BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045822
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 122/305 (40%), Gaps = 76/305 (24%)
Query: 5 LGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSI 64
L LSFN G+IP +G L+ L+ L N L G IP E+ I
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 65 PLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRN 124
P L N T+L +I +SNN L G IP +G L++L+ L+L NN+ SG+IP E+ +
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF------SGNIPAELGD 533
Query: 125 LKSXXXXXXXXXXXXGSIPLSLGXXXXXXXXYF--------------------------- 157
+S G+IP ++ F
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 158 -------------------STNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLI 198
++ G S N S+ L +S N L G IP +G++
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 199 KLVVLDLSINKLSGSIPLSFAXXXXXXXXXXXENSLCDSIQKEIGDMKSLSILDLSSNKL 258
L +L+L N +SGSIP E+GD++ L+ILDLSSNKL
Sbjct: 654 YLFILNLGHNDISGSIP------------------------DEVGDLRGLNILDLSSNKL 689
Query: 259 NGSIP 263
+G IP
Sbjct: 690 DGRIP 694
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 105/219 (47%), Gaps = 9/219 (4%)
Query: 2 LKFLGLSFNQFYGSIPPEIGHLTH-LKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXX 60
LK L LSFN+F G +P + +L+ L L S N SG I + +
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 61 KCS--IPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSI 118
+ IP +L N + L+ + +S N L G IP+ +GSL L DL+L+ +N L G I
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW------LNMLEGEI 455
Query: 119 PDEIRNLKSXXXXXXXXXXXXGSIPLSLGXXXXXXXXYFSTNALSGSISNEITNLRSISD 178
P E+ +K+ G IP L S N L+G I I L +++
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 179 LQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLS 217
L+LS N+ G+IP LG+ L+ LDL+ N +G+IP +
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 100/254 (39%), Gaps = 40/254 (15%)
Query: 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXK 61
L+ L L FN G IP + + T+L +S S N+L+G IP IGR
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 62 CSIPLSLGNLTSLIYIGISNNLLFGLIP-------------------------------- 89
+IP LG+ SLI++ ++ NL G IP
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 584
Query: 90 NEVGSLKSLSDLRLYN-NTLKNMNALS-------GSIPDEIRNLKSXXXXXXXXXXXXGS 141
+ G+L +R N L N + G N S G
Sbjct: 585 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 142 IPLSLGXXXXXXXXYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLV 201
IP +G N +SGSI +E+ +LR ++ L LS N LDG IP A+ L L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 202 VLDLSINKLSGSIP 215
+DLS N LSG IP
Sbjct: 705 EIDLSNNNLSGPIP 718
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 117/263 (44%), Gaps = 34/263 (12%)
Query: 5 LGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHE-IGRXXXXXXXXXXXXXXKCS 63
L LS N FYG++PP G + L+ L+ S N SG +P + + +
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 64 IPLSLGNLT-SLIYIGISNNLLFG-LIPNEVGSLK-SLSDLRLYNNTLKNMNALSGSIPD 120
+P SL NL+ SL+ + +S+N G ++PN + K +L +L L NN +G IP
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN------GFTGKIPP 409
Query: 121 EIRNLKSXXXXXXXXXXXXGSIPLSLGXXXXXXXXYFSTNALSGSISNEITNLRSISDLQ 180
+ N G+IP SLG N L G I E+ ++++ L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 181 LSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFAXXXXXXXXXXXENSLCDSIQK 240
L N L G IP L N L + LS N+L+G IP K
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP------------------------K 505
Query: 241 EIGDMKSLSILDLSSNKLNGSIP 263
IG +++L+IL LS+N +G+IP
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIP 528
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 126/319 (39%), Gaps = 36/319 (11%)
Query: 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXK 61
LK L +S NQF G IPP L L+ LS ++N+ +G IP +
Sbjct: 246 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS---------------- 287
Query: 62 CSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIP-D 120
G +L + +S N +G +P GS L + + N SG +P D
Sbjct: 288 -------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLE------SLALSSNNFSGELPMD 334
Query: 121 EIRNLKSXXXXXXXXXXXXGSIPLSLGXXXXXXXXY-FSTNALSGSI-SNEITNLR-SIS 177
+ ++ G +P SL S+N SG I N N + ++
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 178 DLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFAXXXXXXXXXXXENSLCDS 237
+L L N G IP L N +LV L LS N LSG+IP S N L
