Query 045822
Match_columns 331
No_of_seqs 169 out of 2743
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 09:52:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-37 4.2E-42 294.0 24.9 312 1-319 295-704 (768)
2 3rgz_A Protein brassinosteroid 100.0 9.3E-38 3.2E-42 294.8 24.0 321 1-321 270-682 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 4.8E-37 1.6E-41 274.0 20.8 305 1-312 31-412 (455)
4 2id5_A Lingo-1, leucine rich r 100.0 3.9E-36 1.4E-40 269.6 23.9 302 1-309 33-334 (477)
5 3t6q_A CD180 antigen; protein- 100.0 2.1E-35 7.3E-40 272.5 22.6 306 1-314 34-419 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.7E-35 1.6E-39 270.2 21.7 108 2-109 58-166 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.9E-34 9.9E-39 264.9 26.3 302 1-309 58-463 (606)
8 2id5_A Lingo-1, leucine rich r 100.0 3E-34 1E-38 257.3 23.5 308 3-320 14-321 (477)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-34 4.4E-39 267.2 21.2 147 170-318 395-543 (606)
10 4eco_A Uncharacterized protein 100.0 1.2E-34 4.1E-39 267.9 20.8 302 1-316 250-586 (636)
11 3v47_A TOLL-like receptor 5B a 100.0 2.1E-34 7.3E-39 256.9 21.3 306 4-320 14-396 (455)
12 4eco_A Uncharacterized protein 100.0 9.7E-35 3.3E-39 268.5 18.3 309 1-321 207-568 (636)
13 2z63_A TOLL-like receptor 4, v 100.0 3.4E-34 1.2E-38 262.6 21.6 121 197-318 395-517 (570)
14 2z7x_B TOLL-like receptor 1, v 100.0 9.6E-34 3.3E-38 256.8 22.9 106 1-109 22-128 (520)
15 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-33 1.1E-37 255.5 24.7 301 1-318 53-496 (562)
16 2z63_A TOLL-like receptor 4, v 100.0 4.1E-33 1.4E-37 255.5 22.6 143 170-313 392-536 (570)
17 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-32 7.3E-37 255.7 27.4 314 2-316 250-605 (680)
18 4fmz_A Internalin; leucine ric 100.0 3.8E-32 1.3E-36 233.8 26.5 284 1-312 45-328 (347)
19 4ecn_A Leucine-rich repeat pro 100.0 3.8E-33 1.3E-37 262.7 21.8 300 1-316 449-826 (876)
20 3j0a_A TOLL-like receptor 5; m 100.0 6.8E-33 2.3E-37 264.1 23.9 302 1-308 25-375 (844)
21 4fmz_A Internalin; leucine ric 100.0 3.3E-32 1.1E-36 234.2 25.3 280 1-308 67-346 (347)
22 3o6n_A APL1; leucine-rich repe 100.0 2E-32 6.9E-37 239.2 24.0 293 1-310 46-354 (390)
23 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-32 6.6E-37 248.2 24.7 126 3-139 3-128 (520)
24 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-32 1.1E-36 254.5 25.1 319 2-320 51-505 (680)
25 1o6v_A Internalin A; bacterial 100.0 2.3E-31 7.9E-36 237.7 28.1 283 1-312 69-370 (466)
26 3oja_B Anopheles plasmodium-re 100.0 2E-31 6.7E-36 245.0 25.8 292 2-310 53-360 (597)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-31 4.1E-36 245.0 24.1 299 3-318 34-472 (562)
28 4ecn_A Leucine-rich repeat pro 100.0 6.7E-32 2.3E-36 254.3 22.7 302 1-319 492-851 (876)
29 2z81_A CD282 antigen, TOLL-lik 100.0 5E-32 1.7E-36 247.2 21.1 305 1-314 27-428 (549)
30 2z81_A CD282 antigen, TOLL-lik 100.0 5.5E-32 1.9E-36 246.9 20.0 140 1-140 51-210 (549)
31 1xku_A Decorin; proteoglycan, 100.0 5.8E-31 2E-35 224.8 25.0 288 2-305 33-329 (330)
32 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-31 5.2E-36 228.6 20.8 275 25-317 34-318 (332)
33 3oja_B Anopheles plasmodium-re 100.0 6.2E-32 2.1E-36 248.3 18.9 274 22-311 49-340 (597)
34 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-30 4.8E-35 241.5 24.3 312 1-318 53-565 (635)
35 1xku_A Decorin; proteoglycan, 100.0 4.7E-30 1.6E-34 219.2 25.0 271 1-282 53-330 (330)
36 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-30 3.8E-35 249.0 23.3 306 3-319 7-362 (844)
37 3o6n_A APL1; leucine-rich repe 100.0 6.1E-31 2.1E-35 229.8 19.2 273 22-310 43-333 (390)
38 1ogq_A PGIP-2, polygalacturona 100.0 2E-31 6.9E-36 225.6 15.5 250 24-283 50-303 (313)
39 1o6v_A Internalin A; bacterial 100.0 1.2E-29 4.1E-34 226.6 27.8 294 1-319 47-353 (466)
40 2ft3_A Biglycan; proteoglycan, 100.0 7.5E-30 2.5E-34 218.1 21.3 289 1-306 34-331 (332)
41 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-30 3.9E-35 221.0 14.4 252 48-309 50-306 (313)
42 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-28 5E-33 218.2 23.3 274 1-309 43-353 (457)
43 4g8a_A TOLL-like receptor 4; l 100.0 1E-27 3.6E-32 222.2 25.0 307 1-308 77-580 (635)
44 2z66_A Variable lymphocyte rec 100.0 3.1E-28 1.1E-32 205.7 19.3 250 3-261 10-263 (306)
45 2z80_A TOLL-like receptor 2, v 100.0 3E-28 1E-32 209.9 18.4 283 20-312 27-318 (353)
46 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-27 8.1E-32 210.4 23.9 283 1-317 65-396 (457)
47 2z80_A TOLL-like receptor 2, v 100.0 4.9E-28 1.7E-32 208.5 18.2 274 4-286 35-316 (353)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.5E-31 8.4E-36 237.5 -3.7 307 2-310 30-413 (461)
49 4fcg_A Uncharacterized protein 100.0 2.1E-27 7.1E-32 202.1 20.0 226 23-259 80-314 (328)
50 2z66_A Variable lymphocyte rec 100.0 1.4E-27 4.7E-32 201.7 18.1 249 27-309 10-262 (306)
51 3zyi_A Leucine-rich repeat-con 100.0 6.8E-27 2.3E-31 208.0 22.0 245 4-259 58-303 (452)
52 1ozn_A Reticulon 4 receptor; N 100.0 1.8E-27 6.1E-32 199.0 17.1 253 27-291 14-268 (285)
53 1z7x_W Ribonuclease inhibitor; 100.0 2.5E-30 8.4E-35 231.0 -1.0 323 2-327 87-459 (461)
54 3zyj_A Leucine-rich repeat-con 100.0 9.1E-27 3.1E-31 206.5 21.6 245 4-259 47-292 (440)
55 4fcg_A Uncharacterized protein 100.0 1.8E-26 6.1E-31 196.4 21.6 234 48-308 81-314 (328)
56 1ozn_A Reticulon 4 receptor; N 99.9 3.2E-27 1.1E-31 197.4 15.4 254 3-266 14-268 (285)
57 3g06_A SSPH2 (leucine-rich rep 99.9 1E-25 3.5E-30 205.8 26.2 270 1-321 41-310 (622)
58 3zyi_A Leucine-rich repeat-con 99.9 2.1E-26 7.1E-31 204.9 20.5 227 1-235 76-303 (452)
59 3o53_A Protein LRIM1, AGAP0063 99.9 6.9E-28 2.3E-32 204.4 9.9 281 3-305 13-296 (317)
60 3zyj_A Leucine-rich repeat-con 99.9 3.4E-26 1.2E-30 202.8 20.5 227 1-235 65-292 (440)
61 1jl5_A Outer protein YOPM; leu 99.9 1.1E-25 3.7E-30 199.6 23.5 258 25-319 132-422 (454)
62 1wwl_A Monocyte differentiatio 99.9 6.4E-27 2.2E-31 198.0 7.9 249 44-309 39-310 (312)
63 3o53_A Protein LRIM1, AGAP0063 99.9 3.8E-26 1.3E-30 193.7 12.1 259 26-305 12-272 (317)
64 1jl5_A Outer protein YOPM; leu 99.9 3.1E-24 1.1E-28 190.2 24.7 234 48-318 131-382 (454)
65 1wwl_A Monocyte differentiatio 99.9 4.1E-26 1.4E-30 193.1 9.4 249 20-285 39-310 (312)
66 3oja_A Leucine-rich immune mol 99.9 1.6E-25 5.3E-30 200.4 12.7 241 20-281 30-272 (487)
67 3oja_A Leucine-rich immune mol 99.9 9.2E-25 3.2E-29 195.4 14.0 225 47-316 33-259 (487)
68 3ogk_B Coronatine-insensitive 99.9 3.4E-26 1.2E-30 210.4 3.8 309 2-311 140-529 (592)
69 2z62_A TOLL-like receptor 4, v 99.9 9E-24 3.1E-28 175.6 15.9 220 7-236 14-238 (276)
70 2z62_A TOLL-like receptor 4, v 99.9 3.5E-23 1.2E-27 172.1 18.0 224 29-262 12-240 (276)
71 3ogk_B Coronatine-insensitive 99.9 1.4E-25 4.6E-30 206.5 3.1 301 1-307 165-550 (592)
72 2o6q_A Variable lymphocyte rec 99.9 1.4E-22 4.8E-27 167.8 20.6 202 25-235 17-218 (270)
73 2o6q_A Variable lymphocyte rec 99.9 1.7E-22 5.7E-27 167.3 20.7 204 49-261 17-220 (270)
74 3rfs_A Internalin B, repeat mo 99.9 1.8E-23 6.2E-28 173.3 13.2 227 49-295 20-246 (272)
75 3rfs_A Internalin B, repeat mo 99.9 1.6E-23 5.6E-28 173.6 12.6 210 44-270 37-246 (272)
76 2ca6_A RAN GTPase-activating p 99.9 5.1E-25 1.7E-29 192.0 3.4 250 40-311 24-319 (386)
77 3goz_A Leucine-rich repeat-con 99.9 1.8E-24 6E-29 186.8 6.5 262 4-267 2-305 (362)
78 2ast_B S-phase kinase-associat 99.9 1.4E-23 4.7E-28 179.6 11.8 254 25-292 48-314 (336)
79 2ast_B S-phase kinase-associat 99.9 1.3E-24 4.5E-29 185.9 4.6 254 2-267 49-314 (336)
80 3goz_A Leucine-rich repeat-con 99.9 5.1E-24 1.7E-28 184.0 8.2 228 28-257 2-264 (362)
81 3g06_A SSPH2 (leucine-rich rep 99.9 1.8E-21 6.1E-26 177.9 24.9 246 25-321 41-286 (622)
82 2p1m_B Transport inhibitor res 99.9 3.1E-24 1.1E-28 197.5 5.4 150 173-326 371-534 (594)
83 1p9a_G Platelet glycoprotein I 99.9 7.7E-22 2.6E-26 164.8 18.9 202 20-234 6-207 (290)
84 2ca6_A RAN GTPase-activating p 99.9 5.2E-25 1.8E-29 192.0 -0.4 263 15-279 23-338 (386)
85 2p1m_B Transport inhibitor res 99.9 9.3E-25 3.2E-29 201.0 1.2 191 124-316 287-502 (594)
86 1p9a_G Platelet glycoprotein I 99.9 1.7E-21 5.9E-26 162.7 19.0 204 44-260 6-209 (290)
87 2xwt_C Thyrotropin receptor; s 99.9 1.1E-21 3.8E-26 159.4 14.4 196 49-256 32-236 (239)
88 2xwt_C Thyrotropin receptor; s 99.9 1.7E-21 5.7E-26 158.4 14.4 198 24-233 31-237 (239)
89 1h6u_A Internalin H; cell adhe 99.9 4.8E-21 1.6E-25 161.5 17.3 191 47-259 40-230 (308)
90 1h6u_A Internalin H; cell adhe 99.9 9.1E-21 3.1E-25 159.8 17.5 209 52-285 23-231 (308)
91 4glp_A Monocyte differentiatio 99.9 4.4E-21 1.5E-25 162.0 14.5 228 2-236 66-308 (310)
92 3m19_A Variable lymphocyte rec 99.9 3.1E-20 1.1E-24 152.0 17.7 175 3-186 17-191 (251)
93 4glp_A Monocyte differentiatio 99.8 4.2E-21 1.4E-25 162.2 11.9 229 48-285 64-308 (310)
94 3m19_A Variable lymphocyte rec 99.8 5.2E-20 1.8E-24 150.6 17.7 134 126-259 35-168 (251)
95 2o6s_A Variable lymphocyte rec 99.8 3.3E-19 1.1E-23 141.6 13.3 163 126-296 28-190 (208)
96 4ay9_X Follicle-stimulating ho 99.8 1.8E-18 6.1E-23 148.5 18.5 240 3-256 12-256 (350)
97 4ay9_X Follicle-stimulating ho 99.8 2.3E-18 7.9E-23 147.8 17.8 240 27-281 12-256 (350)
98 2o6s_A Variable lymphocyte rec 99.8 5.2E-19 1.8E-23 140.5 12.1 181 129-320 10-190 (208)
99 1m9s_A Internalin B; cell inva 99.8 9.1E-18 3.1E-22 153.2 17.5 175 45-239 40-214 (605)
100 1h6t_A Internalin B; cell adhe 99.8 3.2E-18 1.1E-22 142.9 13.1 171 46-236 44-214 (291)
101 3cvr_A Invasion plasmid antige 99.8 8.6E-18 3E-22 151.8 16.6 169 126-320 80-255 (571)
102 1h6t_A Internalin B; cell adhe 99.8 4.4E-18 1.5E-22 142.1 13.6 171 21-211 43-213 (291)
103 4ezg_A Putative uncharacterize 99.8 1.1E-17 3.8E-22 131.5 14.1 154 20-187 40-194 (197)
104 3sb4_A Hypothetical leucine ri 99.7 4.9E-18 1.7E-22 144.5 11.1 265 1-277 50-327 (329)
105 1m9s_A Internalin B; cell inva 99.7 6.3E-18 2.1E-22 154.3 12.3 174 20-213 39-212 (605)
106 2v9t_B SLIT homolog 2 protein 99.7 3E-17 1E-21 131.3 14.3 152 27-187 14-165 (220)
107 3e6j_A Variable lymphocyte rec 99.7 4.6E-17 1.6E-21 131.1 15.0 152 26-187 21-172 (229)
108 4ezg_A Putative uncharacterize 99.7 2.4E-17 8.3E-22 129.6 13.1 154 147-309 41-195 (197)
109 3sb4_A Hypothetical leucine ri 99.7 1.7E-18 5.9E-23 147.3 6.8 278 23-318 24-320 (329)
110 2v9t_B SLIT homolog 2 protein 99.7 5.2E-17 1.8E-21 129.9 13.8 153 99-260 14-166 (220)
111 3e6j_A Variable lymphocyte rec 99.7 1.5E-16 5.3E-21 128.0 15.5 133 174-308 40-172 (229)
112 2v70_A SLIT-2, SLIT homolog 2 99.7 9.2E-17 3.2E-21 128.4 14.0 152 27-187 14-166 (220)
113 2xot_A Amphoterin-induced prot 99.7 4E-17 1.4E-21 140.6 12.6 176 3-187 21-202 (361)
114 3cvr_A Invasion plasmid antige 99.7 1E-16 3.5E-21 144.9 15.4 185 25-243 60-251 (571)
115 4fdw_A Leucine rich hypothetic 99.7 7.4E-16 2.5E-20 134.0 19.4 267 21-307 110-382 (401)
116 2v70_A SLIT-2, SLIT homolog 2 99.7 2.1E-16 7.2E-21 126.3 14.5 155 99-262 14-169 (220)
117 2xot_A Amphoterin-induced prot 99.7 4E-17 1.4E-21 140.6 11.1 157 1-163 40-202 (361)
118 1xeu_A Internalin C; cellular 99.7 1.1E-16 3.8E-21 131.5 11.4 149 122-284 37-185 (263)
119 4fdw_A Leucine rich hypothetic 99.7 2.5E-15 8.6E-20 130.6 19.8 254 46-319 111-369 (401)
120 1xeu_A Internalin C; cellular 99.7 7E-17 2.4E-21 132.7 9.2 171 22-213 17-187 (263)
121 2ell_A Acidic leucine-rich nuc 99.6 6.1E-16 2.1E-20 118.4 9.4 135 22-163 22-160 (168)
122 2je0_A Acidic leucine-rich nuc 99.6 1.2E-15 4.2E-20 114.2 8.2 127 24-157 17-147 (149)
123 2ell_A Acidic leucine-rich nuc 99.6 5.6E-15 1.9E-19 112.9 11.1 65 195-259 68-133 (168)
124 1dce_A Protein (RAB geranylger 99.6 2.5E-17 8.5E-22 149.5 -2.5 201 46-253 347-567 (567)
125 1dce_A Protein (RAB geranylger 99.6 2.9E-17 1E-21 149.0 -2.3 203 93-326 346-563 (567)
126 4fs7_A Uncharacterized protein 99.6 1.2E-13 4.1E-18 120.3 18.5 288 12-319 59-388 (394)
127 1w8a_A SLIT protein; signaling 99.6 2.1E-14 7.3E-19 112.1 12.0 128 3-139 11-139 (192)
128 1w8a_A SLIT protein; signaling 99.6 3.3E-14 1.1E-18 111.1 12.4 132 129-263 11-143 (192)
129 2je0_A Acidic leucine-rich nuc 99.6 9.5E-15 3.3E-19 109.3 8.4 107 151-259 18-126 (149)
130 2wfh_A SLIT homolog 2 protein 99.5 8.7E-14 3E-18 108.7 13.0 125 4-138 14-138 (193)
131 4b8c_D Glucose-repressible alc 99.5 6.8E-15 2.3E-19 137.5 7.0 144 142-289 216-359 (727)
132 4fs7_A Uncharacterized protein 99.5 2.2E-13 7.5E-18 118.7 15.3 273 36-321 59-368 (394)
133 2o6r_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 105.9 12.2 132 177-312 10-141 (177)
134 2o6r_A Variable lymphocyte rec 99.5 2.6E-13 8.7E-18 104.6 13.5 131 129-262 10-140 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.5 5.1E-14 1.7E-18 108.4 9.3 135 19-162 14-152 (176)
136 4b8c_D Glucose-repressible alc 99.5 5.8E-15 2E-19 138.0 4.5 180 24-215 173-358 (727)
137 2wfh_A SLIT homolog 2 protein 99.5 3.1E-13 1.1E-17 105.5 13.0 126 130-259 14-139 (193)
138 1a9n_A U2A', U2A'; complex (nu 99.5 6.9E-14 2.4E-18 107.7 8.5 133 1-139 20-153 (176)
139 4gt6_A Cell surface protein; l 99.5 1.7E-11 5.9E-16 106.7 22.5 111 192-307 259-369 (394)
140 1ds9_A Outer arm dynein; leuci 99.4 2.9E-15 9.8E-20 117.8 -3.3 133 42-187 42-185 (198)
141 3g39_A Variable lymphocyte rec 99.4 2.7E-12 9.2E-17 98.0 10.8 105 2-109 11-115 (170)
142 1ds9_A Outer arm dynein; leuci 99.4 2.2E-14 7.5E-19 112.7 -1.7 133 44-187 14-153 (198)
143 2r9u_A Variable lymphocyte rec 99.4 4.9E-12 1.7E-16 96.9 10.9 104 3-109 15-118 (174)
144 4gt6_A Cell surface protein; l 99.3 1E-10 3.4E-15 101.9 19.3 286 2-307 66-390 (394)
145 2r9u_A Variable lymphocyte rec 99.3 9.5E-12 3.3E-16 95.3 11.0 104 201-308 15-118 (174)
146 3g39_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 94.8 11.1 105 200-308 11-115 (170)
147 3un9_A NLR family member X1; l 99.3 3.2E-14 1.1E-18 122.4 -3.9 185 125-309 71-284 (372)
148 3un9_A NLR family member X1; l 99.3 1.9E-13 6.6E-18 117.6 -1.5 186 47-234 71-282 (372)
149 4h09_A Hypothetical leucine ri 99.3 6E-10 2E-14 96.4 20.4 145 169-319 212-356 (379)
150 4h09_A Hypothetical leucine ri 99.1 1.1E-08 3.7E-13 88.5 20.6 282 20-321 42-335 (379)
151 2ifg_A High affinity nerve gro 99.1 4.4E-10 1.5E-14 96.1 9.9 104 4-110 12-117 (347)
152 2ra8_A Uncharacterized protein 99.1 1E-10 3.4E-15 99.9 5.5 182 121-306 134-341 (362)
153 2ra8_A Uncharacterized protein 99.0 1.9E-10 6.4E-15 98.2 5.4 186 92-282 135-341 (362)
154 2ifg_A High affinity nerve gro 99.0 1.9E-09 6.5E-14 92.1 9.5 89 194-284 27-116 (347)
155 3e4g_A ATP synthase subunit S, 98.9 3.2E-10 1.1E-14 85.5 3.3 105 222-327 61-171 (176)
156 3e4g_A ATP synthase subunit S, 98.7 6E-09 2.1E-13 78.5 2.9 85 23-107 60-150 (176)
157 1io0_A Tropomodulin; LRR prote 98.6 4.6E-09 1.6E-13 81.1 -0.2 89 220-308 63-164 (185)
158 1io0_A Tropomodulin; LRR prote 98.6 1.4E-08 4.8E-13 78.3 2.2 66 20-85 32-106 (185)
159 3rw6_A Nuclear RNA export fact 98.0 4.6E-06 1.6E-10 67.6 4.6 112 20-133 137-258 (267)
160 3rw6_A Nuclear RNA export fact 98.0 1.2E-05 4E-10 65.2 6.4 64 196-260 168-234 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 2.1E-05 7.3E-10 60.3 2.6 117 192-308 35-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 8.6E-05 3E-09 56.9 3.0 64 69-134 67-134 (197)
163 3rfe_A Platelet glycoprotein I 96.3 0.0082 2.8E-07 42.7 5.9 56 202-259 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.0 0.02 6.7E-07 40.7 6.6 36 49-84 32-67 (130)
165 2lz0_A Uncharacterized protein 87.4 2.1 7.1E-05 28.5 6.3 46 11-57 7-52 (100)
166 2lz0_A Uncharacterized protein 87.0 1.7 5.7E-05 29.0 5.6 46 35-81 7-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-37 Score=293.98 Aligned_cols=312 Identities=34% Similarity=0.476 Sum_probs=183.9
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCCh-hhhccCcCCCeeeccCCcccccccccccC---------
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIP-HEIGRLSSLNGLSLYSNFLKCSIPLSLGN--------- 70 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------- 70 (331)
+|++|++++|.+++..+..+.++++|++|++++|.+....+ ..+..+++|++|++++|.+...+|..+.+
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 36777777777776666667777777777777776653333 33666666666666666654444443333
Q ss_pred ------------------CCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEE
Q 045822 71 ------------------LTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQ 132 (331)
Q Consensus 71 ------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 132 (331)
+++|++|++++|.+....|..+..+++|++|++++|.+.. .+|..+..+++|+.|+
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG------TIPSSLGSLSKLRDLK 448 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES------CCCGGGGGCTTCCEEE
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC------cccHHHhcCCCCCEEE
Confidence 3445555555555554555556666666666666665442 3345566666666666
Q ss_pred ccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCC
Q 045822 133 LDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSG 212 (331)
Q Consensus 133 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 212 (331)
+++|.+.+..|..+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 66666655555556666666666666666665555566666666666666666655555566666666666666666655
Q ss_pred CCCccccccCCccEEEccCCccCccccc----------------------------------------------------
Q 045822 213 SIPLSFASLTSLTTLYLYENSLCDSIQK---------------------------------------------------- 240 (331)
Q Consensus 213 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------------------------------------------- 240 (331)
..|..+..+++|+.|++++|.+.+..+.
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 5555566666666666666554422111
Q ss_pred ------------------cccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEe
Q 045822 241 ------------------EIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLIL 302 (331)
Q Consensus 241 ------------------~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 302 (331)
.+..+++|+.|++++|.+++.+|..+..+.. |+.|++++|++++.+|..+.++++|+.|++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLRGLNILDL 687 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc-CCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence 1222345556666666666555555555443 666666666666566666666666666666
Q ss_pred ccceeccccChhhHHhh
Q 045822 303 TNNELSRQLSPELGSLI 319 (331)
Q Consensus 303 ~~~~~~~~~p~~~~~~~ 319 (331)
++|++++.+|..++.+.
T Consensus 688 s~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CSSCCEECCCGGGGGCC
T ss_pred CCCcccCcCChHHhCCC
Confidence 66666666666655544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.3e-38 Score=294.79 Aligned_cols=321 Identities=34% Similarity=0.502 Sum_probs=275.8
Q ss_pred CccEEecccccccCCCCcccCC-CCCccEEEeccCcccCCChhhhccCcCCCeeeccCCccccccccc-ccCCCcccEEE
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGH-LTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLS-LGNLTSLIYIG 78 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~ 78 (331)
+|++|++++|.+++..+..+.. +++|++|++++|.+....+..++.+++|++|++++|.+...+|.. +.++++|++|+
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 5899999999999788877766 499999999999999888999999999999999999998666655 89999999999
Q ss_pred eecceeeecCcccccCCC-CCCeEEeecCcccCC--C------------------CccCCchhhhhCCcCCcEEEccccc
Q 045822 79 ISNNLLFGLIPNEVGSLK-SLSDLRLYNNTLKNM--N------------------ALSGSIPDEIRNLKSLLNLQLDNNT 137 (331)
Q Consensus 79 l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~--~------------------~~~~~~~~~l~~~~~L~~L~l~~~~ 137 (331)
+++|.+....|..+..++ +|++|++++|.+... + .+++.+|..+..+++|+.|++++|.
T Consensus 350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE
T ss_pred CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc
Confidence 999999877777776665 677777766654310 0 0112456678888999999999998
Q ss_pred cCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCcc
Q 045822 138 LNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLS 217 (331)
Q Consensus 138 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 217 (331)
+.+..|..+..+++|+.+++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|.+
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 88888888888999999999999988888888899999999999999998778888999999999999999999889999
Q ss_pred ccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhc----------------------------
Q 045822 218 FASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNL---------------------------- 269 (331)
Q Consensus 218 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~---------------------------- 269 (331)
+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+...
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 9999999999999999988888889999999999999999987777654321
Q ss_pred -----------------------------------------cccccEEEcccccccccCCCCCCCCCcceEEEeccceec
Q 045822 270 -----------------------------------------TNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 270 -----------------------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 308 (331)
..+|+.|++++|++.+.+|..+..++.|+.|++++|+++
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence 135889999999999999999999999999999999999
Q ss_pred cccChhhHHhhhh
Q 045822 309 RQLSPELGSLIMA 321 (331)
Q Consensus 309 ~~~p~~~~~~~~~ 321 (331)
+.+|..++.+..+
T Consensus 670 g~ip~~l~~L~~L 682 (768)
T 3rgz_A 670 GSIPDEVGDLRGL 682 (768)
T ss_dssp SCCCGGGGGCTTC
T ss_pred CCCChHHhCCCCC
Confidence 9999999887654
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.8e-37 Score=273.98 Aligned_cols=305 Identities=23% Similarity=0.239 Sum_probs=246.5
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCccc-CCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEe
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLS-GLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGI 79 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (331)
+|++|++++|.+++..+..+.++++|++|++++|.+. .+.+..|.++++|++|++++|.+....+..+.++++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 5899999999999888889999999999999999886 455778899999999999999998777889999999999999
Q ss_pred ecceeeecCccc--ccCCCCCCeEEeecCcccCCCCccCCchh-hhhCCcCCcEEEccccccCCcccccccCC-------
Q 045822 80 SNNLLFGLIPNE--VGSLKSLSDLRLYNNTLKNMNALSGSIPD-EIRNLKSLLNLQLDNNTLNGSIPLSLGNL------- 149 (331)
Q Consensus 80 ~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~------- 149 (331)
++|.+....+.. +..+++|++|++++|.+.... |. .+..+++|++|++++|.+.+..+..+..+
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ------PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC------CCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccC------cccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 999987644443 888999999999999887532 33 37889999999999998876655544432
Q ss_pred ---------------------------CCCcEEEeecccCCCccccccc-------------------------------
Q 045822 150 ---------------------------TNLTTLYFSTNALSGSISNEIT------------------------------- 171 (331)
Q Consensus 150 ---------------------------~~L~~l~l~~~~~~~~~~~~l~------------------------------- 171 (331)
++|+.+++++|.+....+..+.
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 5677777777765432222111
Q ss_pred --------CCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcccccccc
Q 045822 172 --------NLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIG 243 (331)
Q Consensus 172 --------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 243 (331)
..++|+++++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence 125788888888887766677788888999999999988877777888889999999999988777777888
Q ss_pred CCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccC
Q 045822 244 DMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLS 312 (331)
Q Consensus 244 ~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 312 (331)
.+++|+.|++++|.+.+..+..+.... +|++|++++|++.+..+..+..+++|+.|++++|+++...|
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CcccCCEEECCCCcccccChhhccccc-cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 889999999999998866566666655 49999999999886666677888999999999999987777
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=269.55 Aligned_cols=302 Identities=22% Similarity=0.222 Sum_probs=264.4
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
++++|+|++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 47899999999998888899999999999999999998888999999999999999999986556678899999999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecc
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTN 160 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 160 (331)
+|.+....+..+..+++|++|++++|.+..+. +..+..+++|+.|++++|.+....+..+..+++|+.+++++|
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS------HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEEC------TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeC------hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 99998888888999999999999999877532 356888999999999999998766677889999999999999
Q ss_pred cCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccc
Q 045822 161 ALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQK 240 (331)
Q Consensus 161 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 240 (331)
.+.......+..+++|++|++++|......+.......+|++|++++|.+....+..+..+++|+.|++++|.+.+....
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 99877777889999999999999877655555555566999999999999855556788999999999999999888788
Q ss_pred cccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceecc
Q 045822 241 EIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSR 309 (331)
Q Consensus 241 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 309 (331)
.+..+++|+.|++++|.+.+..+..+..+. +|+.|++++|++.+..+..+..+++|+.|++++|++..
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLN-YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCT-TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred hccccccCCEEECCCCccceECHHHhcCcc-cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 889999999999999999966666666655 49999999999987666778999999999999999873
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-35 Score=272.48 Aligned_cols=306 Identities=22% Similarity=0.200 Sum_probs=208.6
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
++++|++++|.+++..+..|.++++|++|++++|.+..+.+.+|.++++|++|++++|.+....+..+.++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 47889999999987778888999999999999998888888888889999999999998886777888889999999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCc--EEEee
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLT--TLYFS 158 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~l~l~ 158 (331)
+|.+....+..+..+++|++|++++|.+..++. ..+..+++|+.|++++|.+....+..+..+++|+ .++++
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKL------PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC------CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCc------ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 888877666778888888888888888775421 2223366666666666666544444455555555 44444
Q ss_pred cccC---------------------------------------------------------------------------C
Q 045822 159 TNAL---------------------------------------------------------------------------S 163 (331)
Q Consensus 159 ~~~~---------------------------------------------------------------------------~ 163 (331)
+|.+ .
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 4443 3
Q ss_pred CcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcc-ccccc
Q 045822 164 GSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDS-IQKEI 242 (331)
Q Consensus 164 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~ 242 (331)
...+..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+... ....+
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 333333555566666666666655 3444455666666666666666654455566666666666666665532 23345
Q ss_pred cCCCcccEEEccCCcccccc--chhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChh
Q 045822 243 GDMKSLSILDLSSNKLNGSI--PLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPE 314 (331)
Q Consensus 243 ~~~~~L~~L~ls~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~ 314 (331)
..+++|+.|++++|.+.+.. +..+.... +|+.|++++|++.+..+..+..+++|++|++++|++++..|..
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCT-TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred hccCcCCEEECCCCccccccCcchhcccCC-CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 66677777777777666433 33343443 4777777777776666667777777777777777776665543
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.7e-35 Score=270.16 Aligned_cols=108 Identities=22% Similarity=0.313 Sum_probs=51.1
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
|++|++++|.+++..+..|.++++|++|++++|.+....|..|+++++|++|++++|.+....+..+.++++|++|++++
T Consensus 58 L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 137 (606)
T 3vq2_A 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS
T ss_pred CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC
Confidence 44444444444444444444444444444444444444444444444444444444444433333444455555555555
Q ss_pred ceeee-cCcccccCCCCCCeEEeecCccc
Q 045822 82 NLLFG-LIPNEVGSLKSLSDLRLYNNTLK 109 (331)
Q Consensus 82 ~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 109 (331)
|.+.. ..|..+.++++|++|++++|.+.
T Consensus 138 n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp SCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CcccceechHhHhhcCCCCEEEccCCcce
Confidence 54433 22444555555555555555443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.9e-34 Score=264.90 Aligned_cols=302 Identities=20% Similarity=0.201 Sum_probs=178.9
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|++|++++|.+.+..+..|.++++|++|++++|.+....+..++++++|++|++++|.+....+..+.++++|++|+++
T Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~ 137 (606)
T 3t6q_A 58 NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137 (606)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECC
T ss_pred cceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECC
Confidence 57888999888887778888889999999998888887777888888888888888888875556677778888888888
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCc--EEE--------------------------
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLL--NLQ-------------------------- 132 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~--~L~-------------------------- 132 (331)
+|.+.......+..+++|++|++++|.+.... +..+..+++|+ .++
T Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 211 (606)
T 3t6q_A 138 SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS------KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211 (606)
T ss_dssp SSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC------HHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred CCcccccCcccccCCcccCEEEcccCcccccC------hhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence 87776543334444677777777766554321 12233333333 222
Q ss_pred -------------------------------------------------ccccccCCcccccccCCCCCcEEEeecccCC
Q 045822 133 -------------------------------------------------LDNNTLNGSIPLSLGNLTNLTTLYFSTNALS 163 (331)
Q Consensus 133 -------------------------------------------------l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 163 (331)
+.++.+.+..+..|..+++|+++++++|.++
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 2222222222233444555666666665555
Q ss_pred CcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecC-------------------------cCCCCC--Cc
Q 045822 164 GSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSIN-------------------------KLSGSI--PL 216 (331)
Q Consensus 164 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------------------~~~~~~--~~ 216 (331)
..+..+..+++|++|++++|.+....+..+..+++|++|++++| .+.... +.
