~a~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~l 182 (225)
.++...++.. +...|+..+......+... -.|+...|...+++....+- ...|...+-++... .+....-.+
T Consensus 180 ~~el~~~L~~i~k~egi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~~--~~It~~~V~~~lg~---~~~~~vf~L 252 (486)
T PRK14953 180 KEQIKEYLKRICNEEKIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYGE--GKVTIKVVEEFLGI---VSQESVRKF 252 (486)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHhCC---CCHHHHHHH
Confidence 3444444444 3456777777777665543 34889999999988765541 22333333332211 233334455
Q ss_pred HHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 183 IQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
+.+. ..|+.++|..+++++...|..|..
T Consensus 253 i~ai-~~~d~~~al~~l~~L~~~g~~~~~ 280 (486)
T PRK14953 253 LNLL-LESDVDEAIKFLRTLEEKGYNLNK 280 (486)
T ss_pred HHHH-HCCCHHHHHHHHHHHHHcCCCHHH
Confidence 5554 458899999999999988877654
No 464
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=31.33 E-value=1.7e+02 Score=25.28 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 173 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
.||+..|+++..+|+--|-++.. .++.+-....+.|-.
T Consensus 313 aPnVLIWSAV~aScs~pgif~~~-~Ll~Kd~t~ei~p~~ 350 (543)
T KOG2214|consen 313 APNVLIWSAVCASCSVPGIFEST-PLLAKDLTNEIEPFI 350 (543)
T ss_pred CCceehhHHHHHhcccccccCcc-HHHHhhccCcEeecc
Confidence 49999999999999988876644 444444444455543
No 465
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.01 E-value=3.1e+02 Score=22.82 Aligned_cols=109 Identities=11% Similarity=0.081 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHh---cCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 54 KERIDIFNSIKK---DGT-NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVG---RVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 54 ~~a~~~~~~m~~---~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
++...+++.... .|+ ..+......++..+ .|+...+..+++.....+ ..+....++....... ..+...+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~-d~~~~~~ 230 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARY-DKDGDEH 230 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhcc-CCCccHH
Confidence 444455544322 133 44555555444433 577777777776653322 2333333333322111 1121233
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 127 TAIMDGFCK---VGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 127 ~~ll~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
--+++++.+ .++.+.|...+..|.+.|..|....-..++
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444556655 478999999999999999888755444443
No 466
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=30.63 E-value=1.2e+02 Score=24.14 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 88 QDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 88 ~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
++.+..++..|.+...++.-+++++..++. .|+..+-+.+|-++ -...++..+.++.+.+.|+
T Consensus 174 lEt~~~l~~~vrr~~t~e~~Le~l~~ak~~--~pgi~~~TgiIVGl--GETeee~~etl~~Lrelg~ 236 (302)
T TIGR00510 174 LETVERLTPFVRPGATYRWSLKLLERAKEY--LPNLPTKSGIMVGL--GETNEEIKQTLKDLRDHGV 236 (302)
T ss_pred ccchHHHHHHhCCCCCHHHHHHHHHHHHHh--CCCCeecceEEEEC--CCCHHHHHHHHHHHHhcCC
Confidence 455667788887778888888888888774 36677777777777 4456777777777777764
No 467
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=30.48 E-value=74 Score=18.66 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=18.1
Q ss_pred hcCCHHHHHHHHHHHhhCC-CCCCH
Q 045820 100 MVGRVEEAYEMLMNVKNDG-LKPDV 123 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g-~~p~~ 123 (225)
..-+++.|...|.+++..| ++|+.
T Consensus 37 ~~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 37 NNWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred cCCCHHHHHHHHHHHHhcCCCChhh
Confidence 4678899999999998765 54444
No 468
>PRK09857 putative transposase; Provisional
Probab=30.40 E-value=2.8e+02 Score=22.00 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
+..++.--.+.++.++..++++...+. .. +......++..-+.+.|.-+++.++-++|...
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~------------------~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~ 269 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SP------------------KHKESLMTIAERLRQEGEQSKALHIAKIMLES 269 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-Cc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344554445566666666666665543 21 22233334445555555556788888889888
Q ss_pred CCCCCH
Q 045820 206 GKIPSR 211 (225)
Q Consensus 206 g~~p~~ 211 (225)
|+.++.
