BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045821
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 131 SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGD---THSWDVYDP 187
S S V CY+A+ N WT A MST R GVLN +Y +GG S +VYDP
Sbjct: 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDP 227
Query: 188 RTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMA 247
TN W+ + N+ ++G +Y+ + + Y P+TD W + M+
Sbjct: 228 TTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMS 287
Query: 248 SG 249
+G
Sbjct: 288 TG 289
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 97 WKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMST 156
W + ELP+R R G + + +GG S + V YD + WT A M
Sbjct: 42 WHQVAELPSRRCR---AGMVYMAGLVFAVGGFNGSLRVRT-VDSYDPVKDQWTSVANMRD 97
Query: 157 ARCYFPCGVLNQKIYCIGGL-GDT--HSWDVYDPRTNNWKLHTEP 198
R VLN +Y +GG G T S + Y+ ++N W H P
Sbjct: 98 RRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEW-FHVAP 141
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 3/116 (2%)
Query: 129 GWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVY 185
G + A V CYD W A + + RC + ++ +GG + + D Y
Sbjct: 23 GQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSY 82
Query: 186 DPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSWLH 241
DP + W + V++G +Y +T Y ++ W H
Sbjct: 83 DPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 35 RRYHAVLKCVSSRWRGL--LHSEEWCAYRRKHNLDETWIYA---FCRDNKLERVCCYVLD 89
+ Y L VSS W GL L S C + D+ ++ A + L+ V CY D
Sbjct: 77 QSYFFQLDNVSSEWVGLPPLPSAR-CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCY--D 133
Query: 90 PNSTRRSWKMIHELPARTLRRKGMGFEVLGKNA--YLLGGCGWSEDATSEVYCYDASMNT 147
P + + W + LP + G V+ N Y LGG + T+ V+ Y+
Sbjct: 134 PVAAK--WSEVKNLPIKV-----YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186
Query: 148 WTDAAPMSTARCYFPCGVLNQKIYCIGGL---GDTHSWDVYDPRTNNWKLHTE 197
W D APM T R F + KI GG+ G + S + +D +TN W++ TE
Sbjct: 187 WKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE 239
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 14/167 (8%)
Query: 76 RDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDAT 135
R +ER DPN + W M+ ++ R+G G V Y LGG +
Sbjct: 126 RHTSMER-----YDPNIDQ--WSMLGDMQTA---REGAGLVVASGVIYCLGGYD-GLNIL 174
Query: 136 SEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGL-GDTH--SWDVYDPRTNNW 192
+ V YD WT+ PM+T R +LN IY +GG G H S + Y+ RT++W
Sbjct: 175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234
Query: 193 KLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCALVYEPSTDSW 239
T + V+ G++Y + Y+P DSW
Sbjct: 235 TTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 109 RRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQ 168
+R G G +L + Y++GG + +S V Y+ ++WT M+T RCY VL
Sbjct: 196 KRSGAGVALLNDHIYVVGGFDGTAHLSS-VEAYNIRTDSWTTVTSMTTPRCYVGATVLRG 254
Query: 169 KIYCIGGL-GDT--HSWDVYDPRTNNWKLHT 196
++Y I G G++ S + YDP ++W++ T
Sbjct: 255 RLYAIAGYDGNSLLSSIECYDPIIDSWEVVT 285
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 108 LRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLN 167
+RR G LG Y+ GG S TS + YD +++ W+ M TAR V +
Sbjct: 101 VRRGLAGATTLGDMIYVSGGFDGSRRHTS-MERYDPNIDQWSMLGDMQTAREGAGLVVAS 159
Query: 168 QKIYCIG---GLGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAAT 224
IYC+G GL +S + YDP T +W T +++ IY+ T
Sbjct: 160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYV-VGGFDGT 218
Query: 225 SHVCAL-VYEPSTDSW 239
+H+ ++ Y TDSW
Sbjct: 219 AHLSSVEAYNIRTDSW 234
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 45/130 (34%), Gaps = 8/130 (6%)
Query: 118 LGKNAYLL--GGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG 175
LG N LL GG G + V YD W+ ++ R Y L+ +IY IGG
Sbjct: 11 LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGG 70
Query: 176 ------LGDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCA 229
L D W N+ + + + IY+ + H
Sbjct: 71 YDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSM 130
Query: 230 LVYEPSTDSW 239
Y+P+ D W
Sbjct: 131 ERYDPNIDQW 140
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 71 IYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW 130
+ F N+L CY + R W+MI P T+R G G VL Y GG
Sbjct: 167 VGGFDGTNRLNSAECYYPE----RNEWRMI--TPMNTIR-SGAGVCVLHNCIYAAGGYD- 218
Query: 131 SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW----DVYD 186
+D + V YD TWT APM R V KIY +GG D H++ + YD