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 238 IQKEIGDMKSLSILDLSSNKLNGSIPXXXXXXXXXXXXXXXXXXXIVGEIPLGHGKFSSL 297
I +E+ +K+L L L N L G IP + GEIP G+ +L
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENL 513
Query: 298 IQLILTNNELSRQLSPELG 316
L L+NN S + ELG
Sbjct: 514 AILKLSNNSFSGNIPAELG 532
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXK 61
+ FL +S+N G IP EIG + +L +L+ N +SG IP E+G
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 62 CSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNN 106
IP ++ LT L I +SNN L G IP E+G ++ + NN
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 734
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 122/305 (40%), Gaps = 76/305 (24%)
Query: 5 LGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSI 64
L LSFN G+IP +G L+ L+ L N L G IP E+ I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 65 PLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRN 124
P L N T+L +I +SNN L G IP +G L++L+ L+L NN + SG+IP E+ +
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN------SFSGNIPAELGD 536
Query: 125 LKSXXXXXXXXXXXXGSIPLSLGXXXXXXXXYF--------------------------- 157
+S G+IP ++ F
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 158 -------------------STNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLI 198
++ G S N S+ L +S N L G IP +G++
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 199 KLVVLDLSINKLSGSIPLSFAXXXXXXXXXXXENSLCDSIQKEIGDMKSLSILDLSSNKL 258
L +L+L N +SGSIP E+GD++ L+ILDLSSNKL
Sbjct: 657 YLFILNLGHNDISGSIP------------------------DEVGDLRGLNILDLSSNKL 692
Query: 259 NGSIP 263
+G IP
Sbjct: 693 DGRIP 697
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 105/219 (47%), Gaps = 9/219 (4%)
Query: 2 LKFLGLSFNQFYGSIPPEIGHLTH-LKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXX 60
LK L LSFN+F G +P + +L+ L L S N SG I + +
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 61 KCS--IPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSI 118
+ IP +L N + L+ + +S N L G IP+ +GSL L DL+L+ +N L G I
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW------LNMLEGEI 458
Query: 119 PDEIRNLKSXXXXXXXXXXXXGSIPLSLGXXXXXXXXYFSTNALSGSISNEITNLRSISD 178
P E+ +K+ G IP L S N L+G I I L +++
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 179 LQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLS 217
L+LS N+ G+IP LG+ L+ LDL+ N +G+IP +
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 118/278 (42%), Gaps = 40/278 (14%)
Query: 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXK 61
L+ L L FN G IP + + T+L +S S N+L+G IP IGR
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 62 CSIPLSLGNLTSLIYIGISNNLLFGLIP----NEVGSLKS--LSDLR---LYNNTLK--- 109
+IP LG+ SLI++ ++ NL G IP + G + + ++ R + N+ +K
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 110 ----NMNALSGSIPDEIRNLKSXXXXXXXXXXXXGSIPLSLGXXXXXXXXYFSTNALSGS 165
N+ G +++ L + G + S N LSG
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 166 ISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFAXXXXXX 225
I EI ++ + L L N + GSIP +G+L L +LDLS NKL G IP
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP---------- 697
Query: 226 XXXXXENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIP 263
+ + + L+ +DLS+N L+G IP
Sbjct: 698 --------------QAMSALTMLTEIDLSNNNLSGPIP 721
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 117/263 (44%), Gaps = 34/263 (12%)
Query: 5 LGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHE-IGRXXXXXXXXXXXXXXKCS 63
L LS N FYG++PP G + L+ L+ S N SG +P + + +
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 64 IPLSLGNLT-SLIYIGISNNLLFG-LIPNEVGSLK-SLSDLRLYNNTLKNMNALSGSIPD 120
+P SL NL+ SL+ + +S+N G ++PN + K +L +L L NN +G IP
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN------GFTGKIPP 412
Query: 121 EIRNLKSXXXXXXXXXXXXGSIPLSLGXXXXXXXXYFSTNALSGSISNEITNLRSISDLQ 180
+ N G+IP SLG N L G I E+ ++++ L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 181 LSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFAXXXXXXXXXXXENSLCDSIQK 240
L N L G IP L N L + LS N+L+G IP K
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP------------------------K 508
Query: 241 EIGDMKSLSILDLSSNKLNGSIP 263
IG +++L+IL LS+N +G+IP
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIP 531
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 126/319 (39%), Gaps = 36/319 (11%)
Query: 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXK 61
LK L +S NQF G IPP L L+ LS ++N+ +G IP +