T Consensus 270 g~~~~~ 275 (292)
T PRK09857 270 GVPLAD 275 (292)
T ss_pred CCCHHH
Confidence 887653
No 469
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=30.39 E-value=2.8e+02 Score=22.12 Aligned_cols=101 Identities=18% Similarity=0.159 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhCCCCCCHHhHH
Q 045820 53 LKERIDIFNSIKKDGT----NWSVSDFNDLLMALVMLNEQDTAVKFFSNH-LMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127 (225)
Q Consensus 53 ~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 127 (225)
.+.|..+|+...+.+. .+....-.++.-+|-..+..-...++.... ....++.++.+.+.+.....++| .....
T Consensus 143 ~e~A~~iyk~~~~~~~~rgrs~~~i~AAclYiACR~~~~prtl~eI~~~~~v~~k~i~~~~~~l~k~L~~~~~~-~~p~~ 221 (310)
T PRK00423 143 REEAAVIYRKAVEKGLIRGRSIEGVVAAALYAACRRCKVPRTLDEIAEVSRVSRKEIGRCYRFLLRELNLKLPP-TDPID 221 (310)
T ss_pred HHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCC-CCHHH
Confidence 6778889998876543 333334444445554444443333333221 22223333333333333222322 23445
Q ss_pred HHHHHHHhcCC----HHHHHHHHHHHHHcCC
Q 045820 128 AIMDGFCKVGR----SNEAMELLNEAIERGV 154 (225)
Q Consensus 128 ~ll~~~~~~g~----~~~a~~~~~~m~~~g~ 154 (225)
.+-..+.+.+- .+.|..+++.+.+.++
T Consensus 222 ~i~r~~~~L~L~~~v~~~A~~i~~~a~~~~l 252 (310)
T PRK00423 222 YVPRFASELGLSGEVQKKAIEILQKAKEKGL 252 (310)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc
Confidence 55555555553 3557888888876543
No 470
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.37 E-value=4.6e+02 Score=24.52 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
|..++.-+.+.+.+++|++++..
T Consensus 533 ~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 533 YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888888888887754
No 471
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=30.23 E-value=2.8e+02 Score=22.02 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=61.8
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN-VVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~ 188 (225)
+-+++.+.|+..+..+...++.... ++...+..-++++.-....++ ..|...+-.... . .+...|. ++.+...
T Consensus 139 i~~~~~~~g~~i~~~a~~~L~~~~g--~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~-~--~~~~if~-l~dai~~ 212 (326)
T PRK07452 139 VERTAQELGVKLTPEAAELLAEAVG--NDSRRLYNELEKLALYAENSTKPISAEEVKALVS-N--TTQNSLQ-LADALLQ 212 (326)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC--ccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhc-c--CcCcHHH-HHHHHHC
Confidence 4455667888888888888887765 467767777777665411111 233333333332 2 2345666 6666665
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 189 VGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 189 ~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
|+..+|.++++.+...|..|-..
T Consensus 213 -~~~~~A~~~l~~L~~~g~~p~~i 235 (326)
T PRK07452 213 -GNTGKALALLDDLLDANEPALRI 235 (326)
T ss_pred -CCHHHHHHHHHHHHHCCCcHHHH
Confidence 88899999999999988766443
No 472
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=30.21 E-value=47 Score=27.96 Aligned_cols=60 Identities=28% Similarity=0.445 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHH------hcCCHHHHHHHHHHHhhCCCCCCHHh----HHHHHHHHHhcC-CHHHHHHH
Q 045820 86 NEQDTAVKFFSNHL------MVGRVEEAYEMLMNVKNDGLKPDVYT----YTAIMDGFCKVG-RSNEAMEL 145 (225)
Q Consensus 86 ~~~~~a~~~~~~~~------~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~g-~~~~a~~~ 145 (225)
.++++|+++-++.. .-|-...|-+++.++.++|+.||+.| ..-.+++|+=.| .++++.++
T Consensus 217 ~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~l 287 (561)
T COG2987 217 ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADEL 287 (561)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHHH
Confidence 56788888877763 34556778899999999999998765 455677787777 34555444
No 473
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=30.12 E-value=3.7e+02 Score=23.35 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 159 (225)
..-.++++..+ |+.++|+.+++++...|..|...