Sbjct: 219 GQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGY-DGHTFLDSVECYD 277
Query: 187 PRTNNWK 193
P ++ W
Sbjct: 278 PDSDTWS 284
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 60/162 (37%), Gaps = 8/162 (4%)
Query: 94 RRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP 153
R W ++ + RR G+G VL + Y +GG + S CY N W P
Sbjct: 139 RDEWHLVAPM---LTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEWRMITP 194
Query: 154 MSTARCYFPCGVLNQKIYCIGGL---GDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM 210
M+T R VL+ IY GG +S + YD T W V
Sbjct: 195 MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVH 254
Query: 211 DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG 252
GKIY+ T Y+P +D+W M SG G
Sbjct: 255 QGKIYVLGGYDGHTFLDSVECYDPDSDTWSEV-TRMTSGRSG 295
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 86 YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDA---TSEVYCYD 142
Y+ N + SW + +L + R G+ V+G Y +GG S D +S + CY+
Sbjct: 33 YLEAYNPSNGSWLRLADL---QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 89
Query: 143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG-LGDTH--SWDVYDPRTNNWKL 194
N W+ A MS R GV++ IY +GG G H S + Y+P + W L
Sbjct: 90 PMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHL 144
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 9/129 (6%)
Query: 118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG 177
+G+ Y GG + + S + Y+ S +W A + R V+ +Y +GG
Sbjct: 16 VGRLIYTAGG--YFRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 73
Query: 178 -------DTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCAL 230
D+ + D Y+P TN W ++ V+DG IY + H
Sbjct: 74 NSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVE 133
Query: 231 VYEPSTDSW 239
YEP D W
Sbjct: 134 RYEPERDEW 142
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 107 TLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL 166
++ R +G V+ + Y +GG +S V Y+ + W APM T R VL
Sbjct: 102 SVPRNRIGVGVIDGHIYAVGGSHGCIHHSS-VERYEPERDEWHLVAPMLTRRIGVGVAVL 160
Query: 167 NQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAA 223
N+ +Y +GG T +S + Y P N W++ T N V+ IY
Sbjct: 161 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQ 220
Query: 224 TSHVCALVYEPSTDSW 239
Y+ T++W
Sbjct: 221 DQLNSVERYDVETETW 236
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 71 IYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW 130
+ F N+L CY + R W+MI P T+R G G VL Y GG
Sbjct: 168 VGGFDGTNRLNSAECYYPE----RNEWRMI--TPMNTIR-SGAGVCVLHNCIYAAGGYD- 219
Query: 131 SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW----DVYD 186
+D + V YD TWT APM R V KIY +GG D H++ + YD
Sbjct: 220 GQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGY-DGHTFLDSVECYD 278
Query: 187 PRTNNWK 193
P ++ W
Sbjct: 279 PDSDTWS 285
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 60/162 (37%), Gaps = 8/162 (4%)
Query: 94 RRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP 153
R W ++ + RR G+G VL + Y +GG + S CY N W P
Sbjct: 140 RDEWHLVAPM---LTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEWRMITP 195
Query: 154 MSTARCYFPCGVLNQKIYCIGGL---GDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM 210
M+T R VL+ IY GG +S + YD T W V
Sbjct: 196 MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVH 255
Query: 211 DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG 252
GKIY+ T Y+P +D+W M SG G
Sbjct: 256 QGKIYVLGGYDGHTFLDSVECYDPDSDTWSEV-TRMTSGRSG 296
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 86 YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDA---TSEVYCYD 142
Y+ N + SW + +L + R G+ V+G Y +GG S D +S + CY+
Sbjct: 34 YLEAYNPSNGSWLRLADL---QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 90
Query: 143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG-LGDTH--SWDVYDPRTNNWKL 194
N W+ A MS R GV++ IY +GG G H S + Y+P + W L
Sbjct: 91 PMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHL 145
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 9/129 (6%)
Query: 118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG 177
+G+ Y GG + + S + Y+ S +W A + R V+ +Y +GG
Sbjct: 17 VGRLIYTAGG--YFRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 74
Query: 178 -------DTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCAL 230
D+ + D Y+P TN W ++ V+DG IY + H