T Consensus 292 -~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp -CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred -CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 34444555555566666555554433444444555555555554 444222 33
Q ss_pred cccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCc
Q 045822 217 SFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSS 296 (331)
Q Consensus 217 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 296 (331)
.+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+.......++|+.|++++|.+.+..+..+..+++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 44445555555555555544444445555555555555555554433332222234666666666665555556666666
Q ss_pred ceEEEeccceecc
Q 045822 297 LIQLILTNNELSR 309 (331)
Q Consensus 297 L~~L~l~~~~~~~ 309 (331)
|++|++++|++++
T Consensus 451 L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 451 LQHLNLQGNHFPK 463 (606)
T ss_dssp CCEEECTTCBCGG
T ss_pred CCEEECCCCCCCc
Confidence 6666666666654
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=257.32 Aligned_cols=308 Identities=20% Similarity=0.229 Sum_probs=263.8
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecc
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNN 82 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (331)
+.++.++..++ .+|..+. +++++|++++|.+....+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45666677776 4454443 58999999999999888889999999999999999999777889999999999999999
Q ss_pred eeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccC
Q 045822 83 LLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNAL 162 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 162 (331)
.+....+..|.++++|++|++++|.+... .+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVIL------LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred cCCccCcccccCCCCCCEEECCCCccccC------ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 99877777789999999999999988753 346788999999999999999877788899999999999999999
Q ss_pred CCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccc
Q 045822 163 SGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEI 242 (331)
Q Consensus 163 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 242 (331)
+......+..+++|+.|++.+|.+....+..+..+++|++|++++|...+..+.......+|++|++++|.+.+.....+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 87777789999999999999999887777788999999999999988776666555556699999999999987776788
Q ss_pred cCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHhhh
Q 045822 243 GDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSLIM 320 (331)
Q Consensus 243 ~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~~ 320 (331)
..+++|+.|++++|.+.+..+..+.... +|+.|++++|++.+..+..+..+++|+.|++++|++++..+..|..+..
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCT-TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred cCccccCeeECCCCcCCccChhhccccc-cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 8999999999999999854444454544 5999999999999888999999999999999999999655555555433
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-34 Score=267.25 Aligned_cols=147 Identities=26% Similarity=0.255 Sum_probs=84.1
Q ss_pred ccCCCCCCEEEccCCcCCCCcc-hhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCc-cccccccCCCc
Q 045822 170 ITNLRSISDLQLSENTLDGSIP-LALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCD-SIQKEIGDMKS 247 (331)
Q Consensus 170 l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 247 (331)
+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..+..+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 3444445555555544433332 345555566666666666555555555666666666666666654 24455556666
Q ss_pred ccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHh
Q 045822 248 LSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSL 318 (331)
Q Consensus 248 L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~ 318 (331)
|+.|++++|.+++..+..+..+. +|+.|++++|++.+..+..+..+++|++|++++|+++ .+|..+..+
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l 543 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF 543 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred CCEEECCCCcCCccChhhhcccc-cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence 66666666666644444444443 3666666666666555666666666666666666666 455555544
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-34 Score=267.88 Aligned_cols=302 Identities=23% Similarity=0.279 Sum_probs=253.5
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCc-ccC-CChhhhccC------cCCCeeeccCCcccccccc--cccC
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQ-LSG-LIPHEIGRL------SSLNGLSLYSNFLKCSIPL--SLGN 70 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~ 70 (331)
+|++|++++|.+.+..|..+.++++|++|++++|+ +.. ..|..+..+ ++|++|++++|.+. .+|. .+.+
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~ 328 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK 328 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence 58999999999998999999999999999999998 876 677777765 99999999999998 7888 8999
Q ss_pred CCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcC-CcEEEccccccCCcccccccCC
Q 045822 71 LTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKS-LLNLQLDNNTLNGSIPLSLGNL 149 (331)
Q Consensus 71 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~ 149 (331)
+++|++|++++|.+....| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+...
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~ 399 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-------EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAK 399 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-------ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTT
T ss_pred CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-------cccHhhhhhcccCcEEEccCCcCc-ccchhhhhc
Confidence 9999999999999986667 7889999999999999887 34567888899 999999999988 667666654
Q ss_pred C--CCcEEEeecccCCCccccccc-------CCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccc
Q 045822 150 T--NLTTLYFSTNALSGSISNEIT-------NLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFAS 220 (331)
Q Consensus 150 ~--~L~~l~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 220 (331)
+ +|+.+++++|.+....+..+. .+++|++|++++|.+.......+..+++|++|++++|.+....+..+..
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 479 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc
Confidence 4 899999999999877777777 7789999999999988666666777899999999999988333333333
Q ss_pred c-------CCccEEEccCCccCcccccccc--CCCcccEEEccCCccccccchhhhhccccccEEEc------ccccccc
Q 045822 221 L-------TSLTTLYLYENSLCDSIQKEIG--DMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSL------SSNNIVG 285 (331)
Q Consensus 221 ~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~ 285 (331)
. ++|++|++++|.+.. .+..+. .+++|+.|++++|.+.+ +|..+..+.. |+.|++ ++|++.+
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~-L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST-LKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS-CCEEECCSCBCTTCCBCCC
T ss_pred ccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC-CCEEECCCCcccccCcccc
Confidence 3 389999999999874 445554 88999999999999985 7777776654 999999 4567777
Q ss_pred cCCCCCCCCCcceEEEeccceeccccChhhH
Q 045822 286 EIPLGHGKFSSLIQLILTNNELSRQLSPELG 316 (331)
Q Consensus 286 ~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~ 316 (331)
.+|..+..+++|++|++++|++ +.+|..+.
T Consensus 557 ~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 557 EWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred cChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 8888999999999999999999 57888765
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-34 Score=256.86 Aligned_cols=306 Identities=23% Similarity=0.226 Sum_probs=248.5
Q ss_pred EEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCccccc-ccccccCCCcccEEEeecc
Q 045822 4 FLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCS-IPLSLGNLTSLIYIGISNN 82 (331)
Q Consensus 4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~ 82 (331)
.++.+++.++ .+|. +. ++|++|++++|.+....+..+.++++|++|++++|.+... .+..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4566666666 3444 22 7899999999999988889999999999999999988633 4667999999999999999
Q ss_pred eeeecCcccccCCCCCCeEEeecCcccCCCCccCCchh--hhhCCcCCcEEEccccccCCccccc-ccCCCCCcEEEeec
Q 045822 83 LLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPD--EIRNLKSLLNLQLDNNTLNGSIPLS-LGNLTNLTTLYFST 159 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~l~l~~ 159 (331)
.+....+..+.++++|++|++++|.+.. ..+. .+..+++|++|++++|.+.+..+.. +..+++|+++++++
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDG------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBT------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCc------cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 9988888899999999999999998763 1223 3888999999999999998776665 78899999999999
Q ss_pred ccCCCcccccccC----------------------------------CCCCCEEEccCCcCCCCcchhhh----------
Q 045822 160 NALSGSISNEITN----------------------------------LRSISDLQLSENTLDGSIPLALG---------- 195 (331)
Q Consensus 160 ~~~~~~~~~~l~~----------------------------------~~~L~~L~l~~~~~~~~~~~~~~---------- 195 (331)
|.+....+..+.. +++|++|++++|.+....+..+.
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 9887655544433 35688888888866533222221
Q ss_pred -----------------------------CCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCC
Q 045822 196 -----------------------------NLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMK 246 (331)
Q Consensus 196 -----------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 246 (331)
..++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence 125788899999888877788889999999999999999888788889999
Q ss_pred cccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHhhh
Q 045822 247 SLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSLIM 320 (331)
Q Consensus 247 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~~ 320 (331)
+|+.|++++|.+.+..+..+.... +|+.|++++|++.+..+..+..+++|++|++++|++++..+..+..+..
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLD-KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cCCEEECCCCccCCcChhHhcCcc-cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc
Confidence 999999999999855555555555 5999999999999888899999999999999999999655555555443
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.7e-35 Score=268.49 Aligned_cols=309 Identities=20% Similarity=0.208 Sum_probs=263.7
Q ss_pred CccEEecccccccCC-----------------CCcccC--CCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCc-c
Q 045822 1 MLKFLGLSFNQFYGS-----------------IPPEIG--HLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNF-L 60 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~ 60 (331)
+|++|+|++|.+++. .|..+. ++++|++|++++|.+....|..+.++++|++|++++|. +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 589999999999974 888888 99999999999999988889999999999999999998 8
Q ss_pred cc-cccccccCC------CcccEEEeecceeeecCcc--cccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEE
Q 045822 61 KC-SIPLSLGNL------TSLIYIGISNNLLFGLIPN--EVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNL 131 (331)
Q Consensus 61 ~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 131 (331)
+. .+|..+.++ ++|++|++++|.+. ..|. .+..+++|++|++++|.+.. .+| .+..+++|+.|
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g------~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG------KLP-AFGSEIKLASL 358 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE------ECC-CCEEEEEESEE
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc------chh-hhCCCCCCCEE
Confidence 76 678777765 99999999999998 6677 89999999999999998762 445 67888999999
Q ss_pred EccccccCCcccccccCCCC-CcEEEeecccCCCcccccccCCC--CCCEEEccCCcCCCCcchhhh-------CCCCcc
Q 045822 132 QLDNNTLNGSIPLSLGNLTN-LTTLYFSTNALSGSISNEITNLR--SISDLQLSENTLDGSIPLALG-------NLIKLV 201 (331)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~ 201 (331)
++++|.+. .+|..+..+++ |+.+++++|.+. .++..+...+ +|++|++++|.+....+..+. .+++|+
T Consensus 359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred ECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 99999998 77777888898 999999999998 5666666654 899999999999877777776 778999
Q ss_pred EEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCC-------CcccEEEccCCccccccchhhh-hccccc
Q 045822 202 VLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDM-------KSLSILDLSSNKLNGSIPLSLT-NLTNSL 273 (331)
Q Consensus 202 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~ls~~~~~~~~~~~~~-~~~~~L 273 (331)
+|++++|.+....+..+..+++|++|++++|.+.......+... ++|+.|++++|.+. .++..+. ...++|
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 515 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL 515 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence 99999999995444556678999999999999985544444333 39999999999999 7877776 233459
Q ss_pred cEEEcccccccccCCCCCCCCCcceEEEe------ccceeccccChhhHHhhhh
Q 045822 274 KVLSLSSNNIVGEIPLGHGKFSSLIQLIL------TNNELSRQLSPELGSLIMA 321 (331)
Q Consensus 274 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~p~~~~~~~~~ 321 (331)
+.|++++|++.+ +|..+..+++|+.|++ ++|++.+.+|..+..+..+
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 999999999996 8899999999999999 5678888999999876543
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=262.60 Aligned_cols=121 Identities=24% Similarity=0.270 Sum_probs=56.9
Q ss_pred CCCccEEEeecCcCCCCCC-ccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccc-cccchhhhhcccccc
Q 045822 197 LIKLVVLDLSINKLSGSIP-LSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN-GSIPLSLTNLTNSLK 274 (331)
Q Consensus 197 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~-~~~~~~~~~~~~~L~ 274 (331)
+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.++..+..+. +|+
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-~L~ 473 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLT 473 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCC
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc-CCC
Confidence 3334444444443332222 23444455555555555544444444445555555555555554 22333333333 355
Q ss_pred EEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHh
Q 045822 275 VLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSL 318 (331)
Q Consensus 275 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~ 318 (331)
.|++++|++.+..+..+..+++|++|++++|++++..|..+.++
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 55555555554445555555555555555555554444444433
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.6e-34 Score=256.77 Aligned_cols=106 Identities=25% Similarity=0.213 Sum_probs=83.0
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|++|++++|.+++..+..+.++++|++|++++|.+....+..|.++++|++|++++|.+. .+|.. .+++|++|+++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEecc
Confidence 4778888888888666677888888888888888888777778888888888888888887 45544 77888888888
Q ss_pred cceeeec-CcccccCCCCCCeEEeecCccc
Q 045822 81 NNLLFGL-IPNEVGSLKSLSDLRLYNNTLK 109 (331)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 109 (331)
+|.+... .|..+.++++|++|++++|.+.
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred CCccccccchhhhccCCcceEEEecCcccc
Confidence 8887653 4677888888888888887665
No 15
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-33 Score=255.48 Aligned_cols=301 Identities=27% Similarity=0.284 Sum_probs=201.1
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|++|++++|.+++..+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+. .+|.. .+++|++|+++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence 4788899988888777778888999999999998888777888888889999999998887 45555 78888999998
Q ss_pred cceeeecC-cccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCC--cEEEcccccc--CCcccccccCC------
Q 045822 81 NNLLFGLI-PNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSL--LNLQLDNNTL--NGSIPLSLGNL------ 149 (331)
Q Consensus 81 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~~~~------ 149 (331)
+|.+.... |..+.++++|++|++++|.+... .+..+++| +.|++++|.+ ....+..+..+
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~ 200 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---------DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---------TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEE
T ss_pred CCCccccCchHhhcccCcccEEecCCCccccC---------chhhhhhceeeEEEeecccccccccCcccccccCcceEE
Confidence 88887643 46788888899998888877632 12222333 5555555544 22222222111
Q ss_pred ---------------------------------------------------------------------------CCCcE
Q 045822 150 ---------------------------------------------------------------------------TNLTT 154 (331)
Q Consensus 150 ---------------------------------------------------------------------------~~L~~ 154 (331)
++|++
T Consensus 201 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280 (562)
T ss_dssp EEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred EEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence 13444
Q ss_pred EEeecccCCCcccccc-----------------------------------------------------cCCCCCCEEEc
Q 045822 155 LYFSTNALSGSISNEI-----------------------------------------------------TNLRSISDLQL 181 (331)
Q Consensus 155 l~l~~~~~~~~~~~~l-----------------------------------------------------~~~~~L~~L~l 181 (331)
+++++|.+.+..+..+ ..+++|++|++
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 360 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEEC
Confidence 4444444432222211 45567777777
Q ss_pred cCCcCCCCcchhhhCCCCccEEEeecCcCCCC--CCccccccCCccEEEccCCccCc-cccccccCCCcccEEEccCCcc
Q 045822 182 SENTLDGSIPLALGNLIKLVVLDLSINKLSGS--IPLSFASLTSLTTLYLYENSLCD-SIQKEIGDMKSLSILDLSSNKL 258 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~ 258 (331)
++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+ .....+..+++|+.|++++|.+
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 77777665666677777777777777777642 23456677777777777777766 4444566677777777777777
Q ss_pred ccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChh-hHHh
Q 045822 259 NGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPE-LGSL 318 (331)
Q Consensus 259 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~~ 318 (331)
++..+..+. ++|+.|++++|++. .+|..+..+++|++|++++|+++ .+|.. +..+
T Consensus 441 ~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 496 (562)
T 3a79_B 441 TGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL 496 (562)
T ss_dssp CGGGGSSCC---TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred Ccchhhhhc---CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence 654443322 34777777777776 56655557777888888887777 55555 4443
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=255.49 Aligned_cols=143 Identities=23% Similarity=0.298 Sum_probs=120.0
Q ss_pred ccCCCCCCEEEccCCcCCCCcc-hhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccC-ccccccccCCCc
Q 045822 170 ITNLRSISDLQLSENTLDGSIP-LALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLC-DSIQKEIGDMKS 247 (331)
Q Consensus 170 l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~ 247 (331)
+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+. +..+..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 4556666666666666544333 46788999999999999998778888999999999999999987 356678889999
Q ss_pred ccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccCh
Q 045822 248 LSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSP 313 (331)
Q Consensus 248 L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~ 313 (331)
|+.|++++|.+++..+..+..+. +|+.|++++|++.+..+..+..+++|+.|++++|+++...|.
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCccccCChhhhhccc-CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999966676666665 499999999999987778899999999999999999988775
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-32 Score=255.68 Aligned_cols=314 Identities=25% Similarity=0.279 Sum_probs=215.8
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccc-----ccc----ccccCCC
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKC-----SIP----LSLGNLT 72 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~----~~~~~l~ 72 (331)
|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|+++++.... .+| ..+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 6777777777766666667777777777777777766666667777777777776543221 111 2566777
Q ss_pred cccEEEeecceeeecCcccccCCCCCCeEEeecCcccC--CC--------------------CccCCchhhhhCCcCCcE
Q 045822 73 SLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKN--MN--------------------ALSGSIPDEIRNLKSLLN 130 (331)
Q Consensus 73 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~--------------------~~~~~~~~~l~~~~~L~~ 130 (331)
+|++|++++|.+....+..+..+++|++|++++|.+.. ++ .+.+..+..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 88888888887777666777778888888877664221 00 011122344556666666
Q ss_pred EEccccccCCccc-ccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCC--CCcchhhhCCCCccEEEeec
Q 045822 131 LQLDNNTLNGSIP-LSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLD--GSIPLALGNLIKLVVLDLSI 207 (331)
Q Consensus 131 L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~ 207 (331)
|++++|.+.+..+ ..+..+++|+++++++|.+....+..+..++.|++|++.+|.+. +..+..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 6666666654333 45566666777777666665555556666777777777776653 34556677888888888888
Q ss_pred CcCCCCCCccccccCCccEEEccCCccCcccc--------ccccCCCcccEEEccCCccccccchhhhhccccccEEEcc
Q 045822 208 NKLSGSIPLSFASLTSLTTLYLYENSLCDSIQ--------KEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLS 279 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~ 279 (331)
|.+....+..+..+++|++|++++|.+.+... ..+..+++|+.|++++|.+. .++.......++|+.|+++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECC
Confidence 88886666778888888899998888765322 23667888999999998888 5665444444459999999
Q ss_pred cccccccCCCCCCCCCcceEEEeccceeccccChhhH
Q 045822 280 SNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELG 316 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~ 316 (331)
+|++.+..+..+..+++|+.|++++|++++..|..+.
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 9998866666788889999999999999866666555
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.8e-32 Score=233.81 Aligned_cols=284 Identities=25% Similarity=0.350 Sum_probs=231.4
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|++|+++++.+.. .+ .+..+++|++|++++|.+....+ +..+++|++|++++|.+.. + ..+.++++|++|+++
T Consensus 45 ~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECT
T ss_pred cccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECc
Confidence 47899999999884 33 38899999999999999886543 8899999999999998873 3 468899999999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecc
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTN 160 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 160 (331)
+|.+....+ +..+++|+++++++|.... . ...+..+++|+.|+++++.+.+..+ +..+++|+.+++++|
T Consensus 119 ~n~i~~~~~--~~~l~~L~~L~l~~n~~~~------~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 119 EDNISDISP--LANLTKMYSLNLGANHNLS------D-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECTTCTTCC------C-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CCcccCchh--hccCCceeEEECCCCCCcc------c-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999875533 8889999999999985432 1 2448889999999999998875443 778899999999999
Q ss_pred cCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccc
Q 045822 161 ALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQK 240 (331)
Q Consensus 161 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 240 (331)
.+..... +..+++|+.+++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. .
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 259 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N 259 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h
Confidence 8875433 7788999999999998875443 7788999999999999885433 77889999999999988764 4
Q ss_pred cccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccC
Q 045822 241 EIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLS 312 (331)
Q Consensus 241 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 312 (331)
.+..+++|+.|++++|.+.+. ..+... ++|+.|++++|++.+..+..+..+++|++|++++|++++..|
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI--SVLNNL-SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred hHhcCCCcCEEEccCCccCCC--hhhcCC-CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 577889999999999988743 334444 459999999999987777888889999999999999986655
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.8e-33 Score=262.74 Aligned_cols=300 Identities=23% Similarity=0.264 Sum_probs=201.1
Q ss_pred CccEEecccccccC-----------------CCCcccC--CCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCc-c
Q 045822 1 MLKFLGLSFNQFYG-----------------SIPPEIG--HLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNF-L 60 (331)
Q Consensus 1 ~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~ 60 (331)
+|++|+|++|.+++ .+|..+. ++++|++|++++|.+....|..+.++++|++|++++|. +
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 47888888888886 2677766 88888888888888777778888888888888888887 6
Q ss_pred cc-cccccccC-------CCcccEEEeecceeeecCcc--cccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcE
Q 045822 61 KC-SIPLSLGN-------LTSLIYIGISNNLLFGLIPN--EVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLN 130 (331)
Q Consensus 61 ~~-~~~~~~~~-------l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 130 (331)
.. .+|..+.+ +++|++|++++|.+. ..|. .+.++++|++|++++|.+..+ | .+..+++|+.
T Consensus 529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l-------p-~~~~L~~L~~ 599 (876)
T 4ecn_A 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHL-------E-AFGTNVKLTD 599 (876)
T ss_dssp CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBC-------C-CCCTTSEESE
T ss_pred ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccc-------h-hhcCCCcceE
Confidence 64 45554443 347888888888777 4555 677778888888877776632 2 4455555666
Q ss_pred EEccccccCCcccccccCCCC-CcEEEeecccCCCcccccccC-------------------------------CCCCCE
Q 045822 131 LQLDNNTLNGSIPLSLGNLTN-LTTLYFSTNALSGSISNEITN-------------------------------LRSISD 178 (331)
Q Consensus 131 L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~l~~-------------------------------~~~L~~ 178 (331)
|++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+.. .++|+.
T Consensus 600 L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp EECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred EECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 666665555 44444555555 555555555544 22222222 235666
Q ss_pred EEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCcc-cc-------ccCCccEEEccCCccCcccccccc--CCCcc
Q 045822 179 LQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLS-FA-------SLTSLTTLYLYENSLCDSIQKEIG--DMKSL 248 (331)
Q Consensus 179 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L 248 (331)
|++++|.+.......+..+++|+.|++++|.+. ..|.. +. .+++|++|++++|.+.. .+..+. .+++|
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L 755 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYL 755 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTC
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhccCCCc
Confidence 666666665433344456777888888888777 33332 22 22378888888887763 444444 77888
Q ss_pred cEEEccCCccccccchhhhhccccccEEEccc------ccccccCCCCCCCCCcceEEEeccceeccccChhhH
Q 045822 249 SILDLSSNKLNGSIPLSLTNLTNSLKVLSLSS------NNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELG 316 (331)
Q Consensus 249 ~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~ 316 (331)
+.|++++|.+.+ ++..+..+. +|+.|++++ |.+.+.+|..+.++++|+.|++++|++ +.+|..+.
T Consensus 756 ~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 756 SNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CEEECCSSCCSS-CCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred CEEEeCCCCCCc-cchhhhcCC-CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 888888888874 666666554 488888865 666667777888888888888888888 57777654
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.8e-33 Score=264.15 Aligned_cols=302 Identities=21% Similarity=0.199 Sum_probs=220.5
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCccc-CCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEe
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLS-GLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGI 79 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (331)
++++|+|++|.+++..+..|.++++|++|++++|... .+.+.+|.++++|++|++++|.+....|..|.++++|++|++
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 104 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence 4789999999999888889999999999999999543 455788999999999999999998777899999999999999
Q ss_pred ecceeeecCccc--ccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCC--CCCcEE
Q 045822 80 SNNLLFGLIPNE--VGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNL--TNLTTL 155 (331)
Q Consensus 80 ~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~l 155 (331)
++|.+....+.. +.++++|++|++++|.+... ..+..++.+++|++|++++|.+....+..+..+ ++|+.+
T Consensus 105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-----~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-----YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-----CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred cCCCCCcccccCccccccCCCCEEECCCCccccc-----ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 999987644443 88999999999999988753 223578999999999999998887766666655 677888
Q ss_pred EeecccCCCcccccccCCCC------CCEEEccCCcCCCCcchh------------------------------------
Q 045822 156 YFSTNALSGSISNEITNLRS------ISDLQLSENTLDGSIPLA------------------------------------ 193 (331)
Q Consensus 156 ~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~------------------------------------ 193 (331)
++++|.+....+..+..+++ |++|++++|.+....+..
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 88777776555544444443 777777766443221111
Q ss_pred hhC--CCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccc
Q 045822 194 LGN--LIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTN 271 (331)
Q Consensus 194 ~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~ 271 (331)
+.. .++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+....
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~- 338 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP- 338 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT-
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC-
Confidence 111 24577777777776655566666777777777777777666566666677777777777776644444444444
Q ss_pred cccEEEcccccccccCCCCCCCCCcceEEEeccceec
Q 045822 272 SLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 272 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 308 (331)
+|+.|++++|.+....+..+..+++|+.|++++|.++
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 3777777777766555556666777777777777665
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.3e-32 Score=234.25 Aligned_cols=280 Identities=24% Similarity=0.354 Sum_probs=223.0
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|++|++++|.+++..+ +..+++|++|++++|.+... ..+..+++|++|++++|.+... +. +..+++|++|+++
T Consensus 67 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLG 140 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECT
T ss_pred CccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECC
Confidence 58899999998884433 88999999999999988754 4588899999999999988733 33 7889999999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecc
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTN 160 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 160 (331)
+|...... ..+..+++|++|+++++.+...+ .+..+++|+.|++++|.+.+..+ +..+++|+.+++++|
T Consensus 141 ~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 141 ANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--------PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209 (347)
T ss_dssp TCTTCCCC-GGGTTCTTCCEEECCSSCCCCCG--------GGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred CCCCcccc-cchhhCCCCcEEEecCCCcCCch--------hhccCCCCCEEEccCCccccccc--ccCCCccceeecccC
Confidence 98654443 34888999999999998877432 27788999999999998875433 778889999999998
Q ss_pred cCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccc
Q 045822 161 ALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQK 240 (331)
Q Consensus 161 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 240 (331)
.+..... +..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..+++|++|++++|.+.+. .
T Consensus 210 ~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~ 281 (347)
T 4fmz_A 210 QITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--S 281 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--G
T ss_pred CCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--h
Confidence 8875433 7788899999999998875443 78889999999999988753 4677889999999999988764 4
Q ss_pred cccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceec
Q 045822 241 EIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 241 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 308 (331)
.+..+++|+.|++++|.+.+..+..+..+. +|+.|++++|++.+..+ +..+++|++|++++|+++
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGGHHHHHTCT-TCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhcCCCCCCEEECcCCcCCCcChhHhhccc-cCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 577889999999999999866666666655 49999999999886544 788899999999999886
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-32 Score=239.18 Aligned_cols=293 Identities=22% Similarity=0.226 Sum_probs=206.5
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
++++|+++++.++...+..+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 35667777776665555556667777777777777666666666677777777777777665555566677777777777
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccc--------------
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSL-------------- 146 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-------------- 146 (331)
+|.+....+..+..+++|++|++++|.+..++ +..+..+++|+.|++++|.+.......+
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE------DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC------TTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccC------hhhccCCCCCCEEECCCCcCCccccccccccceeeccccccc
Confidence 77766554444566777777777777665422 2446666777777777766653321111
Q ss_pred --cCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCc
Q 045822 147 --GNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSL 224 (331)
Q Consensus 147 --~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 224 (331)
...++|+.+++++|.+... +. ...++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred ccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 1223455555555555422 11 2246789999999888743 567889999999999999987778889999999
Q ss_pred cEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEecc
Q 045822 225 TTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTN 304 (331)
Q Consensus 225 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 304 (331)
++|++++|.+.+. +..+..+++|+.|++++|.+. .++..+.... +|+.|++++|++.+. .+..+++|+.|++++
T Consensus 275 ~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~-~L~~L~L~~N~i~~~---~~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 275 ERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLYLDHNSIVTL---KLSTHHTLKNLTLSH 348 (390)
T ss_dssp CEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSEEECCSSCCCCC---CCCTTCCCSEEECCS
T ss_pred CEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccC-cCCEEECCCCcccee---CchhhccCCEEEcCC
Confidence 9999999998664 344567899999999999988 6666666655 499999999999743 367788999999999
Q ss_pred ceeccc
Q 045822 305 NELSRQ 310 (331)
Q Consensus 305 ~~~~~~ 310 (331)
|++...
T Consensus 349 N~~~~~ 354 (390)
T 3o6n_A 349 NDWDCN 354 (390)
T ss_dssp SCEEHH
T ss_pred CCccch
Confidence 999743
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=248.24 Aligned_cols=126 Identities=24% Similarity=0.266 Sum_probs=108.5
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecc
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNN 82 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (331)
++|+++++.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 68999999999 4555555 89999999999999888899999999999999999999777889999999999999999
Q ss_pred eeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccC
Q 045822 83 LLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLN 139 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 139 (331)
.+... |.. .+++|++|++++|.+..+ .+|..++.+++|++|++++|.+.
T Consensus 80 ~l~~l-p~~--~l~~L~~L~L~~N~l~~~-----~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 80 KLVKI-SCH--PTVNLKHLDLSFNAFDAL-----PICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCCEE-ECC--CCCCCSEEECCSSCCSSC-----CCCGGGGGCTTCCEEEEEESSCC
T ss_pred ceeec-Ccc--ccCCccEEeccCCccccc-----cchhhhccCCcceEEEecCcccc
Confidence 98854 443 799999999999988753 24567888888888888887764
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.2e-32 Score=254.52 Aligned_cols=319 Identities=23% Similarity=0.211 Sum_probs=158.6
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
|++|++++|.+++..+..+.++++|++|++++|.+....+..|+++++|++|++++|.+....+..+.++++|++|++++
T Consensus 51 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 130 (680)
T 1ziw_A 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130 (680)
T ss_dssp CSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS
T ss_pred CcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC
Confidence 55556655555555555555555555555555555544444455555555555555555433344555555555555555
Q ss_pred ceeeecCcccccCCCCCCeEEeecCcccCCC--------------------------Cc---------------------
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNTLKNMN--------------------------AL--------------------- 114 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------------~~--------------------- 114 (331)
|.+....+..+..+++|++|++++|.++..+ ..
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~ 210 (680)
T 1ziw_A 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210 (680)
T ss_dssp SCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHH
T ss_pred CcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChh
Confidence 5554444444445555555555544433211 00
Q ss_pred ------------------------cCCchhhhhCCc--CCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccc
Q 045822 115 ------------------------SGSIPDEIRNLK--SLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISN 168 (331)
Q Consensus 115 ------------------------~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 168 (331)
.+..+..+..++ +|+.|++++|.+....+..+..+++|+++++++|.+....+.
T Consensus 211 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (680)
T 1ziw_A 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290 (680)
T ss_dssp HHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT
T ss_pred hHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh
Confidence 000011122222 255555555555444444455555555555555555443333
Q ss_pred cccCCCCCCEEEccCCcCCC---------CcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCC-------
Q 045822 169 EITNLRSISDLQLSENTLDG---------SIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYEN------- 232 (331)
Q Consensus 169 ~l~~~~~L~~L~l~~~~~~~---------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~------- 232 (331)
.+..+++|++|+++++.... .....+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 291 ~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l 370 (680)
T 1ziw_A 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370 (680)
T ss_dssp TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE
T ss_pred hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc
Confidence 34444444444443322110 00113444555666666666555444444555555555554443
Q ss_pred ---------------------ccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccc------
Q 045822 233 ---------------------SLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVG------ 285 (331)
Q Consensus 233 ---------------------~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------ 285 (331)
.+.+..+..+..+++|+.|++++|.+.+.++.......++|++|++++|++.+
T Consensus 371 ~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 450 (680)
T 1ziw_A 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450 (680)
T ss_dssp CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT
T ss_pred chhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh
Confidence 33333344455666677777776666554443222222335555555555432
Q ss_pred --------------------cCCCCCCCCCcceEEEeccceeccccChhhHHhhh
Q 045822 286 --------------------EIPLGHGKFSSLIQLILTNNELSRQLSPELGSLIM 320 (331)
Q Consensus 286 --------------------~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~~ 320 (331)
..+..+..+++|+.|++++|++++..|..|..+..
T Consensus 451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 505 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505 (680)
T ss_dssp TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccc
Confidence 34555666777777777777777555555555443
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.3e-31 Score=237.68 Aligned_cols=283 Identities=29% Similarity=0.435 Sum_probs=148.5
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|++|++++|.+++..+ +.++++|++|++++|.+....+ +.++++|++|++++|.+... + .+.++++|++|+++
T Consensus 69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-D-PLKNLTNLNRLELS 142 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEEEE
T ss_pred CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-h-HHcCCCCCCEEECC
Confidence 35666666666653322 5666666666666666654332 56666666666666666532 2 25666666666666
Q ss_pred cceeeecCc-------------------ccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCc
Q 045822 81 NNLLFGLIP-------------------NEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGS 141 (331)
Q Consensus 81 ~~~~~~~~~-------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 141 (331)
+|.+..... ..+..+++|++|++++|.+..+ ..+..+++|+.|++++|.+.+.
T Consensus 143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--------SVLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--------hhhccCCCCCEEEecCCccccc
Confidence 666543210 1123344444444444443321 1244445555555555554433
Q ss_pred ccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCcccccc
Q 045822 142 IPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASL 221 (331)
Q Consensus 142 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 221 (331)
.+ +..+++|+.+++++|.+... ..+..+++|++|++++|.+....+ +..+++|++|++++|.+....+ +..+
T Consensus 215 ~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l 286 (466)
T 1o6v_A 215 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred cc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCC
Confidence 22 33445555555555554432 234455566666666655543322 4555666666666665553222 4555
Q ss_pred CCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEE
Q 045822 222 TSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLI 301 (331)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 301 (331)
++|++|++++|.+.+... +..+++|+.|++++|.+.+..+ +..+ ++|+.|++++|++.+. ..+..+++|+.|+
T Consensus 287 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL-TKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGC-TTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccC-ccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 666666666665544322 4455666666666666654332 2222 2366666666655532 3455556666666
Q ss_pred eccceeccccC
Q 045822 302 LTNNELSRQLS 312 (331)
Q Consensus 302 l~~~~~~~~~p 312 (331)
+++|++++..|
T Consensus 360 l~~n~l~~~~~ 370 (466)
T 1o6v_A 360 AGHNQISDLTP 370 (466)
T ss_dssp CCSSCCCBCGG
T ss_pred CCCCccCccch
Confidence 66666654444
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2e-31 Score=245.00 Aligned_cols=292 Identities=23% Similarity=0.223 Sum_probs=204.5
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
++.++++++.+....+..+.++++|++|++++|.+....+..|..+++|++|++++|.+....+..|+++++|++|++++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 56666666666655555566666677777776666666566666666777777776666655555566666777777776
Q ss_pred ceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCccccc----------------
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLS---------------- 145 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---------------- 145 (331)
|.+....+..|..+++|++|++++|.+... .+..+..+++|+.|++++|.+.......
T Consensus 133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERI------EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBC------CTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred CCCCCCCHHHhccCCCCCEEEeeCCcCCCC------ChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence 666655445556666777777766665532 2345666666666666666665332111
Q ss_pred ccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCcc
Q 045822 146 LGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLT 225 (331)
Q Consensus 146 ~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 225 (331)
+...+.|+.+++++|.+.... .. ..++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..+..+++|+
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~-~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVR-GP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEE-CS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred ccCCchhheeeccCCcccccc-cc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 122234555555555554221 11 23578999999988874 36788899999999999999977888899999999
Q ss_pred EEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccc
Q 045822 226 TLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNN 305 (331)
Q Consensus 226 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 305 (331)
.|++++|.+.+. +..+..+++|+.|++++|.+. .++..+..+.. |+.|++++|.+.+. .+..+++|+.|++++|
T Consensus 282 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~-L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 282 RLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR-LENLYLDHNSIVTL---KLSTHHTLKNLTLSHN 355 (597)
T ss_dssp EEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT-CSEEECCSSCCCCC---CCCTTCCCSEEECCSS
T ss_pred EEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCC-CCEEECCCCCCCCc---ChhhcCCCCEEEeeCC
Confidence 999999998764 444567899999999999998 67777766654 99999999999743 3677889999999999
Q ss_pred eeccc
Q 045822 306 ELSRQ 310 (331)
Q Consensus 306 ~~~~~ 310 (331)
++...