T Consensus 260 ~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 260 VIIEFVEYIIH-RETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 33445555554 88999999999999999987754
No 474
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.04 E-value=2.4e+02 Score=21.28 Aligned_cols=44 Identities=11% Similarity=0.223 Sum_probs=31.1
Q ss_pred CCCCChhhcchhhcCcchhhh--HHHHHH-HHhCCHHHHHHHHHHHH
Q 045820 21 SRSPSAAESLDLKENPRSLQA--QRFVDK-IKASPLKERIDIFNSIK 64 (225)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~--~~l~~~-~~~~~~~~a~~~~~~m~ 64 (225)
...+++++|++.+.++..... ..++.. ++.++.+.|+.+++...
T Consensus 89 LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 89 LDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred hChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcC
Confidence 345889999999988854332 234544 47899999999987754
No 475
>PRK12928 lipoyl synthase; Provisional
Probab=29.25 E-value=1.1e+02 Score=24.22 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
..++..-.+...+++..++++.+++.| |+..+-..+|-++ .-..++..+.++.+.+.+
T Consensus 175 ~~vl~~m~r~~t~e~~le~l~~ak~~g--------------------p~i~~~s~iIvG~--GET~ed~~etl~~Lrel~ 232 (290)
T PRK12928 175 PRLQKAVRRGADYQRSLDLLARAKELA--------------------PDIPTKSGLMLGL--GETEDEVIETLRDLRAVG 232 (290)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhC--------------------CCceecccEEEeC--CCCHHHHHHHHHHHHhcC
Confidence 444554455556666666666666655 5556666777776 233455556666665543
No 476
>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.17 E-value=1.5e+02 Score=21.08 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=22.8
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHH
Q 045820 59 IFNSIKKDGTNWSVSDFNDLLMALVML-NEQDTAVKFFSNH 98 (225)
Q Consensus 59 ~~~~m~~~g~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~ 98 (225)
++....+-+-..-.-||.+++.-+++. .+++++..-+++|
T Consensus 9 i~~~~~k~naELFtLTYGaiV~ql~kDyed~e~Vn~qLdkM 49 (183)
T KOG3330|consen 9 IAKKSKKMNAELFTLTYGAIVTQLCKDYEDPEDVNKQLDKM 49 (183)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHhhcCHHHHHHHHHhc
Confidence 444344334444556777777766654 4466666666666
No 477
>PRK10292 hypothetical protein; Provisional
Probab=28.89 E-value=1.3e+02 Score=17.72 Aligned_cols=58 Identities=7% Similarity=0.110 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
+..+...+|++|++. .-++.-.|.+.|.+|+.....-+|..-...+..+.-......|
T Consensus 3 n~~~~d~lY~EmCRV-----VGdvVl~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qaM 60 (69)
T PRK10292 3 NRTKEDELYREMCRV-----VGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAM 60 (69)
T ss_pred chHHHHHHHHHHHHH-----HHHHHHHHHHcCCCcchhhHHHHHHHHHHhcccccCHHHHHHH
Confidence 345556666666442 2234445788899999988888886655555544443333333
No 478
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=28.77 E-value=69 Score=27.02 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=14.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 045820 136 VGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 136 ~g~~~~a~~~~~~m~~~g~~ 155 (225)
...+++|+.+.++-.+.|..
T Consensus 216 a~~ldeAl~~a~~~~~ag~p 235 (561)
T COG2987 216 AETLDEALALAEEATAAGEP 235 (561)
T ss_pred cCCHHHHHHHHHHHHhcCCc
Confidence 34678888888777777654
No 479
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=28.75 E-value=64 Score=27.05 Aligned_cols=54 Identities=20% Similarity=0.379 Sum_probs=40.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 132 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
-+||.|+......+|+...+.|.. |..|. ...|..|-.+|.-.+++++|.++..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tL--------------SAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTL--------------SAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHH--------------HHHHHHhcchhhhHhhHHHHHhhhh
Confidence 378999999999999999998864 22221 3456777788888888999887754
No 480
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.61 E-value=2.1e+02 Score=23.21 Aligned_cols=57 Identities=14% Similarity=0.024 Sum_probs=0.0
Q ss_pred ChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 25 SAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
..+.+..+........+-.+++++..++...+..+++++...|..| ......++.-+
T Consensus 222 t~~~v~~~~~~~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~-~~il~~l~~~f 278 (367)
T PRK14970 222 TRQAVTENLNILDYDTYINVTDLILENKIPELLLAFNEILRKGFDG-HHFIAGLASHF 278 (367)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHH
No 481
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=28.43 E-value=4.9e+02 Score=24.21 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=27.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 159 (225)
+|......+++++.. ++..+++.+++++...|..+...