Sbjct: 75 NSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVE 134
Query: 231 VYEPSTDSW 239
YEP D W
Sbjct: 135 RYEPERDEW 143
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 107 TLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL 166
++ R +G V+ + Y +GG +S V Y+ + W APM T R VL
Sbjct: 103 SVPRNRIGVGVIDGHIYAVGGSHGCIHHSS-VERYEPERDEWHLVAPMLTRRIGVGVAVL 161
Query: 167 NQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAA 223
N+ +Y +GG T +S + Y P N W++ T N V+ IY
Sbjct: 162 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQ 221
Query: 224 TSHVCALVYEPSTDSW 239
Y+ T++W
Sbjct: 222 DQLNSVERYDVETETW 237
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 71 IYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW 130
+ F N+L CY + R W+MI A R G G VL Y GG
Sbjct: 175 VGGFDGTNRLNSAECYYPE----RNEWRMI---TAMNTIRSGAGVCVLHNCIYAAGGYD- 226
Query: 131 SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW----DVYD 186
+D + V YD TWT APM R V +IY +GG D H++ + YD
Sbjct: 227 GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGY-DGHTFLDSVECYD 285
Query: 187 PRTNNWK 193
P T+ W
Sbjct: 286 PDTDTWS 292
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 86 YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDA---TSEVYCYD 142
Y+ N + +W + +L + R G+ V+G Y +GG S D +S + CY+
Sbjct: 41 YLEAYNPSDGTWLRLADL---QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 97
Query: 143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG-LGDTH--SWDVYDPRTNNWKLHTEPN 199
N W+ APMS R GV++ IY +GG G H S + Y+P + W L P
Sbjct: 98 PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL-VAPM 156
Query: 200 IFTEIEDSFVMDGKIYIRCSASAATSHV-CALVYEPSTDSW 239
+ I + ++ T+ + A Y P + W
Sbjct: 157 LTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 197
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 59/162 (36%), Gaps = 8/162 (4%)
Query: 94 RRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP 153
R W ++ + RR G+G VL + Y +GG + S CY N W
Sbjct: 147 RDEWHLVAPM---LTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEWRMITA 202
Query: 154 MSTARCYFPCGVLNQKIYCIGGL---GDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM 210
M+T R VL+ IY GG +S + YD T W V
Sbjct: 203 MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH 262
Query: 211 DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG 252
G+IY+ T Y+P TD+W M SG G
Sbjct: 263 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV-TRMTSGRSG 303
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 9/129 (6%)
Query: 118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG 177
+G+ Y GG + + S + Y+ S TW A + R V+ +Y +GG
Sbjct: 24 VGRLIYTAGG--YFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 81
Query: 178 -------DTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCAL 230
D+ + D Y+P TN W ++ V+DG IY + H
Sbjct: 82 NSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVE 141
Query: 231 VYEPSTDSW 239
YEP D W
Sbjct: 142 RYEPERDEW 150
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 4/136 (2%)
Query: 107 TLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL 166
++ R +G V+ + Y +GG S V Y+ + W APM T R VL
Sbjct: 110 SVPRNRIGVGVIDGHIYAVGGSHGCIHHNS-VERYEPERDEWHLVAPMLTRRIGVGVAVL 168
Query: 167 NQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAA 223
N+ +Y +GG T +S + Y P N W++ T N V+ IY
Sbjct: 169 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ 228
Query: 224 TSHVCALVYEPSTDSW 239
Y+ T++W
Sbjct: 229 DQLNSVERYDVETETW 244
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 71 IYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW 130
+ F N+L CY + R W+MI A R G G VL Y GG
Sbjct: 174 VGGFDGTNRLNSAECYYPE----RNEWRMI---TAMNTIRSGAGVCVLHNCIYAAGGYD- 225
Query: 131 SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW----DVYD 186
+D + V YD TWT APM R V +IY +GG D H++ + YD
Sbjct: 226 GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGY-DGHTFLDSVECYD 284
Query: 187 PRTNNWK 193
P T+ W
Sbjct: 285 PDTDTWS 291
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 86 YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDA---TSEVYCYD 142
Y+ N + +W + +L + R G+ V+G Y +GG S D +S + CY+
Sbjct: 40 YLEAYNPSDGTWLRLADL---QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 96
Query: 143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG-LGDTH--SWDVYDPRTNNWKLHTEPN 199
N W+ APMS R GV++ IY +GG G H S + Y+P + W L P
