Query 045822
Match_columns 331
No_of_seqs 169 out of 2743
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 05:50:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8E-35 1.7E-39 282.5 20.2 254 2-263 120-373 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-34 2.7E-39 281.2 20.9 305 1-312 141-469 (968)
3 KOG4194 Membrane glycoprotein 100.0 7.9E-33 1.7E-37 235.5 1.5 309 2-318 104-439 (873)
4 KOG4194 Membrane glycoprotein 100.0 7.9E-32 1.7E-36 229.4 5.5 308 3-318 81-415 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.8E-28 4E-33 211.1 -3.7 306 2-321 9-318 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 3.9E-26 8.5E-31 196.9 -4.9 274 20-307 74-374 (1255)
7 PLN03210 Resistant to P. syrin 99.9 1.5E-21 3.3E-26 190.9 21.1 284 2-307 591-905 (1153)
8 PLN03210 Resistant to P. syrin 99.9 1.4E-21 3.1E-26 191.1 20.2 300 1-320 559-894 (1153)
9 KOG0472 Leucine-rich repeat pr 99.9 2.1E-24 4.5E-29 176.8 -6.8 289 2-308 185-541 (565)
10 KOG0472 Leucine-rich repeat pr 99.9 3.4E-24 7.3E-29 175.5 -7.0 299 5-322 96-531 (565)
11 PRK15387 E3 ubiquitin-protein 99.8 1.8E-19 4E-24 165.3 16.7 266 3-319 204-469 (788)
12 KOG0618 Serine/threonine phosp 99.8 2.4E-22 5.2E-27 180.2 -5.2 178 126-309 241-466 (1081)
13 cd00116 LRR_RI Leucine-rich re 99.8 4.4E-21 9.6E-26 164.0 1.4 254 4-259 2-291 (319)
14 KOG4237 Extracellular matrix p 99.8 6E-22 1.3E-26 162.0 -5.0 129 3-137 70-199 (498)
15 cd00116 LRR_RI Leucine-rich re 99.8 1.9E-20 4.2E-25 160.0 2.7 264 29-316 3-299 (319)
16 KOG4237 Extracellular matrix p 99.8 2.2E-21 4.7E-26 158.8 -3.8 274 25-307 68-358 (498)
17 KOG0618 Serine/threonine phosp 99.7 5.5E-20 1.2E-24 165.2 -2.7 268 25-305 242-510 (1081)
18 PRK15387 E3 ubiquitin-protein 99.7 7.9E-17 1.7E-21 148.1 14.0 243 1-291 223-465 (788)
19 PRK15370 E3 ubiquitin-protein 99.7 1.7E-16 3.7E-21 146.6 12.3 245 26-308 180-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 3.5E-16 7.5E-21 144.6 13.4 246 2-284 180-428 (754)
21 KOG0617 Ras suppressor protein 99.6 5.9E-17 1.3E-21 118.4 -3.7 166 149-321 32-198 (264)
22 KOG0617 Ras suppressor protein 99.5 5.6E-17 1.2E-21 118.6 -5.5 165 20-195 29-193 (264)
23 KOG1909 Ran GTPase-activating 99.4 8.1E-14 1.8E-18 113.1 0.8 252 44-308 26-311 (382)
24 KOG1909 Ran GTPase-activating 99.4 4.3E-14 9.3E-19 114.7 -2.1 239 19-259 25-311 (382)
25 KOG3207 Beta-tubulin folding c 99.3 6.8E-13 1.5E-17 110.9 0.6 210 70-284 119-339 (505)
26 KOG4658 Apoptotic ATPase [Sign 99.2 6.7E-12 1.4E-16 118.4 4.7 107 22-135 543-651 (889)
27 PF14580 LRR_9: Leucine-rich r 99.2 1.1E-11 2.3E-16 94.3 3.9 131 20-159 15-149 (175)
28 PF14580 LRR_9: Leucine-rich r 99.2 2.6E-11 5.7E-16 92.2 4.2 126 46-182 17-148 (175)
29 KOG4658 Apoptotic ATPase [Sign 99.1 7.6E-11 1.7E-15 111.3 6.6 105 48-159 545-651 (889)
30 KOG1259 Nischarin, modulator o 99.1 1.9E-11 4.2E-16 97.8 2.0 133 169-308 279-412 (490)
31 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.4E-16 103.8 0.4 14 221-234 300-313 (505)
32 KOG2982 Uncharacterized conser 99.0 1.1E-10 2.4E-15 93.3 1.6 236 14-254 35-287 (418)
33 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.6E-15 93.3 0.9 224 46-285 180-413 (490)
34 COG4886 Leucine-rich repeat (L 99.0 8.7E-10 1.9E-14 97.1 6.1 197 28-239 97-294 (394)
35 COG4886 Leucine-rich repeat (L 99.0 1.3E-09 2.8E-14 96.0 6.8 195 52-261 97-292 (394)
36 PF13855 LRR_8: Leucine rich r 99.0 6.3E-10 1.4E-14 69.7 3.4 58 2-59 3-60 (61)
37 PF13855 LRR_8: Leucine rich r 98.9 1.5E-09 3.2E-14 68.0 4.0 60 24-83 1-60 (61)
38 KOG0532 Leucine-rich repeat (L 98.9 5.5E-11 1.2E-15 102.9 -3.5 134 167-308 114-247 (722)
39 KOG2982 Uncharacterized conser 98.9 3.5E-10 7.5E-15 90.5 1.1 229 70-302 43-286 (418)
40 PLN03150 hypothetical protein; 98.8 7.8E-09 1.7E-13 95.6 7.5 107 25-137 419-526 (623)
41 KOG0532 Leucine-rich repeat (L 98.8 1.3E-10 2.8E-15 100.6 -4.2 190 27-232 78-270 (722)
42 KOG2120 SCF ubiquitin ligase, 98.8 8E-11 1.7E-15 94.1 -5.4 87 49-139 186-273 (419)
43 PLN03150 hypothetical protein; 98.8 1.7E-08 3.7E-13 93.4 8.7 108 200-308 420-528 (623)
44 KOG2120 SCF ubiquitin ligase, 98.7 2.9E-10 6.4E-15 91.0 -4.7 178 127-305 186-373 (419)
45 KOG0531 Protein phosphatase 1, 98.7 1E-09 2.2E-14 97.0 -3.0 242 47-309 71-319 (414)
46 KOG0531 Protein phosphatase 1, 98.6 2.3E-09 5E-14 94.7 -2.0 246 22-287 70-321 (414)
47 COG5238 RNA1 Ran GTPase-activa 98.6 6E-09 1.3E-13 82.5 -0.0 239 20-260 26-317 (388)
48 COG5238 RNA1 Ran GTPase-activa 98.6 2.3E-08 4.9E-13 79.3 2.4 138 172-309 155-317 (388)
49 KOG4341 F-box protein containi 98.5 1.6E-09 3.4E-14 90.7 -5.4 277 25-307 139-438 (483)
50 KOG4341 F-box protein containi 98.4 9.7E-09 2.1E-13 86.0 -5.2 298 2-304 140-461 (483)
51 KOG1859 Leucine-rich repeat pr 98.3 8.7E-09 1.9E-13 92.1 -7.0 128 150-284 164-292 (1096)
52 KOG3665 ZYG-1-like serine/thre 98.2 5.6E-07 1.2E-11 83.4 1.5 128 47-181 147-282 (699)
53 KOG4579 Leucine-rich repeat (L 98.1 1.3E-07 2.8E-12 67.3 -3.4 106 4-111 31-138 (177)
54 KOG3665 ZYG-1-like serine/thre 98.1 6.3E-07 1.4E-11 83.2 -0.0 151 48-206 122-283 (699)
55 KOG1644 U2-associated snRNP A' 98.1 6.3E-06 1.4E-10 62.8 5.0 107 49-162 43-152 (233)
56 KOG4579 Leucine-rich repeat (L 98.1 1.6E-07 3.4E-12 66.9 -3.6 112 152-266 29-142 (177)
57 PF13306 LRR_5: Leucine rich r 98.0 1.5E-05 3.2E-10 58.3 6.5 124 17-152 5-128 (129)
58 KOG1644 U2-associated snRNP A' 98.0 1.7E-05 3.7E-10 60.5 6.0 126 50-185 21-151 (233)
59 PF12799 LRR_4: Leucine Rich r 98.0 5.9E-06 1.3E-10 47.3 2.7 35 2-37 3-37 (44)
60 KOG1859 Leucine-rich repeat pr 98.0 1.2E-07 2.5E-12 85.2 -6.6 122 6-139 170-292 (1096)
61 PF12799 LRR_4: Leucine Rich r 97.9 8.8E-06 1.9E-10 46.6 2.0 37 272-309 2-38 (44)
62 PF13306 LRR_5: Leucine rich r 97.9 4.5E-05 9.7E-10 55.7 6.2 36 146-182 31-66 (129)
63 PRK15386 type III secretion pr 97.8 0.00019 4.1E-09 62.0 9.4 138 122-282 48-188 (426)
64 PRK15386 type III secretion pr 97.8 0.00022 4.8E-09 61.6 9.7 75 21-107 49-123 (426)
65 KOG1947 Leucine rich repeat pr 97.6 5E-06 1.1E-10 75.3 -2.4 130 46-181 186-328 (482)
66 KOG1947 Leucine rich repeat pr 97.5 8.4E-06 1.8E-10 73.9 -2.4 240 20-284 184-440 (482)
67 KOG2739 Leucine-rich acidic nu 97.4 6.5E-05 1.4E-09 59.8 1.9 106 47-159 42-152 (260)
68 KOG2123 Uncharacterized conser 97.1 2.8E-05 6.1E-10 62.4 -3.6 77 3-83 22-99 (388)
69 KOG2123 Uncharacterized conser 97.0 2.5E-05 5.4E-10 62.7 -4.5 106 22-132 17-123 (388)
70 KOG2739 Leucine-rich acidic nu 97.0 0.00021 4.6E-09 56.9 0.5 115 16-135 35-152 (260)
71 PF00560 LRR_1: Leucine Rich R 96.8 0.00058 1.2E-08 32.5 1.1 21 296-317 1-21 (22)
72 KOG3864 Uncharacterized conser 96.5 0.00019 4.1E-09 55.0 -2.9 81 224-304 103-185 (221)
73 PF00560 LRR_1: Leucine Rich R 95.7 0.0042 9.2E-08 29.5 0.7 13 1-13 1-13 (22)
74 PF13516 LRR_6: Leucine Rich r 95.3 0.0074 1.6E-07 29.3 0.7 23 294-316 1-23 (24)
75 PF13504 LRR_7: Leucine rich r 95.2 0.013 2.8E-07 25.8 1.3 14 295-308 1-14 (17)
76 KOG3864 Uncharacterized conser 95.2 0.0016 3.5E-08 50.1 -2.8 82 25-106 102-186 (221)
77 KOG4308 LRR-containing protein 94.5 9.1E-05 2E-09 66.1 -12.9 205 98-305 89-328 (478)
78 smart00370 LRR Leucine-rich re 89.8 0.36 7.7E-06 23.7 2.1 21 24-44 2-22 (26)
79 smart00369 LRR_TYP Leucine-ric 89.8 0.36 7.7E-06 23.7 2.1 21 24-44 2-22 (26)
80 KOG4308 LRR-containing protein 89.3 0.0026 5.6E-08 57.0 -10.2 183 128-310 89-305 (478)
81 smart00367 LRR_CC Leucine-rich 85.6 0.3 6.4E-06 24.0 0.3 17 294-310 1-18 (26)
82 KOG0473 Leucine-rich repeat pr 83.3 0.023 5E-07 45.0 -6.5 90 17-109 35-124 (326)
83 smart00368 LRR_RI Leucine rich 82.9 0.84 1.8E-05 22.9 1.3 21 246-266 2-22 (28)
84 KOG0473 Leucine-rich repeat pr 79.0 0.05 1.1E-06 43.2 -6.0 87 44-139 38-124 (326)
85 smart00364 LRR_BAC Leucine-ric 78.5 1.3 2.8E-05 21.9 1.0 18 295-313 2-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 77.1 2.3 5.1E-05 21.0 1.7 17 96-112 2-18 (26)
87 KOG3763 mRNA export factor TAP 69.2 2.5 5.4E-05 38.3 1.2 36 197-232 217-254 (585)
88 KOG3763 mRNA export factor TAP 67.4 3.8 8.2E-05 37.2 2.0 35 174-208 218-254 (585)
89 PF05725 FNIP: FNIP Repeat; I 20.0 1.8E+02 0.0039 16.2 3.0 7 223-229 13-19 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8e-35 Score=282.53 Aligned_cols=254 Identities=45% Similarity=0.677 Sum_probs=122.1
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
|++|++++|.+++..+. ..+++|++|++++|.+....+..++++++|++|++++|.+....|..+.++++|++|++++
T Consensus 120 L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 120 LRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred CCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence 55566665555543332 3345555555555555444455555555555555555555444455555555555555555
Q ss_pred ceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeeccc
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNA 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 161 (331)
|.+....|..+.++++|++|++++|.+.. .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSG------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCC------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 55444444455555555555555544331 233444455555555555554444444444444455555554444
Q ss_pred CCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcccccc
Q 045822 162 LSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKE 241 (331)
Q Consensus 162 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 241 (331)
+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 44444444444444444444444444334444444444444444444444444444444444444444444444333333
Q ss_pred ccCCCcccEEEccCCccccccc
Q 045822 242 IGDMKSLSILDLSSNKLNGSIP 263 (331)
Q Consensus 242 ~~~~~~L~~L~ls~~~~~~~~~ 263 (331)
+..+++|+.|++++|.+.+.++
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred HhCCCCCcEEECCCCeeEeeCC
Confidence 4444444444444444443333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-34 Score=281.15 Aligned_cols=305 Identities=39% Similarity=0.540 Sum_probs=171.9
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|++|++++|.+.+..+..+.++++|++|++++|.+....|..+.++++|++|++++|.+....|..+.++++|++|+++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 46777887777776777777777778888887777766667777777777777777777766666677777777777777
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecc
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTN 160 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 160 (331)
+|.+....|..+..+++|++|++++|.+.. .+|..+..+++|+.|++++|.+.+..|..+..+++|+.+++++|
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTG------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceecc------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 777666666666677777777777665442 33455555666666666665555445555555555555555555
Q ss_pred cCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCc----
Q 045822 161 ALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCD---- 236 (331)
Q Consensus 161 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---- 236 (331)
.+....+..+..+++|++|++.+|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 5544444445555555555555555444444444445555555555554444444444444444444444444433
Q ss_pred --------------------cccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCc
Q 045822 237 --------------------SIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSS 296 (331)
Q Consensus 237 --------------------~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 296 (331)
..+..+..+++|+.|++++|.+++..+..+..... |+.|++++|.+.+..+..+..+++
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL-VYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC-CCEEECcCCcccCccChhhccCCC
Confidence 33333334444555555555444444433333322 444444444444433333333444
Q ss_pred ceEEEeccceeccccC
Q 045822 297 LIQLILTNNELSRQLS 312 (331)
Q Consensus 297 L~~L~l~~~~~~~~~p 312 (331)
|+.|++++|++.+.+|
T Consensus 454 L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 454 LQMLSLARNKFFGGLP 469 (968)
T ss_pred CcEEECcCceeeeecC
Confidence 4444444444333333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=7.9e-33 Score=235.50 Aligned_cols=309 Identities=26% Similarity=0.279 Sum_probs=185.8
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCccc--------------------
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLK-------------------- 61 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------------------- 61 (331)
|+++++..|.++ ..|....-..+|+.|+|.+|.+..+....++.++.|+.|+++.|.|+
T Consensus 104 Lq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~ 182 (873)
T KOG4194|consen 104 LQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS 182 (873)
T ss_pred ceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc
Confidence 455555555554 34443334444555555555555444444555555555555555444
Q ss_pred ----ccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccc
Q 045822 62 ----CSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNT 137 (331)
Q Consensus 62 ----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 137 (331)
......|..+.+|-+|.++.|.++...+..|.++++|+.|++..|.++-+.+ ..|..+++|+.|.+..|+
T Consensus 183 N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~------ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 183 NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG------LTFQGLPSLQNLKLQRND 256 (873)
T ss_pred ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh------hhhcCchhhhhhhhhhcC
Confidence 3333344444444444444444444444444445555555555554443322 234444555555555555
Q ss_pred cCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCcc
Q 045822 138 LNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLS 217 (331)
Q Consensus 138 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 217 (331)
+.......|..+.++++++++.|.++......+..+..|++|+++.|.+...-.+.+..+++|+.|+++.|++.+..+..