Sbjct: 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS---------------- 290
Query: 62 CSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIP-D 120
G +L + +S N +G +P GS L + + N SG +P D
Sbjct: 291 -------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLE------SLALSSNNFSGELPMD 337
Query: 121 EIRNLKSXXXXXXXXXXXXGSIPLSLGXXXXXXXXY-FSTNALSGSI-SNEITNLR-SIS 177
+ ++ G +P SL S+N SG I N N + ++
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 178 DLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFAXXXXXXXXXXXENSLCDS 237
+L L N G IP L N +LV L LS N LSG+IP S N L
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 238 IQKEIGDMKSLSILDLSSNKLNGSIPXXXXXXXXXXXXXXXXXXXIVGEIPLGHGKFSSL 297
I +E+ +K+L L L N L G IP + GEIP G+ +L
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENL 516
Query: 298 IQLILTNNELSRQLSPELG 316
L L+NN S + ELG
Sbjct: 517 AILKLSNNSFSGNIPAELG 535
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXK 61
+ FL +S+N G IP EIG + +L +L+ N +SG IP E+G
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 62 CSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNN 106
IP ++ LT L I +SNN L G IP E+G ++ + NN
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 737
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 7/206 (3%)
Query: 10 NQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSIPLSLG 69
N G IPP I LT L L + +SG IP + + ++P S+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 70 NLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSXX 129
+L +L+ I N + G IP+ GS +L+ + + N L+G IP NL +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFS-----KLFTSMTISRNRLTGKIPPTFANL-NLA 200
Query: 130 XXXXXXXXXXGSIPLSLGXXXXXXXXYFSTNALSGSISNEITNLRSISDLQLSENTLDGS 189
G + G + + N+L+ + ++ ++++ L L N + G+
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGT 259
Query: 190 IPLALGNLIKLVVLDLSINKLSGSIP 215
+P L L L L++S N L G IP
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 58/226 (25%)
Query: 64 IPLSLGNLTSL--IYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDE 121
IP SL NL L +YIG NNL+ G IP + L L L + + + SG+IPD
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNV------SGAIPDF 120
Query: 122 IRNLKSXXXXXXXXXXXXGSIPLSLGXXXXXXXXYFSTNALSGSISNEITNLRSISDLQL 181
+ +K+ FS NALSG++ I++L ++ +
Sbjct: 121 LSQIKTLVTLD------------------------FSYNALSGTLPPSISSLPNLVGITF 156
Query: 182 SENTLDGSIPLALGNLIKLVV-LDLSINKLSGSIPLSFA--------------------- 219
N + G+IP + G+ KL + +S N+L+G IP +FA
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216
Query: 220 --XXXXXXXXXXXENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIP 263
+NSL + K +G K+L+ LDL +N++ G++P
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP 261
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 85/223 (38%), Gaps = 54/223 (24%)
Query: 5 LGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRXXX-XXXXXXXXXXXKCS 63
L S+N G++PP I L +L ++F N++SG IP G
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 64 IPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTL----------KNMNA 113
IP + NL +L ++ +S N+L G GS K+ + L N+L KN+N
Sbjct: 190 IPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248
Query: 114 LSGSIPDEIRNLKSXXXXXXXXXXXXGSIPLSLGXXXXXXXXYFSTNALSGSISNEITNL 173
L ++RN N + G++ +T L
Sbjct: 249 L------DLRN-----------------------------------NRIYGTLPQGLTQL 267
Query: 174 RSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPL 216
+ + L +S N L G IP GNL + V + NK PL
Sbjct: 268 KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 15 SIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSIPLSLGNLTSL 74
+P EI +L++L++L S N+L+ L P E+G ++P GNL +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNL 318
Query: 75 IYIGISNNLL 84
++G+ N L
Sbjct: 319 QFLGVEGNPL 328
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 65 PLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNM 111
P +LT L Y+ + N L L L SL +LRLYNN LK +
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 2 LKFLGLSFNQFYGSIPPEI-GHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXX 60
L +L L+ NQ S+P + LT+LK L +NQL L P +
Sbjct: 87 LTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQ 144
Query: 61 KCSIPLSL-GNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIP 119
S+P + LT+L + +S N L L L L DLRLY N LK S+P
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-------SVP 197
Query: 120 DEI 122
D +
Sbjct: 198 DGV 200
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSIPLSLGNLTSLIYIGI 79
