Query 045820
Match_columns 225
No_of_seqs 193 out of 1460
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 09:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.3E-36 7.8E-41 250.8 17.6 176 41-223 29-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 2E-30 6.8E-35 215.2 17.7 156 54-225 7-189 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 5.9E-25 2E-29 189.8 9.6 125 68-223 123-248 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 1.3E-21 4.3E-26 169.3 12.7 138 37-190 126-286 (1134)
5 2xpi_A Anaphase-promoting comp 99.8 3.7E-17 1.3E-21 137.9 21.0 173 49-225 351-564 (597)
6 2xpi_A Anaphase-promoting comp 99.8 7.2E-17 2.5E-21 136.1 21.8 208 14-225 276-530 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.5 6.1E-12 2.1E-16 100.7 20.4 171 49-225 147-353 (388)
8 4eqf_A PEX5-related protein; a 99.4 3.8E-11 1.3E-15 95.2 19.5 194 11-225 66-295 (365)
9 1w3b_A UDP-N-acetylglucosamine 99.4 8.5E-11 2.9E-15 94.0 19.5 209 11-224 136-386 (388)
10 2y4t_A DNAJ homolog subfamily 99.4 9.1E-11 3.1E-15 95.4 19.4 136 14-151 64-239 (450)
11 2y4t_A DNAJ homolog subfamily 99.3 6.1E-11 2.1E-15 96.4 17.3 210 11-225 27-309 (450)
12 3mkr_A Coatomer subunit epsilo 99.3 6.4E-11 2.2E-15 91.7 16.1 190 14-225 38-248 (291)
13 1fch_A Peroxisomal targeting s 99.3 4.4E-10 1.5E-14 88.8 20.2 193 11-224 65-298 (368)
14 1b89_A Protein (clathrin heavy 99.3 1.5E-11 5E-16 99.3 10.3 197 9-223 31-253 (449)
15 3cv0_A Peroxisome targeting si 99.3 5.6E-10 1.9E-14 86.5 18.6 192 11-224 22-253 (327)
16 3mkr_A Coatomer subunit epsilo 99.3 3E-10 1E-14 87.9 15.8 169 11-205 66-264 (291)
17 2vq2_A PILW, putative fimbrial 99.3 5E-09 1.7E-13 76.7 21.8 183 12-216 10-220 (225)
18 3hym_B Cell division cycle pro 99.2 1.1E-09 3.7E-14 85.0 18.6 194 11-225 23-250 (330)
19 2q7f_A YRRB protein; TPR, prot 99.2 1.1E-09 3.7E-14 81.4 17.8 173 12-205 25-222 (243)
20 2ho1_A Type 4 fimbrial biogene 99.2 2.8E-09 9.6E-14 79.8 19.7 178 15-215 42-246 (252)
21 2pl2_A Hypothetical conserved 99.2 4.3E-10 1.5E-14 83.1 14.7 172 11-204 6-213 (217)
22 2ho1_A Type 4 fimbrial biogene 99.2 5.5E-09 1.9E-13 78.2 21.0 158 47-225 47-223 (252)
23 3hym_B Cell division cycle pro 99.2 2E-09 6.7E-14 83.6 19.0 207 11-221 57-314 (330)
24 3cv0_A Peroxisome targeting si 99.2 9E-10 3.1E-14 85.4 15.7 194 11-225 56-300 (327)
25 1fch_A Peroxisomal targeting s 99.2 9.9E-10 3.4E-14 86.8 15.7 194 11-225 99-344 (368)
26 2vq2_A PILW, putative fimbrial 99.2 3E-09 1E-13 77.9 16.5 158 47-224 18-195 (225)
27 3uq3_A Heat shock protein STI1 99.2 1.1E-08 3.9E-13 76.3 19.9 189 12-204 7-235 (258)
28 4eqf_A PEX5-related protein; a 99.2 4.7E-10 1.6E-14 88.9 12.4 191 11-223 100-339 (365)
29 2q7f_A YRRB protein; TPR, prot 99.1 6.1E-09 2.1E-13 77.3 16.2 157 47-225 33-207 (243)
30 2pl2_A Hypothetical conserved 99.1 4.3E-08 1.5E-12 72.2 20.1 155 47-225 15-199 (217)
31 2gw1_A Mitochondrial precursor 99.1 1.7E-08 5.7E-13 83.1 19.2 206 15-224 11-351 (514)
32 3uq3_A Heat shock protein STI1 99.1 1.4E-08 4.8E-13 75.9 17.0 145 10-165 38-214 (258)
33 3vtx_A MAMA; tetratricopeptide 99.1 7.3E-08 2.5E-12 68.7 20.1 142 49-213 17-176 (184)
34 3as5_A MAMA; tetratricopeptide 99.1 3.6E-08 1.2E-12 69.7 18.0 156 13-205 11-173 (186)
35 1b89_A Protein (clathrin heavy 99.0 1.8E-10 6.2E-15 93.0 5.5 159 21-225 14-191 (449)
36 3ieg_A DNAJ homolog subfamily 99.0 7.9E-08 2.7E-12 75.1 20.5 172 13-205 6-217 (359)
37 1ouv_A Conserved hypothetical 99.0 2.4E-07 8.2E-12 70.3 20.6 167 12-205 8-215 (273)
38 2gw1_A Mitochondrial precursor 99.0 1.3E-08 4.6E-13 83.7 14.5 182 20-223 199-424 (514)
39 3ieg_A DNAJ homolog subfamily 99.0 2.4E-07 8.3E-12 72.3 20.7 156 47-225 13-202 (359)
40 1xnf_A Lipoprotein NLPI; TPR, 99.0 2.2E-07 7.6E-12 70.1 19.6 187 16-206 11-245 (275)
41 3nf1_A KLC 1, kinesin light ch 98.9 2.5E-08 8.4E-13 76.6 13.7 193 12-204 29-306 (311)
42 2fo7_A Synthetic consensus TPR 98.9 1.6E-07 5.5E-12 62.5 15.2 122 47-205 11-132 (136)
43 3nf1_A KLC 1, kinesin light ch 98.9 9.6E-08 3.3E-12 73.3 15.1 141 47-204 37-223 (311)
44 3fp2_A TPR repeat-containing p 98.9 1.2E-07 4.1E-12 78.5 16.1 190 13-205 246-491 (537)
45 2ond_A Cleavage stimulation fa 98.8 6.9E-07 2.3E-11 69.3 18.4 160 27-205 81-270 (308)
46 3u4t_A TPR repeat-containing p 98.8 2.3E-07 7.9E-12 70.0 15.2 191 14-225 7-235 (272)
47 1xnf_A Lipoprotein NLPI; TPR, 98.8 2.2E-07 7.5E-12 70.1 14.9 172 49-225 17-229 (275)
48 3as5_A MAMA; tetratricopeptide 98.8 5.5E-07 1.9E-11 63.4 15.8 141 47-225 18-158 (186)
49 3fp2_A TPR repeat-containing p 98.8 7.4E-07 2.5E-11 73.8 18.8 154 10-165 276-469 (537)
50 3edt_B KLC 2, kinesin light ch 98.8 2E-07 6.7E-12 70.3 14.1 156 49-204 55-280 (283)
51 2ond_A Cleavage stimulation fa 98.8 3.1E-06 1E-10 65.6 21.0 150 54-223 81-253 (308)
52 1ouv_A Conserved hypothetical 98.8 6.4E-07 2.2E-11 67.9 16.7 168 12-206 40-252 (273)
53 3edt_B KLC 2, kinesin light ch 98.8 1.4E-07 4.6E-12 71.2 12.7 139 55-204 26-197 (283)
54 3vtx_A MAMA; tetratricopeptide 98.8 2.1E-06 7.1E-11 61.0 17.8 134 71-225 4-155 (184)
55 2h6f_A Protein farnesyltransfe 98.8 2.6E-07 8.9E-12 74.1 14.3 152 49-223 143-321 (382)
56 4gyw_A UDP-N-acetylglucosamine 98.7 9.7E-07 3.3E-11 76.4 18.1 155 12-204 11-173 (723)
57 1xi4_A Clathrin heavy chain; a 98.7 1.4E-06 4.6E-11 79.1 19.3 198 8-223 1103-1326(1630)
58 4abn_A Tetratricopeptide repea 98.7 1.8E-07 6E-12 77.2 12.8 168 11-201 103-317 (474)
59 3u4t_A TPR repeat-containing p 98.7 3.1E-06 1.1E-10 63.7 18.2 151 47-221 13-186 (272)
60 4i17_A Hypothetical protein; T 98.7 4.7E-06 1.6E-10 61.3 18.2 161 49-217 19-219 (228)
61 2fo7_A Synthetic consensus TPR 98.6 4.7E-06 1.6E-10 55.2 15.3 123 13-153 4-133 (136)
62 4abn_A Tetratricopeptide repea 98.6 1.9E-06 6.3E-11 71.1 15.7 154 49-221 114-302 (474)
63 4gyw_A UDP-N-acetylglucosamine 98.6 3.8E-06 1.3E-10 72.7 17.3 137 49-225 21-159 (723)
64 2ooe_A Cleavage stimulation fa 98.5 2.3E-05 7.8E-10 65.3 20.6 135 50-205 292-454 (530)
65 1na0_A Designed protein CTPR3; 98.5 9.2E-06 3.1E-10 53.0 14.4 117 72-225 9-125 (125)
66 2h6f_A Protein farnesyltransfe 98.5 5.2E-06 1.8E-10 66.5 15.4 154 49-225 109-288 (382)
67 3qky_A Outer membrane assembly 98.5 1.3E-05 4.3E-10 60.3 16.8 63 127-205 152-224 (261)
68 3mv2_B Coatomer subunit epsilo 98.5 1.1E-05 3.7E-10 62.5 16.3 126 56-204 85-239 (310)
69 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.7E-05 9.4E-10 56.3 17.7 133 47-206 16-151 (213)
70 2yhc_A BAMD, UPF0169 lipoprote 98.5 2.6E-05 8.9E-10 57.4 17.7 88 101-206 109-214 (225)
71 2vsy_A XCC0866; transferase, g 98.5 5.4E-06 1.8E-10 69.7 15.6 147 23-206 2-158 (568)
72 3ulq_A Response regulator aspa 98.4 8.9E-06 3E-10 64.7 14.8 189 16-204 109-367 (383)
73 4a1s_A PINS, partner of inscut 98.4 1.1E-06 3.7E-11 70.3 9.3 211 15-225 53-357 (411)
74 2ooe_A Cleavage stimulation fa 98.4 3E-05 1E-09 64.5 17.6 162 23-205 292-492 (530)
75 4i17_A Hypothetical protein; T 98.4 3.7E-05 1.3E-09 56.4 16.1 137 70-222 5-164 (228)
76 4a1s_A PINS, partner of inscut 98.4 4.1E-06 1.4E-10 67.0 11.5 30 176-205 343-372 (411)
77 3ro2_A PINS homolog, G-protein 98.4 2.4E-06 8.2E-11 65.8 9.8 179 12-204 45-291 (338)
78 3sf4_A G-protein-signaling mod 98.4 2.1E-06 7.2E-11 68.2 9.7 177 14-204 51-295 (406)
79 2pzi_A Probable serine/threoni 98.4 9.8E-06 3.4E-10 69.8 14.2 153 45-222 399-579 (681)
80 3ro2_A PINS homolog, G-protein 98.4 3.1E-06 1.1E-10 65.1 10.1 181 12-205 85-332 (338)
81 3sf4_A G-protein-signaling mod 98.3 3.6E-06 1.2E-10 66.8 10.6 179 12-204 89-335 (406)
82 3qou_A Protein YBBN; thioredox 98.3 1.7E-05 5.9E-10 60.8 13.9 138 47-203 127-282 (287)
83 3mv2_B Coatomer subunit epsilo 98.3 7.5E-06 2.6E-10 63.3 11.6 136 49-205 112-282 (310)
84 4ga2_A E3 SUMO-protein ligase 98.3 6.9E-06 2.4E-10 56.7 10.3 137 49-225 9-148 (150)
85 3gw4_A Uncharacterized protein 98.3 2E-05 6.9E-10 56.4 13.0 158 21-204 3-175 (203)
86 1qqe_A Vesicular transport pro 98.3 1.8E-05 6E-10 60.8 13.3 156 25-204 32-227 (292)
87 3ulq_A Response regulator aspa 98.3 3.4E-05 1.2E-09 61.3 15.3 140 48-204 114-292 (383)
88 3q15_A PSP28, response regulat 98.3 4.2E-05 1.4E-09 60.8 15.8 187 17-204 108-364 (378)
89 2r5s_A Uncharacterized protein 98.3 1E-05 3.5E-10 57.2 10.9 159 10-204 6-172 (176)
90 3urz_A Uncharacterized protein 98.3 4.7E-05 1.6E-09 55.4 14.5 151 46-219 13-198 (208)
91 4gco_A Protein STI-1; structur 98.3 8.8E-05 3E-09 49.5 14.5 92 99-212 24-115 (126)
92 2lni_A Stress-induced-phosphop 98.3 4.3E-05 1.5E-09 50.5 12.9 119 69-224 13-131 (133)
93 1xi4_A Clathrin heavy chain; a 98.2 5.2E-05 1.8E-09 69.2 16.4 185 18-224 1057-1263(1630)
94 1qqe_A Vesicular transport pro 98.2 4.6E-05 1.6E-09 58.5 14.1 177 13-203 40-267 (292)
95 2vyi_A SGTA protein; chaperone 98.2 0.00011 3.7E-09 48.2 14.3 104 100-224 24-127 (131)
96 4g1t_A Interferon-induced prot 98.2 0.00017 5.7E-09 58.7 17.7 197 10-208 51-366 (472)
97 1a17_A Serine/threonine protei 98.2 0.00012 4.1E-09 50.4 14.2 121 47-204 23-145 (166)
98 2e2e_A Formate-dependent nitri 98.1 5E-05 1.7E-09 53.4 12.0 120 49-205 22-144 (177)
99 3rjv_A Putative SEL1 repeat pr 98.1 0.00025 8.7E-09 51.6 16.0 137 49-209 30-201 (212)
100 2ifu_A Gamma-SNAP; membrane fu 98.1 4.4E-05 1.5E-09 59.0 12.4 140 49-203 48-222 (307)
101 2xm6_A Protein corresponding t 98.1 0.00079 2.7E-08 55.3 20.5 188 23-222 56-302 (490)
102 3gyz_A Chaperone protein IPGC; 98.1 3.8E-05 1.3E-09 53.2 10.6 91 99-212 47-138 (151)
103 3q15_A PSP28, response regulat 98.1 0.0002 6.7E-09 56.8 16.2 144 48-205 112-290 (378)
104 2xm6_A Protein corresponding t 98.1 0.00046 1.6E-08 56.8 18.7 45 51-98 129-177 (490)
105 1p5q_A FKBP52, FK506-binding p 98.1 0.00023 7.9E-09 55.8 15.9 144 24-203 127-292 (336)
106 3u3w_A Transcriptional activat 98.1 0.0002 6.9E-09 54.8 15.2 144 47-204 85-265 (293)
107 2r5s_A Uncharacterized protein 98.1 3.6E-05 1.2E-09 54.3 10.2 124 11-151 41-172 (176)
108 3gyz_A Chaperone protein IPGC; 98.1 0.0001 3.4E-09 51.0 12.0 123 12-153 11-134 (151)
109 2qfc_A PLCR protein; TPR, HTH, 98.1 0.00046 1.6E-08 52.7 17.0 143 47-203 85-264 (293)
110 1elw_A TPR1-domain of HOP; HOP 98.1 0.00052 1.8E-08 43.9 15.0 86 100-205 16-101 (118)
111 3qou_A Protein YBBN; thioredox 98.1 0.0001 3.6E-09 56.4 12.9 121 99-224 128-268 (287)
112 2kck_A TPR repeat; tetratricop 98.1 0.00019 6.7E-09 45.6 12.5 102 71-206 5-107 (112)
113 2pzi_A Probable serine/threoni 98.1 2.7E-05 9.2E-10 67.1 10.6 130 21-153 402-564 (681)
114 2dba_A Smooth muscle cell asso 98.1 0.00078 2.7E-08 45.2 16.1 100 99-221 39-143 (148)
115 4g1t_A Interferon-induced prot 98.1 0.0011 3.6E-08 53.9 19.6 169 49-221 63-291 (472)
116 1hz4_A MALT regulatory protein 98.1 0.00035 1.2E-08 55.0 16.3 143 49-205 26-203 (373)
117 3k9i_A BH0479 protein; putativ 98.0 1.8E-05 6.1E-10 51.9 7.4 105 100-223 2-109 (117)
118 2fbn_A 70 kDa peptidylprolyl i 98.0 0.00026 8.8E-09 50.8 14.2 155 15-205 9-186 (198)
119 1na0_A Designed protein CTPR3; 98.0 0.00055 1.9E-08 44.2 14.8 89 47-153 19-107 (125)
120 1elr_A TPR2A-domain of HOP; HO 98.0 0.00028 9.5E-09 46.2 12.6 102 100-220 16-121 (131)
121 2vsy_A XCC0866; transferase, g 98.0 0.00028 9.6E-09 59.2 15.4 125 11-153 24-158 (568)
122 3rjv_A Putative SEL1 repeat pr 98.0 0.00082 2.8E-08 48.9 15.8 142 55-221 4-172 (212)
123 3q49_B STIP1 homology and U bo 98.0 0.00048 1.7E-08 45.8 13.6 100 70-205 7-106 (137)
124 1hz4_A MALT regulatory protein 98.0 0.00088 3E-08 52.7 16.9 193 12-204 55-321 (373)
125 2vgx_A Chaperone SYCD; alterna 97.9 0.00057 1.9E-08 46.8 13.9 87 99-205 32-118 (148)
126 3qky_A Outer membrane assembly 97.9 0.00043 1.5E-08 51.8 14.2 160 42-222 20-196 (261)
127 3u3w_A Transcriptional activat 97.9 0.00058 2E-08 52.2 15.0 134 78-225 81-250 (293)
128 2qfc_A PLCR protein; TPR, HTH, 97.9 0.0007 2.4E-08 51.7 15.4 139 74-225 77-250 (293)
129 2xcb_A PCRH, regulatory protei 97.9 0.00023 7.9E-09 48.2 11.4 87 99-205 29-115 (142)
130 1hh8_A P67PHOX, NCF-2, neutrop 97.9 0.00079 2.7E-08 48.4 14.9 84 99-205 17-100 (213)
131 3upv_A Heat shock protein STI1 97.9 0.00049 1.7E-08 45.3 12.7 87 99-205 15-101 (126)
132 2ifu_A Gamma-SNAP; membrane fu 97.9 0.0002 6.9E-09 55.2 12.2 91 99-204 87-183 (307)
133 2yhc_A BAMD, UPF0169 lipoprote 97.9 0.00017 5.9E-09 52.9 11.2 140 12-153 6-214 (225)
134 3sz7_A HSC70 cochaperone (SGT) 97.9 0.0011 3.8E-08 45.8 14.8 86 100-205 23-108 (164)
135 2vyi_A SGTA protein; chaperone 97.9 0.00092 3.1E-08 43.5 13.6 89 47-153 22-110 (131)
136 4b4t_Q 26S proteasome regulato 97.8 0.003 1E-07 50.6 18.6 147 45-204 12-203 (434)
137 3n71_A Histone lysine methyltr 97.8 0.00015 5.1E-09 59.9 10.8 131 49-204 321-463 (490)
138 2lni_A Stress-induced-phosphop 97.8 0.0015 5E-08 42.8 13.6 89 47-153 26-114 (133)
139 4ga2_A E3 SUMO-protein ligase 97.8 0.00022 7.4E-09 49.0 9.5 102 100-224 9-112 (150)
140 3urz_A Uncharacterized protein 97.8 0.0008 2.7E-08 48.7 13.1 73 129-221 60-132 (208)
141 2xev_A YBGF; tetratricopeptide 97.8 0.00084 2.9E-08 44.1 12.2 89 99-205 13-105 (129)
142 1a17_A Serine/threonine protei 97.8 0.0012 4E-08 45.3 13.3 120 14-151 17-145 (166)
143 1hxi_A PEX5, peroxisome target 97.8 0.00035 1.2E-08 46.1 9.9 86 99-205 28-114 (121)
144 4gcn_A Protein STI-1; structur 97.8 0.00047 1.6E-08 45.8 10.6 101 99-217 19-122 (127)
145 2xcb_A PCRH, regulatory protei 97.8 0.00075 2.6E-08 45.6 11.8 88 47-152 28-115 (142)
146 4gco_A Protein STI-1; structur 97.7 0.002 6.8E-08 42.7 13.4 89 47-153 23-111 (126)
147 2vgx_A Chaperone SYCD; alterna 97.7 0.0011 3.8E-08 45.3 12.3 88 47-152 31-118 (148)
148 3ro3_A PINS homolog, G-protein 97.7 0.00082 2.8E-08 45.5 11.4 131 48-204 20-157 (164)
149 3gw4_A Uncharacterized protein 97.7 0.00051 1.7E-08 48.9 10.5 130 11-152 27-176 (203)
150 4e6h_A MRNA 3'-END-processing 97.6 0.001 3.5E-08 57.1 13.0 154 49-221 390-584 (679)
151 1p5q_A FKBP52, FK506-binding p 97.6 0.0018 6.3E-08 50.6 13.5 80 123-222 196-275 (336)
152 2fbn_A 70 kDa peptidylprolyl i 97.5 0.0031 1.1E-07 45.0 12.7 78 124-221 89-166 (198)
153 1wao_1 Serine/threonine protei 97.5 0.00085 2.9E-08 55.3 10.4 115 49-200 18-134 (477)
154 3rkv_A Putative peptidylprolyl 97.5 0.011 3.7E-07 40.6 15.7 110 73-212 12-131 (162)
155 3upv_A Heat shock protein STI1 97.5 0.0045 1.5E-07 40.5 12.1 89 47-153 14-102 (126)
156 4f3v_A ESX-1 secretion system 97.5 0.0037 1.3E-07 47.7 12.8 55 99-153 182-238 (282)
157 1elr_A TPR2A-domain of HOP; HO 97.5 0.0029 9.9E-08 41.1 11.0 92 47-153 14-109 (131)
158 2xev_A YBGF; tetratricopeptide 97.4 0.0057 1.9E-07 39.9 12.4 90 45-153 10-106 (129)
159 1na3_A Designed protein CTPR2; 97.4 0.0036 1.2E-07 38.0 10.3 84 122-225 8-91 (91)
160 2e2e_A Formate-dependent nitri 97.4 0.0011 3.6E-08 46.4 8.6 105 100-225 22-129 (177)
161 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0051 1.8E-07 50.3 13.7 120 47-202 278-412 (457)
162 3sz7_A HSC70 cochaperone (SGT) 97.4 0.0072 2.5E-07 41.6 12.7 89 47-153 21-109 (164)
163 4f3v_A ESX-1 secretion system 97.3 0.0064 2.2E-07 46.3 13.0 120 79-217 109-247 (282)
164 3k9i_A BH0479 protein; putativ 97.3 0.00065 2.2E-08 44.2 6.7 86 50-152 3-90 (117)
165 3ro3_A PINS homolog, G-protein 97.3 0.0021 7.1E-08 43.4 9.6 129 12-152 11-158 (164)
166 2c2l_A CHIP, carboxy terminus 97.3 0.0059 2E-07 46.4 12.9 84 100-204 16-100 (281)
167 2kat_A Uncharacterized protein 97.3 0.0054 1.8E-07 39.4 11.0 80 106-205 3-82 (115)
168 4gcn_A Protein STI-1; structur 97.3 0.0043 1.5E-07 41.0 10.5 93 47-152 18-112 (127)
169 1hxi_A PEX5, peroxisome target 97.3 0.0045 1.5E-07 40.6 10.4 90 44-152 24-114 (121)
170 2kck_A TPR repeat; tetratricop 97.3 0.005 1.7E-07 38.7 10.4 83 122-224 5-89 (112)
171 2dba_A Smooth muscle cell asso 97.2 0.018 6.2E-07 38.2 14.4 88 47-153 38-129 (148)
172 1wao_1 Serine/threonine protei 97.2 0.0059 2E-07 50.2 12.7 86 99-205 17-103 (477)
173 3q49_B STIP1 homology and U bo 97.2 0.0093 3.2E-07 39.3 11.7 85 121-225 7-91 (137)
174 4e6h_A MRNA 3'-END-processing 97.2 0.028 9.6E-07 48.3 17.1 150 49-206 355-534 (679)
175 1elw_A TPR1-domain of HOP; HOP 97.2 0.015 5E-07 36.8 14.7 89 47-153 14-102 (118)
176 2l6j_A TPR repeat-containing p 97.2 0.0047 1.6E-07 39.0 9.8 65 122-205 3-67 (111)
177 1wy6_A Hypothetical protein ST 97.2 0.021 7.1E-07 38.3 15.9 135 47-208 17-157 (172)
178 3ma5_A Tetratricopeptide repea 97.2 0.0022 7.4E-08 40.5 7.8 82 122-222 6-88 (100)
179 2hr2_A Hypothetical protein; a 97.1 0.0088 3E-07 41.4 10.2 106 99-219 22-150 (159)
180 3e4b_A ALGK; tetratricopeptide 97.1 0.045 1.5E-06 44.6 16.1 135 12-154 178-353 (452)
181 1klx_A Cysteine rich protein B 97.0 0.031 1.1E-06 37.4 12.6 112 51-207 9-128 (138)
182 3mkq_A Coatomer beta'-subunit; 97.0 0.016 5.4E-07 50.4 13.8 58 47-113 662-719 (814)
183 3dra_A Protein farnesyltransfe 97.0 0.038 1.3E-06 42.7 14.3 151 51-219 124-301 (306)
184 3n71_A Histone lysine methyltr 97.0 0.0028 9.6E-08 52.3 8.3 124 19-152 318-464 (490)
185 1ihg_A Cyclophilin 40; ppiase 97.0 0.029 1E-06 44.5 13.9 79 122-221 272-351 (370)
186 3qwp_A SET and MYND domain-con 97.0 0.011 3.6E-07 48.1 11.5 95 47-151 297-399 (429)
187 4b4t_Q 26S proteasome regulato 97.0 0.017 5.8E-07 46.2 12.7 142 49-204 67-244 (434)
188 1kt0_A FKBP51, 51 kDa FK506-bi 96.9 0.012 4.2E-07 48.0 11.9 78 123-221 317-395 (457)
189 3qww_A SET and MYND domain-con 96.9 0.0055 1.9E-07 49.8 9.6 92 50-151 311-410 (433)
190 1ihg_A Cyclophilin 40; ppiase 96.9 0.019 6.5E-07 45.6 12.2 114 47-197 233-362 (370)
191 2hr2_A Hypothetical protein; a 96.9 0.032 1.1E-06 38.6 11.7 95 47-152 21-131 (159)
192 3mkq_A Coatomer beta'-subunit; 96.7 0.026 9.1E-07 49.0 13.0 139 47-202 609-762 (814)
193 3qwp_A SET and MYND domain-con 96.7 0.0078 2.7E-07 48.9 8.9 99 94-204 293-399 (429)
194 3qww_A SET and MYND domain-con 96.7 0.0084 2.9E-07 48.7 8.7 94 99-204 309-410 (433)
195 2c2l_A CHIP, carboxy terminus 96.7 0.065 2.2E-06 40.5 13.3 87 47-152 14-101 (281)
196 3rkv_A Putative peptidylprolyl 96.5 0.054 1.8E-06 36.9 11.2 90 47-153 21-127 (162)
197 2if4_A ATFKBP42; FKBP-like, al 96.5 0.013 4.4E-07 45.8 8.6 61 125-204 232-292 (338)
198 1zu2_A Mitochondrial import re 96.5 0.0095 3.2E-07 41.2 6.8 102 100-223 14-136 (158)
199 2l6j_A TPR repeat-containing p 96.5 0.014 4.8E-07 36.8 7.2 53 100-153 16-68 (111)
200 3e4b_A ALGK; tetratricopeptide 96.5 0.27 9.3E-06 39.9 16.5 130 71-207 175-353 (452)
201 2kat_A Uncharacterized protein 96.4 0.036 1.2E-06 35.4 9.0 80 55-152 3-82 (115)
202 2if4_A ATFKBP42; FKBP-like, al 96.4 0.011 3.7E-07 46.3 7.4 118 49-204 191-327 (338)
203 1dce_A Protein (RAB geranylger 96.4 0.27 9.1E-06 41.4 16.2 151 49-221 40-236 (567)
204 1zu2_A Mitochondrial import re 96.3 0.034 1.2E-06 38.4 8.8 96 49-153 14-121 (158)
205 3mkq_B Coatomer subunit alpha; 96.1 0.21 7E-06 35.1 12.0 93 44-148 12-114 (177)
206 1na3_A Designed protein CTPR2; 96.0 0.11 3.7E-06 31.1 10.3 65 72-153 9-73 (91)
207 3ly7_A Transcriptional activat 95.9 0.2 6.9E-06 39.6 12.5 75 120-216 274-348 (372)
208 3ma5_A Tetratricopeptide repea 95.8 0.079 2.7E-06 33.0 8.3 65 71-152 6-70 (100)
209 2kc7_A BFR218_protein; tetratr 95.6 0.19 6.5E-06 30.7 10.1 58 130-206 7-65 (99)
210 3dra_A Protein farnesyltransfe 95.4 0.66 2.3E-05 35.7 19.9 99 54-154 50-177 (306)
211 2uy1_A Cleavage stimulation fa 95.1 1.2 4E-05 36.7 16.4 163 49-222 225-447 (493)
212 2ff4_A Probable regulatory pro 95.0 0.63 2.1E-05 37.1 12.8 116 49-165 127-252 (388)
213 2kc7_A BFR218_protein; tetratr 94.8 0.17 5.9E-06 30.9 7.4 53 100-153 12-65 (99)
214 3q7a_A Farnesyltransferase alp 94.8 1.1 3.9E-05 35.1 18.2 147 51-219 68-250 (349)
215 1pc2_A Mitochondria fission pr 94.8 0.61 2.1E-05 31.8 10.8 91 103-213 13-106 (152)
216 3u64_A Protein TP_0956; tetrat 94.4 0.53 1.8E-05 35.9 10.2 95 102-218 177-284 (301)
217 2v5f_A Prolyl 4-hydroxylase su 94.4 0.53 1.8E-05 29.5 9.0 76 122-211 4-79 (104)
218 1wy6_A Hypothetical protein ST 94.0 0.87 3E-05 30.6 9.4 108 44-155 46-157 (172)
219 1klx_A Cysteine rich protein B 94.0 0.81 2.8E-05 30.3 10.6 91 102-221 9-103 (138)
220 2ff4_A Probable regulatory pro 93.7 0.67 2.3E-05 36.9 10.2 72 126-216 174-250 (388)
221 3q7a_A Farnesyltransferase alp 93.6 2 7E-05 33.6 19.0 196 22-220 66-346 (349)
222 1v54_E Cytochrome C oxidase po 92.9 1.1 3.7E-05 28.3 8.4 62 103-165 25-86 (109)
223 4h7y_A Dual specificity protei 92.9 1.3 4.4E-05 30.2 8.9 98 49-158 25-129 (161)
224 3dss_A Geranylgeranyl transfer 92.8 2.7 9.2E-05 32.7 15.2 136 53-211 90-271 (331)
225 1k1a_A B-cell lymphoma 3-encod 92.6 0.9 3.1E-05 32.8 8.9 32 39-70 8-39 (241)
226 3bee_A Putative YFRE protein; 92.6 1.1 3.8E-05 27.5 9.2 66 121-205 4-72 (93)
227 3mkq_B Coatomer subunit alpha; 91.9 2.3 8E-05 29.8 12.2 92 99-201 16-114 (177)
228 2y69_E Cytochrome C oxidase su 90.6 2.6 9E-05 28.1 8.4 62 103-165 68-129 (152)
229 3dss_A Geranylgeranyl transfer 90.6 4.9 0.00017 31.2 17.7 115 38-154 26-176 (331)
230 2uy1_A Cleavage stimulation fa 90.4 3.9 0.00013 33.6 11.3 96 49-151 298-412 (493)
231 1pc2_A Mitochondria fission pr 89.7 3.5 0.00012 28.1 9.5 84 53-152 14-100 (152)
232 2v5f_A Prolyl 4-hydroxylase su 89.1 2.7 9.4E-05 26.1 8.6 71 70-152 3-75 (104)
233 1dce_A Protein (RAB geranylger 88.7 9.7 0.00033 31.9 14.9 97 104-221 89-188 (567)
234 3jxi_A Vanilloid receptor-rela 88.0 2.4 8.3E-05 31.0 7.8 60 38-97 3-71 (260)
235 3ly7_A Transcriptional activat 86.5 6.5 0.00022 31.1 9.5 52 100-153 289-340 (372)
236 1v54_E Cytochrome C oxidase po 86.4 3.5 0.00012 26.0 6.3 47 52-98 25-71 (109)
237 3hra_A Ankyrin repeat family p 86.1 4.9 0.00017 27.8 8.2 17 39-55 38-54 (201)
238 3bee_A Putative YFRE protein; 85.7 4.4 0.00015 24.7 8.1 48 104-153 25-73 (93)
239 1nzn_A CGI-135 protein, fissio 85.0 6.2 0.00021 25.9 9.2 91 100-210 13-106 (126)
240 2y69_E Cytochrome C oxidase su 84.6 6.1 0.00021 26.4 7.2 54 166-220 78-131 (152)
241 3u64_A Protein TP_0956; tetrat 83.9 12 0.00043 28.5 10.2 88 53-155 179-272 (301)
242 2uwj_G Type III export protein 83.8 6.1 0.00021 24.8 7.0 50 99-154 50-99 (115)
243 2p58_C Putative type III secre 83.5 6.3 0.00022 24.8 7.5 50 99-154 51-100 (116)
244 3lvg_A Clathrin heavy chain 1; 83.3 0.021 7.1E-07 46.9 -6.0 140 9-150 53-226 (624)
245 4fhn_B Nucleoporin NUP120; pro 82.4 24 0.00084 32.3 12.8 70 125-203 940-1010(1139)
246 3hra_A Ankyrin repeat family p 82.1 10 0.00035 26.1 8.5 22 40-61 5-26 (201)
247 4b4t_R RPN7, 26S proteasome re 79.9 17 0.00058 29.2 9.9 52 47-98 141-194 (429)
248 3esl_A Checkpoint serine/threo 77.9 14 0.00049 26.3 7.8 58 101-158 92-150 (202)
249 4b4t_P 26S proteasome regulato 77.6 27 0.00091 28.2 14.8 52 99-150 148-204 (445)
250 3eu9_A Huntingtin-interacting 76.6 11 0.00038 26.6 7.3 26 181-210 179-204 (240)
251 1wdy_A 2-5A-dependent ribonucl 75.4 9 0.00031 27.9 6.7 112 38-157 70-213 (285)
252 4g8k_A 2-5A-dependent ribonucl 75.4 7.2 0.00024 29.7 6.3 38 167-211 292-329 (337)
253 3t8k_A Uncharacterized protein 74.7 18 0.00063 25.0 7.9 98 40-158 6-109 (186)
254 4a1g_A Mitotic checkpoint seri 74.7 13 0.00043 25.3 6.5 52 105-156 82-134 (152)
255 4fhn_B Nucleoporin NUP120; pro 73.0 47 0.0016 30.4 11.8 82 126-223 902-983 (1139)
256 4g8k_A 2-5A-dependent ribonucl 72.9 20 0.00068 27.2 8.3 17 40-56 168-184 (337)
257 2wpv_A GET4, UPF0363 protein Y 72.2 31 0.0011 26.5 13.6 96 41-151 17-121 (312)
258 2uwj_G Type III export protein 72.1 16 0.00053 23.0 6.3 74 52-128 21-107 (115)
259 2wvi_A Mitotic checkpoint seri 71.7 16 0.00054 25.2 6.5 54 105-158 77-131 (164)
260 2ion_A PDCD4, programmed cell 71.5 19 0.00066 24.3 6.9 26 125-150 11-36 (152)
261 2p58_C Putative type III secre 71.2 16 0.00056 22.9 7.4 74 52-128 22-108 (116)
262 1nzn_A CGI-135 protein, fissio 70.7 19 0.00066 23.5 7.8 88 50-152 14-103 (126)
263 3b7b_A Euchromatic histone-lys 68.7 25 0.00085 24.8 7.6 15 40-54 44-58 (237)
264 3lpz_A GET4 (YOR164C homolog); 68.5 39 0.0013 26.2 18.0 144 47-204 65-215 (336)
265 2nsz_A Programmed cell death p 68.3 22 0.00075 23.2 8.0 26 125-150 9-34 (129)
266 3ffl_A Anaphase-promoting comp 66.9 15 0.00052 25.3 5.6 111 99-209 31-155 (167)
267 3f6q_A Integrin-linked protein 66.2 27 0.00093 23.5 7.4 20 42-61 7-26 (179)
268 3twr_A Tankyrase-2; ankyrin re 64.9 27 0.00093 23.0 6.9 14 130-143 112-125 (165)
269 4a1g_A Mitotic checkpoint seri 64.8 23 0.00078 24.0 6.1 55 140-211 82-136 (152)
270 3d9h_A CDNA FLJ77766, highly s 63.7 42 0.0014 24.8 8.8 78 15-96 17-113 (285)
271 4aez_C MAD3, mitotic spindle c 63.6 24 0.00083 25.6 6.4 66 90-157 118-184 (223)
272 2rfa_A Transient receptor pote 62.7 31 0.0011 24.2 7.1 25 130-154 158-182 (232)
273 2wvi_A Mitotic checkpoint seri 62.6 29 0.001 23.8 6.4 73 120-212 60-132 (164)
274 2xig_A Ferric uptake regulatio 61.8 31 0.0011 23.1 6.5 45 181-225 31-75 (150)
275 3kea_A K1L; tropism, ANK repea 61.8 35 0.0012 25.2 7.4 55 37-95 28-82 (285)
276 2wpv_A GET4, UPF0363 protein Y 61.4 53 0.0018 25.2 15.6 141 48-204 64-216 (312)
277 3bge_A Predicted ATPase; struc 61.3 41 0.0014 23.9 9.1 47 41-87 11-57 (201)
278 4gns_B Protein CSD3, chitin bi 61.0 85 0.0029 27.4 16.9 52 132-202 346-397 (754)
279 2etb_A Transient receptor pote 61.0 14 0.00049 26.7 5.1 31 41-71 3-33 (256)
280 2r9g_A AAA ATPase, central reg 60.4 43 0.0015 23.9 9.4 46 41-87 18-63 (204)
281 2f8y_A Notch homolog 1, transl 60.3 40 0.0014 23.4 8.5 55 38-96 23-79 (223)
282 2rfa_A Transient receptor pote 60.2 41 0.0014 23.6 8.1 28 182-209 157-184 (232)
283 4h7y_A Dual specificity protei 60.1 38 0.0013 23.1 9.3 55 137-210 74-128 (161)
284 3esl_A Checkpoint serine/threo 59.9 44 0.0015 23.8 10.6 75 120-211 74-150 (202)
285 3mwm_A ZUR, putative metal upt 59.5 9.7 0.00033 25.2 3.5 46 180-225 17-62 (139)
286 3utm_A Tankyrase-1; tankyrase, 59.3 25 0.00085 26.5 6.4 13 144-156 228-240 (351)
287 3kea_A K1L; tropism, ANK repea 58.8 52 0.0018 24.3 8.1 101 40-148 62-183 (285)
288 2o03_A Probable zinc uptake re 58.4 12 0.0004 24.5 3.8 45 181-225 15-59 (131)
289 3t8k_A Uncharacterized protein 58.2 42 0.0014 23.1 7.8 158 21-209 14-184 (186)
290 2fu4_A Ferric uptake regulatio 58.1 21 0.00073 20.8 4.7 46 180-225 20-66 (83)
291 2fe3_A Peroxide operon regulat 57.2 34 0.0012 22.7 6.0 44 182-225 27-70 (145)
292 1zbp_A Hypothetical protein VP 57.1 44 0.0015 25.1 6.9 71 131-220 5-77 (273)
293 1wdy_A 2-5A-dependent ribonucl 55.3 55 0.0019 23.5 8.8 47 39-89 4-53 (285)
294 1k1a_A B-cell lymphoma 3-encod 54.9 52 0.0018 23.1 9.3 56 38-97 44-101 (241)
295 1bd8_A P19INK4D CDK4/6 inhibit 54.4 30 0.001 22.5 5.4 21 42-62 4-24 (156)
296 2b7e_A PRE-mRNA processing pro 54.2 7.6 0.00026 21.7 1.8 31 193-223 3-34 (59)
297 2pnn_A Transient receptor pote 53.1 28 0.00095 25.4 5.6 29 39-67 12-40 (273)
298 4aez_C MAD3, mitotic spindle c 53.0 40 0.0014 24.4 6.0 55 140-211 131-185 (223)
299 2qcx_A Transcriptional activat 52.3 69 0.0024 23.7 8.7 92 119-222 132-226 (263)
300 2qq8_A TBC1 domain family memb 52.3 15 0.00052 28.4 4.0 45 110-154 215-259 (334)
301 1wgl_A TOLL-interacting protei 51.3 27 0.00094 19.3 3.9 22 100-121 35-56 (59)
302 1oai_A Nuclear RNA export fact 51.1 13 0.00044 20.7 2.5 24 100-123 32-56 (59)
303 4b4t_R RPN7, 26S proteasome re 50.9 93 0.0032 24.8 11.2 90 99-205 142-237 (429)
304 1mzb_A Ferric uptake regulatio 50.5 15 0.00051 24.1 3.3 45 181-225 22-67 (136)
305 3ctd_A Putative ATPase, AAA fa 49.4 70 0.0024 23.0 9.6 46 42-87 40-85 (213)
306 4gns_B Protein CSD3, chitin bi 48.9 41 0.0014 29.4 6.4 49 49-98 349-397 (754)
307 2y1l_E Darpin-8.4; hydrolase-i 48.7 32 0.0011 22.9 4.9 45 15-59 16-66 (169)
308 3pvs_A Replication-associated 48.3 1.1E+02 0.0036 24.7 11.8 116 104-221 167-300 (447)
309 3eiq_C Programmed cell death p 48.3 90 0.0031 24.4 7.8 27 125-151 219-245 (358)
310 2w57_A Ferric uptake regulatio 47.2 18 0.00062 24.2 3.3 45 181-225 21-66 (150)
311 4b4t_P 26S proteasome regulato 47.1 1.1E+02 0.0038 24.6 10.5 77 75-151 140-246 (445)
312 3o48_A Mitochondria fission 1 46.9 60 0.002 21.4 8.0 73 67-152 35-107 (134)
313 3aji_A 26S proteasome non-ATPa 45.6 74 0.0025 22.1 9.6 54 37-95 37-93 (231)
314 3utm_A Tankyrase-1; tankyrase, 45.4 58 0.002 24.4 6.4 99 41-147 25-145 (351)
315 3qil_A Clathrin heavy chain 1; 45.3 22 0.00074 23.1 3.2 71 19-94 15-86 (125)
316 3eyy_A Putative iron uptake re 43.8 16 0.00054 24.4 2.6 34 192-225 33-66 (145)
317 4ets_A Ferric uptake regulatio 43.5 19 0.00066 24.5 3.0 46 180-225 36-83 (162)
318 3jxi_A Vanilloid receptor-rela 43.0 13 0.00046 26.8 2.4 54 39-96 92-161 (260)
319 2xai_A ASB-9, ankyrin repeat a 42.9 91 0.0031 22.4 8.2 21 39-59 35-55 (261)
320 1n11_A Ankyrin; clathrin, BAND 42.5 99 0.0034 24.2 7.6 25 183-211 183-207 (437)
321 2f6m_A Suppressor protein STP2 41.8 47 0.0016 18.8 4.2 50 125-193 4-53 (65)
322 2yru_A Steroid receptor RNA ac 41.8 68 0.0023 20.6 7.3 48 53-100 41-89 (118)
323 3ljn_A Hypothetical protein; a 41.2 1.2E+02 0.0039 23.1 9.9 82 37-122 17-115 (364)
324 3ljn_A Hypothetical protein; a 40.5 66 0.0022 24.5 6.1 79 15-97 22-106 (364)
325 4gpm_A Engineered protein OR26 39.8 84 0.0029 21.1 8.1 18 43-60 7-24 (169)
326 1oy3_D Transcription factor in 39.2 92 0.0032 22.3 6.5 54 38-95 43-98 (282)
327 4b93_B Ankyrin repeat domain-c 37.6 71 0.0024 23.4 5.7 89 59-156 68-178 (269)
328 3txn_A 26S proteasome regulato 37.1 1.6E+02 0.0053 23.4 11.7 104 48-151 30-167 (394)
329 3nr7_A DNA-binding protein H-N 36.8 59 0.002 19.6 4.1 45 79-123 17-77 (86)
330 4f52_E Glomulin; cullin-ring E 36.1 1.2E+02 0.0041 25.6 7.2 82 63-144 18-106 (596)
331 2ijq_A Hypothetical protein; s 35.9 1E+02 0.0035 21.0 8.8 53 99-151 43-103 (161)
332 3aji_A 26S proteasome non-ATPa 34.9 1.1E+02 0.0038 21.1 8.0 54 42-96 8-61 (231)
333 2ve8_A FTSK, DNA translocase F 34.4 41 0.0014 19.6 2.9 44 24-68 10-53 (73)
334 3qye_A TBC1 domain family memb 33.9 1.6E+02 0.0053 22.4 7.7 47 109-155 209-255 (331)
335 2w57_A Ferric uptake regulatio 33.7 1E+02 0.0036 20.4 5.8 60 112-172 6-67 (150)
336 1yyh_A HN1;, notch 1, ankyrin 33.3 57 0.0019 23.4 4.5 56 37-96 54-111 (253)
337 1zbp_A Hypothetical protein VP 32.6 1.6E+02 0.0054 22.1 12.6 106 46-152 6-129 (273)
338 3eyy_A Putative iron uptake re 31.9 1.1E+02 0.0038 20.1 6.2 59 112-172 8-67 (145)
339 3f3f_C Nucleoporin NUP85; stru 31.9 2.2E+02 0.0077 23.9 8.0 89 86-195 480-568 (570)
340 3mwm_A ZUR, putative metal upt 31.2 61 0.0021 21.2 3.9 43 129-171 19-62 (139)
341 3o48_A Mitochondria fission 1 30.9 1.2E+02 0.0039 20.1 9.5 73 120-212 37-112 (134)
342 3d5l_A Regulatory protein RECX 30.5 1.5E+02 0.0051 21.2 11.8 53 103-156 91-143 (221)
343 2yru_A Steroid receptor RNA ac 30.4 1.1E+02 0.0037 19.6 8.8 44 109-152 47-90 (118)
344 2o03_A Probable zinc uptake re 29.9 76 0.0026 20.4 4.2 43 129-171 16-59 (131)
345 2zu6_B Programmed cell death p 29.4 1.9E+02 0.0064 22.0 11.8 26 126-151 169-194 (307)
346 2p22_A Suppressor protein STP2 29.3 98 0.0033 21.4 4.7 49 174-223 109-157 (174)
347 3r88_A Anthranilate phosphorib 28.8 2.1E+02 0.0073 22.5 7.5 67 121-206 21-89 (377)
348 1ug3_A EIF4GI, eukaryotic prot 28.8 2E+02 0.0067 22.1 7.0 22 43-64 17-38 (339)
349 4b4t_S RPN3, 26S proteasome re 28.5 2.5E+02 0.0087 23.3 9.2 44 72-115 231-297 (523)
350 2ion_A PDCD4, programmed cell 28.5 1.3E+02 0.0046 20.1 8.8 68 91-159 12-81 (152)
351 3pvs_A Replication-associated 28.2 2.3E+02 0.008 22.7 8.5 44 44-87 262-305 (447)
352 3hzj_A Rabgap1L, RAB GTPase-ac 28.2 1.9E+02 0.0065 21.7 7.8 47 109-155 175-221 (310)
353 4f52_E Glomulin; cullin-ring E 27.9 1.4E+02 0.0047 25.3 6.3 106 114-221 18-131 (596)
354 3ygs_P Procaspase 9; apoptosis 27.7 1.1E+02 0.0036 18.6 4.9 39 51-93 51-89 (97)
355 2p22_A Suppressor protein STP2 26.9 1.1E+02 0.0037 21.2 4.5 56 121-195 109-164 (174)
356 2d2s_A Exocyst complex compone 26.6 1.9E+02 0.0063 21.0 9.1 88 47-149 28-117 (235)
357 2hpi_A DNA polymerase III alph 26.4 4E+02 0.014 24.9 9.6 81 126-208 781-867 (1220)
358 1ihb_A P18-INK4C(INK6), cyclin 26.3 1.2E+02 0.004 19.6 4.8 19 42-60 7-25 (162)
359 3mv2_A Coatomer subunit alpha; 26.1 2.3E+02 0.0077 21.9 9.4 53 102-154 184-238 (325)
360 2dod_A Transcription elongatio 26.1 1E+02 0.0036 18.3 3.9 36 52-88 15-51 (82)
361 2dzn_A Probable 26S proteasome 26.1 1.6E+02 0.0055 20.2 7.1 20 183-206 144-163 (228)
362 2fe3_A Peroxide operon regulat 25.5 1E+02 0.0035 20.3 4.2 57 114-171 13-70 (145)
363 2rfm_A Putative ankyrin repeat 25.5 1.5E+02 0.0053 19.7 6.7 59 36-96 31-89 (192)
364 1sxj_D Activator 1 41 kDa subu 25.5 2.2E+02 0.0074 21.4 9.4 42 42-84 269-310 (353)
365 3us6_A Histidine-containing ph 25.5 1.5E+02 0.0053 19.7 10.5 95 49-151 19-121 (153)
366 2xig_A Ferric uptake regulatio 25.0 1.5E+02 0.0052 19.5 7.4 60 112-172 16-76 (150)
367 1mzb_A Ferric uptake regulatio 24.8 97 0.0033 20.1 4.0 57 114-171 9-67 (136)
368 3r88_A Anthranilate phosphorib 24.4 2.6E+02 0.0089 22.0 7.0 70 70-154 21-90 (377)
369 1ug3_A EIF4GI, eukaryotic prot 24.4 1.3E+02 0.0046 23.1 5.3 23 76-98 15-37 (339)
370 2ijq_A Hypothetical protein; s 23.9 1.8E+02 0.006 19.8 7.8 64 41-115 36-102 (161)
371 2zgd_A 3 repeat synthetic anky 23.8 1.2E+02 0.0043 18.1 5.0 29 33-61 17-45 (110)
372 1uzc_A Hypothetical protein FL 23.2 1.1E+02 0.0037 17.6 3.5 37 52-88 13-49 (71)
373 2ko4_A Mediator of RNA polymer 22.8 98 0.0033 18.3 3.1 30 67-96 31-60 (81)
374 3aaa_C Myotrophin, protein V-1 22.4 82 0.0028 19.3 3.2 15 40-54 40-54 (123)
375 3m0z_A Putative aldolase; MCSG 22.3 1.6E+02 0.0054 21.5 4.8 85 103-204 146-246 (249)
376 2xai_A ASB-9, ankyrin repeat a 22.1 2.2E+02 0.0074 20.3 7.0 14 41-54 70-83 (261)
377 3ffl_A Anaphase-promoting comp 21.8 2E+02 0.0068 19.7 9.8 100 43-152 26-151 (167)
378 1zl8_A LIN-7; heterodimer, alp 21.5 48 0.0017 17.6 1.5 21 137-157 7-27 (53)
379 3lxu_X Tripeptidyl-peptidase 2 21.5 5.2E+02 0.018 24.5 10.1 107 75-203 1237-1343(1354)
380 3m6y_A 4-hydroxy-2-oxoglutarat 21.4 1.7E+02 0.0057 21.7 4.8 85 103-204 169-269 (275)
381 3vu7_H DNA repair protein REV1 21.4 1.7E+02 0.0059 18.9 5.6 29 122-150 59-87 (124)
382 3ph0_C ASCG; type III secretio 21.3 1.1E+02 0.0039 16.7 3.5 13 53-65 22-34 (61)
383 3eiq_C Programmed cell death p 21.2 3E+02 0.01 21.5 8.4 70 94-164 223-294 (358)
384 2rg8_A Programmed cell death p 21.1 2E+02 0.0069 19.5 5.1 25 126-150 13-37 (165)
385 2p1h_A APAF-1, apoptotic prote 21.0 1.4E+02 0.0049 17.7 6.3 43 174-223 37-79 (94)
386 4ets_A Ferric uptake regulatio 20.9 2E+02 0.0068 19.3 6.4 58 114-172 24-84 (162)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.3e-36 Score=250.84 Aligned_cols=176 Identities=13% Similarity=0.187 Sum_probs=162.8
Q ss_pred hHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045820 41 AQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119 (225)
Q Consensus 41 ~~~l~~~-~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 119 (225)
++.++.. ++.|++++|+++|++|++.|+.||..|||+||.+|++.+..+.+ ...+.+++|.++|++|.+.|+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------~~~~~l~~A~~lf~~M~~~G~ 101 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------SPNPGLSRGFDIFKQMIVDKV 101 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------SCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------hhcchHHHHHHHHHHHHHhCC
Confidence 3444554 48999999999999999999999999999999999988765332 356778999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhcCCCCCHHHHHHH
Q 045820 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNV 182 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~l 182 (225)
.||..|||++|.+|++.|++++|+++|++|.+.|+.||..||+++| +|.+.|+.||..||++|
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 67899999999999999
Q ss_pred HHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 183 IQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
|.+|++.|++++|.+++++|.+.|+.|+..||+.|+..|+.