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhH
Confidence 55444555556666677777766666555566666777777777777766555566666777777777777777666666
Q ss_pred ccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccc---hhhhhccccccEEEcccccccccCCCCCCCC
Q 045822 218 FASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIP---LSLTNLTNSLKVLSLSSNNIVGEIPLGHGKF 294 (331)
Q Consensus 218 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 294 (331)
|..+..|++|++++|.+......+|..+++|+.||++.|.+...+. ..+..+ ++|+.|++-||++......+|..+
T Consensus 337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl-~~LrkL~l~gNqlk~I~krAfsgl 415 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL-PSLRKLRLTGNQLKSIPKRAFSGL 415 (873)
T ss_pred HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc-hhhhheeecCceeeecchhhhccC
Confidence 7777777777777777765555566677788888888887653322 223333 348888888888876666788888
Q ss_pred CcceEEEeccceeccccChhhHHh
Q 045822 295 SSLIQLILTNNELSRQLSPELGSL 318 (331)
Q Consensus 295 ~~L~~L~l~~~~~~~~~p~~~~~~ 318 (331)
+.|++|++.+|.|...=|.+|.++
T Consensus 416 ~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 416 EALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred cccceecCCCCcceeecccccccc
Confidence 888888888888876667777665
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=7.9e-32 Score=229.45 Aligned_cols=308 Identities=25% Similarity=0.241 Sum_probs=222.4
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecc
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNN 82 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (331)
+.|++++|++...-...|.++|+|+.+++..|.+. .+|.+.....+|+.|++.+|.|+..-.+.+..++.|+.||++.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 56999999999888888999999999999999887 45666666778999999999998777778888899999999998
Q ss_pred eeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccC
Q 045822 83 LLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNAL 162 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 162 (331)
.+..+....|..-+++++|++++|.|++++. ..|..+.+|..|.++.|.++......|..+++|+.|++..|.+
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~------~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLET------GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhcccCCCCCCCCCceEEeecccccccccc------ccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 8877666667777889999999998887643 4577777888888888888766666777788888888887777
Q ss_pred CCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccc
Q 045822 163 SGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEI 242 (331)
Q Consensus 163 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 242 (331)
.......|..+++|+.|.+..|.+.......|-.+.++++|+++.|++......++.++..|++|+++.|.+..+-.+..
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 64445566777777777777777665556666666677777777776665555566666666666666666666556666
Q ss_pred cCCCcccEEEccCCccccccc-----------------------hhhhhccccccEEEcccccccc---cCCCCCCCCCc
Q 045822 243 GDMKSLSILDLSSNKLNGSIP-----------------------LSLTNLTNSLKVLSLSSNNIVG---EIPLGHGKFSS 296 (331)
Q Consensus 243 ~~~~~L~~L~ls~~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~ 296 (331)
+.+++|+.|+++.|+++.-.+ +..+...++|++|++++|.+.. .....|..+++
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 666666666666666653222 2222233356666666666653 23445667778
Q ss_pred ceEEEeccceeccccCh-hhHHh
Q 045822 297 LIQLILTNNELSRQLSP-ELGSL 318 (331)
Q Consensus 297 L~~L~l~~~~~~~~~p~-~~~~~ 318 (331)
|+.|.+.||++. +||. +|..+
T Consensus 394 LrkL~l~gNqlk-~I~krAfsgl 415 (873)
T KOG4194|consen 394 LRKLRLTGNQLK-SIPKRAFSGL 415 (873)
T ss_pred hhheeecCceee-ecchhhhccC
Confidence 888888888776 3443 54433
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.8e-28 Score=211.11 Aligned_cols=306 Identities=28% Similarity=0.405 Sum_probs=254.7
Q ss_pred ccEEeccccccc-CCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 2 LKFLGLSFNQFY-GSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 2 L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
.|-+|+++|.|. +.+|..+..+..++.|.|..+++. ..|+.++.+.+|++|.+.+|++. .+...+..+|.|+.+.++
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhh
Confidence 366899999998 779999999999999999988887 67888999999999999999987 566777889999999999
Q ss_pred cceeeec-CcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeec
Q 045822 81 NNLLFGL-IPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFST 159 (331)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 159 (331)
.|++... +|..+..+..|..|+++.|+++ ..|..+...++.-.|+++.|+|.......|.+++.|-.|++++
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-------hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 9887643 4677888999999999999988 4568888889999999999999865555677888889999999
Q ss_pred ccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCC-CCCCccccccCCccEEEccCCccCccc
Q 045822 160 NALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLS-GSIPLSFASLTSLTTLYLYENSLCDSI 238 (331)
Q Consensus 160 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~ 238 (331)
|.+. .++..+..+..|+.|.+++|.+.......+..+++|+.|.+++.+-+ ...|..+..+.+|..++++.|.+ ...
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~v 237 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIV 237 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-Ccc
Confidence 8886 56777788888999999999887666667777888888888887654 34777888888999999999887 456
Q ss_pred cccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceec-cccChhhHH
Q 045822 239 QKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELS-RQLSPELGS 317 (331)
Q Consensus 239 ~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~p~~~~~ 317 (331)
++.+..+++|+.|++|+|.++ +.......+-. ++.|+++.|+++ .+|.+++.++.|+.|++.+|+++ +-+|+++++
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~-lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWEN-LETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHHhh-hhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 677778899999999999988 55445555554 999999999998 88999999999999999999885 348888888
Q ss_pred hhhh
Q 045822 318 LIMA 321 (331)
Q Consensus 318 ~~~~ 321 (331)
+..+
T Consensus 315 L~~L 318 (1255)
T KOG0444|consen 315 LIQL 318 (1255)
T ss_pred hhhh
Confidence 7765
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=3.9e-26 Score=196.86 Aligned_cols=274 Identities=32% Similarity=0.423 Sum_probs=114.8
Q ss_pred cCCCCCccEEEeccCcccC-CChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCC
Q 045822 20 IGHLTHLKLLSFSKNQLSG-LIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSL 98 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 98 (331)
++.+|.|+.++++.|++.. -+|..+..+..|+.|++++|++. ..|..+.+.+++-+|++++|++..+....|.++..|
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence 3444444444444443321 12233334444555555555444 344444444445555555554443333334444444
Q ss_pred CeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCc-------------------------ccccccCCCCCc
Q 045822 99 SDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGS-------------------------IPLSLGNLTNLT 153 (331)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------------------------~~~~~~~~~~L~ 153 (331)
-.|++++|++. .+|.-+..+.+|+.|.+++|++... +|..+..+.+|+
T Consensus 153 LfLDLS~NrLe-------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 153 LFLDLSNNRLE-------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred hhhccccchhh-------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 44455544444 2233444444444444444443211 222222223333
Q ss_pred EEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCc
Q 045822 154 TLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENS 233 (331)
Q Consensus 154 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 233 (331)
.++++.|.+. ..++.+..+++|+.|.+++|.+++ .........+|++|+++.|+++ ..|..+..++.|+.|.+.+|+
T Consensus 226 dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 226 DVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred hccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc
Confidence 3333333332 233333333444444444443331 1111222333444444444444 344444444444444444444
Q ss_pred cCc-cccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEecccee
Q 045822 234 LCD-SIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNEL 307 (331)
Q Consensus 234 ~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 307 (331)
+.- ..+..++.+-+|+.+..++|.+. -+|+.++.+.. |+.|.++.|.+. .+|+++.-++.|+.|++..|+-
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~k-L~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK-LQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHH-HHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 331 22333444444444444444443 44444444443 555555555444 3444444445555555555543
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.5e-21 Score=190.86 Aligned_cols=284 Identities=23% Similarity=0.274 Sum_probs=159.0
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
||.|.+.++.+. .+|..+ ...+|++|+++++.+.. .+..+..+++|+.++++++.....+| .+..+++|+.|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 566666666555 344433 34566666666666552 33344556666666666554322333 355566666666666
Q ss_pred ceeeecCcccccCCCCCCeEEeecCc-ccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecc
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNT-LKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTN 160 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 160 (331)
|......|..+..+++|+.|++++|. +. .+|..+ ++++|+.|.+++|.....+|. ..++|+.+++.++
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~-------~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n 735 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLE-------ILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDET 735 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcC-------ccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCC
Confidence 55444455556666666666666542 22 222222 455566666655543222222 1234555555554
Q ss_pred cCCCccccc------------------------------ccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcC
Q 045822 161 ALSGSISNE------------------------------ITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKL 210 (331)
Q Consensus 161 ~~~~~~~~~------------------------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 210 (331)
.+.. ++.. ...+++|+.|++++|......+..+..+++|+.|++++|..
T Consensus 736 ~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 736 AIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred cccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 4331 1111 11234566667766655445566666777777777776654
Q ss_pred CCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCC
Q 045822 211 SGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLG 290 (331)
Q Consensus 211 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 290 (331)
....|... .+++|+.|++++|......+. ..++|+.|++++|.+. .+|..+..... |+.|++++|+-...++..
T Consensus 815 L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~-L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 815 LETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSN-LSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred cCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCC-CCEEECCCCCCcCccCcc
Confidence 33444433 466777777777654332222 2356777777777776 56666555543 888888887555566666
Q ss_pred CCCCCcceEEEecccee
Q 045822 291 HGKFSSLIQLILTNNEL 307 (331)
Q Consensus 291 ~~~~~~L~~L~l~~~~~ 307 (331)
...++.|+.+++++|.-
T Consensus 889 ~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 889 ISKLKHLETVDFSDCGA 905 (1153)
T ss_pred cccccCCCeeecCCCcc
Confidence 77777788888887743
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.4e-21 Score=191.07 Aligned_cols=300 Identities=24% Similarity=0.249 Sum_probs=220.2
Q ss_pred CccEEeccccc------ccCCCCcccCCCC-CccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCc
Q 045822 1 MLKFLGLSFNQ------FYGSIPPEIGHLT-HLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTS 73 (331)
Q Consensus 1 ~L~~L~l~~~~------~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 73 (331)
+|+.|.+..+. +...++..+..+| +|+.|.+.++.+.. .|..+ ...+|+.|++.++.+. .++..+..+++
T Consensus 559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~ 635 (1153)
T PLN03210 559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTG 635 (1153)
T ss_pred cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCC
Confidence 46778775543 2234566677765 59999999988764 45555 4679999999999987 57778889999
Q ss_pred ccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCc
Q 045822 74 LIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLT 153 (331)
Q Consensus 74 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 153 (331)
|+.++++++......| .+..+++|++|++.+|.... .+|..+..+++|+.|++++|.....+|..+ .+++|+
T Consensus 636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~------~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV------ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc------ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 9999999876444445 47789999999999875321 567889999999999999986544556544 688999
Q ss_pred EEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcch-----------------------------hhhCCCCccEEE
Q 045822 154 TLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPL-----------------------------ALGNLIKLVVLD 204 (331)
Q Consensus 154 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----------------------------~~~~~~~L~~L~ 204 (331)
.+.+++|......+.. ..+|++|++.++.+...... ....+++|+.|+
T Consensus 708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred EEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 9999998654444332 35688888888875432110 011235678888
Q ss_pred eecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEccccccc
Q 045822 205 LSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIV 284 (331)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 284 (331)
+++|......|..+..+++|+.|++++|...+..+..+ .+++|+.|++++|.....++. ...+++.|++++|.+.
T Consensus 785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIE 859 (1153)
T ss_pred CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc----cccccCEeECCCCCCc
Confidence 88887666778888888999999998886555444443 578899999998876544443 2345899999999887
Q ss_pred ccCCCCCCCCCcceEEEeccceeccccChhhHHhhh
Q 045822 285 GEIPLGHGKFSSLIQLILTNNELSRQLSPELGSLIM 320 (331)
Q Consensus 285 ~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~~ 320 (331)
.+|..+..+++|+.|++++|.-.+.+|..+..+..
T Consensus 860 -~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 860 -EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred -cChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 67888899999999999998666677776655433
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=2.1e-24 Score=176.75 Aligned_cols=289 Identities=31% Similarity=0.431 Sum_probs=177.9
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCccccccccc-ccCCCcccEEEee
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLS-LGNLTSLIYIGIS 80 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~ 80 (331)
|++||...|.++ .+|..++.+.+|+.|+++.|++. +.| .|.+|..|+.+.+..|++. .+|.. ..+++++.+||++
T Consensus 185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence 344444444444 34444555556666666666555 233 4555666666666666665 34433 3367777777777
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCccc-----------------
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIP----------------- 143 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----------------- 143 (331)
++++. ..|..+..+.+|++|++++|.++ .+|..++++ +|+.|.+.||++...-.
T Consensus 261 dNklk-e~Pde~clLrsL~rLDlSNN~is-------~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~ 331 (565)
T KOG0472|consen 261 DNKLK-EVPDEICLLRSLERLDLSNNDIS-------SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSK 331 (565)
T ss_pred ccccc-cCchHHHHhhhhhhhcccCCccc-------cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHh
Confidence 77765 34566666777777777777766 445667777 67777777765421000
Q ss_pred ---------------------ccc---cCCCCCcEEEeecccCCCcccccccCC--CCCCEEEccCCcC-----------
Q 045822 144 ---------------------LSL---GNLTNLTTLYFSTNALSGSISNEITNL--RSISDLQLSENTL----------- 186 (331)
Q Consensus 144 ---------------------~~~---~~~~~L~~l~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~----------- 186 (331)
..+ ....+.+.+++++-.++....+.|... .-+..+++++|++
T Consensus 332 ~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lk 411 (565)
T KOG0472|consen 332 IKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELK 411 (565)
T ss_pred hccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHH
Confidence 000 001123344444333332222222111 1134444444432
Q ss_pred ------------CCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEcc
Q 045822 187 ------------DGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLS 254 (331)
Q Consensus 187 ------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls 254 (331)
.++++..++.+++|..|++++|-+. ..|..+..+..|+.++++.|.+. ..+..+.....++.+-.+
T Consensus 412 elvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas 489 (565)
T KOG0472|consen 412 ELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLAS 489 (565)
T ss_pred HHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhc
Confidence 2345556677888888888888777 56667777777888888888773 445555566777777777
Q ss_pred CCccccccchh-hhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceec
Q 045822 255 SNKLNGSIPLS-LTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 255 ~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 308 (331)
+|++. .+++. +.... +|..||+.+|.+. .+|..+++|.+|++|.++||++.
T Consensus 490 ~nqi~-~vd~~~l~nm~-nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 490 NNQIG-SVDPSGLKNMR-NLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccc-ccChHHhhhhh-hcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 78877 55554 44444 5999999999997 78999999999999999999997
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=3.4e-24 Score=175.54 Aligned_cols=299 Identities=33% Similarity=0.490 Sum_probs=158.8
Q ss_pred EecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeeccee
Q 045822 5 LGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLL 84 (331)
Q Consensus 5 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 84 (331)
++.+.+++. .+|..+.+.+++..++++.+.+. ..++.++.+-.+..++..+|+++ ..|..+.++.++..+++.++.+
T Consensus 96 l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l 172 (565)
T KOG0472|consen 96 LNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKL 172 (565)
T ss_pred hhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccch
Confidence 334444444 44455555555666666555554 33444445555555555555555 4555555555555555555555
Q ss_pred eecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCC
Q 045822 85 FGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSG 164 (331)
Q Consensus 85 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 164 (331)
....+..+. +..|++++...|.++ ++|..++.+.+|+.|++..|.+. ..| .|.++..|+.++++.|.+..
T Consensus 173 ~~l~~~~i~-m~~L~~ld~~~N~L~-------tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~ 242 (565)
T KOG0472|consen 173 KALPENHIA-MKRLKHLDCNSNLLE-------TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM 242 (565)
T ss_pred hhCCHHHHH-HHHHHhcccchhhhh-------cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh
Confidence 433333222 555555555555444 34455555555555555555554 222 34444444444444444432
Q ss_pred cccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCc-----------
Q 045822 165 SISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENS----------- 233 (331)
Q Consensus 165 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------- 233 (331)
...+...+++.+..|++.+|.+. ..|..+..+.+|++|++++|.++ ..|..++++ .|+.|-+.||.
T Consensus 243 lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred hHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcc
Confidence 22222334444444454444443 23334444444444444444444 333334443 44444444443
Q ss_pred --------------------------------------------------------------------------------
Q 045822 234 -------------------------------------------------------------------------------- 233 (331)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (331)
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch
Confidence
Q ss_pred cCc-----------------------cccccccCCCcccEEEccCCccccccchhhhhccccccEEEccccccc------
Q 045822 234 LCD-----------------------SIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIV------ 284 (331)
Q Consensus 234 ~~~-----------------------~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------ 284 (331)
+.+ ..+..+..+++|..|++++|.+. .+|..++.... |+.|+++.|++.