T Consensus 244 ~d~~~i~~ll~aL~~-~d~~~~l~~~~~l~~~g~~~~~~ 281 (830)
T PRK07003 244 LDQTYMVRLLDALAA-GDGPEILAVADEMALRSLSFSTA 281 (830)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHH
Confidence 344445666665544 88999999999999999876533
No 482
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.09 E-value=1.1e+02 Score=26.66 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.3
Q ss_pred HHHHccCcHHHHHHHHHHHHh
Q 045820 184 QALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..-++...+|+-.++|++|.+
T Consensus 311 ~Sk~R~~~vEenl~iw~EM~k 331 (712)
T KOG1147|consen 311 ESKCRSNSVEENLRIWEEMKK 331 (712)
T ss_pred cccccCCCHHHHHHHHHHHhc
Confidence 556788899999999999986
No 483
>PRK12928 lipoyl synthase; Provisional
Probab=28.00 E-value=2.7e+02 Score=22.00 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
+.+.+++..|.+...+++.+++++.+++.| |+..+-+.+|-++ ....++..+.++.+.+.++
T Consensus 172 Et~~~vl~~m~r~~t~e~~le~l~~ak~~g--p~i~~~s~iIvG~--GET~ed~~etl~~Lrel~~ 233 (290)
T PRK12928 172 ETVPRLQKAVRRGADYQRSLDLLARAKELA--PDIPTKSGLMLGL--GETEDEVIETLRDLRAVGC 233 (290)
T ss_pred cCcHHHHHHhCCCCCHHHHHHHHHHHHHhC--CCceecccEEEeC--CCCHHHHHHHHHHHHhcCC
Confidence 445788888888889999999999998865 6777777888787 4567888888888888765
No 484
>PRK05629 hypothetical protein; Validated
Probab=27.81 E-value=3.1e+02 Score=21.79 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=15.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHH
Q 045820 136 VGRSNEAMELLNEAIERGVTQNVV 159 (225)
Q Consensus 136 ~g~~~~a~~~~~~m~~~g~~p~~~ 159 (225)
.|+..+|..+++++...|..|-..
T Consensus 206 ~g~~~~Al~~l~~l~~~g~~pi~i 229 (318)
T PRK05629 206 AGQVSKAVASTRRALQLGVSPVAL 229 (318)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHH
Confidence 456677777777777777666443
No 485
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=27.73 E-value=1.1e+02 Score=21.46 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=28.7
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
+|....+.+.+..+.++++.+.+.|+..+..|....++
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~ 43 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLR 43 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 45556667777778888888888888888888776655
No 486
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.53 E-value=2.1e+02 Score=19.76 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=36.8
Q ss_pred HHhhCCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHhhcCC
Q 045820 113 NVKNDGLKPDVYTYTAIMDGFCKV-GRSNEAMELLNEAIERGVTQNVV-TLIQLLQRLEMGH 172 (225)
Q Consensus 113 ~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~~ 172 (225)
.+++.|++++..- -.++..+... +..-.|.++++.+.+.+...+.. +|.+|=.+.+.|+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 3556677665533 3345555554 45678899999998887655544 5666665555554
No 487
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.49 E-value=3.1e+02 Score=21.61 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH--------------HhcCCHHHHHHHHHHHhhC---C--CCCCHHhHHHHHHHHHh
Q 045820 75 FNDLLMALVMLNEQDTAVKFFSNH--------------LMVGRVEEAYEMLMNVKND---G--LKPDVYTYTAIMDGFCK 135 (225)
Q Consensus 75 ~~~li~~~~~~~~~~~a~~~~~~~--------------~~~g~~~~a~~~~~~m~~~---g--~~p~~~~~~~ll~~~~~ 135 (225)
-...|......|++..|.+++.+. .-...+++......++.+. + ..-|...|..++.||.-
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~l 209 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQL 209 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555666777777777776555 1112222222222222221 0 13588889999999999
Q ss_pred cCCHHHHH
Q 045820 136 VGRSNEAM 143 (225)
Q Consensus 136 ~g~~~~a~ 143 (225)
.|+.+.+.
