BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045823
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MA98|ERCC1_ARATH DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1
PE=2 SV=1
Length = 410
Score = 208 bits (529), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/261 (49%), Positives = 152/261 (58%), Gaps = 63/261 (24%)
Query: 1 KGNPLLKHITYVRWAFADVVCDYLLGQNSCALYLRLCIYFLN---LLF------------ 45
KGNPLLKHI V+W F+D++ DY+LGQNSCALYL L + L+ L F
Sbjct: 133 KGNPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSLRYHLLHPDYLYFRIRELQKNFKLS 192
Query: 46 ---------DNV--LLWVFSTFGTSSC--LESWSNFSQEECGRYLETIKVYENKPADLTQ 92
D V LL V T C L +WS EC RYLETIKVYENKPADL Q
Sbjct: 193 VVLCHVDVEDTVKPLLEVTKTALLHDCTLLCAWS---MTECARYLETIKVYENKPADLIQ 249
Query: 93 GQMDTDYLSRLTHALTSVRSVNKTDVVNLGSTFG----------EDLSHCPGIGER---- 138
GQMDTDYLSRL H+LTS+R VNK+DVV LGSTFG EDL+ CPGIGER
Sbjct: 250 GQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIIDASMEDLARCPGIGERKVKR 309
Query: 139 ---------KHVVSSH-----PPIPETPSQKDVEPSSVNEVTEVEKDAEDVNKRRKKELE 184
K SS+ PPIPE P +KDV +S V E E ED KR+KKE E
Sbjct: 310 LYDTFHEPFKRATSSYPSVVEPPIPEAPVEKDV--NSEEPVEEDEDFVEDSRKRKKKEPE 367
Query: 185 L--TVKSALSAAFSKYADKMG 203
TVK+ALSA F++Y+D++
Sbjct: 368 PEKTVKTALSAVFARYSDRLS 388
>sp|P07992|ERCC1_HUMAN DNA excision repair protein ERCC-1 OS=Homo sapiens GN=ERCC1 PE=1
SV=1
Length = 297
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 93/177 (52%), Gaps = 41/177 (23%)
Query: 1 KGNPLLKHITYVRWAFADVVCDYLLGQNSCALYLRLCIYFL--------------NLLFD 46
+GNP+LK + V W F DV+ DY+LGQ++CAL+L L + L N
Sbjct: 108 RGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALR 167
Query: 47 NVLLWV--------------FSTFGTSSCLESWSNFSQEECGRYLETIKVYENKPADLTQ 92
+L+ V + + +WS EE GRYLET K YE KPADL
Sbjct: 168 VLLVQVDVKDPQQALKELAKMCILADCTLILAWSP---EEAGRYLETYKAYEQKPADLLM 224
Query: 93 GQMDTDYLSRLTHALTSVRSVNKTDVVNLGSTFG----------EDLSHCPGIGERK 139
+++ D++SR+T LT+V+SVNKTD L +TFG EDL+ CPG+G +K
Sbjct: 225 EKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQK 281
>sp|Q1LZ75|ERCC1_BOVIN DNA excision repair protein ERCC-1 OS=Bos taurus GN=ERCC1 PE=2 SV=1
Length = 294
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 92/177 (51%), Gaps = 41/177 (23%)
Query: 1 KGNPLLKHITYVRWAFADVVCDYLLGQNSCALYLRLCI------------------YFLN 42
+GNP+L+ + V W F DV+ DY+LGQ++CAL+L L Y L
Sbjct: 104 RGNPVLRFVRNVPWEFGDVLPDYVLGQSTCALFLSLRYHNLHPDYIHQRLQSLGKSYALR 163