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~-Lq~LnlS~NrFr~lP~~~ 477 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR-LQTLNLSFNRFRMLPECL 477 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhh-hheecccccccccchHHH
Confidence 110 11122233567777777776655 67777777665 888888776553
Q ss_pred ----------------ccC-CCCCCCCCcceEEEeccceeccccChhhHHhhhhc
Q 045822 285 ----------------GEI-PLGHGKFSSLIQLILTNNELSRQLSPELGSLIMAI 322 (331)
Q Consensus 285 ----------------~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~ 322 (331)
+.+ +..+..+.+|..|++.+|.+. .+|+.+++++.+.
T Consensus 478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR 531 (565)
T ss_pred hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence 111 223677888999999999887 8888888887653
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=1.8e-19 Score=165.30 Aligned_cols=266 Identities=25% Similarity=0.323 Sum_probs=203.1
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecc
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNN 82 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (331)
.+|+++++.++ .+|..+. ++|+.|++.+|++..+ |. .+++|++|++++|.+. .+|.. .++|+.|++++|
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence 47899999998 4666554 4799999999998854 33 3579999999999988 44543 468999999999
Q ss_pred eeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccC
Q 045822 83 LLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNAL 162 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 162 (331)
.+... +.. ..+|+.|++.+|.++.++ . ..++|+.|++++|.+.. +|. ...+|+.|.+.+|.+
T Consensus 273 ~L~~L-p~l---p~~L~~L~Ls~N~Lt~LP-------~---~p~~L~~LdLS~N~L~~-Lp~---lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 273 PLTHL-PAL---PSGLCKLWIFGNQLTSLP-------V---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQL 334 (788)
T ss_pred chhhh-hhc---hhhcCEEECcCCcccccc-------c---cccccceeECCCCcccc-CCC---CcccccccccccCcc
Confidence 87643 332 357889999999888543 2 23689999999999884 333 234688899999888
Q ss_pred CCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccc
Q 045822 163 SGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEI 242 (331)
Q Consensus 163 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 242 (331)
.. ++. ...+|++|++++|.+.. .+. ..++|+.|++++|.+. .+|.. ..+|+.|++++|.+...+.
T Consensus 335 ~~-LP~---lp~~Lq~LdLS~N~Ls~-LP~---lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~--- 399 (788)
T PRK15387 335 TS-LPT---LPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPV--- 399 (788)
T ss_pred cc-ccc---cccccceEecCCCccCC-CCC---CCcccceehhhccccc-cCccc---ccccceEEecCCcccCCCC---
Confidence 74 332 12479999999999874 332 2357889999999988 34532 3589999999999875332
Q ss_pred cCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHhh
Q 045822 243 GDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSLI 319 (331)
Q Consensus 243 ~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~ 319 (331)
..++|+.|++++|.+. .+|.. +.+|+.|++++|++. .+|..+..++.|+.|++++|++++..|+.+..+.
T Consensus 400 -l~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 400 -LPSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred -cccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 2478999999999988 45532 335899999999998 7898999999999999999999999888885543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=2.4e-22 Score=180.20 Aligned_cols=178 Identities=28% Similarity=0.340 Sum_probs=86.0
Q ss_pred cCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccc-----------------------cccCCCCCCEEEcc
Q 045822 126 KSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISN-----------------------EITNLRSISDLQLS 182 (331)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-----------------------~l~~~~~L~~L~l~ 182 (331)
.++++++++.+.+. ..|..+..+.+|+.+...+|.+. ..+. .....+.|++|++.
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 46777888888776 45566777778888887777664 2333 33334555566665
Q ss_pred CCcCCCCcchhhhC-------------------------CCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcc
Q 045822 183 ENTLDGSIPLALGN-------------------------LIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDS 237 (331)
Q Consensus 183 ~~~~~~~~~~~~~~-------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 237 (331)
.|.+.......+.. ++.|+.|.+.+|.+++..-..+-.++.|+.|++++|.+...
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 55544322211111 11233333334444333222333344444444444444433
Q ss_pred ccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceecc
Q 045822 238 IQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSR 309 (331)
Q Consensus 238 ~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 309 (331)
+...+..++.|+.|++|||.++ .++..+..+.. |++|...+|++. ..| .+..++.|+.+|++.|+++.
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~-L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGR-LHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhh-hHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 4444444444444444444444 33333333322 444444444443 333 45555666666666665543
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=4.4e-21 Score=163.99 Aligned_cols=254 Identities=26% Similarity=0.270 Sum_probs=138.4
Q ss_pred EEeccccccc-CCCCcccCCCCCccEEEeccCcccCC----ChhhhccCcCCCeeeccCCcccc------cccccccCCC
Q 045822 4 FLGLSFNQFY-GSIPPEIGHLTHLKLLSFSKNQLSGL----IPHEIGRLSSLNGLSLYSNFLKC------SIPLSLGNLT 72 (331)
Q Consensus 4 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~ 72 (331)
.|+|+.+.++ ......+..++.|++++++++.+... .+..+...+.+++++++++.+.. .++..+.+++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 5677777776 44555567778899999999887532 34445567778999998877651 2334566677
Q ss_pred cccEEEeecceeeecCcccccCCC---CCCeEEeecCcccCCCCccCCchhhhhCC-cCCcEEEccccccCCc----ccc
Q 045822 73 SLIYIGISNNLLFGLIPNEVGSLK---SLSDLRLYNNTLKNMNALSGSIPDEIRNL-KSLLNLQLDNNTLNGS----IPL 144 (331)
Q Consensus 73 ~L~~L~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~----~~~ 144 (331)
+|+.|++++|.+....+..+..+. +|++|+++++.+...+ ...+...+..+ ++|+.+++++|.+... ...
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~--~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG--LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH--HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 888888888777544444444333 3888888877655311 01222345555 6777777777766522 122
Q ss_pred cccCCCCCcEEEeecccCCCc----ccccccCCCCCCEEEccCCcCCCCc----chhhhCCCCccEEEeecCcCCCCCCc
Q 045822 145 SLGNLTNLTTLYFSTNALSGS----ISNEITNLRSISDLQLSENTLDGSI----PLALGNLIKLVVLDLSINKLSGSIPL 216 (331)
Q Consensus 145 ~~~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~ 216 (331)
.+..+++|+++++++|.+.+. ....+...+.|++|++++|.+.+.. ...+..+++|++|++++|.+.+....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 233445666666666655521 1122334455666666665543221 12233445555555555554431111
Q ss_pred ccc-----ccCCccEEEccCCccCcc----ccccccCCCcccEEEccCCccc
Q 045822 217 SFA-----SLTSLTTLYLYENSLCDS----IQKEIGDMKSLSILDLSSNKLN 259 (331)
Q Consensus 217 ~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~ 259 (331)
.+. ..+.|++|++++|.+++. ....+..+++|+.+++++|.+.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 111 124555555555544321 1122333345555555555544
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=6e-22 Score=162.03 Aligned_cols=129 Identities=28% Similarity=0.348 Sum_probs=99.2
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccC-CcccccccccccCCCcccEEEeec
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYS-NFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
.++.|..|+|+...+.+|+.+++|++|+|+.|+|..+.|++|.+++.|..|.+.+ |+|+......|.++..++.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 3567778888888888888888888888888888888888888888887777776 778755555788888888888888
Q ss_pred ceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccc
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNT 137 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 137 (331)
+.+.-+..+.|..++++..|.+..|.+..+.. ..+..+..++.+.+..+.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~------~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICK------GTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhcc------ccccchhccchHhhhcCc
Confidence 77777777778888888888888887765432 245666666776666554
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=1.9e-20 Score=160.03 Aligned_cols=264 Identities=25% Similarity=0.256 Sum_probs=137.1
Q ss_pred EEeccCcccC-CChhhhccCcCCCeeeccCCcccc----cccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEe
Q 045822 29 LSFSKNQLSG-LIPHEIGRLSSLNGLSLYSNFLKC----SIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRL 103 (331)
Q Consensus 29 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 103 (331)
|+|.++.+.. .....+..++.|+.++++++.+.. .++..+...+.++.++++++.+..
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~----------------- 65 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR----------------- 65 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-----------------
Confidence 4555555542 233444555667777777766532 133334455556666665544331
Q ss_pred ecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCC---CCCcEEEeecccCCC----cccccccCC-CC
Q 045822 104 YNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNL---TNLTTLYFSTNALSG----SISNEITNL-RS 175 (331)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~----~~~~~l~~~-~~ 175 (331)
.+.....++..+..+++|+.|+++++.+....+..+..+ ++|+.+++++|.+.. .....+..+ ++
T Consensus 66 -------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~ 138 (319)
T cd00116 66 -------IPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138 (319)
T ss_pred -------cchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCC
Confidence 000001222344445555555555555442222222222 236666666555442 112223344 56
Q ss_pred CCEEEccCCcCCCC----cchhhhCCCCccEEEeecCcCCCCC----CccccccCCccEEEccCCccCccc----ccccc
Q 045822 176 ISDLQLSENTLDGS----IPLALGNLIKLVVLDLSINKLSGSI----PLSFASLTSLTTLYLYENSLCDSI----QKEIG 243 (331)
Q Consensus 176 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~ 243 (331)
|+++++++|.+... ....+..++.|++|++++|.+.+.. +..+..+++|++|++++|.+.+.. ...+.
T Consensus 139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~ 218 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA 218 (319)
T ss_pred ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence 66666666665421 2223445566777777777665321 122334457777777777765432 23345
Q ss_pred CCCcccEEEccCCccccccchhhhhcc----ccccEEEcccccccc----cCCCCCCCCCcceEEEeccceeccccChhh
Q 045822 244 DMKSLSILDLSSNKLNGSIPLSLTNLT----NSLKVLSLSSNNIVG----EIPLGHGKFSSLIQLILTNNELSRQLSPEL 315 (331)
Q Consensus 244 ~~~~L~~L~ls~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~ 315 (331)
.+++|+.|++++|.+.+.....+.... .+|+.|++++|.+.. .+...+..+++|+.+++++|.+++.-...+
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 567777777777777654444433321 347778877777752 233345555778888888887775544444
Q ss_pred H
Q 045822 316 G 316 (331)
Q Consensus 316 ~ 316 (331)
.
T Consensus 299 ~ 299 (319)
T cd00116 299 A 299 (319)
T ss_pred H
Confidence 3
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=2.2e-21 Score=158.80 Aligned_cols=274 Identities=25% Similarity=0.253 Sum_probs=151.9
Q ss_pred CccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeec-ceeeecCcccccCCCCCCeEEe
Q 045822 25 HLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN-NLLFGLIPNEVGSLKSLSDLRL 103 (331)
Q Consensus 25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l 103 (331)
.-..+.|..|+|..+.+.+|+.+++|++|++++|.|+...|.+|..++.+..|.+.+ ++++......|.++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456677777888777778888888888888888888777777788888777777666 7777666677777778887777
Q ss_pred ecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCC------------ccccccc
Q 045822 104 YNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSG------------SISNEIT 171 (331)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~------------~~~~~l~ 171 (331)
.-+++.. .....+..++++..|.+.++.+.......|..+..++.+.+..+.+.. ..+..++
T Consensus 148 Nan~i~C------ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 148 NANHINC------IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred Chhhhcc------hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 7776654 234667777888888888777764444456666666666666554210 0000111
Q ss_pred CCCCCCEEEccCCcCCCCcchhhhCCCCccEE--Ee-ecCcCCCCCC-ccccccCCccEEEccCCccCccccccccCCCc
Q 045822 172 NLRSISDLQLSENTLDGSIPLALGNLIKLVVL--DL-SINKLSGSIP-LSFASLTSLTTLYLYENSLCDSIQKEIGDMKS 247 (331)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L--~l-~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 247 (331)
.........+.+.++.+.....|... ++.+ .+ +.+......| ..|..+++|+.+++++|.++++-..+|.....
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 11111111122222221111111110 1111 00 1111111111 22445555556666665555555555555555
Q ss_pred ccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEecccee
Q 045822 248 LSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNEL 307 (331)
Q Consensus 248 L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 307 (331)
++.|.+..|++. .+...++...+.|+.|++.+|+++...+.+|....+|.+|++-.|++
T Consensus 300 l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 300 LQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 555555555554 33333333334455566666655555555555555555555555544
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=5.5e-20 Score=165.24 Aligned_cols=268 Identities=31% Similarity=0.349 Sum_probs=159.3
Q ss_pred CccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEee
Q 045822 25 HLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLY 104 (331)
Q Consensus 25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (331)
++++++++.+++.. .|+++..|.+|+.+...+|++. ..|..+....+|+.+.+..|.+.. .|....+...|++|++.
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeeh
Confidence 45666666665553 2355566666666666666554 455555555566666665555542 23444455666666666
Q ss_pred cCcccCCCCccCCchhhhhCCcC-CcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccC
Q 045822 105 NNTLKNMNALSGSIPDEIRNLKS-LLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSE 183 (331)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 183 (331)
.|.+...+. ..+..... ++.++.+.+++.......=...+.|+.|++.+|.+++.....+...+.|+.|++++
T Consensus 319 ~N~L~~lp~------~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 319 SNNLPSLPD------NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred hccccccch------HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 665553321 11111111 33444444444311100111234567777777777777777777778888888888
Q ss_pred CcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccc
Q 045822 184 NTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIP 263 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~ 263 (331)
|.+..+....+.+++.|++|+++||.+. .+|..+..++.|++|...+|.+...+ .+..++.|+.+|++.|++.....
T Consensus 393 NrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 393 NRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred cccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhh
Confidence 8777667777778888888888888877 66677777888888888777775433 55667888888888887764333
Q ss_pred hhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccc
Q 045822 264 LSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNN 305 (331)
Q Consensus 264 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 305 (331)
...... ++|++||++||.-.......+..+..+...+++-+
T Consensus 470 ~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 470 PEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 322222 45888888888643233334444445555554444
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=7.9e-17 Score=148.13 Aligned_cols=243 Identities=26% Similarity=0.290 Sum_probs=180.4
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|+.|++.+|+++. +|. ..++|++|++++|++..+ |. ..++|+.|++.+|.+. .++.. ..+|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC---cccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence 47899999999984 443 358999999999998854 33 2468999999999887 44443 2578899999
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecc
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTN 160 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 160 (331)
+|.+... |. ..++|+.|++++|.+..++. + ..+|+.|.+.+|.+.. +|. ...+|+.|++++|
T Consensus 291 ~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~----l------p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N 352 (788)
T PRK15387 291 GNQLTSL-PV---LPPGLQELSVSDNQLASLPA----L------PSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDN 352 (788)
T ss_pred CCccccc-cc---cccccceeECCCCccccCCC----C------cccccccccccCcccc-ccc---cccccceEecCCC
Confidence 9988744 33 24789999999998885532 1 2457788899988873 442 1257999999999
Q ss_pred cCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccc
Q 045822 161 ALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQK 240 (331)
Q Consensus 161 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 240 (331)
.+.. ++.. .++|+.|.+++|.+.. .+. ...+|+.|++++|.+.. .|.. .++|+.|++++|.+...+ .
T Consensus 353 ~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP-~ 419 (788)
T PRK15387 353 QLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLP-M 419 (788)
T ss_pred ccCC-CCCC---Ccccceehhhcccccc-Ccc---cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCC-c
Confidence 8874 3332 3568888999988764 332 23579999999999883 4432 368999999999987532 2
Q ss_pred cccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCC
Q 045822 241 EIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGH 291 (331)
Q Consensus 241 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 291 (331)
.+.+|+.|++++|+++ .+|..+..+.. ++.|++++|++.+..+..+
T Consensus 420 ---l~~~L~~L~Ls~NqLt-~LP~sl~~L~~-L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 420 ---LPSGLLSLSVYRNQLT-RLPESLIHLSS-ETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ---chhhhhhhhhccCccc-ccChHHhhccC-CCeEECCCCCCCchHHHHH
Confidence 2367899999999998 78888777665 9999999999987654433
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=1.7e-16 Score=146.63 Aligned_cols=245 Identities=24% Similarity=0.384 Sum_probs=137.4
Q ss_pred ccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeec
Q 045822 26 LKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYN 105 (331)
Q Consensus 26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 105 (331)
...|+++++++..+ |..+. ++|+.|++++|.+. .+|..+. .+|++|++++|.+... |..+. ++|+.|++++
T Consensus 180 ~~~L~L~~~~LtsL-P~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTI-PACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-PATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcC-Ccccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-Chhhh--ccccEEECcC
Confidence 45566665555532 22221 35666666666665 3343332 3566666666665532 33221 3566666666
Q ss_pred CcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCc
Q 045822 106 NTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENT 185 (331)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 185 (331)
|.+..+ |..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++. ++..+. +.|++|++++|.