T Consensus 210 Lgk~~~~~ 217 (291)
T PF10475_consen 210 LGKTQSAM 217 (291)
T ss_pred HhhhHHHH
Confidence 99765543
No 488
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=27.16 E-value=1.6e+02 Score=20.86 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=18.0
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 119 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
+...+..--.-|....+.++++.|.++...+.-
T Consensus 86 Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t 118 (157)
T PF07304_consen 86 LSKPVVDKLHQLAQALQARDYDAADEIHVDLMT 118 (157)
T ss_dssp S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333444444445555666777777777766654
No 489
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.04 E-value=2.1e+02 Score=24.15 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=53.9
Q ss_pred HHhCCHHHHHHHHHHHHhcC---C---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC---HHHHHHHHHHH
Q 045820 48 IKASPLKERIDIFNSIKKDG---T---NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMV----GR---VEEAYEMLMNV 114 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~g---~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----g~---~~~a~~~~~~m 114 (225)
...|.+.+|+..|+.+...= + +-......-+|..|. .+-.++.+ ++.+. .. ..+..++-..+
T Consensus 215 ~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icr---EYilgl~i--El~Rr~l~~~~~~~~kR~lELAAYF 289 (422)
T PF06957_consen 215 FTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICR---EYILGLSI--ELERRELPKDPVEDQKRNLELAAYF 289 (422)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHH---HHHHHHHH--HHHHCTS-TTTHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHhccccchhhHHHHHHHHHHH
Confidence 47899999999999887541 0 111112233333331 11111111 11111 22 23445555555
Q ss_pred hhCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 115 KNDGLKPDV--YTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 115 ~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
....+.|.. .+..+-|..+.|.+++..|-.+-+++.+.+-.
T Consensus 290 Thc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 290 THCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp CCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 555666643 35677788888888888888888888876543
No 490
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.58 E-value=4.5e+02 Score=23.23 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCH------------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 045820 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDG-LKPDV------------YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156 (225)
Q Consensus 90 ~a~~~~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~------------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 156 (225)
.+...+-. ...|++..+...++++...+ -..+. .....++++. ..|+..++..+++++.+.|..|
T Consensus 202 eal~~La~-~s~Gdlr~al~~LekL~~y~~~~It~e~V~~ll~~s~~~~vf~Lidal-~~~d~~~al~~l~~L~~~g~~~ 279 (585)
T PRK14950 202 GALEAIAR-AATGSMRDAENLLQQLATTYGGEISLSQVQSLLGISGDEEVKALAEAL-LAKDLKAALRTLNAVAADGADL 279 (585)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 33444433 34577777777777654321 11111 1223455555 4488999999999999999865
Q ss_pred cHHH
Q 045820 157 NVVT 160 (225)
Q Consensus 157 ~~~t 160 (225)
....
T Consensus 280 ~~il 283 (585)
T PRK14950 280 RQFT 283 (585)
T ss_pred HHHH
Confidence 5443
No 491
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.49 E-value=4.7e+02 Score=23.41 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=28.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 159 (225)
++......++++... |+...++.+++++.+.|..|...
T Consensus 249 ~~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~~i 286 (618)
T PRK14951 249 VDRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAAST 286 (618)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 344445556666665 78999999999999999886544
No 492
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=26.48 E-value=96 Score=15.44 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHH
Q 045820 52 PLKERIDIFNSIKKDGTNWSVSDFND 77 (225)
Q Consensus 52 ~~~~a~~~~~~m~~~g~~~~~~~~~~ 77 (225)
.++.|..+|++.... .|++.+|-.
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 467888999888765 577777754
No 493
>PRK05414 urocanate hydratase; Provisional
Probab=26.25 E-value=82 Score=27.07 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 136 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
..++++|+.+.++.++.+.. ...|-.-.|.++|.++.++|+.||..|
T Consensus 216 ~~~Ldeal~~~~~a~~~~~~-------------------------------~SIg~~GNaadv~~~l~~~~i~pDlvt 262 (556)
T PRK05414 216 ADDLDEALALAEEAKAAGEP-------------------------------LSIGLLGNAADVLPELVRRGIRPDLVT 262 (556)
T ss_pred cCCHHHHHHHHHHHHHcCCc-------------------------------eEEEEeccHHHHHHHHHHcCCCCCccC
No 494
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=26.21 E-value=68 Score=21.32 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCCCCHH
Q 045820 196 LLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 196 ~~~~~~m~~~g~~p~~~ 212 (225)
..+.++|.++|++||..