Query: 43 LLFDNV----------LLWVFSTFGTSSCLESWSNFSQEECGRYLETIKVYENKPADLTQ 92
+L V L + + +WS EE GRYLET K YE KPADL
Sbjct: 164 VLLVQVDVKDPQQALKELAKMCILADCTLILAWSP---EEAGRYLETYKAYEQKPADLLM 220
Query: 93 GQMDTDYLSRLTHALTSVRSVNKTDVVNLGSTFG----------EDLSHCPGIGERK 139
+++ D++SR+T LT+V+SVNKTD L +TFG EDLS CPG+G +K
Sbjct: 221 EKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLSLCPGLGPQK 277
>sp|P07903|ERCC1_MOUSE DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2
SV=2
Length = 298
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 92/177 (51%), Gaps = 41/177 (23%)
Query: 1 KGNPLLKHITYVRWAFADVVCDYLLGQNSCALYLRLCIYFL--------------NLLFD 46
+GNP+LK + V W F +V+ DY+LGQ++CAL+L L + L N
Sbjct: 108 RGNPVLKFVRNVPWEFGEVIPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALR 167
Query: 47 NVLLWV--------------FSTFGTSSCLESWSNFSQEECGRYLETIKVYENKPADLTQ 92
+L+ V + + +WS EE GRYLET K YE KPADL
Sbjct: 168 VLLVQVDVKDPQQALKELAKMCILADCTLVLAWS---AEEAGRYLETYKAYEQKPADLLM 224
Query: 93 GQMDTDYLSRLTHALTSVRSVNKTDVVNLGSTFG----------EDLSHCPGIGERK 139
+++ ++LSR T LT+V+SVNKTD L +TFG EDL+ CPG+G +K
Sbjct: 225 EKLEQNFLSRATECLTTVKSVNKTDSQTLLATFGSLEQLFTASREDLALCPGLGPQK 281
>sp|Q06182|SWI10_SCHPO Mating-type switching protein swi10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=swi10 PE=3 SV=1
Length = 252
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 31/154 (20%)
Query: 1 KGNPLLKHITYVRWAFADVVCDYLLGQNSCALYLRLCIYFL----------------NLL 44
KGNPLL H+ V W + D+V D+++G C+L+L L + L NL
Sbjct: 50 KGNPLLPHVRNVPWEYTDIVPDFVMGTGICSLFLSLKYHHLHPEYIYSRISKLGKSYNLR 109
Query: 45 FDNVLLWV------------FSTFGTSSCLESWSNFSQEECGRYLETIKVYENKPADLTQ 92
+L+ V S + + +WS+ EE RYLET K YEN L
Sbjct: 110 ILLILVDVENHQASIQELVKTSIVNQYTLILAWSS---EEAARYLETYKAYENMSPALIM 166
Query: 93 GQMDTDYLSRLTHALTSVRSVNKTDVVNLGSTFG 126
+ TDYLS++ LTS+R +NK+D ++L S FG
Sbjct: 167 EKPSTDYLSQVQSFLTSIRGINKSDSLSLLSKFG 200
>sp|Q55GG6|ERCC1_DICDI DNA excision repair protein ERCC-1 OS=Dictyostelium discoideum
GN=ercc1 PE=3 SV=1
Length = 514
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 55/137 (40%), Gaps = 28/137 (20%)
Query: 25 LGQNSCALYLRLCIYFLNL-------LFDNVL--LWVFSTFGTSSCLESWSNFSQEECGR 75
L NS + LR+ + F +L F N L + + F C WS Q E +
Sbjct: 282 LMTNSDSFTLRILLVFADLSDSDNCEQFINELNLIAIKLQFTLIVC---WS---QIEAAK 335
Query: 76 YLETIKVYENKPADLTQGQMDTDYL---SRLTHALTSVRSVNKTDVVNLGSTFG------ 126
YLE K + N+ D + + L S+ LTS++SVNKTD L F
Sbjct: 336 YLEAYKTFNNRAPDPIKARAQPIELGGKSKNEQVLTSIKSVNKTDATTLLKNFQTMQQIF 395