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999875
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2e-30 Score=215.22 Aligned_cols=156 Identities=18% Similarity=0.208 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 045820 54 KERIDIFNSIKKDGTNWSVS-DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132 (225)
Q Consensus 54 ~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 132 (225)
..+..+.+.+++.+..+++. .++.+|++| ++.|++++|+++|++|.+.|+.||..|||++|.+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c----------------~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~ 70 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMC----------------SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV 70 (501)
T ss_dssp -----------------CHHHHHHHHHHHT----------------TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHH----------------HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Confidence 34556778888888776654 589999999 5555667778888888999999999999999999
Q ss_pred HHhcCC---------HHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhcCCCCCHHHHHHHHHHH
Q 045820 133 FCKVGR---------SNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQAL 186 (225)
Q Consensus 133 ~~~~g~---------~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~li~~~ 186 (225)
|++.+. +++|.++|++|.+.|+.||..||++|| +|.+.|+.||..|||+||.+|
T Consensus 71 c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~ 150 (501)
T 4g26_A 71 CSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGF 150 (501)
T ss_dssp HTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHH
Confidence 998765 688999999999999999999999999 677889999999999999999
Q ss_pred HccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
++.|++++|.++|++|.+.|+.||..||++||++|++.|
T Consensus 151 ~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g 189 (501)
T 4g26_A 151 CRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTK 189 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999987
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=5.9e-25 Score=189.84 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=106.7
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 68 TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 68 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
..--..|||+||++||+.|++++|.++|++| .+|...|+.||+.|||+||++||+.|++++|.++|+
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM-------------~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~ 189 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH-------------HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-------------HHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHH-------------HHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3444568999999997777666555555543 223346899999999999999999999999999999
Q ss_pred HHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCc-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK-IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 148 ~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
+|++.|+. ||+.|||+||.++|+.|+ .++|.++|++|.+.|+.||..||++++.++.|
T Consensus 190 eM~~~G~~------------------PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 190 MVKDAGLT------------------PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHTTCC------------------CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHcCCC------------------CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 99999998 999999999999999998 57899999999999999999999987776655
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=169.33 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=113.4
Q ss_pred chhhhHHHHHH-HHhCCHHHHHHHHHHHH---hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045820 37 RSLQAQRFVDK-IKASPLKERIDIFNSIK---KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112 (225)
Q Consensus 37 ~~~~~~~l~~~-~~~~~~~~a~~~~~~m~---~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~ 112 (225)
...+|+.+++. |+.|++++|..+|+.|. +.|+.||.+|||+||++||+ .|++++|.++|+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck----------------~G~~~eA~~Lf~ 189 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR----------------QGAFKELVYVLF 189 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH----------------HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh----------------CCCHHHHHHHHH
Confidence 34468888885 59999999999998876 45899999999999999955 556677788888
Q ss_pred HHhhCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCccHHHHHHHH------------HHhhcCCCCC----
Q 045820 113 NVKNDGLKPDVYTYTAIMDGFCKVGRS-NEAMELLNEAIERGVTQNVVTLIQLL------------QRLEMGHIPR---- 175 (225)
Q Consensus 113 ~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~l~------------~~~~~~~~p~---- 175 (225)
+|++.|+.||+.|||++|+++|+.|+. ++|.++|++|.+.|+.||..||++++ +....++.|+
T Consensus 190 eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~ 269 (1134)
T 3spa_A 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269 (1134)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCC
T ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCc
Confidence 899999999999999999999999984 78999999999999999999999666 2234455554
Q ss_pred --HHHHHHHHHHHHccC
Q 045820 176 --TITFNNVIQALCGVG 190 (225)
Q Consensus 176 --~~~~~~li~~~~~~g 190 (225)
+.+...|.+-|.+.+
T Consensus 270 ~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 270 PPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCTTTHHHHCCCS
T ss_pred ccccchHHHHHHHccCC
Confidence 556666667777655
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.78 E-value=3.7e-17 Score=137.92 Aligned_cols=173 Identities=13% Similarity=0.038 Sum_probs=88.6
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+.|++++|..+|+++.+. .+.+..+|+.+..+|.+.|++++|.++|+++ .+.|++++|.++
T Consensus 351 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444444444322 1224445555555555555555555555544 445555555555
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhc---
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEM--- 170 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~--- 170 (225)
|+++.+.+ +.+..+|+.+..+|.+.|++++|..+|+++.+... .+..+|+.+. ++.+.
T Consensus 430 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 430 YTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 55555432 22455555555555555556556555555554321 2344444444 11111
Q ss_pred -CCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 171 -GHIPR--TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 171 -~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
+..|+ ..+|..+..+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK 564 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 34455 4566666666666666666666666665543 235566666666655544
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.77 E-value=7.2e-17 Score=136.12 Aligned_cols=208 Identities=11% Similarity=0.045 Sum_probs=173.8
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchh-----hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSL-----QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
..++..|.+.|++++|.+++.++... .+..+.. .++.|++++|..+|+++.+.+ +.+..+|+.++.+|.+.|+
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCC
Confidence 34578899999999999999987552 2233333 348999999999999998775 3488899999999999999
Q ss_pred HHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 88 QDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 88 ~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
+++|..+|+.+ .+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|++|
T Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999887 77899999999999998642 236889999999999999999999999999
Q ss_pred HHcCCCccHHHHHHHH-----------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc----CCC
Q 045820 150 IERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH----GKI 208 (225)
Q Consensus 150 ~~~g~~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~ 208 (225)
.+.+ ..+..+|+.+. ++.+. ...+..+|+.+...|.+.|++++|.++|+++.+. +..
T Consensus 434 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 434 ARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 9764 34667777766 22222 2347889999999999999999999999999876 778
Q ss_pred CC--HHHHHHHHHHhhcCC
Q 045820 209 PS--RTSHDMLIKKLDQQP 225 (225)
Q Consensus 209 p~--~~~~~~ll~~~~~~g 225 (225)
|+ ..+|..+..+|.+.|
T Consensus 512 p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHhc
Confidence 88 789999999998876
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.49 E-value=6.1e-12 Score=100.68 Aligned_cols=171 Identities=16% Similarity=0.074 Sum_probs=99.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
..|++++|...|+++.+.. +-+..+|..+...+.+.|++++|...|+++ ...|++++|...
T Consensus 147 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4577777777777766552 224566777777777777777777777665 344555666666
Q ss_pred HHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhcCC
Q 045820 111 LMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEMGH 172 (225)
Q Consensus 111 ~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~~~ 172 (225)
|.+.... .| +..+++.+...|.+.|++++|...|+++.+..-. +..+|..+. ++.+. .
T Consensus 226 ~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~ 301 (388)
T 1w3b_A 226 YLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-C 301 (388)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-C
T ss_pred HHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C
Confidence 5555442 23 3556666666666667777777666666654311 233333332 11111 2
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 173 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..+..+|+.+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 2455666666666666666666666666665431 233556666666665544
No 8
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.41 E-value=3.8e-11 Score=95.15 Aligned_cols=194 Identities=12% Similarity=-0.032 Sum_probs=148.3
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+...+.+.|++++|+..+.+..... +..+.. ....|++++|+..|++..+.. +.+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 446677788899999999999998743321 222222 338899999999999988763 346888999999999
Q ss_pred hcCCHHHHHHHHHHH----------------------------HhcCCHHHHHHHHHHHhhCCCC-CCHHhHHHHHHHHH
Q 045820 84 MLNEQDTAVKFFSNH----------------------------LMVGRVEEAYEMLMNVKNDGLK-PDVYTYTAIMDGFC 134 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~----------------------------~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~ 134 (225)
+.|++++|...|++. ...|++++|...|+++.+.... ++..+|..+...|.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 999999999999876 2368899999999999875322 26788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHH
Q 045820 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSH 214 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 214 (225)
+.|++++|...|++..+..- .+..+|..+...|...|++++|...|++..+.. +.+..++
T Consensus 225 ~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 284 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRP-------------------EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSR 284 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHH
Confidence 99999999999999987642 356677777788888888888888888777642 2236666
Q ss_pred HHHHHHhhcCC
Q 045820 215 DMLIKKLDQQP 225 (225)
Q Consensus 215 ~~ll~~~~~~g 225 (225)
..+-.+|.+.|
T Consensus 285 ~~l~~~~~~~g 295 (365)
T 4eqf_A 285 YNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
Confidence 66666665543
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.38 E-value=8.5e-11 Score=93.98 Aligned_cols=209 Identities=13% Similarity=-0.008 Sum_probs=155.8
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+-..+...|++++|.+.+.++... .+..+.. ..+.|++++|...|+++.+.. +-+...|..+-..+.
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 34446777788889999999988774332 2223333 337899999999999988764 335677888888899
Q ss_pred hcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 045820 84 MLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMEL 145 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 145 (225)
..|++++|...|++. ...|++++|.+.|+++.+.+ +.+..+|+.+...+.+.|++++|...
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998888765 56799999999999988743 22566888999999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHh-------------hc--CC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 146 LNEAIERGVTQNVVTLIQLLQRL-------------EM--GH-IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 146 ~~~m~~~g~~p~~~t~~~l~~~~-------------~~--~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
|+++.+.. +.+..++..+.... +. .. ..+..+|..+...|.+.|++++|.+.|+++.+. .|
T Consensus 294 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p 370 (388)
T 1w3b_A 294 YNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SP 370 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CT
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC
Confidence 99988763 44666666655111 11 12 235778999999999999999999999999874 44
Q ss_pred -CHHHHHHHHHHhhcC
Q 045820 210 -SRTSHDMLIKKLDQQ 224 (225)
Q Consensus 210 -~~~~~~~ll~~~~~~ 224 (225)
+...|..+-..+.+.
T Consensus 371 ~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 371 TFADAYSNMGNTLKEM 386 (388)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHhHHHHHHHc
Confidence 456666666665544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.37 E-value=9.1e-11 Score=95.36 Aligned_cols=136 Identities=12% Similarity=0.084 Sum_probs=62.1
Q ss_pred hHhhhcCCCCCChhhcchhhcCc-----c-hhhhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHH--
Q 045820 14 VLLVDSPSRSPSAAESLDLKENP-----R-SLQAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSV---SDFNDLLMA-- 81 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~-----~-~~~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~-- 81 (225)
..+..++.+.|++++|+..+.+. . ...+..+.. ..+.|++++|...|+++.+.. +.+. ..|..+...
T Consensus 64 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 64 YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDE 142 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHH
Confidence 34445555555555555555441 1 111111222 224555555555555554432 1122 333333222
Q ss_pred ----------HHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 045820 82 ----------LVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGF 133 (225)
Q Consensus 82 ----------~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 133 (225)
+.+.|+++.|...|+.+ ...|++++|.+.|+++.+.. +.+..+|+.+...|
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 55555555555555444 33455555555555544321 12344555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 045820 134 CKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 134 ~~~g~~~~a~~~~~~m~~ 151 (225)
.+.|++++|...|+++.+
T Consensus 222 ~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.35 E-value=6.1e-11 Score=96.37 Aligned_cols=210 Identities=13% Similarity=0.009 Sum_probs=150.2
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+...+.+.|++++|+..+.++... .+..+.. ....|++++|+..|+++.+.+ +.+..+|..+..+|.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 34457778899999999999999874332 1222222 348899999999999998874 346788999999999
Q ss_pred hcCCHHHHHHHHHHH---------------------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 045820 84 MLNEQDTAVKFFSNH---------------------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~---------------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 130 (225)
+.|++++|...|+.+ ...|++++|...|+++.+.. +.+..++..+.
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 184 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRA 184 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 999999999988765 34689999999999998643 34778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh-------------h--cCCCCC-HHHHHHH------------
Q 045820 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL-------------E--MGHIPR-TITFNNV------------ 182 (225)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~-------------~--~~~~p~-~~~~~~l------------ 182 (225)
.+|.+.|++++|..+|+++.+.. +.+..++..+...+ + ....|+ ...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998753 23455555554111 0 011232 3333333
Q ss_pred HHHHHccCcHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHhhcCC
Q 045820 183 IQALCGVGKIHKALLLLFLMYEHGKIPS-----RTSHDMLIKKLDQQP 225 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g 225 (225)
...|.+.|++++|..+|+++.+. .|+ ...|..+...+.+.|
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCC
Confidence 66777777777777777777653 343 335666666665544
No 12
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.34 E-value=6.4e-11 Score=91.68 Aligned_cols=190 Identities=13% Similarity=0.075 Sum_probs=126.3
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchhhhHH---HHHHH-HhCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCH
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSLQAQR---FVDKI-KASPLKERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---l~~~~-~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~ 88 (225)
..+..+|...|++++|+..++......... +...+ ..++.++|+..++++...+..|+ ...+..+-.++.+.|++
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 466788888899998887776643322222 22222 56788999999998887766564 44455555788888888
Q ss_pred HHHHHHHHHH-------------HhcCCHHHHHHHHHHHhhCCCCCCHHhH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 89 DTAVKFFSNH-------------LMVGRVEEAYEMLMNVKNDGLKPDVYTY---TAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 89 ~~a~~~~~~~-------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
++|.+.++.- .+.|++++|.+.|+++.+. .|+.... .+.+..+...|++++|..+|+++.+.
T Consensus 118 ~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 118 DAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 8888776431 5678888888888888764 3443211 22334444557888888888888876
Q ss_pred CCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 153 g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
. + .+...|+.+..++.+.|++++|...+++..+.. +-+..++..+...+...|
T Consensus 196 ~-p------------------~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 196 C-S------------------PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLG 248 (291)
T ss_dssp S-C------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred C-C------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 2 2 466777777777888888888888888776542 224556666665554443
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.32 E-value=4.4e-10 Score=88.80 Aligned_cols=193 Identities=11% Similarity=-0.043 Sum_probs=139.2
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+...+.+.|++++|+..+.+.... .+..+.. ..+.|++++|...|++..+.. +.+..+|..+...+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44556777888999999999888774322 1222222 338899999999999888764 447788999999999
Q ss_pred hcCCHHHHHHHHHHH---------------------------------HhcCCHHHHHHHHHHHhhCCCC-CCHHhHHHH
Q 045820 84 MLNEQDTAVKFFSNH---------------------------------LMVGRVEEAYEMLMNVKNDGLK-PDVYTYTAI 129 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~---------------------------------~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l 129 (225)
..|+++.|...|+.. ...|++++|...|+++.+.... ++..++..+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 999999999988876 1347788999999998764322 147889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
...|.+.|++++|...+++..+..- .+...|..+...|...|++++|...+++..+.. +.
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 283 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRP-------------------NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 283 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 9999999999999999999887632 245566666666777777777777777666532 22
Q ss_pred CHHHHHHHHHHhhcC
Q 045820 210 SRTSHDMLIKKLDQQ 224 (225)
Q Consensus 210 ~~~~~~~ll~~~~~~ 224 (225)
+...+..+...|.+.
T Consensus 284 ~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 284 YIRSRYNLGISCINL 298 (368)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC
Confidence 445555555555443
No 14
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.29 E-value=1.5e-11 Score=99.33 Aligned_cols=197 Identities=11% Similarity=0.067 Sum_probs=81.5
Q ss_pred CCchhhHhhhcCCCCCChhhcchhhcCcc-hhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 9 PTPFSVLLVDSPSRSPSAAESLDLKENPR-SLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
.+..+..+..++.+.|++++|++.|.+.. ..++..+...+ ..|++++|...++..++. .+++.+.+.++.+|.+.|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhC
Confidence 34577788899999999999998887743 23344444444 678888888877666654 445777888888888888
Q ss_pred CHHHHHHHHHHH------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 87 EQDTAVKFFSNH------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 87 ~~~~a~~~~~~~------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
+++++.++++.- ...|.+++|...|..+ ..|+.+..++.+.|++++|.+.+.++
T Consensus 109 ~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA----- 174 (449)
T 1b89_A 109 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 174 (449)
T ss_dssp CHHHHTTTTTCC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-----
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-----
Confidence 888877765321 5667788888887766 37788888888888888888888777
Q ss_pred CccHHHHHHHHHHh------------hcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 045820 155 TQNVVTLIQLLQRL------------EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 155 ~p~~~t~~~l~~~~------------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 222 (225)
.+..||..++..+ ...+..+......++..|.+.|++++|..+++.....- +-...+|+-|-.+|+
T Consensus 175 -~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 175 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 2556666655221 11122334445578899999999999999999887543 556777877777766
Q ss_pred c
Q 045820 223 Q 223 (225)
Q Consensus 223 ~ 223 (225)
+
T Consensus 253 k 253 (449)
T 1b89_A 253 K 253 (449)
T ss_dssp T
T ss_pred h
Confidence 5
No 15
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.28 E-value=5.6e-10 Score=86.55 Aligned_cols=192 Identities=10% Similarity=-0.073 Sum_probs=139.4
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+...+.+.|++++|+..+.+..... +..+.. ....|++++|...|++..+.. +.+..+|..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 344566678889999999999988743221 222222 338899999999999988763 447788999999999
Q ss_pred hcCCHHHHHHHHHHH---------------------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 045820 84 MLNEQDTAVKFFSNH---------------------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~---------------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 130 (225)
..|+++.|...++.. ...|++++|.+.+++..+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 999999999998776 12356799999999987653 23678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
..|.+.|++++|...+++..+... .+..+|..+...|...|++++|...+++..+.. +.+
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 239 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRP-------------------DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGY 239 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 999999999999999999987642 234556666666666666666666666665532 223
Q ss_pred HHHHHHHHHHhhcC
Q 045820 211 RTSHDMLIKKLDQQ 224 (225)
Q Consensus 211 ~~~~~~ll~~~~~~ 224 (225)
..++..+...|.+.
T Consensus 240 ~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 240 VRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555444
No 16
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.26 E-value=3e-10 Score=87.88 Aligned_cols=169 Identities=12% Similarity=0.088 Sum_probs=136.7
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcc-------hhhhHHHHH--HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPR-------SLQAQRFVD--KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMA 81 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~l~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 81 (225)
.....+...+...++.++|++.++++- ...+...+. ....|++++|+..+++ +.+...+..+...
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 344477788899999999998887642 222222222 3488999999999987 4678889999999
Q ss_pred HHhcCCHHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 045820 82 LVMLNEQDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE 141 (225)
Q Consensus 82 ~~~~~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 141 (225)
+.+.|++++|.+.|+.+ ...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~e 218 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEA 218 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999887 2238999999999999876 34588899999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHH-HHHHHHHHHhc
Q 045820 142 AMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHK-ALLLLFLMYEH 205 (225)
Q Consensus 142 a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 205 (225)
|+..|++..+..- -+..++..++..+...|+.++ +.++++++.+.
T Consensus 219 A~~~l~~al~~~p-------------------~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 219 AEGVLQEALDKDS-------------------GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999887642 367788899999999999875 67899888764
No 17
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.26 E-value=5e-09 Score=76.67 Aligned_cols=183 Identities=10% Similarity=-0.050 Sum_probs=103.1
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.+..+...+.+.|++++|++.+.+..... +..+.. ....|++++|...|++..+.. +.+..+|..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 34456667777788888877776532211 111222 236778888888887776653 3356667777777777
Q ss_pred c-CCHHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 045820 85 L-NEQDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAM 143 (225)
Q Consensus 85 ~-~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 143 (225)
. |++++|...++.. ...|++++|...|.+..+.. +.+...+..+...|.+.|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHH
Confidence 7 7766666666554 33455555555555544321 113444555555555555555555
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHH
Q 045820 144 ELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDM 216 (225)
Q Consensus 144 ~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 216 (225)
..+++..+..-. .+...+..+...+...|+.++|..+++.+.+. .|+...+..
T Consensus 168 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 168 YYFKKYQSRVEV------------------LQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHCS------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHhCCC------------------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 555554443210 24455666666666777777777777776543 244444333
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.25 E-value=1.1e-09 Score=85.03 Aligned_cols=194 Identities=9% Similarity=-0.029 Sum_probs=137.5
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
.....+...+...|++++|++.+.+..... +..+.. ....|++++|..+++++.+.. +-+...|..+-..+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 344455666777788888888777643221 111222 347788888888888877653 336677888888888
Q ss_pred hcC-CHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045820 84 MLN-EQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144 (225)
Q Consensus 84 ~~~-~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 144 (225)
..| +++.|...|+.. ...|++++|...|++..+.. +.+...+..+...|.+.|++++|..
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHH
Confidence 888 788888887776 55678888888888776542 2234556667777888888888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC--------CCCCHHHHHH
Q 045820 145 LLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG--------KIPSRTSHDM 216 (225)
Q Consensus 145 ~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~ 216 (225)
.+++..+..- .+...+..+...|...|++++|...+++..+.. ...+..++..
T Consensus 181 ~~~~al~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 181 FFSQALSIAP-------------------EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHTTCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHhCC-------------------CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 8887776532 457889999999999999999999999998631 1334567778
Q ss_pred HHHHhhcCC
Q 045820 217 LIKKLDQQP 225 (225)
Q Consensus 217 ll~~~~~~g 225 (225)
+...|.+.|
T Consensus 242 la~~~~~~g 250 (330)
T 3hym_B 242 LGHVCRKLK 250 (330)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 877776654
No 19
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.25 E-value=1.1e-09 Score=81.40 Aligned_cols=173 Identities=11% Similarity=0.025 Sum_probs=126.8
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.+..+...+...|++++|+..+.+.... .+..+.. ....|++++|...|++..+.. +.+...|..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 3445667789999999999988874321 1112222 338899999999999988763 3477889999999999
Q ss_pred cCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 85 LNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 85 ~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
.|+++.|...|++. ...|++++|...+++..+.. +.+...+..+...|.+.|++++|...+
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999877 67799999999999987642 236778888999999999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 147 NEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 147 ~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
++..+..- .+..+|..+...|...|++++|.+.+++..+.
T Consensus 183 ~~~~~~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 183 AAVTEQDP-------------------GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHCT-------------------TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhCc-------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99887642 45778999999999999999999999999874
No 20
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.24 E-value=2.8e-09 Score=79.82 Aligned_cols=178 Identities=8% Similarity=-0.075 Sum_probs=90.0
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
.+...+...|++++|++.+.+..... +..+.. ....|++++|...|++..+.. +.+...|..+...+...|+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhH
Confidence 33444555555555555555422111 111111 225566666666665555442 2244455555555555555
Q ss_pred HHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 88 QDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 88 ~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
+++|...|++. ...|++++|...|.+..+.. +.+...+..+...|.+.|++++|...++
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555443 23344444444444443321 1133444444444444445555544444
Q ss_pred HHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHH
Q 045820 148 EAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHD 215 (225)
Q Consensus 148 ~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 215 (225)
+..+.. ..+...+..+...+...|+.++|.++++++.+. .|+...+.
T Consensus 200 ~~~~~~-------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 246 (252)
T 2ho1_A 200 LFAQGG-------------------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQ 246 (252)
T ss_dssp HHHTTS-------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred HHHHhC-------------------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 444322 145566777777788888888888888888764 34444333
No 21
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.23 E-value=4.3e-10 Score=83.10 Aligned_cols=172 Identities=15% Similarity=0.067 Sum_probs=123.5
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh-----h-hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL-----Q-AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+-..+.+.|++++|+..+++.... . +..+-. ..+.|++++|+..|++..+.. +-+...|..+-..+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44556677888999999999888763221 1 112222 348899999999999988764 336678888999999
Q ss_pred hc-----------CCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 045820 84 ML-----------NEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134 (225)
Q Consensus 84 ~~-----------~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 134 (225)
+. |++++|...|++. ...|++++|...|++..+.. .+...+..+-.+|.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 99 9999999988777 66799999999999988765 67788888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 135 KVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..|++++|...|++..+..- -+...+..+...+...|++++|...+++...
T Consensus 163 ~~g~~~~A~~~~~~al~~~P-------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQAP-------------------KDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHHTC----------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-------------------CChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999887542 3567888999999999999999999987653
No 22
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.23 E-value=5.5e-09 Score=78.22 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=131.5
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAY 108 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~ 108 (225)
....|++++|...|++..+.. +.+...|..+...+...|++++|.+.|++. ...|++++|.
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 125 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAY 125 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHH
Confidence 348899999999999988763 446788999999999999999999999877 6789999999
Q ss_pred HHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 045820 109 EMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC 187 (225)
Q Consensus 109 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~ 187 (225)
+.|++..+.+..| +...+..+...|.+.|++++|...+++..+..- .+...+..+...|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------------------~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 126 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-------------------NQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-------------------ccHHHHHHHHHHHH
Confidence 9999998744455 566788899999999999999999999887642 35778899999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 188 GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 188 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..|++++|..++++..+.. +.+...+..+...|.+.|
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 223 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFE 223 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcc
Confidence 9999999999999988743 346667777777766554
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.23 E-value=2e-09 Score=83.55 Aligned_cols=207 Identities=11% Similarity=-0.020 Sum_probs=151.0
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKAS-PLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
.....+...+.+.|++++|...+.+..... +..+.. ....| ++++|...|++..+.. +.+...|..+...+
T Consensus 57 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 135 (330)
T 3hym_B 57 SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSF 135 (330)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344456677888999999998887743321 222222 33778 9999999999988764 33677899999999
Q ss_pred HhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045820 83 VMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAME 144 (225)
Q Consensus 83 ~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 144 (225)
...|++++|...|+.. ...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|..
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 136 AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999877 66899999999999998753 3467889999999999999999999
Q ss_pred HHHHHHHcCC--------CccHHHHHHHH-----------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 145 LLNEAIERGV--------TQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 145 ~~~~m~~~g~--------~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
.+++..+..- ..+..++..+- +..+. ...+...|..+...|.+.|++++|...+
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-CccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999886421 22223333333 11111 1235677888888888888888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHh
Q 045820 200 FLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 200 ~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
++..+.. +-+...+..+..++
T Consensus 294 ~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 294 HTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHccC-CCchHHHHHHHHHH
Confidence 8877532 22556666666655
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.20 E-value=9e-10 Score=85.37 Aligned_cols=194 Identities=10% Similarity=-0.024 Sum_probs=145.7
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHH-----
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDL----- 78 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l----- 78 (225)
..+..+...+.+.|++++|.+.+.+..... +..+.. ....|++++|...++...+.. +.+...+..+
T Consensus 56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 134 (327)
T 3cv0_A 56 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADV 134 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHH
Confidence 445577788899999999999888743321 222222 338899999999999988763 2233333333
Q ss_pred ---------HH-HHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 045820 79 ---------LM-ALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130 (225)
Q Consensus 79 ---------i~-~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 130 (225)
-. .+...|++++|...+++. ...|++++|.+.+++..+.. +.+..+|..+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 213 (327)
T 3cv0_A 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLG 213 (327)
T ss_dssp -----------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 22 367778899999988776 67899999999999987643 33678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC-
Q 045820 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP- 209 (225)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p- 209 (225)
..|.+.|++++|...+++..+..- .+...|..+...|...|++++|.+.+++..+..-..
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 274 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDINP-------------------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT 274 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999887642 357788999999999999999999999998643221
Q ss_pred ----------CHHHHHHHHHHhhcCC
Q 045820 210 ----------SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 210 ----------~~~~~~~ll~~~~~~g 225 (225)
+..+|..+..+|.+.|
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 275 TPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp C-----CCTHHHHHHHHHHHHHHHTT
T ss_pred cccccchhhcCHHHHHHHHHHHHhcC
Confidence 4678888888877665
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.18 E-value=9.9e-10 Score=86.79 Aligned_cols=194 Identities=11% Similarity=0.033 Sum_probs=146.4
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHH------
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFND------ 77 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~------ 77 (225)
..+..+...+.+.|++++|+..+.+..... +..+.. ....|++++|...|+++.+.... +...+..
T Consensus 99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (368)
T 1fch_A 99 EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAG 177 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhh
Confidence 455577888999999999999888743221 222222 33889999999999998876422 2222321
Q ss_pred ---------HHHHHHhcCCHHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 78 ---------LLMALVMLNEQDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 78 ---------li~~~~~~~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
.+..+...|++++|...|+++ ...|++++|...|++..+.. +.+..+|+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 256 (368)
T 1fch_A 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK 256 (368)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 244445888999998888765 66799999999999987642 336788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCC
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 208 (225)
+...|.+.|++++|...|++..+..- .+...|..+...|.+.|++++|...+++..+..-.
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQP-------------------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999987642 45788999999999999999999999998864211
Q ss_pred ---C-------CHHHHHHHHHHhhcCC
Q 045820 209 ---P-------SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 209 ---p-------~~~~~~~ll~~~~~~g 225 (225)
| ...+|..+..+|.+.|
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHT
T ss_pred CCCccccccchhhHHHHHHHHHHHHhC
Confidence 1 2678888888887654
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.17 E-value=3e-09 Score=77.88 Aligned_cols=158 Identities=11% Similarity=-0.013 Sum_probs=130.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------Hhc-CCHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMV-GRVEEA 107 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~-g~~~~a 107 (225)
....|++++|...|+...+.. +.+...|..+...+...|++++|...|+.. ... |++++|
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A 96 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAES 96 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHH
Confidence 448999999999999988763 346788999999999999999999999877 667 999999
Q ss_pred HHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 045820 108 YEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186 (225)
Q Consensus 108 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~ 186 (225)
...|++..+.+..| +...+..+...+.+.|++++|...++++.+... .+...+..+...|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~la~~~ 157 (225)
T 2vq2_A 97 MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-------------------QFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCchHHHHHHHHH
Confidence 99999998743344 367789999999999999999999999987642 3577889999999
Q ss_pred HccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 187 CGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
.+.|++++|..++++..+..-..+...+..+...+.+.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998753224566666665555443
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1.1e-08 Score=76.34 Aligned_cols=189 Identities=11% Similarity=0.053 Sum_probs=127.4
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh-----hHHHHH-HHHhCCHHHHHHHHHHHHhcC--CCCC----hhhHHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ-----AQRFVD-KIKASPLKERIDIFNSIKKDG--TNWS----VSDFNDLL 79 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~l~~-~~~~~~~~~a~~~~~~m~~~g--~~~~----~~~~~~li 79 (225)
.+..+-..+...|++++|+..+.+..... +..+.. ....|++++|...|+...+.. ..++ ..+|..+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 34456677888999999998887743322 112222 338899999999999886642 1122 57899999
Q ss_pred HHHHhcCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 80 MALVMLNEQDTAVKFFSNH----------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~----------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
..+.+.|++++|...|+.. ...|++++|...+++.... .| +...|..+...+.+.|++++|...+++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999887 3457788888888887764 34 456677888888888888888888888
Q ss_pred HHHcCCCccHHHHHHHH-----------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 149 AIERGVTQNVVTLIQLL-----------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 149 m~~~g~~p~~~t~~~l~-----------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..+..-. +..++..+- +..+. ...+...|..+...|.+.|++++|...+++..+
T Consensus 165 a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 165 MIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8765421 222222222 01111 112355666666666666666666666666654
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.15 E-value=4.7e-10 Score=88.86 Aligned_cols=191 Identities=11% Similarity=0.018 Sum_probs=139.6
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCC-----------h
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWS-----------V 72 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~-----------~ 72 (225)
..+..+...+.+.|++++|+..+.+.... .+..+.. ....|++++|...|++..+.. |+ .
T Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~ 177 (365)
T 4eqf_A 100 EAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSP 177 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccch
Confidence 45667888899999999999998874322 1222333 338899999999999987652 22 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 045820 73 SDFNDLLMALVMLNEQDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132 (225)
Q Consensus 73 ~~~~~li~~~~~~~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 132 (225)
..+..+...+.+.|++++|...|++. ...|++++|.+.|++..+.. +.+..+|+.+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGAT 256 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 23344577888899999999988777 56799999999999987642 3367899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC---CCC
Q 045820 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG---KIP 209 (225)
Q Consensus 133 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p 209 (225)
|.+.|++++|...|++..+..- .+..+|..+...|.+.|++++|...|++..+.. ..|
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQP-------------------GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-------------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 9999999999999999987642 357889999999999999999999999997632 111
Q ss_pred --------CHHHHHHHHHHhhc
Q 045820 210 --------SRTSHDMLIKKLDQ 223 (225)
Q Consensus 210 --------~~~~~~~ll~~~~~ 223 (225)
+...|..+-.++..
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp ---------CHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHHHH
Confidence 35677777766654
No 29
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.11 E-value=6.1e-09 Score=77.31 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=123.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAY 108 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~ 108 (225)
....|++++|...|++..+.. +.+...+..+...+.+.|++++|...|+.. ...|++++|.
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp ---------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH
Confidence 347899999999999998753 446888999999999999999999999877 6689999999
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~ 188 (225)
+.|++..+.. +.+...+..+...+.+.|++++|...+++..+..- .+...+..+...|..
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 112 DMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-------------------NDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------------------ccHHHHHHHHHHHHH
Confidence 9999987643 34677888899999999999999999999887642 457788899999999
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 189 VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 189 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.|++++|...+++..+.. +.+..++..+...|.+.|
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcc
Confidence 999999999999998753 345777888887777654
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.10 E-value=4.3e-08 Score=72.22 Aligned_cols=155 Identities=12% Similarity=0.067 Sum_probs=128.1
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------Hhc-------
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMV------- 101 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~------- 101 (225)
..+.|++++|...|++..+.. +-+...|..+-..+.+.|++++|...|++. ...
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 93 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDR 93 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhh
Confidence 448999999999999988763 447788999999999999999999999877 445
Q ss_pred ----CCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCH
Q 045820 102 ----GRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176 (225)
Q Consensus 102 ----g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~ 176 (225)
|++++|...|++..+. .| +...|..+-..|...|++++|...|++..+.. . +.
T Consensus 94 ~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~-------------------~~ 151 (217)
T 2pl2_A 94 ERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D-------------------TP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-------------------CH
T ss_pred cccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c-------------------ch
Confidence 9999999999998764 45 56788889999999999999999999988765 3 55
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..+..+-..|...|++++|...|++..+.. +-+...+..+-..+.+.|
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 778888999999999999999999998753 235667777777776654
No 31
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.08 E-value=1.7e-08 Score=83.12 Aligned_cols=206 Identities=10% Similarity=-0.152 Sum_probs=135.5
Q ss_pred HhhhcCCCCCChhhcchhhcCcchh-----hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSL-----QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 88 (225)
.+-..+.+.|++++|+..+.+.... .+..+.. .++.|++++|...|+...+.+ +-+..+|..+..++.+.|++
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhH
Confidence 4455677788888888888764322 2222223 237888999999888887764 33567788888888888998
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 045820 89 DTAVKFFSNHL--------------------------------------------------------------------- 99 (225)
Q Consensus 89 ~~a~~~~~~~~--------------------------------------------------------------------- 99 (225)
++|...|+.+.
T Consensus 90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 88888776551
Q ss_pred -------------------------------hcCCHHHHHHHHHHHhh-----CCC--------CCCHHhHHHHHHHHHh
Q 045820 100 -------------------------------MVGRVEEAYEMLMNVKN-----DGL--------KPDVYTYTAIMDGFCK 135 (225)
Q Consensus 100 -------------------------------~~g~~~~a~~~~~~m~~-----~g~--------~p~~~~~~~ll~~~~~ 135 (225)
+.|++++|..+|+++.+ ... +.+..++..+...+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 26888999999988876 211 1235678888888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHh----------------hcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 136 VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRL----------------EMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 136 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~----------------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
.|++++|...++++.+.... ..++..+.... -.....+...|..+...|...|++++|...+
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999988876533 44444443111 1111234556666667777777777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 200 FLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 200 ~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
++..+.. +.+...+..+...|.+.
T Consensus 328 ~~~~~~~-~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 328 DKAKELD-PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHTC-SSCSHHHHHHHHHTTTT
T ss_pred HHHHHhC-hhhHHHHHHHHHHHHHc
Confidence 7766542 12344555555555544
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.08 E-value=1.4e-08 Score=75.86 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=100.2
Q ss_pred CchhhHhhhcCCCCCChhhcchhhcCcchhh-------------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhH
Q 045820 10 TPFSVLLVDSPSRSPSAAESLDLKENPRSLQ-------------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDF 75 (225)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 75 (225)
...+..+...+...|++++|++.+.+..... +..+.. ....|++++|...|+...+.. |+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--- 112 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA--- 112 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH---
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh---
Confidence 4556677888999999999999988743321 111222 238899999999999988753 332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 045820 76 NDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG 137 (225)
Q Consensus 76 ~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 137 (225)
..+.+.|++++|...++.. ...|++++|...|++..+.. +.+..+|..+...|.+.|
T Consensus 113 ----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 187 (258)
T 3uq3_A 113 ----DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLM 187 (258)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhC
Confidence 3455556667777666555 56688888888888876543 235677888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 138 RSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 138 ~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
++++|...+++..+..- .+..++..+-
T Consensus 188 ~~~~A~~~~~~al~~~~-~~~~~~~~l~ 214 (258)
T 3uq3_A 188 SFPEAIADCNKAIEKDP-NFVRAYIRKA 214 (258)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCH-HHHHHHHHHH
Confidence 88888888888877542 2344444443
No 33
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.08 E-value=7.3e-08 Score=68.66 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=109.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
+.|++++|+..|++..+.. +-+..+|..+-..|.+.|++++|...+... ...++++.|...
T Consensus 17 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 95 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDA 95 (184)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6677777777777766553 225566777777777777777777776655 556788888888
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g 190 (225)
+.+..... +-+...+..+-..|.+.|++++|...|++..+..- -+...|..+-.+|.+.|
T Consensus 96 ~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-------------------~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 96 LQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-------------------GFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-------------------hhhhHHHHHHHHHHHCC
Confidence 88876532 23677899999999999999999999999987642 46778999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHH
Q 045820 191 KIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 191 ~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
++++|.+.|++..+. .|+...
T Consensus 156 ~~~~A~~~~~~al~~--~p~~a~ 176 (184)
T 3vtx_A 156 LRDEAVKYFKKALEK--EEKKAK 176 (184)
T ss_dssp CHHHHHHHHHHHHHT--THHHHH
T ss_pred CHHHHHHHHHHHHhC--CccCHH
Confidence 999999999998873 455433
No 34
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.07 E-value=3.6e-08 Score=69.67 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=108.5
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
+..+...+...|++++|++.+.+..... +..+.. ....|++++|...++...+.. +.+...|..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 3355566677777777777776643221 111222 236777888887777776552 33556666666666555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 86 ~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
|++ ++|.+.|++..+.. +.+...+..+...+.+.|++++|...+++..+...
T Consensus 90 ~~~----------------~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------- 141 (186)
T 3as5_A 90 QKY----------------DLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP----------- 141 (186)
T ss_dssp TCH----------------HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred cCH----------------HHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-----------
Confidence 555 55555555544432 34677888999999999999999999999887642
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 166 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.+...+..+...|...|++++|...+++..+.
T Consensus 142 --------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 142 --------NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp --------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45688899999999999999999999998753
No 35
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.04 E-value=1.8e-10 Score=93.00 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=40.1
Q ss_pred CCCCChhhcchhhcCcchhh-hHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 21 SRSPSAAESLDLKENPRSLQ-AQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~-~~~l~~~-~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
.+.|++++|.+++++.+... |..+..+ ++.|++++|++.|.+ .+|..+|..++.++...|++++|...++..
T Consensus 14 ~~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 46677888888888865433 3334443 378889999988854 257778888899888888888887755433
Q ss_pred -----------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 045820 99 -----------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161 (225)
Q Consensus 99 -----------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 161 (225)
.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 88 rk~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------ 148 (449)
T 1b89_A 88 RKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------ 148 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------------
T ss_pred HHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------------
Confidence 44566666555543 356667777777777777777777777754
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 162 ~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..|..+..++++.|++++|.+.++++ -++.+|..++.+|++.|
T Consensus 149 ---------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ 191 (449)
T 1b89_A 149 ---------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 191 (449)
T ss_dssp ---------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred ---------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcC
Confidence 24556666666666666666666655 25556666666665543
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.04 E-value=7.9e-08 Score=75.14 Aligned_cols=172 Identities=13% Similarity=-0.031 Sum_probs=129.5
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
+..+...+.+.|++++|+..+.+..... +..+.. ....|++++|...|+...+.. +-+...|..+...+...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence 3455566778889999988887643221 111222 337899999999998887663 33667788888889888
Q ss_pred CCHHHHHHHHHHH---------------------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 045820 86 NEQDTAVKFFSNH---------------------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132 (225)
Q Consensus 86 ~~~~~a~~~~~~~---------------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 132 (225)
|++++|...|+.. ...|++++|.+.|++..+.. +.+...+..+...
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAEC 163 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 9988888887665 24577788888888876642 2366778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 133 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|.+.|++++|...+++..+... .+...|..+...|...|++++|...+++..+.
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKS-------------------DNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCS-------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888888888888876532 46788999999999999999999999999874
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.98 E-value=2.4e-07 Score=70.29 Aligned_cols=167 Identities=11% Similarity=-0.005 Sum_probs=115.2
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhhhH----HHHH-HHH----hCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQAQ----RFVD-KIK----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~l~~-~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
.+..+-..+.+.|++++|++.+.+....+.. .+-. ... .+++++|+..|++..+.+ +...+..+-..|
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 3445556677788888888888764332211 1222 226 788999999998887775 677788888888
Q ss_pred Hh----cCCHHHHHHHHHHH----------------Hh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh---
Q 045820 83 VM----LNEQDTAVKFFSNH----------------LM----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK--- 135 (225)
Q Consensus 83 ~~----~~~~~~a~~~~~~~----------------~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--- 135 (225)
.. .+++++|...|+.. .. .+++++|.+.|++..+.+ +...+..+-..|.+
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~ 161 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRG 161 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred hCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCC
Confidence 88 88888888888766 33 788888888888887755 55667777777777
Q ss_pred -cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHhc
Q 045820 136 -VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG----VGKIHKALLLLFLMYEH 205 (225)
Q Consensus 136 -~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~ 205 (225)
.+++++|...|++..+.+. ...+..+-..|.. .+++++|...+++..+.