T Consensus 55 ~lv~~EM~~RGY~~~~~ 71 (120)
T TIGR02328 55 LLVMEEMATRGYHVSKQ 71 (120)
T ss_pred HHHHHHHHHcCCCCChh
Confidence 35789999999999874
No 495
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=26.17 E-value=3.9e+02 Score=22.31 Aligned_cols=102 Identities=10% Similarity=0.057 Sum_probs=55.9
Q ss_pred cCCHHHHHHHHHHHhhC----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCccHHHHHHHH------
Q 045820 101 VGRVEEAYEMLMNVKND----G-LKPDVYTYTAIMDGFCKVGRSNEAMELLNEA----IERGVTQNVVTLIQLL------ 165 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~----g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~t~~~l~------ 165 (225)
.+.++++++.|+...+- + .......|-.+-.-|++..|+++|.-...+. ...|+.--..-|..++
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 45566677766665431 1 1224566788888888888888887665443 3344443333444443
Q ss_pred --------------------HHhhcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 166 --------------------QRLEMGHIP-RTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 166 --------------------~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
-.+..|-++ -....-.+-+-|-..|+.|.|+.-|++.
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 011222211 1223344556666788888887666654
No 496
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=26.14 E-value=79 Score=27.02 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
...++++|+...++.++.+.. ...|-.-.|.++|.++.++|+.||..|
T Consensus 206 ~~~~ldeal~~~~~a~~~~~~-------------------------------~SIg~~GNaadv~~~l~~r~i~pDlvt 253 (545)
T TIGR01228 206 QTDSLDEALARAEEAKAEGKP-------------------------------ISIGLLGNAAEVLPELLKRGVVPDVVT 253 (545)
T ss_pred EcCCHHHHHHHHHHHHHcCCc-------------------------------eEEEeeccHHHHHHHHHHcCCCCCCcC
No 497
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=26.03 E-value=1.6e+02 Score=17.95 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 137 (225)
+.+.|..++..+++. -+.++..||++-+-+.|+.
T Consensus 12 DtEmA~~mL~DLr~d-ekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDD-EKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcch-hhcChHHHHHHHHHHHHcc
Confidence 556677777777643 2457788999888887774
No 498
>PF13606 Ank_3: Ankyrin repeat
Probab=25.96 E-value=88 Score=14.84 Aligned_cols=26 Identities=4% Similarity=0.020 Sum_probs=13.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 045820 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWS 71 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~ 71 (225)
.++..+++.|+.+-+ +.+.+.|..+|
T Consensus 4 T~Lh~A~~~g~~e~v----~~Ll~~gadvn 29 (30)
T PF13606_consen 4 TPLHLAASNGNIEIV----KYLLEHGADVN 29 (30)
T ss_pred CHHHHHHHhCCHHHH----HHHHHcCCCCC
Confidence 445556666664443 33444555544
No 499
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.30 E-value=4.1e+02 Score=22.31 Aligned_cols=9 Identities=22% Similarity=0.630 Sum_probs=3.8
Q ss_pred HHHHHHhcC
Q 045820 198 LLFLMYEHG 206 (225)
Q Consensus 198 ~~~~m~~~g 206 (225)
+++.+.+.|
T Consensus 298 iv~~Ll~~g 306 (480)
T PHA03100 298 IFKLLLNNG 306 (480)
T ss_pred HHHHHHhcC
Confidence 344444444
No 500
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.29 E-value=3.6e+02 Score=25.64 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045820 58 DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111 (225)
Q Consensus 58 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~ 111 (225)
.+|+.+++..+.|....+-.=|..+.+.++++.|+.+...|+ .+++++....+
T Consensus 983 ~L~~~L~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia-tt~~~E~s~wm 1035 (1049)
T KOG0307|consen 983 ILFDKLRDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA-TTEFDECSSWM 1035 (1049)
T ss_pred HHHHHHhcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh-hcchhhhhhHH
Confidence 356777777688888888888888889999999999999987 77777766543
Done!