Sbjct: 97 PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL-VAPM 155
Query: 200 IFTEIEDSFVMDGKIYIRCSASAATSHV-CALVYEPSTDSW 239
+ I + ++ T+ + A Y P + W
Sbjct: 156 LTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 196
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 59/162 (36%), Gaps = 8/162 (4%)
Query: 94 RRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP 153
R W ++ + RR G+G VL + Y +GG + S CY N W
Sbjct: 146 RDEWHLVAPM---LTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEWRMITA 201
Query: 154 MSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM 210
M+T R VL+ IY GG +S + YD T W V
Sbjct: 202 MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH 261
Query: 211 DGKIYIRCSASAATSHVCALVYEPSTDSWLHADANMASGWRG 252
G+IY+ T Y+P TD+W M SG G
Sbjct: 262 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV-TRMTSGRSG 302
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 9/129 (6%)
Query: 118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG 177
+G+ Y GG + + S + Y+ S TW A + R V+ +Y +GG
Sbjct: 23 VGRLIYTAGG--YFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 80
Query: 178 -------DTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCAL 230
D+ + D Y+P TN W ++ V+DG IY + H
Sbjct: 81 NSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVE 140
Query: 231 VYEPSTDSW 239
YEP D W
Sbjct: 141 RYEPERDEW 149
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 4/136 (2%)
Query: 107 TLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL 166
++ R +G V+ + Y +GG S V Y+ + W APM T R VL
Sbjct: 109 SVPRNRIGVGVIDGHIYAVGGSHGCIHHNS-VERYEPERDEWHLVAPMLTRRIGVGVAVL 167
Query: 167 NQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAA 223
N+ +Y +GG T +S + Y P N W++ T N V+ IY
Sbjct: 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ 227
Query: 224 TSHVCALVYEPSTDSW 239
Y+ T++W
Sbjct: 228 DQLNSVERYDVETETW 243
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 13/127 (10%)
Query: 71 IYAFCRDNKLERVCCYVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGW 130
+ F N+L CY + R W+ I A R G G VL Y GG
Sbjct: 174 VGGFDGTNRLNSAECYYPE----RNEWRXI---TAXNTIRSGAGVCVLHNCIYAAGGYD- 225
Query: 131 SEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGDTHSW----DVYD 186
+D + V YD TWT AP R V +IY +GG D H++ + YD
Sbjct: 226 GQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGY-DGHTFLDSVECYD 284
Query: 187 PRTNNWK 193
P T+ W
Sbjct: 285 PDTDTWS 291
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 86 YVLDPNSTRRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDA---TSEVYCYD 142
Y+ N + +W + +L + R G+ V+G Y +GG S D +S + CY+
Sbjct: 40 YLEAYNPSNGTWLRLADL---QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 96
Query: 143 ASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG-LGDTH--SWDVYDPRTNNWKLHTEPN 199
N W+ AP S R GV++ IY +GG G H S + Y+P + W L P
Sbjct: 97 PXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL-VAPX 155
Query: 200 IFTEIEDSFVMDGKIYIRCSASAATSHV-CALVYEPSTDSW 239
+ I + ++ T+ + A Y P + W
Sbjct: 156 LTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 196
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 9/129 (6%)
Query: 118 LGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLG 177
+G+ Y GG + + S + Y+ S TW A + R V+ +Y +GG
Sbjct: 23 VGRLIYTAGG--YFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRN 80
Query: 178 -------DTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAATSHVCAL 230
D+ + D Y+P TN W ++ V+DG IY + H
Sbjct: 81 NSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVE 140
Query: 231 VYEPSTDSW 239
YEP D W
Sbjct: 141 RYEPERDEW 149
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 55/149 (36%), Gaps = 7/149 (4%)
Query: 94 RRSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAP 153
R W ++ P T RR G+G VL + Y +GG + S CY N W
Sbjct: 146 RDEWHLV--APXLT-RRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEWRXITA 201
Query: 154 MSTARCYFPCGVLNQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVM 210
+T R VL+ IY GG +S + YD T W V
Sbjct: 202 XNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVH 261
Query: 211 DGKIYIRCSASAATSHVCALVYEPSTDSW 239
G+IY+ T Y+P TD+W
Sbjct: 262 QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 4/136 (2%)
Query: 107 TLRRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVL 166