T Consensus 356 ~~~~~ 360 (597)
T 3oja_B 356 DWDCN 360 (597)
T ss_dssp CEEHH
T ss_pred CCCCh
Confidence 98744
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-31 Score=245.04 Aligned_cols=299 Identities=24% Similarity=0.249 Sum_probs=215.9
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecc
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNN 82 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (331)
++++++++.+++ +|..+. +++++|++++|.+....+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 689999999985 555443 89999999999999888889999999999999999999777889999999999999999
Q ss_pred eeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCC--cEEEeecc
Q 045822 83 LLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNL--TTLYFSTN 160 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~l~l~~~ 160 (331)
.+... |.. .+++|++|++++|.+..+ ..|..++.+++|++|++++|.+... .+..+++| +.+++++|
T Consensus 111 ~l~~l-p~~--~l~~L~~L~Ls~N~l~~l-----~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 111 RLQNI-SCC--PMASLRHLDLSFNDFDVL-----PVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CCCEE-CSC--CCTTCSEEECCSSCCSBC-----CCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred cCCcc-Ccc--ccccCCEEECCCCCcccc-----CchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 98855 333 799999999999998854 2346899999999999999998753 34445555 99999998
Q ss_pred cC--CCcccccccCC-----------------------------------------------------------------
Q 045822 161 AL--SGSISNEITNL----------------------------------------------------------------- 173 (331)
Q Consensus 161 ~~--~~~~~~~l~~~----------------------------------------------------------------- 173 (331)
.+ ....+..+..+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 77 43333332221
Q ss_pred ----------------CCCCEEEccCCcCCCCcchhh-------------------------------------------
Q 045822 174 ----------------RSISDLQLSENTLDGSIPLAL------------------------------------------- 194 (331)
Q Consensus 174 ----------------~~L~~L~l~~~~~~~~~~~~~------------------------------------------- 194 (331)
++|++|++++|.+.+..+..+
T Consensus 260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 155666666665442222211
Q ss_pred ----------hCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccc--cccccCCCcccEEEccCCcccccc
Q 045822 195 ----------GNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSI--QKEIGDMKSLSILDLSSNKLNGSI 262 (331)
Q Consensus 195 ----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~ls~~~~~~~~ 262 (331)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+.+
T Consensus 340 ~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred CCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 44566777777777777656666677777777777777766522 344566777777777777776545
Q ss_pred chhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHh
Q 045822 263 PLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSL 318 (331)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~ 318 (331)
+.......++|+.|++++|++.+..+..+. ++|+.|++++|+++ .+|..+..+
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l 472 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL 472 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC
Confidence 554444444577777777777655554443 57777888877777 666665533
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.7e-32 Score=254.30 Aligned_cols=302 Identities=21% Similarity=0.245 Sum_probs=233.7
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCc-ccC-CChhhhccCc-------CCCeeeccCCcccccccc--ccc
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQ-LSG-LIPHEIGRLS-------SLNGLSLYSNFLKCSIPL--SLG 69 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~~~ 69 (331)
+|++|+|++|.+.+..|..+.++++|++|++++|. +.. ..|..+..++ +|++|++++|.+. .+|. .+.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 58899999999888889889999999999999997 765 5566555544 8888888888888 6777 788
Q ss_pred CCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcC-CcEEEccccccCCcccccccC
Q 045822 70 NLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKS-LLNLQLDNNTLNGSIPLSLGN 148 (331)
Q Consensus 70 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~ 148 (331)
++++|++|++++|.+. ..| .+..+++|++|++++|.+.. +|..+..+++ |+.|++++|.+. .+|..+..
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE-------IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSC-------CCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcccc-------chHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 8888888888888877 445 67778888888888887663 3455666666 777777776665 33333222
Q ss_pred -------------------------------CCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhC-
Q 045822 149 -------------------------------LTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGN- 196 (331)
Q Consensus 149 -------------------------------~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~- 196 (331)
.++|+.|++++|.+.......+..+++|++|++++|.+.......+..
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc
Confidence 225666667666666433334457899999999999987444333332
Q ss_pred ------CCCccEEEeecCcCCCCCCcccc--ccCCccEEEccCCccCccccccccCCCcccEEEccC------Ccccccc
Q 045822 197 ------LIKLVVLDLSINKLSGSIPLSFA--SLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSS------NKLNGSI 262 (331)
Q Consensus 197 ------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~------~~~~~~~ 262 (331)
+++|+.|++++|.+. ..|..+. .+++|+.|++++|.+.+ .+..+..+++|+.|++++ |.+.+.+
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccC
Confidence 338999999999999 6777776 89999999999999987 566678899999999976 7778788
Q ss_pred chhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHhh
Q 045822 263 PLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSLI 319 (331)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~ 319 (331)
|..+..+.. |+.|++++|++ +.+|..+. ++|+.|+|++|++...-+..+....
T Consensus 799 p~~l~~L~~-L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~ 851 (876)
T 4ecn_A 799 PTGITTCPS-LIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYI 851 (876)
T ss_dssp CTTGGGCSS-CCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHH
T ss_pred hHHHhcCCC-CCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccc
Confidence 888877665 99999999999 57888766 6999999999999877777776543
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5e-32 Score=247.16 Aligned_cols=305 Identities=22% Similarity=0.222 Sum_probs=214.2
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|++|++++|.+++..+..+.++++|++|++++|.+....+.+|.++++|++|++++|.+....+..+.++++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 47899999999987778889999999999999999988888889999999999999999886666678899999999999
Q ss_pred cceeeec-CcccccCCCCCCeEEeecCc-ccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEee
Q 045822 81 NNLLFGL-IPNEVGSLKSLSDLRLYNNT-LKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFS 158 (331)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 158 (331)
+|.+... .+..+.++++|++|++++|. +..++ +..+..+++|++|++++|.+.+..+..+..+++|+.+++.
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccC------HhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9988753 35678889999999999886 33221 2467788888888888888876666666666555555555
Q ss_pred cccCCCcccccccCCCCCCEEEccCCcCCCCc------------------------------------------------
Q 045822 159 TNALSGSISNEITNLRSISDLQLSENTLDGSI------------------------------------------------ 190 (331)
Q Consensus 159 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~------------------------------------------------ 190 (331)
++.........+..+++|++|++++|.+....
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 55443222222233444444444444332210
Q ss_pred ------------------------------------------chhhhCCCCccEEEeecCcCCCCCCccc-cccCCccEE
Q 045822 191 ------------------------------------------PLALGNLIKLVVLDLSINKLSGSIPLSF-ASLTSLTTL 227 (331)
Q Consensus 191 ------------------------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 227 (331)
...+...++|+.|++++|.+. ..|..+ ..+++|++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFL 339 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEE
Confidence 000111234566666666655 344443 568889999
Q ss_pred EccCCccCcccc---ccccCCCcccEEEccCCccccccc-hhhhhccccccEEEcccccccccCCCCCCCCCcceEEEec
Q 045822 228 YLYENSLCDSIQ---KEIGDMKSLSILDLSSNKLNGSIP-LSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILT 303 (331)
Q Consensus 228 ~l~~~~~~~~~~---~~~~~~~~L~~L~ls~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 303 (331)
++++|.+.+..+ ..+..+++|+.|++++|.+.+... .......++|+.|++++|++. .+|..+..+++|++|+++
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECT
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECC
Confidence 999998876442 335678899999999998874321 122333345999999999887 677778888888888888
Q ss_pred cceeccccChh
Q 045822 304 NNELSRQLSPE 314 (331)
Q Consensus 304 ~~~~~~~~p~~ 314 (331)
+|+++ .+|.+
T Consensus 419 ~N~l~-~l~~~ 428 (549)
T 2z81_A 419 STGIR-VVKTC 428 (549)
T ss_dssp TSCCS-CCCTT
T ss_pred CCCcc-cccch
Confidence 88876 44443
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.5e-32 Score=246.86 Aligned_cols=140 Identities=26% Similarity=0.240 Sum_probs=109.2
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccc-cccccccCCCcccEEEe
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKC-SIPLSLGNLTSLIYIGI 79 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l 79 (331)
+|++|++++|.+++..+..|.++++|++|++++|.+....+..++++++|++|++++|.+.. ..+..+.++++|++|++
T Consensus 51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence 58999999999998888889999999999999999998888889999999999999999874 34567889999999999
Q ss_pred ecce-eeecCcccccCCCCCCeEEeecCcccCCCC-cc----------------CCchhh-hhCCcCCcEEEccccccCC
Q 045822 80 SNNL-LFGLIPNEVGSLKSLSDLRLYNNTLKNMNA-LS----------------GSIPDE-IRNLKSLLNLQLDNNTLNG 140 (331)
Q Consensus 80 ~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~----------------~~~~~~-l~~~~~L~~L~l~~~~~~~ 140 (331)
++|. +....+..+..+++|++|++++|.+..... .. ..++.. +..+++|+.|++++|.+.+
T Consensus 131 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred CCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 9987 454545678888999999999887764210 00 011111 2346777777777776653
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.8e-31 Score=224.81 Aligned_cols=288 Identities=21% Similarity=0.258 Sum_probs=142.1
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
+++++++++.++ .+|..+. +++++|++++|.+....+..+.++++|++|++++|.+....+..+.++++|++|++++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 445555555554 2332222 4555566655555555444555555566666665555544455555555666666655
Q ss_pred ceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCC--cccccccCCCCCcEEEeec
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNG--SIPLSLGNLTNLTTLYFST 159 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~ 159 (331)
|.+... +..+. ++|++|++++|.+... .+..+..+++|+.|+++++.+.. ..+..+..+++|+++++++
T Consensus 110 n~l~~l-~~~~~--~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 110 NQLKEL-PEKMP--KTLQELRVHENEITKV------RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp SCCSBC-CSSCC--TTCCEEECCSSCCCBB------CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred CcCCcc-Chhhc--ccccEEECCCCccccc------CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 555432 22221 4555555555554432 12345555555555555555532 3334455555555555555
Q ss_pred ccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcccc
Q 045822 160 NALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQ 239 (331)
Q Consensus 160 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 239 (331)
|.++. .+..+. ++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. ..+
T Consensus 181 n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 256 (330)
T 1xku_A 181 TNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256 (330)
T ss_dssp SCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred Ccccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCC
Confidence 55542 222211 45555555555554444445555555555555555555444444555555555555555554 233
Q ss_pred ccccCCCcccEEEccCCccccccchhhhhc-----cccccEEEcccccccc--cCCCCCCCCCcceEEEeccc
Q 045822 240 KEIGDMKSLSILDLSSNKLNGSIPLSLTNL-----TNSLKVLSLSSNNIVG--EIPLGHGKFSSLIQLILTNN 305 (331)
Q Consensus 240 ~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 305 (331)
..+..+++|+.|++++|.+++..+..+... ..+++.+++++|++.. ..+..+..++.++.+++++|
T Consensus 257 ~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 334455555555555555553222222111 1235555555555431 23344555555555555554
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.5e-31 Score=228.56 Aligned_cols=275 Identities=23% Similarity=0.246 Sum_probs=178.7
Q ss_pred CccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEee
Q 045822 25 HLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLY 104 (331)
Q Consensus 25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (331)
+++.++++++.+..+ |..+ .++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcccc-CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 577777777766633 3322 2567777777777765555667777777777777777776666677777777777777
Q ss_pred cCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCC--cccccccCCCCCCEEEcc
Q 045822 105 NNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSG--SISNEITNLRSISDLQLS 182 (331)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~ 182 (331)
+|.+..++ ..+. ++|++|++++|.+....+..+..+++|+.+++++|.+.. ..+..+..+ +|++|+++
T Consensus 111 ~n~l~~l~-------~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 111 KNHLVEIP-------PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp SSCCCSCC-------SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCcCCccC-------cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 77666432 2222 567777777777765555556777777777777776642 334455555 67777777
Q ss_pred CCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCcccccc
Q 045822 183 ENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSI 262 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~ 262 (331)
+|.+... +..+ .++|++|++++|.+....+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+. .+
T Consensus 181 ~n~l~~l-~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 181 EAKLTGI-PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp SSBCSSC-CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred CCCCCcc-Cccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 7776542 2222 256777777777777655566777777777777777776666666667777777777777776 56
Q ss_pred chhhhhccccccEEEcccccccccCCCCCCC------CCcceEEEeccceec--cccChhhHH
Q 045822 263 PLSLTNLTNSLKVLSLSSNNIVGEIPLGHGK------FSSLIQLILTNNELS--RQLSPELGS 317 (331)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~p~~~~~ 317 (331)
+..+..... |+.|++++|++.+..+..++. .+.|+.|++.+|++. +..|..|..
T Consensus 257 p~~l~~l~~-L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 257 PAGLPDLKL-LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp CTTGGGCTT-CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred ChhhhcCcc-CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 655555443 777777777776555555543 356777777777765 344444443
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-32 Score=248.35 Aligned_cols=274 Identities=21% Similarity=0.231 Sum_probs=207.9
Q ss_pred CCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeE
Q 045822 22 HLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDL 101 (331)
Q Consensus 22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 101 (331)
.+++++.++++++.+..+.+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45789999999999998888889999999999999999987777799999999999999999998888889999999999
Q ss_pred EeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEc
Q 045822 102 RLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQL 181 (331)
Q Consensus 102 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 181 (331)
++++|.+..++ +..+..+++|+.|++++|.+....+..|..+++|++|++++|.+.... +..+++|+.+++
T Consensus 129 ~L~~n~l~~l~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l 199 (597)
T 3oja_B 129 VLERNDLSSLP------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANV 199 (597)
T ss_dssp ECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEEC
T ss_pred EeeCCCCCCCC------HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhc
Confidence 99999888543 244688999999999999999888888999999999999999887542 344555666666
Q ss_pred cCCcCCCC------------------cchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcccccccc
Q 045822 182 SENTLDGS------------------IPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIG 243 (331)
Q Consensus 182 ~~~~~~~~------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 243 (331)
++|.+... .+. ...++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..+..+.
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ccCccccccCCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 55544311 111 112456777777776663 24566777777777777777766666677
Q ss_pred CCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceecccc
Q 045822 244 DMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQL 311 (331)
Q Consensus 244 ~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 311 (331)
.+++|+.|++++|.+.+ ++..+...+ +|+.|++++|.+. .++..+..+++|+.|++++|.+++..
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~-~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCT-TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CccCCCEEECCCCCCCC-CCcccccCC-CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence 77777777777777763 443333333 4777777777776 45556666777777777777776443
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.4e-30 Score=241.49 Aligned_cols=312 Identities=24% Similarity=0.245 Sum_probs=215.8
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
++++|+|++|.++...+..|.++++|++|++++|++..+.+.+|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 47899999999997788889999999999999999988888889999999999999999886666778999999999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccC------------
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGN------------ 148 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------------ 148 (331)
+|.+....+..|.++++|++|++++|.+..+ ..|..+..+++|++|++++|.+....+..+..
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSF-----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccC-----CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 9998877777788999999999999887754 34566778888888888877654322211110
Q ss_pred --------------------------------------------------------------------------------
Q 045822 149 -------------------------------------------------------------------------------- 148 (331)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (331)
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence
Q ss_pred ---------------------------------------CCCCcEEEeecccCCCccc-------------------ccc
Q 045822 149 ---------------------------------------LTNLTTLYFSTNALSGSIS-------------------NEI 170 (331)
Q Consensus 149 ---------------------------------------~~~L~~l~l~~~~~~~~~~-------------------~~l 170 (331)
...++.+++.++.+..... ...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 0011222222221110000 001
Q ss_pred cCCCCCCEEEccCCcCCCC--------------------------------------------------cchhhhCCCCc
Q 045822 171 TNLRSISDLQLSENTLDGS--------------------------------------------------IPLALGNLIKL 200 (331)
Q Consensus 171 ~~~~~L~~L~l~~~~~~~~--------------------------------------------------~~~~~~~~~~L 200 (331)
..+++|+.+++++|.+... ....+..++++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 1234566666655533100 01123334455
Q ss_pred cEEEeecCcCCCCCCccccccCCccEEEccCCccCc-cccccccCCCcccEEEccCCccccccchhhhhccccccEEEcc
Q 045822 201 VVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCD-SIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLS 279 (331)
Q Consensus 201 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~ 279 (331)
+.++++.|.+....+..+..++.++.|++++|.... ..+..+..+++|+.|++++|.+.+..+..+..+. +|++|+++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~-~L~~L~Ls 526 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMS 526 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC-CCCEEECC
Confidence 555555555554555566677788888888776443 3456677788888888888888755555555554 48888888
Q ss_pred cccccccCCCCCCCCCcceEEEeccceeccccChhhHHh
Q 045822 280 SNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSL 318 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~ 318 (331)
+|++.+..+..+..+++|++|++++|++++..|..+.++
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 888887677778888888888888888887777777655
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.7e-30 Score=219.16 Aligned_cols=271 Identities=22% Similarity=0.246 Sum_probs=227.6
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
++++|++++|.+++..+..+.++++|++|++++|.+....+..+..+++|++|++++|.+. .++..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 4789999999999888878999999999999999999888999999999999999999988 4555544 799999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecc
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTN 160 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 160 (331)
+|.+....+..+..+++|++|++++|.+...+ ..+..+..+++|+.|+++++.+.. .+..+. ++|+.+++++|
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n 202 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSG----IENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGN 202 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG----BCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTS
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccC----cChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCC
Confidence 99998888888999999999999999886432 334678899999999999999884 444332 78999999999
Q ss_pred cCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccc
Q 045822 161 ALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQK 240 (331)
Q Consensus 161 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 240 (331)
.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+.+....
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence 998777788999999999999999998766678889999999999999998 6777888999999999999999887666
Q ss_pred cccC------CCcccEEEccCCcccc-ccchhhhhccccccEEEccccc
Q 045822 241 EIGD------MKSLSILDLSSNKLNG-SIPLSLTNLTNSLKVLSLSSNN 282 (331)
Q Consensus 241 ~~~~------~~~L~~L~ls~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 282 (331)
.+.. .+.++.+++++|++.. .++...+.+..+++.+++++|+
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 5543 4789999999999863 2333445555569999999874
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=248.98 Aligned_cols=306 Identities=24% Similarity=0.294 Sum_probs=253.2
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccc-cccccCCCcccEEEeec
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSI-PLSLGNLTSLIYIGISN 81 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~ 81 (331)
+..+.+++.++. +|. -.+++++|++++|.+....+..|.++++|++|++++|.....+ +..|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 356667777773 444 4478999999999999888899999999999999999654344 78899999999999999
Q ss_pred ceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchh--hhhCCcCCcEEEccccccCCccc-ccccCCCCCcEEEee
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPD--EIRNLKSLLNLQLDNNTLNGSIP-LSLGNLTNLTTLYFS 158 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~ 158 (331)
|.+....|..|.++++|++|++++|.+.. ..+. .+..+++|++|++++|.+.+..+ ..|..+++|++|+++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSD------AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSS------CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCc------ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 99998889999999999999999998774 2223 38889999999999999986654 468999999999999
Q ss_pred cccCCCcccccccCC--CCCCEEEccCCcCCCCcchhhhCCCC------ccEEEeecCcCCCCCCcccc-----------
Q 045822 159 TNALSGSISNEITNL--RSISDLQLSENTLDGSIPLALGNLIK------LVVLDLSINKLSGSIPLSFA----------- 219 (331)
Q Consensus 159 ~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~~~~----------- 219 (331)
+|.+....+..+..+ ++|+.|++++|.+....+..+..+++ |+.|++++|.+....+..+.
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 999987777777766 89999999999987666655555554 99999999976644333222
Q ss_pred -------------------------c--cCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhcccc
Q 045822 220 -------------------------S--LTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNS 272 (331)
Q Consensus 220 -------------------------~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~ 272 (331)
. .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.... +
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~ 315 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-N 315 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-S
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-C
Confidence 1 26899999999999888788889999999999999999866665665555 5
Q ss_pred ccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHhh
Q 045822 273 LKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSLI 319 (331)
Q Consensus 273 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~ 319 (331)
|+.|++++|.+.+..+..+..+++|+.|++++|++....+..|..+.
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 99999999999877888999999999999999999866666665544
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=6.1e-31 Score=229.81 Aligned_cols=273 Identities=21% Similarity=0.237 Sum_probs=204.0
Q ss_pred CCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeE
Q 045822 22 HLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDL 101 (331)
Q Consensus 22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 101 (331)
.++++++|+++++.+..+.+..+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46899999999999998877888999999999999999986667789999999999999999988888889999999999
Q ss_pred EeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEc
Q 045822 102 RLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQL 181 (331)
Q Consensus 102 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 181 (331)
++++|.+..++ +..+..+++|++|++++|.+....+..+..+++|+.|++++|.++... +..+++|+++++
T Consensus 123 ~L~~n~l~~l~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l 193 (390)
T 3o6n_A 123 VLERNDLSSLP------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANV 193 (390)
T ss_dssp ECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEEC
T ss_pred ECCCCccCcCC------HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeec
Confidence 99999888543 134688999999999999998777778999999999999999887542 344555666665
Q ss_pred cCCcCCCC------------------cchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcccccccc
Q 045822 182 SENTLDGS------------------IPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIG 243 (331)
Q Consensus 182 ~~~~~~~~------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 243 (331)
++|.+... .+. ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+.
T Consensus 194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp CSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 55544311 111 1234666677777666632 3566677777777777777666666666
Q ss_pred CCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccc
Q 045822 244 DMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQ 310 (331)
Q Consensus 244 ~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 310 (331)
.+++|+.|++++|.+. .++..+...+ +|+.|++++|++. .++..+..+++|+.|++++|++++.
T Consensus 270 ~l~~L~~L~L~~n~l~-~~~~~~~~l~-~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 270 KMQRLERLYISNNRLV-ALNLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp TCSSCCEEECCSSCCC-EEECSSSCCT-TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred ccccCCEEECCCCcCc-ccCcccCCCC-CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence 7777777777777766 3333333333 4777777777766 4555566667777777777777644
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2e-31 Score=225.61 Aligned_cols=250 Identities=28% Similarity=0.422 Sum_probs=212.8
Q ss_pred CCccEEEeccCcccC--CChhhhccCcCCCeeeccC-CcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCe
Q 045822 24 THLKLLSFSKNQLSG--LIPHEIGRLSSLNGLSLYS-NFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSD 100 (331)
Q Consensus 24 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 100 (331)
.++++|+++++.+.. ..+..+.++++|++|++++ |.+...+|..+.++++|++|++++|.+....|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999998887 6788889999999999995 8887778888999999999999999988778888999999999
Q ss_pred EEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCC-CCcEEEeecccCCCcccccccCCCCCCEE
Q 045822 101 LRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLT-NLTTLYFSTNALSGSISNEITNLRSISDL 179 (331)
Q Consensus 101 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~l~~~~~L~~L 179 (331)
|++++|.+.. .+|..+..+++|++|++++|.+.+..|..+..++ +|+.+++++|.+....+..+..++ |++|
T Consensus 130 L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 130 LDFSYNALSG------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp EECCSSEEES------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred EeCCCCccCC------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 9999987763 4567788899999999999998877888888887 899999999988877777888776 9999
Q ss_pred EccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccc
Q 045822 180 QLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN 259 (331)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~ 259 (331)
++++|.+....+..+..+++|+.|++++|.+....+. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 9999988777778888999999999999998855544 777899999999999998778888888999999999999998
Q ss_pred cccchhhhhccccccEEEcccccc
Q 045822 260 GSIPLSLTNLTNSLKVLSLSSNNI 283 (331)
Q Consensus 260 ~~~~~~~~~~~~~L~~L~l~~~~~ 283 (331)
+.+|.. ... ++|+.+++++|+.
T Consensus 282 ~~ip~~-~~l-~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 282 GEIPQG-GNL-QRFDVSAYANNKC 303 (313)
T ss_dssp EECCCS-TTG-GGSCGGGTCSSSE
T ss_pred ccCCCC-ccc-cccChHHhcCCCC
Confidence 777765 344 4599999999874
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.2e-29 Score=226.58 Aligned_cols=294 Identities=30% Similarity=0.417 Sum_probs=212.4
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
++++|+++++.+.. ++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+....+ +.++++|++|+++
T Consensus 47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 47899999999884 44 38899999999999999986544 8899999999999999984433 8999999999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCC-------------chhhhhCCcCCcEEEccccccCCccccccc
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGS-------------IPDEIRNLKSLLNLQLDNNTLNGSIPLSLG 147 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 147 (331)
+|.+....+ +..+++|++|++++|.+...+.+... ....+..+++|+.|++++|.+.+. ..+.
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~ 196 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLA 196 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGG
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhc
Confidence 999876533 88999999999999988764321100 001255566677777777666532 2355
Q ss_pred CCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEE
Q 045822 148 NLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTL 227 (331)
Q Consensus 148 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 227 (331)
.+++|+++++++|.+....+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 270 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence 66777777777776664333 55667777777777776543 356677778888888877764433 6677888888
Q ss_pred EccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEecccee
Q 045822 228 YLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNEL 307 (331)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 307 (331)
++++|.+.+... +..+++|+.|++++|.+.+..+ +... ++|+.|++++|++.+..+ +..+++|++|++++|++
T Consensus 271 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL-KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGC-TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred ECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCC-CCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence 888887765433 6677888888888888774332 3333 458888888888875444 67788888888888888
Q ss_pred ccccChhhHHhh
Q 045822 308 SRQLSPELGSLI 319 (331)
Q Consensus 308 ~~~~p~~~~~~~ 319 (331)
++. +.++.+.
T Consensus 344 ~~~--~~l~~l~ 353 (466)
T 1o6v_A 344 SDV--SSLANLT 353 (466)
T ss_dssp CCC--GGGTTCT
T ss_pred CCc--hhhccCC
Confidence 754 3444433
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.5e-30 Score=218.08 Aligned_cols=289 Identities=22% Similarity=0.276 Sum_probs=238.4
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
++++++++++.++ .+|..+ .+++++|++++|.+....+..+.++++|++|++++|.+....+..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3788999999888 455544 3789999999999998888889999999999999999997778899999999999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCC--cccccccCCCCCcEEEee
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNG--SIPLSLGNLTNLTTLYFS 158 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~ 158 (331)
+|.+... |..+. ++|++|++++|.+..++ +..+..+++|+.|++++|.+.. ..+..+..+ +|++++++
T Consensus 111 ~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 111 KNHLVEI-PPNLP--SSLVELRIHDNRIRKVP------KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp SSCCCSC-CSSCC--TTCCEEECCSSCCCCCC------SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCcCCcc-Ccccc--ccCCEEECCCCccCccC------HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 9998754 33333 89999999999888543 2568899999999999999863 556667766 89999999
Q ss_pred cccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccc
Q 045822 159 TNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSI 238 (331)
Q Consensus 159 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 238 (331)
+|.++. .+..+. ++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. .
T Consensus 181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l 256 (332)
T 2ft3_A 181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-V 256 (332)
T ss_dssp SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-C
T ss_pred CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-c
Confidence 999885 333332 689999999999987777889999999999999999997777789999999999999999974 5
Q ss_pred cccccCCCcccEEEccCCccccccchhhhhc-----cccccEEEccccccc--ccCCCCCCCCCcceEEEeccce
Q 045822 239 QKEIGDMKSLSILDLSSNKLNGSIPLSLTNL-----TNSLKVLSLSSNNIV--GEIPLGHGKFSSLIQLILTNNE 306 (331)
Q Consensus 239 ~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 306 (331)
+..+..+++|+.|++++|.+++..+..+... ..+++.|++++|++. +..+.++..+++|+.+++++|+
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5567889999999999999985544444332 345899999999887 5667788999999999999985
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.1e-30 Score=220.99 Aligned_cols=252 Identities=35% Similarity=0.519 Sum_probs=213.0
Q ss_pred cCCCeeeccCCcccc--cccccccCCCcccEEEeec-ceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhC
Q 045822 48 SSLNGLSLYSNFLKC--SIPLSLGNLTSLIYIGISN-NLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRN 124 (331)
Q Consensus 48 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 124 (331)
.+++.|+++++.+.. .++..+.++++|++|++++ +.+....|..+..+++|++|++++|.+.. .+|..+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG------AIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE------ECCGGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC------cCCHHHhC
Confidence 578999999999886 7888899999999999995 77877778889999999999999987763 45677888
Q ss_pred CcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCC-CCCEEEccCCcCCCCcchhhhCCCCccEE
Q 045822 125 LKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLR-SISDLQLSENTLDGSIPLALGNLIKLVVL 203 (331)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 203 (331)
+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..++ .|++|++++|.+....+..+..++ |++|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 99999999999998878888888899999999999988877778888887 899999999988766777777776 9999
Q ss_pred EeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccc
Q 045822 204 DLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNI 283 (331)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 283 (331)
++++|.+.+..+..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+.++..+..... |+.|++++|++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l 280 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF-LHSLNVSFNNL 280 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTT-CCEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcC-CCEEECcCCcc
Confidence 9999988877788888899999999999988755444 677899999999999998888877776664 99999999999
Q ss_pred cccCCCCCCCCCcceEEEeccce-ecc
Q 045822 284 VGEIPLGHGKFSSLIQLILTNNE-LSR 309 (331)
Q Consensus 284 ~~~~~~~~~~~~~L~~L~l~~~~-~~~ 309 (331)
.+.+|.. ..+++|+.+++++|+ +.+
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cccCCCC-ccccccChHHhcCCCCccC
Confidence 8777766 778899999999997 443
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.5e-28 Score=218.20 Aligned_cols=274 Identities=24% Similarity=0.228 Sum_probs=178.3
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|++|+++++.+++. + .+..+++|++|++++|.+..+ + +..+++|++|++++|.+... + +.++++|++|+++
T Consensus 43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD 114 (457)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence 578999999998854 4 588999999999999988865 2 77889999999999988743 2 7889999999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecc
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTN 160 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 160 (331)
+|.+... + +..+++|++|++++|.++.++ +..+++|++|++++|...+.. .+..+++|+.+++++|
T Consensus 115 ~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~---------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 115 TNKLTKL-D--VSQNPLLTYLNCARNTLTEID---------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp SSCCSCC-C--CTTCTTCCEEECTTSCCSCCC---------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CCcCCee-c--CCCCCcCCEEECCCCccceec---------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 9988764 2 778889999999988877532 455566666666666332222 2445556666666666
Q ss_pred cCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccc
Q 045822 161 ALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQK 240 (331)
Q Consensus 161 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 240 (331)
.++.. + +..+++|++|++++|.+... .+..+++|++|++++|.+.+ .| +..+++|++|++++|.+.+....
T Consensus 181 ~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 181 KITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp CCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT
T ss_pred cccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH
Confidence 55532 1 44555555555555555432 24455555555555555553 22 44455555555555555443222
Q ss_pred c-----------------------------ccCCCcccEEEccCCccccccchh--------hhhccccccEEEcccccc
Q 045822 241 E-----------------------------IGDMKSLSILDLSSNKLNGSIPLS--------LTNLTNSLKVLSLSSNNI 283 (331)
Q Consensus 241 ~-----------------------------~~~~~~L~~L~ls~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~ 283 (331)
. +..+++|+.|++++|...+.++.. +... ++|+.|++++|++
T Consensus 252 ~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~-~~L~~L~L~~N~l 330 (457)
T 3bz5_A 252 TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN-PKLVYLYLNNTEL 330 (457)
T ss_dssp TCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC-TTCCEEECTTCCC
T ss_pred HCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhc-ccCCEEECCCCcc
Confidence 1 234466666666666554443321 2222 3477888888877
Q ss_pred cccCCCCCCCCCcceEEEeccceecc
Q 045822 284 VGEIPLGHGKFSSLIQLILTNNELSR 309 (331)
Q Consensus 284 ~~~~~~~~~~~~~L~~L~l~~~~~~~ 309 (331)
.+ + .+..+++|+.|++++|++++
T Consensus 331 ~~-l--~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 331 TE-L--DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp SC-C--CCTTCTTCSEEECCSSCCCB
T ss_pred cc-c--ccccCCcCcEEECCCCCCCC
Confidence 75 2 37778888888888888875
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1e-27 Score=222.23 Aligned_cols=307 Identities=25% Similarity=0.262 Sum_probs=228.6
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|++|+|++|++++..+++|.++++|++|+|++|++....+.+|.++++|++|++++|.+....+..|+++++|++|+++
T Consensus 77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls 156 (635)
T 4g8a_A 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 156 (635)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence 58999999999998888889999999999999999998888889999999999999999986666678999999999999
Q ss_pred cceeeec-CcccccCCCCCCeEEeecCcccCCCCccC---------------------Cc--------------------
Q 045822 81 NNLLFGL-IPNEVGSLKSLSDLRLYNNTLKNMNALSG---------------------SI-------------------- 118 (331)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---------------------~~-------------------- 118 (331)
+|.+... .+..+..+++|++|++++|.++.+...+- .+
T Consensus 157 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 157 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred cCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccc
Confidence 9988653 46777889999999998876643210000 00
Q ss_pred -----h--------------------------------------------------------------------------
Q 045822 119 -----P-------------------------------------------------------------------------- 119 (331)
Q Consensus 119 -----~-------------------------------------------------------------------------- 119 (331)
+
T Consensus 237 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (635)
T 4g8a_A 237 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV 316 (635)
T ss_dssp SHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred cccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence 0
Q ss_pred -----hhhhCCcCCcEEEccc-------------------------------------------cccCCc--ccccccCC
Q 045822 120 -----DEIRNLKSLLNLQLDN-------------------------------------------NTLNGS--IPLSLGNL 149 (331)
Q Consensus 120 -----~~l~~~~~L~~L~l~~-------------------------------------------~~~~~~--~~~~~~~~ 149 (331)
..+.....++.|.+.+ +.+... .+..+...
T Consensus 317 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 396 (635)
T 4g8a_A 317 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 396 (635)
T ss_dssp EEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSC
T ss_pred ccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhh
Confidence 0001111222333222 221100 01111122
Q ss_pred CCCcEEE-----------------------eecccCCC-cccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEe
Q 045822 150 TNLTTLY-----------------------FSTNALSG-SISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDL 205 (331)
Q Consensus 150 ~~L~~l~-----------------------l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 205 (331)
.+++.++ +.++.... .....+..+++++.++++.|.+....+..+..++.++.|++
T Consensus 397 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L 476 (635)
T 4g8a_A 397 ISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476 (635)
T ss_dssp SCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred hhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 3444444 44332221 12334567778888888888877667777888999999999
Q ss_pred ecCcCC-CCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEccccccc
Q 045822 206 SINKLS-GSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIV 284 (331)
Q Consensus 206 ~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 284 (331)
++|... ...|..+..+++|++|++++|++.+..+..|..+++|+.|++++|.+++..+..+..+. +|+.|++++|++.
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~l~ 555 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIM 555 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT-TCCEEECTTSCCC
T ss_pred hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC-CCCEEECCCCcCC
Confidence 999754 34677889999999999999999988888899999999999999999965555555555 5999999999999
Q ss_pred ccCCCCCCCC-CcceEEEeccceec
Q 045822 285 GEIPLGHGKF-SSLIQLILTNNELS 308 (331)
Q Consensus 285 ~~~~~~~~~~-~~L~~L~l~~~~~~ 308 (331)
+..+..+..+ ++|+.|++++|++.