T Consensus 251 N~L~~L-------P~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 251 NRITEL-------PERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNS 315 (754)
T ss_pred CccCcC-------ChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCc
Confidence 665533 22222 35666666666665 3343332 456777777666653 222221 356667777776
Q ss_pred CCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchh
Q 045822 186 LDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLS 265 (331)
Q Consensus 186 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~ 265 (331)
+.. .+..+ .++|+.|.+++|.+.. +|..+. ++|+.|++++|.+... +..+ .++|+.|++++|.+. .+|..
T Consensus 316 Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 316 LTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred ccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCC-CCCHh
Confidence 653 22222 2567777777777663 444332 5777777777776542 2222 367777888877776 55554
Q ss_pred hhhccccccEEEcccccccccCCCCC----CCCCcceEEEeccceec
Q 045822 266 LTNLTNSLKVLSLSSNNIVGEIPLGH----GKFSSLIQLILTNNELS 308 (331)
Q Consensus 266 ~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~ 308 (331)
+.. +|+.|++++|++. .+|..+ ..++.+..|++.+|++.
T Consensus 386 l~~---sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 386 LPA---ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHH---HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 432 3777777777776 444433 33467777888888776
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=3.5e-16 Score=144.63 Aligned_cols=246 Identities=25% Similarity=0.400 Sum_probs=180.1
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
..+|+++++.++ .+|..+. ++++.|++++|++... |..+. ++|++|++++|.+. .+|..+. ++|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 467888888888 3554443 5799999999998854 33332 58999999999987 5565543 4799999999
Q ss_pred ceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeeccc
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNA 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 161 (331)
|.+.. .|..+. .+|+.|++++|.+..++ ..+. ++|+.|++++|.+.. +|..+. +.|+.|++++|.
T Consensus 251 N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP-------~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 251 NRITE-LPERLP--SALQSLDLFHNKISCLP-------ENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNS 315 (754)
T ss_pred CccCc-CChhHh--CCCCEEECcCCccCccc-------cccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCc
Confidence 99874 354443 58999999999887543 3332 579999999998874 444332 478889999998
Q ss_pred CCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcccccc
Q 045822 162 LSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKE 241 (331)
Q Consensus 162 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 241 (331)
+.. ++..+ .++|+.|.+++|.+.. .+..+ .++|+.|++++|.+. ..|..+. +.|++|++++|.+...+ ..
T Consensus 316 Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP-~~ 385 (754)
T PRK15370 316 LTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLP-EN 385 (754)
T ss_pred ccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCC-Hh
Confidence 874 33332 3689999999998874 44433 368999999999988 4555443 68999999999987543 33
Q ss_pred ccCCCcccEEEccCCccccccchhhhhc---cccccEEEccccccc
Q 045822 242 IGDMKSLSILDLSSNKLNGSIPLSLTNL---TNSLKVLSLSSNNIV 284 (331)
Q Consensus 242 ~~~~~~L~~L~ls~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~ 284 (331)
+. +.|+.|++++|++. .+|..+..+ .+++..+++.+|++.
T Consensus 386 l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 386 LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 32 57999999999987 666544333 234889999999886
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=5.9e-17 Score=118.44 Aligned_cols=166 Identities=32% Similarity=0.542 Sum_probs=116.4
Q ss_pred CCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEE
Q 045822 149 LTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLY 228 (331)
Q Consensus 149 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 228 (331)
+.+++.+.+++|+++ ..+..+..+.+|+.|.+.+|.+. ..+..++.++.|+.|++.-|++. ..|..|+.+|.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 345555666666665 34445566666666666666665 34555666677777777666666 6677777777777777
Q ss_pred ccCCccCc-cccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEecccee
Q 045822 229 LYENSLCD-SIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNEL 307 (331)
Q Consensus 229 l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 307 (331)
+..|++.+ ..+..|..+..|+.|.++.|++. .+|.++..... |+.|.+++|.+. .+|..++.+..|++|.|.+|++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~-lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN-LQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc-eeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 77777655 34555666778888888888876 66777777665 888888888877 6777888888888888888888
Q ss_pred ccccChhhHHhhhh
Q 045822 308 SRQLSPELGSLIMA 321 (331)
Q Consensus 308 ~~~~p~~~~~~~~~ 321 (331)
+ .+|+.++++..+
T Consensus 186 ~-vlppel~~l~l~ 198 (264)
T KOG0617|consen 186 T-VLPPELANLDLV 198 (264)
T ss_pred e-ecChhhhhhhhh
Confidence 7 777777776554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=5.6e-17 Score=118.58 Aligned_cols=165 Identities=30% Similarity=0.491 Sum_probs=123.6
Q ss_pred cCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCC
Q 045822 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLS 99 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 99 (331)
+-++.+++.|.++.|++..+ |..++.+.+|+.|++.+|++. .+|..+..+++|+.|+++.+.+. ..|..|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 45666777888888887744 445677788888888888887 67777888888888888777664 5677788888888
Q ss_pred eEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEE
Q 045822 100 DLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDL 179 (331)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L 179 (331)
.|++..|.+..- .+|..|..+..|+.|++++|.+. ..|..++++++|+.+.+..|++- .++..++.+..|++|
T Consensus 106 vldltynnl~e~-----~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 106 VLDLTYNNLNEN-----SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred hhhccccccccc-----cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 888877765532 56677777788888888888776 67777888888888888887766 567777778888888
Q ss_pred EccCCcCCCCcchhhh
Q 045822 180 QLSENTLDGSIPLALG 195 (331)
Q Consensus 180 ~l~~~~~~~~~~~~~~ 195 (331)
++.+|.+. ..+..++
T Consensus 179 hiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 179 HIQGNRLT-VLPPELA 193 (264)
T ss_pred hcccceee-ecChhhh
Confidence 88888776 4444443
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=8.1e-14 Score=113.12 Aligned_cols=252 Identities=20% Similarity=0.226 Sum_probs=157.6
Q ss_pred hccCcCCCeeeccCCcccc----cccccccCCCcccEEEeecceee---ec-------CcccccCCCCCCeEEeecCccc
Q 045822 44 IGRLSSLNGLSLYSNFLKC----SIPLSLGNLTSLIYIGISNNLLF---GL-------IPNEVGSLKSLSDLRLYNNTLK 109 (331)
Q Consensus 44 ~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~---~~-------~~~~~~~~~~L~~L~l~~~~~~ 109 (331)
+..+..++.+++++|.+.. .+...+.+.+.|+..++++--.. .. ...++..+|+|++++++.|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3456678888888887753 23444566677777777652211 11 1223445566777777666433
Q ss_pred CCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCC
Q 045822 110 NMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGS 189 (331)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 189 (331)
.-. . -.+...+.++..|++|.+.+|++....-..++. -|..+. .......-+.|+.+..++|++...
T Consensus 106 ~~g-~-~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 106 PKG-I-RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ccc-h-HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence 100 0 011123455666666666666654221111111 000000 112234556788888888876543
Q ss_pred ----cchhhhCCCCccEEEeecCcCCCCC----CccccccCCccEEEccCCccCc----cccccccCCCcccEEEccCCc
Q 045822 190 ----IPLALGNLIKLVVLDLSINKLSGSI----PLSFASLTSLTTLYLYENSLCD----SIQKEIGDMKSLSILDLSSNK 257 (331)
Q Consensus 190 ----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~ls~~~ 257 (331)
....|...+.|+.+.++.|.|.... ...+.++++|+.|++++|.++. .....++.+|+|+.+++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 2345667788999999998887432 3456789999999999998875 334567788999999999999
Q ss_pred cccccchhhh----hccccccEEEccccccccc----CCCCCCCCCcceEEEeccceec
Q 045822 258 LNGSIPLSLT----NLTNSLKVLSLSSNNIVGE----IPLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 258 ~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 308 (331)
+.......+. ...++|+.|.+.+|.++.. +.......|.|+.|+|++|++.
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 8877655543 3344699999999988742 3334555799999999999984
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=4.3e-14 Score=114.70 Aligned_cols=239 Identities=20% Similarity=0.198 Sum_probs=165.9
Q ss_pred ccCCCCCccEEEeccCcccCC----ChhhhccCcCCCeeeccCCccc---cc-------ccccccCCCcccEEEeeccee
Q 045822 19 EIGHLTHLKLLSFSKNQLSGL----IPHEIGRLSSLNGLSLYSNFLK---CS-------IPLSLGNLTSLIYIGISNNLL 84 (331)
Q Consensus 19 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~---~~-------~~~~~~~l~~L~~L~l~~~~~ 84 (331)
....+..++++++++|.+... ....+++.+.|+..++++-... .. +.+++..+++|+++++++|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 355677788888888887743 2333456677888888763221 12 223455688899999988877
Q ss_pred eecCcc----cccCCCCCCeEEeecCcccCCCCccCCc---------hhhhhCCcCCcEEEccccccCCcc----ccccc
Q 045822 85 FGLIPN----EVGSLKSLSDLRLYNNTLKNMNALSGSI---------PDEIRNLKSLLNLQLDNNTLNGSI----PLSLG 147 (331)
Q Consensus 85 ~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~---------~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~ 147 (331)
....+. .+..+..|++|.+.+|.+....+- .+ .....+-++|+.+..++|.+.+.. ...|.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~--~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG--RLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHH--HHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 644333 346788899999988876532210 11 122345578888888888776432 23355
Q ss_pred CCCCCcEEEeecccCCC----cccccccCCCCCCEEEccCCcCCCC----cchhhhCCCCccEEEeecCcCCCCCCccc-
Q 045822 148 NLTNLTTLYFSTNALSG----SISNEITNLRSISDLQLSENTLDGS----IPLALGNLIKLVVLDLSINKLSGSIPLSF- 218 (331)
Q Consensus 148 ~~~~L~~l~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~- 218 (331)
..+.|+.+.+..|.+.. .....+..++.|+.|++.+|.+... ....++.++.|+.+++++|.+.......+
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 66889999998887763 3456678899999999999988643 34566778899999999998886544333
Q ss_pred ----cccCCccEEEccCCccCcccc----ccccCCCcccEEEccCCccc
Q 045822 219 ----ASLTSLTTLYLYENSLCDSIQ----KEIGDMKSLSILDLSSNKLN 259 (331)
Q Consensus 219 ----~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~~~~~ 259 (331)
...|.|+++.+.+|.++.... ..+...|.|+.|++++|.+.
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 246899999999999875322 23345799999999999983
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6.8e-13 Score=110.85 Aligned_cols=210 Identities=24% Similarity=0.215 Sum_probs=118.3
Q ss_pred CCCcccEEEeecceeeecCc-ccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccc-ccc
Q 045822 70 NLTSLIYIGISNNLLFGLIP-NEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPL-SLG 147 (331)
Q Consensus 70 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~ 147 (331)
++.+|+.+.+.++.+..... .....|++++.|++++|-+..+. .+......+|+|+.|+++.|.+...... .-.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~----~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF----PVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH----HHHHHHHhcccchhcccccccccCCccccchh
Confidence 46677777777776553321 34566777888888877777654 3345566777788888777766421111 111
Q ss_pred CCCCCcEEEeecccCCC-cccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCC-CCccccccCCcc
Q 045822 148 NLTNLTTLYFSTNALSG-SISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGS-IPLSFASLTSLT 225 (331)
Q Consensus 148 ~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~ 225 (331)
.+++|+.|.+++|.++. .....+..+|+++.|.+.+|............+..|+.|++++|.+.+. .......+|.|.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 34667777777776652 2223345567777777777642112222334455677777777765522 223445667777
Q ss_pred EEEccCCccCcccccc------ccCCCcccEEEccCCccccccc-hhhhhccccccEEEccccccc
Q 045822 226 TLYLYENSLCDSIQKE------IGDMKSLSILDLSSNKLNGSIP-LSLTNLTNSLKVLSLSSNNIV 284 (331)
Q Consensus 226 ~L~l~~~~~~~~~~~~------~~~~~~L~~L~ls~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 284 (331)
.|+++.+.+.+..... ...+|+|++|++..|++.+.-. ..+... .+++.|.+..+.+.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l-~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL-ENLKHLRITLNYLN 339 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc-chhhhhhccccccc
Confidence 7777777665422211 1345677777777776642211 112222 23555555555554
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=6.7e-12 Score=118.37 Aligned_cols=107 Identities=29% Similarity=0.349 Sum_probs=55.1
Q ss_pred CCCCccEEEeccCc--ccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCC
Q 045822 22 HLTHLKLLSFSKNQ--LSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLS 99 (331)
Q Consensus 22 ~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 99 (331)
.+++|+.|-+.++. +..+...+|..+|.|+.|++++|.-...+|..++.+.+|++|+++++.+. ..|..+.++.+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 34455555555553 33344445555666666666655444455555556666666666655554 3355555555666
Q ss_pred eEEeecCcccCCCCccCCchhhhhCCcCCcEEEccc
Q 045822 100 DLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDN 135 (331)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 135 (331)
+|++..+.... .++.....+.+|++|.+..
T Consensus 622 ~Lnl~~~~~l~------~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 622 YLNLEVTGRLE------SIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eeccccccccc------cccchhhhcccccEEEeec
Confidence 66555443221 1123333355555555543
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=1.1e-11 Score=94.31 Aligned_cols=131 Identities=25% Similarity=0.328 Sum_probs=53.3
Q ss_pred cCCCCCccEEEeccCcccCCChhhhc-cCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCC
Q 045822 20 IGHLTHLKLLSFSKNQLSGLIPHEIG-RLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSL 98 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 98 (331)
+.++.++++|+|+++.+..+ +.+. .+.+|+.|++++|.+.. + +.+..+++|++|++++|.+....+.....+|+|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 45556789999999998854 2343 57789999999999873 2 467789999999999999886543323468999
Q ss_pred CeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCccc---ccccCCCCCcEEEeec
Q 045822 99 SDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIP---LSLGNLTNLTTLYFST 159 (331)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~ 159 (331)
++|++.+|.+.++... ..+..+++|+.|.+.+|+++.... ..+..+|+|+.|+-..
T Consensus 91 ~~L~L~~N~I~~l~~l-----~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNNKISDLNEL-----EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS---SCCCC-----GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CEEECcCCcCCChHHh-----HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9999999999876532 567889999999999999874321 1255678888887654
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=2.6e-11 Score=92.20 Aligned_cols=126 Identities=28% Similarity=0.331 Sum_probs=44.1
Q ss_pred cCcCCCeeeccCCccccccccccc-CCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhh-h
Q 045822 46 RLSSLNGLSLYSNFLKCSIPLSLG-NLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEI-R 123 (331)
Q Consensus 46 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~ 123 (331)
++.+++.|++.++.|+. + +.+. .+.+|+.|++++|.+... ..+..+++|+.|++++|.++.++ ..+ .
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-------~~l~~ 85 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-------EGLDK 85 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-------HHHHH
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-------cchHH
Confidence 45567888888887762 2 3444 467788888888877654 34667788888888888777542 333 3
Q ss_pred CCcCCcEEEccccccCCcc-cccccCCCCCcEEEeecccCCCcc---cccccCCCCCCEEEcc
Q 045822 124 NLKSLLNLQLDNNTLNGSI-PLSLGNLTNLTTLYFSTNALSGSI---SNEITNLRSISDLQLS 182 (331)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~---~~~l~~~~~L~~L~l~ 182 (331)
.+++|++|.+++|.+.+.. ...+..+++|+.|++.+|+++... ...+..+|+|+.|+-.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 5778888888888776432 234556778888888887776322 1235567777777543
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=7.6e-11 Score=111.33 Aligned_cols=105 Identities=28% Similarity=0.307 Sum_probs=47.4
Q ss_pred cCCCeeeccCCc--ccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCC
Q 045822 48 SSLNGLSLYSNF--LKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNL 125 (331)
Q Consensus 48 ~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 125 (331)
+.|++|-+.++. +.......|..++.|++||+++|.-....|..++.+.+|++|+++++.+. .+|..+.++
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-------~LP~~l~~L 617 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-------HLPSGLGNL 617 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-------ccchHHHHH
Confidence 345555554443 22122223444555555555544433344455555555555555555444 334455555
Q ss_pred cCCcEEEccccccCCcccccccCCCCCcEEEeec
Q 045822 126 KSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFST 159 (331)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 159 (331)
++|.+|++..+......+.....+++|+++.+..