++ R +G V+ + Y +GG S V Y+ + W AP T R VL
Sbjct: 109 SVPRNRIGVGVIDGHIYAVGGSHGCIHHNS-VERYEPERDEWHLVAPXLTRRIGVGVAVL 167
Query: 167 NQKIYCIGGLGDT---HSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASAA 223
N+ +Y +GG T +S + Y P N W+ T N V+ IY
Sbjct: 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQ 227
Query: 224 TSHVCALVYEPSTDSW 239
Y+ T++W
Sbjct: 228 DQLNSVERYDVETETW 243
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 109 RRKGMGFEVLGKNAYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTAR 158
RR +G V Y+LGG V CYD +TW++ ++ R
Sbjct: 252 RRSALGITVHQGRIYVLGGYD-GHTFLDSVECYDPDTDTWSEVTRXTSGR 300
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 122 AYLLGGCGWSEDATSEVYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGGLGD--- 178
Y++GG G +++ YD W + APM TAR F V + +I G+ D
Sbjct: 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGL 210
Query: 179 THSWDVYDPRTNNW 192
T S +VY N W
Sbjct: 211 TSSAEVYSITDNKW 224
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 121 NAYLLGGCGWSEDATSE-----VYCYDASMNTWTDAAPMSTARCYFPCGVLNQKIYCIGG 175
++ GG ++ED + +D + W P+ + RC F G IY +GG
Sbjct: 47 QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGG 106
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 61/163 (37%), Gaps = 12/163 (7%)
Query: 86 YVLDPNSTR-RSWKMIHELPARTLRRKGMGFEVLGKNAYLLGGC---GWSEDATSEVYCY 141
Y+ + TR SW H P+ +R G Y+ GG S + Y
Sbjct: 118 YLFECYDTRTESW---HTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVY 174
Query: 142 DASMNTWTDAAPMSTARCYFPCGVLNQKIYCIG---GLGDTHSWDVYDPRTNNWKLHTEP 198
D + TWT+ PM AR + KI+ +G GLG + + YD + N WK+ P
Sbjct: 175 DPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM-VSP 233
Query: 199 NIFTEIEDSFVMDGKI-YIRCSASAATSHVCALVYEPSTDSWL 240
+ + G I Y+ L Y TD W+
Sbjct: 234 MPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWV 276
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 129 GWSEDATSEVY---CYDASMNTWTDAAPMSTARCYFPCGVLNQKIY-CIGGLGDT----- 179
G SE S +Y CYD +W M T RC N IY C G LG+
Sbjct: 108 GGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRV 167
Query: 180 -HSWDVYDPRTNNW 192
+S +VYDP T W
Sbjct: 168 LNSCEVYDPATETW 181
>pdb|1UG9|A Chain A, Crystal Structure Of Glucodextranase From Arthrobacter
Globiformis I42
pdb|1ULV|A Chain A, Crystal Structure Of Glucodextranase Complexed With
Acarbose
Length = 1020
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 177 GDTHSWDVYDPRTNNWKLHTEPNIFTEIEDSFVMDGKIYIRCSASA 222
GD S VY + W+ TE +FT + V DGK Y+R SA+
Sbjct: 458 GDAGSAAVYRATADEWQRSTEKWMFT--TNGPVGDGKYYLRISATG 501
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 141 YDASMNTWTDAAPMSTARCYFPCGVLNQ-KIYCIGGLGD----THSWDVYDPRTNNW 192
YD+S ++W M AR Y ++ +++ IGG G + +VY P + W
Sbjct: 253 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGSGGVFEKNGEVYSPSSKTW 309
>pdb|1QOK|A Chain A, Mfe-23 An Anti-Carcinoembryonic Antigen Single-Chain Fv
Antibody
Length = 282
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 213 KIYIRCSASAATSHVCALVYEPSTDS--WLHADANMASG 249
K+ I CSAS++ S++ +P T W+++ +N+ASG
Sbjct: 179 KVTITCSASSSVSYMHWFQQKPGTSPKLWIYSTSNLASG 217
>pdb|1V7M|L Chain L, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7M|M Chain M, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|L Chain L, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|M Chain M, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|N Chain N, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|O Chain O, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|2ZKH|L Chain L, Human Thrombopoietin Neutralizing Antibody Tn1 Fab
Length = 213
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 213 KIYIRCSASAATSHVCALVYEPSTDS--WLHADANMASG 249
K+ I CSAS++ S++ +P T W+++ +N+ASG
Sbjct: 18 KVTITCSASSSVSYMYWFQQKPGTSPKLWIYSTSNLASG 56
>pdb|2F4M|A Chain A, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
pdb|2F4O|A Chain A, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
Length = 295
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 224 TSHVCALVYEPSTDSWLHADA 244
T HV VY PS WLH DA
Sbjct: 168 TDHVWTEVYSPSQQRWLHCDA 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,290,058
Number of Sequences: 62578
Number of extensions: 415579
Number of successful extensions: 640
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 60
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)