T Consensus 162 ~~~~~~~A~~~~~~a~~~~~---------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 162 TPKDLKKALASYDKACDLKD---------------------SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC---------------------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCCC---------------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 8888888888888877642 2334444444444 55555555555555544
No 38
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.3e-08 Score=83.70 Aligned_cols=182 Identities=12% Similarity=0.037 Sum_probs=141.4
Q ss_pred CCCCCChhhcchhhcCcch-----h----------hh--HH---HHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 045820 20 PSRSPSAAESLDLKENPRS-----L----------QA--QR---FVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDL 78 (225)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~-----~----------~~--~~---l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 78 (225)
+.+.|++++|+..+.+... . .. .. +.. ....|++++|...|++..+.... ...|..+
T Consensus 199 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l 276 (514)
T 2gw1_A 199 KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYM 276 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHH
Confidence 3468999999998877554 1 11 11 111 23889999999999999877433 8889999
Q ss_pred HHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHH
Q 045820 79 LMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN 140 (225)
Q Consensus 79 i~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 140 (225)
...+...|+++.|...++.. ...|++++|...|++..+.. +.+...+..+...|.+.|+++
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFD 355 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHH
Confidence 99999999999999998877 66789999999999987753 235678888899999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC-CCCC----HHHHH
Q 045820 141 EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG-KIPS----RTSHD 215 (225)
Q Consensus 141 ~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~~~~ 215 (225)
+|..+++++.+..- .+...|..+...|...|++++|...++++.+.. -.|+ ...+.
T Consensus 356 ~A~~~~~~~~~~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 416 (514)
T 2gw1_A 356 DCETLFSEAKRKFP-------------------EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416 (514)
T ss_dssp HHHHHHHHHHHHST-------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHH
T ss_pred HHHHHHHHHHHHcc-------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 99999999887532 356788999999999999999999999997642 1222 33677
Q ss_pred HHHHHhhc
Q 045820 216 MLIKKLDQ 223 (225)
Q Consensus 216 ~ll~~~~~ 223 (225)
.+...|.+
T Consensus 417 ~l~~~~~~ 424 (514)
T 2gw1_A 417 GKATLLTR 424 (514)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 77777665
No 39
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.96 E-value=2.4e-07 Score=72.30 Aligned_cols=156 Identities=12% Similarity=0.075 Sum_probs=125.9
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAY 108 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~ 108 (225)
.+..|++++|+..|+...+.. +.+..+|..+-..+...|+++.|...|+.. ...|++++|.
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 91 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAE 91 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHH
Confidence 458999999999999998763 346788999999999999999999999887 5679999999
Q ss_pred HHHHHHhhCCCCC----CHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCC
Q 045820 109 EMLMNVKNDGLKP----DVYTYTAI------------MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172 (225)
Q Consensus 109 ~~~~~m~~~g~~p----~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~ 172 (225)
..|++..+. .| +...+..+ ...+...|++++|..+++++.+..-
T Consensus 92 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------------ 151 (359)
T 3ieg_A 92 DDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV------------------ 151 (359)
T ss_dssp HHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------
T ss_pred HHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------------------
Confidence 999998764 34 33444444 4788899999999999999887642
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 173 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.+...+..+...|...|++++|...+++..+.. +.+..++..+...|.+.|
T Consensus 152 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 152 -WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 467788999999999999999999999998753 446677777777765543
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.96 E-value=2.2e-07 Score=70.06 Aligned_cols=187 Identities=16% Similarity=0.005 Sum_probs=134.7
Q ss_pred hhhcCCCCCChhhcchhhcCcchh-------hhHH---HHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 16 LVDSPSRSPSAAESLDLKENPRSL-------QAQR---FVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~---l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
+...+...|++++|+..+.+.... .... +.. ....|++++|...|++..+.. +.+..+|..+...+..
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHH
Confidence 344677789999999888774432 1111 112 238899999999999988763 3368889999999999
Q ss_pred cCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 85 LNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 85 ~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
.|++++|...|+.. ...|++++|...|++..+. .|+...+...+..+.+.|++++|...+
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999877 6789999999999998874 455445555556667779999999999
Q ss_pred HHHHHcCCCccHHHHHHHH------------HHhhcCC--CC-----CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 147 NEAIERGVTQNVVTLIQLL------------QRLEMGH--IP-----RTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 147 ~~m~~~g~~p~~~t~~~l~------------~~~~~~~--~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
.+..... .++...+.... ......+ .| +...|..+...|.+.|++++|...|++..+..
T Consensus 168 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 168 KQHFEKS-DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHS-CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcC-CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8777643 22323333222 1111111 12 15788899999999999999999999998753
No 41
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.94 E-value=2.5e-08 Score=76.62 Aligned_cols=193 Identities=14% Similarity=0.033 Sum_probs=135.6
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchh--------h------hHHHHH-HHHhCCHHHHHHHHHHHHhc------C-CC
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSL--------Q------AQRFVD-KIKASPLKERIDIFNSIKKD------G-TN 69 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~------~~~l~~-~~~~~~~~~a~~~~~~m~~~------g-~~ 69 (225)
.+..+...+...|++++|+..+.+.... . +..+.. ....|++++|...+++..+. + ..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3446778899999999999998875442 1 111112 23789999999999887654 2 23
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------------------HhcCCHHHHHHHHHHHhhC------
Q 045820 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------------LMVGRVEEAYEMLMNVKND------ 117 (225)
Q Consensus 70 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------------~~~g~~~~a~~~~~~m~~~------ 117 (225)
....+|..+...|...|++++|...|++. ...|++++|.+.|++..+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 34667888999999999999999888665 5679999999999998753
Q ss_pred CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCccHHH-HH--HHH----HHh-------------h
Q 045820 118 GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-------VTQNVVT-LI--QLL----QRL-------------E 169 (225)
Q Consensus 118 g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~~t-~~--~l~----~~~-------------~ 169 (225)
+..| ...++..+...|.+.|++++|...+++..+.. ..+.... +. ..+ ... .
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 2234 34578889999999999999999999987631 1111110 00 001 000 0
Q ss_pred c---CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 170 M---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 170 ~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
. ....+..+|..+...|.+.|++++|.+++++..+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 1123456788999999999999999999998875
No 42
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=1.6e-07 Score=62.52 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=95.8
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|..+|+++.+.. +.+...|..+...+...|+++.|...|+ ++.+.+ +.+...+
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~----------------~~~~~~-~~~~~~~ 72 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQ----------------KALELD-PRSAEAW 72 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH----------------HHHHHC-TTCHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHH----------------HHHHHC-CCchHHH
Confidence 448899999999999988764 3366778888888866666655555554 443322 3356788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+...+.+.|++++|...++++.+... .+...+..+...+.+.|++++|.+.++++.+.
T Consensus 73 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 73 YNLGNAYYKQGDYDEAIEYYQKALELDP-------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------------CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8899999999999999999999987642 35678888999999999999999999998764
No 43
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.87 E-value=9.6e-08 Score=73.27 Aligned_cols=141 Identities=14% Similarity=0.047 Sum_probs=108.7
Q ss_pred HHHhCCHHHHHHHHHHHHhc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------------
Q 045820 47 KIKASPLKERIDIFNSIKKD-------GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------- 98 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------- 98 (225)
....|++++|..+|++..+. .......++..+-..|...|++++|...+++.
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 116 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN 116 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34889999999999988763 23445677888999999999999999888665
Q ss_pred -----HhcCCHHHHHHHHHHHhhC------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCccHHH
Q 045820 99 -----LMVGRVEEAYEMLMNVKND------GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIER------GVTQNVVT 160 (225)
Q Consensus 99 -----~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t 160 (225)
...|++++|...|.+..+. +-.| ....+..+...|.+.|++++|..++++..+. +..|
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~---- 192 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP---- 192 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH----
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH----
Confidence 5568888888888887653 2223 3456778888888888888888888887664 1111
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 161 LIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 161 ~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
....++..+...|...|++++|..++++..+
T Consensus 193 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 193 -------------NVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp -------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345788889999999999999999999875
No 44
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.86 E-value=1.2e-07 Score=78.53 Aligned_cols=190 Identities=11% Similarity=-0.017 Sum_probs=138.6
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchhh-----hHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSLQ-----AQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
+..+-..+...|++++|+..+.+..... +..+...+ ..|++++|...|+...+.. +.+..+|..+...+...|
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 3345567788899999998887733221 22222222 7899999999999988764 346788999999999999
Q ss_pred CHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 87 EQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 87 ~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
+++.|...|++. ...|++++|...|++..+.. +.+...|..+...|.+.|++++|...|++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999877 67899999999999988753 33567899999999999999999999999
Q ss_pred HHHcCCC-c----cH-------HHHHHH----------------H----HHhhcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 045820 149 AIERGVT-Q----NV-------VTLIQL----------------L----QRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 149 m~~~g~~-p----~~-------~t~~~l----------------~----~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
..+..-. + .. ..|... + +..+. ...+...|..+...|.+.|++++|.
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHH
Confidence 8764311 1 10 111111 1 11111 2235677888888899999999999
Q ss_pred HHHHHHHhc
Q 045820 197 LLLFLMYEH 205 (225)
Q Consensus 197 ~~~~~m~~~ 205 (225)
+.|++..+.
T Consensus 483 ~~~~~al~~ 491 (537)
T 3fp2_A 483 ELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988874
No 45
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.82 E-value=6.9e-07 Score=69.26 Aligned_cols=160 Identities=10% Similarity=0.053 Sum_probs=125.5
Q ss_pred hhcchhhcCcch-h------hhHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHH
Q 045820 27 AESLDLKENPRS-L------QAQRFVDK-IKASPLKERIDIFNSIKKDGTNWS-VS-DFNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 27 ~~a~~~~~~~~~-~------~~~~l~~~-~~~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~ 96 (225)
++|...+++... . .+..+... .+.|++++|..+|++..+. .|+ .. .|..+...+.+.|+++.|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 788877766332 1 12222222 3789999999999999874 454 33 79999999999999999999998
Q ss_pred HHH-------------------hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCc
Q 045820 97 NHL-------------------MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQ 156 (225)
Q Consensus 97 ~~~-------------------~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p 156 (225)
... ..|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..+.. ..|
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 862 2599999999999987642 2367889999999999999999999999999863 331
Q ss_pred cHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 157 NVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 157 ~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
+ -....|..++..+.+.|+.++|..+++++.+.
T Consensus 238 ~----------------~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 238 E----------------KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp G----------------GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred H----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 13568899999999999999999999999864
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.82 E-value=2.3e-07 Score=69.96 Aligned_cols=191 Identities=9% Similarity=-0.033 Sum_probs=131.2
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHh
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWS--VSDFNDLLMALVM 84 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~ 84 (225)
......+...|++++|+..+.+.... .+..+.. ....|++++|+..|++..+..-.++ ..+|..+-..+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34456677889999999888773221 1222323 3488999999999999887432222 2238889999999
Q ss_pred cCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHH
Q 045820 85 LNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMEL 145 (225)
Q Consensus 85 ~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 145 (225)
.|++++|...|+.. ...|++++|...|++..+. .| +...|..+-..+-..+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877 6678999999998888764 34 555666666234444589999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCc---HHHHHHHHHHHHhc-CCCCC------HHHHH
Q 045820 146 LNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK---IHKALLLLFLMYEH-GKIPS------RTSHD 215 (225)
Q Consensus 146 ~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~-g~~p~------~~~~~ 215 (225)
|++..+..- .+...+..+...+...|+ .++|...+++..+. .-.|+ ...|.
T Consensus 165 ~~~a~~~~p-------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (272)
T 3u4t_A 165 FVKVLELKP-------------------NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225 (272)
T ss_dssp HHHHHHHST-------------------TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHhCc-------------------cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 988887542 235666777777777777 77788888887753 22233 14555
Q ss_pred HHHHHhhcCC
Q 045820 216 MLIKKLDQQP 225 (225)
Q Consensus 216 ~ll~~~~~~g 225 (225)
.+-..|.+.|
T Consensus 226 ~l~~~~~~~~ 235 (272)
T 3u4t_A 226 YIAYYYTINR 235 (272)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 5655555443
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.81 E-value=2.2e-07 Score=70.08 Aligned_cols=172 Identities=14% Similarity=-0.018 Sum_probs=119.9
Q ss_pred HhCCHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGT---NWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEA 107 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a 107 (225)
..+++++|+..|+++.+... +.+..+|..+...+...|++++|...|++. ...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 35789999999999987632 125677899999999999999999999887 678999999
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-----------------HHhhc
Q 045820 108 YEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-----------------QRLEM 170 (225)
Q Consensus 108 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-----------------~~~~~ 170 (225)
.+.|++..+.. +.+..+|..+...|.+.|++++|...|+++.+.. |+........ +...
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~- 172 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE- 172 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 99999998742 2367889999999999999999999999998754 2222111111 1111
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCC--C-CHHHHHHHHHHhhcCC
Q 045820 171 GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI--P-SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 171 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~g 225 (225)
...++...+. +...+...++.++|...+++..+.... | +...+..+-..|.+.|
T Consensus 173 ~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 229 (275)
T 1xnf_A 173 KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG 229 (275)
T ss_dssp HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcC
Confidence 1223333333 566666677777777777777643211 1 1456666666665544
No 48
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.80 E-value=5.5e-07 Score=63.43 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=109.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|++..+.. +.+...+..+...+...|++++|...++. ..+.. +.+...+
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~----------------~~~~~-~~~~~~~ 79 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLER----------------SLADA-PDNVKVA 79 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------HHHHC-TTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHH----------------HHhcC-CCCHHHH
Confidence 348899999999999887653 34677788888888666666655555544 33321 3367788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
..+...+...|++++|...+++..+..- .+...+..+...+...|++++|.+++++..+..
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEANP-------------------INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCc-------------------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987642 466788889999999999999999999998754
Q ss_pred CCCCHHHHHHHHHHhhcCC
Q 045820 207 KIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 207 ~~p~~~~~~~ll~~~~~~g 225 (225)
+.+...+..+...|.+.|
T Consensus 141 -~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 141 -PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp -TTCHHHHHHHHHHHHHTT
T ss_pred -ccchHHHHHHHHHHHHcC
Confidence 345677888877776654
No 49
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.79 E-value=7.4e-07 Score=73.75 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=113.8
Q ss_pred CchhhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 10 TPFSVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
...+..+...+.+.|++++|++.+.+..... +..+.. ....|++++|...|+...+.. +-+...|..+...+
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3455577888999999999999988743221 222222 338899999999999998764 33567899999999
Q ss_pred HhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCC-----CCCCHHhHHHHHHHHHhc---
Q 045820 83 VMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDG-----LKPDVYTYTAIMDGFCKV--- 136 (225)
Q Consensus 83 ~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~--- 136 (225)
...|++++|...|++. ...|++++|...|++..+.. .......+......+.+.
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999887 67899999999999986532 111222244445677777
Q ss_pred -------CCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 137 -------GRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 137 -------g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
|++++|...|++..+..- .+..++..+-
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~ 469 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLA 469 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 999999999999987642 2445555554
No 50
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.79 E-value=2e-07 Score=70.34 Aligned_cols=156 Identities=15% Similarity=0.075 Sum_probs=109.1
Q ss_pred HhCCHHHHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHH-----------------------
Q 045820 49 KASPLKERIDIFNSIKKD------GT-NWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------------------- 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------------------- 98 (225)
..|++++|...|++..+. +- +....+|..+-..|...|++++|...|++.
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 134 (283)
T 3edt_B 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA 134 (283)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 788889998888877544 22 234566888888888889988888877665
Q ss_pred ---HhcCCHHHHHHHHHHHhhC------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCccHH-H
Q 045820 99 ---LMVGRVEEAYEMLMNVKND------GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-------VTQNVV-T 160 (225)
Q Consensus 99 ---~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~~-t 160 (225)
...|++++|...|++..+. +-.| ...++..+...|.+.|++++|...+++..+.. ..+... .
T Consensus 135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 214 (283)
T 3edt_B 135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 5568889999888887653 2233 45678899999999999999999999887641 111111 1
Q ss_pred HHHHH-------------------HHhhc---CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 161 LIQLL-------------------QRLEM---GHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 161 ~~~l~-------------------~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+..+- ...+. .......++..+...|...|++++|..++++..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 00110 1112345788899999999999999999998875
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.79 E-value=3.1e-06 Score=65.56 Aligned_cols=150 Identities=7% Similarity=-0.013 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCCHHHHHHHHHHH
Q 045820 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGRVEEAYEMLMNV 114 (225)
Q Consensus 54 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~~~~a~~~~~~m 114 (225)
++|..+|++-.+.-.+-+...|..+...+.+.|+++.|..+|++. .+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 899999999887412335568999999998888888888777665 3346666666666666
Q ss_pred hhCCCCCCHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHH
Q 045820 115 KNDGLKPDVYTYTAIMDGF-CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193 (225)
Q Consensus 115 ~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 193 (225)
.+.. +++...|....... ...|+.++|..+|++..+.. .-+...|..++..+.+.|+++
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-------------------p~~~~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-------------------GDIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-------------------TTCHHHHHHHHHHHHTTCCHH
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CCcHHHHHHHHHHHHHCCCHH
Confidence 5432 12233333222221 12466666666666665432 135778999999999999999
Q ss_pred HHHHHHHHHHhcC-CCCC--HHHHHHHHHHhhc
Q 045820 194 KALLLLFLMYEHG-KIPS--RTSHDMLIKKLDQ 223 (225)
Q Consensus 194 ~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~ 223 (225)
+|..+|+...+.. +.|+ ...|..++..+.+
T Consensus 221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999863 5663 5667666655544
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.78 E-value=6.4e-07 Score=67.90 Aligned_cols=168 Identities=9% Similarity=-0.061 Sum_probs=134.1
Q ss_pred hhhHhhhcCCC----CCChhhcchhhcCcchhhhH----HHHHH-HH----hCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 045820 12 FSVLLVDSPSR----SPSAAESLDLKENPRSLQAQ----RFVDK-IK----ASPLKERIDIFNSIKKDGTNWSVSDFNDL 78 (225)
Q Consensus 12 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~----~l~~~-~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 78 (225)
.+..+-..|.. .+++++|+..+.+....+.. .+-.. .. .+++++|+..|++..+.+ +...+..+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 116 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASL 116 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHH
Confidence 34445555556 89999999998875443322 12222 26 899999999999988875 77889999
Q ss_pred HHHHHh----cCCHHHHHHHHHHH----------------Hh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 045820 79 LMALVM----LNEQDTAVKFFSNH----------------LM----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134 (225)
Q Consensus 79 i~~~~~----~~~~~~a~~~~~~~----------------~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 134 (225)
-..|.+ .+++++|...|+.. .. .+++++|...|++..+.+ +...+..+-..|.
T Consensus 117 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 117 GGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 999999 99999999999876 33 789999999999988764 5677888888999
Q ss_pred h----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHhcC
Q 045820 135 K----VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG----VGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 135 ~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 206 (225)
+ .+++++|...|++..+.+. ...+..+-..|.+ .++.++|.+.|++..+.|
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~~---------------------~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELEN---------------------GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTTC---------------------HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCCC---------------------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9 9999999999999888642 4567777778887 899999999999998876
No 53
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.78 E-value=1.4e-07 Score=71.24 Aligned_cols=139 Identities=16% Similarity=0.081 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------------------HhcCCHHHHH
Q 045820 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------------LMVGRVEEAY 108 (225)
Q Consensus 55 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------------~~~g~~~~a~ 108 (225)
+|+++++.......+....++..+-..|...|++++|...|++. ...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 44444444443333445777899999999999999999888665 5578888888
Q ss_pred HHHHHHhhC------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 109 EMLMNVKND------GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 109 ~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
..|.+..+. .-.| ...+|..+-..|...|++++|...+++..+.... ...........++..
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT-----------RLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-----------HSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------hcCCCCHHHHHHHHH
Confidence 888887653 1123 3566888888888888888888888887764000 000000123567888
Q ss_pred HHHHHHccCcHHHHHHHHHHHHh
Q 045820 182 VIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+...|...|++++|..++++..+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999998875
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.76 E-value=2.1e-06 Score=60.99 Aligned_cols=134 Identities=11% Similarity=0.042 Sum_probs=99.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDG 132 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 132 (225)
+..+|..+=..|.+.|++++|...|++. ...|++++|...+....... +-+...+..+-..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 5677888999998889888888888776 55677777777777765532 2244556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 133 FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 133 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
+...++++.|...+.+..+... -+...+..+-..|.+.|++++|++.|++..+.. +-+..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~ 142 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-------------------VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIR 142 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-------------------cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhh
Confidence 7777777777777777665432 457788889999999999999999999998753 33567
Q ss_pred HHHHHHHHhhcCC
Q 045820 213 SHDMLIKKLDQQP 225 (225)
Q Consensus 213 ~~~~ll~~~~~~g 225 (225)
+|..+-.+|.+.|
T Consensus 143 ~~~~lg~~~~~~g 155 (184)
T 3vtx_A 143 AYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 7888877777665
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.75 E-value=2.6e-07 Score=74.12 Aligned_cols=152 Identities=11% Similarity=0.109 Sum_probs=80.6
Q ss_pred HhCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASP-LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
..|+ +++|+..|++..+..- -+...|+.+-.++.+.|++++|...|++. ...|++++|+.
T Consensus 143 ~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 143 SLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp HTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHH
Confidence 4443 5555555555544421 14444555555555555555555544444 23344444444
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHh-cCCHHHH-----HHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCK-VGRSNEA-----MELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a-----~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
.|+++.+.. +-+...|+.+-.++.+ .|..++| +..+++..+..- -+...|+.+.
T Consensus 222 ~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-------------------~~~~a~~~l~ 281 (382)
T 2h6f_A 222 YVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-------------------HNESAWNYLK 281 (382)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-------------------TCHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-------------------CCHHHHHHHH
Confidence 444444321 1133444444444444 3332333 233444333221 2456788888
Q ss_pred HHHHccC--cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 184 QALCGVG--KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 184 ~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
..+...| +.++|.+.+.++ ..-..+...+..+...|.+
T Consensus 282 ~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 282 GILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHH
T ss_pred HHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHH
Confidence 8888888 689999999888 3334466777888777765
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.73 E-value=9.7e-07 Score=76.39 Aligned_cols=155 Identities=10% Similarity=0.020 Sum_probs=102.5
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~~-~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
.+..|-..|.+.|++++|++.+++.-.. .+..+-.. .+.|++++|+..|++..+.. +-+...|..+-.++.+
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~ 89 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKE 89 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445555666666666666666552211 11112222 25666666666666655542 1134556666666644
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 045820 85 LNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163 (225)
Q Consensus 85 ~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 163 (225)
. |++++|.+.|++..+. .| +...|+.+-.+|.+.|++++|+..|++..+..-
T Consensus 90 ~----------------g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--------- 142 (723)
T 4gyw_A 90 M----------------QDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP--------- 142 (723)
T ss_dssp T----------------TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---------
T ss_pred c----------------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------
Confidence 4 5555555555555442 45 577899999999999999999999999887642
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 164 LLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 164 l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
-+...|..+...|...|++++|.+.+++..+
T Consensus 143 ----------~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 143 ----------DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp ----------CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ----------CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 3567899999999999999999988887754
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.73 E-value=1.4e-06 Score=79.12 Aligned_cols=198 Identities=12% Similarity=0.070 Sum_probs=146.9
Q ss_pred CCCchhhHhhhcCCCCCChhhcchhhcCcchh-hhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 8 SPTPFSVLLVDSPSRSPSAAESLDLKENPRSL-QAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
.++..+..+-.++...|++++|++.+.+.+.. .+..+..++ +.|++++|.+.+..-++.. +++...+.+..+|++.
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 1180 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh
Confidence 34567778889999999999999999876432 344555555 8899999999998766653 4444455699999999
Q ss_pred CCHHHHHHHHHHH------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 86 NEQDTAVKFFSNH------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 86 ~~~~~a~~~~~~~------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
++++....+.+.. ...|++++|..+|... ..|..+...|.+.|++++|.+.+++..+
T Consensus 1181 ~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n-- 1249 (1630)
T 1xi4_A 1181 NRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANS-- 1249 (1630)
T ss_pred cCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCC--
Confidence 9988655554222 6779999999999974 4899999999999999999999987632
Q ss_pred CCccHHHHHHHH------------HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 154 VTQNVVTLIQLL------------QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 154 ~~p~~~t~~~l~------------~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
..+|..+- ..+..++..+...+..++..|.+.|.+++|+.+++.-.... +-....|+-|-..|
T Consensus 1250 ----~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1250 ----TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred ----HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 23433211 23333466678889999999999999999999997766432 33445666666666
Q ss_pred hc
Q 045820 222 DQ 223 (225)
Q Consensus 222 ~~ 223 (225)
++
T Consensus 1325 aK 1326 (1630)
T 1xi4_A 1325 SK 1326 (1630)
T ss_pred Hh
Confidence 54
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.72 E-value=1.8e-07 Score=77.22 Aligned_cols=168 Identities=13% Similarity=-0.024 Sum_probs=132.3
Q ss_pred chhhHhhhcCCCCCCh-hhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSA-AESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
..+..+-..+...|++ ++|++.+.+.... .+..+-. ..+.|++++|...|++..+. .|+...|..+-..+
T Consensus 103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~ 180 (474)
T 4abn_A 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVL 180 (474)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHH
Confidence 4555777889999999 9999988773322 1222222 33889999999999998876 46778899999999
Q ss_pred Hhc---------CCHHHHHHHHHHH------------------Hhc--------CCHHHHHHHHHHHhhCCCCC----CH
Q 045820 83 VML---------NEQDTAVKFFSNH------------------LMV--------GRVEEAYEMLMNVKNDGLKP----DV 123 (225)
Q Consensus 83 ~~~---------~~~~~a~~~~~~~------------------~~~--------g~~~~a~~~~~~m~~~g~~p----~~ 123 (225)
... |++++|...|++. ... |++++|...|++..+. .| +.
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 258 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNP 258 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCH
Confidence 999 9999999999877 334 8899999999998764 34 67
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
..|..+-.+|.+.|++++|...|++..+..- -+...+..+...+...|++++|.+.+..
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------------------~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALDP-------------------AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999999887542 3456788888888888888888865543
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.70 E-value=3.1e-06 Score=63.69 Aligned_cols=151 Identities=16% Similarity=0.095 Sum_probs=105.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH---------------------HhcCCHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------------------LMVGRVE 105 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------------~~~g~~~ 105 (225)
.+..|++++|+..|++..+.. +-+...|..+...+...|++++|...|+.. ...|+++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 458899999999999988763 235568889999998889888888887766 4557777
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHH-H
Q 045820 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI-Q 184 (225)
Q Consensus 106 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li-~ 184 (225)
+|.+.|++..+.. +-+..+|..+-..|.+.|++++|...|++..+... .+...|..+. .
T Consensus 92 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-------------------~~~~~~~~l~~~ 151 (272)
T 3u4t_A 92 LAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-------------------TDPKVFYELGQA 151 (272)
T ss_dssp HHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-------------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-------------------CcHHHHHHHHHH
Confidence 7777777766532 12445677777777777777777777776665421 3455666666 4
Q ss_pred HHHccCcHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHh
Q 045820 185 ALCGVGKIHKALLLLFLMYEHGKIPS-RTSHDMLIKKL 221 (225)
Q Consensus 185 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 221 (225)
.|. .+++++|.+.|++..+.. |+ ...+..+-..+
T Consensus 152 ~~~-~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 186 (272)
T 3u4t_A 152 YYY-NKEYVKADSSFVKVLELK--PNIYIGYLWRARAN 186 (272)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHH
Confidence 444 458999999999988743 33 44444444443
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.68 E-value=4.7e-06 Score=61.29 Aligned_cols=161 Identities=14% Similarity=0.047 Sum_probs=85.5
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~~~ 110 (225)
..|++++|+..|+...+..-.++...+..+-.++...|++++|...|+.. ...|++++|...
T Consensus 19 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 98 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIAT 98 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHH
Confidence 44555555555554444332234444444444455555555555544443 445666677777
Q ss_pred HHHHhhCCCCC-CH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHH-hh---------
Q 045820 111 LMNVKNDGLKP-DV-------YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN---VVTLIQLLQR-LE--------- 169 (225)
Q Consensus 111 ~~~m~~~g~~p-~~-------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~l~~~-~~--------- 169 (225)
|++..+. .| +. ..|..+-..+.+.|++++|...|++..+. .|+ ...+..+-.. ..
T Consensus 99 ~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~~~~~a 174 (228)
T 4i17_A 99 LTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGADVLRKA 174 (228)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666553 23 33 45777888889999999999999998865 443 1122111100 00
Q ss_pred -cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 170 -MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 170 -~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
.-...+...|.... ....+.+++|...+++..+. .|+......+
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~ 219 (228)
T 4i17_A 175 TPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQM 219 (228)
T ss_dssp GGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 00011222232222 12234459999999998874 4554433333
No 61
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.61 E-value=4.7e-06 Score=55.16 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=87.9
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
+..+...+.+.|++++|...+.+..... +..+.. ....|++++|...|+++.+.+ +.+...|..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 4456677888899999999887743221 222222 338899999999999988764 33566787788888665
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 86 ~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
|++++|.. .|+++.+.. +.+..++..+...+.+.|++++|...++++.+..
T Consensus 83 ~~~~~A~~----------------~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIE----------------YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHH----------------HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHH----------------HHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 55555544 444444322 2356788889999999999999999999988653
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.61 E-value=1.9e-06 Score=71.08 Aligned_cols=154 Identities=11% Similarity=-0.062 Sum_probs=118.9
Q ss_pred HhCCH-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-----------------Hhc---------
Q 045820 49 KASPL-KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-----------------LMV--------- 101 (225)
Q Consensus 49 ~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-----------------~~~--------- 101 (225)
..|++ ++|+..|++..+.. +-+...|..+-..|.+.|++++|...|+.. ...
T Consensus 114 ~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~ 192 (474)
T 4abn_A 114 VTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHS 192 (474)
T ss_dssp SSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHH
T ss_pred hccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhh
Confidence 77899 99999999887763 335788999999999999999999988776 345
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCC
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV--------GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 173 (225)
|++++|...|++..+.. +-+...|..+-.+|... |++++|...|++..+..- . ..
T Consensus 193 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~--------------~~ 255 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR--K--------------AS 255 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG--G--------------GG
T ss_pred hhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC--C--------------cc
Confidence 88899999999887642 23577888888888888 889999999998887531 0 00
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
-+...|..+-.+|...|++++|.+.|++..+.. +-+...+..+-..+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLL 302 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 267889999999999999999999999998743 22344455554444
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.58 E-value=3.8e-06 Score=72.71 Aligned_cols=137 Identities=12% Similarity=0.080 Sum_probs=106.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYT 127 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~ 127 (225)
+.|++++|+..|++..+.. +-+..+|+.+-.+|.+.|++++|...| ++..+ +.| +...|+
T Consensus 21 ~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~----------------~~Al~--l~P~~~~a~~ 81 (723)
T 4gyw_A 21 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY----------------KEAIR--ISPTFADAYS 81 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHH--HCTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH----------------HHHHH--hCCCCHHHHH
Confidence 8899999999999887763 225677888888886666655555544 44443 245 577899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCC
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGK 207 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 207 (225)
.+-.+|.+.|++++|...|++..+..- -+...|+.+-..|.+.|++++|++.|++..+.
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P-------------------~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-- 140 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINP-------------------AFADAHSNLASIHKDSGNIPEAIASYRTALKL-- 140 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 999999999999999999999887642 35678999999999999999999999999874
Q ss_pred CC-CHHHHHHHHHHhhcCC
Q 045820 208 IP-SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 208 ~p-~~~~~~~ll~~~~~~g 225 (225)
.| +...+..+..+|.+.|
T Consensus 141 ~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 141 KPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp CSCCHHHHHHHHHHHHHTT
T ss_pred CCCChHHHhhhhhHHHhcc
Confidence 35 4567777777766543
No 64
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.54 E-value=2.3e-05 Score=65.26 Aligned_cols=135 Identities=6% Similarity=0.021 Sum_probs=80.8
Q ss_pred hCCHH-------HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCC
Q 045820 50 ASPLK-------ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGR 103 (225)
Q Consensus 50 ~~~~~-------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~ 103 (225)
.|+++ +|..+|++-.+.-.+-+...|..+...+.+.|++++|..+|+.. .+.|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 47766 77888877765322335777888888887777777777777655 23455
Q ss_pred HHHHHHHHHHHhhCCCCCC-HHhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 104 VEEAYEMLMNVKNDGLKPD-VYTYTAI-MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~-~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
+++|.++|++..+. .|+ ...|-.. ...+...|+.++|..+|++..+.. | -+...|..
T Consensus 372 ~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p-----------------~~~~~~~~ 430 (530)
T 2ooe_A 372 IKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--G-----------------DIPEYVLA 430 (530)
T ss_dssp HHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--T-----------------TCHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--C-----------------CCHHHHHH
Confidence 66666666666543 121 1112111 111234666666666666655432 1 24566666
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhc
Q 045820 182 VIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
++..+.+.|+.++|..+|+.....
T Consensus 431 ~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 431 YIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCHhhHHHHHHHHHhc
Confidence 666666777777777777776654
No 65
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=9.2e-06 Score=53.05 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 72 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
...|..+...+...|+++.|.. .|+++.+.. +.+..++..+...+.+.|++++|...++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~----------------~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIE----------------YYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH----------------HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH----------------HHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566667777755555555544 444444321 23677889999999999999999999999987
Q ss_pred cCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 152 RGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 152 ~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
... .+..++..+...|...|++++|...++++.+.. +-+...+..+-..+.+.|
T Consensus 72 ~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 72 LDP-------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred hCC-------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcc
Confidence 642 466788899999999999999999999998753 234555666655555443
No 66
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.51 E-value=5.2e-06 Score=66.54 Aligned_cols=154 Identities=8% Similarity=0.110 Sum_probs=123.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE-QDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
+.|++++|+..|++..+.. +-+...|+.+-.++.+.|+ +++|...|++. ...|++++|..
T Consensus 109 ~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 7799999999999998763 3367789999999999996 99999999887 56789999999
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc-
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG- 188 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~- 188 (225)
.|++..+.. +-+...|..+-.++.+.|++++|+..++++.+... -+...|+.+-..+.+
T Consensus 188 ~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-------------------~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 188 FIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-------------------RNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHh
Confidence 999988742 23778899999999999999999999999998653 367788888888888
Q ss_pred cCcHHHH-----HHHHHHHHhcCCCC-CHHHHHHHHHHhhcCC
Q 045820 189 VGKIHKA-----LLLLFLMYEHGKIP-SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 189 ~g~~~~a-----~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 225 (225)
.|..++| +..+++.++. .| +...|..+-..|.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC
T ss_pred cCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccC
Confidence 6665777 4778887763 34 4567777666666543
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.51 E-value=1.3e-05 Score=60.32 Aligned_cols=63 Identities=6% Similarity=-0.065 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc----------CcHHHHH
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV----------GKIHKAL 196 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~----------g~~~~a~ 196 (225)
-.+-..|.+.|++++|...|++..+..-. . ......+..+..+|... |++++|.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~--------------~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~ 215 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPD--T--------------PWADDALVGAMRAYIAYAEQSVRARQPERYRRAV 215 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--S--------------TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCC--C--------------chHHHHHHHHHHHHHHhcccchhhcccchHHHHH
Confidence 45577899999999999999999875321 0 01245677777777765 8999999
Q ss_pred HHHHHHHhc
Q 045820 197 LLLFLMYEH 205 (225)
Q Consensus 197 ~~~~~m~~~ 205 (225)
..+++..+.
T Consensus 216 ~~~~~~~~~ 224 (261)
T 3qky_A 216 ELYERLLQI 224 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
No 68
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.51 E-value=1.1e-05 Score=62.48 Aligned_cols=126 Identities=17% Similarity=0.136 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--------------------HhcCCHHHHHHHHHHHh
Q 045820 56 RIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH--------------------LMVGRVEEAYEMLMNVK 115 (225)
Q Consensus 56 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~--------------------~~~g~~~~a~~~~~~m~ 115 (225)
++..|+++.+.+ .++..++..+-.++...|++++|.+++.+. .+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665554 445555556667777777777777665443 55677888888888887
Q ss_pred hCCCCC-----CHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 045820 116 NDGLKP-----DVYTYTAIMDGFCK----VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQAL 186 (225)
Q Consensus 116 ~~g~~p-----~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~ 186 (225)
+. .| +..+...+..++.. .+++++|..+|+++.+.. |+..+-..++.++
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--------------------p~~~~~~lLln~~ 221 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--------------------PTWKTQLGLLNLH 221 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--------------------CSHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--------------------CCcccHHHHHHHH
Confidence 63 45 24455555555332 348888999999886542 5434444555589
Q ss_pred HccCcHHHHHHHHHHHHh
Q 045820 187 CGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~ 204 (225)
.+.|++++|.+.++.+.+
T Consensus 222 ~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 222 LQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHTCHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999997765
No 69
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.49 E-value=2.7e-05 Score=56.31 Aligned_cols=133 Identities=15% Similarity=0.071 Sum_probs=95.6
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|+..|++.. .|+...|..+-..+.+.|++++|...|+. ..+.. +.+...|
T Consensus 16 ~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~----------------al~~~-~~~~~~~ 74 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTR----------------SINRD-KHLAVAY 74 (213)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------HHHHC-TTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHH----------------HHHhC-ccchHHH
Confidence 458899999999998773 66888899899999776666666555554 33321 3367789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcC--CCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG--HIP-RTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
..+-.+|.+.|++++|...|++..+..-...... ....+ ..| +...|..+-.+|.+.|++++|...|+...
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHH------HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999999999999999987532100000 00000 001 23678888999999999999999999998
Q ss_pred hcC
Q 045820 204 EHG 206 (225)
Q Consensus 204 ~~g 206 (225)
+..
T Consensus 149 ~~~ 151 (213)
T 1hh8_A 149 SMK 151 (213)
T ss_dssp TTC
T ss_pred HcC
Confidence 754
No 70
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.49 E-value=2.6e-05 Score=57.40 Aligned_cols=88 Identities=8% Similarity=0.049 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC-HHhH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 045820 101 VGRVEEAYEMLMNVKNDGLKPD-VYTY-----------------TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~~p~-~~~~-----------------~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 162 (225)
.|+.++|...|++..+. .|+ ...+ -.+-..|.+.|++++|...|+++.+.--. ..
T Consensus 109 ~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~--- 181 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD--TQ--- 181 (225)
T ss_dssp CHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--SH---
T ss_pred cHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC--CC---
Confidence 46777777777777654 232 2222 23455788999999999999999875311 00
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 163 ~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
.....+..+..+|.+.|+.++|.+.++.+...+
T Consensus 182 -----------~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 182 -----------ATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----------ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112568888999999999999999999988754
No 71
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.49 E-value=5.4e-06 Score=69.69 Aligned_cols=147 Identities=5% Similarity=-0.097 Sum_probs=92.6
Q ss_pred CCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045820 23 SPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95 (225)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 95 (225)
.|++++|++.+++..... +..+-. ..+.|++++|...|++..+.. +-+...|..+-..|.+.|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777777777633221 112222 337899999999998887663 335667777878886666665555554
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC
Q 045820 96 SNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR 175 (225)
Q Consensus 96 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~ 175 (225)
+ +..+.. +-+...|..+-.+|.+.|++++|...+++..+..- .+
T Consensus 81 ~----------------~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------------------~~ 124 (568)
T 2vsy_A 81 Q----------------QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-------------------EE 124 (568)
T ss_dssp H----------------HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TC
T ss_pred H----------------HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CC
Confidence 4 443321 23567888888999999999999999999887642 35
Q ss_pred HHHHHHHHHHHHcc---CcHHHHHHHHHHHHhcC
Q 045820 176 TITFNNVIQALCGV---GKIHKALLLLFLMYEHG 206 (225)
Q Consensus 176 ~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g 206 (225)
...+..+...+... |+.++|.+.+++..+.+
T Consensus 125 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 67788888888888 99999999999887653
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.43 E-value=8.9e-06 Score=64.73 Aligned_cols=189 Identities=10% Similarity=-0.018 Sum_probs=126.5
Q ss_pred hhhcCCCCCChhhcchhhcCcchh-------h-----hHHHHH-HHHhCCHHHHHHHHHHHHhc----CC--CCChhhHH
Q 045820 16 LVDSPSRSPSAAESLDLKENPRSL-------Q-----AQRFVD-KIKASPLKERIDIFNSIKKD----GT--NWSVSDFN 76 (225)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~-------~-----~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~--~~~~~~~~ 76 (225)
.-..+...|++++|+..+.+.... . +..+-. ....|++++|+..+++..+. +- .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344577889999999888774221 1 111112 23789999999998876543 11 11245688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhh----CCC-CCCHHhHH
Q 045820 77 DLLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKN----DGL-KPDVYTYT 127 (225)
Q Consensus 77 ~li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~----~g~-~p~~~~~~ 127 (225)
.+-..|...|++++|...|++. ...|++++|.+.|.+..+ .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888999999999999988765 567999999999998765 133 23456789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC---Ccc-HHHHHHHHHHh----------------h-cCCCC-CHHHHHHHHHH
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIERGV---TQN-VVTLIQLLQRL----------------E-MGHIP-RTITFNNVIQA 185 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~g~---~p~-~~t~~~l~~~~----------------~-~~~~p-~~~~~~~li~~ 185 (225)
.+-..|.+.|++++|...+++..+... .|. ...+..+-... + .+..| ....+..+-..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999988765421 111 11122221111 1 11112 23356677788
Q ss_pred HHccCcHHHHHHHHHHHHh
Q 045820 186 LCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~ 204 (225)
|...|++++|...+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8888888888888887764
No 73
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.42 E-value=1.1e-06 Score=70.35 Aligned_cols=211 Identities=9% Similarity=-0.016 Sum_probs=114.2
Q ss_pred HhhhcCCCCCChhhcchhhcCc-----chh-----hhHHHHH-HHHhCCHHHHHHHHHHHHhc----CC-CCChhhHHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKENP-----RSL-----QAQRFVD-KIKASPLKERIDIFNSIKKD----GT-NWSVSDFNDL 78 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~-----~~~-----~~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~l 78 (225)
.+-..+...|++++|+..+.+. ... .+..+.. ....|++++|...|++..+. +- .....++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 4555667777777777766551 111 1222222 23667777777777665432 11 2234556666
Q ss_pred HHHHHhcCCHHHHHHHHHHH------------------------HhcCC-----------------HHHHHHHHHHHhhC
Q 045820 79 LMALVMLNEQDTAVKFFSNH------------------------LMVGR-----------------VEEAYEMLMNVKND 117 (225)
Q Consensus 79 i~~~~~~~~~~~a~~~~~~~------------------------~~~g~-----------------~~~a~~~~~~m~~~ 117 (225)
-..|...|+++.|...|++. ...|+ +++|.+.+.+..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 67777777777777766554 34466 67777666664321
Q ss_pred ----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccH----HHHHHHH--------------------HH
Q 045820 118 ----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNV----VTLIQLL--------------------QR 167 (225)
Q Consensus 118 ----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~----~t~~~l~--------------------~~ 167 (225)
+-.+ ...++..+-..|...|++++|...+++..+.... ++. .++..+- ..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1112 2345666777777777777777777766543110 110 1121111 00
Q ss_pred hhc-CC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHhhcCC
Q 045820 168 LEM-GH-IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH----GKIP-SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 168 ~~~-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g 225 (225)
... +. .....++..+...|...|++++|...+++..+. +-.+ ...++..+-..|.+.|
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence 010 00 012456777888888888888888888887653 1111 1235555555555443
No 74
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.39 E-value=3e-05 Score=64.53 Aligned_cols=162 Identities=10% Similarity=0.049 Sum_probs=125.4
Q ss_pred CCChh-------hcchhhcCcch------hh-hHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCC-h-hhHHHHHHHHHhc
Q 045820 23 SPSAA-------ESLDLKENPRS------LQ-AQRFVDK-IKASPLKERIDIFNSIKKDGTNWS-V-SDFNDLLMALVML 85 (225)
Q Consensus 23 ~~~~~-------~a~~~~~~~~~------~~-~~~l~~~-~~~~~~~~a~~~~~~m~~~g~~~~-~-~~~~~li~~~~~~ 85 (225)
.|+++ +|..++++... .. +..+... .+.|++++|..+|++..+. .|+ . ..|..+...+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 57765 77777665322 11 1122222 2789999999999999875 454 2 5899999999999
Q ss_pred CCHHHHHHHHHHH-------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHH
Q 045820 86 NEQDTAVKFFSNH-------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMEL 145 (225)
Q Consensus 86 ~~~~~a~~~~~~~-------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 145 (225)
|+++.|.++|+.. ...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|..+
T Consensus 370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 9999999999876 2479999999999988764 34 678899999999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 146 LNEAIERGVTQNVVTLIQLLQRLEMGHIP--RTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 146 ~~~m~~~g~~p~~~t~~~l~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|++....+-. .| ....|...+.-....|+.+.+..+++.+.+.
T Consensus 448 ~~~al~~~~~-----------------~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 448 FERVLTSGSL-----------------PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSCCS-----------------CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCC-----------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999886421 02 2458888888888899999999999998764
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.38 E-value=3.7e-05 Score=56.39 Aligned_cols=137 Identities=12% Similarity=-0.004 Sum_probs=101.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------------HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHH
Q 045820 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------------LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAI 129 (225)
Q Consensus 70 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l 129 (225)
.|+..|...-..+.+.|++++|...|+.. ...|++++|.+.|++..+. .| +...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 35577888888899999999999988776 5568899999999988764 34 56678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
-..|.+.|++++|...+++..+..-. +...+..+ ...|..+-..+...|++++|.+.|++..+. .|
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~-----------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p 148 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLY-----------AIYYLKEGQKFQQAGNIEKAEENYKHATDV--TS 148 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SC
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHH-----------HHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CC
Confidence 99999999999999999988875321 00000000 145777778888999999999999999864 56
Q ss_pred C---HHHHHHHHHHhh
Q 045820 210 S---RTSHDMLIKKLD 222 (225)
Q Consensus 210 ~---~~~~~~ll~~~~ 222 (225)
+ ...+..+-..|.
T Consensus 149 ~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 149 KKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHH
Confidence 5 345555555544
No 76
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.37 E-value=4.1e-06 Score=66.97 Aligned_cols=30 Identities=13% Similarity=0.003 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+|..+...|...|++++|.+.+++..+.
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 457888889999999999999999988653
No 77
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.37 E-value=2.4e-06 Score=65.76 Aligned_cols=179 Identities=11% Similarity=0.051 Sum_probs=107.9
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh------------hHHHHH-HHHhCCHHHHHHHHHHHHhc----CCC-CChh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVD-KIKASPLKERIDIFNSIKKD----GTN-WSVS 73 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~~-~~~~ 73 (225)
.+..+...+...|++++|++.+.+..... +..+.. ....|++++|...+++..+. +-. ....