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeec
Confidence 5555555544433222233333344555555443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.9e-11 Score=97.79 Aligned_cols=133 Identities=29% Similarity=0.257 Sum_probs=94.1
Q ss_pred cccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcc
Q 045822 169 EITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSL 248 (331)
Q Consensus 169 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 248 (331)
.+..+..|.++++++|.+.. ......-.|.++.|+++.|++.... .+..+++|..|++++|.+.. ...+-..+-++
T Consensus 279 ~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHh-hhhhHhhhcCE
Confidence 34455678888888888763 3344566788888888888877332 36677888888888887754 22333456788
Q ss_pred cEEEccCCccccccchhhhhccccccEEEccccccccc-CCCCCCCCCcceEEEeccceec
Q 045822 249 SILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGE-IPLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 249 ~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 308 (331)
+.|.+++|.+. ....+....+ |..|++++|++.+. -...++++|.|+.+.+.+|++.
T Consensus 355 KtL~La~N~iE--~LSGL~KLYS-LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 355 KTLKLAQNKIE--TLSGLRKLYS-LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeeehhhhhHh--hhhhhHhhhh-heeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 88888888774 2333444444 88889988888642 4457788899999999999886
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.1e-11 Score=103.77 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=6.3
Q ss_pred cCCccEEEccCCcc
Q 045822 221 LTSLTTLYLYENSL 234 (331)
Q Consensus 221 ~~~L~~L~l~~~~~ 234 (331)
+++|++|++..|++
T Consensus 300 f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 300 FPKLEYLNISENNI 313 (505)
T ss_pred cccceeeecccCcc
Confidence 34444444444444
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.1e-10 Score=93.34 Aligned_cols=236 Identities=19% Similarity=0.165 Sum_probs=155.0
Q ss_pred CCCCcccCCCCCccEEEeccCcccCCCh-hhh-ccCcCCCeeeccCCcccc--cccccccCCCcccEEEeecceeeecCc
Q 045822 14 GSIPPEIGHLTHLKLLSFSKNQLSGLIP-HEI-GRLSSLNGLSLYSNFLKC--SIPLSLGNLTSLIYIGISNNLLFGLIP 89 (331)
Q Consensus 14 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~ 89 (331)
+..+-.++....++.+.+-++.+..+.. ..| ..+.+++.+++.+|.+++ .+...+.++|+|++|+++.|++...+.
T Consensus 35 g~s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~ 114 (418)
T KOG2982|consen 35 GLSYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK 114 (418)
T ss_pred ccceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc
Confidence 3344445555667788888887765422 223 467899999999999984 355667899999999999998764432
Q ss_pred ccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcc--ccccc-CCCCCcEEEeecccCCC--
Q 045822 90 NEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSI--PLSLG-NLTNLTTLYFSTNALSG-- 164 (331)
Q Consensus 90 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~-~~~~L~~l~l~~~~~~~-- 164 (331)
..-....+|+++-+.|+.+.-. .....+..+|++++|+++.|.+.... ..... .-+.++++...+|....
T Consensus 115 ~lp~p~~nl~~lVLNgT~L~w~-----~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~ 189 (418)
T KOG2982|consen 115 SLPLPLKNLRVLVLNGTGLSWT-----QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL 189 (418)
T ss_pred cCcccccceEEEEEcCCCCChh-----hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH
Confidence 2114667999999999865421 33467888999999999998543211 11111 22456667766664321
Q ss_pred cccccccCCCCCCEEEccCCcCCCCc-chhhhCCCCccEEEeecCcCCCC-CCccccccCCccEEEccCCccCcccc---
Q 045822 165 SISNEITNLRSISDLQLSENTLDGSI-PLALGNLIKLVVLDLSINKLSGS-IPLSFASLTSLTTLYLYENSLCDSIQ--- 239 (331)
Q Consensus 165 ~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~--- 239 (331)
.......-+|++..+.+..+.+.... ...+..+|.+..|+++.+++.+. ....+.++++|..|.+.++.+.+...
T Consensus 190 ~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~e 269 (418)
T KOG2982|consen 190 NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGE 269 (418)
T ss_pred HHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCc
Confidence 11112234577888888888765322 23345667778888888888754 33567788999999999988765322
Q ss_pred ---ccccCCCcccEEEcc
Q 045822 240 ---KEIGDMKSLSILDLS 254 (331)
Q Consensus 240 ---~~~~~~~~L~~L~ls 254 (331)
-.+..+++++.|+=+
T Consensus 270 rr~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 270 RRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ceEEEEeeccceEEecCc
Confidence 223467777777644
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.2e-10 Score=93.31 Aligned_cols=224 Identities=24% Similarity=0.252 Sum_probs=132.8
Q ss_pred cCcCCCeeeccCCcc--------cccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCC
Q 045822 46 RLSSLNGLSLYSNFL--------KCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGS 117 (331)
Q Consensus 46 ~l~~L~~L~l~~~~~--------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 117 (331)
.+..|++|.+++..- ...++-.+.-+++|+.+.++.|.-..+. +....-|.|+++.+.+..+.+.+. -
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~~~~---l 255 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQDVPS---L 255 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeeccccccccc---c
Confidence 355677777765421 1112222334567777777776643221 222234677777777665554321 1
Q ss_pred chhhhhCCcCCcEEEcc-ccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhC
Q 045822 118 IPDEIRNLKSLLNLQLD-NNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGN 196 (331)
Q Consensus 118 ~~~~l~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 196 (331)
+|. ..+.-.... +....+.....+...+.|+.+++++|.++ ...+.+.-.|+++.|+++.|.+... ..++.
T Consensus 256 ~pe-----~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~ 327 (490)
T KOG1259|consen 256 LPE-----TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAE 327 (490)
T ss_pred cch-----hhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhh
Confidence 111 111111000 01111111222334567888888888776 3455566678888888888887633 33777
Q ss_pred CCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccch-hhhhccccccE
Q 045822 197 LIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPL-SLTNLTNSLKV 275 (331)
Q Consensus 197 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~-~~~~~~~~L~~ 275 (331)
+++|++|++++|.+. ....+-..+.+.+.|.+.+|.+.+ ...+..+-+|..||+++|+|..-... .+...+ .|+.
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~ 403 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLET 403 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhccccccc-HHHH
Confidence 888888888888877 444555677888888888887743 34456677888888888887633222 334444 4888
Q ss_pred EEcccccccc
Q 045822 276 LSLSSNNIVG 285 (331)
Q Consensus 276 L~l~~~~~~~ 285 (331)
+.+.+|++.+
T Consensus 404 l~L~~NPl~~ 413 (490)
T KOG1259|consen 404 LRLTGNPLAG 413 (490)
T ss_pred HhhcCCCccc
Confidence 8888888863
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=8.7e-10 Score=97.12 Aligned_cols=197 Identities=34% Similarity=0.500 Sum_probs=128.8
Q ss_pred EEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCC-cccEEEeecceeeecCcccccCCCCCCeEEeecC
Q 045822 28 LLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLT-SLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNN 106 (331)
Q Consensus 28 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 106 (331)
.+.+..+.+.. ....+..++.++.+++.++.+. .++....... +|+.++++++.+... +..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 45666665531 1233444567888888887776 4555555553 788888888877643 345677888888888888
Q ss_pred cccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcC
Q 045822 107 TLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTL 186 (331)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 186 (331)
.+..+ +......++|+.+.++++.+. .++........|+.+.+++|... .....+....++..+.+.++.+
T Consensus 174 ~l~~l-------~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 174 DLSDL-------PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred hhhhh-------hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee
Confidence 77743 344446777888888888877 34443334455778888777432 3445566667777777777665
Q ss_pred CCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcccc
Q 045822 187 DGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQ 239 (331)
Q Consensus 187 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 239 (331)
.. .+..+..++.++.|++++|.+..... +....+++.++++++.+.....
T Consensus 245 ~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 245 ED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 42 24556677778888888888774333 6677788888888887765443
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=1.3e-09 Score=95.98 Aligned_cols=195 Identities=37% Similarity=0.517 Sum_probs=142.5
Q ss_pred eeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCC-CCCeEEeecCcccCCCCccCCchhhhhCCcCCcE
Q 045822 52 GLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLK-SLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLN 130 (331)
Q Consensus 52 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 130 (331)
.+....+.+. .....+.....++.+++.++.+... +....... +|+.++++++.+.. ++..+..+++|+.
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~-------l~~~~~~l~~L~~ 167 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIES-------LPSPLRNLPNLKN 167 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhh-------hhhhhhccccccc
Confidence 4677777663 2233444557899999998888755 34455553 89999999998884 3356888999999
Q ss_pred EEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcC
Q 045822 131 LQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKL 210 (331)
Q Consensus 131 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 210 (331)
|.++.|++.+ .+......+.|+.++++++.+.. .+........|+++.+++|... .....+..+.++..+.+.++++
T Consensus 168 L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 168 LDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred cccCCchhhh-hhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee
Confidence 9999999884 44444467889999999998873 4444445556889999988533 3445566777888888888877
Q ss_pred CCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccc
Q 045822 211 SGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGS 261 (331)
Q Consensus 211 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~ 261 (331)
. ..+..+..+++++.|++++|.+..... +....+++.++++++.+...
T Consensus 245 ~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 245 E-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred e-eccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 6 335677788889999999999876544 67789999999999887644
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=6.3e-10 Score=69.73 Aligned_cols=58 Identities=31% Similarity=0.417 Sum_probs=29.1
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCc
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNF 59 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 59 (331)
|++|++++|+++...++.|..+++|++|++++|.+..+.+.+|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555555554444445555555555555555544444445555555555555443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=1.5e-09 Score=68.04 Aligned_cols=60 Identities=33% Similarity=0.495 Sum_probs=37.2
Q ss_pred CCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecce
Q 045822 24 THLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNL 83 (331)
Q Consensus 24 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 83 (331)
|+|++|++++|++..+.+.+|.++++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456666666666665555666666666666666666654445556666666666666554
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=5.5e-11 Score=102.90 Aligned_cols=134 Identities=34% Similarity=0.455 Sum_probs=58.6
Q ss_pred cccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCC
Q 045822 167 SNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMK 246 (331)
Q Consensus 167 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 246 (331)
+..+.++..|.+++++.|.+. ..+..+..++ |+.|.+++|+++ .+|..++..+.|..++.+.|.+.. .+..+..+.
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~ 189 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLT 189 (722)
T ss_pred chhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHH
Confidence 333444444444444444433 2222222222 444444444444 333344444444444554444432 222334444
Q ss_pred cccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceec
Q 045822 247 SLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 247 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 308 (331)
+|+.|+++.|.+. ..+..+.. .+ |..||++.|++. .+|..|++|..|++|-|.+|++.
T Consensus 190 slr~l~vrRn~l~-~lp~El~~-Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 190 SLRDLNVRRNHLE-DLPEELCS-LP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHHhhhhhh-hCCHHHhC-Cc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 4555555554444 34444432 22 455555555554 44545555555555555555554
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=3.5e-10 Score=90.51 Aligned_cols=229 Identities=18% Similarity=0.173 Sum_probs=150.8
Q ss_pred CCCcccEEEeecceeeecCc-ccc-cCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCccccccc
Q 045822 70 NLTSLIYIGISNNLLFGLIP-NEV-GSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLG 147 (331)
Q Consensus 70 ~l~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 147 (331)
....++.+.+.++.+..... ..| ..+..++.+++.+|.+.+|+ .+...+.++|.|+.|+++.|.+...+...=.
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWs----eI~~ile~lP~l~~LNls~N~L~s~I~~lp~ 118 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWS----EIGAILEQLPALTTLNLSCNSLSSDIKSLPL 118 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHH----HHHHHHhcCccceEeeccCCcCCCccccCcc
Confidence 33456677777777654321 112 35778999999999999886 4557789999999999999988743322113
Q ss_pred CCCCCcEEEeecccCCC-cccccccCCCCCCEEEccCCcCCCCc--chhh-hCCCCccEEEeecCcCCC--CCCcccccc
Q 045822 148 NLTNLTTLYFSTNALSG-SISNEITNLRSISDLQLSENTLDGSI--PLAL-GNLIKLVVLDLSINKLSG--SIPLSFASL 221 (331)
Q Consensus 148 ~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~~ 221 (331)
...+|+.+.+.|..+.= .....+..+|.+++++++.|+..+.. .... ..-+.+.++...+|.... .....-..+
T Consensus 119 p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 56789999998876652 23344567888999999998543211 1111 112356666666664331 111222356
Q ss_pred CCccEEEccCCccCccc-cccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCC------CCCCC
Q 045822 222 TSLTTLYLYENSLCDSI-QKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPL------GHGKF 294 (331)
Q Consensus 222 ~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~ 294 (331)
|++..+-+..|.+.+.. ...+..+|.+..|+++.+++......+....+++|..|.++++++.+.+.. .++.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 89999999988776533 244556677779999999988665555555566799999999998864432 24667
Q ss_pred CcceEEEe
Q 045822 295 SSLIQLIL 302 (331)
Q Consensus 295 ~~L~~L~l 302 (331)
++++.|+=
T Consensus 279 ~~v~vLNG 286 (418)
T KOG2982|consen 279 TKVQVLNG 286 (418)
T ss_pred cceEEecC
Confidence 88888763
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.83 E-value=7.8e-09 Score=95.61 Aligned_cols=107 Identities=31% Similarity=0.515 Sum_probs=86.9
Q ss_pred CccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEee
Q 045822 25 HLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLY 104 (331)
Q Consensus 25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (331)
.++.|+|+++.+....+..+..+++|+.|++++|.+...+|..+..+++|+.|++++|.+....|..+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47888898888887888888889999999999998887788888889999999999998887788888899999999999
Q ss_pred cCcccCCCCccCCchhhhhCC-cCCcEEEccccc
Q 045822 105 NNTLKNMNALSGSIPDEIRNL-KSLLNLQLDNNT 137 (331)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~ 137 (331)
+|.+.. .+|..+... .++..+.+.+|.
T Consensus 499 ~N~l~g------~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSG------RVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccc------cCChHHhhccccCceEEecCCc
Confidence 886552 566666543 456677777764
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=1.3e-10 Score=100.65 Aligned_cols=190 Identities=30% Similarity=0.473 Sum_probs=104.5
Q ss_pred cEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecC
Q 045822 27 KLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNN 106 (331)
Q Consensus 27 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 106 (331)
...+++.|++. +.|..+..|..|..+.+..|.+. .+|..+.++..|.+++++.|++.. .|..+.. --|+.+-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~-lpLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCD-LPLKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhc-CcceeEEEecC
Confidence 34455555555 44555555556666666666655 556666666666666666666542 2333332 24666666666
Q ss_pred cccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcC
Q 045822 107 TLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTL 186 (331)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 186 (331)
+++ .+|..++..++|..|+.+.|++. ..+..++.+..|+.+.+..|.+. .++..+..+ .|..|+++.|.+
T Consensus 154 kl~-------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 154 KLT-------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred ccc-------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence 665 33455555566666666666665 44445555566666666655554 233334433 356666666665
Q ss_pred CCCcchhhhCCCCccEEEeecCcCCCCCCcccc---ccCCccEEEccCC
Q 045822 187 DGSIPLALGNLIKLVVLDLSINKLSGSIPLSFA---SLTSLTTLYLYEN 232 (331)
Q Consensus 187 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~ 232 (331)
. ..+..|..|..|++|.|.+|.+.+ .|..+. ...-.|+|++..|
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 4 455566666666666666666552 222221 2223445555555
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=8e-11 Score=94.12 Aligned_cols=87 Identities=18% Similarity=0.105 Sum_probs=44.1
Q ss_pred CCCeeeccCCcccc-cccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcC
Q 045822 49 SLNGLSLYSNFLKC-SIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKS 127 (331)
Q Consensus 49 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 127 (331)
.|+++++++..++. .+...+..|.+|+.|.+.+..+.+.....+++..+|+.++++.+.--... .+.-.+.+|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n----~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN----ALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh----HHHHHHHhhhh
Confidence 35666666655542 22333445666666666666555544444555566666666554311100 11223555666
Q ss_pred CcEEEccccccC
Q 045822 128 LLNLQLDNNTLN 139 (331)
Q Consensus 128 L~~L~l~~~~~~ 139 (331)
|++|++++|...