+ +L +L ++FS NQL+ + P + + + L NLT+L + +
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTL 114
Query: 80 SNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSG 116
NN + + P + +L +L+ L L +NT+ +++ALSG
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 149
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSIPLSLGNLTSLIYIGI 79
+ +L +L ++FS NQL+ + P + + + L NLT+L + +
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTL 114
Query: 80 SNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSG 116
NN + + P + +L +L+ L L +NT+ +++ALSG
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 149
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
Query: 23 LTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSIPLSLGNLTSLIYIG--IS 80
LT L+ LSFS NQ++ L P S+ L NL SLI IS
Sbjct: 150 LTSLQQLSFSSNQVTDLKPLA-NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 208
Query: 81 NNLLFGLIPN------------EVGSLKSLS---DLRLYNNTLKNMNALSG 116
+ G++ N ++G+L SL+ DL L NN + N+ LSG
Sbjct: 209 DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG 259
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSIPLSLGNLTSLIYIGI 79
+ +L +L ++FS NQL+ + P + + + L NLT+L + +
Sbjct: 64 VEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTL 119
Query: 80 SNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSG 116
NN + + P + +L +L+ L L +NT+ +++ALSG
Sbjct: 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 154
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSIPLSLGNLTSLIYIGI 79
+ +L +L ++FS NQL+ + P + + + L NLT+L + +
Sbjct: 63 VEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTL 118
Query: 80 SNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSG 116
NN + + P + +L +L+ L L +NT+ +++ALSG
Sbjct: 119 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 153
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSIPLSLGNLTSLIYIGI 79
+ +L +L ++FS NQL+ + P + + + L NLT+L + +
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTL 114
Query: 80 SNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSG 116
NN + + P + +L +L+ L L +NT+ +++ALSG
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 149
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSIPLSLGNLTSLIYIGI 79
+ +L +L ++FS NQL+ + P + + + L NLT+L + +
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTL 114
Query: 80 SNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSG 116
NN + + P + +L +L+ L L +NT+ +++ALSG
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 149
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
Query: 23 LTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSIPLSLGNLTSLIYIG--IS 80
LT L+ LSFS NQ++ L P S+ L NL SLI IS
Sbjct: 150 LTSLQQLSFSSNQVTDLKPLA-NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 208
Query: 81 NNLLFGLIPN------------EVGSLKSLS---DLRLYNNTLKNMNALSG 116
+ G++ N ++G+L SL+ DL L NN + N+ LSG
Sbjct: 209 DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG 259
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSIPLSLGNLTSLIYIGI 79
+ +L +L ++FS NQL+ + P + + + L NLT+L + +
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNNNQIADITPLANLTNLTGLTL 114
Query: 80 SNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSG 116
NN + + P + +L +L+ L L +NT+ +++ALSG
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 149
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 171 TNL-RSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSF 218
TNL +I++++L +NT+ P A KL +DLS N++S P +F
Sbjct: 28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 171 TNL-RSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSF 218
TNL +I++++L +NT+ P A KL +DLS N++S P +F
Sbjct: 28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
Query: 5 LGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRXXXXXXXXXXXXXXKCSI 64
L L NQF +P E+ + HL L+ S N++S L +C
Sbjct: 36 LYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 65 PLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLK---NMNALSGSIPDE 121
P + L SL + + N + + L +LS L + N L NM LS + E
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSE 154
Query: 122 IR 123
+
Sbjct: 155 YK 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.137 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,028,443
Number of Sequences: 62578
Number of extensions: 210862
Number of successful extensions: 594
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 111
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)