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 34466667778888888887776632221 011111 22678888888888765432 111 1133
Q ss_pred hHHHHHHHHHhcCC--------------------HHHHHHHHHHH------------------------HhcCCHHHHHH
Q 045820 74 DFNDLLMALVMLNE--------------------QDTAVKFFSNH------------------------LMVGRVEEAYE 109 (225)
Q Consensus 74 ~~~~li~~~~~~~~--------------------~~~a~~~~~~~------------------------~~~g~~~~a~~ 109 (225)
++..+-..+...|+ ++.|...+++. ...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 67777777777888 77777766554 45677888887
Q ss_pred HHHHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 110 MLMNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 110 ~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
.+++..+. +..+ ...++..+...|.+.|++++|...+++..+.... .+.. ....++..+.
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~la 270 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--------------VEAQSCYSLG 270 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh--------------HHHHHHHHHH
Confidence 77776531 1111 1236777777778888888888877776543110 0000 1134566666
Q ss_pred HHHHccCcHHHHHHHHHHHHh
Q 045820 184 QALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..|...|++++|...+++..+
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 777777777777777776654
No 78
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.36 E-value=2.1e-06 Score=68.24 Aligned_cols=177 Identities=11% Similarity=0.057 Sum_probs=90.7
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchhh------------hHHHHH-HHHhCCHHHHHHHHHHHHhc----CC-CCChhhH
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVD-KIKASPLKERIDIFNSIKKD----GT-NWSVSDF 75 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~ 75 (225)
..+...+...|++++|+..+.+..... +..+.. ....|++++|...+++..+. +- .....++
T Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 130 (406)
T 3sf4_A 51 SQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 130 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 345555666666666666655422110 001111 12566666666666554332 10 0113355
Q ss_pred HHHHHHHHhcCC--------------------HHHHHHHHHHH------------------------HhcCCHHHHHHHH
Q 045820 76 NDLLMALVMLNE--------------------QDTAVKFFSNH------------------------LMVGRVEEAYEML 111 (225)
Q Consensus 76 ~~li~~~~~~~~--------------------~~~a~~~~~~~------------------------~~~g~~~~a~~~~ 111 (225)
..+-..|...|+ ++.|...+++. ...|++++|...|
T Consensus 131 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (406)
T 3sf4_A 131 YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210 (406)
T ss_dssp HHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred HHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 566666666666 66666555443 4456666666666
Q ss_pred HHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045820 112 MNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185 (225)
Q Consensus 112 ~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~~~~~~~~~p~~~~~~~li~~ 185 (225)
++..+. +..+ ...+|..+-..|...|++++|...+++..+.... ++.. ....++..+...
T Consensus 211 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~la~~ 276 (406)
T 3sf4_A 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--------------VEAQSCYSLGNT 276 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch--------------HHHHHHHHHHHH
Confidence 665431 1111 1225566666666666666666666655432100 0000 013456666677
Q ss_pred HHccCcHHHHHHHHHHHHh
Q 045820 186 LCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~ 204 (225)
|...|++++|...+++..+
T Consensus 277 ~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHH
Confidence 7777777777777776654
No 79
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.36 E-value=9.8e-06 Score=69.79 Aligned_cols=153 Identities=15% Similarity=0.054 Sum_probs=119.9
Q ss_pred HHHHHhCCHHHHHHHHHHHH--------hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------
Q 045820 45 VDKIKASPLKERIDIFNSIK--------KDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------ 98 (225)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------ 98 (225)
...+..|++++|+..+++.. +. -+.+...|..+-.++.+.|++++|...|++.
T Consensus 399 ~~a~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 399 LQATVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAE 477 (681)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred hhcccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 34468899999999999887 22 2345677888888999999999999988777
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
...|++++|.+.|++..+. .| +...|..+-.+|.+.|++++ ...|++..+..- -+..
T Consensus 478 ~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-------------------~~~~ 535 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-------------------GVIS 535 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-------------------TCHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-------------------chHH
Confidence 6678999999999988764 34 56778888889999999999 999988887542 3567
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhh
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS-RTSHDMLIKKLD 222 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 222 (225)
.|..+-.+|.+.|++++|.+.|++..+. .|+ ...+..+..++.
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLL 579 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHH
Confidence 8899999999999999999999987753 465 355555555543
No 80
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.35 E-value=3.1e-06 Score=65.11 Aligned_cols=181 Identities=12% Similarity=0.052 Sum_probs=128.6
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh------------hHHHHH-HHHhCC--------------------HHHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVD-KIKASP--------------------LKERID 58 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~-~~~~~~--------------------~~~a~~ 58 (225)
.+..+...+...|++++|...+.+..... +..+.. ....|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 34466777888999999998887733221 111212 226777 899998
Q ss_pred HHHHHHhc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHH
Q 045820 59 IFNSIKKD----GTN-WSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYE 109 (225)
Q Consensus 59 ~~~~m~~~----g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~ 109 (225)
.+++..+. +-. ....++..+-..+...|+++.|...+++. ...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88775432 211 22446888888999999999999988776 56799999999
Q ss_pred HHHHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 045820 110 MLMNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQ 184 (225)
Q Consensus 110 ~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~ 184 (225)
.+++..+. +..+ ...++..+-..|.+.|++++|...+++..+..... ........++..+..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------------~~~~~~~~~~~~la~ 311 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-------------KDRIGEGRACWSLGN 311 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-------------CCcHHHHHHHHHHHH
Confidence 99987642 2111 15578889999999999999999999876542110 000012457788889
Q ss_pred HHHccCcHHHHHHHHHHHHhc
Q 045820 185 ALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 185 ~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.|.+.|++++|...+++..+.
T Consensus 312 ~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 312 AYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999998764
No 81
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.35 E-value=3.6e-06 Score=66.85 Aligned_cols=179 Identities=12% Similarity=0.059 Sum_probs=128.7
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh------------hHHHHH-HHHhCC--------------------HHHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVD-KIKASP--------------------LKERID 58 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~-~~~~~~--------------------~~~a~~ 58 (225)
.+..+...+...|++++|+..+.+..... +..+.. ....|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 34466778889999999998887643221 111111 227788 999999
Q ss_pred HHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHH
Q 045820 59 IFNSIKKD----GTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYE 109 (225)
Q Consensus 59 ~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~ 109 (225)
.+++..+. +-.| ...+|..+-..+...|++++|...+++. ...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88765432 2122 2446888889999999999999988776 56799999999
Q ss_pred HHHHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 110 MLMNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 110 ~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
.+++..+. +..+ ...++..+-..|.+.|++++|...+++..+.... ++. .....++..+.
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--------------~~~~~~~~~la 314 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR--------------IGEGRACWSLG 314 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc--------------HHHHHHHHHHH
Confidence 99987642 2111 1567889999999999999999999987654211 000 01245788888
Q ss_pred HHHHccCcHHHHHHHHHHHHh
Q 045820 184 QALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..|...|++++|.+.+++..+
T Consensus 315 ~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 82
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.34 E-value=1.7e-05 Score=60.81 Aligned_cols=138 Identities=17% Similarity=0.100 Sum_probs=108.5
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------HhcCCHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------LMVGRVEEAY 108 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------~~~g~~~~a~ 108 (225)
..+.|++++|...|++..+.. +-+...+..+-..+.+.|++++|...++.. ...++.+.|.
T Consensus 127 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~ 205 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEI 205 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccH
Confidence 348899999999999988763 336778889999999999999999988765 3445566677
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG 188 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~ 188 (225)
..|.+..+.. +.+...+..+-..+...|++++|...|.+..+..-. ..+...+..+...|..
T Consensus 206 ~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-----------------~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 206 QQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-----------------AADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------GGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----------------cccchHHHHHHHHHHH
Confidence 7777766532 236778888899999999999999999998876421 0236788899999999
Q ss_pred cCcHHHHHHHHHHHH
Q 045820 189 VGKIHKALLLLFLMY 203 (225)
Q Consensus 189 ~g~~~~a~~~~~~m~ 203 (225)
.|+.++|...+++-.
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 999998888887654
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.33 E-value=7.5e-06 Score=63.34 Aligned_cols=136 Identities=10% Similarity=0.007 Sum_probs=95.0
Q ss_pred HhCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------H--hc
Q 045820 49 KASPLKERIDIFNSIKKDGT-NWSVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------L--MV 101 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------~--~~ 101 (225)
..|++++|++++.+-...|- .-+...+..++..+.+.|+.+.|.+.++.| . ..
T Consensus 112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence 67888888888877755543 236677788888888888888888888555 1 12
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----C---CccHHHHHHHHHHhhcCCC
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG-----V---TQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----~---~p~~~t~~~l~~~~~~~~~ 173 (225)
++..+|..+|+++.+. .|+..+-..++.++.+.|++++|+..++.+.+.- - .|
T Consensus 192 ~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p----------------- 252 (310)
T 3mv2_B 192 ETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL----------------- 252 (310)
T ss_dssp STTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS-----------------
T ss_pred ccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC-----------------
Confidence 3889999999998764 3553444555558999999999999999776531 0 11
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
-|..+...+|......|+ +|.+++.++.+.
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 345555444444444565 778888888764
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.32 E-value=6.9e-06 Score=56.67 Aligned_cols=137 Identities=10% Similarity=-0.017 Sum_probs=95.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYT 127 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~ 127 (225)
..|++++|+..+....... +-+...+-.+-..|.+.|++ ++|.+.|++..+. .| +..+|.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~----------------~~A~~~~~~al~~--~p~~~~a~~ 69 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEY----------------DLAKKYICTYINV--QERDPKAHR 69 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCH----------------HHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCH----------------HHHHHHHHHHHHh--CCCCHHHHH
Confidence 4577888888887765431 22344555667777555555 4555555554442 34 678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHH-HHHHHhcC
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL-LFLMYEHG 206 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g 206 (225)
.+-..|.+.|++++|...|++..+..- -+...|..+-..|.+.|+.++|.+. ++...+.
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l- 129 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNP-------------------TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL- 129 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-
Confidence 999999999999999999999987642 3567889999999999998876655 5776653
Q ss_pred CCC-CHHHHHHHHHHhhcCC
Q 045820 207 KIP-SRTSHDMLIKKLDQQP 225 (225)
Q Consensus 207 ~~p-~~~~~~~ll~~~~~~g 225 (225)
.| +..+|...-..+.++|
T Consensus 130 -~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 130 -FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp -STTCHHHHHHHHHHHHTCC
T ss_pred -CcCCHHHHHHHHHHHHHhC
Confidence 34 5566766666666655
No 85
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=2e-05 Score=56.39 Aligned_cols=158 Identities=11% Similarity=0.021 Sum_probs=95.9
Q ss_pred CCCCChhhcch---hhcCcchhhhHH---HHH-HHHhCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCH
Q 045820 21 SRSPSAAESLD---LKENPRSLQAQR---FVD-KIKASPLKERIDIFNSIKKD----GTNW-SVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 21 ~~~~~~~~a~~---~~~~~~~~~~~~---l~~-~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~ 88 (225)
...|++++|.+ .+..-....... +-. ....|++++|...+++..+. +..+ ...++..+-..+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788888887 554422111111 111 23788899999888776542 2222 344566666777677777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHH
Q 045820 89 DTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP--DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLL 165 (225)
Q Consensus 89 ~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~ 165 (225)
++|...+++. .+++. +.+-.| ....++.+-..+...|++++|...+++..+.... .+..
T Consensus 83 ~~A~~~~~~a---------l~~~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------ 144 (203)
T 3gw4_A 83 DAARRCFLEE---------RELLA---SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV------ 144 (203)
T ss_dssp HHHHHHHHHH---------HHHHH---HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH------
T ss_pred HHHHHHHHHH---------HHHHH---HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH------
Confidence 6666655432 22222 222122 2456888889999999999999999987643110 0000
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 166 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.-..++..+-..+...|++++|.+.+++..+
T Consensus 145 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 --------AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1133567788889999999999999988764
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.31 E-value=1.8e-05 Score=60.82 Aligned_cols=156 Identities=12% Similarity=-0.081 Sum_probs=110.2
Q ss_pred ChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH-
Q 045820 25 SAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKD----GTNWS-VSDFNDLLMALVMLNEQDTAVKFFSNH- 98 (225)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~- 98 (225)
++++|...+.+. .......|++++|...|++..+. |-.++ ..+|+.+-.+|.+.|++++|...|++.
T Consensus 32 ~~~~A~~~~~~a-------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 32 KFEEAADLCVQA-------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHHHHHHH-------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 466666655443 11123678888888888765432 32222 467888888888889988888877555
Q ss_pred -----------------------Hhc-CCHHHHHHHHHHHhhC----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 99 -----------------------LMV-GRVEEAYEMLMNVKND----GLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 99 -----------------------~~~-g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
... |++++|...|++..+. +-.+. ..+|+.+-..|.+.|++++|...|++.
T Consensus 105 ~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333 8899999888887642 11111 356888899999999999999999998
Q ss_pred HHcCCCccHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 150 IERGVTQNVVTLIQLLQRLEMGHIPRT-----ITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 150 ~~~g~~p~~~t~~~l~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+..... ++. ..|..+..++...|++++|...|++..+
T Consensus 185 l~~~~~~-----------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 185 IKSSMGN-----------------RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHTTSSC-----------------TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHhcC-----------------CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8764321 111 2577788889999999999999998875
No 87
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.30 E-value=3.4e-05 Score=61.34 Aligned_cols=140 Identities=12% Similarity=0.052 Sum_probs=104.4
Q ss_pred HHhCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------
Q 045820 48 IKASPLKERIDIFNSIKKD----GTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------ 98 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------ 98 (225)
...|++++|+..|++..+. +-.+ ...+|..+-..|...|+++.|...+.+.
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 3789999999999987653 2122 3467888899999999999999887665
Q ss_pred -HhcCCHHHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCccHHHHHHHHHHh
Q 045820 99 -LMVGRVEEAYEMLMNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIER----GVTQNVVTLIQLLQRL 168 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~l~~~~ 168 (225)
...|++++|...|.+..+. +-.+ ...+++.+-..|...|++++|...+++..+. +..|
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~------------ 261 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP------------ 261 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG------------
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch------------
Confidence 4568999999988886542 2112 2246888888999999999999999887763 2211
Q ss_pred hcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 169 EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 169 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
....++..+-..|.+.|++++|...+++..+
T Consensus 262 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 262 -----SLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp -----GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2356677888888888898888888887764
No 88
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.30 E-value=4.2e-05 Score=60.77 Aligned_cols=187 Identities=7% Similarity=-0.006 Sum_probs=126.7
Q ss_pred hhcCCCCCChhhcchhhcCcchh--------h----hHHHHH-HHHhCCHHHHHHHHHHHHhc----CC-CC-ChhhHHH
Q 045820 17 VDSPSRSPSAAESLDLKENPRSL--------Q----AQRFVD-KIKASPLKERIDIFNSIKKD----GT-NW-SVSDFND 77 (225)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~--------~----~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~-~~-~~~~~~~ 77 (225)
-..+...|++++|+..+.+.... . +..+-. ....|+++.|...+++..+. +- .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 33467889999999888763221 1 111222 23889999999998876432 11 11 3556888
Q ss_pred HHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhh-----CCCCCCHHhHHH
Q 045820 78 LLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKN-----DGLKPDVYTYTA 128 (225)
Q Consensus 78 li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 128 (225)
+-..|...|++++|...|++. ...|++++|.+.|.+..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 888999999999999988665 567999999999998875 32 224677889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC---cc-HHHHHHHHHHh----------------h-cCCCCC-HHHHHHHHHHH
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVT---QN-VVTLIQLLQRL----------------E-MGHIPR-TITFNNVIQAL 186 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~---p~-~~t~~~l~~~~----------------~-~~~~p~-~~~~~~li~~~ 186 (225)
+-..|.+.|++++|...+++..+.... |. ...+..+-... + .+..|+ ...+..+-..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 999999999999999999998865322 11 22222222111 1 111122 23556677888
Q ss_pred HccCcHHHHHHHHHHHHh
Q 045820 187 CGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~ 204 (225)
...|++++|...|++..+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888889998888888764
No 89
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.29 E-value=1e-05 Score=57.19 Aligned_cols=159 Identities=13% Similarity=0.077 Sum_probs=105.0
Q ss_pred CchhhHhhhcCCCCCChhhcchhhcCcchhhh------HHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 045820 10 TPFSVLLVDSPSRSPSAAESLDLKENPRSLQA------QRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMAL 82 (225)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 82 (225)
..........+.+.|++++|+..+++.....- ..+.. ..+.|++++|+..|+...+.. |+...+ .+...+
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~-~~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYK-SLIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHH-HHHHHH
Confidence 34445556677788999999988887443321 11222 337899999999998876542 333322 222111
Q ss_pred HhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 045820 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTL 161 (225)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 161 (225)
.. ...+...+|...|++..+. .| +...+..+-..+.+.|++++|...|++..+..-.+
T Consensus 83 ~~--------------~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----- 141 (176)
T 2r5s_A 83 EL--------------HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA----- 141 (176)
T ss_dssp HH--------------HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT-----
T ss_pred HH--------------HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-----
Confidence 00 0001112356666666543 45 57888999999999999999999999988764210
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 162 IQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 162 ~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+...+..+...+...|+.++|...|++...
T Consensus 142 ------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 142 ------------QDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 2356888999999999999999999987654
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.28 E-value=4.7e-05 Score=55.35 Aligned_cols=151 Identities=16% Similarity=0.105 Sum_probs=91.5
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCC-hhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHH
Q 045820 46 DKIKASPLKERIDIFNSIKKDGTNWS-VSDFND----------------LLMALVMLNEQDTAVKFFSNHLMVGRVEEAY 108 (225)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~ 108 (225)
..+..|++++|+..|++..+. .|+ ...|.. +-.++ ...|++++|.
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~----------------~~~g~~~~A~ 74 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAY----------------KKNRNYDKAY 74 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH----------------HHTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHH----------------HHCCCHHHHH
Confidence 345788899999888887765 332 333433 34444 3445556666
Q ss_pred HHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---------------HHhhcCC
Q 045820 109 EMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL---------------QRLEMGH 172 (225)
Q Consensus 109 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~---------------~~~~~~~ 172 (225)
..|++..+. .| +...|..+-..|.+.|++++|...|++..+..-. +..++..+- .....-.
T Consensus 75 ~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 75 LFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 666665543 34 5677888888888888888888888887765321 233333221 0111122
Q ss_pred CCCHHH--HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 173 IPRTIT--FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 173 ~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
.|+... +...-.++...|++++|...|++..+ +.|+......+.+
T Consensus 152 ~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 152 SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 344333 33344455668999999999999986 4688776665544
No 91
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.26 E-value=8.8e-05 Score=49.45 Aligned_cols=92 Identities=12% Similarity=0.032 Sum_probs=73.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|...+++..+..- .+...
T Consensus 24 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~a 83 (126)
T 4gco_A 24 FKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-------------------KFIKG 83 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-------------------hhhHH
Confidence 45566666777776665432 33678899999999999999999999999987643 46788
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
|..+-.+|...|++++|.+.|++..+. .|+..
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~ 115 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQV--DPSNE 115 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCH
Confidence 999999999999999999999999874 46543
No 92
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.26 E-value=4.3e-05 Score=50.50 Aligned_cols=119 Identities=11% Similarity=-0.007 Sum_probs=85.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 69 NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 69 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
..+...|..+-..+.+.|+++ +|...|++..+.. +.+...+..+...|.+.|++++|...+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------------~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 75 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYP----------------QAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEE 75 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSH----------------HHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHH----------------HHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 345566777777775555554 5555555544431 23677889999999999999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 149 AIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 149 m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
..+..- .+...|..+...|.+.|++++|.+.+++..+.. +-+...+..+-..+.++
T Consensus 76 a~~~~~-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 76 CIQLEP-------------------TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHhCC-------------------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 987642 456788889999999999999999999988642 12345566666555543
No 93
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.24 E-value=5.2e-05 Score=69.15 Aligned_cols=185 Identities=13% Similarity=0.080 Sum_probs=103.9
Q ss_pred hcCCCCCChhhcchhhcCcchhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 18 DSPSRSPSAAESLDLKENPRSLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 96 (225)
..+...|.++||..++++-....- .+-..+ ..+++++|.++.++.. +..+|..+-.++.+.|++++|.+.|.
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~-A~~VLie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTS-AVQVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHH-HHHHHHHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345556777777777766542111 111122 5566777777766442 46667777777777777777776664
Q ss_pred HH-------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 045820 97 NH-------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQ 163 (225)
Q Consensus 97 ~~-------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 163 (225)
+. .+.|++++|.+.|....+.. ++....+.+.-+|++.+++++...... .|+...|..
T Consensus 1130 KAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~ 1200 (1630)
T 1xi4_A 1130 KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQ 1200 (1630)
T ss_pred hcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHH
Confidence 44 55677777777776555432 232223346777777777665443321 222222222
Q ss_pred HHH-HhhcCC-------CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 164 LLQ-RLEMGH-------IPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 164 l~~-~~~~~~-------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
+-. ..+.|. =-....|..+..+|++.|++++|.+.+++. -+..+|.-+-.+|.++
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 211 111110 001347788888888888888888887765 3557777666666543
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.23 E-value=4.6e-05 Score=58.48 Aligned_cols=177 Identities=9% Similarity=-0.036 Sum_probs=118.0
Q ss_pred hhHhhhcCCCCCChhhcchhhcCcchh------------hhHHHHHHH-HhCCHHHHHHHHHHHHhc----CCCC-Chhh
Q 045820 13 SVLLVDSPSRSPSAAESLDLKENPRSL------------QAQRFVDKI-KASPLKERIDIFNSIKKD----GTNW-SVSD 74 (225)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~l~~~~-~~~~~~~a~~~~~~m~~~----g~~~-~~~~ 74 (225)
+......|...|++++|++.+.+.-.. .+..+-..+ +.|++++|+..|++-.+. |-.. -..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334455677889999999888763322 122233333 779999999999876543 2111 1457
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhhCCCCCCH------
Q 045820 75 FNDLLMALVML-NEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKNDGLKPDV------ 123 (225)
Q Consensus 75 ~~~li~~~~~~-~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~~g~~p~~------ 123 (225)
|+.+-..|... |++++|...|++. ...|++++|...|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88888999996 9999999887655 5679999999999998875322221
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--ccCcHHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALC--GVGKIHKALLLLFL 201 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~ 201 (225)
..|..+..++...|++++|...|++..+. .|+... ......+..++.+|. ..+++++|+..|+.
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~------------~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFAD------------SRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCC------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 15677788899999999999999987653 221100 011223455566665 45778888888876
Q ss_pred HH
Q 045820 202 MY 203 (225)
Q Consensus 202 m~ 203 (225)
+.
T Consensus 266 ~~ 267 (292)
T 1qqe_A 266 FM 267 (292)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 95
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.23 E-value=0.00011 Score=48.19 Aligned_cols=104 Identities=14% Similarity=0.048 Sum_probs=77.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
..|++++|...|++..... +.+...|..+...+...|++++|...+++..+... .+...|
T Consensus 24 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~ 83 (131)
T 2vyi_A 24 KVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-------------------AYSKAY 83 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHH
T ss_pred HccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-------------------cCHHHH
Confidence 3445555555555554422 23677889999999999999999999999887642 356788
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcC
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 224 (225)
..+...|...|++++|...+++..+.. +.+...+..+..++.+.
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHH
Confidence 888899999999999999999998753 23566666666666543
No 96
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.20 E-value=0.00017 Score=58.68 Aligned_cols=197 Identities=11% Similarity=-0.012 Sum_probs=116.8
Q ss_pred CchhhHhhhcCCCCCChhhcchhhcCcchh---------------hhHHHHH-HHHhCCHHHHHHHHHHHHhc-----C-
Q 045820 10 TPFSVLLVDSPSRSPSAAESLDLKENPRSL---------------QAQRFVD-KIKASPLKERIDIFNSIKKD-----G- 67 (225)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~l~~-~~~~~~~~~a~~~~~~m~~~-----g- 67 (225)
...|+.|-..+.+.|++++|++.+.+.... .+..+-. ....|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345556667777788888888777652211 1111211 22667777777776654321 0
Q ss_pred CC-CChhhHHHHHHHHHhc--CCHHHHHHHHHHH----------------------------------------------
Q 045820 68 TN-WSVSDFNDLLMALVML--NEQDTAVKFFSNH---------------------------------------------- 98 (225)
Q Consensus 68 ~~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~~---------------------------------------------- 98 (225)
.. ....+++..-.++... +++++|...|++.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 11 1233444444444443 3466666666554
Q ss_pred -------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 99 -------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 99 -------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
...|+.++|.+++++..... +.+..+++.+-..|.+.|++++|...+++..+..-. +..++..+-
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHH
Confidence 12356677888887766532 335667888899999999999999999998875322 233332221
Q ss_pred --------------------------------HHhh---cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCC
Q 045820 166 --------------------------------QRLE---MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208 (225)
Q Consensus 166 --------------------------------~~~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 208 (225)
..++ .-...+..+|..+-..|...|++++|...|++..+....
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 0000 011234567888889999999999999999998875433
No 97
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.17 E-value=0.00012 Score=50.38 Aligned_cols=121 Identities=8% Similarity=-0.040 Sum_probs=87.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|++..+.. +.+..+|..+-..+...|++++|...|+ +..+.. +.+...|
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~----------------~a~~~~-~~~~~~~ 84 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDAT----------------RAIELD-KKYIKGY 84 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH----------------HHHHHC-TTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH----------------HHHHhC-cccHHHH
Confidence 348899999999999887763 3367778888888866666655555544 443321 2356788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHH--HHHHHHHccCcHHHHHHHHHHHHh
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFN--NVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
..+-..+.+.|++++|...|++..+..- .+...+. .....+...|++++|...+.....
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p-------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVKP-------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8999999999999999999999987642 2333443 333447778999999999887643
No 98
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.15 E-value=5e-05 Score=53.38 Aligned_cols=120 Identities=6% Similarity=0.055 Sum_probs=85.7
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
..|++++|...++...+.. +.+...|..+-..|...|+++.|...|+. ..+.. +.+...+..
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~----------------al~~~-p~~~~~~~~ 83 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQ----------------ALQLR-GENAELYAA 83 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------HHHHH-CSCHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH----------------HHHcC-CCCHHHHHH
Confidence 4677788888887776653 34667788888888666666655555544 33321 235667777
Q ss_pred HHHH-HHhcCCH--HHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 129 IMDG-FCKVGRS--NEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 129 ll~~-~~~~g~~--~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
+..+ |.+.|++ ++|...+++..+..- -+...|..+...|...|++++|...+++..+.
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALDS-------------------NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhCC-------------------CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777 7789998 999999999887642 34677888889999999999999999998874
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.14 E-value=0.00025 Score=51.63 Aligned_cols=137 Identities=12% Similarity=-0.027 Sum_probs=99.5
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHH--------------------HhcCCH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN----EQDTAVKFFSNH--------------------LMVGRV 104 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~~--------------------~~~g~~ 104 (225)
..+++++|...|++-.+.| +...+..|=..|.. + +.++|...|+.. ...++.
T Consensus 30 ~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~ 105 (212)
T 3rjv_A 30 SSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDV 105 (212)
T ss_dssp HHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCH
T ss_pred cCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCH
Confidence 6788888888888877765 45666666666666 5 788888887766 126788
Q ss_pred HHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 105 EEAYEMLMNVKNDGLK-PDVYTYTAIMDGFCK----VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
++|.++|.+..+.|.. -+...+..+-..|.. .+++++|...|++..+.+ .+...+
T Consensus 106 ~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--------------------~~~~a~ 165 (212)
T 3rjv_A 106 AHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--------------------RTGYAE 165 (212)
T ss_dssp HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--------------------CTTHHH
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--------------------CCHHHH
Confidence 8999999888876532 126677888888888 789999999999988762 223455
Q ss_pred HHHHHHHHcc-C-----cHHHHHHHHHHHHhcCCCC
Q 045820 180 NNVIQALCGV-G-----KIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 180 ~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~~p 209 (225)
..|-..|... | +.++|..+|+...+.|...
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 5565666543 3 8999999999998887443
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.14 E-value=4.4e-05 Score=59.04 Aligned_cols=140 Identities=12% Similarity=0.025 Sum_probs=93.0
Q ss_pred HhCCHHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------H
Q 045820 49 KASPLKERIDIFNSIKKD----GTNW-SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------L 99 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------~ 99 (225)
..|++++|...|.+..+. |-.+ -..+|+.+-..|.+.|++++|...|++. .
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 567788887777665432 1111 1346777777777777777777666543 3
Q ss_pred hcCCHHHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC
Q 045820 100 MVGRVEEAYEMLMNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p 174 (225)
. |++++|...|++..+. |-.+ ...+++.+-..|.+.|++++|...|++..+.... .+..+
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~~ 192 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE--------------MENYP 192 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------TTCHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------cCChh
Confidence 3 7888888888776531 2111 1457888899999999999999999988763210 00001
Q ss_pred C-HHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 175 R-TITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 175 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+ ...+..+..++...|++++|...|++..
T Consensus 193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1 2356667777778899999999999887
No 101
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.13 E-value=0.00079 Score=55.34 Aligned_cols=188 Identities=12% Similarity=0.077 Sum_probs=119.3
Q ss_pred CCChhhcchhhcCcchhhhHH----HHHHH-H----hCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHH
Q 045820 23 SPSAAESLDLKENPRSLQAQR----FVDKI-K----ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM----LNEQD 89 (225)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~----l~~~~-~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~ 89 (225)
.+++++|.+.+.+.-..+... +-..+ . .++.++|...|++..+.| +...+..|-..|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 677778877776643333222 22222 4 678888888888877665 55666667777777 67888
Q ss_pred HHHHHHHHH----------------Hh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHH
Q 045820 90 TAVKFFSNH----------------LM----VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCK----VGRSNEAMEL 145 (225)
Q Consensus 90 ~a~~~~~~~----------------~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~ 145 (225)
+|...|+.. .. .++.++|.+.|++..+.| +...+..+-..|.+ .++.++|...
T Consensus 133 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 888888766 11 567888888888877654 56677777777777 7888888888
Q ss_pred HHHHHHcCCCccHHHHHHHHHHhhcC--CC----------------CCHHHHHHHHHHHHc----cCcHHHHHHHHHHHH
Q 045820 146 LNEAIERGVTQNVVTLIQLLQRLEMG--HI----------------PRTITFNNVIQALCG----VGKIHKALLLLFLMY 203 (225)
Q Consensus 146 ~~~m~~~g~~p~~~t~~~l~~~~~~~--~~----------------p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~ 203 (225)
|++..+.|. ...+..+-.+...| .. .+...+..+-..|.. .++.++|..+|+...
T Consensus 210 ~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 210 YRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 888777653 22232222222111 11 234455555556665 778888888888877
Q ss_pred hcCCCCCHHHHHHHHHHhh
Q 045820 204 EHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 204 ~~g~~p~~~~~~~ll~~~~ 222 (225)
+.| +...+..|-..|.
T Consensus 287 ~~~---~~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 287 EQG---NSDGQYYLAHLYD 302 (490)
T ss_dssp TTT---CHHHHHHHHHHHH
T ss_pred HcC---CHHHHHHHHHHHH
Confidence 654 3444444444443
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.12 E-value=3.8e-05 Score=53.17 Aligned_cols=91 Identities=16% Similarity=0.034 Sum_probs=73.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
.+.|++++|...|++.... .| +...|..+-.+|.+.|++++|...|++..+..- -+..
T Consensus 47 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-------------------~~~~ 105 (151)
T 3gyz_A 47 YNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-------------------NDYT 105 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-------------------SCCH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-------------------CCcH
Confidence 4456666666677666653 34 678899999999999999999999999988652 3567
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
.|..+-.+|...|++++|...|+...+.. |+..
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 88999999999999999999999998753 5543
No 103
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.12 E-value=0.0002 Score=56.85 Aligned_cols=144 Identities=13% Similarity=0.070 Sum_probs=102.5
Q ss_pred HHhCCHHHHHHHHHHHHhcCC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHH------------------------
Q 045820 48 IKASPLKERIDIFNSIKKDGT-NW----SVSDFNDLLMALVMLNEQDTAVKFFSNH------------------------ 98 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~------------------------ 98 (225)
...|++++|+..|++..+..- .+ ...++..+-..|...|+++.|...+.+.
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 388999999999998765411 12 3456788888899999999888877654
Q ss_pred -HhcCCHHHHHHHHHHHhh----CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCC
Q 045820 99 -LMVGRVEEAYEMLMNVKN----DGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGH 172 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~ 172 (225)
...|++++|.+.|.+..+ .+-.+ ...+++.+-..|...|++++|...+++..+... ..+.
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~--------------~~~~ 257 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR--------------EKVP 257 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------------HHCG
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--------------hhCC
Confidence 456888888888877654 12112 234577777888888888888888887765210 0011
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 173 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.....++..+-..|.+.|++++|...+++..+.
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 123567888889999999999999999988763
No 104
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.11 E-value=0.00046 Score=56.79 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM----LNEQDTAVKFFSNH 98 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~ 98 (225)
+++++|...|+...+.| +...+..+-..|.. .++.++|.+.|+..
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 45555555555554443 33344444444444 44555555555443
No 105
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.10 E-value=0.00023 Score=55.81 Aligned_cols=144 Identities=10% Similarity=-0.039 Sum_probs=98.6
Q ss_pred CChhhcchhhcCcchhhh------HHHHH-HHHhCCHHHHHHHHHHHHhcCCCCC--------------hhhHHHHHHHH
Q 045820 24 PSAAESLDLKENPRSLQA------QRFVD-KIKASPLKERIDIFNSIKKDGTNWS--------------VSDFNDLLMAL 82 (225)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~------~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~~ 82 (225)
+++++|++.+........ ..+-. +.+.|++++|+..|++..+..-... ...|..+-.+|
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666655332221 11112 3489999999999998876632211 46777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 045820 83 VMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLI 162 (225)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 162 (225)
.+.|++++|.. .|++..+.. +.+...|..+-.+|.+.|++++|...|++..+..-
T Consensus 207 ~~~g~~~~A~~----------------~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-------- 261 (336)
T 1p5q_A 207 LKLQAFSAAIE----------------SCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-------- 261 (336)
T ss_dssp HHTTCHHHHHH----------------HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------
T ss_pred HHcCCHHHHHH----------------HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--------
Confidence 66665555544 444444421 23678899999999999999999999999987642
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHH-HHHHHHHH
Q 045820 163 QLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA-LLLLFLMY 203 (225)
Q Consensus 163 ~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 203 (225)
-+...+..+...+.+.|+.++| ..+++.|.
T Consensus 262 -----------~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 262 -----------NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -----------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888999999999888 45666663
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.09 E-value=0.0002 Score=54.76 Aligned_cols=144 Identities=9% Similarity=-0.064 Sum_probs=82.0
Q ss_pred HHHhCCHHHHHHHHHHHHhcC-CCCChh----hHHHHHHHHHhcCCHHHHHHHHHHH-----------------------
Q 045820 47 KIKASPLKERIDIFNSIKKDG-TNWSVS----DFNDLLMALVMLNEQDTAVKFFSNH----------------------- 98 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g-~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~----------------------- 98 (225)
.+..|++++|..++++..+.. ..|+.. .+..+...+...++++.|...|++.
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 346666667766666655432 122211 1222334444445555555554443
Q ss_pred -HhcCCHHHHHHHHHHHhh----C-CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcC
Q 045820 99 -LMVGRVEEAYEMLMNVKN----D-GLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~----~-g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 171 (225)
...|++++|...|++..+ . +..+. ..+|+.+-..|.+.|++++|...+++..+... ..+
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~--------------~~~ 230 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC--------------RIN 230 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------HTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------HcC
Confidence 334555555555555442 1 22222 23677777788888888888888777654311 011
Q ss_pred CCCC-HHHHHHHHHHHHccC-cHHHHHHHHHHHHh
Q 045820 172 HIPR-TITFNNVIQALCGVG-KIHKALLLLFLMYE 204 (225)
Q Consensus 172 ~~p~-~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 204 (225)
..+. ..+|..+-.+|.+.| ++++|.+.+++...
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 1122 567888889999999 56999998887753
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.09 E-value=3.6e-05 Score=54.29 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=82.9
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchhh----hHHHHHHH---HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSLQ----AQRFVDKI---KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~l~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+...+.+.|++++|+..+++..... +..+...+ ..+....+...+++..+.. +-+...+..+-..+.
T Consensus 41 ~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~ 119 (176)
T 2r5s_A 41 DVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYN 119 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 445577778889999999999998854332 22221111 2233345677887777652 225677777777785
Q ss_pred hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 84 MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
.. |++++|...|.+..+....+ +...+..+...+...|+.++|...|++...
T Consensus 120 ~~----------------g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 120 QV----------------GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HT----------------TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred Hc----------------ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 44 55566666666666543322 356888999999999999999999987654
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.08 E-value=0.0001 Score=50.99 Aligned_cols=123 Identities=10% Similarity=0.005 Sum_probs=85.5
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTA 91 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a 91 (225)
....+.+.+...+.+.+++++-..-...-+..-....+.|++++|...|++..+.. +-+...|..+-.+|.+.|++
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~--- 86 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQF--- 86 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccH---
Confidence 34455555666666666665433222222333333558999999999999998773 33677888888888555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 92 VKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 92 ~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
++|...|++..+. .| +...|..+-.+|.+.|++++|...|++..+..
T Consensus 87 -------------~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 87 -------------QQAADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp -------------HHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -------------HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4555555555442 34 56788899999999999999999999998864
No 109
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.08 E-value=0.00046 Score=52.73 Aligned_cols=143 Identities=10% Similarity=-0.041 Sum_probs=92.1
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCC-h----hhHHHHHHHHHhcCCHHHHHHHHHHH-----------------------
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWS-V----SDFNDLLMALVMLNEQDTAVKFFSNH----------------------- 98 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~-~----~~~~~li~~~~~~~~~~~a~~~~~~~----------------------- 98 (225)
.+..|++++|...+....+..-..+ . ..+..+...+...|++++|...+++.
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4578888888888877665422211 1 12333444556667777777766554
Q ss_pred -HhcCCHHHHHHHHHHHhh----CCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcC
Q 045820 99 -LMVGRVEEAYEMLMNVKN----DGLKP--DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171 (225)
Q Consensus 99 -~~~g~~~~a~~~~~~m~~----~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 171 (225)
...|++++|...|++..+ .+-.+ ...+|+.+-..|.+.|++++|...+++..+.... .+
T Consensus 165 y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--------------~~ 230 (293)
T 2qfc_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--------------IN 230 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------TT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--------------cC
Confidence 456777777777777652 11112 2257788888888888888888888876643110 00
Q ss_pred CCC-CHHHHHHHHHHHHccCcHHHH-HHHHHHHH
Q 045820 172 HIP-RTITFNNVIQALCGVGKIHKA-LLLLFLMY 203 (225)
Q Consensus 172 ~~p-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 203 (225)
... -..+|..+-..|.+.|+.++| ...+++..
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 011 256788888999999999999 77677654
No 110
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.07 E-value=0.00052 Score=43.93 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=67.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
..|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+..- .+...|
T Consensus 16 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------------~~~~~~ 75 (118)
T 1elw_A 16 SVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-------------------DWGKGY 75 (118)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------------------TCHHHH
T ss_pred HcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-------------------ccHHHH
Confidence 3455555555555554432 23677888899999999999999999999887642 356788
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+..+|...|++++|.+.+++..+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 88999999999999999999998864
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.06 E-value=0.0001 Score=56.40 Aligned_cols=121 Identities=13% Similarity=0.068 Sum_probs=71.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH--HH--------
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--QR-------- 167 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~--~~-------- 167 (225)
...|++++|...|++..+. .| +...+..+...+.+.|++++|...+++.... .|+........ ..
T Consensus 128 ~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCH
T ss_pred HhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCc
Confidence 3445555555555555442 23 4455666666666666666666666655433 23322111111 00
Q ss_pred --------hhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhhcC
Q 045820 168 --------LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI-PSRTSHDMLIKKLDQQ 224 (225)
Q Consensus 168 --------~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~ 224 (225)
... -..+...+..+-..|...|++++|...+.+..+..-. .+...+..+...|...
T Consensus 204 a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 204 EIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 011 1245788999999999999999999999999975321 1256677777766543
No 112
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.06 E-value=0.00019 Score=45.60 Aligned_cols=102 Identities=10% Similarity=-0.044 Sum_probs=75.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
+...|..+-..+.+.|++++ |...|++..+.. +.+...|..+-..+.+.|++++|...+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~----------------A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTE----------------SIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHH----------------HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHH----------------HHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34556666667755555554 455555444322 2366788889999999999999999999998
Q ss_pred HcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHhcC
Q 045820 151 ERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGV-GKIHKALLLLFLMYEHG 206 (225)
Q Consensus 151 ~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g 206 (225)
+..-. ..+...|..+...+... |++++|.+.++...+..
T Consensus 68 ~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 68 NVIED-----------------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTSCC-----------------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HhCcc-----------------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 76420 01578899999999999 99999999999998753
No 113
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.06 E-value=2.7e-05 Score=67.08 Aligned_cols=130 Identities=13% Similarity=0.138 Sum_probs=102.2
Q ss_pred CCCCChhhcchhhcCcc-----------hhhhHHHH----HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 045820 21 SRSPSAAESLDLKENPR-----------SLQAQRFV----DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML 85 (225)
Q Consensus 21 ~~~~~~~~a~~~~~~~~-----------~~~~~~l~----~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 85 (225)
...|++++|++.+++.. ........ .....|++++|+..|++..+.. +-+...|..+-.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999998877643 12222222 2348899999999999988763 33677899999999999
Q ss_pred CCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 86 NEQDTAVKFFSNH------------------LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 86 ~~~~~a~~~~~~~------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
|++++|...|++. .+.|++++ .+.|++..+.. +-+...|..+-.+|.+.|++++|...|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999887 56788888 88888877642 2366789999999999999999999999
Q ss_pred HHHHcC
Q 045820 148 EAIERG 153 (225)
Q Consensus 148 ~m~~~g 153 (225)
+..+..
T Consensus 559 ~al~l~ 564 (681)
T 2pzi_A 559 EVPPTS 564 (681)
T ss_dssp TSCTTS
T ss_pred hhcccC
Confidence 877643
No 114
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=0.00078 Score=45.17 Aligned_cols=100 Identities=16% Similarity=0.079 Sum_probs=74.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPD----VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p 174 (225)
...|++++|...|++..+. .|+ ...|..+-..|.+.|++++|...+++..+..- .
T Consensus 39 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------------------~ 97 (148)
T 2dba_A 39 FKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-------------------G 97 (148)
T ss_dssp HTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-------------------C
T ss_pred HHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-------------------c
Confidence 3445556666666666553 455 67788889999999999999999999887632 3
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHh
Q 045820 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS-RTSHDMLIKKL 221 (225)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 221 (225)
+...|..+..+|...|++++|...|++..+. .|+ ...+..+-...
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNIS 143 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Confidence 5678888889999999999999999999874 344 44554444443
No 115
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.05 E-value=0.0011 Score=53.92 Aligned_cols=169 Identities=12% Similarity=-0.005 Sum_probs=113.8
Q ss_pred HhCCHHHHHHHHHHHHhc--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------------------
Q 045820 49 KASPLKERIDIFNSIKKD--------GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---------------------- 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~--------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---------------------- 98 (225)
..|+.++|++.|++-.+. ...-...+|+.+-.+|...|++++|...+++.
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 789999999999764321 12334678999999999999999999888765
Q ss_pred ------HhcCCHHHHHHHHHHHhhCCCCCC-HHhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---
Q 045820 99 ------LMVGRVEEAYEMLMNVKNDGLKPD-VYTYTAIMDG---FCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL--- 165 (225)
Q Consensus 99 ------~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~--- 165 (225)
...+++++|...|++..+. .|+ ...+..+..+ +...++.++|+..+++..+.... +..++..+-
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~ 219 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHH
Confidence 1235789999999998763 453 3444444333 45667888899999888765422 233332221
Q ss_pred --------------HHhh---cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 166 --------------QRLE---MGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 166 --------------~~~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
..++ .-...+...+..+...|...|++++|...+++..+.. +-+..++..+-..|
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCY 291 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 1111 1123456778889999999999999999999998753 22344555444433
No 116
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.05 E-value=0.00035 Score=55.04 Aligned_cols=143 Identities=13% Similarity=0.024 Sum_probs=90.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHH------------------------Hh
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVS----DFNDLLMALVMLNEQDTAVKFFSNH------------------------LM 100 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~------------------------~~ 100 (225)
..|++++|...+++..+..-..+.. +++.+-..+...|+++.|...+++. ..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 5566666666666654432111111 3344445555566666666655443 34
Q ss_pred cCCHHHHHHHHHHHhh----CCCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCC
Q 045820 101 VGRVEEAYEMLMNVKN----DGLK--P-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~----~g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 173 (225)
.|++++|...+++..+ .+.. | ....+..+-..+...|++++|...+++........ +..
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~ 171 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--------------QPQ 171 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--------------CGG
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc--------------CcH
Confidence 5677777777666543 2222 3 23456777888999999999999999887653221 000
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
....+|..+...+...|++++|...+++..+.
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12356777888899999999999999998753
No 117
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.05 E-value=1.8e-05 Score=51.91 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=78.1
Q ss_pred hcCCHHHHHHHHHHHhhCCC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGL-KP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
..|++++|...|++..+.+. .| +...|..+-..|.+.|++++|...|++..+..- -+..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~ 62 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-------------------NHQA 62 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CchH
Confidence 35778888888888877431 13 456788999999999999999999999988653 3567
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhc
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEH-GKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~ 223 (225)
.+..+..++...|++++|...+++..+. .-.|+...|...+..|.+
T Consensus 63 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 8888999999999999999999998864 334455556555655543
No 118
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.05 E-value=0.00026 Score=50.77 Aligned_cols=155 Identities=13% Similarity=-0.040 Sum_probs=87.5
Q ss_pred HhhhcCCCCCChhhcchhhcCcchhhhHH------HH-HHHHhCCHHHHHHHHHHHHhcCC-CCC--------------h
Q 045820 15 LLVDSPSRSPSAAESLDLKENPRSLQAQR------FV-DKIKASPLKERIDIFNSIKKDGT-NWS--------------V 72 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------l~-~~~~~~~~~~a~~~~~~m~~~g~-~~~--------------~ 72 (225)
.......-.|.++++.+.+.......... +- ..++.|++++|+..|++..+..- .|+ .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 34455666778888888887654332221 11 23489999999999998876421 111 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 73 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..|..+-.+|.+.|++ ++|...+++..+.. +.+...|..+-.+|.+.|++++|...|++..+.
T Consensus 89 ~~~~~la~~~~~~~~~----------------~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDY----------------PKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCH----------------HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCH----------------HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5566666666555554 55555555544421 336778889999999999999999999998876
Q ss_pred CCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHH-HHHHHHHhc
Q 045820 153 GVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL-LLLFLMYEH 205 (225)
Q Consensus 153 g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~ 205 (225)
.- -+...+..+..++...++.+++. ..+..|...
T Consensus 152 ~p-------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NP-------------------NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp ST-------------------TCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 42 34567777777777777777666 555555443
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.05 E-value=0.00055 Score=44.24 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=67.7
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|++..+.. +.+..+|..+...+.+.|++++|..+|+. +.+.. +.+..++
T Consensus 19 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~----------------~~~~~-~~~~~~~ 80 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQK----------------ALELD-PNNAEAW 80 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------HHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHH----------------HHHhC-CccHHHH
Confidence 348899999999999987763 34677788888888666666555555544 43321 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+...|.+.|++++|...++++.+..