T Consensus 262 L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 262 LDELNLSWCFLF 273 (419)
T ss_pred HhhcCchHhhcc
Confidence 666666665543
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=1.7e-08 Score=93.35 Aligned_cols=108 Identities=35% Similarity=0.498 Sum_probs=75.4
Q ss_pred ccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcc
Q 045822 200 LVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLS 279 (331)
Q Consensus 200 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~ 279 (331)
++.|+++++.+....|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++..+..+.. |+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~-L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS-LRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC-CCEEECc
Confidence 666777777777667777777777777777777776666666777777777777777777777766665554 7777777
Q ss_pred cccccccCCCCCCCC-CcceEEEeccceec
Q 045822 280 SNNIVGEIPLGHGKF-SSLIQLILTNNELS 308 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 308 (331)
+|++.+.+|..+... ..+..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 777777777666542 35566777776543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.9e-10 Score=90.96 Aligned_cols=178 Identities=24% Similarity=0.183 Sum_probs=108.9
Q ss_pred CCcEEEccccccCC-cccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCc-CCCC-cchhhhCCCCccEE
Q 045822 127 SLLNLQLDNNTLNG-SIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENT-LDGS-IPLALGNLIKLVVL 203 (331)
Q Consensus 127 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L 203 (331)
.+|.++++...++. ..-..+.++.+|+.+.+.|..+.+.....+++...|+.+++++++ ++.. ....+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777777766652 222335567778888888877777777777777788888887764 2221 23345677778888
Q ss_pred EeecCcCCCCCCc-ccc-ccCCccEEEccCCcc--Cccc-cccccCCCcccEEEccCCcc-ccccchhhhhccccccEEE
Q 045822 204 DLSINKLSGSIPL-SFA-SLTSLTTLYLYENSL--CDSI-QKEIGDMKSLSILDLSSNKL-NGSIPLSLTNLTNSLKVLS 277 (331)
Q Consensus 204 ~l~~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~--~~~~-~~~~~~~~~L~~L~ls~~~~-~~~~~~~~~~~~~~L~~L~ 277 (331)
+++.|.+...... .+. --++|+.|+++|+.- .... ..-...||+|..||+|.|.. ++.....+.... -|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~-~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN-YLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc-hheeee
Confidence 8887776533211 111 126777788877642 1111 11123678888888887763 332333333433 488888
Q ss_pred cccccc-cccCCCCCCCCCcceEEEeccc
Q 045822 278 LSSNNI-VGEIPLGHGKFSSLIQLILTNN 305 (331)
Q Consensus 278 l~~~~~-~~~~~~~~~~~~~L~~L~l~~~ 305 (331)
++.|.. .....-.+...|+|..|++.||
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 888843 3334445677788888888777
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=1e-09 Score=96.96 Aligned_cols=242 Identities=29% Similarity=0.360 Sum_probs=110.5
Q ss_pred CcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCc
Q 045822 47 LSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLK 126 (331)
Q Consensus 47 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 126 (331)
+..++.+.++.+.+. .....+..+.+|+.+++.++.+..+. ..+..+++|+++++++|.++.+. .+..++
T Consensus 71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--------~l~~l~ 140 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--------GLSTLT 140 (414)
T ss_pred hHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--------chhhcc
Confidence 444555555555554 22233445556666666666555432 11445566666666666665432 244444
Q ss_pred CCcEEEccccccCCcccccccCCCCCcEEEeecccCCCccc-ccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEe
Q 045822 127 SLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSIS-NEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDL 205 (331)
Q Consensus 127 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 205 (331)
.|+.|++.+|.+... ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+.... .+..+..+..+++
T Consensus 141 ~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 141 LLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSL 215 (414)
T ss_pred chhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhc
Confidence 466666666655421 122335556666666665543222 1 344555666666666554221 1122223333344
Q ss_pred ecCcCCCCCCccccccC--CccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccc
Q 045822 206 SINKLSGSIPLSFASLT--SLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNI 283 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 283 (331)
..+.+....+ +..++ .|+.+.++++.+.... ..+..++.+..++++.+.+...- .+.... .+..+....+++
T Consensus 216 ~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~-~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 216 LDNKISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE--GLERLP-KLSELWLNDNKL 289 (414)
T ss_pred ccccceeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccccc--cccccc-hHHHhccCcchh
Confidence 4544442211 11112 2556666666554321 33445556666666655544211 111111 134444444443
Q ss_pred ccc--CCC--CCCCCCcceEEEeccceecc
Q 045822 284 VGE--IPL--GHGKFSSLIQLILTNNELSR 309 (331)
Q Consensus 284 ~~~--~~~--~~~~~~~L~~L~l~~~~~~~ 309 (331)
... ... .....+.+..+.+.++++.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cchhhhhccccccccccccccccccCcccc
Confidence 311 111 13444556666666665543
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=2.3e-09 Score=94.70 Aligned_cols=246 Identities=28% Similarity=0.337 Sum_probs=166.7
Q ss_pred CCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeE
Q 045822 22 HLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDL 101 (331)
Q Consensus 22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 101 (331)
.+..++.+.++.+.+.. ....+..+.+|..+++.+|.+. .+...+..+++|++|+++++.+... ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 45666677777777664 2234667889999999999987 3333377899999999999998865 346677889999
Q ss_pred EeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCccc-ccccCCCCCcEEEeecccCCCcccccccCCCCCCEEE
Q 045822 102 RLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIP-LSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQ 180 (331)
Q Consensus 102 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 180 (331)
++.+|.++.+++ +..++.|+.++++++.+..... . ...+.+++.+.+.++.+... ..+.....+..+.
T Consensus 146 ~l~~N~i~~~~~--------~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 146 NLSGNLISDISG--------LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLS 214 (414)
T ss_pred eeccCcchhccC--------CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhh
Confidence 999999987643 4447889999999998874444 2 35678888999988877632 2333344445557
Q ss_pred ccCCcCCCCcchhhhCCC--CccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCcc
Q 045822 181 LSENTLDGSIPLALGNLI--KLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKL 258 (331)
Q Consensus 181 l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~ 258 (331)
+..+.+..... +..+. .|+.+.++++++.. .+..+..++.+..+++.++.+.. ...+...+.+..+....+.+
T Consensus 215 l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 215 LLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKL 289 (414)
T ss_pred cccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc--cccccccchHHHhccCcchh
Confidence 77776653322 12222 38889999998873 32456677889999998888754 23344567777777777775
Q ss_pred cccc---chhhhhccccccEEEcccccccccC
Q 045822 259 NGSI---PLSLTNLTNSLKVLSLSSNNIVGEI 287 (331)
Q Consensus 259 ~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~ 287 (331)
.... ..........+..+.+.++++....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cchhhhhccccccccccccccccccCcccccc
Confidence 5221 1111222234778888888776433
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.62 E-value=6e-09 Score=82.53 Aligned_cols=239 Identities=20% Similarity=0.141 Sum_probs=157.3
Q ss_pred cCCCCCccEEEeccCcccCCChhhhc----cCcCCCeeeccCCccc---c-------cccccccCCCcccEEEeecceee
Q 045822 20 IGHLTHLKLLSFSKNQLSGLIPHEIG----RLSSLNGLSLYSNFLK---C-------SIPLSLGNLTSLIYIGISNNLLF 85 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~---~-------~~~~~~~~l~~L~~L~l~~~~~~ 85 (331)
+..+..+..+++|+|.|...-..+++ +-.+|+..++++-... + .+.+++.+||+|+.+++++|-+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34577888889999888755444443 4456777777763321 1 13345668899999999988776
Q ss_pred ecCc----ccccCCCCCCeEEeecCcccCCCCccCCchh---------hhhCCcCCcEEEccccccCCcccc----cccC
Q 045822 86 GLIP----NEVGSLKSLSDLRLYNNTLKNMNALSGSIPD---------EIRNLKSLLNLQLDNNTLNGSIPL----SLGN 148 (331)
Q Consensus 86 ~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---------~l~~~~~L~~L~l~~~~~~~~~~~----~~~~ 148 (331)
...| +.+++-..|.+|.+++|.+..+.+ +.+.. ..++-|.|+.+..+.|.+..-... .+..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG--~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAG--GRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccch--hHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 4443 335677889999999887654322 12221 234457899999888877532211 1222
Q ss_pred CCCCcEEEeecccCCCc-----ccccccCCCCCCEEEccCCcCCCCc----chhhhCCCCccEEEeecCcCCCCCCccc-
Q 045822 149 LTNLTTLYFSTNALSGS-----ISNEITNLRSISDLQLSENTLDGSI----PLALGNLIKLVVLDLSINKLSGSIPLSF- 218 (331)
Q Consensus 149 ~~~L~~l~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~- 218 (331)
-.+|+.+.+.+|.+... ....+..+.+|+.|++.+|.++... ...++.++.|+.|.+.+|-++......+
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~ 263 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL 263 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH
Confidence 25789999999887743 2233456789999999999886433 3445667788999999987774433222
Q ss_pred ---c--ccCCccEEEccCCccCcccccc-----c--cCCCcccEEEccCCcccc
Q 045822 219 ---A--SLTSLTTLYLYENSLCDSIQKE-----I--GDMKSLSILDLSSNKLNG 260 (331)
Q Consensus 219 ---~--~~~~L~~L~l~~~~~~~~~~~~-----~--~~~~~L~~L~ls~~~~~~ 260 (331)
. ..|+|..|....|.+....... + ..+|-|..+.+.+|.+..
T Consensus 264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 1 4588999999888764422111 1 367899999999998873
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.59 E-value=2.3e-08 Score=79.34 Aligned_cols=138 Identities=17% Similarity=0.090 Sum_probs=94.3
Q ss_pred CCCCCCEEEccCCcCCCCcc----hhhhCCCCccEEEeecCcCCCCCCc-----cccccCCccEEEccCCccCc----cc
Q 045822 172 NLRSISDLQLSENTLDGSIP----LALGNLIKLVVLDLSINKLSGSIPL-----SFASLTSLTTLYLYENSLCD----SI 238 (331)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~----~~ 238 (331)
.-|.|+.+..+.|++..... ..+.....|..+.+..|.|...... .+..+.+|+.|++++|.++- ..
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 45778888888887653222 2233446788899998888754222 22356899999999998764 33
Q ss_pred cccccCCCcccEEEccCCccccccchhhhhcc-----ccccEEEccccccccc-CCC----CC--CCCCcceEEEeccce
Q 045822 239 QKEIGDMKSLSILDLSSNKLNGSIPLSLTNLT-----NSLKVLSLSSNNIVGE-IPL----GH--GKFSSLIQLILTNNE 306 (331)
Q Consensus 239 ~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~-~~~----~~--~~~~~L~~L~l~~~~ 306 (331)
..++..++.|+.|.+..|-++......+...+ ++|..|...+|.+.+. +.. .+ ..+|-|..|.+.||+
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 45667788899999999988877766665433 3577777788865432 222 11 457888888899998
Q ss_pred ecc
Q 045822 307 LSR 309 (331)
Q Consensus 307 ~~~ 309 (331)
+.+
T Consensus 315 ~~E 317 (388)
T COG5238 315 IKE 317 (388)
T ss_pred chh
Confidence 874
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=1.6e-09 Score=90.65 Aligned_cols=277 Identities=19% Similarity=0.086 Sum_probs=161.1
Q ss_pred CccEEEeccCcccCC--ChhhhccCcCCCeeeccCCcc-cccccccc-cCCCcccEEEeecce-eeecCcc-cccCCCCC
Q 045822 25 HLKLLSFSKNQLSGL--IPHEIGRLSSLNGLSLYSNFL-KCSIPLSL-GNLTSLIYIGISNNL-LFGLIPN-EVGSLKSL 98 (331)
Q Consensus 25 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~~L 98 (331)
.|+.|.++++.-... .-.+..++|++++|.+.+|.. ++.....+ .+|+++++|++-.|. +++..-. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 577888887743222 223345788888888877652 22222222 357888888887743 4433333 23468888
Q ss_pred CeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccc----cCCCCCcEEEeecc-cCCCcc-cccccC
Q 045822 99 SDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSL----GNLTNLTTLYFSTN-ALSGSI-SNEITN 172 (331)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~l~l~~~-~~~~~~-~~~l~~ 172 (331)
++++++++.--.-. .+......+..++.+...+|.= .....+ ..+.-+..+++..| .++++. ...-..
T Consensus 219 ~~lNlSwc~qi~~~----gv~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 219 KYLNLSWCPQISGN----GVQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HHhhhccCchhhcC----cchHHhccchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 88888877533211 2223455566666666665421 111111 12333455555454 333322 122234
Q ss_pred CCCCCEEEccCCcC-CCCcchhh-hCCCCccEEEeecCcC-CCCCCccc-cccCCccEEEccCCccCcc--ccccccCCC
Q 045822 173 LRSISDLQLSENTL-DGSIPLAL-GNLIKLVVLDLSINKL-SGSIPLSF-ASLTSLTTLYLYENSLCDS--IQKEIGDMK 246 (331)
Q Consensus 173 ~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~ 246 (331)
+..|+.+..+++.. .+.....+ .+.++|+.+-+++|+- ++.....+ .+++.|+.+++.++..... ....-..|+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 66788888887653 22222222 4567888898888863 33333333 3668899999988875432 223335789
Q ss_pred cccEEEccCCc-cccccchhhhh---ccccccEEEccccccc-ccCCCCCCCCCcceEEEecccee
Q 045822 247 SLSILDLSSNK-LNGSIPLSLTN---LTNSLKVLSLSSNNIV-GEIPLGHGKFSSLIQLILTNNEL 307 (331)
Q Consensus 247 ~L~~L~ls~~~-~~~~~~~~~~~---~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~ 307 (331)
.|+.+.++.|. +++.....+.. ....++.+.+++|+.+ +...+.+..|++|+.+++.+|+-
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 99999999886 44332222211 1224888999999765 44566778889999999999844
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.36 E-value=9.7e-09 Score=86.04 Aligned_cols=298 Identities=16% Similarity=0.055 Sum_probs=164.6
Q ss_pred ccEEecccccc-cCC-CCcccCCCCCccEEEeccCc-ccCCCh-hhhccCcCCCeeeccCCc-ccccccc-cccCCCccc
Q 045822 2 LKFLGLSFNQF-YGS-IPPEIGHLTHLKLLSFSKNQ-LSGLIP-HEIGRLSSLNGLSLYSNF-LKCSIPL-SLGNLTSLI 75 (331)
Q Consensus 2 L~~L~l~~~~~-~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~l~~L~ 75 (331)
||.|.+.|+.- ... +-..-.+||++++|.+.+|. +++... ..-+.|++|+++++..|. +++...+ .-..|++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 67788888743 222 22334588888888888875 332222 222468888888888853 4433333 234688888
Q ss_pred EEEeeccee-eecC-cccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEcccccc-CCccc-ccccCCCC
Q 045822 76 YIGISNNLL-FGLI-PNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTL-NGSIP-LSLGNLTN 151 (331)
Q Consensus 76 ~L~l~~~~~-~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~-~~~~~~~~ 151 (331)
+++++.|+- .+.. .....++..++.+...|+.-.... .+...=+.++.+..+++..|.. ++... ..-..+..
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le----~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE----ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH----HHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 888888763 2211 122345566666666654322110 1111123334455555555532 22111 11123566
Q ss_pred CcEEEeecc-cCCCcccccc-cCCCCCCEEEccCCcC-CCCcchhh-hCCCCccEEEeecCcCCCC--CCccccccCCcc
Q 045822 152 LTTLYFSTN-ALSGSISNEI-TNLRSISDLQLSENTL-DGSIPLAL-GNLIKLVVLDLSINKLSGS--IPLSFASLTSLT 225 (331)
Q Consensus 152 L~~l~l~~~-~~~~~~~~~l-~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~ 225 (331)
|+.+..+++ .+++.....+ .++++|+.+.+.++.- .+.....+ .+++.|+.+++.++..... ....-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 788887765 3333333333 3567888888888752 22222222 4567788888887764422 222334778888
Q ss_pred EEEccCCccCc-ccc----ccccCCCcccEEEccCCcccc-ccchhhhhccccccEEEcccccc-ccc-CCCCCCCCCcc
Q 045822 226 TLYLYENSLCD-SIQ----KEIGDMKSLSILDLSSNKLNG-SIPLSLTNLTNSLKVLSLSSNNI-VGE-IPLGHGKFSSL 297 (331)
Q Consensus 226 ~L~l~~~~~~~-~~~----~~~~~~~~L~~L~ls~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~-~~~-~~~~~~~~~~L 297 (331)
.+++++|.... ... ..-..+..|+.+.+++++... ...+....+. +|+.+++.+|+. +.+ +...-.++|++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~-~Leri~l~~~q~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR-NLERIELIDCQDVTKEAISRFATHLPNI 454 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc-ccceeeeechhhhhhhhhHHHHhhCccc
Confidence 88888876433 211 222356788888888887543 3333344443 588888888853 333 22333567777
Q ss_pred eEEEecc
Q 045822 298 IQLILTN 304 (331)
Q Consensus 298 ~~L~l~~ 304 (331)
++.-+..