T Consensus 556 ~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 556 TSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp BCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 8888899888 68999999999885
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.1e-28 Score=205.70 Aligned_cols=250 Identities=25% Similarity=0.304 Sum_probs=201.2
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCccccc--ccccccCCCcccEEEee
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCS--IPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~ 80 (331)
+.++.+++.++ .+|..+. +++++|+++++.+..+.+..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45777777777 4444333 6899999999999877777788999999999999988632 25566678999999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecc
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTN 160 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 160 (331)
+|.+... +..+..+++|++|++++|.+...+. ...+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 87 ~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 87 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSE-----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp SCSEEEE-EEEEETCTTCCEEECTTSEEESSTT-----TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred CCccccC-hhhcCCCCCCCEEECCCCccccccc-----chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence 9988754 5568889999999999998875431 145778899999999999888777777888899999999998
Q ss_pred cCCC-cccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcccc
Q 045822 161 ALSG-SISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQ 239 (331)
Q Consensus 161 ~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 239 (331)
.+.+ ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 8875 466778888899999999998876667778888899999999998886666677888899999999998887777
Q ss_pred ccccCCC-cccEEEccCCccccc
Q 045822 240 KEIGDMK-SLSILDLSSNKLNGS 261 (331)
Q Consensus 240 ~~~~~~~-~L~~L~ls~~~~~~~ 261 (331)
..+..++ +|+.|++++|.+...
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEECS
T ss_pred HHHHhhhccCCEEEccCCCeecc
Confidence 7777774 899999999888754
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=209.91 Aligned_cols=283 Identities=18% Similarity=0.167 Sum_probs=219.5
Q ss_pred cCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCC
Q 045822 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLS 99 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 99 (331)
-..|+.....+++++.+..+ |..+. ++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|+
T Consensus 27 ~~~C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CCEECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 34567777788888887754 33332 4899999999998865566888999999999999988887778888999999
Q ss_pred eEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCccc-ccccCCCCCcEEEeecc-cCCCcccccccCCCCCC
Q 045822 100 DLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIP-LSLGNLTNLTTLYFSTN-ALSGSISNEITNLRSIS 177 (331)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~ 177 (331)
+|++++|.++.++ +..+..+++|++|++++|.+..... ..+..+++|+++++++| .+....+..+..+++|+
T Consensus 104 ~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 104 HLDLSYNYLSNLS------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp EEECCSSCCSSCC------HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred EEECCCCcCCcCC------HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 9999999887432 2448889999999999998885444 46788899999999988 46655567788889999
Q ss_pred EEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccc---cCCCcccEEEcc
Q 045822 178 DLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEI---GDMKSLSILDLS 254 (331)
Q Consensus 178 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~ls 254 (331)
+|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+.+.....+ ...+.++.++++
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 99999998877667888889999999999998874333345568899999999999876544333 346788899999
Q ss_pred CCccccc----cchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccC
Q 045822 255 SNKLNGS----IPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLS 312 (331)
Q Consensus 255 ~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 312 (331)
++.+.+. ++..+.... +|+.|++++|++.......+..+++|++|++++|++....|
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQIS-GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccCcchhhhHHHHhccc-CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9888753 344444444 59999999999984333446899999999999999986554
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=2.4e-27 Score=210.43 Aligned_cols=283 Identities=21% Similarity=0.230 Sum_probs=180.1
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|++|++++|.+++. + +..+++|++|++++|.+... .++.+++|++|++++|.+.. ++ +.++++|++|+++
T Consensus 65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence 478888888888753 2 77888888888888887764 26778888888888888774 32 6778888888888
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecc
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTN 160 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 160 (331)
+|.+... .+..+++|++|++++|.... .+ .+..+++|+.|++++|.+.+ .+ +..+++|+.+++++|
T Consensus 136 ~N~l~~l---~l~~l~~L~~L~l~~n~~~~------~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 136 RNTLTEI---DVSHNTQLTELDCHLNKKIT------KL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTN 201 (457)
T ss_dssp TSCCSCC---CCTTCTTCCEEECTTCSCCC------CC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSS
T ss_pred CCcccee---ccccCCcCCEEECCCCCccc------cc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCC
Confidence 8877653 25566677777776663211 11 24445566666666665553 22 444555555555555
Q ss_pred cCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCcc-----------------------
Q 045822 161 ALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLS----------------------- 217 (331)
Q Consensus 161 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------------- 217 (331)
.++.. .+..+++|++|++++|.+.+. + +..+++|+.|++++|.+.+..+..
T Consensus 202 ~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 202 NITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred cCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCc
Confidence 55432 244455555555555555432 2 444455555555555444222111
Q ss_pred ------ccccCCccEEEccCCccCccccc--------cccCCCcccEEEccCCccccccchhhhhccccccEEEcccccc
Q 045822 218 ------FASLTSLTTLYLYENSLCDSIQK--------EIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNI 283 (331)
Q Consensus 218 ------~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 283 (331)
+..+++|+.|++++|...+..+. .+..+++|+.|++++|.+++ + .+..+. +|+.|++++|++
T Consensus 276 ~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l--~l~~l~-~L~~L~l~~N~l 351 (457)
T 3bz5_A 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-L--DVSHNT-KLKSLSCVNAHI 351 (457)
T ss_dssp TCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-C--CCTTCT-TCSEEECCSSCC
T ss_pred cCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-c--ccccCC-cCcEEECCCCCC
Confidence 23456777777777764432221 25678999999999999986 3 255554 599999999999
Q ss_pred cccCCC--C-------C---CCCCcceEEEeccceeccccChhhHH
Q 045822 284 VGEIPL--G-------H---GKFSSLIQLILTNNELSRQLSPELGS 317 (331)
Q Consensus 284 ~~~~~~--~-------~---~~~~~L~~L~l~~~~~~~~~p~~~~~ 317 (331)
.+. +. . + ..+..|..+++++|++++.+|+.+..
T Consensus 352 ~~l-~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 352 QDF-SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp CBC-TTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred CCc-cccccccccCCcEEecceeeecCccccccCcEEEEcChhHhc
Confidence 752 11 0 1 12356788899999999999987643
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.9e-28 Score=208.54 Aligned_cols=274 Identities=21% Similarity=0.211 Sum_probs=217.5
Q ss_pred EEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecce
Q 045822 4 FLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNL 83 (331)
Q Consensus 4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 83 (331)
+.+.+++.++ .+|..+. ++|++|++++|.+..+.+..+.++++|++|++++|.+....+..+.++++|++|++++|.
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3556666676 3444333 589999999999988777789999999999999999987677789999999999999999
Q ss_pred eeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccc-cCCcccccccCCCCCcEEEeecccC
Q 045822 84 LFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNT-LNGSIPLSLGNLTNLTTLYFSTNAL 162 (331)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~ 162 (331)
+....+..+..+++|++|++++|.+..++. ...+..+++|+.|++++|+ +....+..+..+++|+.+++++|.+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-----TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCS-----SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCc-----hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 887766668899999999999998885431 0257788999999999984 6655567788899999999999998
Q ss_pred CCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccc---cccCCccEEEccCCccCcc--
Q 045822 163 SGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSF---ASLTSLTTLYLYENSLCDS-- 237 (331)
Q Consensus 163 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~-- 237 (331)
....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+ ...+.++.++++++.+.+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 87778888999999999999999875555556678999999999999886543333 2456788888888887652
Q ss_pred --ccccccCCCcccEEEccCCccccccchhhhhccccccEEEccccccccc
Q 045822 238 --IQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGE 286 (331)
Q Consensus 238 --~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 286 (331)
.+..+..+++|+.|++++|.++ .++..+....++|++|++++|++...
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 3455678899999999999998 67766544445699999999988753
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.5e-31 Score=237.47 Aligned_cols=307 Identities=20% Similarity=0.176 Sum_probs=137.5
Q ss_pred ccEEecccccccC----CCCcccCCCCCccEEEeccCcccCCChhhh-ccCc----CCCeeeccCCcccc----cccccc
Q 045822 2 LKFLGLSFNQFYG----SIPPEIGHLTHLKLLSFSKNQLSGLIPHEI-GRLS----SLNGLSLYSNFLKC----SIPLSL 68 (331)
Q Consensus 2 L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~----~L~~L~l~~~~~~~----~~~~~~ 68 (331)
|++|++++|.++. .++..+..+++|++|++++|.+....+..+ ..++ +|++|++++|.+.. .++..+
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 109 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT
T ss_pred ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH
Confidence 5566666665542 223445555666666666665543222222 2233 46666666665552 234555
Q ss_pred cCCCcccEEEeecceeeecCcccc-----cCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCccc
Q 045822 69 GNLTSLIYIGISNNLLFGLIPNEV-----GSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIP 143 (331)
Q Consensus 69 ~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 143 (331)
.++++|++|++++|.+....+..+ ...++|++|++++|.+...+. ..++..+..+++|++|++++|.+.+...
T Consensus 110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC--EPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--HHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--HHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 566666666666665543222211 123455555555554442110 0123344445556666665555443222
Q ss_pred cccc-----CCCCCcEEEeecccCCCc----ccccccCCCCCCEEEccCCcCCCCcc-----hhhhCCCCccEEEeecCc
Q 045822 144 LSLG-----NLTNLTTLYFSTNALSGS----ISNEITNLRSISDLQLSENTLDGSIP-----LALGNLIKLVVLDLSINK 209 (331)
Q Consensus 144 ~~~~-----~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~ 209 (331)
..+. ..++|++|++++|.++.. .+..+..+++|++|++++|.+.+... ..+..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 2221 123455555555544432 23333344455555555544332111 111123444444444444
Q ss_pred CCCC----CCccccccCCccEEEccCC-----------------------------ccCccc----cccccCCCcccEEE
Q 045822 210 LSGS----IPLSFASLTSLTTLYLYEN-----------------------------SLCDSI----QKEIGDMKSLSILD 252 (331)
Q Consensus 210 ~~~~----~~~~~~~~~~L~~L~l~~~-----------------------------~~~~~~----~~~~~~~~~L~~L~ 252 (331)
+... .+..+..+++|++|++++| .+.+.. +..+..+++|+.|+
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 347 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence 4321 1222333444444444444 433321 12223345555555
Q ss_pred ccCCccccccchhhhhc----cccccEEEcccccccc----cCCCCCCCCCcceEEEeccceeccc
Q 045822 253 LSSNKLNGSIPLSLTNL----TNSLKVLSLSSNNIVG----EIPLGHGKFSSLIQLILTNNELSRQ 310 (331)
Q Consensus 253 ls~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~ 310 (331)
+++|.+.+..+..+... .++|+.|++++|.+.+ .++..+..+++|++|++++|++++.
T Consensus 348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 55555544333333221 1235555555555543 3444445555566666666655543
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.1e-27 Score=202.13 Aligned_cols=226 Identities=23% Similarity=0.281 Sum_probs=176.9
Q ss_pred CCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEE
Q 045822 23 LTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLR 102 (331)
Q Consensus 23 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 102 (331)
.+++++|+++++.+. ..+..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+. ..|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467788888888777 44555666788888888888777 67777778888888888888776 4566777788888888
Q ss_pred eecCcccCCCCccCCchhh---------hhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCC
Q 045822 103 LYNNTLKNMNALSGSIPDE---------IRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNL 173 (331)
Q Consensus 103 l~~~~~~~~~~~~~~~~~~---------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~ 173 (331)
+++|.... .+|.. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.. .+..+..+
T Consensus 157 L~~n~~~~------~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l 228 (328)
T 4fcg_A 157 IRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL 228 (328)
T ss_dssp EEEETTCC------CCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC
T ss_pred CCCCCCcc------ccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccC
Confidence 87754332 23333 334888888888888887 667778888888999998888874 55567888
Q ss_pred CCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEc
Q 045822 174 RSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDL 253 (331)
Q Consensus 174 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 253 (331)
++|++|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.+++
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 88999999988887777778888889999999988888788888888899999999998888888888888999999988
Q ss_pred cCCccc
Q 045822 254 SSNKLN 259 (331)
Q Consensus 254 s~~~~~ 259 (331)
..+.+.
T Consensus 309 ~~~~~~ 314 (328)
T 4fcg_A 309 PPHLQA 314 (328)
T ss_dssp CGGGSC
T ss_pred CHHHHH
Confidence 876554
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.4e-27 Score=201.74 Aligned_cols=249 Identities=25% Similarity=0.232 Sum_probs=129.6
Q ss_pred cEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecC--cccccCCCCCCeEEee
Q 045822 27 KLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLI--PNEVGSLKSLSDLRLY 104 (331)
Q Consensus 27 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~ 104 (331)
+.++++++.+..+ |..+ .++|++|++++|.+....+..+.++++|++|++++|.+.... +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3555655555533 2222 246666666666665333334566666666666666554221 3334455566666666
Q ss_pred cCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCC
Q 045822 105 NNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSEN 184 (331)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 184 (331)
+|.+.. ++..+..+++|+.|+++++.+....+ ...+..+++|++|++++|
T Consensus 87 ~n~i~~-------l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 87 FNGVIT-------MSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp SCSEEE-------EEEEEETCTTCCEEECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTS
T ss_pred CCcccc-------ChhhcCCCCCCCEEECCCCccccccc-----------------------chhhhhccCCCEEECCCC
Confidence 555442 22334455555555555555443222 023444444555555544
Q ss_pred cCCCCcchhhhCCCCccEEEeecCcCCC-CCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccc
Q 045822 185 TLDGSIPLALGNLIKLVVLDLSINKLSG-SIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIP 263 (331)
Q Consensus 185 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~ 263 (331)
.+....+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 137 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp CCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred cCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh
Confidence 4433333444445555555555555443 244455555566666666665555445555556666666666666553333
Q ss_pred hhhhhccccccEEEcccccccccCCCCCCCCC-cceEEEeccceecc
Q 045822 264 LSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFS-SLIQLILTNNELSR 309 (331)
Q Consensus 264 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 309 (331)
..+.... +|+.|++++|++.+..+..+..++ +|+.|++++|+++.
T Consensus 217 ~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 217 FPYKCLN-SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp GGGTTCT-TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred hhccCcc-cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 2333333 366666666666655555565553 66666666666653
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=6.8e-27 Score=207.98 Aligned_cols=245 Identities=21% Similarity=0.213 Sum_probs=192.6
Q ss_pred EEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecce
Q 045822 4 FLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNL 83 (331)
Q Consensus 4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 83 (331)
.++.++..++ .+|..+. +++++|++++|.+..+.+..|.++++|++|++++|.+....+..|.++++|++|++++|.
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4555555555 3444333 578889998888887778888888889999998888886667788888889999998888
Q ss_pred eeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEcccc-ccCCcccccccCCCCCcEEEeecccC
Q 045822 84 LFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNN-TLNGSIPLSLGNLTNLTTLYFSTNAL 162 (331)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~ 162 (331)
+....+..+..+++|++|++++|.+..++ +..+..+++|+.|+++++ .+....+..|..+++|++|++++|.+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIP------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEEC------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeC------HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 88776777888888999999888877543 246778888888888884 44433444677888889999988888
Q ss_pred CCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccc
Q 045822 163 SGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEI 242 (331)
Q Consensus 163 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 242 (331)
... ..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+
T Consensus 209 ~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 209 KDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp SSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred ccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 743 346778888999999888877777788888889999999888887777778888899999999888887777777
Q ss_pred cCCCcccEEEccCCccc
Q 045822 243 GDMKSLSILDLSSNKLN 259 (331)
Q Consensus 243 ~~~~~L~~L~ls~~~~~ 259 (331)
..+++|+.|++++|++.
T Consensus 287 ~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEccCCCcC
Confidence 88888999999888765
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.8e-27 Score=198.95 Aligned_cols=253 Identities=24% Similarity=0.273 Sum_probs=173.4
Q ss_pred cEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecC
Q 045822 27 KLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNN 106 (331)
Q Consensus 27 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 106 (331)
++++++++.+..+ |..+ .++|++|++++|.+....+..+.++++|++|+++++.+....+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4566666666543 2222 356777777777777555566777777777777777777666667777777777777777
Q ss_pred c-ccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCc
Q 045822 107 T-LKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENT 185 (331)
Q Consensus 107 ~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 185 (331)
. +..+ .+..+..+++|++|++++|.+....+..+..+++|+++++++|.+.......+..+++|++|++++|.
T Consensus 91 ~~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 91 AQLRSV------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp TTCCCC------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccc------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 5 5532 13556777778888887777776666667777788888888877776555667777888888888887
Q ss_pred CCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchh
Q 045822 186 LDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLS 265 (331)
Q Consensus 186 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~ 265 (331)
+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.....+..+++|+.|++++|++.......
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 76555556777888888888888877666777778888888888888887766666778888888888888876433321
Q ss_pred -hhhccccccEEEcccccccccCCCCC
Q 045822 266 -LTNLTNSLKVLSLSSNNIVGEIPLGH 291 (331)
Q Consensus 266 -~~~~~~~L~~L~l~~~~~~~~~~~~~ 291 (331)
+.. .++.+..+.+.+....|..+
T Consensus 245 ~~~~---~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 245 PLWA---WLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHH---HHHHCCSEECCCBEEESGGG
T ss_pred HHHH---HHHhcccccCccccCCchHh
Confidence 111 13444444444444444443
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.5e-30 Score=231.01 Aligned_cols=323 Identities=21% Similarity=0.162 Sum_probs=213.9
Q ss_pred ccEEecccccccC----CCCcccCCCCCccEEEeccCcccCCChhhhc-----cCcCCCeeeccCCccccc----ccccc
Q 045822 2 LKFLGLSFNQFYG----SIPPEIGHLTHLKLLSFSKNQLSGLIPHEIG-----RLSSLNGLSLYSNFLKCS----IPLSL 68 (331)
Q Consensus 2 L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~ 68 (331)
|++|++++|.++. .++..+.++++|++|++++|.+....+..+. ..++|++|++++|.+... ++..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 5666666666652 3355566666666666666665533222222 234566777766666532 23445
Q ss_pred cCCCcccEEEeecceeeecCccccc-----CCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcc-
Q 045822 69 GNLTSLIYIGISNNLLFGLIPNEVG-----SLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSI- 142 (331)
Q Consensus 69 ~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~- 142 (331)
..+++|++|++++|.+....+..+. ..++|++|++++|.+...+. ..++..+..+++|++|++++|.+.+..
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC--RDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH--HHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH--HHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 5567777777777776543333332 25577777777776653211 023456777788888888888776432
Q ss_pred ----cccccCCCCCcEEEeecccCCCc----ccccccCCCCCCEEEccCCcCCCCcchhhh-----CCCCccEEEeecCc
Q 045822 143 ----PLSLGNLTNLTTLYFSTNALSGS----ISNEITNLRSISDLQLSENTLDGSIPLALG-----NLIKLVVLDLSINK 209 (331)
Q Consensus 143 ----~~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~ 209 (331)
+..+..+++|+++++++|.++.. .+..+..+++|++|++++|.+.+.....+. ..++|++|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 22223467888888888877743 455566688899999998877543333332 23689999999998
Q ss_pred CCCC----CCccccccCCccEEEccCCccCcccccccc-----CCCcccEEEccCCcccc----ccchhhhhccccccEE
Q 045822 210 LSGS----IPLSFASLTSLTTLYLYENSLCDSIQKEIG-----DMKSLSILDLSSNKLNG----SIPLSLTNLTNSLKVL 276 (331)
Q Consensus 210 ~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~ls~~~~~~----~~~~~~~~~~~~L~~L 276 (331)
+... .+..+..+++|++|++++|.+.+.....+. ..++|+.|++++|.+++ .++..+..+. +|++|
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L 403 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH-SLREL 403 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC-CCCEE
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC-CccEE
Confidence 8754 344556779999999999998765444333 26899999999999986 4555555555 59999
Q ss_pred EcccccccccCCCC----C-CCCCcceEEEeccceeccccChhhHHhhhhcccccc
Q 045822 277 SLSSNNIVGEIPLG----H-GKFSSLIQLILTNNELSRQLSPELGSLIMAIPDLNQ 327 (331)
Q Consensus 277 ~l~~~~~~~~~~~~----~-~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~~~~~~ 327 (331)
++++|++.+..... + .....|+.|.+.++.+.+..+..+..+....+++.+
T Consensus 404 ~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i 459 (461)
T 1z7x_W 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 459 (461)
T ss_dssp ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred ECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEe
Confidence 99999997542222 2 224579999999999987778888888777777654
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=9.1e-27 Score=206.47 Aligned_cols=245 Identities=22% Similarity=0.230 Sum_probs=177.4
Q ss_pred EEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecce
Q 045822 4 FLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNL 83 (331)
Q Consensus 4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 83 (331)
.++.++..++ .+|..+. +++++|++++|.+..+.+..|.++++|++|++++|.+....+..|.++++|++|++++|.
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4444555555 3444333 567888888888777777777788888888888888776666777788888888888887
Q ss_pred eeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccc-cCCcccccccCCCCCcEEEeecccC
Q 045822 84 LFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNT-LNGSIPLSLGNLTNLTTLYFSTNAL 162 (331)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~ 162 (331)
+....+..|..+++|++|++++|.+..++ +..+..+++|+.|++++++ +....+..|..+++|++|++++|.+
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIP------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEEC------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccC------HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 77666666777888888888888776432 2456777888888887743 3333344577778888888888877
Q ss_pred CCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccc
Q 045822 163 SGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEI 242 (331)
Q Consensus 163 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 242 (331)
+.. + .+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|++|++++|.+.......+
T Consensus 198 ~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 198 REI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp SSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 632 2 46677788888888887776666777778888888888888776667777778888888888888877666777
Q ss_pred cCCCcccEEEccCCccc
Q 045822 243 GDMKSLSILDLSSNKLN 259 (331)
Q Consensus 243 ~~~~~L~~L~ls~~~~~ 259 (331)
..+++|+.|++++|++.
T Consensus 276 ~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SSCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEcCCCCcc
Confidence 77788888888887754
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.8e-26 Score=196.36 Aligned_cols=234 Identities=22% Similarity=0.255 Sum_probs=156.5
Q ss_pred cCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcC
Q 045822 48 SSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKS 127 (331)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 127 (331)
++++.|+++++.+. .+|..+.++++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..+..+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-------~lp~~l~~l~~ 151 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-------ALPASIASLNR 151 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-------CCCGGGGGCTT
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-------cCcHHHhcCcC
Confidence 56666666666665 55555666666666666666665 44555666666666666666555 23445566666
Q ss_pred CcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeec
Q 045822 128 LLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSI 207 (331)
Q Consensus 128 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 207 (331)
|+.|++++|+.....|..+.. . .....+..+++|++|++++|.+. ..+..+..+++|++|++++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN 215 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEES
T ss_pred CCEEECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccC
Confidence 666666665544444433221 0 01112344677777777777776 4555677777888888888
Q ss_pred CcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccC
Q 045822 208 NKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEI 287 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 287 (331)
|.+. ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.++..+..+.. |+.|++++|++.+.+
T Consensus 216 N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~-L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 216 SPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ-LEKLDLRGCVNLSRL 293 (328)
T ss_dssp SCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT-CCEEECTTCTTCCCC
T ss_pred CCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC-CCEEeCCCCCchhhc
Confidence 8777 45556777788888888888777777777777888888888888877777777666554 888888888888788
Q ss_pred CCCCCCCCcceEEEeccceec
Q 045822 288 PLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 288 ~~~~~~~~~L~~L~l~~~~~~ 308 (331)
|..+.++++|+.+++..+.+.
T Consensus 294 P~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGSC
T ss_pred cHHHhhccCceEEeCCHHHHH
Confidence 888888888888887766543
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.2e-27 Score=197.43 Aligned_cols=254 Identities=24% Similarity=0.236 Sum_probs=209.0
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecc
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNN 82 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (331)
++++.++..++ .+|..+ .++|++|+++++.+..+.+..+..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 46777777777 344433 468999999999999888888999999999999999998777889999999999999999
Q ss_pred e-eeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeeccc
Q 045822 83 L-LFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNA 161 (331)
Q Consensus 83 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 161 (331)
. +....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL------GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEE------CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 7 7777678899999999999999988753 24668889999999999999987666778899999999999999
Q ss_pred CCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcccccc
Q 045822 162 LSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKE 241 (331)
Q Consensus 162 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 241 (331)
++......+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+......
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~- 243 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA- 243 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-
Confidence 9866666788999999999999999877788899999999999999999976667788999999999999998642211
Q ss_pred ccCCCcccEEEccCCccccccchhh
Q 045822 242 IGDMKSLSILDLSSNKLNGSIPLSL 266 (331)
Q Consensus 242 ~~~~~~L~~L~ls~~~~~~~~~~~~ 266 (331)
......++.+..+.+.+....|..+
T Consensus 244 ~~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 244 RPLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHHHHHHHCCSEECCCBEEESGGG
T ss_pred HHHHHHHHhcccccCccccCCchHh
Confidence 0112334555566666665555544
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1e-25 Score=205.81 Aligned_cols=270 Identities=24% Similarity=0.273 Sum_probs=220.5
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
++++|+++++.++ .+|..+. ++|++|++++|.+..+.. .+++|++|++++|.+. .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 3789999999998 5565554 899999999999985433 5789999999999987 4554 67999999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecc
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTN 160 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 160 (331)
+|.+.... . .+++|++|++++|.++.++ . .+++|+.|++++|.+.. ++. .+++|+.|++++|
T Consensus 110 ~N~l~~l~-~---~l~~L~~L~L~~N~l~~lp-------~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N 171 (622)
T 3g06_A 110 SNPLTHLP-A---LPSGLCKLWIFGNQLTSLP-------V---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNN 171 (622)
T ss_dssp SCCCCCCC-C---CCTTCCEEECCSSCCSCCC-------C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred CCcCCCCC-C---CCCCcCEEECCCCCCCcCC-------C---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCC
Confidence 99987543 3 5789999999999988543 2 23899999999999874 333 3578999999999
Q ss_pred cCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccc
Q 045822 161 ALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQK 240 (331)
Q Consensus 161 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 240 (331)
.++. ++ ..+++|+.|++++|.+.... . .+++|+.|++++|.+. ..+. .+++|+.|++++|.+.+.+
T Consensus 172 ~l~~-l~---~~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp-- 237 (622)
T 3g06_A 172 QLTS-LP---MLPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP-- 237 (622)
T ss_dssp CCSC-CC---CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC--
T ss_pred CCCC-Cc---ccCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC--
Confidence 8885 33 45689999999999987532 2 3478999999999988 3443 3489999999999997643
Q ss_pred cccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHhhh
Q 045822 241 EIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSLIM 320 (331)
Q Consensus 241 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~~ 320 (331)
..+++|+.|++++|.++ .++. .+++|+.|++++|++. .+|..+.++++|+.|++++|++++.+|..+..+..
T Consensus 238 --~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp --CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred --CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 45699999999999998 5554 3456999999999998 77888999999999999999999999999887765
Q ss_pred h
Q 045822 321 A 321 (331)
Q Consensus 321 ~ 321 (331)
.
T Consensus 310 ~ 310 (622)
T 3g06_A 310 A 310 (622)
T ss_dssp S
T ss_pred c
Confidence 3
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.1e-26 Score=204.88 Aligned_cols=227 Identities=24% Similarity=0.259 Sum_probs=202.9
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
++++|+|++|.+++..+..|.++++|++|++++|.+..+.+..|.++++|++|++++|.+....+..+.++++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 47999999999998888999999999999999999998888999999999999999999986666779999999999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecC-cccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeec
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNN-TLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFST 159 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 159 (331)
+|.+....+..|..+++|++|+++++ .+..++ +..+..+++|+.|++++|.+.+. + .+..+++|+.|++++
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS------EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSG 227 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC------TTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTT
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccC------hhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcC
Confidence 99998887788999999999999984 444322 24688899999999999999854 3 477889999999999
Q ss_pred ccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccC
Q 045822 160 NALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLC 235 (331)
Q Consensus 160 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 235 (331)
|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 9999888889999999999999999998777888999999999999999999777778889999999999999864
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=6.9e-28 Score=204.42 Aligned_cols=281 Identities=21% Similarity=0.208 Sum_probs=217.2
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecc
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNN 82 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (331)
+..+++++.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 344555555554445556778899999999999998888899999999999999999974443 889999999999999
Q ss_pred eeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccC
Q 045822 83 LLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNAL 162 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 162 (331)
.+.... ..++|++|++++|.+...+ ...+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~---------~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVS---------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEE---------ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred cccccc-----CCCCcCEEECCCCccCCcC---------ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 987542 3489999999999887532 23368899999999999977777888899999999999999
Q ss_pred CCcccccc-cCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcccccc
Q 045822 163 SGSISNEI-TNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKE 241 (331)
Q Consensus 163 ~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 241 (331)
....+..+ ..+++|++|++++|.+.... ....+++|++|++++|.+.. .+..+..+++|++|++++|.+.. .+..
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~ 232 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKA 232 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred CcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhH
Confidence 87655555 47899999999999987442 23358899999999999984 44558889999999999999975 4556
Q ss_pred ccCCCcccEEEccCCccc-cccchhhhhccccccEEEccccc-ccccCCCCCCCCCcceEEEeccc
Q 045822 242 IGDMKSLSILDLSSNKLN-GSIPLSLTNLTNSLKVLSLSSNN-IVGEIPLGHGKFSSLIQLILTNN 305 (331)
Q Consensus 242 ~~~~~~L~~L~ls~~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~ 305 (331)
+..+++|+.|++++|.+. +..+..+.... +|+.++++++. +.+..+. -+..+.+....-..|
T Consensus 233 ~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~-~L~~l~l~~~~~l~~~~~~-~~~~~~~~~~~~~cc 296 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQTVKKLTGQNEE-ECTVPTLGHYGAYCC 296 (317)
T ss_dssp CCCCTTCCEEECTTCCCBHHHHHHHHHTCH-HHHHHHHHHHHHHHSSSSC-CCSSTTCEEETTEEE
T ss_pred hhcCCCCCEEEccCCCccCcCHHHHHhccc-cceEEECCCchhccCCchh-ccCCCceecccceee
Confidence 788999999999999998 44444444444 59999999774 4433333 233344444333334
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.4e-26 Score=202.80 Aligned_cols=227 Identities=25% Similarity=0.256 Sum_probs=202.5
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
++++|+|++|.++...+..|.++++|++|++++|.+..+.+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 47899999999998888899999999999999999998888999999999999999999986666689999999999999
Q ss_pred cceeeecCcccccCCCCCCeEEeecC-cccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeec
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNN-TLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFST 159 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 159 (331)
+|.+....+..|..+++|++|+++++ .+..++ +..+..+++|+.|++++|.+.. ++ .+..+++|+.|++++
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS------EGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSG 216 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC------TTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTT
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeC------cchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCC
Confidence 99998887888999999999999984 343222 2468889999999999999984 33 477889999999999
Q ss_pred ccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccC
Q 045822 160 NALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLC 235 (331)
Q Consensus 160 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 235 (331)
|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9999877889999999999999999998777888999999999999999999777778889999999999999863
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.1e-25 Score=199.58 Aligned_cols=258 Identities=32% Similarity=0.375 Sum_probs=109.7
Q ss_pred CccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEee
Q 045822 25 HLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLY 104 (331)
Q Consensus 25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (331)
+|++|++++|.+.. .+ .++++++|++|++++|.+.. +|..+ .+|++|++++|.+... + .+..+++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSC-C-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcC-c-cccCCCCCCEEECC
Confidence 44444444444443 22 24444444444444444431 22211 2444444444444331 2 24445555555555
Q ss_pred cCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCC
Q 045822 105 NNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSEN 184 (331)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 184 (331)
+|.+..++. ..++|+.|++++|.+. .++ .+..+++|+++++++|.+.. .+. ..++|++|++++|
T Consensus 204 ~N~l~~l~~----------~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N 267 (454)
T 1jl5_A 204 NNSLKKLPD----------LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDN 267 (454)
T ss_dssp SSCCSSCCC----------CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSS
T ss_pred CCcCCcCCC----------CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCC
Confidence 554443221 0124555555555544 233 24455555555555555442 111 1244555555555
Q ss_pred cCCCCcchhhhCCCCccEEEeecCcCCC--CCCcc-------------cccc-CCccEEEccCCccCccccccccCCCcc
Q 045822 185 TLDGSIPLALGNLIKLVVLDLSINKLSG--SIPLS-------------FASL-TSLTTLYLYENSLCDSIQKEIGDMKSL 248 (331)
Q Consensus 185 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~-------------~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L 248 (331)
.+... +. .+++|++|++++|.+.+ ..+.. +..+ ++|++|++++|.+.+. +. .+++|
T Consensus 268 ~l~~l-~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L 339 (454)
T 1jl5_A 268 YLTDL-PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PA---LPPRL 339 (454)
T ss_dssp CCSCC-CC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC-CC---CCTTC
T ss_pred ccccc-Cc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccc-cc---cCCcC
Confidence 44321 11 12344555555444432 11100 1112 3666666666666542 11 24677
Q ss_pred cEEEccCCccccccchhhhhccccccEEEcccccccc--cCCCCCCCC-------------CcceEEEeccceecc--cc
Q 045822 249 SILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVG--EIPLGHGKF-------------SSLIQLILTNNELSR--QL 311 (331)
Q Consensus 249 ~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~~~~--~~ 311 (331)
+.|++++|.+. .++. ..++|+.|++++|++.+ .+|..+.++ ++|+.|++++|++++ .+
T Consensus 340 ~~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i 414 (454)
T 1jl5_A 340 ERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI 414 (454)
T ss_dssp CEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------
T ss_pred CEEECCCCccc-cccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccc
Confidence 77777777776 4444 23458888888887776 566666655 678888888888776 67
Q ss_pred ChhhHHhh
Q 045822 312 SPELGSLI 319 (331)
Q Consensus 312 p~~~~~~~ 319 (331)
|+++..+.
T Consensus 415 P~sl~~L~ 422 (454)
T 1jl5_A 415 PESVEDLR 422 (454)
T ss_dssp --------
T ss_pred hhhHhhee
Confidence 77666554
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=6.4e-27 Score=198.02 Aligned_cols=249 Identities=22% Similarity=0.203 Sum_probs=171.7
Q ss_pred hccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeee-cCccccc-------CCCCCCeEEeecCcccCCCCcc
Q 045822 44 IGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFG-LIPNEVG-------SLKSLSDLRLYNNTLKNMNALS 115 (331)
Q Consensus 44 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~ 115 (331)
++..++|+++++++|.+ .+|..+... |+.|+++++.+.. ..+..+. .+++|++|++++|.+..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----- 109 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG----- 109 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS-----
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc-----
Confidence 34556677777777766 445444433 6677777766632 2333332 56777777777776653
Q ss_pred CCchhhh--hCCcCCcEEEccccccCCcccccccCC-----CCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCC
Q 045822 116 GSIPDEI--RNLKSLLNLQLDNNTLNGSIPLSLGNL-----TNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDG 188 (331)
Q Consensus 116 ~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 188 (331)
.+|..+ ..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 110 -~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 110 -TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp -CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred -hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 223333 6677777777777777654 5555544 778888888887776666777778888888888877543
Q ss_pred C--cchhh--hCCCCccEEEeecCcCCCC---CCccccccCCccEEEccCCccCccc-cccccCCCcccEEEccCCcccc
Q 045822 189 S--IPLAL--GNLIKLVVLDLSINKLSGS---IPLSFASLTSLTTLYLYENSLCDSI-QKEIGDMKSLSILDLSSNKLNG 260 (331)
Q Consensus 189 ~--~~~~~--~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ls~~~~~~ 260 (331)
. .+..+ ..+++|++|++++|.+... ....+..+++|++|++++|.+.+.. ...+..+++|+.|++++|.++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 2 12223 6778888888888887731 1233456788899999988887755 345566789999999999888
Q ss_pred ccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceecc
Q 045822 261 SIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSR 309 (331)
Q Consensus 261 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 309 (331)
.++..+. ++|++|++++|++.+. |. +..+++|++|++++|++++
T Consensus 267 ~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 QVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6666554 4599999999999854 54 8889999999999998874
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.8e-26 Score=193.70 Aligned_cols=259 Identities=20% Similarity=0.167 Sum_probs=145.1
Q ss_pred ccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeec
Q 045822 26 LKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYN 105 (331)
Q Consensus 26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 105 (331)
++..+++.+.+.......+..+++|++|++++|.+....+..+.++++|++|++++|.+....+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4444555555554444555667788888888888876666677888888888888887765433 77778888888888
Q ss_pred CcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCc
Q 045822 106 NTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENT 185 (331)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 185 (331)
|.++.++ ..++|+.|++++|.+.+..+. .+++|+++++++|.+....+..+..+++|++|++++|.