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999999999988764
No 120
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.99 E-value=0.00028 Score=46.19 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=73.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCC----
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPR---- 175 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~---- 175 (225)
..|++++|...|.+..+.. +.+...+..+...|.+.|++++|...+++..+.... ..++
T Consensus 16 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~ 78 (131)
T 1elr_A 16 KKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE----------------NREDYRQI 78 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------------STTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc----------------cchhHHHH
Confidence 3445555555555554432 336778889999999999999999999998765310 0022
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
...|..+...|...|++++|.+.|++..+.. |+......+-..
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 6678888999999999999999999998753 566555555443
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.99 E-value=0.00028 Score=59.20 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=87.6
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------hhHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------QAQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALV 83 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 83 (225)
..+..+-..+.+.|++++|.+.+++.... .+..+-. ....|++++|...|++..+.. +-+...|..+-.++.
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 102 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALE 102 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45557777888999999999988773221 1222222 338899999999999987763 335677888888886
Q ss_pred hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 045820 84 MLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKV---GRSNEAMELLNEAIERG 153 (225)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~g 153 (225)
+.|++++|.+.|++ ..+.. +-+...+..+...+.+. |++++|...+++..+.+
T Consensus 103 ~~g~~~~A~~~~~~----------------al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 103 DAGQAEAAAAAYTR----------------AHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HTTCHHHHHHHHHH----------------HHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHH----------------HHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 66666655555544 33321 22566788888888888 88888988888887654
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.97 E-value=0.00082 Score=48.87 Aligned_cols=142 Identities=9% Similarity=-0.055 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH---------------hcC----CHHHHHHHHHHHh
Q 045820 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHL---------------MVG----RVEEAYEMLMNVK 115 (225)
Q Consensus 55 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---------------~~g----~~~~a~~~~~~m~ 115 (225)
+|+..|+...+.| ++..+..+=..|...+++++|...|+..+ ..+ +.++|.++|.+..
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAV 80 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4667777776665 67778888888888999999999998771 124 7888998888887
Q ss_pred hCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc---
Q 045820 116 NDGLKPDVYTYTAIMDGFCK----VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG--- 188 (225)
Q Consensus 116 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~--- 188 (225)
+.| +...+..+-..|.. .+++++|...|++..+.|... .+...+..|-..|..
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~-----------------~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD-----------------AAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-----------------HHHHHHHHHHHHHHHTSS
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-----------------chHHHHHHHHHHHHcCCC
Confidence 654 55667777777776 788999999999888766310 015666667777776
Q ss_pred -cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 189 -VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 189 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
.++.++|..+|++..+.+ .+...+..|-..|
T Consensus 141 ~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 141 GPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMF 172 (212)
T ss_dssp SSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 778999999999988762 2333444444444
No 123
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.97 E-value=0.00048 Score=45.79 Aligned_cols=100 Identities=14% Similarity=0.000 Sum_probs=75.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 70 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
.+...|..+-..+.+.|+++ +|...|.+..+.. +.+...|..+-..|.+.|++++|...+++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~----------------~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYP----------------EAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA 69 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHH----------------HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHH----------------HHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35566777777775555554 5555555444322 235778999999999999999999999999
Q ss_pred HHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 150 IERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 150 ~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.+..- .+...|..+-.+|...|++++|...|++..+.
T Consensus 70 l~~~p-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 70 LELDG-------------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCc-------------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 87642 35678899999999999999999999998753
No 124
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.95 E-value=0.00088 Score=52.73 Aligned_cols=193 Identities=11% Similarity=-0.044 Sum_probs=101.8
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcch------------hhhHHHH-HHHHhCCHHHHHHHHHHHHhc----CCC--C-C
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRS------------LQAQRFV-DKIKASPLKERIDIFNSIKKD----GTN--W-S 71 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~~~~l~-~~~~~~~~~~a~~~~~~m~~~----g~~--~-~ 71 (225)
....+-..+...|++++|.+.+.+... .....+- .....|++++|...+++..+. +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 555555666667777777766655211 0122222 234677777777777665432 221 2 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH-----------------------HhcCCHHHHHHHHHHHhhCCCCCC--HHhH
Q 045820 72 VSDFNDLLMALVMLNEQDTAVKFFSNH-----------------------LMVGRVEEAYEMLMNVKNDGLKPD--VYTY 126 (225)
Q Consensus 72 ~~~~~~li~~~~~~~~~~~a~~~~~~~-----------------------~~~g~~~~a~~~~~~m~~~g~~p~--~~~~ 126 (225)
...+..+-..+...|++++|...+++. ...|++++|...+++.......++ ....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 334555666677777777777766543 445777777777777653211111 1111
Q ss_pred H----HHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHH--------------------HHh-hcCCCCCH-H
Q 045820 127 T----AIMDGFCKVGRSNEAMELLNEAIERGVTQN---VVTLIQLL--------------------QRL-EMGHIPRT-I 177 (225)
Q Consensus 127 ~----~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~l~--------------------~~~-~~~~~p~~-~ 177 (225)
. .....+...|++++|...+.+.......++ ...+..+. ... ..|..++. .
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 1 223346677888888777776654322111 11111111 000 11111222 2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.+..+-..+...|+.++|...+++..+
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555566677778888888887777653
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.95 E-value=0.00057 Score=46.77 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=68.2
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|...|.+..... +.+...|..+-.+|.+.|++++|...|++..+..- -+...
T Consensus 32 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------------------~~~~~ 91 (148)
T 2vgx_A 32 YQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-------------------XEPRF 91 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCTHH
T ss_pred HHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------------------CCchH
Confidence 34455566666666655432 33777888999999999999999999999987642 35678
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|..+-.+|...|++++|...|+...+.
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888999999999999999999998864
No 126
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.93 E-value=0.00043 Score=51.77 Aligned_cols=160 Identities=11% Similarity=-0.035 Sum_probs=97.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045820 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWS---VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g 118 (225)
..-...++.|++++|+..|+...+..- -+ ...+..+-.+|.+.|+++.| ...|++..+..
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A----------------~~~~~~~l~~~ 82 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLA----------------ASEYERFIQIY 82 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHH----------------HHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHH----------------HHHHHHHHHHC
Confidence 334445699999999999999987631 12 55667777777555555554 44555544421
Q ss_pred C-CC-CHHhHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCccHHHHHHH--HHHhhcCCCCCHHHHHHHHHHH
Q 045820 119 L-KP-DVYTYTAIMDGFCK--------VGRSNEAMELLNEAIERGVTQNVVTLIQL--LQRLEMGHIPRTITFNNVIQAL 186 (225)
Q Consensus 119 ~-~p-~~~~~~~ll~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~~t~~~l--~~~~~~~~~p~~~~~~~li~~~ 186 (225)
. .| ....+..+-.++.+ .|++++|...|++..+..-. +.....++ +...... ....+..+-..|
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~---~~~~~~~la~~~ 158 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAK---LARKQYEAARLY 158 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 1 12 23456677778888 99999999999999875321 00111111 0000000 011235667889
Q ss_pred HccCcHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHhh
Q 045820 187 CGVGKIHKALLLLFLMYEHGKI-P-SRTSHDMLIKKLD 222 (225)
Q Consensus 187 ~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~ll~~~~ 222 (225)
.+.|++++|...|++..+..-. | ....+..+..+|.
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999875311 1 2345555555554
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.93 E-value=0.00058 Score=52.18 Aligned_cols=134 Identities=15% Similarity=0.056 Sum_probs=93.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhhCCCC-CC----HHhHHH
Q 045820 78 LLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKNDGLK-PD----VYTYTA 128 (225)
Q Consensus 78 li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~ 128 (225)
.+..+...|+++.|..++++. ...|++++|...|.+..+.... ++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466778888998888888765 3456889999999988763222 23 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc-
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERG--VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH- 205 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 205 (225)
+-..|...|++++|...|++..+.- ...+. .....+|..+...|.+.|++++|...+++..+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNE--------------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccch--------------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 8899999999999999998887421 10000 012347889999999999999999999987642
Q ss_pred ---CCCCC-HHHHHHHHHHhhcCC
Q 045820 206 ---GKIPS-RTSHDMLIKKLDQQP 225 (225)
Q Consensus 206 ---g~~p~-~~~~~~ll~~~~~~g 225 (225)
+..+. ..+|..+-.+|.+.|
T Consensus 227 ~~~~~~~~~~~~~~~lg~~~~~~g 250 (293)
T 3u3w_A 227 CRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhC
Confidence 33333 456666666655443
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.93 E-value=0.0007 Score=51.70 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=95.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHhhCC---CCCC--HH
Q 045820 74 DFNDLLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVKNDG---LKPD--VY 124 (225)
Q Consensus 74 ~~~~li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~~~g---~~p~--~~ 124 (225)
.+...+..+...|++++|.+.+.+. ...|++++|...|.+..+.. ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445667778888888888877543 45679999999998876421 1122 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
+|+.+-..|...|++++|...+++..+.. ..|+.. .....+|..+...|.+.|++++|...+++..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~-------------~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE-------------EFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc-------------cchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 78899999999999999999999887321 110000 0123588899999999999999999999886
Q ss_pred hc----CCCCC-HHHHHHHHHHhhcCC
Q 045820 204 EH----GKIPS-RTSHDMLIKKLDQQP 225 (225)
Q Consensus 204 ~~----g~~p~-~~~~~~ll~~~~~~g 225 (225)
+. +.... ..+|..+-..|.+.|
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g 250 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 43 21111 456666666665543
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.92 E-value=0.00023 Score=48.19 Aligned_cols=87 Identities=8% Similarity=0.014 Sum_probs=69.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|...|.+..... +.+...|..+-.+|.+.|++++|...|++..+..- -+...
T Consensus 29 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~ 88 (142)
T 2xcb_A 29 YQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-------------------NEPRF 88 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCTHH
T ss_pred HHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------------------CCcHH
Confidence 34566666666776665532 23677888999999999999999999999988642 45677
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|..+-.+|...|++++|...|+...+.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888899999999999999999998764
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.91 E-value=0.00079 Score=48.42 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=71.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|...|.+.. .|+...|..+-..|.+.|++++|...+++..+..- .+...
T Consensus 17 ~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-------------------~~~~~ 73 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-------------------HLAVA 73 (213)
T ss_dssp HHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHH
T ss_pred HHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------------------cchHH
Confidence 45677778887777663 56888999999999999999999999999887642 46678
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|..+-.+|...|++++|...|++..+.
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 999999999999999999999999874
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00049 Score=45.28 Aligned_cols=87 Identities=17% Similarity=0.084 Sum_probs=70.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
...|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...+++..+..- -+...
T Consensus 15 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~ 74 (126)
T 3upv_A 15 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-------------------NFVRA 74 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------------CcHHH
Confidence 44566666666666665532 23678899999999999999999999999987642 35778
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|..+-.++...|++++|...|++..+.
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 889999999999999999999998764
No 132
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.91 E-value=0.0002 Score=55.23 Aligned_cols=91 Identities=12% Similarity=-0.001 Sum_probs=58.9
Q ss_pred HhcCCHHHHHHHHHHHhh----CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCC
Q 045820 99 LMVGRVEEAYEMLMNVKN----DGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 173 (225)
...|++++|...|++..+ .|-.. -..+++.+-..|.+ |++++|...|++..+.... .+..
T Consensus 87 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~--------------~~~~ 151 (307)
T 2ifu_A 87 KDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN--------------EERL 151 (307)
T ss_dssp HHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH--------------TTCH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh--------------CCCh
Confidence 345777777777766432 12111 13456667777766 8888888777776543110 0000
Q ss_pred -CCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 174 -PRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 174 -p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
....+++.+-..|.+.|++++|+..|++..+
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1145788889999999999999999999876
No 133
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.90 E-value=0.00017 Score=52.93 Aligned_cols=140 Identities=8% Similarity=-0.012 Sum_probs=96.0
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchh----h-----hHHHH-HHHHhCCHHHHHHHHHHHHhcCCC-CCh-hhHHHHH
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSL----Q-----AQRFV-DKIKASPLKERIDIFNSIKKDGTN-WSV-SDFNDLL 79 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-----~~~l~-~~~~~~~~~~a~~~~~~m~~~g~~-~~~-~~~~~li 79 (225)
....+...+.+.|++++|+..+.+.... . +..+. ...+.|++++|+..|++..+..-. +.. ..+-.+-
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 3444556677889999999888774321 1 11111 233889999999999888765321 111 1233333
Q ss_pred HHHHh------------------cCCHHHHHHHHHHH-----------------------------------HhcCCHHH
Q 045820 80 MALVM------------------LNEQDTAVKFFSNH-----------------------------------LMVGRVEE 106 (225)
Q Consensus 80 ~~~~~------------------~~~~~~a~~~~~~~-----------------------------------~~~g~~~~ 106 (225)
.++.+ .|+.++|...|+.+ .+.|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 33332 56788888888766 35689999
Q ss_pred HHHHHHHHhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 107 AYEMLMNVKNDGLKPD----VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 107 a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
|...|+++.+. .|+ ...+..+..+|.+.|+.++|...++.+...+
T Consensus 166 A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 166 VVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 99999998864 233 2568889999999999999999999988765
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.89 E-value=0.0011 Score=45.82 Aligned_cols=86 Identities=9% Similarity=-0.030 Sum_probs=67.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
..|++++|...|++..+.. +-+...|..+-.+|.+.|++++|...|++..+..- -+...|
T Consensus 23 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~ 82 (164)
T 3sz7_A 23 ARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-------------------KYSKAW 82 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------------CCHHHH
Confidence 4445555555555554421 23677899999999999999999999999987642 357788
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..+-.+|...|++++|...|++..+.
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999998864
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.88 E-value=0.00092 Score=43.52 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=66.7
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|++..+.. +.+...|..+...+...|++++|...++ +..+.. +.+...+
T Consensus 22 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~----------------~~~~~~-~~~~~~~ 83 (131)
T 2vyi_A 22 QMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCE----------------RAICID-PAYSKAY 83 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH----------------HHHHHC-TTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHH----------------HHHhcC-ccCHHHH
Confidence 348899999999999887663 3367778888888866666655555544 443321 2357788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+...|.+.|++++|...|++..+..
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 889999999999999999999988764
No 136
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.003 Score=50.60 Aligned_cols=147 Identities=7% Similarity=0.012 Sum_probs=104.6
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCC----------------hhhHHHHHHHHHhcCCHHHHHHHHHHH----------
Q 045820 45 VDKIKASPLKERIDIFNSIKKDGTNWS----------------VSDFNDLLMALVMLNEQDTAVKFFSNH---------- 98 (225)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~~---------- 98 (225)
-...+.|++++|++.|....+..-..+ ...+..+...|.+.|++++|.+.+...
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345678888888888887765422111 123667888888888888888877655
Q ss_pred --------------HhcCCHHHHHHHHHHHhh----CCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 045820 99 --------------LMVGRVEEAYEMLMNVKN----DGLKPD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVV 159 (225)
Q Consensus 99 --------------~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 159 (225)
...|+.+.|..++.+... .+..+. ..++..+...|...|++++|..++.+....-...+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-- 169 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD-- 169 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS--
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc--
Confidence 235778888888777543 333333 45788899999999999999999998765321100
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 160 TLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 160 t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.......+|..++..|...|++++|..+++....
T Consensus 170 -----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 170 -----------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp -----------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 0012356889999999999999999999988764
No 137
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.84 E-value=0.00015 Score=59.95 Aligned_cols=131 Identities=9% Similarity=0.008 Sum_probs=96.7
Q ss_pred HhCCHHHHHHHHHHHHhc---CC---CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 49 KASPLKERIDIFNSIKKD---GT---NW-SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~---g~---~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
..|++++|..++++..+. -+ .| ...+++.|..+|...|++++|..++++ |++++.+..... .|
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~---------aL~i~~~~lG~~-Hp 390 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR---------MVDGYMKLYHHN-NA 390 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---------HHHHHHHHSCTT-CH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH---------HHHHHHHHcCCC-CH
Confidence 679999999999876432 11 22 356799999999999999999887764 466666555332 35
Q ss_pred CH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCccHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHccCcHHHHH
Q 045820 122 DV-YTYTAIMDGFCKVGRSNEAMELLNEAIER---GVTQNVVTLIQLLQRLEMGHIPR-TITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 122 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~l~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~ 196 (225)
++ .+++.+-..|...|++++|+.++++..+. -+.|+ +|+ ..+.+.+-.++...+.+++|+
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~---------------Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS---------------HPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 56999999999999999999999887542 11111 233 345566778888899999999
Q ss_pred HHHHHHHh
Q 045820 197 LLLFLMYE 204 (225)
Q Consensus 197 ~~~~~m~~ 204 (225)
.+++.+++
T Consensus 456 ~~~~~~~~ 463 (490)
T 3n71_A 456 FMYHKMRE 463 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999976
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.80 E-value=0.0015 Score=42.82 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=66.2
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|++..+.. +.+...|..+-..+...|++++|.. .|++..+.. +.+...+
T Consensus 26 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~----------------~~~~a~~~~-~~~~~~~ 87 (133)
T 2lni_A 26 CFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALK----------------DCEECIQLE-PTFIKGY 87 (133)
T ss_dssp HHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHH----------------HHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHH----------------HHHHHHHhC-CCchHHH
Confidence 448999999999999987663 3367778888888855555555544 444444321 2367788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-..|.+.|++++|...|++..+..
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 899999999999999999999988753
No 139
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.79 E-value=0.00022 Score=48.99 Aligned_cols=102 Identities=9% Similarity=-0.102 Sum_probs=80.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
..|++++|...+...... .| +...+-.+-..|.+.|++++|...|++..+..- -+...
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-------------------~~~~a 67 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-------------------RDPKA 67 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCHHH
Confidence 346778888887776542 34 344566788899999999999999999988642 46788
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhcC
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHGKIP-SRTSHDMLIKKLDQQ 224 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 224 (225)
|..+-.+|.+.|++++|...|++..+. .| +...|..+-..|.+.
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999874 34 466777777766654
No 140
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.79 E-value=0.0008 Score=48.72 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=58.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCC
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKI 208 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 208 (225)
+-.+|.+.|++++|...|++..+..- -+...|..+-..|...|++++|...|++..+.. +
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P 119 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-------------------NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-A 119 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 88899999999999999999988642 367788889999999999999999999998743 2
Q ss_pred CCHHHHHHHHHHh
Q 045820 209 PSRTSHDMLIKKL 221 (225)
Q Consensus 209 p~~~~~~~ll~~~ 221 (225)
-+...+..+-..|
T Consensus 120 ~~~~a~~~lg~~~ 132 (208)
T 3urz_A 120 DNLAANIFLGNYY 132 (208)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 2455565555444
No 141
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.78 E-value=0.00084 Score=44.05 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=67.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC-H---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPD-V---YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIP 174 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p 174 (225)
...|++++|...|++..+.. |+ . ..+..+-.+|.+.|++++|...|++..+..-. . ..
T Consensus 13 ~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~--------------~~ 74 (129)
T 2xev_A 13 LKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT--H--------------DK 74 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--S--------------TT
T ss_pred HHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC--C--------------cc
Confidence 34577777777777776532 32 2 46777888999999999999999999876421 0 00
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 175 RTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
....+..+..+|...|++++|...|++..+.
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0566778889999999999999999999875
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.78 E-value=0.0012 Score=45.26 Aligned_cols=120 Identities=6% Similarity=-0.090 Sum_probs=78.1
Q ss_pred hHhhhcCCCCCChhhcchhhcCcchhh------hHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 14 VLLVDSPSRSPSAAESLDLKENPRSLQ------AQRFVD-KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~l~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
..+...+...|++++|...+.+..... +..+.. ....|++++|...|++..+.. +.+...|..+-.++...|
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 355667888999999998887632221 112222 338899999999999887763 335677877777886666
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 87 EQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY--TAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 87 ~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
++++|... |++..+.. +.+...+ -.....+.+.|++++|...+.+...
T Consensus 96 ~~~~A~~~----------------~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 96 KFRAALRD----------------YETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp CHHHHHHH----------------HHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH----------------HHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 55555544 44444321 1233344 3344447788999999999887653
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.76 E-value=0.00035 Score=46.07 Aligned_cols=86 Identities=14% Similarity=0.020 Sum_probs=69.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
.+.|++++|...|++..+. .| +...|..+-.++.+.|++++|...|++..+..- -+..
T Consensus 28 ~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-------------------~~~~ 86 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-------------------KDIA 86 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHH
T ss_pred HHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCHH
Confidence 3456667777777776653 34 677888999999999999999999999988642 3567
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.|..+..+|...|++++|...+++..+.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888999999999999999999998763
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.76 E-value=0.00047 Score=45.83 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=72.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHhhcCCCCC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV--TQNVVTLIQLLQRLEMGHIPR 175 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~l~~~~~~~~~p~ 175 (225)
.+.|++++|...|++..+. .| +...|+.+-.+|.+.|++++|...+++..+..- .++.. --
T Consensus 19 ~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------------~~ 82 (127)
T 4gcn_A 19 YKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK--------------LI 82 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------------HH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH--------------HH
Confidence 4556666677777666553 34 677899999999999999999999999876421 10000 00
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 176 TITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
..+|..+-.++...|++++|++.|++..+. .||..+...|
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 246777778889999999999999998764 4676665544
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.76 E-value=0.00075 Score=45.59 Aligned_cols=88 Identities=11% Similarity=-0.013 Sum_probs=65.8
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
.++.|++++|...|+...+.. +-+...|..+-.++.+.|+++. |...|++..+.. +-+...|
T Consensus 28 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~----------------A~~~~~~al~~~-p~~~~~~ 89 (142)
T 2xcb_A 28 QYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQ----------------ALQSYSYGALMD-INEPRFP 89 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH----------------HHHHHHHHHHHC-TTCTHHH
T ss_pred HHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHH----------------HHHHHHHHHhcC-CCCcHHH
Confidence 458999999999999988763 3367778888888866555555 455555444422 2356678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..+-.+|...|++++|...|++..+.
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88899999999999999999998765
No 146
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.74 E-value=0.002 Score=42.68 Aligned_cols=89 Identities=11% Similarity=0.048 Sum_probs=68.6
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
.++.|++++|+..|++..+.. +-+...|..+-.+|.+.|++++|...|+ +..+.. +.+...|
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~----------------~al~~~-p~~~~a~ 84 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCD----------------TCIRLD-SKFIKGY 84 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH----------------HHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHH----------------HHHHhh-hhhhHHH
Confidence 458999999999999987763 4477888888888866666655555444 443321 3367789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-.+|.+.|++++|...|++..+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999988753
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.72 E-value=0.0011 Score=45.27 Aligned_cols=88 Identities=13% Similarity=0.015 Sum_probs=66.0
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
..+.|++++|...|+...+.. +.+...|..+-.+|...|++++| ...|++..... +-+...|
T Consensus 31 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A----------------~~~~~~al~l~-p~~~~~~ 92 (148)
T 2vgx_A 31 QYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLA----------------IHSYSYGAVMD-IXEPRFP 92 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH----------------HHHHHHHHHHS-TTCTHHH
T ss_pred HHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHH----------------HHHHHHHHhcC-CCCchHH
Confidence 458999999999999987763 33777788888888665555554 44554444321 2356778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
..+-.+|...|++++|...|++..+.
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999999998764
No 148
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.70 E-value=0.00082 Score=45.48 Aligned_cols=131 Identities=9% Similarity=0.094 Sum_probs=88.5
Q ss_pred HHhCCHHHHHHHHHHHHhcCC---CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-
Q 045820 48 IKASPLKERIDIFNSIKKDGT---NW--SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP- 121 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~g~---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p- 121 (225)
...|++++|...+++..+..- .+ -..++..+-..+...|++++|...+++. .+++... +-.+
T Consensus 20 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------~~~~~~~---~~~~~ 87 (164)
T 3ro3_A 20 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT---------LLLARQL---KDRAV 87 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHHHHHT---TCHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH---------HHHHHHh---CCcHH
Confidence 378999999999987654311 11 1146777777787777777777766543 2222221 1112
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-QNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
....+..+-..+...|++++|...+++..+.... .+. ......+..+...|...|++++|.+.++
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR--------------IGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch--------------HhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 2456788889999999999999999887653211 000 0123567788889999999999999999
Q ss_pred HHHh
Q 045820 201 LMYE 204 (225)
Q Consensus 201 ~m~~ 204 (225)
+..+
T Consensus 154 ~a~~ 157 (164)
T 3ro3_A 154 KHLE 157 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.68 E-value=0.00051 Score=48.90 Aligned_cols=130 Identities=7% Similarity=-0.096 Sum_probs=84.3
Q ss_pred chhhHhhhcCCCCCChhhcchhhcCcchh------h------hHHHHH-HHHhCCHHHHHHHHHHHHhc----CCCC--C
Q 045820 11 PFSVLLVDSPSRSPSAAESLDLKENPRSL------Q------AQRFVD-KIKASPLKERIDIFNSIKKD----GTNW--S 71 (225)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~------~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~~~--~ 71 (225)
..+..+-..+...|++++|+..+.+.... . +..+-. ....|++++|...+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 34446677788899999999888774331 1 111111 23889999999999876543 2122 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 72 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
...+..+-..+...|++++|...+++. .++.. ..+... -..++..+-..+.+.|++++|...+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~a---------l~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKS---------LVYAQ---QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH---------HHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH---------HHHHH---hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345677777787777777777766543 22221 222111 23457888889999999999999998876
Q ss_pred Hc
Q 045820 151 ER 152 (225)
Q Consensus 151 ~~ 152 (225)
+.
T Consensus 175 ~~ 176 (203)
T 3gw4_A 175 DI 176 (203)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 150
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.62 E-value=0.001 Score=57.15 Aligned_cols=154 Identities=13% Similarity=0.088 Sum_probs=92.0
Q ss_pred HhCCHHHHHHHHHHHHhcC---------CCCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHH---------
Q 045820 49 KASPLKERIDIFNSIKKDG---------TNWS------------VSDFNDLLMALVMLNEQDTAVKFFSNH--------- 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g---------~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~~--------- 98 (225)
+.|++++|..+|+...+.. ..|+ ..+|...+....+.|+.+.|..+|...
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~ 469 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP 469 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh
Confidence 5677777777777665431 0121 235666666666666666666666554
Q ss_pred ----------Hh-cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 045820 99 ----------LM-VGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQR 167 (225)
Q Consensus 99 ----------~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~ 167 (225)
.+ .++.+.|.++|+...+. .+-+...|...+.-....|+.+.|..+|++..+....+
T Consensus 470 ~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~----------- 537 (679)
T 4e6h_A 470 DIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS----------- 537 (679)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST-----------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH-----------
Confidence 11 13356666666665543 22244445555665566666666666666655433210
Q ss_pred hhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 168 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
.-....|...+.--.+.|+.+.+.++.+.+.+. .|+......+++-|
T Consensus 538 -----~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 538 -----HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp -----THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 013467888888888899999999999999875 35555555555544
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.61 E-value=0.0018 Score=50.61 Aligned_cols=80 Identities=13% Similarity=-0.012 Sum_probs=65.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
...|..+-.+|.+.|++++|...+++..+..- .+...|..+-.+|...|++++|...|++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDS-------------------NNEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 57899999999999999999999999988642 46788999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHhh
Q 045820 203 YEHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 203 ~~~g~~p~~~~~~~ll~~~~ 222 (225)
.+.. +-+...+..+-.++.
T Consensus 257 l~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 257 LQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHC-SSCHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHH
Confidence 8742 224455655555544
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.52 E-value=0.0031 Score=44.99 Aligned_cols=78 Identities=8% Similarity=-0.055 Sum_probs=61.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
..|..+-.+|.+.|++++|...+++..+..- .+...|..+-.+|...|++++|...|++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-------------------NNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6788889999999999999999999987632 467788889999999999999999999988
Q ss_pred hcCCCCCHHHHHHHHHHh
Q 045820 204 EHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 204 ~~g~~p~~~~~~~ll~~~ 221 (225)
+.. +-+...+..+-.++
T Consensus 150 ~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 150 SLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHS-TTCHHHHHHHHHHH
T ss_pred HHC-CCcHHHHHHHHHHH
Confidence 642 12344555544443
No 153
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.49 E-value=0.00085 Score=55.27 Aligned_cols=115 Identities=9% Similarity=-0.022 Sum_probs=79.2
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTA 128 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 128 (225)
+.|++++|...|++..+.. +-+..+|..+-.+|.+.|++++|... +++..+.. +-+..+|..
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~----------------~~~al~l~-p~~~~~~~~ 79 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGD----------------ATRAIELD-KKYIKGYYR 79 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH----------------HHHHHHSC-TTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHH----------------HHHHHHhC-CCCHHHHHH
Confidence 5788999999998887662 33577888888888666665555554 44444431 236778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH--HHccCcHHHHHHHHH
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA--LCGVGKIHKALLLLF 200 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 200 (225)
+-.+|.+.|++++|...|++..+..- -+...+..+-.+ +.+.|++++|.+.++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p-------------------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKP-------------------HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-------------------TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999887532 123344444444 777899999998887
No 154
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.48 E-value=0.011 Score=40.55 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---------CC-CHHhHHHHHHHHHhcCCHHHH
Q 045820 73 SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL---------KP-DVYTYTAIMDGFCKVGRSNEA 142 (225)
Q Consensus 73 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~---------~p-~~~~~~~ll~~~~~~g~~~~a 142 (225)
..+...-..+.+.|+++.|...|... +.++.......- .| +...|..+-.+|.+.|++++|
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~a---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A 82 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDA---------LTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEA 82 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH---------HHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH---------HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34555556666667776666665543 222222211111 12 346788899999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHH
Q 045820 143 MELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRT 212 (225)
Q Consensus 143 ~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 212 (225)
...+++..+..- .+...|..+-.+|...|++++|...|+...+. .|+..
T Consensus 83 ~~~~~~al~~~p-------------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 83 EETSSEVLKREE-------------------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHST-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHhcCC-------------------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 999999988642 46778999999999999999999999998874 46544
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0045 Score=40.47 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=67.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
.++.|++++|+..|++..+.. +.+...|..+-.++.+.|++++|...| ++..+.. +-+...|
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~----------------~~al~~~-p~~~~~~ 75 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC----------------NKAIEKD-PNFVRAY 75 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHC-TTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHH----------------HHHHHhC-CCcHHHH
Confidence 458999999999999887763 336778888888886666665555544 4444321 2357788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-.++...|++++|...|++..+..
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 999999999999999999999987653
No 156
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.45 E-value=0.0037 Score=47.66 Aligned_cols=55 Identities=13% Similarity=-0.035 Sum_probs=40.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPD--VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
...|++++|+..|++.......|. .......-.++.+.|+.++|..+|+++....
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 566777888888887764333253 3355666778899999999999999999864
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.45 E-value=0.0029 Score=41.10 Aligned_cols=92 Identities=9% Similarity=0.196 Sum_probs=68.1
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD---- 122 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~---- 122 (225)
....|++++|...|++..+.. +.+...|..+-..+...|+++.|...++.... +. ... .++
T Consensus 14 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---------~~---~~~--~~~~~~~ 78 (131)
T 1elr_A 14 AYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE---------VG---REN--REDYRQI 78 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------HH---HHS--TTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh---------hc---ccc--chhHHHH
Confidence 348899999999999987763 44677788888888777777777666655411 10 110 122
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+|..+...|.+.|++++|...|++..+..
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 6678888999999999999999999998854
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.44 E-value=0.0057 Score=39.90 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=63.5
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 45 VDKIKASPLKERIDIFNSIKKDGTNWSV---SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
...+..|++++|...|+...+..-. +. ..+..+-.++.+.|++ ++|...|++..+. .|
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~----------------~~A~~~~~~~~~~--~p 70 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNF----------------QLAEAQFRDLVSR--YP 70 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHHH--CT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccH----------------HHHHHHHHHHHHH--CC
Confidence 3456899999999999998876321 22 3566666677555555 5555555555442 23
Q ss_pred C----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 122 D----VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 122 ~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
+ ...+..+-.+|.+.|++++|...|++..+..
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2 5567788889999999999999999998754
No 159
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.39 E-value=0.0036 Score=38.03 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=66.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+...|..+-..+.+.|++++|...+++..+..- .+...|..+-..|.+.|++++|...+++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------------------NNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------------------CCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456788888899999999999999999887642 3567888889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 202 MYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 202 m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..+.. +-+...+..+-..+.+.|
T Consensus 69 a~~~~-p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 69 ALELD-PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHC
T ss_pred HHhcC-CCCHHHHHHHHHHHHhcC
Confidence 98753 235666776666665544
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.38 E-value=0.0011 Score=46.41 Aligned_cols=105 Identities=6% Similarity=-0.022 Sum_probs=76.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
..|++++|...+.+..+.. +.+...|..+-..|...|++++|...|++..+..- .+...|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~ 81 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-------------------ENAELY 81 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-------------------SCHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------CCHHHH
Confidence 4567777777877766532 34678899999999999999999999999887542 356677
Q ss_pred HHHHHH-HHccCcH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 180 NNVIQA-LCGVGKI--HKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 180 ~~li~~-~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..+... |...|++ ++|...+++..+.. +-+...+..+-..|.+.|
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 129 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQA 129 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcc
Confidence 777777 7788998 99999999998753 224566766766666544
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.37 E-value=0.0051 Score=50.26 Aligned_cols=120 Identities=10% Similarity=-0.042 Sum_probs=82.6
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWS--------------VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLM 112 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~ 112 (225)
+++.|++++|+..|++..+..-.-. ...|..+-.+|.+.|+++ +|...|+
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~----------------~A~~~~~ 341 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT----------------KAVECCD 341 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH----------------HHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHH----------------HHHHHHH
Confidence 3489999999999998876421111 466777777775555554 5555555
Q ss_pred HHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcH
Q 045820 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKI 192 (225)
Q Consensus 113 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~ 192 (225)
+..+.. +-+...|..+-.+|.+.|++++|...|++..+..- -+...+..+-..+.+.++.
T Consensus 342 ~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-------------------~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 342 KALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-------------------QNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------------------CHHHHHHHHHHHHHHH
T ss_pred HHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHHHH
Confidence 544421 23677899999999999999999999999887532 3456777788888888888
Q ss_pred HHHH-HHHHHH
Q 045820 193 HKAL-LLLFLM 202 (225)
Q Consensus 193 ~~a~-~~~~~m 202 (225)
+++. .+++.|
T Consensus 402 ~~a~~~~~~~~ 412 (457)
T 1kt0_A 402 NERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 7765 345544
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.37 E-value=0.0072 Score=41.57 Aligned_cols=89 Identities=9% Similarity=-0.004 Sum_probs=67.3
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
.++.|++++|+..|++..+.. +-+...|..+-.+|.+.|++++|...| ++..+.. +-+...|
T Consensus 21 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~----------------~~al~~~-p~~~~~~ 82 (164)
T 3sz7_A 21 AMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDA----------------ELATVVD-PKYSKAW 82 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHH----------------HHHHHhC-CCCHHHH
Confidence 448999999999999987763 336777888888886666655555544 4444321 2357789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+-.+|.+.|++++|...|++..+..
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999988653
No 163
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.35 E-value=0.0064 Score=46.34 Aligned_cols=120 Identities=13% Similarity=-0.040 Sum_probs=79.5
Q ss_pred HHHHHhcCCHHHHHHHHHHH-----------------HhcCCHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHHhcCCH
Q 045820 79 LMALVMLNEQDTAVKFFSNH-----------------LMVGRVEEAYEMLMNVKNDGLKPD--VYTYTAIMDGFCKVGRS 139 (225)
Q Consensus 79 i~~~~~~~~~~~a~~~~~~~-----------------~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~ 139 (225)
..++...|++++|.++|+.+ .+.+++++|+..|....... .|. ...+..+-.++.+.|++
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCH
Confidence 34444555555555555333 56788888888887554321 111 23567778899999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 045820 140 NEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDML 217 (225)
Q Consensus 140 ~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 217 (225)
++|+..|++.......|.. ........-.++.+.|+.++|..+|+++... .|+...+..|
T Consensus 188 ~eAl~~l~~a~~g~~~P~~----------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEAC----------------ARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTT----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccc----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 9999999988754332210 2345566677888999999999999999975 3554444433
No 164
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.35 E-value=0.00065 Score=44.22 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=58.6
Q ss_pred hCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHH
Q 045820 50 ASPLKERIDIFNSIKKDGT--NWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYT 127 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 127 (225)
.|++++|+..|++..+.+. +-+...|..+-..|.+.|++ ++|...|++..+.. +-+...+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~----------------~~A~~~~~~al~~~-p~~~~~~~ 65 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY----------------RKAEAVLANGVKQF-PNHQALRV 65 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH----------------HHHHHHHHHHHHhC-CCchHHHH
Confidence 5778889999988887641 22455677777777555555 55555555554432 22567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.+-.++.+.|++++|...+++..+.
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999999999998765
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.35 E-value=0.0021 Score=43.40 Aligned_cols=129 Identities=9% Similarity=0.056 Sum_probs=84.5
Q ss_pred hhhHhhhcCCCCCChhhcchhhcCcchhh------------hHHHHH-HHHhCCHHHHHHHHHHHHhc----CCCC-Chh
Q 045820 12 FSVLLVDSPSRSPSAAESLDLKENPRSLQ------------AQRFVD-KIKASPLKERIDIFNSIKKD----GTNW-SVS 73 (225)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~l~~-~~~~~~~~~a~~~~~~m~~~----g~~~-~~~ 73 (225)
.+..+-..+...|++++|+..+.+..... +..+.. ....|++++|...+++..+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34466667788999999998887743221 111111 23889999999999886543 1111 144
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 74 DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 74 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.+..+-..+...|++++|...+++. .++.. +.+..+ ...++..+-..|...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a---------~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH---------LAIAQ---ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------HHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH---------HHHHH---HccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777777777777777766543 22222 122122 2456888899999999999999999987653
No 166
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.34 E-value=0.0059 Score=46.39 Aligned_cols=84 Identities=15% Similarity=0.055 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTIT 178 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~ 178 (225)
..|++++|...|++..+. .| +...|..+-.+|.+.|++++|...+++..+..- -+...
T Consensus 16 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~ 74 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------------------QSVKA 74 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-------------------TCHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------------CCHHH
Confidence 334445555555544432 33 566777777888888888888888887776431 34567
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
|..+-.+|...|++++|...|++..+
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777788888888888888877654
No 167
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.32 E-value=0.0054 Score=39.43 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045820 106 EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA 185 (225)
Q Consensus 106 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~ 185 (225)
.|...|++..+.. +-+...|..+-..|.+.|++++|...|++..+..- .+...|..+-.+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~~la~~ 62 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-------------------TYSVAWKWLGKT 62 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-------------------CcHHHHHHHHHH
Confidence 4566677766532 23677899999999999999999999999887642 356788889999
Q ss_pred HHccCcHHHHHHHHHHHHhc
Q 045820 186 LCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 186 ~~~~g~~~~a~~~~~~m~~~ 205 (225)
|...|++++|...|++..+.
T Consensus 63 ~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 63 LQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998753
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.31 E-value=0.0043 Score=41.05 Aligned_cols=93 Identities=9% Similarity=0.059 Sum_probs=66.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-CHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLK-P-DVY 124 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~ 124 (225)
..+.|++++|+..|++..+.. +-+...|+.+-.+|.+.|++++|.+.|+.. +++-. +.... + -..
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a---------l~~~~---~~~~~~~~~a~ 84 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA---------VEVGR---ETRADYKLIAK 84 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHHHH---HTTCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH---------HHhCc---ccchhhHHHHH
Confidence 448999999999999887763 336777888999998888877777766543 11111 11000 0 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
+|..+-.++...|++++|...|++..+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6777888899999999999999998764
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.30 E-value=0.0045 Score=40.59 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=67.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-C
Q 045820 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-D 122 (225)
Q Consensus 44 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~ 122 (225)
-...++.|++++|+..|++..+.. +-+...|..+-.++.+.|++ ++|...|++..+. .| +
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~----------------~~A~~~~~~al~l--~P~~ 84 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKD----------------GLAIIALNHARML--DPKD 84 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH----------------HHHHHHHHHHHHh--CCCC
Confidence 344568999999999999988763 33677788787888555555 5555555555442 34 6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
...+..+-.+|.+.|++++|...+++..+.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678889999999999999999999998754
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.29 E-value=0.005 Score=38.74 Aligned_cols=83 Identities=12% Similarity=0.009 Sum_probs=67.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+...|..+-..+.+.|++++|...+++..+..- .+...|..+...+...|++++|...+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 65 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-------------------EESKYWLMKGKALYNLERYEEAVDCYNY 65 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-------------------CCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 455677888899999999999999999987642 4567888899999999999999999999
Q ss_pred HHhcCCCC--CHHHHHHHHHHhhcC
Q 045820 202 MYEHGKIP--SRTSHDMLIKKLDQQ 224 (225)
Q Consensus 202 m~~~g~~p--~~~~~~~ll~~~~~~ 224 (225)
..+.. .. +...+..+...|.+.
T Consensus 66 a~~~~-~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 66 VINVI-EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred HHHhC-cccchHHHHHHHHHHHHHH
Confidence 98753 22 477777777777665
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.018 Score=38.19 Aligned_cols=88 Identities=13% Similarity=0.059 Sum_probs=65.6
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWS----VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 122 (225)
....|++++|...|++..+. .|+ ...|..+-..|...|++++|...+ ++..+.. +.+
T Consensus 38 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~----------------~~~~~~~-~~~ 98 (148)
T 2dba_A 38 LFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEA----------------SKAIEKD-GGD 98 (148)
T ss_dssp HHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHT-SCC
T ss_pred HHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHH----------------HHHHhhC-ccC
Confidence 45889999999999998876 455 566777777776666555555544 4443321 235
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
...|..+-.+|.+.|++++|...|++..+..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6788888999999999999999999988754
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.24 E-value=0.0059 Score=50.21 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=72.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
.+.|++++|.+.|++..+. .| +..+|+.+-.+|.+.|++++|...+++..+..- -+..
T Consensus 17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------------------~~~~ 75 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------------------KYIK 75 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-------------------TCHH
T ss_pred HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------------CCHH
Confidence 3567788888888877653 34 578899999999999999999999999988642 4567
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 178 TFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 178 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
.|..+-.+|...|++++|.+.+++..+.
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999874
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.24 E-value=0.0093 Score=39.29 Aligned_cols=85 Identities=15% Similarity=0.008 Sum_probs=69.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
.+...|..+-..+.+.|++++|...|.+..+..- .+...|..+..+|...|++++|...++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-------------------LVAVYYTNRALCYLKMQQPEQALADCR 67 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-------------------CcHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4677889999999999999999999999887642 457789999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 201 LMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 201 ~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
...+.. +-+...+..+-.+|.+.|
T Consensus 68 ~al~~~-p~~~~~~~~l~~~~~~~~ 91 (137)
T 3q49_B 68 RALELD-GQSVKAHFFLGQCQLEME 91 (137)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHhC-chhHHHHHHHHHHHHHHh
Confidence 998753 235667777777766544
No 174
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.23 E-value=0.028 Score=48.34 Aligned_cols=150 Identities=11% Similarity=-0.007 Sum_probs=90.7
Q ss_pred HhCCHHHHH-HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC------
Q 045820 49 KASPLKERI-DIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP------ 121 (225)
Q Consensus 49 ~~~~~~~a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p------ 121 (225)
+.|+.++|. .+|++-... ++.+...|-..+...-+.|+++.|.++|+...... ..-++.... +. |
T Consensus 355 ~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l-----~~~~~~~~~-~~-p~~~~~~ 426 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI-----HLDLAALME-DD-PTNESAI 426 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHHHHHHH-HS-TTCHHHH
T ss_pred hcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----HHHhhhhhh-cc-Ccchhhh
Confidence 667778886 888877654 34566667777888877888888887776652210 000000010 01 2
Q ss_pred ------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCccHHHHHHHHHHh------------hcC---CCCCHHH
Q 045820 122 ------DVYTYTAIMDGFCKVGRSNEAMELLNEAIER-G-VTQNVVTLIQLLQRL------------EMG---HIPRTIT 178 (225)
Q Consensus 122 ------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g-~~p~~~t~~~l~~~~------------~~~---~~p~~~~ 178 (225)
....|-..+....+.|..+.|..+|.+..+. + ..+......+.++.. +.+ +.-+...
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~ 506 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHH
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHH
Confidence 1235777777777777888888888887765 2 223333333333211 111 1234556
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 179 FNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 179 ~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
|...+.-....|+.+.|..+|+......
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 6777777777899999999999988754
No 175
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.23 E-value=0.015 Score=36.77 Aligned_cols=89 Identities=9% Similarity=0.021 Sum_probs=66.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTY 126 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 126 (225)
....|++++|...|+...+.. +.+...|..+-..+.+.|++++|...++ +..+.. +.+...+
T Consensus 14 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~----------------~~~~~~-~~~~~~~ 75 (118)
T 1elw_A 14 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGC----------------KTVDLK-PDWGKGY 75 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH----------------HHHHHC-TTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHH----------------HHHHhC-cccHHHH
Confidence 448899999999999987763 3366777878888866666655555544 443321 2357788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 127 TAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 127 ~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..+..++.+.|++++|...+++..+..
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 889999999999999999999988754
No 176
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0047 Score=39.04 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=46.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+...|..+-..+.+.|++++|...|++..+..- .+...|..+-.+|.+.|++++|...+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 63 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-------------------QNPVGYSNKAMALIKLGEYTQAIQMCQQ 63 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 445666677777778888888888877776532 3556677777777788888888888877
Q ss_pred HHhc
Q 045820 202 MYEH 205 (225)
Q Consensus 202 m~~~ 205 (225)
..+.
T Consensus 64 al~~ 67 (111)
T 2l6j_A 64 GLRY 67 (111)
T ss_dssp HHTS
T ss_pred HHHh
Confidence 7753
No 177
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.22 E-value=0.021 Score=38.34 Aligned_cols=135 Identities=15% Similarity=0.123 Sum_probs=110.4
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCHHHHHHHHHHHhhCCCC
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH------LMVGRVEEAYEMLMNVKNDGLK 120 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------~~~g~~~~a~~~~~~m~~~g~~ 120 (225)
.+-.|.+++..++.....++. +..-||-+|--....-+=+...++++.. ..+|.+.....++-.+-
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n----- 88 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN----- 88 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-----
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc-----
Confidence 346799999999998876552 5666888888888888888888888888 67888898888887664
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLF 200 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 200 (225)
.+..-.+.-++.....|+-++-.++..++.... + |+....-.+-.+|.+.|+..+|.+++.
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~------------------~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-E------------------VSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-C------------------SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-C------------------CChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 355677888999999999999999999864422 2 777888889999999999999999999
Q ss_pred HHHhcCCC
Q 045820 201 LMYEHGKI 208 (225)
Q Consensus 201 ~m~~~g~~ 208 (225)
+..+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99999875
No 178
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.20 E-value=0.0022 Score=40.50 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=64.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+...+..+-..|.+.|++++|...|++..+..- -+...|..+-.+|...|++++|.+.+++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-------------------DYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 667888899999999999999999999987652 3566888999999999999999999998
Q ss_pred HHhc-CCCCCHHHHHHHHHHhh
Q 045820 202 MYEH-GKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 202 m~~~-g~~p~~~~~~~ll~~~~ 222 (225)
..+. .-.++.....-+...+.
T Consensus 67 al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 67 GIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHhhhhcCCchhHHHHHHHHHH
Confidence 8753 22355555555554443
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.06 E-value=0.0088 Score=41.44 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=74.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC-------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPD-------------VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
.+.|++++|...|++..+. .|+ ...|+..-.++.+.|++++|+..+++..+. ||.