T Consensus 455 ~v~a~~a 461 (483)
T KOG4341|consen 455 KVHAYFA 461 (483)
T ss_pred eehhhcc
Confidence 7765443
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=8.7e-09 Score=92.14 Aligned_cols=128 Identities=34% Similarity=0.344 Sum_probs=85.6
Q ss_pred CCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCcc-ccccCCccEEE
Q 045822 150 TNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLS-FASLTSLTTLY 228 (331)
Q Consensus 150 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~ 228 (331)
..|...++++|.+. .+...+.-++.++.|+++.|.+.+.. .+..++.|.+|+++.|.+. ..|.. ..++ .|..|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 35677777777665 45556666777888888888876443 6778888888888888877 33322 2233 388888
Q ss_pred ccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEccccccc
Q 045822 229 LYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIV 284 (331)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 284 (331)
+++|.++. ...+..+.+|+.||+++|-+.+-..-.......+|+.|.+.||++-
T Consensus 239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88887754 2335677888888888887764332222222234888888888774
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.18 E-value=5.6e-07 Score=83.45 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=54.8
Q ss_pred CcCCCeeeccCCcccc-cccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCC
Q 045822 47 LSSLNGLSLYSNFLKC-SIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNL 125 (331)
Q Consensus 47 l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 125 (331)
+|.|++|.+.+-.+.. .+.....++|+|..||++++++... ..+..+++|+.|.+.+-.++..+. -..+.++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~-----l~~LF~L 219 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQD-----LIDLFNL 219 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhh-----HHHHhcc
Confidence 4555555555433321 1222333445555555555554433 334445555555554444333211 1234445
Q ss_pred cCCcEEEccccccCCcc------cccccCCCCCcEEEeecccCCCccccc-ccCCCCCCEEEc
Q 045822 126 KSLLNLQLDNNTLNGSI------PLSLGNLTNLTTLYFSTNALSGSISNE-ITNLRSISDLQL 181 (331)
Q Consensus 126 ~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~-l~~~~~L~~L~l 181 (331)
++|+.|+++........ ...-..+|+|+.|+.+++.+.....+. +...|+|+.+..
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 55555555443222110 011112566666666666555333222 233444544443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=1.3e-07 Score=67.28 Aligned_cols=106 Identities=21% Similarity=0.207 Sum_probs=80.2
Q ss_pred EEeccccccc--CCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 4 FLGLSFNQFY--GSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 4 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
.++|+.|++. ......+.+...|...++++|.+.++.+.+-..+|.++.+++.+|.++ .+|..+..++.|+.|+++.
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccccc
Confidence 4677777665 112233556667778899999888777777778888999999999888 6777788899999999998
Q ss_pred ceeeecCcccccCCCCCCeEEeecCcccCC
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNTLKNM 111 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 111 (331)
|++. ..|..+..+.++.+|+..++....+
T Consensus 110 N~l~-~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 110 NPLN-AEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred Cccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence 8876 4566777788888888888776643
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=6.3e-07 Score=83.15 Aligned_cols=151 Identities=21% Similarity=0.163 Sum_probs=104.3
Q ss_pred cCCCeeeccCCccc-ccccccc-cCCCcccEEEeecceeeec-CcccccCCCCCCeEEeecCcccCCCCccCCchhhhhC
Q 045822 48 SSLNGLSLYSNFLK-CSIPLSL-GNLTSLIYIGISNNLLFGL-IPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRN 124 (331)
Q Consensus 48 ~~L~~L~l~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 124 (331)
.+|++|++++...- ..-+..+ ..+|.|+.|.+++-.+... ....+.++|+|..||++++.++++ .+++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--------~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--------SGISR 193 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--------HHHhc
Confidence 58999999986542 1122223 3599999999999776433 234467899999999999998854 67899
Q ss_pred CcCCcEEEccccccCC-cccccccCCCCCcEEEeecccCCCcc------cccccCCCCCCEEEccCCcCCCCcch-hhhC
Q 045822 125 LKSLLNLQLDNNTLNG-SIPLSLGNLTNLTTLYFSTNALSGSI------SNEITNLRSISDLQLSENTLDGSIPL-ALGN 196 (331)
Q Consensus 125 ~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~------~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~ 196 (331)
+++|+.|.+.+-++.. .....+..+++|+.|+++........ .+.-..+|+|+.|+.++..+.+.... .+..
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 9999999999887764 22234557899999999986544221 12223578999999998877643322 2344
Q ss_pred CCCccEEEee
Q 045822 197 LIKLVVLDLS 206 (331)
Q Consensus 197 ~~~L~~L~l~ 206 (331)
.|+|+.+..-
T Consensus 274 H~~L~~i~~~ 283 (699)
T KOG3665|consen 274 HPNLQQIAAL 283 (699)
T ss_pred CccHhhhhhh
Confidence 5556555443
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=6.3e-06 Score=62.84 Aligned_cols=107 Identities=25% Similarity=0.263 Sum_probs=79.1
Q ss_pred CCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCC
Q 045822 49 SLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSL 128 (331)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L 128 (331)
....+++++|.+. ....|+.++.|.+|.+.+|.++.+.|.--..+++|+.|.+.+|.+..++.. .-++.||+|
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-----~pLa~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-----DPLASCPKL 115 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-----chhccCCcc
Confidence 4567888888775 345677788888889988888877776556778899999998888765432 347888899
Q ss_pred cEEEccccccCCccc---ccccCCCCCcEEEeecccC
Q 045822 129 LNLQLDNNTLNGSIP---LSLGNLTNLTTLYFSTNAL 162 (331)
Q Consensus 129 ~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~ 162 (331)
++|.+-+|++.+... ..+..+|+|+.+++.+...
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 999988888764321 2356778999999887543
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.06 E-value=1.6e-07 Score=66.88 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=74.0
Q ss_pred CcEEEeecccCCC--cccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEc
Q 045822 152 LTTLYFSTNALSG--SISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYL 229 (331)
Q Consensus 152 L~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 229 (331)
+..++++.|++.. .....+.....|..+++++|.+.++.+.....++..+.+++++|.+. ..|..+..++.|+.+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 3344555554431 12333445556777788888887655555566678888888888887 56666888888888888
Q ss_pred cCCccCccccccccCCCcccEEEccCCccccccchhh
Q 045822 230 YENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSL 266 (331)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~ 266 (331)
+.|++...+...+. +.++..|+.-+|.+. +++.++
T Consensus 108 ~~N~l~~~p~vi~~-L~~l~~Lds~~na~~-eid~dl 142 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAP-LIKLDMLDSPENARA-EIDVDL 142 (177)
T ss_pred ccCccccchHHHHH-HHhHHHhcCCCCccc-cCcHHH
Confidence 88887655444444 777778887777776 555553
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.05 E-value=1.5e-05 Score=58.28 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=57.2
Q ss_pred CcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCC
Q 045822 17 PPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLK 96 (331)
Q Consensus 17 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 96 (331)
...|.++++|+.+.+.. .+..+...+|.+++.|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 45577777888888764 455566677777777888887764 4434445677777777777754 33334445566677
Q ss_pred CCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCC
Q 045822 97 SLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNL 152 (331)
Q Consensus 97 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 152 (331)
+++.+.+..+ +..++ ...+..+ +++.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~------~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIG------SSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEH------TTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEc------hhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7777777543 33221 1335555 666666554 3333334445555444
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.00 E-value=1.7e-05 Score=60.53 Aligned_cols=126 Identities=24% Similarity=0.207 Sum_probs=84.0
Q ss_pred CCeeeccCCccccccccccc-CCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCC
Q 045822 50 LNGLSLYSNFLKCSIPLSLG-NLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSL 128 (331)
Q Consensus 50 L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L 128 (331)
=+.+++++..+.... . ++ -..+...++++++.+... ..|..+++|++|.+++|.++.++. ..-..+++|
T Consensus 21 e~e~~LR~lkip~ie-n-lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p------~L~~~~p~l 90 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE-N-LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDP------DLDTFLPNL 90 (233)
T ss_pred ccccccccccccchh-h-ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeecc------chhhhcccc
Confidence 355666666554211 1 21 234567888888887543 457788899999999998886542 223445788
Q ss_pred cEEEccccccCCcc-cccccCCCCCcEEEeecccCCCc---ccccccCCCCCCEEEccCCc
Q 045822 129 LNLQLDNNTLNGSI-PLSLGNLTNLTTLYFSTNALSGS---ISNEITNLRSISDLQLSENT 185 (331)
Q Consensus 129 ~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~ 185 (331)
+.|.+.+|.+.... ...+..+|+|++|.+-+|++... -...+..+|+|+.|++.+-.
T Consensus 91 ~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 91 KTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 89999988876432 12355778899999988877632 23456778888888877643
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=5.9e-06 Score=47.35 Aligned_cols=35 Identities=43% Similarity=0.651 Sum_probs=15.8
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCccc
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLS 37 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 37 (331)
|++|++++|+++ .++..++++++|++|++++|.+.
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 455555555554 22333455555555555555444
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.99 E-value=1.2e-07 Score=85.19 Aligned_cols=122 Identities=30% Similarity=0.418 Sum_probs=82.1
Q ss_pred ecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccc-cccCCCcccEEEeeccee
Q 045822 6 GLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPL-SLGNLTSLIYIGISNNLL 84 (331)
Q Consensus 6 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~ 84 (331)
+.++|.+. ....++.=++.++.|+|+.|++.+. +++..|++|++|++++|.+. .+|. ....|. |+.|.+++|.+
T Consensus 170 ~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 170 SFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred hcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHH
Confidence 34444444 3445566677888888888888765 37778888888888888776 3333 233343 88888888876
Q ss_pred eecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccC
Q 045822 85 FGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLN 139 (331)
Q Consensus 85 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 139 (331)
+.. ..+.++.+|+.|+++.|-+..... ...++.+..|+.|.+.||++.
T Consensus 245 ~tL--~gie~LksL~~LDlsyNll~~hse-----L~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 245 TTL--RGIENLKSLYGLDLSYNLLSEHSE-----LEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred Hhh--hhHHhhhhhhccchhHhhhhcchh-----hhHHHHHHHHHHHhhcCCccc
Confidence 543 446778888888888887765432 134666677778888887764
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=8.8e-06 Score=46.63 Aligned_cols=37 Identities=35% Similarity=0.512 Sum_probs=27.1
Q ss_pred cccEEEcccccccccCCCCCCCCCcceEEEeccceecc
Q 045822 272 SLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSR 309 (331)
Q Consensus 272 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 309 (331)
+|++|++++|++. .++..++++++|+.|++++|++++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4788888888887 455567888888888888888873
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.86 E-value=4.5e-05 Score=55.71 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=11.9
Q ss_pred ccCCCCCcEEEeecccCCCcccccccCCCCCCEEEcc
Q 045822 146 LGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLS 182 (331)
Q Consensus 146 ~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 182 (331)
|..+++++.+.+..+ +.......+..+++++.+.+.
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred ccccccccccccccc-ccccceeeeeccccccccccc
Confidence 334434444444332 222223333444344444443
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=0.00019 Score=62.04 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=82.4
Q ss_pred hhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCcc
Q 045822 122 IRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLV 201 (331)
Q Consensus 122 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 201 (331)
+..+++++.|++++|.+. .+| . -..+|+.|.+.+|......+..+ .++|++|.+.+|...... .++|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL------P~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL------PESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc------ccccc
Confidence 555788889999988776 334 1 23468899988764433444444 257888888887322122 24677
Q ss_pred EEEeecCcCCCCCCcccccc-CCccEEEccCCccCc--cccccccCCCcccEEEccCCccccccchhhhhccccccEEEc
Q 045822 202 VLDLSINKLSGSIPLSFASL-TSLTTLYLYENSLCD--SIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSL 278 (331)
Q Consensus 202 ~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l 278 (331)
.|.+..+.... +..+ ++|+.|.+.+++... ..+.. -.++|+.|++++|... ..+.. .+.+|+.|.+
T Consensus 116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~---LP~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEK---LPESLQSITL 184 (426)
T ss_pred eEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccc---ccccCcEEEe
Confidence 88877654331 1122 467788875433111 11111 2378899999888755 33322 3346888888
Q ss_pred cccc
Q 045822 279 SSNN 282 (331)
Q Consensus 279 ~~~~ 282 (331)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 7653
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=0.00022 Score=61.60 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=39.3
Q ss_pred CCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCe
Q 045822 21 GHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSD 100 (331)
Q Consensus 21 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 100 (331)
..|+++++|++++|.+... |. -.++|+.|.+.+|.-...+|..++ ++|++|.+++|......| +.|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccce
Confidence 3456777777777765532 21 122477777766543334444332 467777777663211122 34666
Q ss_pred EEeecCc
Q 045822 101 LRLYNNT 107 (331)
Q Consensus 101 L~l~~~~ 107 (331)
|++.++.
T Consensus 117 L~L~~n~ 123 (426)
T PRK15386 117 LEIKGSA 123 (426)
T ss_pred EEeCCCC
Confidence 6665443
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.63 E-value=5e-06 Score=75.34 Aligned_cols=130 Identities=19% Similarity=0.147 Sum_probs=66.5
Q ss_pred cCcCCCeeeccCCccccc--ccccccCCCcccEEEeecc-eeeec----CcccccCCCCCCeEEeecCc-ccCCCCccCC
Q 045822 46 RLSSLNGLSLYSNFLKCS--IPLSLGNLTSLIYIGISNN-LLFGL----IPNEVGSLKSLSDLRLYNNT-LKNMNALSGS 117 (331)
Q Consensus 46 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 117 (331)
.++.|+.+.+.++.-... .......+++|+.|+++++ ..... .......+.+|++++++++. +++..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~----- 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG----- 260 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-----
Confidence 467777777776643212 2334456777777777652 11101 11223456777777777765 44321
Q ss_pred chhhhh-CCcCCcEEEccccc-cCCccccc-ccCCCCCcEEEeecccCC-Cc-ccccccCCCCCCEEEc
Q 045822 118 IPDEIR-NLKSLLNLQLDNNT-LNGSIPLS-LGNLTNLTTLYFSTNALS-GS-ISNEITNLRSISDLQL 181 (331)
Q Consensus 118 ~~~~l~-~~~~L~~L~l~~~~-~~~~~~~~-~~~~~~L~~l~l~~~~~~-~~-~~~~l~~~~~L~~L~l 181 (331)
-..++ .+++|+.|.+..+. +++..... ...++.|++++++++... +. .......+++++.+.+
T Consensus 261 -l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 261 -LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred -HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 12232 26777777766665 44332222 234666777777776432 11 2222334555555443
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=8.4e-06 Score=73.89 Aligned_cols=240 Identities=25% Similarity=0.172 Sum_probs=130.9
Q ss_pred cCCCCCccEEEeccCc-ccCC-ChhhhccCcCCCeeeccCC-ccccc----ccccccCCCcccEEEeecce-eeecCccc
Q 045822 20 IGHLTHLKLLSFSKNQ-LSGL-IPHEIGRLSSLNGLSLYSN-FLKCS----IPLSLGNLTSLIYIGISNNL-LFGLIPNE 91 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~-~~~~~~~~ 91 (331)
...++.|+.+.+.++. +... .......++.|+.|+++++ ..... .......+++|+.++++.+. +++..-..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 3457889999888774 3322 2344457889999999873 21111 12233457889999998887 55444444
Q ss_pred cc-CCCCCCeEEeecCc-ccCCCCccCCchhhhhCCcCCcEEEccccccC-Cc-ccccccCCCCCcEEEeecccCCCccc
Q 045822 92 VG-SLKSLSDLRLYNNT-LKNMNALSGSIPDEIRNLKSLLNLQLDNNTLN-GS-IPLSLGNLTNLTTLYFSTNALSGSIS 167 (331)
Q Consensus 92 ~~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~-~~~~~~~~~~L~~l~l~~~~~~~~~~ 167 (331)
+. .+++|++|.+.++. +++. .+......++.|++|+++++... +. .......+++++.+.+....-
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~-----gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----- 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDE-----GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----- 333 (482)
T ss_pred HHhhCCCcceEccCCCCccchh-----HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----
Confidence 44 48899999977665 3432 23345666888999999877542 11 112233456666655433211
Q ss_pred ccccCCCCCCEEEccCCcC---CCCcchhhhCCCCccEEEeecCcCCCCC-CccccccCCccEEEccCCccCcccccccc
Q 045822 168 NEITNLRSISDLQLSENTL---DGSIPLALGNLIKLVVLDLSINKLSGSI-PLSFASLTSLTTLYLYENSLCDSIQKEIG 243 (331)
Q Consensus 168 ~~l~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 243 (331)
++.++.+.+.+... ..........++.++.+.+..+...... ...+.+++.|. ..+..+. .