T Consensus 90 n~l~~l~-----------~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 90 NYVQELL-----------VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp SEEEEEE-----------ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred Ccccccc-----------CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 7665321 236677777777766643322 24556666666666655444455555566666666665
Q ss_pred CCCCcchhh-hCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccch
Q 045822 186 LDGSIPLAL-GNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPL 264 (331)
Q Consensus 186 ~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~ 264 (331)
+....+..+ ..+++|++|++++|.+... + ....+++|++|++++|.+.+... .+..+++|+.|++++|.+. .++.
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECT
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhh
Confidence 554333333 2445555555555555422 1 11124555555555555543222 2444555555555555554 3333
Q ss_pred hhhhccccccEEEccccccc-ccCCCCCCCCCcceEEEeccc
Q 045822 265 SLTNLTNSLKVLSLSSNNIV-GEIPLGHGKFSSLIQLILTNN 305 (331)
Q Consensus 265 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 305 (331)
.+.... +|+.|++++|++. +..+..+..++.|+.+++.++
T Consensus 232 ~~~~l~-~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 232 ALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TCCCCT-TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhhcCC-CCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 332222 2555555555554 334444444555555555533
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3.1e-24 Score=190.24 Aligned_cols=234 Identities=29% Similarity=0.346 Sum_probs=137.8
Q ss_pred cCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcC
Q 045822 48 SSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKS 127 (331)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 127 (331)
++|++|++++|.+.. +| .+.++++|++|++++|.+.. .|.. .++|++|++++|.++.+ | .+..+++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-------~-~~~~l~~ 196 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-------P-ELQNLPF 196 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-------C-CCTTCTT
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-------c-cccCCCC
Confidence 355555555555552 33 35555566666666555543 2221 23566666665555432 2 3556666
Q ss_pred CcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeec
Q 045822 128 LLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSI 207 (331)
Q Consensus 128 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 207 (331)
|+.|++++|.+.+ .+.. .++|+.+++++|.+. ..+ .+..+++|++|++++|.+... +. .+++|++|++++
T Consensus 197 L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~ 266 (454)
T 1jl5_A 197 LTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRD 266 (454)
T ss_dssp CCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCS
T ss_pred CCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCC
Confidence 6666666666653 2221 246677777776665 333 366777777777777776532 22 236777777777
Q ss_pred CcCCCCCCccccccCCccEEEccCCccCcc--cccc-------------ccCC-CcccEEEccCCccccccchhhhhccc
Q 045822 208 NKLSGSIPLSFASLTSLTTLYLYENSLCDS--IQKE-------------IGDM-KSLSILDLSSNKLNGSIPLSLTNLTN 271 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~-------------~~~~-~~L~~L~ls~~~~~~~~~~~~~~~~~ 271 (331)
|.+.+ .|.. +++|++|++++|.+.+. .+.. +..+ ++|+.|++++|.+.+ ++.. .+
T Consensus 267 N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~----~~ 337 (454)
T 1jl5_A 267 NYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL----PP 337 (454)
T ss_dssp SCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC----CT
T ss_pred Ccccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc----CC
Confidence 77663 3322 25677777777766541 1110 1122 467777777777663 3322 34
Q ss_pred cccEEEcccccccccCCCCCCCCCcceEEEeccceecc--ccChhhHHh
Q 045822 272 SLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSR--QLSPELGSL 318 (331)
Q Consensus 272 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~p~~~~~~ 318 (331)
+|+.|++++|.+. .++. .+++|++|++++|++++ .+|.++..+
T Consensus 338 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 338 RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred cCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 5888888888877 4554 36789999999999987 778777654
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.1e-26 Score=193.08 Aligned_cols=249 Identities=22% Similarity=0.214 Sum_probs=197.2
Q ss_pred cCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCccc-cccccccc-------CCCcccEEEeecceeeecCccc
Q 045822 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLK-CSIPLSLG-------NLTSLIYIGISNNLLFGLIPNE 91 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~ 91 (331)
+...++|++|+++++.+ ..|..+... |++|++++|.+. ..++..+. ++++|++|++++|.+....|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45667788899999988 445555443 899999999884 23444444 7899999999999998777776
Q ss_pred c--cCCCCCCeEEeecCcccCCCCccCCchhhhhCC-----cCCcEEEccccccCCcccccccCCCCCcEEEeecccCCC
Q 045822 92 V--GSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNL-----KSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSG 164 (331)
Q Consensus 92 ~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 164 (331)
+ ..+++|++|++++|.+... |..+..+ ++|++|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-------SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred HHHhcCCCccEEEccCCCCcch-------hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 5 8899999999999988854 3445555 899999999999998777889999999999999998764
Q ss_pred c--ccccc--cCCCCCCEEEccCCcCCCC---cchhhhCCCCccEEEeecCcCCCCCC-ccccccCCccEEEccCCccCc
Q 045822 165 S--ISNEI--TNLRSISDLQLSENTLDGS---IPLALGNLIKLVVLDLSINKLSGSIP-LSFASLTSLTTLYLYENSLCD 236 (331)
Q Consensus 165 ~--~~~~l--~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 236 (331)
. .+..+ ..+++|++|++++|.+... ....+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+..
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh
Confidence 3 22233 7889999999999998732 22445678999999999999986553 456678999999999999974
Q ss_pred cccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccc
Q 045822 237 SIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVG 285 (331)
Q Consensus 237 ~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 285 (331)
.+..+. ++|+.|++++|++++. +. +.... +|++|++++|++++
T Consensus 268 -ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~-~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 268 -VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP-QVGNLSLKGNPFLD 310 (312)
T ss_dssp -CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC-EEEEEECTTCTTTC
T ss_pred -hhhhcc--CCceEEECCCCCCCCC-hh-HhhCC-CCCEEeccCCCCCC
Confidence 444444 8999999999999854 44 55554 59999999999875
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.6e-25 Score=200.45 Aligned_cols=241 Identities=23% Similarity=0.247 Sum_probs=197.5
Q ss_pred cCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCC
Q 045822 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLS 99 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 99 (331)
...+++|++|++++|.+....+..|..+++|++|++++|.+....+ +..+++|++|++++|.+.... ..++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 3455699999999999998888999999999999999999975444 889999999999999987543 238999
Q ss_pred eEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCccccccc-CCCCCCE
Q 045822 100 DLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEIT-NLRSISD 178 (331)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~ 178 (331)
+|++++|.+..++ ...+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+. .+++|++
T Consensus 103 ~L~L~~N~l~~~~---------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 103 TLHAANNNISRVS---------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp EEECCSSCCCCEE---------ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred EEECcCCcCCCCC---------ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 9999999888542 13468899999999999987788888999999999999999876666665 7899999
Q ss_pred EEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCcc
Q 045822 179 LQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKL 258 (331)
Q Consensus 179 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~ 258 (331)
|++++|.+... .....+++|+.|++++|.+.+ .+..+..+++|+.|++++|.+.+ .+..+..+++|+.|++++|.+
T Consensus 174 L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 174 LNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp EECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred EecCCCccccc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 99999998744 223468999999999999985 44458889999999999999976 455578899999999999998
Q ss_pred c-cccchhhhhccccccEEEcccc
Q 045822 259 N-GSIPLSLTNLTNSLKVLSLSSN 281 (331)
Q Consensus 259 ~-~~~~~~~~~~~~~L~~L~l~~~ 281 (331)
. +..+..+.... +++.++++.+
T Consensus 250 ~c~~~~~~~~~l~-~L~~l~~~~~ 272 (487)
T 3oja_A 250 HCGTLRDFFSKNQ-RVQTVAKQTV 272 (487)
T ss_dssp CHHHHHHHHTTCH-HHHHHHHHHH
T ss_pred cCcchHHHHHhCC-CCcEEecccc
Confidence 8 33444444443 4777777644
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.2e-25 Score=195.44 Aligned_cols=225 Identities=24% Similarity=0.226 Sum_probs=131.6
Q ss_pred CcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCc
Q 045822 47 LSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLK 126 (331)
Q Consensus 47 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 126 (331)
+++|++|++++|.+....+..|..+++|++|++++|.+....+ +..+++|++|++++|.+..++ ..+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----------~~~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----------VGP 99 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----------ECT
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----------CCC
Confidence 3467777777776665555566666777777776666654433 556666666666666554221 114
Q ss_pred CCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEee
Q 045822 127 SLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLS 206 (331)
Q Consensus 127 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 206 (331)
+|+.|++++|.+.. ..+. .+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 100 ~L~~L~L~~N~l~~------------------------~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 100 SIETLHAANNNISR------------------------VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp TCCEEECCSSCCCC------------------------EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred CcCEEECcCCcCCC------------------------CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 45555555554443 2221 23455556666655554444455556666666666
Q ss_pred cCcCCCCCCcccc-ccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccc
Q 045822 207 INKLSGSIPLSFA-SLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVG 285 (331)
Q Consensus 207 ~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 285 (331)
+|.+.+..+..+. .+++|++|++++|.+.+... ...+++|+.|++++|.+++ ++..+.... +|+.|++++|.+.
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~-~L~~L~Ls~N~l~- 227 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLV- 227 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCC-
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCC-CccEEEecCCcCc-
Confidence 6666654444443 56667777777766654422 2346777777777777763 444444444 3777777777776
Q ss_pred cCCCCCCCCCcceEEEeccceec-cccChhhH
Q 045822 286 EIPLGHGKFSSLIQLILTNNELS-RQLSPELG 316 (331)
Q Consensus 286 ~~~~~~~~~~~L~~L~l~~~~~~-~~~p~~~~ 316 (331)
.+|..+..+++|+.|++++|++. +.+|..+.
T Consensus 228 ~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 35666667777777777777776 44444443
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=3.4e-26 Score=210.44 Aligned_cols=309 Identities=14% Similarity=0.071 Sum_probs=154.7
Q ss_pred ccEEeccccc-ccC-CCCcccCCCCCccEEEeccCcccCC----ChhhhccCcCCCeeeccCCccc----ccccccccCC
Q 045822 2 LKFLGLSFNQ-FYG-SIPPEIGHLTHLKLLSFSKNQLSGL----IPHEIGRLSSLNGLSLYSNFLK----CSIPLSLGNL 71 (331)
Q Consensus 2 L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l 71 (331)
|++|++++|. ++. .+.....++++|++|++++|.+.+. .+..+..+++|++|++++|.+. ..++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6666666664 221 1222233566666666666655433 2223345566666666666554 1233334455
Q ss_pred CcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCC--------------------CCccCCchhhhhCCcCCcEE
Q 045822 72 TSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNM--------------------NALSGSIPDEIRNLKSLLNL 131 (331)
Q Consensus 72 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------------------~~~~~~~~~~l~~~~~L~~L 131 (331)
++|++|++++|.+.. .+..+..+++|+++++........ ......++..+..+++|++|
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 666666666655443 233344444455444432110000 00011334455556666666
Q ss_pred EccccccCCccc-ccccCCCCCcEEEeecc-----------------------------------cCCCc-ccccccCCC
Q 045822 132 QLDNNTLNGSIP-LSLGNLTNLTTLYFSTN-----------------------------------ALSGS-ISNEITNLR 174 (331)
Q Consensus 132 ~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~-----------------------------------~~~~~-~~~~l~~~~ 174 (331)
++++|.+.+... ..+..+++|+.|++.++ .++.. .......++
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 666665432221 12334455555555421 22211 111122344
Q ss_pred CCCEEEccCCcCCCCcchhhhC-CCCccEEEee----cCcCCCC-----CCccccccCCccEEEccCCc--cCccccccc
Q 045822 175 SISDLQLSENTLDGSIPLALGN-LIKLVVLDLS----INKLSGS-----IPLSFASLTSLTTLYLYENS--LCDSIQKEI 242 (331)
Q Consensus 175 ~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~ 242 (331)
+|++|++..+.+.+.....+.. +++|++|+++ .+.+++. .+..+..+++|++|+++.|. +.+.....+
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 5555555444443322233332 5566666665 2233321 11224456677777775443 333323222
Q ss_pred -cCCCcccEEEccCCccccccchhhhhccccccEEEccccccccc-CCCCCCCCCcceEEEeccceecccc
Q 045822 243 -GDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGE-IPLGHGKFSSLIQLILTNNELSRQL 311 (331)
Q Consensus 243 -~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~ 311 (331)
..+++|+.|++++|.+++.....+....++|+.|++++|++++. ++.....+++|++|++++|++++..
T Consensus 459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 24778888888888877655444544445688888888886543 3333456788888888888877543
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=9e-24 Score=175.65 Aligned_cols=220 Identities=26% Similarity=0.267 Sum_probs=180.4
Q ss_pred cccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeee
Q 045822 7 LSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFG 86 (331)
Q Consensus 7 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 86 (331)
-.+..++ .+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+....+..+.++++|++|++++|.+..
T Consensus 14 c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 14 CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp CTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3344444 3444343 579999999999988877789999999999999999986666789999999999999999988
Q ss_pred cCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCc-ccccccCCCCCcEEEeecccCCCc
Q 045822 87 LIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGS-IPLSLGNLTNLTTLYFSTNALSGS 165 (331)
Q Consensus 87 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~ 165 (331)
..+..+.++++|++|++.+|.+...+. ..+..+++|++|++++|.+... .+..+..+++|+++++++|.++..
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTT------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cChhhhcCCccccEEECCCCCccccCc------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 877889999999999999998875432 3578899999999999998864 477889999999999999998876
Q ss_pred ccccccCCCCCC----EEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCc
Q 045822 166 ISNEITNLRSIS----DLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCD 236 (331)
Q Consensus 166 ~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 236 (331)
.+..+..++.++ ++++++|.+....+..+. ..+|++|++++|.+....+..+..+++|++|++++|++..
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 666666666666 899999998755444443 4589999999999997666677899999999999999863
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.5e-23 Score=172.07 Aligned_cols=224 Identities=23% Similarity=0.233 Sum_probs=184.8
Q ss_pred EEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcc
Q 045822 29 LSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTL 108 (331)
Q Consensus 29 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 108 (331)
.+..+..+.. .|..+. ++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~~-ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSS-CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccc-cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 4444444543 333332 4799999999999866666899999999999999999888777899999999999999988
Q ss_pred cCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCc-ccccccCCCCCCEEEccCCcCC
Q 045822 109 KNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGS-ISNEITNLRSISDLQLSENTLD 187 (331)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 187 (331)
...+ +..+..+++|++|++.+|.+....+..+..+++|+++++++|.+... .+..+..+++|++|++++|.+.
T Consensus 89 ~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 89 QSLA------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CEEC------TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CccC------hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 7532 35688899999999999999877666788999999999999998863 5788999999999999999988
Q ss_pred CCcchhhhCCCCcc----EEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCcccccc
Q 045822 188 GSIPLALGNLIKLV----VLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSI 262 (331)
Q Consensus 188 ~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~ 262 (331)
...+..+..+++++ .+++++|.+....+..+. ..+|++|++++|.+.+.....+..+++|+.|++++|++....
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 66666666666666 899999999855554444 458999999999998877777889999999999999998554
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=1.4e-25 Score=206.48 Aligned_cols=301 Identities=12% Similarity=0.043 Sum_probs=194.5
Q ss_pred CccEEecccccccCC----CCcccCCCCCccEEEeccCcccCC----ChhhhccCcCCCeeeccCCcccc----------
Q 045822 1 MLKFLGLSFNQFYGS----IPPEIGHLTHLKLLSFSKNQLSGL----IPHEIGRLSSLNGLSLYSNFLKC---------- 62 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~---------- 62 (331)
+|++|+|++|.+++. +......+++|++|+++++.+..+ .+..+.++++|++|++++|.+..
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~ 244 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTT
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhH
Confidence 478888888877543 222345677777777777766522 23334566777777777765431
Q ss_pred ---------------------------------------cccccccCCCcccEEEeecceeeecCc-ccccCCCCCCeEE
Q 045822 63 ---------------------------------------SIPLSLGNLTSLIYIGISNNLLFGLIP-NEVGSLKSLSDLR 102 (331)
Q Consensus 63 ---------------------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 102 (331)
.++..+..+++|++|++++|.+..... ..+..+++|++|+
T Consensus 245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred HHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 122233445566666666655432221 2245566666666
Q ss_pred eecCcccCCCCccCCchhhhhCCcCCcEEEccc-----------cccCCcccc-cccCCCCCcEEEeecccCCCcccccc
Q 045822 103 LYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDN-----------NTLNGSIPL-SLGNLTNLTTLYFSTNALSGSISNEI 170 (331)
Q Consensus 103 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~l 170 (331)
+.+ .+.+ ..++.....+++|++|++.+ +.+.+.... ....+++|++|++..+.+++.....+
T Consensus 325 L~~-~~~~-----~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 325 TRN-VIGD-----RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp EEG-GGHH-----HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred ccC-ccCH-----HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 662 2221 12233446678888888883 334322222 23458999999998888876666666
Q ss_pred cC-CCCCCEEEcc----CCcCCCC-----cchhhhCCCCccEEEeecCc--CCCCCCccc-cccCCccEEEccCCccCcc
Q 045822 171 TN-LRSISDLQLS----ENTLDGS-----IPLALGNLIKLVVLDLSINK--LSGSIPLSF-ASLTSLTTLYLYENSLCDS 237 (331)
Q Consensus 171 ~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~ 237 (331)
.. +++|++|++. .+.+.+. ....+..+++|++|+++.|. +.+.....+ ..+++|++|++++|.+++.
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence 55 8999999997 3445432 23346678999999998654 554333333 3489999999999998764
Q ss_pred c-cccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCC-CCCCcceEEEecccee
Q 045822 238 I-QKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGH-GKFSSLIQLILTNNEL 307 (331)
Q Consensus 238 ~-~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 307 (331)
. ...+..+++|+.|++++|.+++.....+....++|+.|++++|++++.....+ ..+|.+....+..++-
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~~ 550 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRV 550 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC--
T ss_pred HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCccc
Confidence 3 34457899999999999998866666665555679999999999986655555 4578888887777643
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.4e-22 Score=167.82 Aligned_cols=202 Identities=28% Similarity=0.308 Sum_probs=149.5
Q ss_pred CccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEee
Q 045822 25 HLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLY 104 (331)
Q Consensus 25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (331)
..++++++++.+..+ |..+. +++++|++++|.+....+..+.++++|++|+++++.+....+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~i-p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSC-CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCcc-CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 466777777777643 33222 467778888777775555567777888888887777776655666777888888888
Q ss_pred cCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCC
Q 045822 105 NNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSEN 184 (331)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 184 (331)
+|.+..++ +..+..+++|+.|++++|.+....+..|..+++|++|++++|.+.......+..+++|++|++++|
T Consensus 94 ~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 94 DNKLQALP------IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp SSCCCCCC------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCcCC------HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 77776432 245667778888888888877666666777888888888888877666666778888888888888
Q ss_pred cCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccC
Q 045822 185 TLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLC 235 (331)
Q Consensus 185 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 235 (331)
.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 887666666778888888888888888666666778888889999888764
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.7e-22 Score=167.32 Aligned_cols=204 Identities=25% Similarity=0.261 Sum_probs=174.5
Q ss_pred CCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCC
Q 045822 49 SLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSL 128 (331)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L 128 (331)
..++++++++.+. .+|..+. +++++|+++++.+....+..+..+++|++|++++|.++.++ +..+..+++|
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~------~~~~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP------AGIFKELKNL 87 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC------TTTTSSCTTC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC------hhhhcCCCCC
Confidence 5788999998887 5666554 68999999999998777778999999999999999887543 2456788999
Q ss_pred cEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecC
Q 045822 129 LNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSIN 208 (331)
Q Consensus 129 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 208 (331)
++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 99999999998777777888999999999999998777777889999999999999988766677888999999999999
Q ss_pred cCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccc
Q 045822 209 KLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGS 261 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~ 261 (331)
.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|++...
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 99877677788899999999999999877777788899999999999987643
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.8e-23 Score=173.27 Aligned_cols=227 Identities=24% Similarity=0.261 Sum_probs=154.2
Q ss_pred CCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCC
Q 045822 49 SLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSL 128 (331)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L 128 (331)
.+..+.+.++.+... .....+++|+.|+++++.+... ..+..+++|++|++++|.+..+ ..+..+++|
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L 87 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--------SALKELTNL 87 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--------GGGTTCTTC
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--------hhhcCCCCC
Confidence 445566666555422 3345677888888888776543 3467788888888888876642 356777788
Q ss_pred cEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecC
Q 045822 129 LNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSIN 208 (331)
Q Consensus 129 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 208 (331)
++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 88 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC
Confidence 88888888777666656677777888888777777655556677777777777777776555555667777777777777
Q ss_pred cCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCC
Q 045822 209 KLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIP 288 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 288 (331)
.+.+..+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+.+..+ +++.++++.|.+.+.+|
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~--------~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP--------GIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT--------TTHHHHHHHHHTGGGBB
T ss_pred CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc--------HHHHHHHHHHhCCCccc
Confidence 7775555556677777777777777766666666677777777777776653321 36666666666666666
Q ss_pred CCCCCCC
Q 045822 289 LGHGKFS 295 (331)
Q Consensus 289 ~~~~~~~ 295 (331)
..++.++
T Consensus 240 ~~~~~~~ 246 (272)
T 3rfs_A 240 NSAGSVA 246 (272)
T ss_dssp CTTSCBC
T ss_pred CcccccC
Confidence 6655443
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.6e-23 Score=173.55 Aligned_cols=210 Identities=24% Similarity=0.268 Sum_probs=131.7
Q ss_pred hccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhh
Q 045822 44 IGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIR 123 (331)
Q Consensus 44 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 123 (331)
...+++|+.|.+.++.+.. ...+..+++|++|++++|.+... ..+..+++|++|++++|.++.++ +..+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~------~~~~~ 106 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLP------NGVFD 106 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCC------TTTTT
T ss_pred cccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccC------hhHhc
Confidence 3455667777777766652 23456667777777777666542 35666677777777776665322 23456
Q ss_pred CCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEE
Q 045822 124 NLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVL 203 (331)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 203 (331)
.+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 66677777777776665555556666677777777776665555556666677777777776665555556666677777
Q ss_pred EeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhcc
Q 045822 204 DLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLT 270 (331)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~ 270 (331)
++++|.+.+..+..+..+++|++|++++|.+. +.+++|+.++++.|.+.+.+|..+....
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 77777766555555666677777777766553 2356666666666666666665554443
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=5.1e-25 Score=192.02 Aligned_cols=250 Identities=17% Similarity=0.181 Sum_probs=133.4
Q ss_pred ChhhhccCcCCCeeeccCCccccc----ccccccCCCcccEEEeecceee---ecCccc-------ccCCCCCCeEEeec
Q 045822 40 IPHEIGRLSSLNGLSLYSNFLKCS----IPLSLGNLTSLIYIGISNNLLF---GLIPNE-------VGSLKSLSDLRLYN 105 (331)
Q Consensus 40 ~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~---~~~~~~-------~~~~~~L~~L~l~~ 105 (331)
.+..+..+++|++|++++|.+... ++..+..+++|++|++++|.+. ...|.. +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 345556667777777777766543 2233556667777777665322 122222 24556666666666
Q ss_pred CcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCC---------CCC
Q 045822 106 NTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNL---------RSI 176 (331)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~---------~~L 176 (331)
|.+...+. ..++..+..+++|+.|++++|.+....+..+.. .+..+ ++|
T Consensus 104 n~l~~~~~--~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 104 NAFGPTAQ--EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAKNAPPL 161 (386)
T ss_dssp CCCCTTTH--HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHHTCCCC
T ss_pred CcCCHHHH--HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcccCCCC
Confidence 55543110 013344555555555555555543222211111 11111 556
Q ss_pred CEEEccCCcCCCC-cc---hhhhCCCCccEEEeecCcCCCC-----CCccccccCCccEEEccCCccC----cccccccc
Q 045822 177 SDLQLSENTLDGS-IP---LALGNLIKLVVLDLSINKLSGS-----IPLSFASLTSLTTLYLYENSLC----DSIQKEIG 243 (331)
Q Consensus 177 ~~L~l~~~~~~~~-~~---~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~ 243 (331)
++|++++|.+... .+ ..+..+++|++|++++|.+... .+..+..+++|++|++++|.++ ...+..+.
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 6666666655421 11 2344556666666666665521 2224556667777777777664 23344555
Q ss_pred CCCcccEEEccCCccccccchhhhhc-----cccccEEEcccccccc----cCCCCC-CCCCcceEEEeccceecccc
Q 045822 244 DMKSLSILDLSSNKLNGSIPLSLTNL-----TNSLKVLSLSSNNIVG----EIPLGH-GKFSSLIQLILTNNELSRQL 311 (331)
Q Consensus 244 ~~~~L~~L~ls~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~ 311 (331)
.+++|+.|++++|.+.+.....+... .++|+.|++++|.+.+ .++..+ .++++|+.|++++|++++..
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 66777777777777665422222111 2347777777777765 255555 44677777777777777544
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.8e-24 Score=186.84 Aligned_cols=262 Identities=19% Similarity=0.228 Sum_probs=191.2
Q ss_pred EEecccccccCCCCcccCCCCCccEEEeccCcccCCCh----hhhccCc-CCCeeeccCCcccccccccccCC-----Cc
Q 045822 4 FLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIP----HEIGRLS-SLNGLSLYSNFLKCSIPLSLGNL-----TS 73 (331)
Q Consensus 4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 73 (331)
+..++.+.+++..+..+...++|++|++++|.+....+ .++..++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45778888887777766777779999999999987776 7778888 89999999999986656555553 89
Q ss_pred ccEEEeecceeeecCccc----ccCC-CCCCeEEeecCcccCCCCccCCchhhhhC-CcCCcEEEccccccCCccccc--
Q 045822 74 LIYIGISNNLLFGLIPNE----VGSL-KSLSDLRLYNNTLKNMNALSGSIPDEIRN-LKSLLNLQLDNNTLNGSIPLS-- 145 (331)
Q Consensus 74 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~-- 145 (331)
|++|++++|.+....+.. +..+ ++|++|++++|.+...+.. .+...+.. .++|++|++++|.+.+.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS--EFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH--HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH--HHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 999999999987665554 3444 8999999999988754310 12223444 368999999999887543333
Q ss_pred --ccCCC-CCcEEEeecccCCCcccc----cccCC-CCCCEEEccCCcCCCCc----chhhhC-CCCccEEEeecCcCCC
Q 045822 146 --LGNLT-NLTTLYFSTNALSGSISN----EITNL-RSISDLQLSENTLDGSI----PLALGN-LIKLVVLDLSINKLSG 212 (331)
Q Consensus 146 --~~~~~-~L~~l~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~ 212 (331)
+...+ +|++|++++|.++...+. .+..+ ++|++|++++|.+.+.. +..+.. .++|++|++++|.+.+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 34444 899999999988755543 34445 58999999999886532 334444 4589999999999886
Q ss_pred CCC----ccccccCCccEEEccCCccCcc-------ccccccCCCcccEEEccCCccccccchhhh
Q 045822 213 SIP----LSFASLTSLTTLYLYENSLCDS-------IQKEIGDMKSLSILDLSSNKLNGSIPLSLT 267 (331)
Q Consensus 213 ~~~----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~ 267 (331)
..+ ..+..+++|++|++++|.+.+. ....+..+++|+.|++++|.+.+..+..+.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence 543 3345678999999999984332 234566788999999999998866554443
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.4e-23 Score=179.56 Aligned_cols=254 Identities=18% Similarity=0.215 Sum_probs=147.3
Q ss_pred CccEEEeccCcccCCChhhhccC--cCCCeeeccCCcccccccccccCCCcccEEEeecceeeec-CcccccCCCCCCeE
Q 045822 25 HLKLLSFSKNQLSGLIPHEIGRL--SSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGL-IPNEVGSLKSLSDL 101 (331)
Q Consensus 25 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 101 (331)
.++.++++++.+. +..+..+ ++++.++++++.+....+. +..+++|++|++++|.+... .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777766554 3445555 6777777777776643333 44667777777777766543 45556667777777
Q ss_pred EeecCcccCCCCccCCchhhhhCCcCCcEEEcccc-ccCCc-ccccccCCCCCcEEEeecc-cCCCc-ccccccCCC-CC
Q 045822 102 RLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNN-TLNGS-IPLSLGNLTNLTTLYFSTN-ALSGS-ISNEITNLR-SI 176 (331)
Q Consensus 102 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~l~~~~-~L 176 (331)
++++|.+.. ..+..++.+++|++|++++| .+.+. .+..+..+++|++|++++| .+++. .+..+..++ +|
T Consensus 124 ~L~~~~l~~------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 124 SLEGLRLSD------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp ECTTCBCCH------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred eCcCcccCH------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 777765442 33455666777777777776 44432 3334556667777777766 55532 344455666 67
Q ss_pred CEEEccCCc--CC-CCcchhhhCCCCccEEEeecCc-CCCCCCccccccCCccEEEccCCc-cCccccccccCCCcccEE
Q 045822 177 SDLQLSENT--LD-GSIPLALGNLIKLVVLDLSINK-LSGSIPLSFASLTSLTTLYLYENS-LCDSIQKEIGDMKSLSIL 251 (331)
Q Consensus 177 ~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L 251 (331)
++|++++|. +. ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 777777663 32 2233445566667777777666 444445556666677777776663 333333345556666666
Q ss_pred EccCCccccccchhhhhccccccEEEcccccccccCCCCCC
Q 045822 252 DLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHG 292 (331)
Q Consensus 252 ~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 292 (331)
++++| +.+.....+. .++..|++++|++++..+..+.
T Consensus 278 ~l~~~-i~~~~~~~l~---~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 278 QVFGI-VPDGTLQLLK---EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTS-SCTTCHHHHH---HHSTTSEESCCCSCCTTCSSCS
T ss_pred eccCc-cCHHHHHHHH---hhCcceEEecccCccccCCccc
Confidence 66666 4433332222 1244555666666655554443
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.3e-24 Score=185.95 Aligned_cols=254 Identities=15% Similarity=0.183 Sum_probs=197.7
Q ss_pred ccEEecccccccCCCCcccCCC--CCccEEEeccCcccCCChhhhccCcCCCeeeccCCccccc-ccccccCCCcccEEE
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHL--THLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCS-IPLSLGNLTSLIYIG 78 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ 78 (331)
+++++++++.+. +..+..+ ++++.|+++++.+....+. +..+++|++|++++|.+... ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 578888888766 3445666 8899999999988866555 45789999999999998754 677888999999999
Q ss_pred eecceeeecCcccccCCCCCCeEEeecC-cccCCCCccCCchhhhhCCcCCcEEEcccc-ccCCc-ccccccCCC-CCcE
Q 045822 79 ISNNLLFGLIPNEVGSLKSLSDLRLYNN-TLKNMNALSGSIPDEIRNLKSLLNLQLDNN-TLNGS-IPLSLGNLT-NLTT 154 (331)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~ 154 (331)
+++|.+....+..+..+++|++|++++| .++.. .++..+..+++|++|++++| .+.+. .+..+..++ +|++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 9999988777778889999999999998 45421 24566888999999999999 87753 455577888 9999
Q ss_pred EEeecc--cCC-CcccccccCCCCCCEEEccCCc-CCCCcchhhhCCCCccEEEeecCc-CCCCCCccccccCCccEEEc
Q 045822 155 LYFSTN--ALS-GSISNEITNLRSISDLQLSENT-LDGSIPLALGNLIKLVVLDLSINK-LSGSIPLSFASLTSLTTLYL 229 (331)
Q Consensus 155 l~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l 229 (331)
|++++| .++ ...+..+..+++|++|++++|. +.+.....+..+++|++|++++|. +.......+..+++|++|++
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 999998 454 3445667789999999999998 665666788899999999999995 33333346778999999999
Q ss_pred cCCccCccccccccCCCcccEEEccCCccccccchhhh
Q 045822 230 YENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLT 267 (331)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~ 267 (331)
++| +.+.....+. .+++.|++++|.+++..+..+.
T Consensus 280 ~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 280 FGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred cCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 999 5443333332 3466666899999876665443
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=5.1e-24 Score=183.97 Aligned_cols=228 Identities=19% Similarity=0.168 Sum_probs=123.7
Q ss_pred EEEeccCcccCCChhhhccCcCCCeeeccCCccccccc----ccccCCC-cccEEEeecceeeecCcccccCC-----CC
Q 045822 28 LLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIP----LSLGNLT-SLIYIGISNNLLFGLIPNEVGSL-----KS 97 (331)
Q Consensus 28 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~ 97 (331)
++.++.+.+....+..+...++|++|++++|.+....+ ..+.+++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677777776666666666668888888888875544 5666777 78888888888776655555543 77
Q ss_pred CCeEEeecCcccCCCCccCCchhhhhCC-cCCcEEEccccccCCccccccc----C-CCCCcEEEeecccCCCccc----
Q 045822 98 LSDLRLYNNTLKNMNALSGSIPDEIRNL-KSLLNLQLDNNTLNGSIPLSLG----N-LTNLTTLYFSTNALSGSIS---- 167 (331)
Q Consensus 98 L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~l~l~~~~~~~~~~---- 167 (331)
|++|++++|.+...+.. .+...+..+ ++|+.|++++|.+.+..+..+. . .++|++|++++|.+++...