T Consensus 22 ~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--------~n~-- 89 (159)
T 2hr2_A 22 LVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--------FNR-- 89 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHH--
T ss_pred HHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------hhc--
Confidence 4456777777777766542 222 238999999999999999999999998875 000
Q ss_pred HHhhcCCCC-CHHHH----HHHHHHHHccCcHHHHHHHHHHHHh-----cCCCCCHHHHHHHHH
Q 045820 166 QRLEMGHIP-RTITF----NNVIQALCGVGKIHKALLLLFLMYE-----HGKIPSRTSHDMLIK 219 (225)
Q Consensus 166 ~~~~~~~~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ll~ 219 (225)
...+.| +...| ...-.++...|++++|+..|++..+ .|+.+........+.
T Consensus 90 ---~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 90 ---RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp ---HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred ---cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 000114 34567 8888999999999999999998864 367776666555544
No 180
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.06 E-value=0.045 Score=44.56 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=74.7
Q ss_pred hhhHhhhcCCCCC---ChhhcchhhcCcchhhh------HHHHHHHHh-----CCHHHHHHHHHHHHhcCCCCChhhHHH
Q 045820 12 FSVLLVDSPSRSP---SAAESLDLKENPRSLQA------QRFVDKIKA-----SPLKERIDIFNSIKKDGTNWSVSDFND 77 (225)
Q Consensus 12 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~------~~l~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~ 77 (225)
.+..|-..|...| +.++|++.+.+.-..+. ..+-..+.. ++.++|...|+... .| +...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 3334444444566 66777766665322211 122223322 47777777777766 32 3444554
Q ss_pred HHHH-H--HhcCCHHHHHHHHHHH---------------HhcC-----CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 045820 78 LLMA-L--VMLNEQDTAVKFFSNH---------------LMVG-----RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134 (225)
Q Consensus 78 li~~-~--~~~~~~~~a~~~~~~~---------------~~~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 134 (225)
+-.. + ...++.++|...|++. ...| +.++|.++|.+.. .| +...+..+-..|.
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYR 329 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHH
Confidence 5444 2 3467777777777665 2233 6677777766555 22 4445555555554
Q ss_pred h----cCCHHHHHHHHHHHHHcCC
Q 045820 135 K----VGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 135 ~----~g~~~~a~~~~~~m~~~g~ 154 (225)
. ..+.++|...|++..+.|.
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCCCCcCHHHHHHHHHHHHhhCh
Confidence 4 3377777777777776654
No 181
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.01 E-value=0.031 Score=37.42 Aligned_cols=112 Identities=10% Similarity=-0.053 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIM 130 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 130 (225)
+++++|+..|+.-.+.| .|.. . +=..|...+.+ ++|.++|.+..+.| +...++.+-
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~----------------~~A~~~~~~Aa~~g---~~~a~~~Lg 64 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINK----------------QKLFQYLSKACELN---SGNGCRFLG 64 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCH----------------HHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCH----------------HHHHHHHHHHHcCC---CHHHHHHHH
Confidence 45788889998888877 3233 2 44444333334 44555555555543 455666666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHH
Q 045820 131 DGFCK----VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCG----VGKIHKALLLLFLM 202 (225)
Q Consensus 131 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m 202 (225)
..|.. .+++++|...|++..+.|. ...+..|-..|.. .++.++|..+|+..
T Consensus 65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---------------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 65 DFYENGKYVKKDLRKAAQYYSKACGLND---------------------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTTC---------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHcCCC---------------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 67776 7899999999999988764 3556666677776 78999999999999
Q ss_pred HhcCC
Q 045820 203 YEHGK 207 (225)
Q Consensus 203 ~~~g~ 207 (225)
.+.|.
T Consensus 124 a~~g~ 128 (138)
T 1klx_A 124 CRLGS 128 (138)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88764
No 182
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.01 E-value=0.016 Score=50.39 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=44.7
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMN 113 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~ 113 (225)
++..|+++.|+++.+.+ .+...|..+-..+.+.++++.|.+.|..+ ++++.+..++..
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~---~d~~~l~~l~~~ 719 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA---HDLESLFLLHSS 719 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH---TCHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc---cChhhhHHHHHH
Confidence 45677777777775443 36788999999999999999999999866 777776666554
No 183
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.99 E-value=0.038 Score=42.67 Aligned_cols=151 Identities=8% Similarity=0.054 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHH------------------HhcCC------H
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQD--TAVKFFSNH------------------LMVGR------V 104 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~------------------~~~g~------~ 104 (225)
+++++++.+++.+.+.. +-|..+|+.---.+.+.|.++ .+.++++.+ ...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 78899999999998774 448888998888887778776 777766666 22233 6
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 045820 105 EEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE-AMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVI 183 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li 183 (225)
+++++.++++.... +-|...|+-.-..+.+.|+... +..+..+..+.+- .-..+...+..+.
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~----------------~~~~s~~al~~la 265 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK----------------DQVTSSFALETLA 265 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG----------------TEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC----------------CCCCCHHHHHHHH
Confidence 66666666665432 2256666666666666665332 3344444433220 0015677888999
Q ss_pred HHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 184 QALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 184 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
..|.+.|+.++|.++++.+.+.--+....-|+...+
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 999999999999999999986433444555554443
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.97 E-value=0.0028 Score=52.35 Aligned_cols=124 Identities=7% Similarity=-0.057 Sum_probs=87.5
Q ss_pred cCCCCCChhhcchhhcCcchh--------------hhHHHHHHH-HhCCHHHHHHHHHHHHhc-----C--CCCChhhHH
Q 045820 19 SPSRSPSAAESLDLKENPRSL--------------QAQRFVDKI-KASPLKERIDIFNSIKKD-----G--TNWSVSDFN 76 (225)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~--------------~~~~l~~~~-~~~~~~~a~~~~~~m~~~-----g--~~~~~~~~~ 76 (225)
.+...|++++|+.++.+.... .++.+...+ ..|++++|..++++..+- | .+-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999998877663211 123333333 789999999999876432 2 222445689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 77 DLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 77 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.|-..|...|++++|..+++ +|++++....... .|++ .+.+.+-.++...+.+++|+.++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~---------~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMIC---------KAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHH---------HHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH---------HHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776 4566666655332 2433 45677778888999999999999999864
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.97 E-value=0.029 Score=44.47 Aligned_cols=79 Identities=20% Similarity=0.095 Sum_probs=62.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+...|+.+-.+|.+.|++++|...+++..+..- -+...|..+-.+|...|++++|...|++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-------------------SNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-------------------hhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 456788899999999999999999999987532 3567888889999999999999999999
Q ss_pred HHhcCCCC-CHHHHHHHHHHh
Q 045820 202 MYEHGKIP-SRTSHDMLIKKL 221 (225)
Q Consensus 202 m~~~g~~p-~~~~~~~ll~~~ 221 (225)
..+. .| +...+..+-..+
T Consensus 333 Al~l--~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 333 AQEI--APEDKAIQAELLKVK 351 (370)
T ss_dssp HHHH--CTTCHHHHHHHHHHH
T ss_pred HHHh--CCCCHHHHHHHHHHH
Confidence 8874 34 444444444433
No 186
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.96 E-value=0.011 Score=48.07 Aligned_cols=95 Identities=12% Similarity=-0.018 Sum_probs=71.6
Q ss_pred HHHhCCHHHHHHHHHHHHhc--C-CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045820 47 KIKASPLKERIDIFNSIKKD--G-TNW----SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~--g-~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 119 (225)
..+.|++++|..++++..+. . +.| ...+++.+..+|...|++++|..++++ ++.++.+..-. -
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~---------~L~i~~~~lg~-~ 366 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR---------TMEPYRIFFPG-S 366 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH---------HHHHHHHHSCS-S
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH---------HHHhHHHHcCC-C
Confidence 44789999999999887643 1 222 345788899999999999888887764 45566555432 2
Q ss_pred CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 120 KPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 120 ~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
.|++ .+++.+-..|...|++++|+.++++..+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4544 5699999999999999999999988654
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.017 Score=46.15 Aligned_cols=142 Identities=8% Similarity=-0.017 Sum_probs=90.5
Q ss_pred HhCCHHHHHHHHHHHHhc-CCCCChh---hHHHHHH-HHHhcCCHHHHHHHHHHH------------------------H
Q 045820 49 KASPLKERIDIFNSIKKD-GTNWSVS---DFNDLLM-ALVMLNEQDTAVKFFSNH------------------------L 99 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~-g~~~~~~---~~~~li~-~~~~~~~~~~a~~~~~~~------------------------~ 99 (225)
..|++++|.+.+.+..+. +-.++.. .....+. .+...|+.+.+..++... .
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY 146 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 778888888888776542 1111211 1222222 223346777777776555 5
Q ss_pred hcCCHHHHHHHHHHHhhC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHhhcCC
Q 045820 100 MVGRVEEAYEMLMNVKND----GLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG--VTQNVVTLIQLLQRLEMGH 172 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~l~~~~~~~~ 172 (225)
..|++++|..++.+.... +-.+ ...+|..+...|...|++++|..++++..... +..+..
T Consensus 147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------- 213 (434)
T 4b4t_Q 147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ------------- 213 (434)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH-------------
T ss_pred HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH-------------
Confidence 568888888888876532 2223 34579999999999999999999998876431 110000
Q ss_pred CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 173 IPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 173 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.-...+..+...+...|++++|...|.+..+
T Consensus 214 -~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 214 -TVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp -HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0134566777777888999998887777653
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.95 E-value=0.012 Score=47.98 Aligned_cols=78 Identities=10% Similarity=0.002 Sum_probs=61.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
...|+.+-.+|.+.|++++|...+++..+..- .+...|..+-.+|...|++++|...|++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDS-------------------ANEKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 57888999999999999999999999988642 46788899999999999999999999999
Q ss_pred HhcCCCCCH-HHHHHHHHHh
Q 045820 203 YEHGKIPSR-TSHDMLIKKL 221 (225)
Q Consensus 203 ~~~g~~p~~-~~~~~ll~~~ 221 (225)
.+. .|+. ..+..+-.++
T Consensus 378 l~l--~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 378 LEV--NPQNKAARLQISMCQ 395 (457)
T ss_dssp HTT--C----CHHHHHHHHH
T ss_pred HHh--CCCCHHHHHHHHHHH
Confidence 864 4433 3444444333
No 189
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.94 E-value=0.0055 Score=49.78 Aligned_cols=92 Identities=9% Similarity=0.028 Sum_probs=69.3
Q ss_pred hCCHHHHHHHHHHHHhc---CCC---C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 045820 50 ASPLKERIDIFNSIKKD---GTN---W-SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~---g~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 122 (225)
.|++++|..++++..+. -+. | ...+++.|..+|...|++++|..++++ +++++.+..... .|+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~---------aL~i~~~~lG~~-Hp~ 380 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK---------IIKPYSKHYPVY-SLN 380 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---------HHHHHHHHSCSS-CHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH---------HHHHHHHHcCCC-ChH
Confidence 47899999999876432 122 2 346789999999999999998887764 455665554322 455
Q ss_pred H-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 123 V-YTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 123 ~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
+ .++|.+-..|...|++++|+.++++..+
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 5 5699999999999999999999998764
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.90 E-value=0.019 Score=45.55 Aligned_cols=114 Identities=9% Similarity=0.039 Sum_probs=78.8
Q ss_pred HHHhCCHHHHHHHHHHHHhc---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKD---------------GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEML 111 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~ 111 (225)
+.+.|++++|+..|++..+. --+-+...|..+-.+|.+. |++++|...+
T Consensus 233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----------------g~~~~A~~~~ 296 (370)
T 1ihg_A 233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM----------------SDWQGAVDSC 296 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc----------------cCHHHHHHHH
Confidence 34889999999999887651 0112345566666666444 5555566666
Q ss_pred HHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccC
Q 045820 112 MNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVG 190 (225)
Q Consensus 112 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g 190 (225)
++..+. .| +...|..+-.+|.+.|++++|...|++..+..- -+...+..+-..+...+
T Consensus 297 ~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-------------------~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 297 LEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-------------------EDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHH
Confidence 665543 34 677889999999999999999999999887642 24556666667776666
Q ss_pred cHHHHHH
Q 045820 191 KIHKALL 197 (225)
Q Consensus 191 ~~~~a~~ 197 (225)
+.+++.+
T Consensus 356 ~~~~a~k 362 (370)
T 1ihg_A 356 AQKDKEK 362 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.87 E-value=0.032 Score=38.60 Aligned_cols=95 Identities=18% Similarity=0.098 Sum_probs=69.7
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCC-C-----C-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045820 47 KIKASPLKERIDIFNSIKKDGTN-W-----S-----VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~-~-----~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~ 115 (225)
..+.|++++|+..|+.-.+..-. | + ...|+.+-.++.+.|++++|...++ .|+++|++-.
T Consensus 21 l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~---------kAL~l~n~~~ 91 (159)
T 2hr2_A 21 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD---------KALHYFNRRG 91 (159)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------HHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH---------HHHHhhhccc
Confidence 34889999999999987654211 1 2 2278888888888888887777654 3445555444
Q ss_pred hCCCCCC-HHhH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 116 NDGLKPD-VYTY----TAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 116 ~~g~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
+ +.|+ ...| ...-.++...|++++|+..|++..+.
T Consensus 92 e--~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 E--LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp C--TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c--CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3 4664 4578 88889999999999999999998653
No 192
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.74 E-value=0.026 Score=48.96 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=87.4
Q ss_pred HHHhCCHHHHHH-HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHhhCC
Q 045820 47 KIKASPLKERID-IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF-------SNHLMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 47 ~~~~~~~~~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~-------~~~~~~g~~~~a~~~~~~m~~~g 118 (225)
++..+++++|.+ ++..+. +......++..+.+.|..+.|.++. +.....|+++.|+++.+.+
T Consensus 609 ~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~---- 678 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDE---- 678 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTC----
T ss_pred HHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhh----
Confidence 456788888877 553222 0122377777788888888877553 3337789999999885543
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCc
Q 045820 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK 191 (225)
Q Consensus 119 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-------~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~ 191 (225)
.+...|..+-..+.+.|+++.|+++|.++....- .-+..-...+.+..... .-++.-..+|.+.|+
T Consensus 679 --~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~-----~~~~~A~~~~~~~g~ 751 (814)
T 3mkq_A 679 --SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT-----GKFNLAFNAYWIAGD 751 (814)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTC
T ss_pred --CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc-----CchHHHHHHHHHcCC
Confidence 3667899999999999999999999998754321 00111111111111111 123444555666778
Q ss_pred HHHHHHHHHHH
Q 045820 192 IHKALLLLFLM 202 (225)
Q Consensus 192 ~~~a~~~~~~m 202 (225)
+++|.+++.++
T Consensus 752 ~~~a~~~~~~~ 762 (814)
T 3mkq_A 752 IQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 88887777765
No 193
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.72 E-value=0.0078 Score=48.86 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=72.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC---CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 045820 94 FFSNHLMVGRVEEAYEMLMNVKND---GLKP----DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ 166 (225)
Q Consensus 94 ~~~~~~~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~ 166 (225)
.+++..+.|++++|+.++++..+. -+.| -..+++.+..+|...|++++|+.++++..+.-.+
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~----------- 361 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI----------- 361 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH-----------
Confidence 344446789999999999988653 1222 2457999999999999999999999987643100
Q ss_pred HhhcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 167 RLEMGHIPR-TITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 167 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.-..-.|+ ..+++.|-..|...|++++|..++++..+
T Consensus 362 -~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 362 -FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp -HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 00011243 45789999999999999999999998754
No 194
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.67 E-value=0.0084 Score=48.71 Aligned_cols=94 Identities=7% Similarity=-0.136 Sum_probs=69.7
Q ss_pred HhcCCHHHHHHHHHHHhh---CCCC---CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcC
Q 045820 99 LMVGRVEEAYEMLMNVKN---DGLK---PD-VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMG 171 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~---~g~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~ 171 (225)
...|++++|+.++++..+ .-+. |+ ..++|.+..+|...|++++|+.++++..+.-.+ .-..
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~------------~lG~ 376 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK------------HYPV 376 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------HSCS
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH------------HcCC
Confidence 456889999999988654 2122 33 357999999999999999999999987643100 0001
Q ss_pred CCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 172 HIPR-TITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 172 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
-.|+ ..+|+.|-..|...|++++|..++++..+
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1244 45799999999999999999999998764
No 195
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.66 E-value=0.065 Score=40.52 Aligned_cols=87 Identities=8% Similarity=0.016 Sum_probs=63.7
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHh
Q 045820 47 KIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYT 125 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~ 125 (225)
..+.|++++|...|+...+.. +-+...|..+-.++.+.|+++ +|...+++..+. .| +...
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~----------------~A~~~~~~al~~--~p~~~~~ 74 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPE----------------QALADCRRALEL--DGQSVKA 74 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH----------------HHHHHHHHHTTS--CTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHH----------------HHHHHHHHHHHh--CCCCHHH
Confidence 448899999999999887763 226777888888885555554 445555544442 34 5677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
+..+-.+|.+.|++++|...|.+..+.
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888999999999999999887653
No 196
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.55 E-value=0.054 Score=36.95 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=62.8
Q ss_pred HHHhCCHHHHHHHHHHHHhc-------C----------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKD-------G----------TNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYE 109 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~-------g----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~ 109 (225)
.++.|++++|+..|+...+. . -+.+...|..+-.+|.+.|++ ++|..
T Consensus 21 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~----------------~~A~~ 84 (162)
T 3rkv_A 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL----------------HEAEE 84 (162)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH----------------HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH----------------HHHHH
Confidence 45889999999998876553 0 011234566677777555555 45555
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.+++..+.. +.+...|..+-.+|...|++++|...|++..+..
T Consensus 85 ~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 85 TSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 555544421 3367789999999999999999999999988763
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.51 E-value=0.013 Score=45.81 Aligned_cols=61 Identities=15% Similarity=0.032 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
.|+.+-.+|.+.|++++|...+++..+..- .+...|..+-.+|...|++++|...|++..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE-------------------KNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788889999999999999999999887542 3677899999999999999999999998865
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.48 E-value=0.0095 Score=41.22 Aligned_cols=102 Identities=12% Similarity=0.009 Sum_probs=76.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCccHHHHHHHHHHhh
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRS----------NEAMELLNEAIERGVTQNVVTLIQLLQRLE 169 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----------~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~ 169 (225)
+.+.+++|.+.+++..+.. +-+...|+.+-.++.+.+++ ++|...|++..+..-
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--------------- 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--------------- 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---------------
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc---------------
Confidence 4466788888888877642 23777888777788877664 589999988887642
Q ss_pred cCCCCCHHHHHHHHHHHHcc-----------CcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 170 MGHIPRTITFNNVIQALCGV-----------GKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 170 ~~~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
-+...|..+-.+|... |++++|++.|++..+ +.|+...|..-+...-+
T Consensus 78 ----~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 78 ----KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHT
T ss_pred ----CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHh
Confidence 3556788888888876 489999999999987 46888888777765543
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.014 Score=36.75 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=38.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|...+++..+..
T Consensus 16 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4455555555555555432 2367788999999999999999999999998753
No 200
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.45 E-value=0.27 Score=39.87 Aligned_cols=130 Identities=13% Similarity=0.023 Sum_probs=84.7
Q ss_pred ChhhHHHHHHHHHhcC---CHHHHHHHHHHH----------------------HhcCCHHHHHHHHHHHhhCCCCCCHHh
Q 045820 71 SVSDFNDLLMALVMLN---EQDTAVKFFSNH----------------------LMVGRVEEAYEMLMNVKNDGLKPDVYT 125 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~---~~~~a~~~~~~~----------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~ 125 (225)
++..+..|-..|.+.| +.++|...|+.. ...++.++|.++|++.. .| +...
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a 250 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPAS 250 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHH
Confidence 4447788888888888 888888888765 11268888999988877 32 4445
Q ss_pred HHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhc--CC---------------CCCHHHHHHHHHH
Q 045820 126 YTAIMDG-F--CKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEM--GH---------------IPRTITFNNVIQA 185 (225)
Q Consensus 126 ~~~ll~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~--~~---------------~p~~~~~~~li~~ 185 (225)
+..+-.. | ...+++++|...|++..+.|. ...+..|=.++.. |+ .-+...+..|-..
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ---PRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555444 3 458899999999999888773 2222222211111 12 2234455555556
Q ss_pred HHc----cCcHHHHHHHHHHHHhcCC
Q 045820 186 LCG----VGKIHKALLLLFLMYEHGK 207 (225)
Q Consensus 186 ~~~----~g~~~~a~~~~~~m~~~g~ 207 (225)
|.. ..+.++|..+|+...+.|.
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 655 3488999999998888764
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.40 E-value=0.036 Score=35.39 Aligned_cols=80 Identities=8% Similarity=-0.014 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 045820 55 ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFC 134 (225)
Q Consensus 55 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 134 (225)
.++..|++..+.. +-+...|..+-..+...|++++|...|+ +..+.. +.+...|..+-.+|.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~----------------~al~~~-p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLR----------------AALDFD-PTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHH----------------HHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH----------------HHHHHC-CCcHHHHHHHHHHHH
Confidence 4667777766553 3366778888888866666655555544 443321 235678889999999
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 045820 135 KVGRSNEAMELLNEAIER 152 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~~~ 152 (225)
+.|++++|...|++..+.
T Consensus 65 ~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 202
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.37 E-value=0.011 Score=46.27 Aligned_cols=118 Identities=10% Similarity=0.006 Sum_probs=60.4
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChh------------------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVS------------------DFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEM 110 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~------------------~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~ 110 (225)
+.|++++|...|++..+. .|+.. .|..+-.+|. +.|++++|...
T Consensus 191 ~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~----------------~~g~~~~A~~~ 252 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI----------------KLKRYDEAIGH 252 (338)
T ss_dssp SSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH----------------TTTCCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHH----------------HcCCHHHHHHH
Confidence 789999999999987654 33332 4444444454 44555666666
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHcc
Q 045820 111 LMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQA-LCGV 189 (225)
Q Consensus 111 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~-~~~~ 189 (225)
|++..+.. +-+...|..+-.+|...|++++|...|++..+.. | -+...+..+... ....
T Consensus 253 ~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p-----------------~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 253 CNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--P-----------------DDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C-----------------CCHHHHHHHHHHHHHHH
Confidence 66655432 2367889999999999999999999999876542 1 123344444443 2345
Q ss_pred CcHHHHHHHHHHHHh
Q 045820 190 GKIHKALLLLFLMYE 204 (225)
Q Consensus 190 g~~~~a~~~~~~m~~ 204 (225)
+..+++..+|+.|..
T Consensus 313 ~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 313 ALYQKQKEMYKGIFK 327 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHhhC
Confidence 667778888888864
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.35 E-value=0.27 Score=41.36 Aligned_cols=151 Identities=10% Similarity=0.006 Sum_probs=101.2
Q ss_pred HhCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHH------------------H
Q 045820 49 KASP-LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE----------QDTAVKFFSNH------------------L 99 (225)
Q Consensus 49 ~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~------------------~ 99 (225)
+.+. .++|+..++.+...+- -+..+|+.-=.++.+.++ ++++.++++.+ .
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4444 5678999999887632 255667765555555555 77788777777 4
Q ss_pred hcC--CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCH
Q 045820 100 MVG--RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG-RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176 (225)
Q Consensus 100 ~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~ 176 (225)
+.+ +++++++.++++.+.. +-+-.+|+----.+.+.| .++++.+.++++.+... -|.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-------------------~n~ 178 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-------------------SNY 178 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-------------------CCH
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-------------------CCc
Confidence 456 6788899888887743 237778888777777888 78888888888877654 345
Q ss_pred HHHHHHHHHHHc--------------cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 177 ITFNNVIQALCG--------------VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 177 ~~~~~li~~~~~--------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
..|+..-..+.+ .+.++++.+.+++..... +-|...|..+--.+
T Consensus 179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll 236 (567)
T 1dce_A 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLL 236 (567)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHH
Confidence 555555444443 256788999998888643 22455665544444
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.33 E-value=0.034 Score=38.43 Aligned_cols=96 Identities=9% Similarity=0.056 Sum_probs=74.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP-DVYTYT 127 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~ 127 (225)
+.+++++|...++.-.+.. +-+...|+.+=.++.+.++++.+...++ .+++|...|++..+- .| +..+|+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~------~~~eAi~~le~AL~l--dP~~~~A~~ 84 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ------MIQEAITKFEEALLI--DPKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH------HHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh------HHHHHHHHHHHHHHh--CcCcHHHHH
Confidence 5567888999998887764 4477888888888888777665544333 368899999988763 55 567899
Q ss_pred HHHHHHHhcC-----------CHHHHHHHHHHHHHcC
Q 045820 128 AIMDGFCKVG-----------RSNEAMELLNEAIERG 153 (225)
Q Consensus 128 ~ll~~~~~~g-----------~~~~a~~~~~~m~~~g 153 (225)
.+-.+|...| ++++|...|++..+..
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 9999998874 8999999999998753
No 205
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.21 Score=35.12 Aligned_cols=93 Identities=12% Similarity=0.186 Sum_probs=68.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------HhcCCHHHHHHHHHH
Q 045820 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH----------LMVGRVEEAYEMLMN 113 (225)
Q Consensus 44 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------~~~g~~~~a~~~~~~ 113 (225)
+--++..|+++.|.++.+.+. +...|..|-....+.|+++-|.+.|... ...|+.++..++-+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444679999999999988762 6778999999999999999999999866 233444443433333
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 114 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
-...| -+|.-...+.-.|+++++.++|.+
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333 367777778888999999988854
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.02 E-value=0.11 Score=31.05 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 72 VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 72 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
...|..+-..+.+.|++ ++|...|++..+.. +.+...+..+-..|.+.|++++|...+++..+
T Consensus 9 ~~~~~~la~~~~~~~~~----------------~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDY----------------DEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCH----------------HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555566666555555 55555555544321 23567888899999999999999999999887
Q ss_pred cC
Q 045820 152 RG 153 (225)
Q Consensus 152 ~g 153 (225)
..
T Consensus 72 ~~ 73 (91)
T 1na3_A 72 LD 73 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.94 E-value=0.2 Score=39.58 Aligned_cols=75 Identities=11% Similarity=0.048 Sum_probs=60.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
+.+..+|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------------------~s~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------------------MSWLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------------------CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4577888888777777899999999999999875 66667766677888899999999999
Q ss_pred HHHHhcCCCCCHHHHHH
Q 045820 200 FLMYEHGKIPSRTSHDM 216 (225)
Q Consensus 200 ~~m~~~g~~p~~~~~~~ 216 (225)
++.... .|...||.-
T Consensus 334 ~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 334 LTAFNL--RPGANTLYW 348 (372)
T ss_dssp HHHHHH--SCSHHHHHH
T ss_pred HHHHhc--CCCcChHHH
Confidence 988764 577777653
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.84 E-value=0.079 Score=32.99 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=45.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 71 SVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 71 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
+...|..+-..|.+.|+ +++|...|++..+.. +-+...|..+-.+|.+.|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~----------------~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDN----------------ASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566667777755555 455555555555432 2256689999999999999999999999877
Q ss_pred Hc
Q 045820 151 ER 152 (225)
Q Consensus 151 ~~ 152 (225)
+.
T Consensus 69 ~l 70 (100)
T 3ma5_A 69 EV 70 (100)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.61 E-value=0.19 Score=30.73 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=48.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHhcC
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI-TFNNVIQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
...+.+.|++++|...|++..+..- .+.. .|..+-.+|...|++++|...|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-------------------VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-------------------STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-------------------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4567889999999999999987642 3456 88888899999999999999999998753
No 210
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.41 E-value=0.66 Score=35.68 Aligned_cols=99 Identities=6% Similarity=-0.014 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHH----------------------Hhc---CCHHH
Q 045820 54 KERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN--EQDTAVKFFSNH----------------------LMV---GRVEE 106 (225)
Q Consensus 54 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~----------------------~~~---g~~~~ 106 (225)
++|+.+++.+...+ +-+...|+.-=..+...+ ++++++++++.+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 45666666655442 113333555555555555 566666665555 112 67788
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCC
Q 045820 107 AYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN--EAMELLNEAIERGV 154 (225)
Q Consensus 107 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~ 154 (225)
++++++++.+.. +-+-.+|+----...+.|.++ +++..++++.+...
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 888888887642 347778888777778888887 88999999887654
No 211
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.09 E-value=1.2 Score=36.71 Aligned_cols=163 Identities=8% Similarity=0.050 Sum_probs=93.7
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC------------------------HHHHHHHHHHH----Hh
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE------------------------QDTAVKFFSNH----LM 100 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~------------------------~~~a~~~~~~~----~~ 100 (225)
+.|+++.|..++++-.+. +.+...|.. |+...+ ......++... .+
T Consensus 225 ~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 789999999999988877 334333332 222111 01111222111 34
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH------------
Q 045820 101 VGRVEEAYEMLMNVKNDGLKPDVYTY--TAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQ------------ 166 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~------------ 166 (225)
.++.+.|..+|++....+ .+...| .+.+.... .++.+.|..+|+...+..-. +...+...++
T Consensus 299 ~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 299 KRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 677999999999883222 233333 23343333 23699999999998864311 1222222221
Q ss_pred -HhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc--C---CCC------------CHHHHHHHHHHhh
Q 045820 167 -RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH--G---KIP------------SRTSHDMLIKKLD 222 (225)
Q Consensus 167 -~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g---~~p------------~~~~~~~ll~~~~ 222 (225)
..+.. ......|...+.--...|+.+.+..++++.... + -.| ...++..+++.|.
T Consensus 375 ~l~er~-~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~ 447 (493)
T 2uy1_A 375 ALFKRL-EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFN 447 (493)
T ss_dssp HHHHHS-CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhh
Confidence 11222 234677888888777889999999988888741 1 111 1267777887774
No 212
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.04 E-value=0.63 Score=37.08 Aligned_cols=116 Identities=9% Similarity=0.078 Sum_probs=80.8
Q ss_pred HhCCHHHHHHHHHHHHhc--C-CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 045820 49 KASPLKERIDIFNSIKKD--G-TNWSV--SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV 123 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~--g-~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 123 (225)
..|+.+.+...+++.... | .-++. ..|..-.....+.-..+....+.+.....|+.+++...+..+.... +-+.
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E 205 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-PYRE 205 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 357888888888776554 3 22332 2344444444444444455555555578899999999888887542 3488
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHHHHHHH
Q 045820 124 YTYTAIMDGFCKVGRSNEAMELLNEAIE-----RGVTQNVVTLIQLL 165 (225)
Q Consensus 124 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~l~ 165 (225)
..|-.+|.++.+.|+..+|++.|++..+ .|+.|+..+-...-
T Consensus 206 ~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 206 PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 8999999999999999999999988754 48887776544433
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.82 E-value=0.17 Score=30.91 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVY-TYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..|++++|...|++..+.. +-+.. .|..+-.+|.+.|++++|...|++..+..
T Consensus 12 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 12 NQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4577788888888776642 22556 88888999999999999999999998764
No 214
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=94.78 E-value=1.1 Score=35.07 Aligned_cols=147 Identities=7% Similarity=0.029 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHH------------------Hhc-C-CHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN-EQDTAVKFFSNH------------------LMV-G-RVEEAYE 109 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~------------------~~~-g-~~~~a~~ 109 (225)
...++|+.+++.+...+-. +..+|+.-=..+...+ .+++++.+++.+ ... + +.+++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4456788888888776322 5556777666666677 488888888777 222 4 7788899
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSN--------EAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
+++++.+.. +-+-.+|+----...+.|.++ ++++.++++.+... -|...|+.
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-------------------~N~SAW~~ 206 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-------------------RNNSAWGW 206 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-------------------TCHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-------------------CCHHHHHH
Confidence 999888643 336777776555555555555 88888888888665 35666666
Q ss_pred HHHHHHccCc-------HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 045820 182 VIQALCGVGK-------IHKALLLLFLMYEHGKIPSRTSHDMLIK 219 (225)
Q Consensus 182 li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 219 (225)
.-..+.+.+. ++++++.+++.+... .-|...|+.+-.
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRG 250 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 6666666554 678888888877643 235566655433
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.76 E-value=0.61 Score=31.84 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHH
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG---RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITF 179 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~ 179 (225)
.+..+.+.|.+..+.|. ++..+.-.+-.++++.+ +.+++..++++..+.. .|+ -+...+
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~----------------~~rd~l 74 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKE----------------EQRDYV 74 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHH----------------HHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-Ccc----------------chHHHH
Confidence 45566677777666654 67777666677888888 6779999999988764 210 023444
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHH
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTS 213 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 213 (225)
-.+--+|.+.|++++|.+.++.+.+. .|+-.-
T Consensus 75 Y~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n~Q 106 (152)
T 1pc2_A 75 FYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQ 106 (152)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH
Confidence 55566779999999999999999874 565433
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.43 E-value=0.53 Score=35.95 Aligned_cols=95 Identities=15% Similarity=0.043 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCC
Q 045820 102 GRVEEAYEMLMNVKNDGLKPD---VYTYTAIMDGFCKV-----GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHI 173 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~ 173 (225)
+....|...+++..+ +.|+ -..|..+-..|.+. |+.++|.+.|++..+.+
T Consensus 177 ~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-------------------- 234 (301)
T 3u64_A 177 DTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-------------------- 234 (301)
T ss_dssp HHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--------------------
T ss_pred HhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--------------------
Confidence 344566666666655 3565 55789999999995 99999999999999865
Q ss_pred C--CHHHHHHHHHHHHcc-CcHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 045820 174 P--RTITFNNVIQALCGV-GKIHKALLLLFLMYEHGKI--PSRTSHDMLI 218 (225)
Q Consensus 174 p--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll 218 (225)
| +..++...-..++.. |+.+++.+.+++....... |+....+.+-
T Consensus 235 P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 235 SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 5 367778888888884 9999999999999987766 7766666544
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.39 E-value=0.53 Score=29.51 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=56.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
+..-+-.|-..+.+.|+++.|...|+...+.--.++ ..-.+....+..+..+|.+.|++++|..++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~------------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~ 71 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE------------ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC------------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC------------CCcccHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 455566778888999999999999988776411000 00115667889999999999999999999999
Q ss_pred HHhcCCCCCH
Q 045820 202 MYEHGKIPSR 211 (225)
Q Consensus 202 m~~~g~~p~~ 211 (225)
..+. .|+.
T Consensus 72 al~l--~P~~ 79 (104)
T 2v5f_A 72 LLEL--DPEH 79 (104)
T ss_dssp HHHH--CTTC
T ss_pred HHhc--CCCC
Confidence 9863 4554
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.03 E-value=0.87 Score=30.63 Aligned_cols=108 Identities=15% Similarity=0.229 Sum_probs=73.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHhcCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045820 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSD---FNDLLMALVMLNEQDT-AVKFFSNHLMVGRVEEAYEMLMNVKNDGL 119 (225)
Q Consensus 44 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~~~~~~-a~~~~~~~~~~g~~~~a~~~~~~m~~~g~ 119 (225)
+.+.+.+-+-+-..++++.+=+. .|... .-.++..|++.|...+ +-..++.+...|.-+.-.+++..+.. +.
T Consensus 46 ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~ 121 (172)
T 1wy6_A 46 ICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NN 121 (172)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---C
T ss_pred eeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cC
Confidence 33344555555555555444322 22221 4567888888875432 22334555788999999999998643 34
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
+|+....-.+-.||.+.|+..+|.+++.+.-+.|++
T Consensus 122 ~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 122 EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 677777888899999999999999999999999985
No 219
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.02 E-value=0.81 Score=30.26 Aligned_cols=91 Identities=9% Similarity=-0.112 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
++.++|.++|.+..+.| .|+.. +-..|...+.+++|...|++..+.|. ...+..
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~---------------------~~a~~~ 62 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNS---------------------GNGCRF 62 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTC---------------------HHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCC---------------------HHHHHH
Confidence 46788888888888877 33333 55666677788999999999988764 345555
Q ss_pred HHHHHHc----cCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 182 VIQALCG----VGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 182 li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
|-..|.. .++.++|.++|+...+.| +...+..|-..|
T Consensus 63 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y 103 (138)
T 1klx_A 63 LGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQ 103 (138)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHH
Confidence 5555655 677888888888877765 344444444333
No 220
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.65 E-value=0.67 Score=36.90 Aligned_cols=72 Identities=18% Similarity=0.082 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh-
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE- 204 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 204 (225)
...++.++...|+++++...+.......- .+...|..+|.++.+.|+..+|.+.|+.+.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-------------------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-------------------YREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567778889999999988888875431 5778999999999999999999999998754
Q ss_pred ----cCCCCCHHHHHH
Q 045820 205 ----HGKIPSRTSHDM 216 (225)
Q Consensus 205 ----~g~~p~~~~~~~ 216 (225)
-|+.|+..+-..
T Consensus 235 L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 235 LADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHSCCCCHHHHHH
T ss_pred HHHHhCCCCCHHHHHH
Confidence 399998876443
No 221
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=93.65 E-value=2 Score=33.63 Aligned_cols=196 Identities=7% Similarity=0.068 Sum_probs=129.6
Q ss_pred CCCChhhcchhhcCcchh---hhHH---HHHHH-HhC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-C-CHHHH
Q 045820 22 RSPSAAESLDLKENPRSL---QAQR---FVDKI-KAS-PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVML-N-EQDTA 91 (225)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~---~~~~---l~~~~-~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-~-~~~~a 91 (225)
+.+..++|+++..++-.. .+.. --..+ ..+ .+++++..++.+.... +-+..+|+.--..+.+. + +.+++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 334445677666653222 1211 11122 345 5999999999998775 34788899888777776 6 88899
Q ss_pred HHHHHHH------------------HhcCCHH--------HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC-------
Q 045820 92 VKFFSNH------------------LMVGRVE--------EAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR------- 138 (225)
Q Consensus 92 ~~~~~~~------------------~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------- 138 (225)
+++++.+ ...|.++ ++++.++++.+.. .-|...|+---..+.+.+.
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 9988888 2223333 8888999887753 3477889888888877776
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHH---HHHHhhcC---------------------------------------CCCCH
Q 045820 139 SNEAMELLNEAIERGVTQNVVTLIQ---LLQRLEMG---------------------------------------HIPRT 176 (225)
Q Consensus 139 ~~~a~~~~~~m~~~g~~p~~~t~~~---l~~~~~~~---------------------------------------~~p~~ 176 (225)
++++++.+++...... -|...|+- ++.....+ -.++.
T Consensus 224 ~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 6888888888776532 24444433 23221111 02566
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
.....+...|...|+.++|.++++.+.+.--+....-|+...+-
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 67888999999999999999999999765444455555554443
No 222
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.87 E-value=1.1 Score=28.26 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
|.-+..+-++.+....+.|+.....+.+.||.|..++..|.++|+-.+..-- +...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 5566777788888888999999999999999999999999999999885432 1233454444
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.86 E-value=1.3 Score=30.25 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=65.3
Q ss_pred HhCCH------HHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 045820 49 KASPL------KERIDIFNSIKKDGTNWS-VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 49 ~~~~~------~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p 121 (225)
+.|++ ++..++|++-... ++|+ ...|...|..+.+-- +|.+ .+++++|.++|+.+.+.+-+-
T Consensus 25 ~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-------~~~e---i~D~d~aR~vy~~a~~~hKkF 93 (161)
T 4h7y_A 25 KNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-------ELKA---IQEPDDARDYFQMARANCKKF 93 (161)
T ss_dssp HHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH-------HHHH---HHCGGGCHHHHHHHHHHCTTB
T ss_pred HcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH-------HHHH---hcCHHHHHHHHHHHHHHhHHH
Confidence 45777 7777888776654 4554 333555665554422 1222 278888888888886543232
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 158 (225)
...|-..-.-=.+.|++++|.+++.+.+..+-+|..
T Consensus 94 -AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 94 -AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 566666666668899999999999999988866443
No 224
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=92.83 E-value=2.7 Score=32.68 Aligned_cols=136 Identities=10% Similarity=-0.005 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHH------------------HhcCC-HHHHHHHH
Q 045820 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN--EQDTAVKFFSNH------------------LMVGR-VEEAYEML 111 (225)
Q Consensus 53 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~------------------~~~g~-~~~a~~~~ 111 (225)
+++++..++.+.... +-+..+|+.---.+.+.+ +++.+..+++.+ ...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 678888888887764 448888988888887777 478888888777 34455 57888888
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHH
Q 045820 112 MNVKNDGLKPDVYTYTAIMDGFCKV--------------GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTI 177 (225)
Q Consensus 112 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~ 177 (225)
+++.+.. +-|...|+-.-..+.+. +.++++++.+.+...... -|..
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-------------------~d~S 228 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-------------------NDQS 228 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-------------------TCHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-------------------CCHH
Confidence 8887643 23677777766555554 346777777777776542 3445
Q ss_pred HHHHHHHHHHcc-----------CcHHHHHHHHHHHHhcCCCCCH
Q 045820 178 TFNNVIQALCGV-----------GKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 178 ~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
.|+-+-..+.+. +.++++++.++++.+. .||.
T Consensus 229 aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 229 AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 555443333333 4578899999998864 4554
No 225
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=92.60 E-value=0.9 Score=32.77 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 045820 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNW 70 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~ 70 (225)
.+..++..+++.|+.+....+++.+.+.|..+
T Consensus 8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 34444555555555555555555444444333
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.57 E-value=1.1 Score=27.55 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=46.3
Q ss_pred CCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 045820 121 PDVYTYTAIMDGFCKVGR---SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 197 (225)
.|...+..+-.++...++ .++|..++++..+..- -++.....+-..+.+.|++++|+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-------------------~~~rA~~~lg~~~~~~g~y~~Ai~ 64 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-------------------YNEAALSLIANDHFISFRFQEAID 64 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-------------------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-------------------CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 355556666666654444 6888888888877542 345666666777888888888888
Q ss_pred HHHHHHhc
Q 045820 198 LLFLMYEH 205 (225)
Q Consensus 198 ~~~~m~~~ 205 (225)
.|+.+.+.
T Consensus 65 ~w~~~l~~ 72 (93)
T 3bee_A 65 TWVLLLDS 72 (93)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 88888865
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.87 E-value=2.3 Score=29.75 Aligned_cols=92 Identities=11% Similarity=0.094 Sum_probs=51.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------ccHHHHHHHHHHhhcC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT-------QNVVTLIQLLQRLEMG 171 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-------p~~~t~~~l~~~~~~~ 171 (225)
.+.|+++.|.++.+++. +...|..+-....+.|+++-|+++|.+....+-- -|..-+..+.+.....
T Consensus 16 L~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~ 89 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTR 89 (177)
T ss_dssp HHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHC
Confidence 45677777777766552 5667888888888888888888877765432110 0001111111111111
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 045820 172 HIPRTITFNNVIQALCGVGKIHKALLLLFL 201 (225)
Q Consensus 172 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 201 (225)
.-+|.-..++...|+++++.++|.+
T Consensus 90 -----g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 90 -----EDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp -----TCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1345555666667777777777654
No 228
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.63 E-value=2.6 Score=28.10 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
|.-+..+-++.+....+.|+.....+.|.+|.|..|+..|.++|+-.+..- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 566777788888888899999999999999999999999999999988543 22233444444
No 229
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=90.60 E-value=4.9 Score=31.19 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=76.0
Q ss_pred hhhhHHHHHHH----HhCCHH-HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHH----
Q 045820 38 SLQAQRFVDKI----KASPLK-ERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE----------QDTAVKFFSNH---- 98 (225)
Q Consensus 38 ~~~~~~l~~~~----~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~---- 98 (225)
...|..+...+ +.|.+. +|+.+++.+...+. -+..+|+.-=..+...+. ++.+..+++.+
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 33444444433 566655 79999999987632 244456654333332222 56677777666
Q ss_pred --------------HhcC--CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCC
Q 045820 99 --------------LMVG--RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR-SNEAMELLNEAIERGV 154 (225)
Q Consensus 99 --------------~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~ 154 (225)
...| ++++++.+++++.+.. +-|-.+|+----...+.|. +++++..++++.+...
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p 176 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 176 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence 3345 5889999999998743 3477788877777778887 5889999999988764
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.38 E-value=3.9 Score=33.58 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=59.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHH------------------HhcCCHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM-LNEQDTAVKFFSNH------------------LMVGRVEEAYE 109 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~------------------~~~g~~~~a~~ 109 (225)
+.++.+.|..+|+.. +.. ..+...|......-.. .++.+.|..+|+.. ...|+.+.|..
T Consensus 298 r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 577899999999888 321 1233444322211111 23577777777655 34466677777
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
+|++.. .....|...+.-=...|+.+.+..+++++.+
T Consensus 376 l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 376 LFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777762 2456677777666677888777777777653
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.71 E-value=3.5 Score=28.07 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CH-HhHHHH
Q 045820 53 LKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP--DV-YTYTAI 129 (225)
Q Consensus 53 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p--~~-~~~~~l 129 (225)
...+.+.|..-.+.|. ++..+.-.+-.++++.++.+ +.+++..+|++..+.. .| .. ..|+.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~-------------~~~~gI~lLe~ll~~~-~p~~~rd~lY~L- 77 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYND-------------DIRKGIVLLEELLPKG-SKEEQRDYVFYL- 77 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHH-------------HHHHHHHHHHHHHHHS-CHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHH-------------HHHHHHHHHHHHHhcC-CccchHHHHHHH-
Confidence 4455666666555554 67777777777887766321 3344444555444432 23 12 23554
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 045820 130 MDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
--+|.+.|++++|.+.++...+.
T Consensus 78 Av~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 78 AVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhc
Confidence 44789999999999999999875
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.10 E-value=2.7 Score=26.05 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=46.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND--GLKPDVYTYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 70 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
.+...+-.+-..+.+.++++.|...|+.. .+.+ ... +-.+....+..+-.+|.+.|++++|...++
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~A---------l~~~---~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~ 70 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQA---------LRQL---DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTK 70 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHHH---HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHH---------HHhh---hccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 34445555666666666666655555432 1111 111 113456778999999999999999999999
Q ss_pred HHHHc
Q 045820 148 EAIER 152 (225)
Q Consensus 148 ~m~~~ 152 (225)
+..+.
T Consensus 71 ~al~l 75 (104)
T 2v5f_A 71 KLLEL 75 (104)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 233
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=88.73 E-value=9.7 Score=31.89 Aligned_cols=97 Identities=9% Similarity=-0.045 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHH
Q 045820 104 VEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVG--RSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNN 181 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~ 181 (225)
++++++.++++.+.. +-+..+|+---..+.+.+ +++++...++++.+... -|...|+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-------------------~N~~aW~~ 148 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-------------------RNFHCWDY 148 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-------------------ccccHHHH
Confidence 899999999998743 236778888888888889 77999999999998764 46778887
Q ss_pred HHHHHHccC-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 182 VIQALCGVG-KIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 182 li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
---.+.+.| ..+++.+.++++++... -|...|+..-..+
T Consensus 149 R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll 188 (567)
T 1dce_A 149 RRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLL 188 (567)
T ss_dssp HHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHH
Confidence 777777778 88999999999887542 2566666544443
No 234
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=87.98 E-value=2.4 Score=30.95 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh-------HHHHHHHHH--hcCCHHHHHHHHHH
Q 045820 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD-------FNDLLMALV--MLNEQDTAVKFFSN 97 (225)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-------~~~li~~~~--~~~~~~~a~~~~~~ 97 (225)
..+-.++..+++.|+.+....+++.+.+.|..++... ++.|..|.. +.|+.+-+..+++.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3455678888899999888888888877777666443 344554442 56777777777665
No 235
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=86.46 E-value=6.5 Score=31.08 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=42.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
..|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++.....