T Consensus 334 -----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~---------~ 398 (482)
T KOG1947|consen 334 -----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRL---------C 398 (482)
T ss_pred -----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHh---------c
Confidence 33444444443322 1223344567778888888777744333 23445555552 2221111 1
Q ss_pred CCCcccEEEccCCccc-cccchhhhhccccccEEEccccccc
Q 045822 244 DMKSLSILDLSSNKLN-GSIPLSLTNLTNSLKVLSLSSNNIV 284 (331)
Q Consensus 244 ~~~~L~~L~ls~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~ 284 (331)
....++.|+++.+... .............++.+++.++...
T Consensus 399 ~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 399 RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 1222777777777633 2222222211333677777777544
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=6.5e-05 Score=59.79 Aligned_cols=106 Identities=21% Similarity=0.181 Sum_probs=57.1
Q ss_pred CcCCCeeeccCCcccccccccccCCCcccEEEeecc--eeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhC
Q 045822 47 LSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNN--LLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRN 124 (331)
Q Consensus 47 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 124 (331)
+..|+.+.+.+...+ ....++.+++|+.|.++.| .+..-.+-...++|+|+++++++|+++.++. + ..+..
T Consensus 42 ~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst----l-~pl~~ 114 (260)
T KOG2739|consen 42 FVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST----L-RPLKE 114 (260)
T ss_pred ccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc----c-chhhh
Confidence 345555555555443 2234556667777777776 3332222223455777777777777765432 1 33555
Q ss_pred CcCCcEEEccccccCCcc---cccccCCCCCcEEEeec
Q 045822 125 LKSLLNLQLDNNTLNGSI---PLSLGNLTNLTTLYFST 159 (331)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~l~l~~ 159 (331)
+.+|..|.+..|...... ...|.-+++|++++...
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 666666777666544311 11244456666666544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=2.8e-05 Score=62.42 Aligned_cols=77 Identities=26% Similarity=0.173 Sum_probs=36.0
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccc-cccccCCCcccEEEeec
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSI-PLSLGNLTSLIYIGISN 81 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~ 81 (331)
+.|+..||.+.++.. ..+||.|+.|.|+=|+|... ..+..|.+|+.|.|..|.|.+.. ...+.++|+|+.|.+..
T Consensus 22 kKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 22 KKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhhcccCCCccHHHH--HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 344555555442211 24555555555555555432 33445555555555555554211 12334455555555544
Q ss_pred ce
Q 045822 82 NL 83 (331)
Q Consensus 82 ~~ 83 (331)
|+
T Consensus 98 NP 99 (388)
T KOG2123|consen 98 NP 99 (388)
T ss_pred CC
Confidence 43
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=2.5e-05 Score=62.70 Aligned_cols=106 Identities=23% Similarity=0.146 Sum_probs=75.0
Q ss_pred CCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecC-cccccCCCCCCe
Q 045822 22 HLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLI-PNEVGSLKSLSD 100 (331)
Q Consensus 22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~ 100 (331)
.+.+.+.|++.||++.++ ....+++.|+.|.|+-|.|+ ....+..|.+|+.|+++.|.+.... ...+.++|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs--sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS--SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc--cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 355788899999988765 34457899999999999887 3456778999999999998876542 245678999999
Q ss_pred EEeecCcccCCCCccCCchhhhhCCcCCcEEE
Q 045822 101 LRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQ 132 (331)
Q Consensus 101 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 132 (331)
|.+..|....-.+-. .-...+..+|+|+.|+
T Consensus 93 LWL~ENPCc~~ag~n-YR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQN-YRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchh-HHHHHHHHcccchhcc
Confidence 999887644211100 1112466677877775
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.00021 Score=56.93 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=79.6
Q ss_pred CCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCC--cccccccccccCCCcccEEEeecceeeec-Ccccc
Q 045822 16 IPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSN--FLKCSIPLSLGNLTSLIYIGISNNLLFGL-IPNEV 92 (331)
Q Consensus 16 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~ 92 (331)
.......+..|+.+++.+...+.. ..+..+|+|+.|.++.| ++...+.....++|+|+++.+++|.+... .-..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 444456667788888877776633 45667889999999999 55544555556779999999999987631 11235
Q ss_pred cCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccc
Q 045822 93 GSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDN 135 (331)
Q Consensus 93 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 135 (331)
..+.+|..|++.+|..+.... .--..+.-+++|++++-..
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~d---yre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDD---YREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcchhhhhcccCCcccccc---HHHHHHHHhhhhccccccc
Confidence 667888899999888775332 2223566678888776544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.83 E-value=0.00058 Score=32.50 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=15.5
Q ss_pred cceEEEeccceeccccChhhHH
Q 045822 296 SLIQLILTNNELSRQLSPELGS 317 (331)
Q Consensus 296 ~L~~L~l~~~~~~~~~p~~~~~ 317 (331)
+|++|++++|+++ .+|+.|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4778888888888 67776654
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.00019 Score=54.98 Aligned_cols=81 Identities=22% Similarity=0.159 Sum_probs=39.4
Q ss_pred ccEEEccCCccCccccccccCCCcccEEEccCCcccc-ccchhhhhccccccEEEcccc-cccccCCCCCCCCCcceEEE
Q 045822 224 LTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG-SIPLSLTNLTNSLKVLSLSSN-NIVGEIPLGHGKFSSLIQLI 301 (331)
Q Consensus 224 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~-~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~ 301 (331)
++.++-+++.+..+..+.+..++.++.|.+.+|...+ .....+....++|+.|+|++| +|++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4445555555555555555555555555555554322 222223333444566666655 34444444455555555555
Q ss_pred ecc
Q 045822 302 LTN 304 (331)
Q Consensus 302 l~~ 304 (331)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.73 E-value=0.0042 Score=29.45 Aligned_cols=13 Identities=38% Similarity=0.457 Sum_probs=8.0
Q ss_pred CccEEeccccccc
Q 045822 1 MLKFLGLSFNQFY 13 (331)
Q Consensus 1 ~L~~L~l~~~~~~ 13 (331)
+|++|++++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4566666666665
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.28 E-value=0.0074 Score=29.29 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=15.4
Q ss_pred CCcceEEEeccceeccccChhhH
Q 045822 294 FSSLIQLILTNNELSRQLSPELG 316 (331)
Q Consensus 294 ~~~L~~L~l~~~~~~~~~p~~~~ 316 (331)
+++|++|+|++|+|++..+..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46788899999988877666654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.22 E-value=0.013 Score=25.77 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=7.4
Q ss_pred CcceEEEeccceec
Q 045822 295 SSLIQLILTNNELS 308 (331)
Q Consensus 295 ~~L~~L~l~~~~~~ 308 (331)
++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35677777777765
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.0016 Score=50.06 Aligned_cols=82 Identities=21% Similarity=0.075 Sum_probs=54.3
Q ss_pred CccEEEeccCcccCCChhhhccCcCCCeeeccCCccc-cccccccc-CCCcccEEEeecce-eeecCcccccCCCCCCeE
Q 045822 25 HLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLK-CSIPLSLG-NLTSLIYIGISNNL-LFGLIPNEVGSLKSLSDL 101 (331)
Q Consensus 25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L 101 (331)
.++.++-+++.+..+..+.+..++.++.|.+.+|.-- +.-.+.++ -.++|+.|++++|. |++..-..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3666777777777666677778888888888887532 22122222 35789999999875 444333446677888888
Q ss_pred EeecC
Q 045822 102 RLYNN 106 (331)
Q Consensus 102 ~l~~~ 106 (331)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77653
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.46 E-value=9.1e-05 Score=66.09 Aligned_cols=205 Identities=27% Similarity=0.261 Sum_probs=115.6
Q ss_pred CCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCccccc----ccCC-CCCcEEEeecccCCCc----ccc
Q 045822 98 LSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLS----LGNL-TNLTTLYFSTNALSGS----ISN 168 (331)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~l~l~~~~~~~~----~~~ 168 (331)
+.++.+.+|.+.+.+. ..+...+...+.|+.|+++++++.+..... +... ..++++.+..|.++.. ...
T Consensus 89 l~~L~L~~~~l~~~~~--~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGA--EELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchH--HHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 5666666666554321 134456677777888888888776322211 2222 3466677766666533 333
Q ss_pred cccCCCCCCEEEccCCcCCCC----cchhh----hCCCCccEEEeecCcCCCCC----CccccccCC-ccEEEccCCccC
Q 045822 169 EITNLRSISDLQLSENTLDGS----IPLAL----GNLIKLVVLDLSINKLSGSI----PLSFASLTS-LTTLYLYENSLC 235 (331)
Q Consensus 169 ~l~~~~~L~~L~l~~~~~~~~----~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~~~~~ 235 (331)
.+.....++.+++..|.+... ....+ ....++++|++++|.++... ...+...+. +..+++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 455566777778777765321 11122 24566788888888776321 222333444 566788887776
Q ss_pred ccc----cccccCC-CcccEEEccCCccccccchhh----hhccccccEEEcccccccccC----CCCCCCCCcceEEEe
Q 045822 236 DSI----QKEIGDM-KSLSILDLSSNKLNGSIPLSL----TNLTNSLKVLSLSSNNIVGEI----PLGHGKFSSLIQLIL 302 (331)
Q Consensus 236 ~~~----~~~~~~~-~~L~~L~ls~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l 302 (331)
+.. ...+..+ ++++.++++.|.++......+ ..+. +++++.+++|++.+.. .........+.++.+
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l 325 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLTDYGVELLLEALERKTPLLHLVL 325 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhcccCccccHHHHHHHHHhhhcccchhhhc
Confidence 532 2333344 677888888888776544433 2333 5788888888776432 223333345555555
Q ss_pred ccc
Q 045822 303 TNN 305 (331)
Q Consensus 303 ~~~ 305 (331)
.++
T Consensus 326 ~~~ 328 (478)
T KOG4308|consen 326 GGT 328 (478)
T ss_pred ccc
Confidence 544
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.78 E-value=0.36 Score=23.68 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=11.0
Q ss_pred CCccEEEeccCcccCCChhhh
Q 045822 24 THLKLLSFSKNQLSGLIPHEI 44 (331)
Q Consensus 24 ~~L~~L~l~~~~~~~~~~~~~ 44 (331)
++|++|++++|++..+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666665554444333
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.78 E-value=0.36 Score=23.68 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=11.0
Q ss_pred CCccEEEeccCcccCCChhhh
Q 045822 24 THLKLLSFSKNQLSGLIPHEI 44 (331)
Q Consensus 24 ~~L~~L~l~~~~~~~~~~~~~ 44 (331)
++|++|++++|++..+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666665554444333
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.25 E-value=0.0026 Score=56.98 Aligned_cols=183 Identities=30% Similarity=0.304 Sum_probs=112.0
Q ss_pred CcEEEccccccCCccc----ccccCCCCCcEEEeecccCCCcccc----cccCC-CCCCEEEccCCcCCCC----cchhh
Q 045822 128 LLNLQLDNNTLNGSIP----LSLGNLTNLTTLYFSTNALSGSISN----EITNL-RSISDLQLSENTLDGS----IPLAL 194 (331)
Q Consensus 128 L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~----~~~~~ 194 (331)
+..+.+.+|.+.+... ..+...+.|..+++++|.+...... .+... ..++.|.+..|.+... ....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5667777777764332 2344567788888888877643222 22332 4566677777766532 22344
Q ss_pred hCCCCccEEEeecCcCCCC----CCcccc----ccCCccEEEccCCccCccc----cccccCCCc-ccEEEccCCccccc
Q 045822 195 GNLIKLVVLDLSINKLSGS----IPLSFA----SLTSLTTLYLYENSLCDSI----QKEIGDMKS-LSILDLSSNKLNGS 261 (331)
Q Consensus 195 ~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~ls~~~~~~~ 261 (331)
.....++.++++.|.+... .+..+. ...++++|++.+|.++... ...+...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4567788888888776422 122222 3567888888888876422 233444555 66688888887755
Q ss_pred cchhhhhcc----ccccEEEccccccccc----CCCCCCCCCcceEEEeccceeccc
Q 045822 262 IPLSLTNLT----NSLKVLSLSSNNIVGE----IPLGHGKFSSLIQLILTNNELSRQ 310 (331)
Q Consensus 262 ~~~~~~~~~----~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~ 310 (331)
......... ..++.++++.|.+.+. +...+..++.++.+.+.+|++.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 433332222 2367888888888753 334556677888888888888643
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.62 E-value=0.3 Score=24.05 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=11.2
Q ss_pred CCcceEEEeccc-eeccc
Q 045822 294 FSSLIQLILTNN-ELSRQ 310 (331)
Q Consensus 294 ~~~L~~L~l~~~-~~~~~ 310 (331)
|+.|++|+|++| .+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467777777777 35543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.25 E-value=0.023 Score=44.97 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=67.3
Q ss_pred CcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCC
Q 045822 17 PPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLK 96 (331)
Q Consensus 17 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 96 (331)
-..+..+...+.|+++.++.... -..|+.+..+.+++++.+.+. ..|..++....+..++...|... ..|.++...+
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred hhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 34467888889999998876532 234556678888999988876 67777777778888888777665 4577888888
Q ss_pred CCCeEEeecCccc
Q 045822 97 SLSDLRLYNNTLK 109 (331)
Q Consensus 97 ~L~~L~l~~~~~~ 109 (331)
.+++++..++.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 9998888887643
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.88 E-value=0.84 Score=22.93 Aligned_cols=21 Identities=48% Similarity=0.460 Sum_probs=12.4
Q ss_pred CcccEEEccCCccccccchhh
Q 045822 246 KSLSILDLSSNKLNGSIPLSL 266 (331)
Q Consensus 246 ~~L~~L~ls~~~~~~~~~~~~ 266 (331)
++|+.|++++|.+.++....+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 456677777776665444333
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.99 E-value=0.05 Score=43.17 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=62.1
Q ss_pred hccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhh
Q 045822 44 IGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIR 123 (331)
Q Consensus 44 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 123 (331)
+..+...+.|+++.++.. ..-..|..+..+..++++.+.+. ..|..+.....+.++....|..+ ..|.++.
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-------~~p~s~~ 108 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-------QQPKSQK 108 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-------hCCcccc
Confidence 445667788888887765 34455566677888888877765 45677777777777777777665 4457788
Q ss_pred CCcCCcEEEccccccC
Q 045822 124 NLKSLLNLQLDNNTLN 139 (331)
Q Consensus 124 ~~~~L~~L~l~~~~~~ 139 (331)
..+++++++..++++.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 8888888888877754
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.49 E-value=1.3 Score=21.86 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=12.4
Q ss_pred CcceEEEeccceeccccCh
Q 045822 295 SSLIQLILTNNELSRQLSP 313 (331)
Q Consensus 295 ~~L~~L~l~~~~~~~~~p~ 313 (331)
++|+.|++++|+++ .+|.
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46777778877776 5554
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.11 E-value=2.3 Score=20.96 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=9.6
Q ss_pred CCCCeEEeecCcccCCC
Q 045822 96 KSLSDLRLYNNTLKNMN 112 (331)
Q Consensus 96 ~~L~~L~l~~~~~~~~~ 112 (331)
.+|+.|+++.|+++.++
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45666666666655443
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.16 E-value=2.5 Score=38.26 Aligned_cols=36 Identities=28% Similarity=0.229 Sum_probs=16.2
Q ss_pred CCCccEEEeecCcCCCC--CCccccccCCccEEEccCC
Q 045822 197 LIKLVVLDLSINKLSGS--IPLSFASLTSLTTLYLYEN 232 (331)
Q Consensus 197 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 232 (331)
.+.+..+++++|++... ........|.|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555555554421 1111123355555555555
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.37 E-value=3.8 Score=37.15 Aligned_cols=35 Identities=37% Similarity=0.254 Sum_probs=14.9
Q ss_pred CCCCEEEccCCcCCCC--cchhhhCCCCccEEEeecC
Q 045822 174 RSISDLQLSENTLDGS--IPLALGNLIKLVVLDLSIN 208 (331)
Q Consensus 174 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 208 (331)
+.+..+.+++|++.+. ........|+|..|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4444555555544321 1112223345555555555
No 89
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=20.03 E-value=1.8e+02 Score=16.16 Aligned_cols=7 Identities=43% Similarity=0.624 Sum_probs=2.7
Q ss_pred CccEEEc
Q 045822 223 SLTTLYL 229 (331)
Q Consensus 223 ~L~~L~l 229 (331)
++++|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 3333333
Done!