T Consensus 82 L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSD--ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp CCEEECCSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred ccEEECcCCcCChHHHH--HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 88888888776643210 111234444 6777777777776644433322 2 2456666666665553222
Q ss_pred ccccCCC-CCCEEEccCCcCCCCcchh----hhCC-CCccEEEeecCcCCCCC----Cccccc-cCCccEEEccCCccCc
Q 045822 168 NEITNLR-SISDLQLSENTLDGSIPLA----LGNL-IKLVVLDLSINKLSGSI----PLSFAS-LTSLTTLYLYENSLCD 236 (331)
Q Consensus 168 ~~l~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~~~~ 236 (331)
..+...+ +|++|++++|.+.+..+.. +..+ ++|++|++++|.+.+.. +..+.. .++|++|++++|.+.+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 2223333 5555555555554333222 2222 35555555555544321 112222 2345555555554443
Q ss_pred ccc----ccccCCCcccEEEccCCc
Q 045822 237 SIQ----KEIGDMKSLSILDLSSNK 257 (331)
Q Consensus 237 ~~~----~~~~~~~~L~~L~ls~~~ 257 (331)
... ..+..+++|+.|++++|.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCC
Confidence 222 122334444444444444
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=1.8e-21 Score=177.86 Aligned_cols=246 Identities=26% Similarity=0.317 Sum_probs=196.6
Q ss_pred CccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEee
Q 045822 25 HLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLY 104 (331)
Q Consensus 25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (331)
++++|+++++.+..+ |..+. ++|++|++++|.+. .++. .+++|++|++++|.+... |. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECc
Confidence 589999999999844 44443 79999999999988 4555 578999999999998754 33 67999999999
Q ss_pred cCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCC
Q 045822 105 NNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSEN 184 (331)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 184 (331)
+|.+..++ . .+++|+.|++++|.+.. ++. .+++|++|++++|.+... +. .+++|+.|.+++|
T Consensus 110 ~N~l~~l~-------~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N 171 (622)
T 3g06_A 110 SNPLTHLP-------A---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNN 171 (622)
T ss_dssp SCCCCCCC-------C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSS
T ss_pred CCcCCCCC-------C---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCC
Confidence 99888543 2 46889999999999884 443 248999999999988743 32 3568999999999
Q ss_pred cCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccch
Q 045822 185 TLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPL 264 (331)
Q Consensus 185 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~ 264 (331)
.+... + ..+++|+.|++++|.+.. .+. .+++|+.|++++|.+..... .+++|+.|++++|.+++ ++
T Consensus 172 ~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp- 237 (622)
T 3g06_A 172 QLTSL-P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP- 237 (622)
T ss_dssp CCSCC-C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC-
T ss_pred CCCCC-c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC-
Confidence 98753 3 457899999999999884 433 34799999999999875432 35899999999999984 44
Q ss_pred hhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHhhhh
Q 045822 265 SLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSLIMA 321 (331)
Q Consensus 265 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~ 321 (331)
..+++|+.|++++|.+. .++. .+++|+.|++++|+++ .+|..+.++..+
T Consensus 238 ---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L 286 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE 286 (622)
T ss_dssp ---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred ---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence 33456999999999998 5555 5689999999999999 889988876554
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=3.1e-24 Score=197.48 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=95.3
Q ss_pred CCCCCEEEccCCcCCCCcchhhh-CCCCccEEEee--c----CcCCCCC-----CccccccCCccEEEccCCccCccccc
Q 045822 173 LRSISDLQLSENTLDGSIPLALG-NLIKLVVLDLS--I----NKLSGSI-----PLSFASLTSLTTLYLYENSLCDSIQK 240 (331)
Q Consensus 173 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~ 240 (331)
+++|++|.+..+.+.+.....+. .+++|+.|+++ + +.++... +..+..+++|++|++++ .+.+....
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 55666665555555433333332 46778888887 3 3333111 11245677888888876 55554444
Q ss_pred cccC-CCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCC-CCCCCCcceEEEeccceeccccChhhHHh
Q 045822 241 EIGD-MKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPL-GHGKFSSLIQLILTNNELSRQLSPELGSL 318 (331)
Q Consensus 241 ~~~~-~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~p~~~~~~ 318 (331)
.+.. +++|+.|++++|.+++.....+...+++|+.|++++|++++.... ....+++|+.|++++|+++ +.++..+
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~l 526 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS---FGACKLL 526 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB---HHHHHHH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC---HHHHHHH
Confidence 4443 788999999999987766666644455699999999988644333 3455789999999999885 3444444
Q ss_pred hhhccccc
Q 045822 319 IMAIPDLN 326 (331)
Q Consensus 319 ~~~~~~~~ 326 (331)
....+++.
T Consensus 527 ~~~lp~l~ 534 (594)
T 2p1m_B 527 GQKMPKLN 534 (594)
T ss_dssp HHHCTTEE
T ss_pred HHhCCCCE
Confidence 44445543
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=7.7e-22 Score=164.77 Aligned_cols=202 Identities=25% Similarity=0.241 Sum_probs=126.8
Q ss_pred cCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCC
Q 045822 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLS 99 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 99 (331)
+.+++++++++++++++..+.+. + .++++.|++++|.+....+..+..+++|++|++++|.+....+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 56777788888887777644322 2 2467788888887775566677777777777777777665432 25667777
Q ss_pred eEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEE
Q 045822 100 DLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDL 179 (331)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L 179 (331)
+|++++|.+..+ |..+..+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus 81 ~L~Ls~N~l~~l-------~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 81 TLDLSHNQLQSL-------PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp EEECCSSCCSSC-------CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred EEECCCCcCCcC-------chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 777777766632 3445666667777777776665555556666666666666666665444555556666666
Q ss_pred EccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCcc
Q 045822 180 QLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSL 234 (331)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 234 (331)
++++|.+....+..+..+++|++|++++|.+. ..|..+...+.|+.+++.+|.+
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 66666665444444555566666666666655 3444444445555566555554
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=5.2e-25 Score=191.96 Aligned_cols=263 Identities=19% Similarity=0.196 Sum_probs=184.1
Q ss_pred CCCcccCCCCCccEEEeccCcccCCCh----hhhccCcCCCeeeccCCccc---cccccc-------ccCCCcccEEEee
Q 045822 15 SIPPEIGHLTHLKLLSFSKNQLSGLIP----HEIGRLSSLNGLSLYSNFLK---CSIPLS-------LGNLTSLIYIGIS 80 (331)
Q Consensus 15 ~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~---~~~~~~-------~~~l~~L~~L~l~ 80 (331)
.+...+..+++|++|++++|.+....+ ..+..+++|++|++++|.+. ..+|.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 456667889999999999999876533 34668999999999997543 233433 4789999999999
Q ss_pred cceeee----cCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCC---------cCCcEEEccccccCCc-cc---
Q 045822 81 NNLLFG----LIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNL---------KSLLNLQLDNNTLNGS-IP--- 143 (331)
Q Consensus 81 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~---------~~L~~L~l~~~~~~~~-~~--- 143 (331)
+|.+.. ..+..+..+++|++|++++|.+...+. ..++..+..+ ++|+.|++++|.+... .+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG--AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH--HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH--HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 999876 356678889999999999998753211 0223334444 8899999999888632 22
Q ss_pred ccccCCCCCcEEEeecccCCCc-----ccccccCCCCCCEEEccCCcCC----CCcchhhhCCCCccEEEeecCcCCCC-
Q 045822 144 LSLGNLTNLTTLYFSTNALSGS-----ISNEITNLRSISDLQLSENTLD----GSIPLALGNLIKLVVLDLSINKLSGS- 213 (331)
Q Consensus 144 ~~~~~~~~L~~l~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~- 213 (331)
..+..+++|++|++++|.+... .+..+..+++|++|++++|.+. ...+..+..+++|++|++++|.+...
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 3455678888898888877632 2226677888888888888774 23455677778888888888887743
Q ss_pred ---CCcccc--ccCCccEEEccCCccCc----cccccc-cCCCcccEEEccCCccccccc--hhhhhccccccEEEcc
Q 045822 214 ---IPLSFA--SLTSLTTLYLYENSLCD----SIQKEI-GDMKSLSILDLSSNKLNGSIP--LSLTNLTNSLKVLSLS 279 (331)
Q Consensus 214 ---~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~ls~~~~~~~~~--~~~~~~~~~L~~L~l~ 279 (331)
.+..+. .+++|++|++++|.+.. ..+..+ ..+++|+.|++++|.+++..+ ..+....++++.+.+.
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 233442 27788888888888766 244444 457888888888888876653 4444444445444443
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=9.3e-25 Score=200.97 Aligned_cols=191 Identities=14% Similarity=0.093 Sum_probs=109.7
Q ss_pred CCcCCcEEEccccccCCcccc-cccCCCCCcEEEeecccCCCc-ccccccCCCCCCEEEccC---------CcCCCCcch
Q 045822 124 NLKSLLNLQLDNNTLNGSIPL-SLGNLTNLTTLYFSTNALSGS-ISNEITNLRSISDLQLSE---------NTLDGSIPL 192 (331)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~---------~~~~~~~~~ 192 (331)
.+++|+.|++++|.+.+.... .+..+++|+.|++.+| +... .......+++|++|++.+ +.+.+....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 345555555555543322111 1334555666666555 2211 111222356666666633 122211111
Q ss_pred hh-hCCCCccEEEeecCcCCCCCCcccc-ccCCccEEEcc--C----CccCccc-----cccccCCCcccEEEccCCccc
Q 045822 193 AL-GNLIKLVVLDLSINKLSGSIPLSFA-SLTSLTTLYLY--E----NSLCDSI-----QKEIGDMKSLSILDLSSNKLN 259 (331)
Q Consensus 193 ~~-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~~-----~~~~~~~~~L~~L~ls~~~~~ 259 (331)
.+ ..+++|++|.+..+.++......+. .+++|++|++. + +.+++.. ...+..+++|+.|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 22 2366777776666666543333333 57888888888 3 3343211 12245678899999977 677
Q ss_pred cccchhhhhccccccEEEcccccccccCCCCC-CCCCcceEEEeccceeccccChhhH
Q 045822 260 GSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGH-GKFSSLIQLILTNNELSRQLSPELG 316 (331)
Q Consensus 260 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~p~~~~ 316 (331)
+.....+....++|+.|++++|.+++.....+ ..+++|++|++++|++++..+..+.
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~ 502 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA 502 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH
Confidence 66666666645569999999999875544444 5689999999999999765555443
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.7e-21 Score=162.67 Aligned_cols=204 Identities=27% Similarity=0.256 Sum_probs=175.4
Q ss_pred hccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhh
Q 045822 44 IGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIR 123 (331)
Q Consensus 44 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 123 (331)
+.+++++++++++++.+. .+|..+. +++++|++++|.+....+..+..+++|++|++++|.++.++ . ..
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~-~~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-------V-DG 74 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-------C-CS
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-------C-CC
Confidence 567889999999999988 5666554 68999999999998887888999999999999999888543 2 26
Q ss_pred CCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEE
Q 045822 124 NLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVL 203 (331)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 203 (331)
.+++|+.|++++|.+. .++..+..+++|++|++++|.++...+..+..+++|++|++++|.+....+..|..+++|+.|
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 7899999999999998 566778889999999999999997777889999999999999999987777778899999999
Q ss_pred EeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCcccc
Q 045822 204 DLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNG 260 (331)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~ 260 (331)
++++|++....+..+..+++|++|++++|.+.. .+..+...++|+.+++++|++..
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccC
Confidence 999999996666677889999999999999975 44555667899999999998763
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.1e-21 Score=159.43 Aligned_cols=196 Identities=21% Similarity=0.231 Sum_probs=118.7
Q ss_pred CCCeeeccCCcccccccccccCCCcccEEEeecce-eeecCcccccCCCCCCeEEeec-CcccCCCCccCCchhhhhCCc
Q 045822 49 SLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNL-LFGLIPNEVGSLKSLSDLRLYN-NTLKNMNALSGSIPDEIRNLK 126 (331)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~~~ 126 (331)
+|++|++++|.+....+..+.++++|++|++++|. +....+..|..+++|++|++++ +.++.++ +..+..++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~------~~~f~~l~ 105 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID------PDALKELP 105 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC------TTSEECCT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC------HHHhCCCC
Confidence 55666666666554444455556666666666664 5544444556666666666665 5555322 13455566
Q ss_pred CCcEEEccccccCCcccccccCCCCCc---EEEeecc-cCCCcccccccCCCCCC-EEEccCCcCCCCcchhhhCCCCcc
Q 045822 127 SLLNLQLDNNTLNGSIPLSLGNLTNLT---TLYFSTN-ALSGSISNEITNLRSIS-DLQLSENTLDGSIPLALGNLIKLV 201 (331)
Q Consensus 127 ~L~~L~l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~ 201 (331)
+|+.|++++|.+.. ++. +..+++|+ ++++++| .+.......+..+++|+ +|++++|.+.......+.. ++|+
T Consensus 106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~ 182 (239)
T 2xwt_C 106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLD 182 (239)
T ss_dssp TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEE
T ss_pred CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCC
Confidence 66666666666553 333 55555555 6777766 66554455566677777 7777777665333344444 6777
Q ss_pred EEEeecCc-CCCCCCcccccc-CCccEEEccCCccCccccccccCCCcccEEEccCC
Q 045822 202 VLDLSINK-LSGSIPLSFASL-TSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSN 256 (331)
Q Consensus 202 ~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~ 256 (331)
+|++++|. +....+..|..+ ++|++|++++|.+...... .+++|+.|+++++
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 77777774 664455667777 7888888888777654333 4677777777765
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.7e-21 Score=158.39 Aligned_cols=198 Identities=21% Similarity=0.229 Sum_probs=166.0
Q ss_pred CCccEEEeccCcccCCChhhhccCcCCCeeeccCCc-ccccccccccCCCcccEEEeec-ceeeecCcccccCCCCCCeE
Q 045822 24 THLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNF-LKCSIPLSLGNLTSLIYIGISN-NLLFGLIPNEVGSLKSLSDL 101 (331)
Q Consensus 24 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 101 (331)
+++++|+++++++..+.+..|.++++|++|++++|. +....+..|.++++|++|++++ +.+....+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 379999999999998888889999999999999997 8755666899999999999998 88887777889999999999
Q ss_pred EeecCcccCCCCccCCchhhhhCCcCCc---EEEcccc-ccCCcccccccCCCCCc-EEEeecccCCCcccccccCCCCC
Q 045822 102 RLYNNTLKNMNALSGSIPDEIRNLKSLL---NLQLDNN-TLNGSIPLSLGNLTNLT-TLYFSTNALSGSISNEITNLRSI 176 (331)
Q Consensus 102 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~l~~~~~L 176 (331)
++++|.++.++ . +..+++|+ .|++++| .+....+..|..+++|+ .+++++|.+.......+.. ++|
T Consensus 111 ~l~~n~l~~lp-------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L 181 (239)
T 2xwt_C 111 GIFNTGLKMFP-------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKL 181 (239)
T ss_dssp EEEEECCCSCC-------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEE
T ss_pred eCCCCCCcccc-------c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCC
Confidence 99999888543 3 66677777 9999999 88866666788999999 9999999988544445555 789
Q ss_pred CEEEccCCc-CCCCcchhhhCC-CCccEEEeecCcCCCCCCccccccCCccEEEccCCc
Q 045822 177 SDLQLSENT-LDGSIPLALGNL-IKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENS 233 (331)
Q Consensus 177 ~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 233 (331)
++|++++|. +....+..|..+ ++|+.|++++|.+... +.. .+++|+.|.+.++.
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 999999995 876666778888 9999999999999843 332 57899999998764
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=4.8e-21 Score=161.49 Aligned_cols=191 Identities=27% Similarity=0.442 Sum_probs=92.6
Q ss_pred CcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCc
Q 045822 47 LSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLK 126 (331)
Q Consensus 47 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 126 (331)
+++|++|+++++.+.. ++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--------~~~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--------SAIAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--------GGGTTCT
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--------hhhcCCC
Confidence 4444555555444431 21 34444555555555544443222 44455555555555544422 1244445
Q ss_pred CCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEee
Q 045822 127 SLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLS 206 (331)
Q Consensus 127 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 206 (331)
+|+.|++++|.+.+.. .+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 108 ~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181 (308)
T ss_dssp TCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECC
Confidence 5555555555544321 14445555555555555443221 4455555555555555543222 4555555555555
Q ss_pred cCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccc
Q 045822 207 INKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN 259 (331)
Q Consensus 207 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~ 259 (331)
+|.+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|.+.
T Consensus 182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 182 DNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 555553221 455556666666666554433 2455566666666666554
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=9.1e-21 Score=159.78 Aligned_cols=209 Identities=21% Similarity=0.339 Sum_probs=142.7
Q ss_pred eeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEE
Q 045822 52 GLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNL 131 (331)
Q Consensus 52 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 131 (331)
.+.+..+.+.+. .....+++|++|+++++.+... + .+..+++|++|++++|.+..+ +. +..+++|+.|
T Consensus 23 ~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~-------~~-~~~l~~L~~L 90 (308)
T 1h6u_A 23 KIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL-------AP-LKNLTKITEL 90 (308)
T ss_dssp HHHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-------GG-GTTCCSCCEE
T ss_pred HHHhCCCCcCce--ecHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC-------hh-HccCCCCCEE
Confidence 344444444321 2334677888888888887653 3 577788888888888877743 23 7778888888
Q ss_pred EccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCC
Q 045822 132 QLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLS 211 (331)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (331)
++++|.+.+. ..+..+++|++|++++|.+.... .+..+++|++|++++|.+....+ +..+++|++|++++|.+.
T Consensus 91 ~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 91 ELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 8888887643 25677788888888888776432 36777888888888887764332 667777888888887777
Q ss_pred CCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccc
Q 045822 212 GSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVG 285 (331)
Q Consensus 212 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 285 (331)
+..+ +..+++|++|++++|.+.+... +..+++|+.|++++|.+.+.. .+..+. +|+.|++++|++.+
T Consensus 165 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~-~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTS-NLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCT-TCCEEEEEEEEEEC
T ss_pred CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCC-CCCEEEccCCeeec
Confidence 4322 6677778888888777765433 566777777777777776433 233333 47777777777763
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=4.4e-21 Score=162.01 Aligned_cols=228 Identities=21% Similarity=0.201 Sum_probs=166.3
Q ss_pred ccEEecccccccCCCCc---ccCCCCCccEEEeccCcccCCChhhh--ccCcCCCeeeccCCccccccc----ccccCCC
Q 045822 2 LKFLGLSFNQFYGSIPP---EIGHLTHLKLLSFSKNQLSGLIPHEI--GRLSSLNGLSLYSNFLKCSIP----LSLGNLT 72 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~ 72 (331)
++.+.+.++.+...... .+..+++|++|++++|.+....+..+ ..+++|++|++++|.+....+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 46677777666421110 12244669999999998887777776 788899999999998874333 3445788
Q ss_pred cccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccc---cccCC
Q 045822 73 SLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPL---SLGNL 149 (331)
Q Consensus 73 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~ 149 (331)
+|++|++++|.+....+..+..+++|++|++++|.+...... ..+..+..+++|++|++++|.+...... .+..+
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL--MAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH--HTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh--hHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 999999999998877778888999999999999876421100 0012246788999999999988632211 24677
Q ss_pred CCCcEEEeecccCCCcccccccCC---CCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccE
Q 045822 150 TNLTTLYFSTNALSGSISNEITNL---RSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTT 226 (331)
Q Consensus 150 ~~L~~l~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 226 (331)
++|++|++++|.+....+..+..+ ++|++|++++|.+.. .+..+. ++|++|++++|.+.+. +. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 899999999998887656666555 689999999999873 444442 7899999999998843 33 567899999
Q ss_pred EEccCCccCc
Q 045822 227 LYLYENSLCD 236 (331)
Q Consensus 227 L~l~~~~~~~ 236 (331)
|++++|.+.+
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999998865
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3.1e-20 Score=151.99 Aligned_cols=175 Identities=27% Similarity=0.286 Sum_probs=91.3
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecc
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNN 82 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (331)
++++++++.++ .+|..+. +.+++|+++++.+....+..+.++++|++|++++|.+....+..+.++++|++|++++|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 45555555555 2333232 35666666666665555555555666666666666655444445555566666666665
Q ss_pred eeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccC
Q 045822 83 LLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNAL 162 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 162 (331)
.+....+..+..+++|++|++++|.++.++ +..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLP------SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcC------hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 555444444555555555555555554321 12344455555555555555543333444555555555555555
Q ss_pred CCcccccccCCCCCCEEEccCCcC
Q 045822 163 SGSISNEITNLRSISDLQLSENTL 186 (331)
Q Consensus 163 ~~~~~~~l~~~~~L~~L~l~~~~~ 186 (331)
....+..+..+++|++|++++|.+
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CccCHHHHhCCCCCCEEEeeCCce
Confidence 443334444445555555555544
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=4.2e-21 Score=162.18 Aligned_cols=229 Identities=21% Similarity=0.194 Sum_probs=174.2
Q ss_pred cCCCeeeccCCcccccccc---cccCCCcccEEEeecceeeecCcccc--cCCCCCCeEEeecCcccCCCCccCCch-hh
Q 045822 48 SSLNGLSLYSNFLKCSIPL---SLGNLTSLIYIGISNNLLFGLIPNEV--GSLKSLSDLRLYNNTLKNMNALSGSIP-DE 121 (331)
Q Consensus 48 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~ 121 (331)
..++.+.+.++.+...... .+..+++|++|++++|.+....+..+ ..+++|++|++++|.+..... .++ ..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~---~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS---WLAELQ 140 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---SHHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---hhHHHH
Confidence 4578888888776532111 12235679999999999887777777 889999999999998874211 111 34
Q ss_pred hhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCc--c--cccccCCCCCCEEEccCCcCCCCcch---hh
Q 045822 122 IRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGS--I--SNEITNLRSISDLQLSENTLDGSIPL---AL 194 (331)
Q Consensus 122 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~--~~~l~~~~~L~~L~l~~~~~~~~~~~---~~ 194 (331)
+..+++|+.|++++|.+....+..+..+++|++|++++|.+... . ...+..+++|++|++++|.+...... .+
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 56789999999999999877778899999999999999986532 1 23346788999999999998632221 35
Q ss_pred hCCCCccEEEeecCcCCCCCCcccccc---CCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccc
Q 045822 195 GNLIKLVVLDLSINKLSGSIPLSFASL---TSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTN 271 (331)
Q Consensus 195 ~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~ 271 (331)
..+++|++|++++|.+.+..|..+..+ ++|++|++++|.+... +..+. ++|+.|++++|.+++ ++. +... +
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l-~ 294 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNR-APQ-PDEL-P 294 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCS-CCC-TTSC-C
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCC-Cch-hhhC-C
Confidence 778999999999999997767666655 7999999999999744 44443 899999999999984 232 3333 4
Q ss_pred cccEEEcccccccc
Q 045822 272 SLKVLSLSSNNIVG 285 (331)
Q Consensus 272 ~L~~L~l~~~~~~~ 285 (331)
+|+.|++++|++++
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 59999999999874
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=5.2e-20 Score=150.64 Aligned_cols=134 Identities=26% Similarity=0.252 Sum_probs=65.4
Q ss_pred cCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEe
Q 045822 126 KSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDL 205 (331)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 205 (331)
++++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 34555555555555444444555555555555555555444444445555555555555544444444444455555555
Q ss_pred ecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccc
Q 045822 206 SINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN 259 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~ 259 (331)
++|.+....+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 555444333333444445555555555444433334444444444444444444
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.3e-19 Score=141.64 Aligned_cols=163 Identities=26% Similarity=0.284 Sum_probs=98.2
Q ss_pred cCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEe
Q 045822 126 KSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDL 205 (331)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 205 (331)
+++++|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666666666655444444555666666666666665444444556666666666666665444445566666666666
Q ss_pred ecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccc
Q 045822 206 SINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVG 285 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 285 (331)
++|.+....+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+.+.. ++++.|+++.|++.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~--------~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC--------PGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT--------TTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC--------CCHHHHHHHHHhCCc
Confidence 666666544445566667777777776666555555566667777777766655322 236666666666666
Q ss_pred cCCCCCCCCCc
Q 045822 286 EIPLGHGKFSS 296 (331)
Q Consensus 286 ~~~~~~~~~~~ 296 (331)
.+|..++.++.
T Consensus 180 ~ip~~~~~l~~ 190 (208)
T 2o6s_A 180 VVRNSAGSVAP 190 (208)
T ss_dssp TBBCTTSSBCT
T ss_pred eeeccCccccC
Confidence 66666554433
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.8e-18 Score=148.48 Aligned_cols=240 Identities=16% Similarity=0.154 Sum_probs=172.8
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCccccccc-ccccCCCcccE-EEee
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIP-LSLGNLTSLIY-IGIS 80 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~ 80 (331)
++++-+++.++ .+|..+ .+++++|++++|++..+.+.+|.++++|++|++++|.+...++ ..|.++++++. +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666777777 445444 3579999999999988777889999999999999998754444 46788888776 4556
Q ss_pred cceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccc-cccCCcccccccCCC-CCcEEEee
Q 045822 81 NNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDN-NTLNGSIPLSLGNLT-NLTTLYFS 158 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~l~l~ 158 (331)
.+++....+..|..+++|+++++++|.+...+. ..+....++..+.+.+ +.+....+..|..+. .++.++++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC------CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred CCcccccCchhhhhccccccccccccccccCCc------hhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 678887778889999999999999998876532 2344455677777765 455544444555553 68889999
Q ss_pred cccCCCcccccccCCCCCCEEEccC-CcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcc
Q 045822 159 TNALSGSISNEITNLRSISDLQLSE-NTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDS 237 (331)
Q Consensus 159 ~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 237 (331)
+|.++......+ ...+++++.+.+ +.+.......|..+++|+.|++++|++....+.. +.+|+.|.+.++.-...
T Consensus 163 ~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 163 KNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKK 238 (350)
T ss_dssp SSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCC
T ss_pred cccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCc
Confidence 998875434333 456788998875 5565555567888999999999999988443333 45677777766654443
Q ss_pred ccccccCCCcccEEEccCC
Q 045822 238 IQKEIGDMKSLSILDLSSN 256 (331)
Q Consensus 238 ~~~~~~~~~~L~~L~ls~~ 256 (331)
.+ .+..+++|+.+++.++
T Consensus 239 lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 239 LP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CC-CTTTCCSCCEEECSCH
T ss_pred CC-CchhCcChhhCcCCCC
Confidence 33 4677889999998764
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=2.3e-18 Score=147.80 Aligned_cols=240 Identities=19% Similarity=0.172 Sum_probs=160.0
Q ss_pred cEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeee-cCcccccCCCCCCeE-Eee
Q 045822 27 KLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFG-LIPNEVGSLKSLSDL-RLY 104 (331)
Q Consensus 27 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L-~l~ 104 (331)
++++.++++++.+ |..+ .+++++|++++|.+....+.+|.++++|++|++++|.+.. ..+.+|.++++++++ .+.
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 5678888888744 4433 3578999999999985555678899999999999988644 445667888887764 445
Q ss_pred cCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecc-cCCCcccccccCCC-CCCEEEcc
Q 045822 105 NNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTN-ALSGSISNEITNLR-SISDLQLS 182 (331)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~-~L~~L~l~ 182 (331)
++.+..++ +..+..+++|+.|++++|++....+..+....++..+++.++ .+.......+..+. .++.|+++
T Consensus 89 ~N~l~~l~------~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 89 ANNLLYIN------PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp ETTCCEEC------TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred CCcccccC------chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 57666432 356788888999999888887655555555666777777653 45444444455443 57788888
Q ss_pred CCcCCCCcchhhhCCCCccEEEeec-CcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccc
Q 045822 183 ENTLDGSIPLALGNLIKLVVLDLSI-NKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGS 261 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~ 261 (331)
+|.+.......+ ...+++.+.+.+ +.+....+..|..+++|++|++++|.++..+... +.+|+.|.+.++.-...
T Consensus 163 ~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 163 KNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKK 238 (350)
T ss_dssp SSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCC
T ss_pred cccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCc
Confidence 888764444444 345688888865 4555444456778888888888888876655444 34555555555544434
Q ss_pred cchhhhhccccccEEEcccc
Q 045822 262 IPLSLTNLTNSLKVLSLSSN 281 (331)
Q Consensus 262 ~~~~~~~~~~~L~~L~l~~~ 281 (331)
.| .+.... +|+.+++.++
T Consensus 239 lP-~l~~l~-~L~~l~l~~~ 256 (350)
T 4ay9_X 239 LP-TLEKLV-ALMEASLTYP 256 (350)
T ss_dssp CC-CTTTCC-SCCEEECSCH
T ss_pred CC-CchhCc-ChhhCcCCCC
Confidence 44 233443 4888887653
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=5.2e-19 Score=140.50 Aligned_cols=181 Identities=24% Similarity=0.215 Sum_probs=148.7
Q ss_pred cEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecC
Q 045822 129 LNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSIN 208 (331)
Q Consensus 129 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 208 (331)
+.++..++++. .+|..+ .+++++|+++++.+.......+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666666665 333332 468999999999998777777889999999999999998777777889999999999999
Q ss_pred cCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCC
Q 045822 209 KLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIP 288 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 288 (331)
.+....+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+.+ ++.......++|+.|++++|++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCee----
Confidence 9997666678899999999999999988777778899999999999999984 44443333445999999999765
Q ss_pred CCCCCCCcceEEEeccceeccccChhhHHhhh
Q 045822 289 LGHGKFSSLIQLILTNNELSRQLSPELGSLIM 320 (331)
Q Consensus 289 ~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~~ 320 (331)
+.++.|+.|++..|++++.+|..++.+..
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 35678999999999999999988876654
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=9.1e-18 Score=153.23 Aligned_cols=175 Identities=26% Similarity=0.395 Sum_probs=104.6
Q ss_pred ccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhC
Q 045822 45 GRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRN 124 (331)
Q Consensus 45 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 124 (331)
..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+....+ +..+++|++|++++|.+... ..+..
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--------~~l~~ 107 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--------SSLKD 107 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-C-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------TTSTT
T ss_pred hcCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--------hhhcc
Confidence 455666666666666652 2 245566666666666666654432 56666666666666665532 23555
Q ss_pred CcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEE
Q 045822 125 LKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLD 204 (331)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 204 (331)
+++|+.|++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 108 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 181 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 181 (605)
T ss_dssp CTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence 66666666666666532 2355666666666666666543 455666666666666666654333 56666677777
Q ss_pred eecCcCCCCCCccccccCCccEEEccCCccCcccc
Q 045822 205 LSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQ 239 (331)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 239 (331)
+++|.+.+. ..+..+++|+.|++++|.+...+.
T Consensus 182 Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 182 LSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 766666632 245566667777777666654433
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3.2e-18 Score=142.92 Aligned_cols=171 Identities=26% Similarity=0.426 Sum_probs=84.8
Q ss_pred cCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCC
Q 045822 46 RLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNL 125 (331)
Q Consensus 46 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 125 (331)
.+++|++|++++|.+.. + ..+..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..+
T Consensus 44 ~l~~L~~L~l~~~~i~~-~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--------~~l~~l 111 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--------SSLKDL 111 (291)
T ss_dssp HHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--------GGGTTC
T ss_pred hcCcccEEEccCCCccc-C-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--------hhhccC
Confidence 34445555555544431 1 224444555555555554443322 44455555555555544421 124445
Q ss_pred cCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEe
Q 045822 126 KSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDL 205 (331)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 205 (331)
++|+.|++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 112 ~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 5555555555554432 2344455555555555555432 345555556666666555543322 555556666666
Q ss_pred ecCcCCCCCCccccccCCccEEEccCCccCc
Q 045822 206 SINKLSGSIPLSFASLTSLTTLYLYENSLCD 236 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 236 (331)
++|.+.+ .+ .+..+++|+.|++++|.+..
T Consensus 186 ~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 186 SKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 6665553 22 25555666666666665544
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=8.6e-18 Score=151.84 Aligned_cols=169 Identities=26% Similarity=0.305 Sum_probs=105.8
Q ss_pred cCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEe
Q 045822 126 KSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDL 205 (331)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 205 (331)
++|+.|++++|.+. .+| ..+++|++|++++|.++. ++. +.. +|++|++++|.+.. .+. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 44555555555554 233 234555666666555553 232 332 56666666666554 222 4566777777
Q ss_pred ecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccc-------cEEEc
Q 045822 206 SINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSL-------KVLSL 278 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L-------~~L~l 278 (331)
++|.+.. +|. .+++|++|++++|.+.+.+. +. ++|+.|++++|.++ .++. +.. +| +.|++
T Consensus 148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~-~lp~-~~~---~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE-SLPA-VPV---RNHHSEETEIFFRC 214 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS-SCCC-CC-----------CCEEEEC
T ss_pred CCCccCc-CCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC-chhh-HHH---hhhcccccceEEec
Confidence 7777663 333 45677777777777765332 33 77777777777776 5554 322 36 88888
Q ss_pred ccccccccCCCCCCCCCcceEEEeccceeccccChhhHHhhh
Q 045822 279 SSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSLIM 320 (331)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~~ 320 (331)
++|++. .+|..+..+++|+.|++++|++++.+|..+..+..
T Consensus 215 s~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 888887 57777777888888888888888888888877665
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=4.4e-18 Score=142.08 Aligned_cols=171 Identities=27% Similarity=0.362 Sum_probs=89.0
Q ss_pred CCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCe
Q 045822 21 GHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSD 100 (331)
Q Consensus 21 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 100 (331)
.++++|++|++++|.+... ..+..+++|++|++++|.+....+ +.++++|++|++++|.+... ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3455555555555555433 224555555666665555552222 55555556666555555432 22555555666
Q ss_pred EEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEE
Q 045822 101 LRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQ 180 (331)
Q Consensus 101 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 180 (331)
|++++|.+..+ ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|+
T Consensus 117 L~L~~n~i~~~--------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 184 (291)
T 1h6t_A 117 LSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184 (291)
T ss_dssp EECTTSCCCCC--------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred EECCCCcCCCC--------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence 66555555432 2344555555555555555532 344555555556655555553322 55555555666
Q ss_pred ccCCcCCCCcchhhhCCCCccEEEeecCcCC
Q 045822 181 LSENTLDGSIPLALGNLIKLVVLDLSINKLS 211 (331)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (331)
+++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 185 L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 185 LSKNHISDL--RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCSSCCCBC--GGGTTCTTCSEEEEEEEEEE
T ss_pred CCCCcCCCC--hhhccCCCCCEEECcCCccc
Confidence 555555432 22455555555655555554
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=1.1e-17 Score=131.52 Aligned_cols=154 Identities=16% Similarity=0.216 Sum_probs=115.6
Q ss_pred cCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCC
Q 045822 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLS 99 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 99 (331)
..++++|++|+++++.+... + .+..+++|++|++++|.+. .+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 35677888888888888743 3 5777888888888888665 334677888888888888888766667788888888
Q ss_pred eEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccc-cCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCE
Q 045822 100 DLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNT-LNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISD 178 (331)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 178 (331)
+|++++|.+.. ..+..+..+++|+.|++++|. +.+ .+ .+..+++|+.+++++|.+.+.. .+..+++|++
T Consensus 116 ~L~Ls~n~i~~------~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~ 185 (197)
T 4ezg_A 116 LLDISHSAHDD------SILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQ 185 (197)
T ss_dssp EEECCSSBCBG------GGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCE
T ss_pred EEEecCCccCc------HhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCE
Confidence 88888887664 335678888888888888887 553 33 5777888888888888877532 6777888888
Q ss_pred EEccCCcCC
Q 045822 179 LQLSENTLD 187 (331)
Q Consensus 179 L~l~~~~~~ 187 (331)
|++++|.+.
T Consensus 186 L~l~~N~i~ 194 (197)
T 4ezg_A 186 LYAFSQTIG 194 (197)
T ss_dssp EEECBC---
T ss_pred EEeeCcccC
Confidence 888888764
No 104
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=4.9e-18 Score=144.53 Aligned_cols=265 Identities=13% Similarity=0.046 Sum_probs=163.7
Q ss_pred CccEEeccccccc--CCCCcccCCCCCccEEEeccCcccCCChhhhcc--------CcCCCeeeccCCcccccccccccC
Q 045822 1 MLKFLGLSFNQFY--GSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGR--------LSSLNGLSLYSNFLKCSIPLSLGN 70 (331)
Q Consensus 1 ~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~ 70 (331)
+|++|||+++++. .... ..++.++.+.+..+. +...+|.+ |++|+.+.+.. .+......+|.+
T Consensus 50 ~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp TCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred cCeEEecCcceeEEecCcc---ccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 5899999999887 2222 233334555555554 33466777 99999999988 777566778899
Q ss_pred CCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCc-EEEcccccc-CCcccccccC
Q 045822 71 LTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLL-NLQLDNNTL-NGSIPLSLGN 148 (331)
Q Consensus 71 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~-~~~~~~~~~~ 148 (331)
|++|+.+++..+.+..+.+.+|..+.++..+.......-. .....-...+..+..|+ .+.+..... .......-..