T Consensus 289 ~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 289 VKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3477777788888777654 788888888888999999999999999888753
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.40 E-value=3.5 Score=26.00 Aligned_cols=47 Identities=17% Similarity=-0.013 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 52 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
+.-+..+-++.+....+-|++.+..+.+.||-+.+|+..|.++|+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44556666777777889999999999999998888888888887766
No 237
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=86.10 E-value=4.9 Score=27.82 Aligned_cols=17 Identities=0% Similarity=-0.085 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHhCCHHH
Q 045820 39 LQAQRFVDKIKASPLKE 55 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~ 55 (225)
.+..++..+++.|+.+-
T Consensus 38 ~g~t~L~~A~~~~~~~~ 54 (201)
T 3hra_A 38 EGNTPLNIAVHNNDIEI 54 (201)
T ss_dssp TSCCHHHHHHHHTCHHH
T ss_pred CCCCHHHHHHHcCCHHH
Confidence 34456666666666443
No 238
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=85.71 E-value=4.4 Score=24.73 Aligned_cols=48 Identities=15% Similarity=0.123 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 045820 104 VEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEAIERG 153 (225)
Q Consensus 104 ~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 153 (225)
.++|..++++..+. .| ++.+...+-..+.+.|++++|...|+++.+..
T Consensus 25 ~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 46677777766653 45 66778888889999999999999999999764
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=84.98 E-value=6.2 Score=25.87 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=59.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNE---AMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~ 176 (225)
....+..+.+-|.+....|. |+..+--.+-.+++++.+..+ +..++++..+.+- |. -..
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~----------------~~R 74 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KE----------------EQR 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HH----------------HHH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cc----------------hHH
Confidence 34455566666666655454 666655555668888886665 8888888776541 10 022
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 177 ITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 177 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
...-.|--++.+.|++++|.+.++.+.+. .|+
T Consensus 75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCC
Confidence 33345557888999999999999999874 453
No 240
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.60 E-value=6.1 Score=26.38 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=42.7
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 045820 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKK 220 (225)
Q Consensus 166 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 220 (225)
.+......|+.....+-+.+|-+.+++..|.++|+-.+.+ ..+...+|..+++-
T Consensus 78 ~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 78 TLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 3445566699999999999999999999999999998854 23445568777764
No 241
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=83.92 E-value=12 Score=28.47 Aligned_cols=88 Identities=15% Similarity=0.065 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHhHH
Q 045820 53 LKERIDIFNSIKKDGTNWS---VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP--DVYTYT 127 (225)
Q Consensus 53 ~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~ 127 (225)
...|..++++..+. .|+ -..|..+-..|.+... .--|+.++|.+.|++-.+ +.| +..++.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp-----------~~gGd~ekA~~~ferAL~--LnP~~~id~~v 243 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPE-----------SFGGGMEKAHTAFEHLTR--YCSAHDPDHHI 243 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCT-----------TTTCCHHHHHHHHHHHHH--HCCTTCSHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCC-----------ccCCCHHHHHHHHHHHHH--hCCCCCchHHH
Confidence 34455555554443 555 4568888888866421 124677777777777766 355 377777
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcCCC
Q 045820 128 AIMDGFCKV-GRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 128 ~ll~~~~~~-g~~~~a~~~~~~m~~~g~~ 155 (225)
..-..+++. |+.+++.+.+++.......
T Consensus 244 ~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 244 TYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 888888885 9999999999999987654
No 242
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.82 E-value=6.1 Score=24.82 Aligned_cols=50 Identities=16% Similarity=0.052 Sum_probs=37.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
...|++++|..+.+.+. -||...|-++ +-.|.|..++++.-+.++-..|-
T Consensus 50 mNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg~ 99 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNP----WPALEPWFAL--CEWHLGLGAALDRRLAGLGGSSD 99 (115)
T ss_dssp HHTTCHHHHHGGGTTCC----CGGGHHHHHH--HHHHTTCHHHHHHHHHHHHTCSS
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHHHHHhCCC
Confidence 45677777776644333 7999998876 45688988999888888887764
No 243
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.54 E-value=6.3 Score=24.79 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=36.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
...|++++|..+.+.+. -||...|-++ +-.|.|..++++.-+.++-..|-
T Consensus 51 mNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg~ 100 (116)
T 2p58_C 51 MNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESRLNRLARSQD 100 (116)
T ss_dssp HHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHHHHHHTTCCC
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHHHHHhCCC
Confidence 45677777777655444 7999998876 44688888888888878777664
No 244
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=83.26 E-value=0.021 Score=46.90 Aligned_cols=140 Identities=12% Similarity=0.018 Sum_probs=92.4
Q ss_pred CCchhhHhhhcCCCCCChhhcchhhcCcc-hhhhHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 045820 9 PTPFSVLLVDSPSRSPSAAESLDLKENPR-SLQAQRFVDKI-KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLN 86 (225)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 86 (225)
.+..+..|-.+..+.+++.+|++.+-+.+ ...+..++..+ ++|.+++-+..+..-++. ..++.+=+.|+.+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhC
Confidence 34566678888999999999999887744 45577777766 788888888877655555 335566778999999998
Q ss_pred CHHHHHHHH------------HHHHhcCCHHHHHHHHHHHhhC--------------------CCCCCHHhHHHHHHHHH
Q 045820 87 EQDTAVKFF------------SNHLMVGRVEEAYEMLMNVKND--------------------GLKPDVYTYTAIMDGFC 134 (225)
Q Consensus 87 ~~~~a~~~~------------~~~~~~g~~~~a~~~~~~m~~~--------------------g~~p~~~~~~~ll~~~~ 134 (225)
+..+..+++ ++....|.++.|.-+|..+... .-.-++.||--+-.+|.
T Consensus 131 rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv 210 (624)
T 3lvg_A 131 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 210 (624)
T ss_dssp SSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred cHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence 876554443 2222233333333333222110 11346788888888999
Q ss_pred hcCCHHHHHHHHHHHH
Q 045820 135 KVGRSNEAMELLNEAI 150 (225)
Q Consensus 135 ~~g~~~~a~~~~~~m~ 150 (225)
..+.+.-|.-+--..+
T Consensus 211 d~~EfrLAqicGLniI 226 (624)
T 3lvg_A 211 DGKEFRLAQMCGLHIV 226 (624)
T ss_dssp HSCTTTTTTHHHHHHH
T ss_pred CchHHHHHHHhcchhc
Confidence 8888877766554444
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.38 E-value=24 Score=32.29 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
.|..+.+++...|++++|...+-.+.....+ ...+..|+ .|++.+.. ..|+ .+--.|..++..+++..-.
T Consensus 940 l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~------~~L~-~lpf~gl~~~Vd~IL~~kA 1010 (1139)
T 4fhn_B 940 ITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKI------NQLL-NYSMPTLRQDVDNLLERKA 1010 (1139)
T ss_dssp HHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCH------HHHH-HHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCCh------hhhh-CCCCccHHHHHHHHHHHHH
Confidence 5899999999999999999999888876655 33444454 56655531 1121 2334556666666665433
No 246
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=82.06 E-value=10 Score=26.13 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=12.6
Q ss_pred hhHHHHHHHHhCCHHHHHHHHH
Q 045820 40 QAQRFVDKIKASPLKERIDIFN 61 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~~a~~~~~ 61 (225)
+..++..++..|+.+....++.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQ 26 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHT
T ss_pred cccHHHHHHHhccHHHHHHHHH
Confidence 4455666666666665555543
No 247
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.87 E-value=17 Score=29.18 Aligned_cols=52 Identities=6% Similarity=-0.079 Sum_probs=37.3
Q ss_pred HHHhCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 47 KIKASPLKERIDIFNSIKKD--GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
.++.|+++.|.+.+.+++.. +..--...|-..|..+...+++..+...+.+.
T Consensus 141 ~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 141 YAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34889999999999888765 23334556777788887778887777666554
No 248
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.90 E-value=14 Score=26.32 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 045820 101 VGRVEEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158 (225)
Q Consensus 101 ~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 158 (225)
.+...++.++|..|..+||-... .-|-..-..+-..|++.+|..+|..-++.+-+|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44577999999999998887754 45888888889999999999999999988877643
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.57 E-value=27 Score=28.24 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=34.4
Q ss_pred HhcCCHHHHHHHHHHHhh--CCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKN--DGLKPD---VYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~--~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
-..|++.+|.+++.++.. .|.... +..|...+..|...+++.+|..++.+..
T Consensus 148 e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 148 KEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456788888888777653 222221 3456677777778888888877777754
No 250
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=76.58 E-value=11 Score=26.62 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=14.3
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 181 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
+.+...+..|+.+ +.+.+.+.|..|+
T Consensus 179 t~L~~A~~~~~~~----~v~~Ll~~g~~~~ 204 (240)
T 3eu9_A 179 TALHWAVLAGNTT----VISLLLEAGANVD 204 (240)
T ss_dssp CHHHHHHHHTCHH----HHHHHHHHTCCTT
T ss_pred cHHHHHHHcCCHH----HHHHHHHcCCCCC
Confidence 3455555667665 4444455566554
No 251
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.42 E-value=9 Score=27.94 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=56.3
Q ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHH-----------------
Q 045820 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD--FNDLLMALVMLNEQDTAVKFFSNH----------------- 98 (225)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~----------------- 98 (225)
..+..++..++..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+.+..+++.-
T Consensus 70 ~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~ 145 (285)
T 1wdy_A 70 KNGATPFLLAAIAGSVKLL----KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLR 145 (285)
T ss_dssp TTCCCHHHHHHHHTCHHHH----HHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTT
T ss_pred CCCCCHHHHHHHcCCHHHH----HHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhc
Confidence 4455677777777775543 33444555443321 122344445566666665555431
Q ss_pred ----------HhcCCHHHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 045820 99 ----------LMVGRVEEAYEMLMNVKNDGLKPD---VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157 (225)
Q Consensus 99 ----------~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 157 (225)
+..|+.+-+..+++. .|..++ ..-.+.+ ...+..++......+++.+.+.|..++
T Consensus 146 ~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 146 KGGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CCCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCC
Confidence 344554444433322 143332 2223333 334455665556667777777776543
No 252
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=75.37 E-value=7.2 Score=29.73 Aligned_cols=38 Identities=11% Similarity=0.009 Sum_probs=20.4
Q ss_pred HhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 167 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
+++.|..+|..+ .+...++.|+.+ +.+.+.+.|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 345566566544 333445556654 55666777776664
No 253
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=74.66 E-value=18 Score=24.97 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=53.6
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045820 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNW-S-VSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKND 117 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~-~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~ 117 (225)
.|..+..+++.|+++....+++. +... + ..-++.| ...+ ..|+.+.-.++.+.+.+.
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~L-h~A~----------------~~~~~~~~~~iv~~Ll~~ 64 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEK----GYEDKESVLKSNIL-YDVL----------------RNNNDEARYKISMFLINK 64 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHH-HHHT----------------TCSCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHcCCHHHHHHHHhc----CcccccccCCCCHH-HHHH----------------HcCCcchHHHHHHHHHHC
Confidence 45668888899999986666543 3221 1 1123333 3332 334444444555556667
Q ss_pred CCCCCHH---hHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCccH
Q 045820 118 GLKPDVY---TYTAIMDGFCK-VGRSNEAMELLNEAIERGVTQNV 158 (225)
Q Consensus 118 g~~p~~~---~~~~ll~~~~~-~g~~~~a~~~~~~m~~~g~~p~~ 158 (225)
|..++.. -++.+..++.. ..+.....++.+.+.+.|..++.
T Consensus 65 Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 7666543 24455444433 23445556777777777766543
No 254
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.65 E-value=13 Score=25.29 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 045820 105 EEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 156 (225)
+++.++|..|.++||-... .-|...-..+-..|++.+|..+|..-++.+-+|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3488999999999887755 458888888899999999999999999888775
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.96 E-value=47 Score=30.45 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
|.-++..+-+.+.++.+.++-....+....-+.. .....|..+..++...|++++|...+-.+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~--------------~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDED--------------LSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH--------------HHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh--------------hHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 6677888888888888887776665532210000 01235778888888888888888888777654
Q ss_pred CCCCCHHHHHHHHHHhhc
Q 045820 206 GKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 206 g~~p~~~~~~~ll~~~~~ 223 (225)
..+ ......|+..+|+
T Consensus 968 ~~r--~~cLr~LV~~lce 983 (1139)
T 4fhn_B 968 PLK--KSCLLDFVNQLTK 983 (1139)
T ss_dssp SSC--HHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHh
Confidence 433 3455556655554
No 256
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=72.94 E-value=20 Score=27.19 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=8.5
Q ss_pred hhHHHHHHHHhCCHHHH
Q 045820 40 QAQRFVDKIKASPLKER 56 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~~a 56 (225)
+..++..+++.|+.+-+
T Consensus 168 g~T~L~~A~~~g~~~~v 184 (337)
T 4g8k_A 168 GATALMDAAEKGHVEVL 184 (337)
T ss_dssp SCCHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHCCCHHHH
Confidence 34455555555555433
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.16 E-value=31 Score=26.47 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=60.0
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCHHHHHHH----HH
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH----LMVGRVEEAYEM----LM 112 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~g~~~~a~~~----~~ 112 (225)
...+-..+..|++=+|.+.+ .++..=|.+.+++++|.+++..- .+.|+...|-++ .+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~---------------Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTL---------------RTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHH---------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHH
Confidence 33444556777777777664 44555577778888888876433 567887776665 44
Q ss_pred HHhhCCCCCCHHhHHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 045820 113 NVKNDGLKPDVYTYTAIMDGFCKVGRSN-EAMELLNEAIE 151 (225)
Q Consensus 113 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~-~a~~~~~~m~~ 151 (225)
-..+.+++++...-+-++..+.....-+ .=..+++++++
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~ 121 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNN 121 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHH
Confidence 4556788888888888887776644221 22344444443
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.12 E-value=16 Score=23.01 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHhhCC
Q 045820 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------LMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 52 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------~~~g~~~~a~~~~~~m~~~g 118 (225)
..++|..+-+.+...+. ...+--+-+..+.+.|+++.|..+.+.+ .+.|..+++...+.++..+|
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 34455555555444432 1111112223344455555555544333 56677777777777777666
Q ss_pred CCCCHHhHHH
Q 045820 119 LKPDVYTYTA 128 (225)
Q Consensus 119 ~~p~~~~~~~ 128 (225)
.|....|..
T Consensus 99 -~p~~q~Fa~ 107 (115)
T 2uwj_G 99 -DPALADFAA 107 (115)
T ss_dssp -SHHHHHHHH
T ss_pred -CHHHHHHHH
Confidence 455555544
No 259
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.68 E-value=16 Score=25.16 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 045820 105 EEAYEMLMNVKNDGLKPDVY-TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV 158 (225)
Q Consensus 105 ~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 158 (225)
+.+.++|..|.++||-.... -|-..-..+-..|++.+|..+|..-++.+-+|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 34777899999998877554 4777888888999999999999999988877643
No 260
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=71.52 E-value=19 Score=24.31 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
..+.+|.-|...|+.++|.++++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 46778888988999999999998875
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.24 E-value=16 Score=22.93 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHhhCC
Q 045820 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH-------------LMVGRVEEAYEMLMNVKNDG 118 (225)
Q Consensus 52 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------~~~g~~~~a~~~~~~m~~~g 118 (225)
..++|..+-+.+...+. ...+--+-+..+.+.|+++.|..+.+.+ .+.|..+++...+.++..+|
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 35555555555554433 2222222233345556666665555444 56677777777777777766
Q ss_pred CCCCHHhHHH
Q 045820 119 LKPDVYTYTA 128 (225)
Q Consensus 119 ~~p~~~~~~~ 128 (225)
.|....|..
T Consensus 100 -~p~~q~Fa~ 108 (116)
T 2p58_C 100 -DPRIQTFVN 108 (116)
T ss_dssp -CHHHHHHHH
T ss_pred -CHHHHHHHH
Confidence 455555544
No 262
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=70.69 E-value=19 Score=23.50 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=54.7
Q ss_pred hCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHhHH
Q 045820 50 ASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKP--DVYTYT 127 (225)
Q Consensus 50 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~ 127 (225)
...+..+.+.|..-...|. |+..+--.+-.++.+..+.+. ..++..++.+..+.+ .| .....-
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d-------------~~~GI~lLe~l~~~~-~p~~~Rd~lY 78 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDD-------------IRKGIVLLEELLPKG-SKEEQRDYVF 78 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHH-------------HHHHHHHHHHHTTTS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHH-------------HHHHHHHHHHHHhcC-CcchHHHHHH
Confidence 3444555666655555454 677776667777777665433 344555555555443 23 122223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 128 AIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 128 ~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.+--+|.|.|++++|.+.++.+.+.
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3455899999999999999999875
No 263
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=68.74 E-value=25 Score=24.83 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=7.9
Q ss_pred hhHHHHHHHHhCCHH
Q 045820 40 QAQRFVDKIKASPLK 54 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~ 54 (225)
+..++..+++.|+.+
T Consensus 44 g~t~L~~A~~~~~~~ 58 (237)
T 3b7b_A 44 QRTPLMEAAENNHLE 58 (237)
T ss_dssp CCCHHHHHHHTTCHH
T ss_pred CCCHHHHHHHhCCHH
Confidence 344555555655544
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.52 E-value=39 Score=26.22 Aligned_cols=144 Identities=13% Similarity=0.081 Sum_probs=86.2
Q ss_pred HHHhCCHHHHHHHH----HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 045820 47 KIKASPLKERIDIF----NSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPD 122 (225)
Q Consensus 47 ~~~~~~~~~a~~~~----~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 122 (225)
.++.|+...+-++- +-..+.++++|......++..+.....-+.... .-+++|.++=.+- .....=|
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~--------~fi~~ai~WS~~~-g~~~~Gd 135 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRK--------RFVKEMIDWSKKF-GDYPAGD 135 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHH--------HHHHHHHHHHHHH-SSCTTCC
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHH--------HHHHHHHHHHhhc-CCCCCCC
Confidence 34777776666554 566777899999888888888877654322111 1112333332221 1111225
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-HHhhcCCCCCHH--HHHHHHHHHHccCcHHHHHHHH
Q 045820 123 VYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-QRLEMGHIPRTI--TFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 123 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-~~~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~ 199 (225)
...-..+-..|.+.+++.+|+.-|- .|-.+++.+|..++ +....+- |... -..-.+-.|.-.+++..|..++
T Consensus 136 p~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~-~~e~dlfiaRaVL~yL~l~n~~~A~~~~ 210 (336)
T 3lpz_A 136 PELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDE-SHTAPLYCARAVLPYLLVANVRAANTAY 210 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSC-GGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5566778888999999999988773 36666667775555 4444432 2211 1333445566677888888877
Q ss_pred HHHHh
Q 045820 200 FLMYE 204 (225)
Q Consensus 200 ~~m~~ 204 (225)
+...+
T Consensus 211 ~~f~~ 215 (336)
T 3lpz_A 211 RIFTS 215 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 265
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=68.33 E-value=22 Score=23.21 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
..+.+|.-|...|+.++|.+.++++.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 35678888888999999999998875
No 266
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=66.94 E-value=15 Score=25.33 Aligned_cols=111 Identities=7% Similarity=-0.055 Sum_probs=62.4
Q ss_pred HhcCCHHHHHHHHHHHhhC-CCCCC-------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCc-cHHHHHHH-HHH
Q 045820 99 LMVGRVEEAYEMLMNVKND-GLKPD-------VYTYTAIMDGFCKVGRSNEAMELLNEAIERG-VTQ-NVVTLIQL-LQR 167 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~-g~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~t~~~l-~~~ 167 (225)
...|.++.|.-+.+.+... +..|+ ..++..+-+++...|++..|...|++..+.. .-+ +..+.+.+ +..
T Consensus 31 ~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~s 110 (167)
T 3ffl_A 31 AAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSA 110 (167)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------
T ss_pred HHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccC
Confidence 4556666666655554321 11233 2356778889999999999999999964321 111 11111111 000
Q ss_pred h---hcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 168 L---EMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 168 ~---~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
- ......+++.---+-.||.+.+++++|+.+++.+-...-.|
T Consensus 111 s~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 111 STPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred CCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 0 00122344444557899999999999999988765443333
No 267
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=66.18 E-value=27 Score=23.48 Aligned_cols=20 Identities=0% Similarity=-0.074 Sum_probs=11.4
Q ss_pred HHHHHHHHhCCHHHHHHHHH
Q 045820 42 QRFVDKIKASPLKERIDIFN 61 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~ 61 (225)
.++..+++.|+.+....+++
T Consensus 7 ~~l~~A~~~g~~~~v~~ll~ 26 (179)
T 3f6q_A 7 DDIFTQCREGNAVAVRLWLD 26 (179)
T ss_dssp CCHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34555666666665555544
No 268
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=64.86 E-value=27 Score=23.01 Aligned_cols=14 Identities=7% Similarity=0.078 Sum_probs=6.8
Q ss_pred HHHHHhcCCHHHHH
Q 045820 130 MDGFCKVGRSNEAM 143 (225)
Q Consensus 130 l~~~~~~g~~~~a~ 143 (225)
+...++.|+.+-+.
T Consensus 112 L~~A~~~~~~~~v~ 125 (165)
T 3twr_A 112 LHEAAAKGKYEICK 125 (165)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 34445556554333
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.82 E-value=23 Score=24.02 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 140 NEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 140 ~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
+++..+|..|.+.|+- .--...|......+...|++.+|.++|+.=++++-+|-.
T Consensus 82 ~dp~~if~~L~~~~IG-----------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIG-----------------TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTT-----------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCc-----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4489999999988774 244567888888888999999999999999999888854
No 270
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=63.70 E-value=42 Score=24.76 Aligned_cols=78 Identities=5% Similarity=-0.113 Sum_probs=32.0
Q ss_pred HhhhcCCCCCChhhcchhhc-----------------CcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh--H
Q 045820 15 LLVDSPSRSPSAAESLDLKE-----------------NPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD--F 75 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~ 75 (225)
..++-.+..|...+..+... .-...+..++..++..|+.+.+..++ +.|..++... -
T Consensus 17 ~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~g 92 (285)
T 3d9h_A 17 RGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLI----SQGWAVNIITADH 92 (285)
T ss_dssp -------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHH----HTTCCSCEECTTC
T ss_pred HHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCC
Confidence 55566666666655555211 12334566788888888875544444 4555444322 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 045820 76 NDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 76 ~~li~~~~~~~~~~~a~~~~~ 96 (225)
.+.+...+..|+.+-+..+++
T Consensus 93 ~t~L~~A~~~g~~~~v~~Ll~ 113 (285)
T 3d9h_A 93 VSPLHEACLGGHLSCVKILLK 113 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHCCcHHHHHHHHH
Confidence 234444556677766665554
No 271
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=63.62 E-value=24 Score=25.60 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 045820 90 TAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDV-YTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQN 157 (225)
Q Consensus 90 ~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 157 (225)
.=++++-.+++. .+++..+|..|..+||-... .-|-..-..+-..|++.+|..+|..-++.+-+|-
T Consensus 118 RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 118 RYLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp HHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred HHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 444555555443 35788999999999987755 4588888888999999999999999998887763
No 272
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=62.68 E-value=31 Score=24.22 Aligned_cols=25 Identities=8% Similarity=-0.061 Sum_probs=13.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 130 MDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 130 l~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
+...+..|+.+-+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3444555555555555555555543
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.65 E-value=29 Score=23.81 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=52.4
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 120 KPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
.-|..-...-|. |++.- ++...+|..|.+.|+- .--...|......+-..|++.+|.++|
T Consensus 60 knD~RyLklWl~-ya~~~--~~p~~if~~L~~~~IG-----------------~~~AlfY~~wA~~lE~~~~~~~A~~Iy 119 (164)
T 2wvi_A 60 YSDPRFLNLWLK-LGRLC--NEPLDMYSYLHNQGIG-----------------VSLAQFYISWAEEYEARENFRKADAIF 119 (164)
T ss_dssp TTCHHHHHHHHH-HHHHC--SCHHHHHHHHHHTTSS-----------------TTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHH-HHHhc--CCHHHHHHHHHHCCcc-----------------hhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345554444442 22222 4478899999988875 234566777788888899999999999
Q ss_pred HHHHhcCCCCCHH
Q 045820 200 FLMYEHGKIPSRT 212 (225)
Q Consensus 200 ~~m~~~g~~p~~~ 212 (225)
+.=++.+-+|-..
T Consensus 120 ~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 120 QEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHTTCBSHHH
T ss_pred HHHHHcCCCcHHH
Confidence 9999999888653
No 274
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=61.80 E-value=31 Score=23.06 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=32.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 181 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.++..+...+..-.|.++++.+.+.+...+..|...-|+.+.+.|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444455555678889999888777778888888888877766
No 275
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.78 E-value=35 Score=25.24 Aligned_cols=55 Identities=7% Similarity=-0.008 Sum_probs=27.5
Q ss_pred chhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045820 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFF 95 (225)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~ 95 (225)
...+..++..++..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+..++
T Consensus 28 d~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 28 DVHGHSASYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 344555666677777665444443 3344444333233444444555555444444
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.41 E-value=53 Score=25.18 Aligned_cols=141 Identities=13% Similarity=0.063 Sum_probs=79.9
Q ss_pred HHhCCHHHHHHH----HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CC
Q 045820 48 IKASPLKERIDI----FNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGL--KP 121 (225)
Q Consensus 48 ~~~~~~~~a~~~----~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~--~p 121 (225)
++.|+...|-++ .+-..+.+++++......++..+.....-+... ..-+.+|.++- .+.|- .-
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r--------~~fi~~ai~WS---~~~g~~~~G 132 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNL--------KDVITGMNNWS---IKFSEYKFG 132 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTH--------HHHHHHHHHHH---HHTSSCTTC
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchH--------HHHHHHHHHHH---hhcCCCCCC
Confidence 367886666654 555667788888888888888876644322110 11112223222 22221 22
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-HHhhc---CCCCCH-HH-HHHHHHHHHccCcHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL-QRLEM---GHIPRT-IT-FNNVIQALCGVGKIHKA 195 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~-~~~~~---~~~p~~-~~-~~~li~~~~~~g~~~~a 195 (225)
|......+-..|.+.|++.+|+.-|- .|-.-|...+..++ +.... |. |.. .. ..-.+-.|.-.|+...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~-~~e~dlf~~RaVL~yL~l~n~~~A 207 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIE-DSTVAEFFSRLVFNYLFISNISFA 207 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHHTTBHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHHHHHhcCHHHH
Confidence 66777888888999999999887664 12211334444444 33333 32 211 11 22234455667889999
Q ss_pred HHHHHHHHh
Q 045820 196 LLLLFLMYE 204 (225)
Q Consensus 196 ~~~~~~m~~ 204 (225)
..+++...+
T Consensus 208 ~~~~~~f~~ 216 (312)
T 2wpv_A 208 HESKDIFLE 216 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887753
No 277
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=61.30 E-value=41 Score=23.90 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=39.3
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
++.+...+|.++++.|+-.+-+|.+.|..|....-..++-+.-..|.
T Consensus 11 ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 11 ISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 34567778999999999999999999999988888888888766664
No 278
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=61.03 E-value=85 Score=27.43 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=44.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 045820 132 GFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLM 202 (225)
Q Consensus 132 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 202 (225)
-+...|+++-|+.+-.+.....- -+-.+|..|..+|...|+++.|.-.++-+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aP-------------------seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELAL-------------------DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS-------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCc-------------------hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567999999999999887542 34789999999999999999999998877
No 279
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=60.98 E-value=14 Score=26.66 Aligned_cols=31 Identities=6% Similarity=0.161 Sum_probs=18.9
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWS 71 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~ 71 (225)
..++..+++.|+.+....+++.+.+.|..++
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 3455666667777666666666666655444
No 280
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=60.44 E-value=43 Score=23.85 Aligned_cols=46 Identities=9% Similarity=0.152 Sum_probs=38.1
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
++.+...+|.++++.|+-.+-+|.+.| .|....-..++-+.-..|.
T Consensus 18 iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 18 ISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 345777789999999999999999999 8888777777777766664
No 281
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=60.33 E-value=40 Score=23.43 Aligned_cols=55 Identities=11% Similarity=0.018 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHH
Q 045820 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD--FNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~ 96 (225)
..+..++..+++.|+.+-+..++ +.|..++... -.+.+...+..|+.+.+..+++
T Consensus 23 ~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 23 RTGETALHLAARYSRSDAAKRLL----EASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCchHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 33455566666666654333333 3344333221 1123333445555555444443
No 282
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=60.16 E-value=41 Score=23.56 Aligned_cols=28 Identities=14% Similarity=-0.060 Sum_probs=19.6
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 182 VIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
-+...+..|+.+.+..+++.+.+.|..+
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3455567788888878888888776533
No 283
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=60.11 E-value=38 Score=23.10 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCC
Q 045820 137 GRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPS 210 (225)
Q Consensus 137 g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 210 (225)
++.++|.++|+.+++..-+ - ...|-....=-.+.|++.+|.+++...+..+-+|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKk------------------F-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK------------------F-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT------------------B-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred cCHHHHHHHHHHHHHHhHH------------------H-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 7899999999998876222 2 45555555555679999999999999988775554
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.86 E-value=44 Score=23.81 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=55.2
Q ss_pred CCCHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 045820 120 KPDVYTYTAIMDGFCK--VGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALL 197 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 197 (225)
+-|..-...-|.---. .++..++..+|..|...|+- .--...|......+...|++.+|.+
T Consensus 74 kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG-----------------~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIG-----------------TKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSS-----------------TTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCc-----------------HHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455443433322222 45578999999999988875 2445678888888889999999999
Q ss_pred HHHHHHhcCCCCCH
Q 045820 198 LLFLMYEHGKIPSR 211 (225)
Q Consensus 198 ~~~~m~~~g~~p~~ 211 (225)
+|+.=++++-+|-.
T Consensus 137 Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 137 LLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHTTCBSHH
T ss_pred HHHHHHHcCCccHH
Confidence 99999998888844
No 285
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=59.54 E-value=9.7 Score=25.23 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=35.4
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..++..+...+..-.|.++++.+.+.+...+..|...-|+.+.++|
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3455666666666678899999988888888888888888887776
No 286
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=59.32 E-value=25 Score=26.47 Aligned_cols=13 Identities=8% Similarity=0.279 Sum_probs=5.9
Q ss_pred HHHHHHHHcCCCc
Q 045820 144 ELLNEAIERGVTQ 156 (225)
Q Consensus 144 ~~~~~m~~~g~~p 156 (225)
++++.+.+.|..+
T Consensus 228 ~~~~~Ll~~g~~~ 240 (351)
T 3utm_A 228 QVAELLLRKGANV 240 (351)
T ss_dssp HHHHHHHHTTCCT
T ss_pred HHHHHHHHcCCCc
Confidence 3444444455443
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=58.76 E-value=52 Score=24.25 Aligned_cols=101 Identities=16% Similarity=0.049 Sum_probs=49.6
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHH------------------H
Q 045820 40 QAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD--FNDLLMALVMLNEQDTAVKFFSNH------------------L 99 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~------------------~ 99 (225)
+..++..++..|+.+-+.. +.+.|..++... -.+.+...+..|+.+-+..+++.- +
T Consensus 62 g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~ 137 (285)
T 3kea_A 62 NEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV 137 (285)
T ss_dssp TCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Confidence 4556666777776554433 334455443321 122334444556666555555431 2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNE 148 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 148 (225)
..|..+ +.+.+.+.|..+ +...-.+.+...++.|+.+-+..+++.
T Consensus 138 ~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 138 MLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 334433 333344444333 221333445566677877766666654
No 288
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=58.43 E-value=12 Score=24.48 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=33.7
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 181 NVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 181 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.++..+...+..-.|.++++.+.+.+...+..|....|+.+.+.|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344555555556678889999988877788888888888887766
No 289
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=58.21 E-value=42 Score=23.06 Aligned_cols=158 Identities=9% Similarity=0.042 Sum_probs=88.0
Q ss_pred CCCCChhhcchhhcC----cc-hhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHhcCCHHHHH
Q 045820 21 SRSPSAAESLDLKEN----PR-SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD---FNDLLMALVMLNEQDTAV 92 (225)
Q Consensus 21 ~~~~~~~~a~~~~~~----~~-~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~~~~~~a~ 92 (225)
.+.|++++...++.. .. ..+..++..++..++.+.-.++.+.+.+.|..++... ++.|..++.. +.
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~-~~----- 87 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG-GG----- 87 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH-CT-----
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CC-----
Confidence 456777766655543 12 3356678888888888878888999999998877643 3444444422 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHh---HHHHHHHHHhcCCH-HHHHHHHHHHHH-cCCCccHHHHHHHHHH
Q 045820 93 KFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYT---YTAIMDGFCKVGRS-NEAMELLNEAIE-RGVTQNVVTLIQLLQR 167 (225)
Q Consensus 93 ~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~-~~a~~~~~~m~~-~g~~p~~~t~~~l~~~ 167 (225)
.+.....++.+.+.+.|..++... .++.+...+..+.. ..-..+++.+.+ .|..++.
T Consensus 88 ---------~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~--------- 149 (186)
T 3t8k_A 88 ---------NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI--------- 149 (186)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC---------
T ss_pred ---------cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc---------
Confidence 223334455666677777665432 21334334444432 344566777777 7766433
Q ss_pred hhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCC
Q 045820 168 LEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIP 209 (225)
Q Consensus 168 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 209 (225)
.|..-.+.| ...++.|+.+...-+.+.+.+.+++.
T Consensus 150 ------~d~~G~TpL-~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 150 ------KDKWGLTAL-EFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp ------CCTTSCCHH-HHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred ------cCCCCCCHH-HHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 232233333 33456676654444444444455544
No 290
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=58.14 E-value=21 Score=20.79 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=31.3
Q ss_pred HHHHHHHHccC-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 180 NNVIQALCGVG-KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 180 ~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
..++..+...+ ..-.+.++++.+.+.+...+..|....|+.+.++|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34555555543 44557778888887776777888888887777655
No 291
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=57.16 E-value=34 Score=22.67 Aligned_cols=44 Identities=7% Similarity=-0.138 Sum_probs=31.8
Q ss_pred HHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 182 VIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 182 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
++..+...+..-.|.++++.+.+.+...+..|...-|+.+.++|
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34444444555668889999988877778888888888887766
No 292
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.06 E-value=44 Score=25.07 Aligned_cols=71 Identities=24% Similarity=0.267 Sum_probs=53.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhc--CCC
Q 045820 131 DGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEH--GKI 208 (225)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~ 208 (225)
....+.|+++++......-++..- -|...=..++.-+|-.|++++|.+=++...+. ...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P-------------------~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP-------------------KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT-------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-------------------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 456688999999988887777642 46777788899999999999999888877653 344
Q ss_pred CCHHHHHHHHHH
Q 045820 209 PSRTSHDMLIKK 220 (225)
Q Consensus 209 p~~~~~~~ll~~ 220 (225)
|-..+|..+|.+
T Consensus 66 ~~a~~yr~lI~a 77 (273)
T 1zbp_A 66 PGASQLRHLVKA 77 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455566666654
No 293
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.30 E-value=55 Score=23.51 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCCHH
Q 045820 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVS---DFNDLLMALVMLNEQD 89 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~~~~~ 89 (225)
.+..++..+++.|+.+....++ +.|..++.. .-.+.+...+..|+.+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~ 53 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED 53 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred ccchHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH
Confidence 3556777888999876555554 455544432 1123444444445543
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.91 E-value=52 Score=23.07 Aligned_cols=56 Identities=5% Similarity=-0.067 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHH
Q 045820 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD--FNDLLMALVMLNEQDTAVKFFSN 97 (225)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~ 97 (225)
..+..++..++..|+.+- ++.+.+.|..++... -.+.+...+..|+.+.+..+++.
T Consensus 44 ~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 44 NLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS 101 (241)
T ss_dssp TTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 445667888888887754 444555666554432 12344555566777666666554
No 295
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=54.42 E-value=30 Score=22.50 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHH
Q 045820 42 QRFVDKIKASPLKERIDIFNS 62 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~ 62 (225)
.++..+++.|+.+.+..+++.
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT
T ss_pred hHHHHHHHhCCHHHHHHHHHh
Confidence 456667777777777777666
No 296
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=54.16 E-value=7.6 Score=21.66 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHh-hc
Q 045820 193 HKALLLLFLMYEHGKIPSRTSHDMLIKKL-DQ 223 (225)
Q Consensus 193 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~ 223 (225)
++|.+.|.+|.+..-.+...||...++.+ ++
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~ 34 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTR 34 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccC
Confidence 67888888888654455667888888877 44
No 297
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=53.09 E-value=28 Score=25.37 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 045820 39 LQAQRFVDKIKASPLKERIDIFNSIKKDG 67 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~a~~~~~~m~~~g 67 (225)
.+..++..+++.|+.+....+++...+.+
T Consensus 12 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 12 YDRRSIFDAVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp CCHHHHHHHHHTTCSSTTTTHHHHHHHSC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHHHhhcc
Confidence 34455555556666655555555554443
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.97 E-value=40 Score=24.45 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 140 NEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 140 ~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
++...+|..|...|+- .--...|......+...|++.+|.++|+.=++++-+|-.
T Consensus 131 ~~p~~if~~L~~~~IG-----------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIG-----------------QESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCS-----------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcc-----------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 5788999999988874 234567888888888999999999999999998888843
No 299
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=52.33 E-value=69 Score=23.71 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=54.0
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCc---HHHH
Q 045820 119 LKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGK---IHKA 195 (225)
Q Consensus 119 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~a 195 (225)
..|....|...+...+..|++.++...+ -|-..+|..+-+.......|+ ..|..-|..|..-.. ++..
T Consensus 132 ~~pat~aYt~~l~~~a~~g~~~~~laAl--------~pC~w~Y~~ig~~l~~~~~~~-~~Y~~WI~~y~~~df~~~v~~~ 202 (263)
T 2qcx_A 132 PSPTAYSFTSHMYRSVLSGNFAEILAAL--------LPCYWLYYEVGEKLLHCDPGH-PIYQKWIGTYGGDWFRQQVEEQ 202 (263)
T ss_dssp CCHHHHHHHHHHHHHHTTTCHHHHHHHH--------HHHHHHHHHHHHHHTTCCCCS-HHHHHHHHHHSSHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHHHHHHHHHHHHhccCCC-cHHHHHHHHhCCHHHHHHHHHH
Confidence 3456777999998889999887765544 344445554444443333355 778888888887532 3333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 045820 196 LLLLFLMYEHGKIPSRTSHDMLIKKLD 222 (225)
Q Consensus 196 ~~~~~~m~~~g~~p~~~~~~~ll~~~~ 222 (225)
.++++++.+ .++......+..+|.
T Consensus 203 ~~lld~l~~---~~s~~~~~~l~~~F~ 226 (263)
T 2qcx_A 203 INRFDELAE---NSTEEVRAKMKENFV 226 (263)
T ss_dssp HHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHh---hCCHHHHHHHHHHHH
Confidence 444444432 245555555555543
No 300
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=52.29 E-value=15 Score=28.36 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=37.9
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 110 MLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 110 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
++..+.+.|+.|...++.=++..|++.=.++.+.++|+.+...|.
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~ 259 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE 259 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC
Confidence 555667778999999988888888888889999999999988774
No 301
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=51.32 E-value=27 Score=19.31 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=11.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKP 121 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p 121 (225)
..|+++.|...+-+|...+..|
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSC
T ss_pred cCCCHHHHHHHHHcCcCCCCCC
Confidence 3455555555555555444444
No 302
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=51.11 E-value=13 Score=20.66 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=17.9
Q ss_pred hcCCHHHHHHHHHHHhhCC-CCCCH
Q 045820 100 MVGRVEEAYEMLMNVKNDG-LKPDV 123 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g-~~p~~ 123 (225)
..-+++.|...|.+++..| |+|+.
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 4578899999999988655 55554
No 303
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.86 E-value=93 Score=24.82 Aligned_cols=90 Identities=13% Similarity=-0.028 Sum_probs=58.3
Q ss_pred HhcCCHHHHHHHHHHHhhC--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCH
Q 045820 99 LMVGRVEEAYEMLMNVKND--GLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRT 176 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~ 176 (225)
.+.|++++|.++|.++... +..--+..+-.+|..+...+++..+...+.+....-.. +..|+.
T Consensus 142 ~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~---------------~~d~~~ 206 (429)
T 4b4t_R 142 AQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK---------------GGDWER 206 (429)
T ss_dssp HHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT---------------CCCTHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc---------------CCCHHH
Confidence 5667888888888887753 33334566778889999999999999998887643111 111221
Q ss_pred ----HHHHHHHHHHHccCcHHHHHHHHHHHHhc
Q 045820 177 ----ITFNNVIQALCGVGKIHKALLLLFLMYEH 205 (225)
Q Consensus 177 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 205 (225)
..|..++ +...+++.+|.+.|-+....
T Consensus 207 ~~~lk~~~gl~--~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 207 RNRYKTYYGIH--CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHHG--GGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHhChHHHHHHHHHHHhcc
Confidence 1233332 33568888888888777654
No 304
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=50.54 E-value=15 Score=24.15 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=32.2
Q ss_pred HHHHHHHccC-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 181 NVIQALCGVG-KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 181 ~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.++..+...+ ..-.|.++++.+.+.+...+..|...-|+.+.++|
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3445555554 55678899999988887788888888888777655
No 305
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=49.45 E-value=70 Score=22.96 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
+.+...+|.++++.|+-.+-+|.+.|..|....-..++-+.-..|.
T Consensus 40 SAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 40 SAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3566677999999999999999999999988888888888876664
No 306
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=48.89 E-value=41 Score=29.37 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=42.5
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
..|+++.|+.+-++-... .+-+..+|-.|..+|.+.|+++.|+-.++.+
T Consensus 349 ~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 349 NRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 679999999998887665 3446889999999999999999999998877
No 307
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=48.70 E-value=32 Score=22.86 Aligned_cols=45 Identities=11% Similarity=-0.127 Sum_probs=23.3
Q ss_pred HhhhcCCCCCChhhcchhhcC------cchhhhHHHHHHHHhCCHHHHHHH
Q 045820 15 LLVDSPSRSPSAAESLDLKEN------PRSLQAQRFVDKIKASPLKERIDI 59 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~------~~~~~~~~l~~~~~~~~~~~a~~~ 59 (225)
..+..-++.|+.+.+..++.. ....+..++..+++.|+.+-+..+
T Consensus 16 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 66 (169)
T 2y1l_E 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVL 66 (169)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 334444555666555444433 223445566667777765544333
No 308
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=48.33 E-value=1.1e+02 Score=24.74 Aligned_cols=116 Identities=16% Similarity=0.076 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhh--------CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CccHHHHHHHHHHh
Q 045820 104 VEEAYEMLMNVKN--------DGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV-------TQNVVTLIQLLQRL 168 (225)
Q Consensus 104 ~~~a~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-------~p~~~t~~~l~~~~ 168 (225)
.++...++..... .++..+......+... -.|+..++..+++.+..... ..+......++...
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 4455555555433 2344566666666655 46899999999988875432 23333333333111
Q ss_pred hcCCCCCHHHHHHHHHHHH---ccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 169 EMGHIPRTITFNNVIQALC---GVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 169 ~~~~~p~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
......+....-.+|+++. +.++.+.|..++..|.+.|..|....-..+..+.
T Consensus 245 ~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 245 SARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1111112222333455554 4689999999999999999887766555555543
No 309
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.31 E-value=90 Score=24.44 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
..+.+|.=|...|+.++|.++++++..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~ 245 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEV 245 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccC
Confidence 468999999999999999999999863
No 310
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.15 E-value=18 Score=24.25 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=33.2
Q ss_pred HHHHHHHccC-cHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 181 NVIQALCGVG-KIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 181 ~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.++..+...+ ..-.|.++++.+.+.+...+..|...-|+.+.++|
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444 55668899999988887888888888888887766
No 311
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.09 E-value=1.1e+02 Score=24.58 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH------------------------HhcCCHHHHHHHHHHHh----hCCCCCCH--H
Q 045820 75 FNDLLMALVMLNEQDTAVKFFSNH------------------------LMVGRVEEAYEMLMNVK----NDGLKPDV--Y 124 (225)
Q Consensus 75 ~~~li~~~~~~~~~~~a~~~~~~~------------------------~~~g~~~~a~~~~~~m~----~~g~~p~~--~ 124 (225)
...|...+-..|++.+|..++.++ ...+++..|..++.+.. +....|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 355777888889999999988877 56789999998888864 23333433 3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
-|...+..+...+++.+|...|.+.-.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 477788888889999999888877654
No 312
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=46.85 E-value=60 Score=21.43 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=46.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045820 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELL 146 (225)
Q Consensus 67 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 146 (225)
+-.|+..|--.+--++.+..+. .+..++..++++..+.+..-.....--+--|+.|.|++++|.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~-------------~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDV-------------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCH-------------HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCH-------------HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4456666655566666666544 234556666666655431112333445566999999999999999
Q ss_pred HHHHHc
Q 045820 147 NEAIER 152 (225)
Q Consensus 147 ~~m~~~ 152 (225)
+.+.+.
T Consensus 102 d~lL~~ 107 (134)
T 3o48_A 102 DTLFEH 107 (134)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 998864
No 313
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=45.64 E-value=74 Score=22.13 Aligned_cols=54 Identities=6% Similarity=-0.087 Sum_probs=28.0
Q ss_pred chhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCCHHHHHHHH
Q 045820 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVS---DFNDLLMALVMLNEQDTAVKFF 95 (225)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~ 95 (225)
...+..++..++..|+.+-... +.+.|..++.. -++. +...+..|+.+-+..++
T Consensus 37 ~~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll 93 (231)
T 3aji_A 37 DQDSRTALHWACSAGHTEIVEF----LLQLGVPVNDKDDAGWSP-LHIAASAGXDEIVKALL 93 (231)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHH----HHHTTCCSCCCCTTSCCH-HHHHHHHTCHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHH----HHHhCCCCCCcCCCCCCH-HHHHHHcCHHHHHHHHH
Confidence 3445667777888887654444 44445544432 2333 33444555555444443
No 314
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=45.44 E-value=58 Score=24.36 Aligned_cols=99 Identities=11% Similarity=0.096 Sum_probs=45.8
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHH-----------------Hhc
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNWSVS--DFNDLLMALVMLNEQDTAVKFFSNH-----------------LMV 101 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~-----------------~~~ 101 (225)
..++..+++.|+.+....++.. .+..++.. .-.+.+...+..|+.+-+..+++.- +..
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 101 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY 101 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred chhHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC
Confidence 4456666666666665555432 22222111 1123344444556655555544321 445
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHH
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDVY---TYTAIMDGFCKVGRSNEAMELLN 147 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~ 147 (225)
|+.+-+. .+.+.|..++.. -++. +...++.|+.+-+..+++
T Consensus 102 g~~~iv~----~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~ 145 (351)
T 3utm_A 102 GHYEVTE----LLLKHGACVNAMDLWQFTP-LHEAASKNRVEVCSLLLS 145 (351)
T ss_dssp TCHHHHH----HHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHH----HHHHCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHH
Confidence 5544333 334445444332 2333 444556777665544443
No 315
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=45.32 E-value=22 Score=23.12 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=52.1
Q ss_pred cCCCCCChhhcchhhcCcchhhhHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045820 19 SPSRSPSAAESLDLKENPRSLQAQRFVDK-IKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKF 94 (225)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~l~~~-~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~ 94 (225)
.|.+++++.+++.+..+-+ -|...+.. ..+++.+-|.++++...+.| +...|.+++..|-..=+.|-++++
T Consensus 15 ~ykkN~rw~qSI~L~KkDk--LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 15 VPRGSHMWKQSVELAKKDS--LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSSCCCCSSCCCCCSCCC--CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred hhhccccHHHHHHHHHhcc--cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4778888888887776522 24444443 36899999999999998887 777888999988776666655543
No 316
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.78 E-value=16 Score=24.37 Aligned_cols=34 Identities=6% Similarity=-0.162 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCC
Q 045820 192 IHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 192 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 225 (225)
.-.|.++++.+.+.+...+..|...-|+.+.++|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4568889999988887788888888888777655
No 317
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=43.55 E-value=19 Score=24.52 Aligned_cols=46 Identities=7% Similarity=-0.021 Sum_probs=32.0
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhhcCC
Q 045820 180 NNVIQALCGVGKIHKALLLLFLMYEH--GKIPSRTSHDMLIKKLDQQP 225 (225)
Q Consensus 180 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g 225 (225)
..++..+...+..-.|.++++.+.+. +...+..|...-|+.+.++|
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555666788888888876 66777777777777777665
No 318
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=42.98 E-value=13 Score=26.82 Aligned_cols=54 Identities=7% Similarity=-0.120 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh----------------HHHHHHHHHhcCCHHHHHHHHH
Q 045820 39 LQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD----------------FNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~----------------~~~li~~~~~~~~~~~a~~~~~ 96 (225)
.+..++..++..|+.+-+. .+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 92 ~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 92 RGQTALHIAIERRCKHYVE----LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp ESBCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHH----HHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 5566888888888876444 4455676666543 3345555556677666665555
No 319
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=42.95 E-value=91 Score=22.40 Aligned_cols=21 Identities=5% Similarity=-0.132 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHhCCHHHHHHH
Q 045820 39 LQAQRFVDKIKASPLKERIDI 59 (225)
Q Consensus 39 ~~~~~l~~~~~~~~~~~a~~~ 59 (225)
.+..++..++..|+.+-+..+
T Consensus 35 ~g~t~L~~A~~~g~~~~v~~L 55 (261)
T 2xai_A 35 DHVSPLHEACLGGHLSCVKIL 55 (261)
T ss_dssp TCCCHHHHHHHHTCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHH
Confidence 345566666666765443333
No 320
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=42.48 E-value=99 Score=24.20 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=13.3
Q ss_pred HHHHHccCcHHHHHHHHHHHHhcCCCCCH
Q 045820 183 IQALCGVGKIHKALLLLFLMYEHGKIPSR 211 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 211 (225)
+...+..|+.+ +++.+.+.|..|+.
T Consensus 183 L~~A~~~~~~~----~v~~Ll~~g~~~~~ 207 (437)
T 1n11_A 183 LHVAVHHNNLD----IVKLLLPRGGSPHS 207 (437)
T ss_dssp HHHHHHTTCHH----HHHHHGGGTCCSCC
T ss_pred HHHHHHcCCHH----HHHHHHhCCCCCCC
Confidence 34445556654 55555666655543
No 321
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=41.78 E-value=47 Score=18.82 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIH 193 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 193 (225)
.++-+++.+++-.-++++...+++..+.|. .+..+|---++..++...+.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-------------------I~l~~ylK~vR~LaReQF~~ 53 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-------------------IPLDTFVKQGRELARQQFLV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------------------SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------------CCHHHHHHHHHHHHHHHHHH
Confidence 577888899998889999999999999986 56666766666666554433
No 322
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=41.77 E-value=68 Score=20.61 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=32.8
Q ss_pred HHHHHH-HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045820 53 LKERID-IFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM 100 (225)
Q Consensus 53 ~~~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 100 (225)
.++-+. +|+.+....+.|+...--.-|..+...++++.|.++...+..
T Consensus 41 ~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 41 ISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333 567777777777666555566667777888888888887733
No 323
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.20 E-value=1.2e+02 Score=23.10 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=45.2
Q ss_pred chhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHH---------------H
Q 045820 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD--FNDLLMALVMLNEQDTAVKFFSNH---------------L 99 (225)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~---------------~ 99 (225)
+..+..++..++..|+.+.+..++ +.|..++... -.+.+...+..|+.+-+..+++.- +
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~ 92 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAV 92 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHH
Confidence 455666777777888766555544 3454444322 123444555567766666555432 5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCC
Q 045820 100 MVGRVEEAYEMLMNVKNDGLKPD 122 (225)
Q Consensus 100 ~~g~~~~a~~~~~~m~~~g~~p~ 122 (225)
..|+.+-+..+++.-.+.|..++
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HcCCHHHHHHHHHhccccCCCHH
Confidence 56666666666665444344433
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=40.54 E-value=66 Score=24.51 Aligned_cols=79 Identities=15% Similarity=0.073 Sum_probs=46.6
Q ss_pred HhhhcCCCCCChhhcchhhcC------cchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 045820 15 LLVDSPSRSPSAAESLDLKEN------PRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~------~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 88 (225)
..+..-++.|+.+-+..++.. ....+..++..++..|+.+-+.. +.+.|..++...-.+.+...+..|+.
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~ 97 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY----LASVGEVHSLWHGQKPIHLAVMANKT 97 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHH----HHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHH----HHHCCCCccccCCCCHHHHHHHcCCH
Confidence 344444555666555555443 33445667888888887755444 44445555543333455555677888
Q ss_pred HHHHHHHHH
Q 045820 89 DTAVKFFSN 97 (225)
Q Consensus 89 ~~a~~~~~~ 97 (225)
+-+..+++.
T Consensus 98 ~~v~~Ll~~ 106 (364)
T 3ljn_A 98 DLVVALVEG 106 (364)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877777776
No 325
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=39.82 E-value=84 Score=21.10 Aligned_cols=18 Identities=11% Similarity=0.278 Sum_probs=10.3
Q ss_pred HHHHHHHhCCHHHHHHHH
Q 045820 43 RFVDKIKASPLKERIDIF 60 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~~~ 60 (225)
.|+.+++.|+.+.+..++
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll 24 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLI 24 (169)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 455666666665554443
No 326
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=39.16 E-value=92 Score=22.33 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHH
Q 045820 38 SLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD--FNDLLMALVMLNEQDTAVKFF 95 (225)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~ 95 (225)
..+..++..++..|+.+-+.. +.+.|..++... -.+.+...+..|+.+.+..++
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 98 (282)
T 1oy3_D 43 DLGQTALHLAAILGEASTVEK----LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98 (282)
T ss_dssp TTSCCHHHHHHHHTCHHHHHH----HHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHS
T ss_pred CCCCCHHHHHHHcCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhh
Confidence 445667777777777554433 444565554322 122334444556665554444
No 327
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=37.65 E-value=71 Score=23.37 Aligned_cols=89 Identities=15% Similarity=0.214 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHH-----------------HhcCCHHHHHHHHHHHhhCCC
Q 045820 59 IFNSIKKDGTNWSVSDF--NDLLMALVMLNEQDTAVKFFSNH-----------------LMVGRVEEAYEMLMNVKNDGL 119 (225)
Q Consensus 59 ~~~~m~~~g~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~-----------------~~~g~~~~a~~~~~~m~~~g~ 119 (225)
++..+.+.|..+|...- .+-+...+..|+.+-+..+++.- ...+..+ +.+.+.+.|.
T Consensus 68 ~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~----~~~~Ll~~g~ 143 (269)
T 4b93_B 68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ----VVKCLLDSNA 143 (269)
T ss_dssp -------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTC
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHH----HHHHHHHCCC
Confidence 34445666665544321 12333444566666555554322 2333333 3333445565
Q ss_pred CCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 045820 120 KPDVYT---YTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156 (225)
Q Consensus 120 ~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 156 (225)
.|+... ++.|. ..++.|+.+-+..++ +.|..+
T Consensus 144 ~~n~~d~~g~TpL~-~A~~~g~~~~v~~Ll----~~gadv 178 (269)
T 4b93_B 144 KPNKKDLSGNTPLI-YACSGGHHELVALLL----QHGASI 178 (269)
T ss_dssp CSCCCCTTCCCHHH-HHHHTTCGGGHHHHH----HTTCCT
T ss_pred CCCCCCCCCCCHHH-HHHHCCCHHHHHHHH----HCCCCC
Confidence 554332 33443 445667766544443 445543
No 328
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=37.10 E-value=1.6e+02 Score=23.42 Aligned_cols=104 Identities=12% Similarity=0.029 Sum_probs=69.3
Q ss_pred HHhCCHHHHHHHHHHHHhc-CCC---CChhhHHHHHHHHHhcC-CHHHHHHHHHHH------------------------
Q 045820 48 IKASPLKERIDIFNSIKKD-GTN---WSVSDFNDLLMALVMLN-EQDTAVKFFSNH------------------------ 98 (225)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~-g~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~~------------------------ 98 (225)
.+.|+.++...++...+.- +.- -.......+|+.+.... ..+.-.++..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~ 109 (394)
T 3txn_A 30 KQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALY 109 (394)
T ss_dssp HHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999998877543 111 13444667777776643 233333332222
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP-----DVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
...|++.+|.+++.++.+.--.. -+..|-.-+..|...+++.++...+.....
T Consensus 110 ~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 110 FDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 67899999999998887631121 234577788889999999999999987754
No 329
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=36.84 E-value=59 Score=19.58 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=27.2
Q ss_pred HHHHHhcCCHHHHHHHHHHH----------------HhcCCHHHHHHHHHHHhhCCCCCCH
Q 045820 79 LMALVMLNEQDTAVKFFSNH----------------LMVGRVEEAYEMLMNVKNDGLKPDV 123 (225)
Q Consensus 79 i~~~~~~~~~~~a~~~~~~~----------------~~~g~~~~a~~~~~~m~~~g~~p~~ 123 (225)
+.++++.-+++.-.+++.++ ...-+-.+..++...|.+.|+.|+.
T Consensus 17 LRA~arel~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~ee 77 (86)
T 3nr7_A 17 LRAQARESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNE 77 (86)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 55666666666666665555 2223334556666777778887754
No 330
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=36.08 E-value=1.2e+02 Score=25.64 Aligned_cols=82 Identities=10% Similarity=0.003 Sum_probs=49.9
Q ss_pred HHhcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHh
Q 045820 63 IKKDGTN-WSVSDFNDLLMALVMLNEQDTAVKFFSN-----HLMVGRVEEAYEMLMNVKNDGLKPD-VYTYTAIMDGFCK 135 (225)
Q Consensus 63 m~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~-----~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 135 (225)
+.+...+ -|..+|-..+.-|...|......+++++ +.++--|+-..-+.......+..++ ...+-.++.-.++
T Consensus 18 l~e~~~~~~d~~~f~~~~~~~l~~g~~~~l~eilqDe~n~~l~~~igWdLv~~lv~~l~~~~~~~~~~~~s~~iL~~la~ 97 (596)
T 4f52_E 18 LEEQDFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQNEKNKVIIKNMGWNLVGPVVRCLLCKDKEDSKRKVYFLIFDLLVK 97 (596)
T ss_dssp CC---------CHHHHHHHHHHSSSCSHHHHHHHTTCTTHHHHHHTGGGGHHHHHHHHHTSCCCSSSTHHHHHHHHHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHcCcccHHHHHHHHhCcchhHHHHHcCcccHHHHHHHHhhccccccchhHHHHHHHHHHH
Confidence 3344444 3677788888888888888888887755 4555556666555555544444454 3567778888888
Q ss_pred cCCHHHHHH
Q 045820 136 VGRSNEAME 144 (225)
Q Consensus 136 ~g~~~~a~~ 144 (225)
.|+..+..-
T Consensus 98 lcnPrEvil 106 (596)
T 4f52_E 98 LCNPKELLL 106 (596)
T ss_dssp HSCGGGHHH
T ss_pred hCCHHHHHH
Confidence 888777633
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.88 E-value=1e+02 Score=21.00 Aligned_cols=53 Identities=6% Similarity=0.068 Sum_probs=39.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC--CHHhHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 045820 99 LMVGRVEEAYEMLMNVKNDGLKP--DVYTYTAIMD------GFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 99 ~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~------~~~~~g~~~~a~~~~~~m~~ 151 (225)
...|++-+|.++|+..-...-.+ +...|-.||. -+.+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45589999999999986654445 4455666666 33567999999999998865
No 332
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=34.90 E-value=1.1e+02 Score=21.13 Aligned_cols=54 Identities=9% Similarity=-0.069 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 96 (225)
.++..+++.|+.+....+++.-...--.++..-++.| ...+..|+.+.+..+++
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~ 61 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTEIVEFLLQ 61 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCHHHHHHHHH
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcHHHHHHHHH
Confidence 4577788999999888887654332122333334444 44455666655554443
No 333
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=34.41 E-value=41 Score=19.59 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=31.0
Q ss_pred CChhhcchhhcCcchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 045820 24 PSAAESLDLKENPRSLQAQRFVDKIKASPLKERIDIFNSIKKDGT 68 (225)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~ 68 (225)
..+++|.++..+....+...+-..++-| +..|-++.++|.+.|+
T Consensus 10 ~Ly~~A~~~V~~~~~aS~S~lQR~lrIG-YnRAArlid~lE~~Gi 53 (73)
T 2ve8_A 10 PLYDEAVRFVTESRRASISAVQRKLKIG-YNRAARMIEAMEMAGV 53 (73)
T ss_dssp TTHHHHHHHHHHHCCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHccC-hHHHHHHHHHHHHCCc
Confidence 4466777766665555555555555554 7788899999999986
No 334
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=33.88 E-value=1.6e+02 Score=22.45 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=40.2
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
+++..+.+.|+.|...++.-++..|++.=.++.+.++|+.....|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 45666778899999999999999999888899999999999988865
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.68 E-value=1e+02 Score=20.39 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=39.1
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHH-HHHHHHHHhhcCC
Q 045820 112 MNVKNDGLKPDVYTYTAIMDGFCKVG-RSNEAMELLNEAIERGVTQNVV-TLIQLLQRLEMGH 172 (225)
Q Consensus 112 ~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~~ 172 (225)
+.+++.|++++..=. .++..+...+ ..-.|.++++.+++.+...+.. +|.+|=.+.+.|+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 346778887766443 3455665665 6677999999998876554444 5666655555553
No 336
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=33.31 E-value=57 Score=23.35 Aligned_cols=56 Identities=11% Similarity=-0.009 Sum_probs=30.6
Q ss_pred chhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHH
Q 045820 37 RSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSD--FNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~ 96 (225)
...+..++..+++.|+.+-+..+ .+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 54 d~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 111 (253)
T 1yyh_A 54 DRTGETALHLAARYSRSDAAKRL----LEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111 (253)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 34456678888888886655444 44565554332 1233444445566655554443
No 337
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=32.60 E-value=1.6e+02 Score=22.11 Aligned_cols=106 Identities=8% Similarity=0.023 Sum_probs=69.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCHHHHHHHHHH----------H
Q 045820 46 DKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLM-VGRVEEAYEMLMN----------V 114 (225)
Q Consensus 46 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~g~~~~a~~~~~~----------m 114 (225)
..++.|++++++.....-.+.. +-|...-..++..+|-.|++++|..-++...+ ..+....-.+|.. +
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~v 84 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 84 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Confidence 4568899999998876655552 55888888999999999999999988776622 1122222222222 2
Q ss_pred hhCCCCC-----CHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHc
Q 045820 115 KNDGLKP-----DVYTYTAIMDGFCK--VGRSNEAMELLNEAIER 152 (225)
Q Consensus 115 ~~~g~~p-----~~~~~~~ll~~~~~--~g~~~~a~~~~~~m~~~ 152 (225)
-..+-.| ...-...++.+... .|+.++|..+-.+..+.
T Consensus 85 faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 85 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 2333333 22345566666654 48999999998887654
No 338
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.91 E-value=1.1e+02 Score=20.13 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=38.3
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHhhcCC
Q 045820 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV-VTLIQLLQRLEMGH 172 (225)
Q Consensus 112 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~ 172 (225)
+.+++.|++++..- ..++..+...+ .-.|.++++.+++.+...+. .+|++|=.+.+.|+
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34667888876643 33455555556 66899999999987765554 45666665555553
No 339
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=31.89 E-value=2.2e+02 Score=23.88 Aligned_cols=89 Identities=8% Similarity=-0.042 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 045820 86 NEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLL 165 (225)
Q Consensus 86 ~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~ 165 (225)
.-|+-|..++.. +...+.+.......++..+=.--+..--.-++..|.+.|-.+.|..+...+-..-+.
T Consensus 480 sLW~vgI~yL~~-~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~---------- 548 (570)
T 3f3f_C 480 ELWPVAIGLIAL-SATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS---------- 548 (570)
T ss_dssp TTHHHHHHHHHH-CSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------
T ss_pred cchhHHHHHHhc-CCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH----------
Confidence 446777777764 344556666667777665422224456777899999999999999999998766542
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHccCcHHHH
Q 045820 166 QRLEMGHIPRTITFNNVIQALCGVGKIHKA 195 (225)
Q Consensus 166 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 195 (225)
+-..| .-+..|+++|++++.
T Consensus 549 ---------~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 549 ---------AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp ------------------------------
T ss_pred ---------CccHH-HHHHHHHHcCChhhc
Confidence 33455 556788888888764
No 340
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.23 E-value=61 Score=21.22 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=21.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHhhcC
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNVV-TLIQLLQRLEMG 171 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~ 171 (225)
++..+...+..-.|.++++.+++.+...+.. +|+.|=.+.+.|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 4444444444555666666666554443332 344444444333
No 341
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=30.91 E-value=1.2e+02 Score=20.06 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=50.3
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 045820 120 KPDVYTYTAIMDGFCKVGR---SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKAL 196 (225)
Q Consensus 120 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 196 (225)
.|+..|-=..-.++++..+ ..++..++++..+.+-. -.....-.|--|+.+.|++++|.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~------------------~~Rd~LYyLAvg~yklgdY~~Ar 98 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES------------------RRRECLYYLTIGCYKLGEYSMAK 98 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG------------------GHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc------------------hhHHHHHHHHHHHHHhhhHHHHH
Confidence 4566553334556677764 45688888888775521 13455666778999999999999
Q ss_pred HHHHHHHhcCCCCCHH
Q 045820 197 LLLFLMYEHGKIPSRT 212 (225)
Q Consensus 197 ~~~~~m~~~g~~p~~~ 212 (225)
+..+.+.+. .|+-.
T Consensus 99 ~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 99 RYVDTLFEH--ERNNK 112 (134)
T ss_dssp HHHHHHHTT--CTTCH
T ss_pred HHHHHHHhh--CCCCH
Confidence 999999863 56543
No 342
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=30.47 E-value=1.5e+02 Score=21.22 Aligned_cols=53 Identities=9% Similarity=0.057 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 045820 103 RVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQ 156 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 156 (225)
..+....+++.+.+.|.--|..--.+.+....+.+.+ ....+-.++...|+.+
T Consensus 91 ~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 91 PEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGE 143 (221)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCH
Confidence 4566777888888888765555555666666552222 3566677777888764
No 343
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.38 E-value=1.1e+02 Score=19.62 Aligned_cols=44 Identities=9% Similarity=-0.081 Sum_probs=33.2
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
-+|+.+.+..+.|++..-=.-|..+...++++.|..+...+...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 45666777778777766555566778889999999999887753
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.88 E-value=76 Score=20.43 Aligned_cols=43 Identities=21% Similarity=0.151 Sum_probs=21.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHhhcC
Q 045820 129 IMDGFCKVGRSNEAMELLNEAIERGVTQNV-VTLIQLLQRLEMG 171 (225)
Q Consensus 129 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~ 171 (225)
++..+...+..-.|.++++.+++.+...+. .+|+.|=.+.+.|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444444555555666666666655433333 2444444443333
No 345
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.42 E-value=1.9e+02 Score=22.03 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
.+.+|.-|...|+.++|.++++++..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~ 194 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV 194 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 67899999999999999999999863
No 346
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=29.28 E-value=98 Score=21.44 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
|....++-++..++.-.-.+.++..+.+..+.| +.+..+|---++.++|
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELAR 157 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 666778999999999999999999999999988 4788888777777765
No 347
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=28.79 E-value=2.1e+02 Score=22.48 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=45.3
Q ss_pred CCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 045820 121 PDVYTYTAIMDGFCKVGR--SNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLL 198 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 198 (225)
++..||..+|......++ .+++..+++.+.+-.+ ++...=..|+..+.+.-..++...+
T Consensus 21 ~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~-------------------~~~QiaAfL~Alr~kGet~eEi~g~ 81 (377)
T 3r88_A 21 ASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNA-------------------RPAQIAAFAVAMTMKAPTADEVGEL 81 (377)
T ss_dssp ---CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCS-------------------CHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC-------------------CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 355689999999988775 5788999998887444 4455555555555666667777777
Q ss_pred HHHHHhcC
Q 045820 199 LFLMYEHG 206 (225)
Q Consensus 199 ~~~m~~~g 206 (225)
.+-|++.+
T Consensus 82 ~~am~~~~ 89 (377)
T 3r88_A 82 AGVMLSHA 89 (377)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 77776654
No 348
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.78 E-value=2e+02 Score=22.10 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=17.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHH
Q 045820 43 RFVDKIKASPLKERIDIFNSIK 64 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~~~~~m~ 64 (225)
.+-.++..|+.++|...++++.
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHHcC
Confidence 3444668899999999988886
No 349
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.50 E-value=2.5e+02 Score=23.26 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH-----------------------HhcCCHHHHHHHHHHHh
Q 045820 72 VSDFNDLLMALVMLNEQDTAVKFFSNH-----------------------LMVGRVEEAYEMLMNVK 115 (225)
Q Consensus 72 ~~~~~~li~~~~~~~~~~~a~~~~~~~-----------------------~~~g~~~~a~~~~~~m~ 115 (225)
...+|.++..|...+.++.|..+..+. .-.+++.+|.+.|....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455888888888889898888888766 44566777766666543
No 350
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.50 E-value=1.3e+02 Score=20.06 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCccHH
Q 045820 91 AVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR--SNEAMELLNEAIERGVTQNVV 159 (225)
Q Consensus 91 a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 159 (225)
...++++....|+.++|.++++++..-. -....++.++..++-+.++ .+.+..++..+.+.|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3345555566777788888877776211 1133455666666666432 456777788887777654333
No 351
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.20 E-value=2.3e+02 Score=22.73 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=30.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 045820 44 FVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNE 87 (225)
Q Consensus 44 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~ 87 (225)
+...++.++.+.|+..+.+|.+.|..|....-..++.+.-.-|.
T Consensus 262 l~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 262 LHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 44455677888888888888888877776666666666655553
No 352
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=28.16 E-value=1.9e+02 Score=21.70 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=39.7
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 045820 109 EMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVT 155 (225)
Q Consensus 109 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 155 (225)
+++..+.+.|+.|...++.=++..+++.=.++.+.++|+.....|..
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~ 221 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLN 221 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcH
Confidence 35556667789999999999999999888899999999999988854
No 353
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=27.90 E-value=1.4e+02 Score=25.27 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=58.1
Q ss_pred HhhCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCccHHHHHHHHHHh-hcCCCCC-HHHHHHHHHHH
Q 045820 114 VKNDGLKP-DVYTYTAIMDGFCKVGRSNEAMELLNEA----IERGVTQNVVTLIQLLQRL-EMGHIPR-TITFNNVIQAL 186 (225)
Q Consensus 114 m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~t~~~l~~~~-~~~~~p~-~~~~~~li~~~ 186 (225)
+++...+| |..+|-..+.-|...|......+++.+= .-..+.+|.+ ..++.+. ..+..++ ...+..++.-.
T Consensus 18 l~e~~~~~~d~~~f~~~~~~~l~~g~~~~l~eilqDe~n~~l~~~igWdLv--~~lv~~l~~~~~~~~~~~~s~~iL~~l 95 (596)
T 4f52_E 18 LEEQDFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQNEKNKVIIKNMGWNLV--GPVVRCLLCKDKEDSKRKVYFLIFDLL 95 (596)
T ss_dssp CC---------CHHHHHHHHHHSSSCSHHHHHHHTTCTTHHHHHHTGGGGH--HHHHHHHHTSCCCSSSTHHHHHHHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHcCcccHHHHHHHHhCcchhHHHHHcCcccH--HHHHHHHhhccccccchhHHHHHHHHH
Confidence 44555555 7889999999999999999999998662 2112222222 1222322 2222343 46888899999
Q ss_pred HccCcHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHh
Q 045820 187 CGVGKIHKALL-LLFLMYEHGKIPSRTSHDMLIKKL 221 (225)
Q Consensus 187 ~~~g~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~ 221 (225)
++.|++.+.+- +++.+.+..-.-...++..|+.++
T Consensus 96 a~lcnPrEvil~llE~le~~~~~~~~~~f~~LL~~L 131 (596)
T 4f52_E 96 VKLCNPKELLLGLLELIEEPSGKQISQSILLLLQPL 131 (596)
T ss_dssp HHHSCGGGHHHHHGGGGTSCCGGGHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhcccCcchHHHHHHHHHHH
Confidence 99999987643 333332221111135566666655
No 354
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.73 E-value=1.1e+02 Score=18.65 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045820 51 SPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVK 93 (225)
Q Consensus 51 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~ 93 (225)
.+.+.|..+++.+.+.| +..|..++.++.+.|+.+.|..
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHH
Confidence 46788888888888764 4678888888877777665543
No 355
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.89 E-value=1.1e+02 Score=21.24 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=44.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHH
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKA 195 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 195 (225)
|....++-++..++.-.-++++...+++..+.|. .+..+|---++.+++-..+..|
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-------------------I~ld~ylK~vR~LaReQF~~ra 164 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-------------------IPLDTFVKQGRELARQQFLVRW 164 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------------------SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 4456689999999999999999999999999987 5667777777777665544443
No 356
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=26.57 E-value=1.9e+02 Score=21.03 Aligned_cols=88 Identities=11% Similarity=0.203 Sum_probs=49.8
Q ss_pred HHHhCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 045820 47 KIKASPLKERIDIFNSIKKD--GTNWSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVY 124 (225)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 124 (225)
++...++++|..+++..++. ++++.... .-..+...++.-.....-.-+..+.+++.. .++..
T Consensus 28 ~IA~r~feeAv~lle~~~~~l~~~~~~~~~------------~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~ 92 (235)
T 2d2s_A 28 ELARLRFESAVETLLDIESQLEDLSERISD------------EELMLLNLISLKIEQRREAISSKLSQSILS---SNEIV 92 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhCcccccc------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHH
Confidence 56899999999999887643 22221000 001111112111222223344445555533 45566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 125 TYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 125 ~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
.-...+..+.+.|+.++|.++|-+.
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChhHHHHHHHHH
Confidence 6677788999999999999988554
No 357
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=26.38 E-value=4e+02 Score=24.87 Aligned_cols=81 Identities=12% Similarity=-0.010 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHc---CCC-ccHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 045820 126 YTAIMDGFCKVG-RSNEAMELLNEAIER---GVT-QNVVTLIQLL-QRLEMGHIPRTITFNNVIQALCGVGKIHKALLLL 199 (225)
Q Consensus 126 ~~~ll~~~~~~g-~~~~a~~~~~~m~~~---g~~-p~~~t~~~l~-~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 199 (225)
..-++.++.+.| .-+.|.++|+.|.+. |+. ..+..|..+- +..=.+..--.+-|.++++.. .|+.++...+.
T Consensus 781 r~~F~~g~~~~G~~~~~a~~ifd~i~~Fa~YgFnKSHAaAYa~laYqtAyLK~hyP~eF~aAlLt~~--~~~~~k~~~~i 858 (1220)
T 2hpi_A 781 RERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVE--RHDSDKVAEYI 858 (1220)
T ss_dssp HHHHHHHHHHHSCCSHHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHhHhh--cCCchHHHHHH
Confidence 456688888888 457789999999764 332 2233444332 110001112345567777666 78899999999
Q ss_pred HHHHhcCCC
Q 045820 200 FLMYEHGKI 208 (225)
Q Consensus 200 ~~m~~~g~~ 208 (225)
+++.+.|++
T Consensus 859 ~ear~~Gi~ 867 (1220)
T 2hpi_A 859 RDARALGIP 867 (1220)
T ss_dssp HHHHTTTCC
T ss_pred HHHHHCCCe
Confidence 999999874
No 358
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=26.31 E-value=1.2e+02 Score=19.57 Aligned_cols=19 Identities=5% Similarity=0.188 Sum_probs=9.5
Q ss_pred HHHHHHHHhCCHHHHHHHH
Q 045820 42 QRFVDKIKASPLKERIDIF 60 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~ 60 (225)
.++..+++.|+.+....++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll 25 (162)
T 1ihb_A 7 NELASAAARGDLEQLTSLL 25 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHH
Confidence 3455555556555444443
No 359
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.11 E-value=2.3e+02 Score=21.88 Aligned_cols=53 Identities=15% Similarity=0.052 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 102 GRVEEAYEMLMNVKNDGLKPDV--YTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 102 g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
.+..+..++-..+....+.|.. .+...-|..+.|.+++..|-.+-+++.+.+-
T Consensus 184 ~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 184 GNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp TCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 4556667777777776777743 4577788889999999999999999988764
No 360
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=26.09 E-value=1e+02 Score=18.25 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCH
Q 045820 52 PLKERIDIFNSIKKD-GTNWSVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 52 ~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~~~~ 88 (225)
..+++...|..|... ++. ...+|...|...+.-..+
T Consensus 15 t~eea~~~Fk~LL~e~~V~-p~~tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVS-AFSTWEKELHKIVFDPRY 51 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCC-SSSCHHHHHHHHHTCSGG
T ss_pred CHHHHHHHHHHHHHHcCcC-CCCCHHHHHHHHccCCcc
Confidence 357899999988755 555 556899999888776554
No 361
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=26.08 E-value=1.6e+02 Score=20.17 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=10.8
Q ss_pred HHHHHccCcHHHHHHHHHHHHhcC
Q 045820 183 IQALCGVGKIHKALLLLFLMYEHG 206 (225)
Q Consensus 183 i~~~~~~g~~~~a~~~~~~m~~~g 206 (225)
+...+..|+.+ +++.+.+.|
T Consensus 144 L~~A~~~~~~~----~v~~Ll~~g 163 (228)
T 2dzn_A 144 LHRAASVGSLK----LIELLCGLG 163 (228)
T ss_dssp HHHHHHTTCHH----HHHHHHTTT
T ss_pred HHHHHHcCCHH----HHHHHHhcC
Confidence 34445566654 455555555
No 362
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.50 E-value=1e+02 Score=20.26 Aligned_cols=57 Identities=16% Similarity=0.090 Sum_probs=26.0
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHhhcC
Q 045820 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV-VTLIQLLQRLEMG 171 (225)
Q Consensus 114 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~ 171 (225)
+++.|++++..=. .++..+...+..-.|.++++.+++.+...+. .+|..|=.+.+.|
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4455555444322 2344444444445566666666555433332 2344444343333
No 363
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=25.47 E-value=1.5e+02 Score=19.74 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=29.8
Q ss_pred cchhhhHHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 36 PRSLQAQRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 36 ~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 96 (225)
....+..++..++..|+.+....+++.-..-. ..+..-++ .+...+..|+.+.+..+++
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t-~L~~A~~~~~~~~v~~Ll~ 89 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGST-ALIWAVKNNRLGIAEKLLS 89 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCC-HHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCcc-HHHHHHHcCCHHHHHHHHH
Confidence 34455667777778887776666655421111 11222233 3344445566655555444
No 364
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.47 E-value=2.2e+02 Score=21.42 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 045820 42 QRFVDKIKASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVM 84 (225)
Q Consensus 42 ~~l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 84 (225)
..++..+..++.+.+..++.++...|..|.. .+..++.....
T Consensus 269 ~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~-i~~~l~~~~~~ 310 (353)
T 1sxj_D 269 IEIVEKVKSGDFDEIKKYVNTFMKSGWSAAS-VVNQLHEYYIT 310 (353)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHTSCCCTT-HHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHH
Confidence 3455566778888899988888888877654 34455555444
No 365
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=25.46 E-value=1.5e+02 Score=19.74 Aligned_cols=95 Identities=6% Similarity=0.077 Sum_probs=57.0
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH---HhcC--CHHHHHHHHHHHhhCC--CC-
Q 045820 49 KASPLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQDTAVKFFSNH---LMVG--RVEEAYEMLMNVKNDG--LK- 120 (225)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~g--~~~~a~~~~~~m~~~g--~~- 120 (225)
..|-+++.+.-+.+|... -+......++..|... +.+.+..+ ...+ +++.+...-..++... +-
T Consensus 19 ~~g~LD~~f~qL~~L~~~---~~~~~~~ell~~Fl~d-----~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGa 90 (153)
T 3us6_A 19 MEGFLDGQFLQLQQLQDE---NNPEFVFEVVSLFFDD-----SERILKDLSFAVDQQSIDFKKVDAHVHQFKGSSASIGA 90 (153)
T ss_dssp HTTSCCHHHHHHHHTCBT---TBTTHHHHHHHHHHHH-----HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cccchHHHHHHHHHhhcC---CCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhcH
Confidence 667677544444444332 2556677888888543 33333333 4455 7888877777777421 11
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045820 121 PDVYTYTAIMDGFCKVGRSNEAMELLNEAIE 151 (225)
Q Consensus 121 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 151 (225)
........-+..+++.|+.+.+..++.++..
T Consensus 91 ~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 91 QRVKNSCVAFRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2444456677777888888877777777664
No 366
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.95 E-value=1.5e+02 Score=19.53 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=38.6
Q ss_pred HHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHhhcCC
Q 045820 112 MNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGVTQNV-VTLIQLLQRLEMGH 172 (225)
Q Consensus 112 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l~~~~~~~~ 172 (225)
+.+++.|++++..= -.++..+...+..-.|.++++.+++.+...+. .+|..|=.+.+.|+
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 44677887665543 34566777777778899999999887655444 45666665555553
No 367
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.80 E-value=97 Score=20.07 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=30.8
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHH-HHHHHHHHhhcC
Q 045820 114 VKNDGLKPDVYTYTAIMDGFCKVG-RSNEAMELLNEAIERGVTQNVV-TLIQLLQRLEMG 171 (225)
Q Consensus 114 m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~-t~~~l~~~~~~~ 171 (225)
+++.|++++..=. .++..+...+ ..-.|.++++.+++.+...+.. +|..|=.+.+.|
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 5566666554333 3455555554 5566777777777665444433 455554444444
No 368
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=24.42 E-value=2.6e+02 Score=21.99 Aligned_cols=70 Identities=13% Similarity=-0.002 Sum_probs=47.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 70 WSVSDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEA 149 (225)
Q Consensus 70 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 149 (225)
++..+|..+|.-..+..++ ..+++..+++.+.+. -.++...-..++-.+.|.-..++...+.+.|
T Consensus 21 ~~~~t~~~il~~l~~g~~L--------------s~eEa~~~~~~i~~G-~~~~~QiaAfL~Alr~kGet~eEi~g~~~am 85 (377)
T 3r88_A 21 ASVPSWPQILGRLTDNRDL--------------ARGQAAWAMDQIMTG-NARPAQIAAFAVAMTMKAPTADEVGELAGVM 85 (377)
T ss_dssp ---CCHHHHHHHHHTTCCC--------------CTTHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCC--------------CHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 3556899999998776554 346777777777764 3456655555565566766788888888889
Q ss_pred HHcCC
Q 045820 150 IERGV 154 (225)
Q Consensus 150 ~~~g~ 154 (225)
++.+.
T Consensus 86 ~~~~~ 90 (377)
T 3r88_A 86 LSHAH 90 (377)
T ss_dssp HHHSC
T ss_pred HHhCC
Confidence 87754
No 369
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.37 E-value=1.3e+02 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 045820 76 NDLLMALVMLNEQDTAVKFFSNH 98 (225)
Q Consensus 76 ~~li~~~~~~~~~~~a~~~~~~~ 98 (225)
..++.-|...|+.++|...++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 44555665566666666555555
No 370
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.90 E-value=1.8e+02 Score=19.84 Aligned_cols=64 Identities=8% Similarity=-0.035 Sum_probs=41.2
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045820 41 AQRFVDKIKASPLKERIDIFNSIKKDGTNW--SVSDFNDLLM-ALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVK 115 (225)
Q Consensus 41 ~~~l~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~ 115 (225)
+...+..+..|++-+|.++++..-+..-.+ ....|..||. ..+- ++. .+.|+...|..++.+-.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvA---------l~H--~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGA---------YKH--FDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHH---------HHH--HHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---------HHH--HHhCCHHHHHHHHHHHH
Confidence 444555667899999999999987765555 5556777777 2211 111 35566666666666554
No 371
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=23.82 E-value=1.2e+02 Score=18.09 Aligned_cols=29 Identities=10% Similarity=0.058 Sum_probs=17.9
Q ss_pred hcCcchhhhHHHHHHHHhCCHHHHHHHHH
Q 045820 33 KENPRSLQAQRFVDKIKASPLKERIDIFN 61 (225)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~ 61 (225)
..++...+..++..++..|+.+.+..+++
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 45 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMA 45 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHH
Confidence 34456667778888899998876655543
No 372
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=23.18 E-value=1.1e+02 Score=17.56 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 045820 52 PLKERIDIFNSIKKDGTNWSVSDFNDLLMALVMLNEQ 88 (225)
Q Consensus 52 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~ 88 (225)
..++|...|.+|.+..-.....+|...+..+..-.++
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY 49 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRY 49 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccc
Confidence 3578999998886553344567899999988776544
No 373
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.80 E-value=98 Score=18.29 Aligned_cols=30 Identities=0% Similarity=-0.127 Sum_probs=19.7
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045820 67 GTNWSVSDFNDLLMALVMLNEQDTAVKFFS 96 (225)
Q Consensus 67 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 96 (225)
+++|++.||+-+...+-+..-...+..+.+
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik 60 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAK 60 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHH
Confidence 679999999988777655443344444433
No 374
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=22.38 E-value=82 Score=19.30 Aligned_cols=15 Identities=7% Similarity=0.034 Sum_probs=8.0
Q ss_pred hhHHHHHHHHhCCHH
Q 045820 40 QAQRFVDKIKASPLK 54 (225)
Q Consensus 40 ~~~~l~~~~~~~~~~ 54 (225)
+..++..++..|+.+
T Consensus 40 g~t~L~~A~~~~~~~ 54 (123)
T 3aaa_C 40 GRKPLHYAADCGQLE 54 (123)
T ss_dssp SSCHHHHHHHTTCHH
T ss_pred CCcHHHHHHHcCCHH
Confidence 344555555666543
No 375
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=22.32 E-value=1.6e+02 Score=21.51 Aligned_cols=85 Identities=15% Similarity=0.209 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHhhCCC-------CCCHHhHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 045820 103 RVEEAYEMLMNVKNDGL-------KPDVYTYTAIMDGFCKVG---------RSNEAMELLNEAIERGVTQNVVTLIQLLQ 166 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~-------~p~~~~~~~ll~~~~~~g---------~~~~a~~~~~~m~~~g~~p~~~t~~~l~~ 166 (225)
..+.|..++.+|--..+ .-...-|-++..+|++.| +.+.-..+++...+.|++
T Consensus 146 ~vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~----------- 214 (249)
T 3m0z_A 146 PLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVS----------- 214 (249)
T ss_dssp EHHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCS-----------
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCC-----------
Confidence 46888888888864311 134556899999999998 457778888888888875
Q ss_pred HhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 167 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
. .=...|+++|+--...-++++..+++..+.+
T Consensus 215 ----~--viPHIYssIIDk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 215 ----K--IIPHIYSSIIDKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp ----C--BCCBCCGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred ----e--ecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence 1 2235688888777777788888888888764
No 376
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=22.13 E-value=2.2e+02 Score=20.27 Aligned_cols=14 Identities=0% Similarity=0.029 Sum_probs=6.9
Q ss_pred hHHHHHHHHhCCHH
Q 045820 41 AQRFVDKIKASPLK 54 (225)
Q Consensus 41 ~~~l~~~~~~~~~~ 54 (225)
..++..++..|+.+
T Consensus 70 ~t~L~~A~~~~~~~ 83 (261)
T 2xai_A 70 HTPLFNACVSGSWD 83 (261)
T ss_dssp CCHHHHHHHHTCHH
T ss_pred CCHHHHHHHcCCHH
Confidence 34455555555443
No 377
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=21.77 E-value=2e+02 Score=19.72 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=61.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-CCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045820 43 RFVDKIKASPLKERIDIFNSIKKD-GTNWSV-------SDFNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNV 114 (225)
Q Consensus 43 ~l~~~~~~~~~~~a~~~~~~m~~~-g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m 114 (225)
.+-..+..+.++.|.-+.+.+... +..|+. .+...+-+++...+++..|...|++. +++-+.+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA---------Lq~~k~l 96 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA---------LQQKKAL 96 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------HHHHHCC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH---------HHHHHHH
Confidence 344456889999999887765433 123332 24566777888888888888888764 1111111
Q ss_pred hhC-----------------CCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 045820 115 KND-----------------GLKPDVYT-YTAIMDGFCKVGRSNEAMELLNEAIER 152 (225)
Q Consensus 115 ~~~-----------------g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~ 152 (225)
.+. ....+... |- +-.+|.+.+++++|..+++.....
T Consensus 97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkyk-ia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYK-LAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp --------------------CCCCHHHHHHH-HHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hcCCCccccccccCCCcccccccchHHHHHH-HHHHHHHHCCHHHHHHHHhcCCch
Confidence 100 11122223 44 678999999999999998865433
No 378
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=21.54 E-value=48 Score=17.64 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcc
Q 045820 137 GRSNEAMELLNEAIERGVTQN 157 (225)
Q Consensus 137 g~~~~a~~~~~~m~~~g~~p~ 157 (225)
+|+..|.++++.+++.|-.|+
T Consensus 7 RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 467788888998888887643
No 379
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.49 E-value=5.2e+02 Score=24.46 Aligned_cols=107 Identities=12% Similarity=0.043 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 045820 75 FNDLLMALVMLNEQDTAVKFFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIERGV 154 (225)
Q Consensus 75 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 154 (225)
-+.||+|+++.|.-=.=..+++. ......+.-.+.|.++.+---.-|....-..+.-..+++++-.|++++.++.+..
T Consensus 1237 k~~l~~al~~k~~ala~~~~~~~-~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k- 1314 (1354)
T 3lxu_X 1237 KNTLIEALSKKGIAVAKLAVLDD-CIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK- 1314 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-CSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 56788888876642211122221 1223455556666666643212233333333344447889999999999988753
Q ss_pred CccHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 045820 155 TQNVVTLIQLLQRLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMY 203 (225)
Q Consensus 155 ~p~~~t~~~l~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 203 (225)
|+...|..++..+...|- +-...+.+.+.
T Consensus 1315 -------------------~~~~~~~~~~~~~~~l~w-~h~~~~~~~~~ 1343 (1354)
T 3lxu_X 1315 -------------------RTRDHFVELAAINGALGH-EHIRTVINRMM 1343 (1354)
T ss_dssp -------------------CCHHHHHHHHHHHHHHSC-HHHHHHHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHHcCC-HHHHHHHHhhh
Confidence 566777777666655553 33334444443
No 380
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=21.44 E-value=1.7e+02 Score=21.71 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHhhCCC-------CCCHHhHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 045820 103 RVEEAYEMLMNVKNDGL-------KPDVYTYTAIMDGFCKVG---------RSNEAMELLNEAIERGVTQNVVTLIQLLQ 166 (225)
Q Consensus 103 ~~~~a~~~~~~m~~~g~-------~p~~~~~~~ll~~~~~~g---------~~~~a~~~~~~m~~~g~~p~~~t~~~l~~ 166 (225)
..+.|..++.+|--..+ .-...-|-++..+|++.| +.+.-..+++...+.|++
T Consensus 169 ~vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~----------- 237 (275)
T 3m6y_A 169 PIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVE----------- 237 (275)
T ss_dssp EHHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCS-----------
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCC-----------
Confidence 46889999888864321 134566899999999998 567778888888888875
Q ss_pred HhhcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHh
Q 045820 167 RLEMGHIPRTITFNNVIQALCGVGKIHKALLLLFLMYE 204 (225)
Q Consensus 167 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 204 (225)
+.=...|+++|+--...-++++..+++..+++
T Consensus 238 ------~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 238 ------QVIPHVYSSIIDKETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp ------CBCCEECGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred ------eecccccceeccCCCCCCCHHHHHHHHHHHHH
Confidence 12335788888777777788888888887764
No 381
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=21.40 E-value=1.7e+02 Score=18.87 Aligned_cols=29 Identities=3% Similarity=-0.038 Sum_probs=23.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 122 DVYTYTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 122 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
|+..+...+.-+.+.++++++..++.-|.
T Consensus 59 DV~~l~~yL~~lVeek~Lek~~~vlk~l~ 87 (124)
T 3vu7_H 59 DILQVVKYCTDLIEEKDLEKLDLVIKYMK 87 (124)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 67778888888888999999988866654
No 382
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=21.29 E-value=1.1e+02 Score=16.73 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 045820 53 LKERIDIFNSIKK 65 (225)
Q Consensus 53 ~~~a~~~~~~m~~ 65 (225)
.++|..+-+.+..
T Consensus 22 H~EA~tIA~~L~~ 34 (61)
T 3ph0_C 22 HQEAASIADWLAQ 34 (61)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 383
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=21.17 E-value=3e+02 Score=21.49 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCccHHHHHHH
Q 045820 94 FFSNHLMVGRVEEAYEMLMNVKNDGLKPDVYTYTAIMDGFCKVGR--SNEAMELLNEAIERGVTQNVVTLIQL 164 (225)
Q Consensus 94 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~l 164 (225)
++++....|+.++|.++++++..-.+. ...+..++..+.-+.++ .+.+..++..+.+.|+-+.......+
T Consensus 223 lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 223 LLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 445557889999999999999742221 34456777777766543 45688888888888876544444333
No 384
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.13 E-value=2e+02 Score=19.48 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 045820 126 YTAIMDGFCKVGRSNEAMELLNEAI 150 (225)
Q Consensus 126 ~~~ll~~~~~~g~~~~a~~~~~~m~ 150 (225)
...+|.-|...|+.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4667888888888888888888765
No 385
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.05 E-value=1.4e+02 Score=17.73 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 045820 174 PRTITFNNVIQALCGVGKIHKALLLLFLMYEHGKIPSRTSHDMLIKKLDQ 223 (225)
Q Consensus 174 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 223 (225)
.+..-+..+-.. ....++|..+++.+..+| ...|..+++++.+
T Consensus 37 lt~~~~e~I~~~---~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~ 79 (94)
T 2p1h_A 37 LTISEEEKVRNE---PTQQQRAAMLIKMILKKD----NDSYVSFYNALLH 79 (94)
T ss_dssp SCHHHHHHHHTS---SSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcC---CChHHHHHHHHHHHHHcC----HHHHHHHHHHHHH
Confidence 444444444442 466677777777776543 4566666666544
No 386
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.90 E-value=2e+02 Score=19.33 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=40.8
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccH-HHHHHHHHHhhcCC
Q 045820 114 VKNDGLKPDVYTYTAIMDGFCKVGRSNEAMELLNEAIER--GVTQNV-VTLIQLLQRLEMGH 172 (225)
Q Consensus 114 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~~-~t~~~l~~~~~~~~ 172 (225)
+++.|++++..= -.++..+...+..-.|.++++.+++. +...+. .+|++|=.+.+.|+
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 466788776543 45677788887888899999999987 655543 46777766665553
Done!