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~--~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR--FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH--TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh--ccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 9999999999888877777888887777666654421100 00001113355566666 344433211 0000011112
Q ss_pred CCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCcc-EE
Q 045822 149 LTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLT-TL 227 (331)
Q Consensus 149 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L 227 (331)
..++..+.+.+.-...........+++|+.+++++|.+.......|..+++|+.+.+.++ +......+|..+++|+ .+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 345666666654221111111123677888888877776666677788888888888776 5555667777888888 88
Q ss_pred EccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEE
Q 045822 228 YLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLS 277 (331)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~ 277 (331)
.+.+ .+......+|..|++|+.++++++.+. .+....+..+++|+.+.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence 8877 666666677788888888888777777 44444444444477765
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=6.3e-18 Score=154.30 Aligned_cols=174 Identities=26% Similarity=0.352 Sum_probs=129.2
Q ss_pred cCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCC
Q 045822 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLS 99 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 99 (331)
+..+++|++|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 45677788888888877654 247778888888888888774333 77888888888888877643 3577788888
Q ss_pred eEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEE
Q 045822 100 DLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDL 179 (331)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L 179 (331)
+|++++|.+..+ ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+ +..+++|++|
T Consensus 113 ~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 113 SLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp EEECTTSCCCCC--------GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred EEEecCCCCCCC--------ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 888888877643 3467778888888888887754 457778888888888888775444 7778888888
Q ss_pred EccCCcCCCCcchhhhCCCCccEEEeecCcCCCC
Q 045822 180 QLSENTLDGSIPLALGNLIKLVVLDLSINKLSGS 213 (331)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 213 (331)
++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 181 ~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 181 YLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred ECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 8888877643 4577788888888888877643
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3e-17 Score=131.26 Aligned_cols=152 Identities=25% Similarity=0.353 Sum_probs=100.8
Q ss_pred cEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecC
Q 045822 27 KLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNN 106 (331)
Q Consensus 27 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 106 (331)
+.++++++++..+ |..+. ++++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4566666665533 22222 46677777777766544556666777777777777766666666777777777777777
Q ss_pred cccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcC
Q 045822 107 TLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTL 186 (331)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 186 (331)
.++.++ +..+..+++|+.|++++|.+....+..|..+++|+.|++++|.++...+..+..+++|++|++++|.+
T Consensus 91 ~l~~l~------~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELP------KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccC------HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 666432 13356677777777777777766666677777777777777777766666677777788888877766
Q ss_pred C
Q 045822 187 D 187 (331)
Q Consensus 187 ~ 187 (331)
.
T Consensus 165 ~ 165 (220)
T 2v9t_B 165 I 165 (220)
T ss_dssp E
T ss_pred C
Confidence 4
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=4.6e-17 Score=131.09 Aligned_cols=152 Identities=23% Similarity=0.199 Sum_probs=86.7
Q ss_pred ccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeec
Q 045822 26 LKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYN 105 (331)
Q Consensus 26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 105 (331)
-+.++++++++..+. ..+ .++|++|++++|.+....+..+.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip-~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVP-AGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccC-CCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 344555555554322 212 24566666666666544455555666666666666665544444455666666666666
Q ss_pred CcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCc
Q 045822 106 NTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENT 185 (331)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 185 (331)
|.++.++ +..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.......+..+++|++|++.+|.
T Consensus 98 N~l~~l~------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLP------SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCC------TTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccC------hhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 6555322 133455666666666666665 444555566666666666666665444556666677777777766
Q ss_pred CC
Q 045822 186 LD 187 (331)
Q Consensus 186 ~~ 187 (331)
+.
T Consensus 171 ~~ 172 (229)
T 3e6j_A 171 WD 172 (229)
T ss_dssp BC
T ss_pred cc
Confidence 54
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=2.4e-17 Score=129.59 Aligned_cols=154 Identities=22% Similarity=0.288 Sum_probs=120.5
Q ss_pred cCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccE
Q 045822 147 GNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTT 226 (331)
Q Consensus 147 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 226 (331)
..+++|+.++++++.+.. .+ .+..+++|++|++++|.+.. ...+..+++|++|++++|.+....+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 456778888888887763 33 57778888888888886542 346778899999999999888667778888999999
Q ss_pred EEccCCccCccccccccCCCcccEEEccCCc-cccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccc
Q 045822 227 LYLYENSLCDSIQKEIGDMKSLSILDLSSNK-LNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNN 305 (331)
Q Consensus 227 L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 305 (331)
|++++|.+.+..+..+..+++|+.|++++|. +. .++ .+..+. +|+.|++++|++.+ ++ .+..+++|++|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~-~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLP-ELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCS-SCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCC-CCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 9999999987777788889999999999998 55 454 455554 59999999999875 33 7888999999999999
Q ss_pred eecc
Q 045822 306 ELSR 309 (331)
Q Consensus 306 ~~~~ 309 (331)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 9863
No 109
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=1.7e-18 Score=147.32 Aligned_cols=278 Identities=12% Similarity=0.065 Sum_probs=134.4
Q ss_pred CCCccEEEeccCcccCCChhhhcc-CcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccC-------
Q 045822 23 LTHLKLLSFSKNQLSGLIPHEIGR-LSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGS------- 94 (331)
Q Consensus 23 ~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------- 94 (331)
+++++.|.++++- .......+.. +++|+.|++++|++.. ....-+.++.++.+....+. +...+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEE-ecCccccccccccccccccc---cCHHHhccccccccc
Confidence 5678888887652 2111233444 6788888888888761 11111122234444444443 23345666
Q ss_pred -CCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeeccc----CCCccccc
Q 045822 95 -LKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNA----LSGSISNE 169 (331)
Q Consensus 95 -~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~~~~~~ 169 (331)
+++|+++++.. .++.++. .+|..|++|+.+.+..+.+....+.+|..+.++..+...... ........
T Consensus 99 g~~~L~~l~L~~-~i~~I~~------~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIED------AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECT------TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred ccCCCcEEECCc-cccchhH------HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccc
Confidence 77788777777 5554432 457777778888887777665556666665555544443311 11122233
Q ss_pred ccCCCCCC-EEEccCCcCCCCcchhh---hCCCCccEEEeecCcCCCCCCccc-cccCCccEEEccCCccCccccccccC
Q 045822 170 ITNLRSIS-DLQLSENTLDGSIPLAL---GNLIKLVVLDLSINKLSGSIPLSF-ASLTSLTTLYLYENSLCDSIQKEIGD 244 (331)
Q Consensus 170 l~~~~~L~-~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~ 244 (331)
+..+..|+ .+.+..... .....+ ....++..+.+.+.-.. .....+ ..+++|+.+++++|.+......+|..
T Consensus 172 f~~~~~L~~~i~~~~~~~--l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~ 248 (329)
T 3sb4_A 172 FIEGEPLETTIQVGAMGK--LEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ 248 (329)
T ss_dssp EEESCCCEEEEEECTTCC--HHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT
T ss_pred cccccccceeEEecCCCc--HHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhC
Confidence 44455555 333332110 000011 11233444444432111 000111 12455555555555555444555555
Q ss_pred CCcccEEEccCCccccccchhhhhcccccc-EEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHh
Q 045822 245 MKSLSILDLSSNKLNGSIPLSLTNLTNSLK-VLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSL 318 (331)
Q Consensus 245 ~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~ 318 (331)
|++|+.+++.+| +. .++...+..+.+|+ .+++.+ .+....+.+|.+|++|+.+++.++.++...+.+|.++
T Consensus 249 ~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp CTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred CCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 555555555554 33 33333333333355 555555 4443444555555555555555555553334444444
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=5.2e-17 Score=129.90 Aligned_cols=153 Identities=20% Similarity=0.289 Sum_probs=113.9
Q ss_pred CeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCE
Q 045822 99 SDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISD 178 (331)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 178 (331)
+.+++.++.++.++ ..+. ++++.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++
T Consensus 14 ~~v~c~~~~l~~iP-------~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-------TNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECTTSCCSSCC-------SSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CEEEcCCCCcCcCC-------CccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 45666666555332 2221 56777777777777555556777778888888888777666777778888888
Q ss_pred EEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCcc
Q 045822 179 LQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKL 258 (331)
Q Consensus 179 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~ 258 (331)
|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+.+.....+..+++|+.|++++|.+
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 88888887766666677788888888888888877777788888888888888888777777777888888888888887
Q ss_pred cc
Q 045822 259 NG 260 (331)
Q Consensus 259 ~~ 260 (331)
..
T Consensus 165 ~c 166 (220)
T 2v9t_B 165 IC 166 (220)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=1.5e-16 Score=127.99 Aligned_cols=133 Identities=29% Similarity=0.263 Sum_probs=78.2
Q ss_pred CCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEc
Q 045822 174 RSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDL 253 (331)
Q Consensus 174 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 253 (331)
++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+.......+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45556666665555444555555566666666666655444444555666666666666665555555556666666666
Q ss_pred cCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceec
Q 045822 254 SSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 254 s~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 308 (331)
++|.+. .++..+.... +|+.|++++|++.+..+..+..+++|+.|++.+|++.
T Consensus 120 s~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLT-HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCC-SCCTTGGGCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccc-ccCcccccCC-CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 666665 4554444443 3666666666666444455666666666666666665
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=9.2e-17 Score=128.43 Aligned_cols=152 Identities=22% Similarity=0.254 Sum_probs=105.3
Q ss_pred cEEEeccCcccCCChhhhccCcCCCeeeccCCccccccc-ccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeec
Q 045822 27 KLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIP-LSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYN 105 (331)
Q Consensus 27 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 105 (331)
+.++++++.+..+ |..+ .+.+++|++++|.+....+ ..|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4667777666643 3322 2345677777777764433 3466777777777777777766666677777777777777
Q ss_pred CcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCc
Q 045822 106 NTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENT 185 (331)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 185 (331)
|.++.++ +..+..+++|++|++++|.+....+..|..+++|+.|++++|.++...+..+..+++|++|++++|.
T Consensus 91 N~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQ------HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCC------GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCccC------HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 7766432 3456777777888887777776666777777888888888887776667777778888888888887
Q ss_pred CC
Q 045822 186 LD 187 (331)
Q Consensus 186 ~~ 187 (331)
+.
T Consensus 165 l~ 166 (220)
T 2v70_A 165 FN 166 (220)
T ss_dssp EE
T ss_pred Cc
Confidence 65
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=4e-17 Score=140.65 Aligned_cols=176 Identities=26% Similarity=0.314 Sum_probs=103.6
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhc-cCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIG-RLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
++++++++.++. +|..+. +.+++|++++|.+....+..+. .+++|++|++++|.+....+..|.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 345666666652 333332 3466677776666665555555 666677777776666644455666666677777766
Q ss_pred ceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccc---cCCCCCcEEEee
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSL---GNLTNLTTLYFS 158 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~ 158 (331)
|.+....+..|..+++|++|++++|.+..++ +..+..+++|+.|++++|.+....+..| ..+++|+.|+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVD------RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEEC------TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEEC------HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 6666555555666666777777666665321 2455666666666666666664333333 345666666666
Q ss_pred cccCCCcccccccCCCC--CCEEEccCCcCC
Q 045822 159 TNALSGSISNEITNLRS--ISDLQLSENTLD 187 (331)
Q Consensus 159 ~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~ 187 (331)
+|.+.......+..++. ++.|++.+|.+.
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 66666444444555544 356666666543
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=1e-16 Score=144.87 Aligned_cols=185 Identities=27% Similarity=0.398 Sum_probs=125.1
Q ss_pred CccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEee
Q 045822 25 HLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLY 104 (331)
Q Consensus 25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 104 (331)
++++|+++++.+..+ |..+ +++|++|++++|.+. .+| ..+++|++|++++|.+.. .|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 677788877777653 3323 257788888887776 444 346778888888777765 344 443 78888888
Q ss_pred cCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCC
Q 045822 105 NNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSEN 184 (331)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 184 (331)
+|.++.+ |. .+++|+.|++++|.+.. ++. .+++|+.|++++|.++. ++. +. ++|++|++++|
T Consensus 129 ~N~l~~l-------p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 129 NNQLTML-------PE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp SSCCSCC-------CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred CCcCCCC-------CC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence 8777643 22 46778888888887764 333 45678888888887775 333 44 77888888888
Q ss_pred cCCCCcchhhhCCCCc-------cEEEeecCcCCCCCCccccccCCccEEEccCCccCcccccccc
Q 045822 185 TLDGSIPLALGNLIKL-------VVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIG 243 (331)
Q Consensus 185 ~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 243 (331)
.+.. .+. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+.
T Consensus 191 ~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 191 LLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred CCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 7763 333 332 56 88888888888 5666666788888888888888765554443
No 115
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.71 E-value=7.4e-16 Score=133.95 Aligned_cols=267 Identities=13% Similarity=0.095 Sum_probs=193.6
Q ss_pred CCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCe
Q 045822 21 GHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSD 100 (331)
Q Consensus 21 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 100 (331)
..+..++.+.+.. .+..+...+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+..+...+|..|++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3446677777754 3555666777775 7888888765 544555677775 688888876 556666778888899999
Q ss_pred EEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEE
Q 045822 101 LRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQ 180 (331)
Q Consensus 101 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 180 (331)
+++..+.++.++. ..+. +.+|+.+.+..+ +......+|.++++|+.+.+..+ ++......|.. .+|+.+.
T Consensus 185 l~l~~n~l~~I~~------~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 185 ADLSKTKITKLPA------STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp EECTTSCCSEECT------TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred eecCCCcceEech------hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 9998877775432 2333 578888888743 55566667888888999998764 44455566666 6789998
Q ss_pred ccCCcCCCCcchhhhCCCCccEEEeecCcCC-----CCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccC
Q 045822 181 LSENTLDGSIPLALGNLIKLVVLDLSINKLS-----GSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSS 255 (331)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~ 255 (331)
+..+ +.......|..+++|+.+.+.++.+. ......|..|++|+.+.+.+ .+......+|..|++|+.+.+..
T Consensus 255 lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 LPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred eCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 8543 44455677888899999999887654 34567788999999999984 46667778888999999999965
Q ss_pred CccccccchhhhhccccccEEEcccccccccCCCCCCCCC-cceEEEecccee
Q 045822 256 NKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFS-SLIQLILTNNEL 307 (331)
Q Consensus 256 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 307 (331)
+ +. .+....+..+ +|+.+.+.++.........|..++ .++.|++-.+.+
T Consensus 333 ~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 333 N-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp T-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred c-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 4 54 4444444444 599999999987766667787774 788888877754
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=2.1e-16 Score=126.34 Aligned_cols=155 Identities=23% Similarity=0.295 Sum_probs=113.2
Q ss_pred CeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCccc-ccccCCCCCcEEEeecccCCCcccccccCCCCCC
Q 045822 99 SDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIP-LSLGNLTNLTTLYFSTNALSGSISNEITNLRSIS 177 (331)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 177 (331)
++++++++.++.++ ..+ .+.++.|++++|.+....+ ..|..+++|+.|++++|.++...+..+..+++|+
T Consensus 14 ~~l~~s~n~l~~iP-------~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-------EHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp TEEECCSSCCSSCC-------SCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEeEeCCCCcccCc-------cCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 46666666665432 222 2345677777777765433 3466777788888888777766566777788888
Q ss_pred EEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCc
Q 045822 178 DLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNK 257 (331)
Q Consensus 178 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~ 257 (331)
+|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 88888888876666677888888888888888887667778888888888888888877767777888888888888888
Q ss_pred ccccc
Q 045822 258 LNGSI 262 (331)
Q Consensus 258 ~~~~~ 262 (331)
+....
T Consensus 165 l~c~c 169 (220)
T 2v70_A 165 FNCNC 169 (220)
T ss_dssp EECSG
T ss_pred CcCCC
Confidence 76543
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=4e-17 Score=140.63 Aligned_cols=157 Identities=25% Similarity=0.261 Sum_probs=135.9
Q ss_pred CccEEecccccccCCCCcccC-CCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEe
Q 045822 1 MLKFLGLSFNQFYGSIPPEIG-HLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGI 79 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 79 (331)
.+++|+|++|.+++..+..+. ++++|++|++++|.+..+.+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 378999999999988888887 9999999999999999888888999999999999999998666678999999999999
Q ss_pred ecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhh---hCCcCCcEEEccccccCCcccccccCCCC--CcE
Q 045822 80 SNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEI---RNLKSLLNLQLDNNTLNGSIPLSLGNLTN--LTT 154 (331)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~ 154 (331)
++|.+....+..|..+++|++|++++|.+..++. ..+ ..+++|+.|++++|.+....+..+..++. ++.
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~ 193 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV------ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG------GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTT
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCH------HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcce
Confidence 9999998888899999999999999999986542 223 67899999999999998666566777776 488
Q ss_pred EEeecccCC
Q 045822 155 LYFSTNALS 163 (331)
Q Consensus 155 l~l~~~~~~ 163 (331)
+++.+|.+.
T Consensus 194 l~l~~N~~~ 202 (361)
T 2xot_A 194 LYLHNNPLE 202 (361)
T ss_dssp EECCSSCEE
T ss_pred EEecCCCcc
Confidence 999998765
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.1e-16 Score=131.51 Aligned_cols=149 Identities=25% Similarity=0.343 Sum_probs=75.6
Q ss_pred hhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCcc
Q 045822 122 IRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLV 201 (331)
Q Consensus 122 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 201 (331)
+..+++|+.|+++++++.+ .+ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+... +.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCC
T ss_pred hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-Cccc
Confidence 4555666666666666553 22 34555666666666665553322 5555566666666665543211 112 5555
Q ss_pred EEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccc
Q 045822 202 VLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSN 281 (331)
Q Consensus 202 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~ 281 (331)
+|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+.... +|+.|++++|
T Consensus 110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~-~L~~L~l~~N 182 (263)
T 1xeu_A 110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLK-KVNWIDLTGQ 182 (263)
T ss_dssp EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCC-CCCEEEEEEE
T ss_pred EEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCC-CCCEEeCCCC
Confidence 555555555532 2344555555555555555443 1344455555555555555432 2222222 3555555555
Q ss_pred ccc
Q 045822 282 NIV 284 (331)
Q Consensus 282 ~~~ 284 (331)
++.
T Consensus 183 ~~~ 185 (263)
T 1xeu_A 183 KCV 185 (263)
T ss_dssp EEE
T ss_pred ccc
Confidence 554
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=2.5e-15 Score=130.60 Aligned_cols=254 Identities=9% Similarity=0.087 Sum_probs=168.4
Q ss_pred cCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCC
Q 045822 46 RLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNL 125 (331)
Q Consensus 46 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 125 (331)
.+..++.+.+... +......+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+..++ ...|..|
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~------~~aF~~c 179 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLK------EDIFYYC 179 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEEC------SSTTTTC
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEeh------HHHhhCc
Confidence 4566777777653 333445567665 6888887664 555666667764 688888875 344332 2467778
Q ss_pred cCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEe
Q 045822 126 KSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDL 205 (331)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 205 (331)
++|+.+.+..+.+.......|. +.+|+.+.+..+ +.......|..+++|+.+.+..+ +......+|.. .+|+.+.+
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 8888888887777755555565 477888888643 55556667788888888888764 33344555655 67888888
Q ss_pred ecCcCCCCCCccccccCCccEEEccCCccC-----ccccccccCCCcccEEEccCCccccccchhhhhccccccEEEccc
Q 045822 206 SINKLSGSIPLSFASLTSLTTLYLYENSLC-----DSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSS 280 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~ 280 (331)
.. .+......+|..|++|+.+.+.++... .....+|..|++|+.+.+.. .+. .+....+..+.+|+.+.+..
T Consensus 256 p~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 256 PN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp ET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECT
T ss_pred CC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECc
Confidence 43 455455677788888888888776654 34556777888888888874 354 44444444444588888865
Q ss_pred ccccccCCCCCCCCCcceEEEeccceeccccChhhHHhh
Q 045822 281 NNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSLI 319 (331)
Q Consensus 281 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~ 319 (331)
+ +......+|.+| +|+.+++.+|......+..|..+.
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 4 554556778888 888888888877655555555443
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=7e-17 Score=132.73 Aligned_cols=171 Identities=27% Similarity=0.322 Sum_probs=108.4
Q ss_pred CCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeE
Q 045822 22 HLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDL 101 (331)
Q Consensus 22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 101 (331)
.+.++..++++++.+.... .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+....+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3444555566666655332 3556667777777776665 233 56666777777777776654433 6667777777
Q ss_pred EeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEc
Q 045822 102 RLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQL 181 (331)
Q Consensus 102 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 181 (331)
++++|.++.++. +.. ++|+.|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|++|++
T Consensus 91 ~L~~N~l~~l~~--------~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L 157 (263)
T 1xeu_A 91 SVNRNRLKNLNG--------IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDL 157 (263)
T ss_dssp ECCSSCCSCCTT--------CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEEC
T ss_pred ECCCCccCCcCc--------ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEEC
Confidence 777776664432 112 6677777777776642 2466677777777777776643 25667777777777
Q ss_pred cCCcCCCCcchhhhCCCCccEEEeecCcCCCC
Q 045822 182 SENTLDGSIPLALGNLIKLVVLDLSINKLSGS 213 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 213 (331)
++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 77777644 5566777788888887776633
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.1e-16 Score=118.36 Aligned_cols=135 Identities=23% Similarity=0.210 Sum_probs=104.7
Q ss_pred CCCCccEEEeccCccc-CCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCe
Q 045822 22 HLTHLKLLSFSKNQLS-GLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSD 100 (331)
Q Consensus 22 ~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 100 (331)
..++|++|++++|.+. ...+..+..+++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3477888888888886 45566677888888888888888743 77788888888888888887656676777888999
Q ss_pred EEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCccc---ccccCCCCCcEEEeecccCC
Q 045822 101 LRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIP---LSLGNLTNLTTLYFSTNALS 163 (331)
Q Consensus 101 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~ 163 (331)
|++++|.++.++. +..+..+++|+.|++++|.+....+ ..+..+++|+++++.+|...
T Consensus 100 L~Ls~N~l~~~~~-----~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDIST-----LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGG-----GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchh-----HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9998888775421 1567788888899998888875544 36778888999988888765
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.2e-15 Score=114.18 Aligned_cols=127 Identities=21% Similarity=0.203 Sum_probs=62.5
Q ss_pred CCccEEEeccCccc-CCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEE
Q 045822 24 THLKLLSFSKNQLS-GLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLR 102 (331)
Q Consensus 24 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 102 (331)
+++++|++++|.+. ...+..+..+++|++|++++|.+... ..+.++++|++|++++|.+....+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 23344444555555555555555422 4445555555555555555443444444455555555
Q ss_pred eecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCccc---ccccCCCCCcEEEe
Q 045822 103 LYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIP---LSLGNLTNLTTLYF 157 (331)
Q Consensus 103 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l 157 (331)
+++|.++.++ .+..+..+++|+.|++++|++.+..+ ..+..+++|+.+++
T Consensus 95 ls~N~i~~~~-----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLS-----TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHH-----HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChH-----HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555544211 11345555555555555555543333 23445555555544
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=5.6e-15 Score=112.93 Aligned_cols=65 Identities=31% Similarity=0.369 Sum_probs=26.9
Q ss_pred hCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCcccc-ccccCCCcccEEEccCCccc
Q 045822 195 GNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQ-KEIGDMKSLSILDLSSNKLN 259 (331)
Q Consensus 195 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ls~~~~~ 259 (331)
..+++|++|++++|.+....+..+..+++|++|++++|.+.+... ..+..+++|+.|++++|.+.
T Consensus 68 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 68 PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 333444444444444433233333334444444444444433211 33344444444444444444
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=2.5e-17 Score=149.45 Aligned_cols=201 Identities=21% Similarity=0.194 Sum_probs=136.5
Q ss_pred cCcCCCeeeccCCcccccccccccCCCcccEEEeecce-------------eeecCcccccCCCCCCeEE-eecCcccCC
Q 045822 46 RLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNL-------------LFGLIPNEVGSLKSLSDLR-LYNNTLKNM 111 (331)
Q Consensus 46 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~~ 111 (331)
.+++|+.|++++|.+. .+|..++++++|+.|+++++. .....|..+..+++|+.|+ +..+.+..+
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 4556666666666665 556666666666666654432 2223345556666666666 444433211
Q ss_pred CCccCCchhhhhC--CcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCC
Q 045822 112 NALSGSIPDEIRN--LKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGS 189 (331)
Q Consensus 112 ~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 189 (331)
.... .....+.. ...|+.|++++|.+.+ +|. +..+++|+.|++++|.++ .++..+..+++|+.|++++|.+..
T Consensus 426 ~~l~-l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 426 RSKF-LLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHH-HHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhh-hhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 1000 00001111 1358889999998885 454 888889999999999888 567788899999999999998875
Q ss_pred cchhhhCCCCccEEEeecCcCCCCC-CccccccCCccEEEccCCccCccccc---cccCCCcccEEEc
Q 045822 190 IPLALGNLIKLVVLDLSINKLSGSI-PLSFASLTSLTTLYLYENSLCDSIQK---EIGDMKSLSILDL 253 (331)
Q Consensus 190 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l 253 (331)
.+ .+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+.+.++. .+..+|+|+.|++
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 44 7888999999999999998665 88899999999999999998765432 2334788888864
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=2.9e-17 Score=149.01 Aligned_cols=203 Identities=20% Similarity=0.223 Sum_probs=105.7
Q ss_pred cCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccc-------------cCCcccccccCCCCCcEEE-ee
Q 045822 93 GSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNT-------------LNGSIPLSLGNLTNLTTLY-FS 158 (331)
Q Consensus 93 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~l~-l~ 158 (331)
..+++|+.|++++|.++ .+|..++.+++|+.|++.++. ..+..+..+..+++|+.|+ +.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-------~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-------VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHHHH-------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccCccceeccCChhhHH-------hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 45777888888887766 556778888888887775543 1122233333444444444 22
Q ss_pred cccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccc
Q 045822 159 TNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSI 238 (331)
Q Consensus 159 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 238 (331)
.+.+. .|..+.+.+|.+.. + ....|+.|++++|.+.+ .|. +..+++|+.|++++|.+. ..
T Consensus 419 ~n~~~-----------~L~~l~l~~n~i~~-----l-~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~l 478 (567)
T 1dce_A 419 AAYLD-----------DLRSKFLLENSVLK-----M-EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-AL 478 (567)
T ss_dssp HHHHH-----------HHHHHHHHHHHHHH-----H-HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CC
T ss_pred hcccc-----------hhhhhhhhcccccc-----c-CccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-cc
Confidence 22111 01111111111110 0 01235566666666553 343 555666666666666665 33
Q ss_pred cccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccC-CCCCCCCCcceEEEeccceeccccChhhHH
Q 045822 239 QKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEI-PLGHGKFSSLIQLILTNNELSRQLSPELGS 317 (331)
Q Consensus 239 ~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~ 317 (331)
+..+..+++|+.|++++|.+++ ++ .+..+. +|+.|++++|.+.+.. |..+..+++|+.|++++|++++. |+....
T Consensus 479 p~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~-~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~ 554 (567)
T 1dce_A 479 PPALAALRCLEVLQASDNALEN-VD-GVANLP-RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQER 554 (567)
T ss_dssp CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS-SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS-SSCTTH
T ss_pred chhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC-CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC-ccHHHH
Confidence 4455566666666666666653 33 333333 3666666666666444 56666666666666666666633 333444
Q ss_pred hhhhccccc
Q 045822 318 LIMAIPDLN 326 (331)
Q Consensus 318 ~~~~~~~~~ 326 (331)
+...++.|.
T Consensus 555 l~~~lp~L~ 563 (567)
T 1dce_A 555 LAEMLPSVS 563 (567)
T ss_dssp HHHHCTTCS
T ss_pred HHHHCcccC
Confidence 444444443
No 126
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=1.2e-13 Score=120.33 Aligned_cols=288 Identities=12% Similarity=0.040 Sum_probs=160.6
Q ss_pred ccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecc---------
Q 045822 12 FYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNN--------- 82 (331)
Q Consensus 12 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--------- 82 (331)
++++-..+|.+|.+|+.+.+.. .+..+...+|.+|++|+.+++..+ +......+|.++.+|+.+.+...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 4445556677777777777753 355555667777777777777543 22233344445554444433211
Q ss_pred ------------eeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCC
Q 045822 83 ------------LLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLT 150 (331)
Q Consensus 83 ------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 150 (331)
........+|..+.+|+.+.+..+. ..++ ...+..+.+|+.+.+..+ +......+|..+.
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~------~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLH------NGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI 208 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEEC------TTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCcc-ceec------cccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence 0111233456677777777776542 2111 134566666666666443 2222233344444
Q ss_pred CCcEEEeecc---------------------cCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCc
Q 045822 151 NLTTLYFSTN---------------------ALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINK 209 (331)
Q Consensus 151 ~L~~l~l~~~---------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 209 (331)
.|+.+.+..+ .........+..+..++.+.+..+.. ......|..+..++.+......
T Consensus 209 ~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 209 LLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp TCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSE
T ss_pred ccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCcee
Confidence 4444433222 11222233445555666666554432 1333445555666666555433
Q ss_pred CCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCC
Q 045822 210 LSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPL 289 (331)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 289 (331)
+. ...|..+.+|+.+.+.++ +......+|..|.+|+.+++..+ ++ .+....+..+.+|+.+.+..+ +......
T Consensus 288 i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 288 VP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp EC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 22 235667788888888654 55556677888899999988653 44 444444444445999998766 5555677
Q ss_pred CCCCCCcceEEEeccceeccccChhhHHhh
Q 045822 290 GHGKFSSLIQLILTNNELSRQLSPELGSLI 319 (331)
Q Consensus 290 ~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~ 319 (331)
+|.+|++|+.+++..+ +. .+..+|.++.
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~ 388 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTT 388 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTC
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCC
Confidence 8999999999988655 21 3344555443
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=2.1e-14 Score=112.13 Aligned_cols=128 Identities=24% Similarity=0.335 Sum_probs=79.4
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChh-hhccCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPH-EIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
++++++++.++ .+|..+.. ++++|++++|.+....+. .+..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45667777665 34433322 677777777776655443 366677777777777777655566666677777777777
Q ss_pred ceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccC
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLN 139 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 139 (331)
|.+....+..+..+++|++|++++|.+... .+..+..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCV------MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEE------CTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCee------CHHHhhcCCCCCEEEeCCCCcc
Confidence 766666555566666666666666665532 2344555666666666666554
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=3.3e-14 Score=111.06 Aligned_cols=132 Identities=27% Similarity=0.343 Sum_probs=89.5
Q ss_pred cEEEccccccCCcccccccCCCCCcEEEeecccCCCcccc-cccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeec
Q 045822 129 LNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISN-EITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSI 207 (331)
Q Consensus 129 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 207 (331)
+.++++++++. .+|..+. .+++.|++++|.+....+. .+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555554 3333222 2566666666666544332 366677777777777777666566777777777777777
Q ss_pred CcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccc
Q 045822 208 NKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIP 263 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~ 263 (331)
|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77776666667777888888888888877667777778888888888888775443
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=9.5e-15 Score=109.31 Aligned_cols=107 Identities=22% Similarity=0.277 Sum_probs=49.6
Q ss_pred CCcEEEeecccCC-CcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEc
Q 045822 151 NLTTLYFSTNALS-GSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYL 229 (331)
Q Consensus 151 ~L~~l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 229 (331)
+++.+++++|.+. +..+..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444333 22333334444444444444444322 33444455555555555554334444444555555555
Q ss_pred cCCccCcc-ccccccCCCcccEEEccCCccc
Q 045822 230 YENSLCDS-IQKEIGDMKSLSILDLSSNKLN 259 (331)
Q Consensus 230 ~~~~~~~~-~~~~~~~~~~L~~L~ls~~~~~ 259 (331)
++|.+.+. .+..+..+++|+.|++++|.+.
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 55555442 1244455555555555555555
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=8.7e-14 Score=108.66 Aligned_cols=125 Identities=25% Similarity=0.306 Sum_probs=65.8
Q ss_pred EEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecce
Q 045822 4 FLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNL 83 (331)
Q Consensus 4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 83 (331)
+++++++.++ .+|..+. +++++|++++|.+.. .+..|..+++|++|++++|.+....+..|.++++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4555555555 2333222 356666666665552 33455556666666666666554444455555666666666655
Q ss_pred eeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEcccccc
Q 045822 84 LFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTL 138 (331)
Q Consensus 84 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 138 (331)
+....+..|..+++|++|++++|.++.++ +..+..+++|+.|++.+|++
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVP------EGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCC------TTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeC------hhhhhcCccccEEEeCCCCe
Confidence 55554555555555555555555554322 12344455555555555544
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=6.8e-15 Score=137.53 Aligned_cols=144 Identities=26% Similarity=0.318 Sum_probs=82.2
Q ss_pred ccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCcccccc
Q 045822 142 IPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASL 221 (331)
Q Consensus 142 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 221 (331)
.+..+..++.|+.|++++|.+. .++..+..++.|++|++++|.+. ..+..+..+++|++|++++|.+. .+|..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3444555666666666666665 33444446666667777666665 44555666667777777777666 556666666
Q ss_pred CCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCC
Q 045822 222 TSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPL 289 (331)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 289 (331)
++|++|++++|.+.. .+..+..+++|+.|++++|.+.+..+..+.........+++++|.+.+.+|.
T Consensus 293 ~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 777777777776643 3444666677777777777766555554433322123345555555544443
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=2.2e-13 Score=118.70 Aligned_cols=273 Identities=12% Similarity=0.030 Sum_probs=173.4
Q ss_pred ccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCC---
Q 045822 36 LSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMN--- 112 (331)
Q Consensus 36 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--- 112 (331)
+..+...+|.+|.+|+.+.+..+ +......+|.+|.+|+.+++..+ +..+...+|..+.+|+.+.+..+ +..++
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 55567789999999999999754 55456778999999999999764 55566677888888887766432 11000
Q ss_pred -------------CccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEE
Q 045822 113 -------------ALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDL 179 (331)
Q Consensus 113 -------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L 179 (331)
.....-..++..+++|+.+.+..+- .......|..+.+|+.+.+..+ +.......+..+..|+.+
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 0000112468889999999997553 3355567888999999998764 443445566666666666
Q ss_pred EccCCcCC---------------------CCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccc
Q 045822 180 QLSENTLD---------------------GSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSI 238 (331)
Q Consensus 180 ~l~~~~~~---------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 238 (331)
.+..+... ......+..+..++.+.+..+... .....|..+..++.+......+ .
T Consensus 214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~ 289 (394)
T 4fs7_A 214 EFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---P 289 (394)
T ss_dssp CCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---C
T ss_pred ecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---c
Confidence 65543211 111223334444555555443222 2333445555555555544332 2
Q ss_pred cccccCCCcccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHh
Q 045822 239 QKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSL 318 (331)
Q Consensus 239 ~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~ 318 (331)
...+..+.+|+.+.+..+ +. .+....+..+.+|+.+++.++ +......+|.+|.+|+.+++..+ ++..-..+|..|
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 345667888998888764 44 444444444456999999754 55556788999999999999776 554445577776
Q ss_pred hhh
Q 045822 319 IMA 321 (331)
Q Consensus 319 ~~~ 321 (331)
..+
T Consensus 366 ~~L 368 (394)
T 4fs7_A 366 INL 368 (394)
T ss_dssp TTC
T ss_pred CCC
Confidence 654
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=1.5e-13 Score=105.94 Aligned_cols=132 Identities=25% Similarity=0.247 Sum_probs=83.2
Q ss_pred CEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCC
Q 045822 177 SDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSN 256 (331)
Q Consensus 177 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~ 256 (331)
+.+++.++.+... +.. ..+++++|++++|.+.+..+..+..+++|++|++++|.+.+.....+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSV-PTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSC-CTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccC-CCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4555555554432 211 1246677777777666544555666777777777777776655555667777777777777
Q ss_pred ccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccC
Q 045822 257 KLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLS 312 (331)
Q Consensus 257 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p 312 (331)
.+++..+..+.... +|+.|++++|++.+..+..+..+++|++|++++|++....|
T Consensus 87 ~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLT-QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCc-ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77633322233333 47888888887775555556777888888888888875443
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=2.6e-13 Score=104.59 Aligned_cols=131 Identities=24% Similarity=0.269 Sum_probs=90.4
Q ss_pred cEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecC
Q 045822 129 LNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSIN 208 (331)
Q Consensus 129 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 208 (331)
+.+++.++++.. +|..+ .++++.|++++|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 455555555552 22222 256677777777666555555667777777777777776555556677778888888888
Q ss_pred cCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCcccccc
Q 045822 209 KLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSI 262 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~ 262 (331)
.+....+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 877655566777888888888888887666666677888888888888877544
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=5.1e-14 Score=108.42 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=96.1
Q ss_pred ccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCC
Q 045822 19 EIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSL 98 (331)
Q Consensus 19 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 98 (331)
.+.++++|++|++++|.+..+ +......++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 366788899999998888754 44333344889999998888743 677888888888888888876655556788888
Q ss_pred CeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccc----cccCCCCCcEEEeecccC
Q 045822 99 SDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPL----SLGNLTNLTTLYFSTNAL 162 (331)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~ 162 (331)
++|++++|.+..++.+ ..+..+++|+.|++++|++.. .+. .+..+++|+.++++++..
T Consensus 91 ~~L~L~~N~i~~~~~~-----~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLVELGDL-----DPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCCCGGGG-----GGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCCcchhh-----HhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 8888888877643210 256777788888888887763 333 255667777777766544
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=5.8e-15 Score=138.00 Aligned_cols=180 Identities=23% Similarity=0.250 Sum_probs=95.3
Q ss_pred CCccEEEeccCcccCCChhhhccCcCCCeeec-----cCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCC
Q 045822 24 THLKLLSFSKNQLSGLIPHEIGRLSSLNGLSL-----YSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSL 98 (331)
Q Consensus 24 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l-----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 98 (331)
+.++.|++.++.+...... +.....|+.+.+ ..+.+. ..+..+..+++|+.|++++|.+.. .+..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~-~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA-LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhh-HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCC
Confidence 5567777777666543222 212222333222 223232 345667778888888888887763 34455578888
Q ss_pred CeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCE
Q 045822 99 SDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISD 178 (331)
Q Consensus 99 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 178 (331)
++|++++|.++ .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .++..+..+++|++
T Consensus 250 ~~L~Ls~N~l~-------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 250 TRLYLNGNSLT-------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQF 320 (727)
T ss_dssp SCCBCTTSCCS-------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCC
T ss_pred CEEEeeCCcCc-------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccE
Confidence 88888888776 34566778888888888888877 56777777888888888888776 45666778888888
Q ss_pred EEccCCcCCCCcchhhhCCCC-ccEEEeecCcCCCCCC
Q 045822 179 LQLSENTLDGSIPLALGNLIK-LVVLDLSINKLSGSIP 215 (331)
Q Consensus 179 L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~ 215 (331)
|++++|.+....+..+..... ...+++++|.+....|
T Consensus 321 L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 321 LGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp EECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred EeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 888888877655555433211 1224566666554444
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=3.1e-13 Score=105.51 Aligned_cols=126 Identities=26% Similarity=0.402 Sum_probs=82.1
Q ss_pred EEEccccccCCcccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCc
Q 045822 130 NLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINK 209 (331)
Q Consensus 130 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 209 (331)
.++++++++. .+|..+ .++++.|++++|.++ ..+..+..+++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4555555554 233322 245666666666665 334566666677777777776665555666677777777777777
Q ss_pred CCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccc
Q 045822 210 LSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN 259 (331)
Q Consensus 210 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~ 259 (331)
+....+..|..+++|++|++++|.+.......+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77555666777777777777777776665666677777777777777765
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6.9e-14 Score=107.66 Aligned_cols=133 Identities=22% Similarity=0.133 Sum_probs=106.3
Q ss_pred CccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEee
Q 045822 1 MLKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGIS 80 (331)
Q Consensus 1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 80 (331)
+|++|++++|.++. ++......++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 20 ~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp SCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 47899999999984 454333445999999999999865 678899999999999999985444556899999999999
Q ss_pred cceeeecCc-ccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccC
Q 045822 81 NNLLFGLIP-NEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLN 139 (331)
Q Consensus 81 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 139 (331)
+|.+..... ..+..+++|++|++++|.+...+. .-...+..+++|+.|+++++...
T Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~---~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH---YRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT---HHHHHHHHCTTCSEETTEECCHH
T ss_pred CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh---HHHHHHHHCCccceeCCCcCCHH
Confidence 999865432 368899999999999999875432 11124889999999999988765
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.46 E-value=1.7e-11 Score=106.71 Aligned_cols=111 Identities=11% Similarity=0.097 Sum_probs=67.1
Q ss_pred hhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccc
Q 045822 192 LALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTN 271 (331)
Q Consensus 192 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~ 271 (331)
.+|..+..|+.+.+...... .....|..++.|+.+.+.. .+......+|..|.+|+.+.+..+ ++ .+....+..+.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCC
Confidence 35566667777777654322 4445666777777777753 344455566777777777777653 33 33333344444
Q ss_pred cccEEEcccccccccCCCCCCCCCcceEEEecccee
Q 045822 272 SLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNEL 307 (331)
Q Consensus 272 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 307 (331)
+|+.+.+..+ +......+|.+|++|+.+++.++..
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 4777777543 4444556777777777777776643
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2.9e-15 Score=117.78 Aligned_cols=133 Identities=23% Similarity=0.306 Sum_probs=94.1
Q ss_pred hhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhh
Q 045822 42 HEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDE 121 (331)
Q Consensus 42 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 121 (331)
..+..+++|++|++++|.+.. ++ .+.++++|++|++++|.+.. .+..+..+++|++|++++|.+.. ++ .
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-------l~-~ 110 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-------LS-G 110 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-------HH-H
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-------CC-c
Confidence 377778888888888887774 45 77778888888888887763 45556667788888888887763 23 5
Q ss_pred hhCCcCCcEEEccccccCCccc-ccccCCCCCcEEEeecccCCCcccc----------cccCCCCCCEEEccCCcCC
Q 045822 122 IRNLKSLLNLQLDNNTLNGSIP-LSLGNLTNLTTLYFSTNALSGSISN----------EITNLRSISDLQLSENTLD 187 (331)
Q Consensus 122 l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~----------~l~~~~~L~~L~l~~~~~~ 187 (331)
+..+++|+.|++++|.+.+... ..+..+++|+++++++|.+....+. .+..+++|+.|+ ++.+.
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777888888888888774332 3567788888888888877543322 366778888876 44443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.7e-12 Score=98.03 Aligned_cols=105 Identities=27% Similarity=0.305 Sum_probs=76.4
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
.++++++++.++. +|..+ .++|++|++++|.+..+.+..|..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3567787777773 44433 26778888888888777777777788888888888877755555667778888888888
Q ss_pred ceeeecCcccccCCCCCCeEEeecCccc
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNTLK 109 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 109 (331)
|.+....+..|..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7777666666777778888888777665
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=2.2e-14 Score=112.72 Aligned_cols=133 Identities=23% Similarity=0.280 Sum_probs=90.6
Q ss_pred hccCcCCCeeeccCCcccccccc------cccCCCcccEEEeecceeeecCcccccCCCCCCeEEeecCcccCCCCccCC
Q 045822 44 IGRLSSLNGLSLYSNFLKCSIPL------SLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGS 117 (331)
Q Consensus 44 ~~~l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 117 (331)
+...+.++.++++.+.+....+. .+..+++|++|++++|.+.. .+ .+..+++|++|++++|.+..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l------ 85 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI------ 85 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc------
Confidence 34556677777776666544443 67778888888888888775 34 677788888888888877633
Q ss_pred chhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCccc-ccccCCCCCCEEEccCCcCC
Q 045822 118 IPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSIS-NEITNLRSISDLQLSENTLD 187 (331)
Q Consensus 118 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~ 187 (331)
|..+..+++|+.|++++|.+.+ .+ .+..+++|+.+++++|.+..... ..+..+++|++|++++|.+.
T Consensus 86 -~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 86 -ENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp -SSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred -cchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 3455666778888888887764 33 45666777777777777664222 35666677777777776653
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=4.9e-12 Score=96.93 Aligned_cols=104 Identities=27% Similarity=0.329 Sum_probs=60.2
Q ss_pred cEEecccccccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecc
Q 045822 3 KFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNN 82 (331)
Q Consensus 3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 82 (331)
+.++++++.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 35566666665 3333332 55666666666666555566666666666666666665433334556666666666666
Q ss_pred eeeecCcccccCCCCCCeEEeecCccc
Q 045822 83 LLFGLIPNEVGSLKSLSDLRLYNNTLK 109 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 109 (331)
.+....+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 665544444556666666666666554
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=1e-10 Score=101.85 Aligned_cols=286 Identities=12% Similarity=0.104 Sum_probs=182.0
Q ss_pred ccEEecccccccCCCCcccCCCCCccEEEeccC---cccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEE
Q 045822 2 LKFLGLSFNQFYGSIPPEIGHLTHLKLLSFSKN---QLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIG 78 (331)
Q Consensus 2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 78 (331)
|+.+.+-.+ ++..-..+|.+|.+|+.+.+..+ .+..+...+|.+|..|+.+.+..+ +......+|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 556666443 55566788999999999999865 366667788999999999888664 3334566788899999999
Q ss_pred eecceeeecCcccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEee
Q 045822 79 ISNNLLFGLIPNEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFS 158 (331)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 158 (331)
+... ...+...+|..+.+|+.+.+..+ +..++. .++. ..+|+.+.+...-. .....+|..+..+..+...
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~------~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEE------RAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSD 213 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECT------TTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEEC
T ss_pred ccce-eeeecccceecccccccccccce-eeEecc------cccc-ccceeEEEECCccc-ccccchhhhccccceeccc
Confidence 8653 33455667788888888888654 332211 2222 23455555533211 1122223333333322221
Q ss_pred c------------------------------------ccCCCcccccccCCCCCCEEEccCCcCCCCcchhhhCCCCccE
Q 045822 159 T------------------------------------NALSGSISNEITNLRSISDLQLSENTLDGSIPLALGNLIKLVV 202 (331)
Q Consensus 159 ~------------------------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 202 (331)
. +.+.......|..+..|+.+.+.+... ......|..++.|+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~ 292 (394)
T 4gt6_A 214 SESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQD 292 (394)
T ss_dssp CSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCE
T ss_pred ccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCccccccccccc
Confidence 1 111122345677888999999876543 245567888999999
Q ss_pred EEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEccccc
Q 045822 203 LDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNN 282 (331)
Q Consensus 203 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 282 (331)
+.+.. .+.......|..|.+|+.+.+.++ +......+|..|.+|+.+.+..+ ++ .+....+..+.+|+.+++.++.
T Consensus 293 i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 293 IEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred ccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 99974 455456678899999999999764 55666778899999999999654 55 4555555555569999999876
Q ss_pred ccccCCCCCCCCCcceEEEecccee
Q 045822 283 IVGEIPLGHGKFSSLIQLILTNNEL 307 (331)
Q Consensus 283 ~~~~~~~~~~~~~~L~~L~l~~~~~ 307 (331)
... .++..+.+|+.+.+..+.+
T Consensus 369 ~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 369 SQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp HHH---HTCBCCCCC----------
T ss_pred eeh---hhhhccCCCCEEEeCCCCE
Confidence 542 3566778899998876644
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=9.5e-12 Score=95.29 Aligned_cols=104 Identities=23% Similarity=0.307 Sum_probs=54.2
Q ss_pred cEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEccc
Q 045822 201 VVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSS 280 (331)
Q Consensus 201 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~ 280 (331)
+.++++++++. ..|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++...+...++|+.|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence 34555555544 3333222 45555555555555544555555556666666665555 23333322223366666666
Q ss_pred ccccccCCCCCCCCCcceEEEeccceec
Q 045822 281 NNIVGEIPLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 281 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 308 (331)
|++.+..+..+..+++|+.|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6665433344566666666666666665
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=1e-11 Score=94.79 Aligned_cols=105 Identities=27% Similarity=0.356 Sum_probs=65.4
Q ss_pred ccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhccccccEEEcc
Q 045822 200 LVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLS 279 (331)
Q Consensus 200 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~ 279 (331)
.+.++++++.+. .+|..+ .+++++|++++|.+.+..+..+..+++|+.|++++|.+. .++...+...++|+.|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence 455666666665 334333 256667777777666665666666677777777777766 3333333333347777777
Q ss_pred cccccccCCCCCCCCCcceEEEeccceec
Q 045822 280 SNNIVGEIPLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 280 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 308 (331)
+|++.+..+..+..+++|+.|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 77776555556777777777777777776
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=3.2e-14 Score=122.45 Aligned_cols=185 Identities=20% Similarity=0.182 Sum_probs=109.5
Q ss_pred CcCCcEEEccccccCCccccccc-----CCCCCcEEEeecccCCCcccccc-cCCCCCCEEEccCCcCCCCcchhh----
Q 045822 125 LKSLLNLQLDNNTLNGSIPLSLG-----NLTNLTTLYFSTNALSGSISNEI-TNLRSISDLQLSENTLDGSIPLAL---- 194 (331)
Q Consensus 125 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~---- 194 (331)
.+.|+.|++++|.+.......+. ..++|+.|++++|.++......+ ..+++|++|++++|.+.+.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 36788888888887643333222 22578888888887764333222 234567888888887764333333
Q ss_pred -hCCCCccEEEeecCcCCCC----CCccccccCCccEEEccCCccCccc----cccccCCCcccEEEccCCccccccchh
Q 045822 195 -GNLIKLVVLDLSINKLSGS----IPLSFASLTSLTTLYLYENSLCDSI----QKEIGDMKSLSILDLSSNKLNGSIPLS 265 (331)
Q Consensus 195 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~ls~~~~~~~~~~~ 265 (331)
...++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.. ...+..+++|+.|++++|.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2356788888888877642 2233356678888888888876533 344556678888888888877544433
Q ss_pred hhh---ccccccEEEcccccccccCCCCCCCC---C--cceEEE--eccceecc
Q 045822 266 LTN---LTNSLKVLSLSSNNIVGEIPLGHGKF---S--SLIQLI--LTNNELSR 309 (331)
Q Consensus 266 ~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~---~--~L~~L~--l~~~~~~~ 309 (331)
+.. ..++|++|++++|.+.+.....++.+ . .|+.+. +.++.+.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 322 12348888888887764433332221 1 166666 56665543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=1.9e-13 Score=117.63 Aligned_cols=186 Identities=19% Similarity=0.171 Sum_probs=104.6
Q ss_pred CcCCCeeeccCCccccccccc----cc-CCCcccEEEeecceeeecCcccc-cCCCCCCeEEeecCcccCCCCccCCchh
Q 045822 47 LSSLNGLSLYSNFLKCSIPLS----LG-NLTSLIYIGISNNLLFGLIPNEV-GSLKSLSDLRLYNNTLKNMNALSGSIPD 120 (331)
Q Consensus 47 l~~L~~L~l~~~~~~~~~~~~----~~-~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 120 (331)
.++|+.|++++|.++...... +. ..++|++|++++|.+.......+ ..+++|++|++++|.+.+.+. ..+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~--~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC--KDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH--HHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH--HHHHH
Confidence 356777777777765332222 22 23577777777777654322222 234567777777776653211 01112
Q ss_pred hh-hCCcCCcEEEccccccCCc----ccccccCCCCCcEEEeecccCCCc----ccccccCCCCCCEEEccCCcCCCCc-
Q 045822 121 EI-RNLKSLLNLQLDNNTLNGS----IPLSLGNLTNLTTLYFSTNALSGS----ISNEITNLRSISDLQLSENTLDGSI- 190 (331)
Q Consensus 121 ~l-~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~- 190 (331)
.+ ...++|+.|++++|.+.+. +...+...++|++|++++|.+++. +...+...+.|++|++++|.+.+..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 22 2356777777777776532 222335567788888877776642 2445566677888888888776432
Q ss_pred ---chhhhCCCCccEEEeecCcCCCCCCccccccC-----CccEEE--ccCCcc
Q 045822 191 ---PLALGNLIKLVVLDLSINKLSGSIPLSFASLT-----SLTTLY--LYENSL 234 (331)
Q Consensus 191 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~L~~L~--l~~~~~ 234 (331)
...+...++|++|++++|.+.+.....+..+. .++.+. +.++.+
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 23344567888888888887754433333221 155555 555544
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.27 E-value=6e-10 Score=96.44 Aligned_cols=145 Identities=9% Similarity=0.061 Sum_probs=90.3
Q ss_pred cccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCcc
Q 045822 169 EITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSL 248 (331)
Q Consensus 169 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 248 (331)
.+..+..++.+.+..+. .......+..+..|+.+.+..+ +.......|..+.+|+.+.+... +......+|..|++|
T Consensus 212 ~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 34455566666665432 2233445666777888877664 44345566777788888887543 444555667788888
Q ss_pred cEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHhh
Q 045822 249 SILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSLI 319 (331)
Q Consensus 249 ~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~ 319 (331)
+.+.+.++.+. .+....+..+.+|+.+.+..+ +......+|.+|++|+.+.+-.+ ++..-..+|..+.
T Consensus 289 ~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 289 TKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 88888777666 444444444445888888654 44455677888888888877544 4333344565543
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.12 E-value=1.1e-08 Score=88.55 Aligned_cols=282 Identities=9% Similarity=0.050 Sum_probs=179.7
Q ss_pred cCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeecceeeecCcccccCCCCCC
Q 045822 20 IGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLLFGLIPNEVGSLKSLS 99 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 99 (331)
+....+|+.+.+.. .+..+...+|.+|.+|+.+.+..+ +......+|.++ +|+.+.+..+ +..+...+|..+ +|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 34556788888853 455566778888888888888654 443455677776 5777666443 334444556554 788
Q ss_pred eEEeecCcccCCCCccCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCC------------Cccc
Q 045822 100 DLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALS------------GSIS 167 (331)
Q Consensus 100 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~------------~~~~ 167 (331)
.+.+..+. ..++ ...+..+ +++.+.+..+ +.......|..+.+++.+.+...... ....
T Consensus 117 ~i~lp~~~-~~i~------~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 117 DFEFPGAT-TEIG------NYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp EEECCTTC-CEEC------TTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred cccCCCcc-cccc------ccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee
Confidence 88886542 2111 1233333 4555554332 23233445666677777766543221 1122
Q ss_pred ccccCCCCCCEEEccCCcCCCCcchhhhCCCCccEEEeecCcCCCCCCccccccCCccEEEccCCccCccccccccCCCc
Q 045822 168 NEITNLRSISDLQLSENTLDGSIPLALGNLIKLVVLDLSINKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKS 247 (331)
Q Consensus 168 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 247 (331)
..+..+..+..+.+..... ......+..+..++.+.+..+ +.......+..+..|+.+.+..+ +......++..+.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp EECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred cccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 3344555666666655432 233445667788888888754 33345567788999999999775 55566677888999
Q ss_pred ccEEEccCCccccccchhhhhccccccEEEcccccccccCCCCCCCCCcceEEEeccceeccccChhhHHhhhh
Q 045822 248 LSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNELSRQLSPELGSLIMA 321 (331)
Q Consensus 248 L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~ 321 (331)
|+.+.+..+ +. .+....+..+.+|+.+.+.++.+......+|.+|.+|+.+.|..+ ++..-..+|..|..+
T Consensus 265 l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 265 LKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp CCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred hcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 999999754 44 444555555556999999998887667889999999999999755 443345578777655
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.08 E-value=4.4e-10 Score=96.09 Aligned_cols=104 Identities=22% Similarity=0.195 Sum_probs=84.0
Q ss_pred EEecccc-cccCCCCcccCCCCCccEEEecc-CcccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 4 FLGLSFN-QFYGSIPPEIGHLTHLKLLSFSK-NQLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 4 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
+++.+++ .++ .+|. +..+++|++|+|++ |.+..+.+..|.++++|+.|+|++|.+....+..|.++++|++|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677776 777 4566 88888899999986 888888778888899999999999988877777888899999999999
Q ss_pred ceeeecCcccccCCCCCCeEEeecCcccC
Q 045822 82 NLLFGLIPNEVGSLKSLSDLRLYNNTLKN 110 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 110 (331)
|.+....+..+..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 988866666666555 8999998887763
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=1e-10 Score=99.92 Aligned_cols=182 Identities=14% Similarity=0.150 Sum_probs=93.0
Q ss_pred hhhCCcCCcEEEccccccCC---------cccccccCCCCCcEEEeecccCCCcccccccCCCCCCEEEccCCcCCCCcc
Q 045822 121 EIRNLKSLLNLQLDNNTLNG---------SIPLSLGNLTNLTTLYFSTNALSGSISNEITNLRSISDLQLSENTLDGSIP 191 (331)
Q Consensus 121 ~l~~~~~L~~L~l~~~~~~~---------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 191 (331)
+...+++|+.|.+.+..... .....+..+|+|+.|.+.++.-. ..+. + ..++|++|.+..+.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 35567788888876542210 12223445677888888766211 1111 2 25677777777766543333
Q ss_pred hhhh--CCCCccEEEeecC--cCC-CC----CCccc--cccCCccEEEccCCccCccccccc---cCCCcccEEEccCCc
Q 045822 192 LALG--NLIKLVVLDLSIN--KLS-GS----IPLSF--ASLTSLTTLYLYENSLCDSIQKEI---GDMKSLSILDLSSNK 257 (331)
Q Consensus 192 ~~~~--~~~~L~~L~l~~~--~~~-~~----~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~ls~~~ 257 (331)
..+. .+|+|++|+++.+ ... .. ....+ ..+|+|++|.+.+|.+.+.....+ ..+|+|+.|+++.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 3333 5677777777531 111 00 00111 235677777777766653222111 245677777777776
Q ss_pred cccccchhhhh---ccccccEEEcccccccccCCCCCCCCCcceEEEeccce
Q 045822 258 LNGSIPLSLTN---LTNSLKVLSLSSNNIVGEIPLGHGKFSSLIQLILTNNE 306 (331)
Q Consensus 258 ~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 306 (331)
+.+.....+.. ..++|+.|++++|.+++.....+...- ...+++++++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 66544333321 123477777776666544333333200 2345555554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=1.9e-10 Score=98.24 Aligned_cols=186 Identities=16% Similarity=0.170 Sum_probs=108.8
Q ss_pred ccCCCCCCeEEeecCcccCCC--Cc-cCCchhhhhCCcCCcEEEccccccCCcccccccCCCCCcEEEeecccCCCcccc
Q 045822 92 VGSLKSLSDLRLYNNTLKNMN--AL-SGSIPDEIRNLKSLLNLQLDNNTLNGSIPLSLGNLTNLTTLYFSTNALSGSISN 168 (331)
Q Consensus 92 ~~~~~~L~~L~l~~~~~~~~~--~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 168 (331)
..++++|+.|.+........+ .. .+.+...+..+|+|+.|.+.++.-. ..+. + ..++|+.|.+..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 456778888888654322110 00 1134566777888888888776311 1222 2 267888888887776544333
Q ss_pred ccc--CCCCCCEEEccCC--cC-CCC----cchhh--hCCCCccEEEeecCcCCCCCCccc---cccCCccEEEccCCcc
Q 045822 169 EIT--NLRSISDLQLSEN--TL-DGS----IPLAL--GNLIKLVVLDLSINKLSGSIPLSF---ASLTSLTTLYLYENSL 234 (331)
Q Consensus 169 ~l~--~~~~L~~L~l~~~--~~-~~~----~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~ 234 (331)
.+. .+|+|++|++..+ .. .+. ....+ ..+|+|++|++.+|.+....+..+ ..+++|++|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 443 6788888887531 11 110 11122 246788888888877663222222 2467888888888877
Q ss_pred Cccccc----cccCCCcccEEEccCCccccccchhhhhccccccEEEccccc
Q 045822 235 CDSIQK----EIGDMKSLSILDLSSNKLNGSIPLSLTNLTNSLKVLSLSSNN 282 (331)
Q Consensus 235 ~~~~~~----~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 282 (331)
.+.... .+..+++|+.|++++|.+++.....+.... -..+++++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 654322 224468888888888887766555554422 2456777665
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.97 E-value=1.9e-09 Score=92.11 Aligned_cols=89 Identities=24% Similarity=0.157 Sum_probs=42.9
Q ss_pred hhCCCCccEEEeec-CcCCCCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccccccchhhhhcccc
Q 045822 194 LGNLIKLVVLDLSI-NKLSGSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLNGSIPLSLTNLTNS 272 (331)
Q Consensus 194 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~ 272 (331)
+..+++|+.|++++ |.+....+..|..+++|+.|++++|.+.+..+..|..+++|+.|+|++|.+. .++...+...+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~- 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS- 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-
Confidence 44455555555553 5554333344555555555555555554444444455555555555555554 33333333332
Q ss_pred ccEEEccccccc
Q 045822 273 LKVLSLSSNNIV 284 (331)
Q Consensus 273 L~~L~l~~~~~~ 284 (331)
|+.|++.+|++.
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 455555544443
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.95 E-value=3.2e-10 Score=85.47 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=76.4
Q ss_pred CCccEEEccCCccCccccccccCCCcccEEEccCCc-cccccchhhhhc---cccccEEEccccc-ccccCCCCCCCCCc
Q 045822 222 TSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNK-LNGSIPLSLTNL---TNSLKVLSLSSNN-IVGEIPLGHGKFSS 296 (331)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~-~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~~~~~~~~~~~~ 296 (331)
..|++|++++|.+++.....+..|++|+.|++++|. +++.....+... .++|+.|++++|. +++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888888887777778888999999999985 777666666653 3359999999984 77665667778899
Q ss_pred ceEEEeccce-eccccChhhHHhhhhcccccc
Q 045822 297 LIQLILTNNE-LSRQLSPELGSLIMAIPDLNQ 327 (331)
Q Consensus 297 L~~L~l~~~~-~~~~~p~~~~~~~~~~~~~~~ 327 (331)
|++|++++|+ +++ ..-....+...+|++.+
T Consensus 141 L~~L~L~~c~~Itd-~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE-KEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp CCEEEEESCTTCCC-HHHHHHHHHHHCTTCEE
T ss_pred CCEEECCCCCCCCc-hHHHHHHHHHHCCCcEE
Confidence 9999999995 542 22234455555555443
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.70 E-value=6e-09 Score=78.53 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=69.0
Q ss_pred CCCccEEEeccCcccCCChhhhccCcCCCeeeccCCc-ccccccccccCC----CcccEEEeecce-eeecCcccccCCC
Q 045822 23 LTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYSNF-LKCSIPLSLGNL----TSLIYIGISNNL-LFGLIPNEVGSLK 96 (331)
Q Consensus 23 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~~~ 96 (331)
-..|++|++++|.+++.....+.+|++|++|++++|. +++.....+..+ ++|++|++++|. +++.....+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3579999999999887767778899999999999995 765555556553 579999999986 7766556678899
Q ss_pred CCCeEEeecCc
Q 045822 97 SLSDLRLYNNT 107 (331)
Q Consensus 97 ~L~~L~l~~~~ 107 (331)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999985
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=4.6e-09 Score=81.09 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=49.2
Q ss_pred ccCCccEEEccCCccCccc----cccccCCCcccEEEccCCccccccchhhhhc---cccccEEEc--cccccccc----
Q 045822 220 SLTSLTTLYLYENSLCDSI----QKEIGDMKSLSILDLSSNKLNGSIPLSLTNL---TNSLKVLSL--SSNNIVGE---- 286 (331)
Q Consensus 220 ~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~ls~~~~~~~~~~~~~~~---~~~L~~L~l--~~~~~~~~---- 286 (331)
..++|++|++++|.+.+.. ...+...++|+.|++++|.+.+.....+... .++|++|++ ++|.+...
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 3455666666666554422 2223344566666666666665433322211 123777777 66666532
Q ss_pred CCCCCCCCCcceEEEeccceec
Q 045822 287 IPLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 287 ~~~~~~~~~~L~~L~l~~~~~~ 308 (331)
+...+..+++|++|++++|.+.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCcCEEeccCCCCC
Confidence 2334555677888888888775
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=1.4e-08 Score=78.32 Aligned_cols=66 Identities=8% Similarity=0.058 Sum_probs=29.6
Q ss_pred cCCCCCccEEEeccC-cccCC----ChhhhccCcCCCeeeccCCccccc----ccccccCCCcccEEEeecceee
Q 045822 20 IGHLTHLKLLSFSKN-QLSGL----IPHEIGRLSSLNGLSLYSNFLKCS----IPLSLGNLTSLIYIGISNNLLF 85 (331)
Q Consensus 20 ~~~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~ 85 (331)
+..++.|++|++++| .+... ....+...++|++|++++|.+.+. +...+...++|++|++++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 444555555555555 44421 122233444555555555555422 1222333344555555555443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.00 E-value=4.6e-06 Score=67.60 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=69.0
Q ss_pred cCCCCCccE--EEeccCcccC---CChhhhccCcCCCeeeccCCcccc--cccccccCCCcccEEEeecceeeecCcccc
Q 045822 20 IGHLTHLKL--LSFSKNQLSG---LIPHEIGRLSSLNGLSLYSNFLKC--SIPLSLGNLTSLIYIGISNNLLFGLIPNEV 92 (331)
Q Consensus 20 ~~~~~~L~~--L~l~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 92 (331)
+...|.|+. ++++.|.... .......++++|+.|++++|.+.. .++..+..+++|+.|++++|.+... ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 444445554 4555553321 111222468889999999998874 3345566888999999999888754 223
Q ss_pred cCCC--CCCeEEeecCcccC-CCCccCCchhhhhCCcCCcEEEc
Q 045822 93 GSLK--SLSDLRLYNNTLKN-MNALSGSIPDEIRNLKSLLNLQL 133 (331)
Q Consensus 93 ~~~~--~L~~L~l~~~~~~~-~~~~~~~~~~~l~~~~~L~~L~l 133 (331)
..+. +|++|++.+|.+.. ++.........+..+|+|+.|+-
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 3333 89999999988763 11000112245778888888763
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.97 E-value=1.2e-05 Score=65.22 Aligned_cols=64 Identities=28% Similarity=0.285 Sum_probs=29.5
Q ss_pred CCCCccEEEeecCcCCC--CCCccccccCCccEEEccCCccCcc-ccccccCCCcccEEEccCCcccc
Q 045822 196 NLIKLVVLDLSINKLSG--SIPLSFASLTSLTTLYLYENSLCDS-IQKEIGDMKSLSILDLSSNKLNG 260 (331)
Q Consensus 196 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ls~~~~~~ 260 (331)
.++.|+.|++++|.+.. ..+..+..+++|+.|++++|.+.+. ....+..+ +|+.|++++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 34555555555555553 1223344555555555555555432 11122222 45555555555543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.64 E-value=2.1e-05 Score=60.33 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=84.3
Q ss_pred hhhhCCCCccEEEeecC-cCCCCC----CccccccCCccEEEccCCccCcccc----ccccCCCcccEEEccCCcccccc
Q 045822 192 LALGNLIKLVVLDLSIN-KLSGSI----PLSFASLTSLTTLYLYENSLCDSIQ----KEIGDMKSLSILDLSSNKLNGSI 262 (331)
Q Consensus 192 ~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~~~~~~~~ 262 (331)
..+..-+.|++|+++++ .+.+.. ...+..-..|+.|++++|.+.+... +++...+.|+.|+++.|.|.+..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34456688999999985 776432 3334455789999999999986444 34446789999999999998776
Q ss_pred chhhhhcc---ccccEEEccccc---ccc----cCCCCCCCCCcceEEEeccceec
Q 045822 263 PLSLTNLT---NSLKVLSLSSNN---IVG----EIPLGHGKFSSLIQLILTNNELS 308 (331)
Q Consensus 263 ~~~~~~~~---~~L~~L~l~~~~---~~~----~~~~~~~~~~~L~~L~l~~~~~~ 308 (331)
...+.... ..|+.|+++++. +.. .+...+...+.|++|+++.+.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 65543322 249999998653 332 24556777899999999988764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=8.6e-05 Score=56.95 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=26.0
Q ss_pred cCCCcccEEEeecceeeecCc----ccccCCCCCCeEEeecCcccCCCCccCCchhhhhCCcCCcEEEcc
Q 045822 69 GNLTSLIYIGISNNLLFGLIP----NEVGSLKSLSDLRLYNNTLKNMNALSGSIPDEIRNLKSLLNLQLD 134 (331)
Q Consensus 69 ~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 134 (331)
..-..|+.|++++|.+.+... .++.....|++|++++|.+.+.+.. .+...+..-+.|++|+++
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~--ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA--RLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH--HHHHHTTTTCCCSEEECC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH--HHHHHHhhCCceeEEECC
Confidence 334444444444444432211 2223344455555555544432110 222333444445555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.31 E-value=0.0082 Score=42.75 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=35.9
Q ss_pred EEEeecCcCC-CCCCccccccCCccEEEccCCccCccccccccCCCcccEEEccCCccc
Q 045822 202 VLDLSINKLS-GSIPLSFASLTSLTTLYLYENSLCDSIQKEIGDMKSLSILDLSSNKLN 259 (331)
Q Consensus 202 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~ 259 (331)
.++.++++++ ..+|..+. +++++|++++|.+.......|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555665554 23343332 46777777777777666666777777777777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.02 E-value=0.02 Score=40.75 Aligned_cols=36 Identities=25% Similarity=0.153 Sum_probs=18.3
Q ss_pred CCCeeeccCCcccccccccccCCCcccEEEeeccee
Q 045822 49 SLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISNNLL 84 (331)
Q Consensus 49 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 84 (331)
+|++|+|++|.++...+..|..+++|+.|++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 355555555555533333445555555555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=87.39 E-value=2.1 Score=28.50 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=23.6
Q ss_pred cccCCCCcccCCCCCccEEEeccCcccCCChhhhccCcCCCeeeccC
Q 045822 11 QFYGSIPPEIGHLTHLKLLSFSKNQLSGLIPHEIGRLSSLNGLSLYS 57 (331)
Q Consensus 11 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 57 (331)
.++..-..+|..|.+|+.+.+-.+ +..+...+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444455555555555555333 3334445555555555555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.95 E-value=1.7 Score=28.98 Aligned_cols=46 Identities=9% Similarity=0.071 Sum_probs=28.3
Q ss_pred cccCCChhhhccCcCCCeeeccCCcccccccccccCCCcccEEEeec
Q 045822 35 QLSGLIPHEIGRLSSLNGLSLYSNFLKCSIPLSLGNLTSLIYIGISN 81 (331)
Q Consensus 35 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 81 (331)
.+..+...+|.+|..|+.+.+-.+ +......+|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444555667777777777777653 2224455666677777776654
Done!