Query: 127 ----EDLSHCPGIGERK 139
LS PG G K
Sbjct: 396 TCQKTTLSKLPGFGPVK 412
>sp|Q5RFS7|PP1R7_PONAB Protein phosphatase 1 regulatory subunit 7 OS=Pongo abelii
GN=PPP1R7 PE=2 SV=1
Length = 360
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 60 SCLESWSNFSQEECGRYLETIKVYENKPADLTQGQMDTDYLSRLTHALTSVRSVNKTDV 118
+ LESWS+ + + R LET+ + N P Q D Y ++ AL SVR ++ T V
Sbjct: 306 NLLESWSDLDELKGARSLETVYLERN-PL-----QKDPQYRRKVMLALPSVRQIDATFV 358
>sp|Q5HZV9|PP1R7_RAT Protein phosphatase 1 regulatory subunit 7 OS=Rattus norvegicus
GN=Ppp1r7 PE=1 SV=1
Length = 360
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 60 SCLESWSNFSQEECGRYLETIKVYENKPADLTQGQMDTDYLSRLTHALTSVRSVNKTDV 118
+ LESWS+ + + R LET+ + N P Q D Y ++ AL SVR ++ T V
Sbjct: 306 NLLESWSDLDELKGARSLETVYLERN-PL-----QKDPQYRRKVMLALPSVRQIDATFV 358
>sp|Q15435|PP1R7_HUMAN Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens
GN=PPP1R7 PE=1 SV=1
Length = 360
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 60 SCLESWSNFSQEECGRYLETIKVYENKPADLTQGQMDTDYLSRLTHALTSVRSVNKTDV 118
+ LESWS+ + + R LET+ + N P Q D Y ++ AL SVR ++ T V
Sbjct: 306 NLLESWSDLDELKGARSLETVYLERN-PL-----QKDPQYRRKVMLALPSVRQIDATFV 358
>sp|Q3UM45|PP1R7_MOUSE Protein phosphatase 1 regulatory subunit 7 OS=Mus musculus
GN=Ppp1r7 PE=1 SV=2
Length = 361
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 60 SCLESWSNFSQEECGRYLETIKVYENKPADLTQGQMDTDYLSRLTHALTSVRSVNKT 116
+ LESWS+ + + R LET+ + N P Q D Y ++ AL SVR ++ T
Sbjct: 307 NLLESWSDLDELKGARSLETVYLERN-PL-----QKDPQYRRKVMLALPSVRQIDAT 357
>sp|Q7NBF9|PLPA_MYCGA Fibronectin-binding protein PlpA OS=Mycoplasma gallisepticum
(strain R(low / passage 15 / clone 2)) GN=plpA PE=1 SV=2
Length = 854
Score = 31.6 bits (70), Expect = 4.8, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 150 ETPSQKDVE-PSSVNEVTEVEKDAEDVNKRRKKELELTVKSALSAAFSKYADKMGK-KKN 207
E Q+D E + + E K+A D + R KE L ++S L F +ADK+ +
Sbjct: 532 EAKQQQDKEFAQKIERIIEQTKEANDSLQNRVKESSLDMESKLENKFESFADKLTEITSK 591
Query: 208 TLSAEVGETSAS 219
+S ++ E AS
Sbjct: 592 KISEKMTEQQAS 603
>sp|Q61879|MYH10_MOUSE Myosin-10 OS=Mus musculus GN=Myh10 PE=1 SV=2
Length = 1976
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 150 ETPSQKDVEPSSVNEVTEVEKDAEDVNKRRKKELELTVKSALSAAFSKYADKMGKKKNTL 209
E +++ S N ++E+ +++ K + +ELE VKS A S K+G+ + L
Sbjct: 1772 ELAAERSAAQKSDNARQQLERQNKEL-KAKLQELEGAVKSKFKATISALEAKIGQLEEQL 1830
Query: 210 SAEVGETSASNSGAKNSD 227
E E +A+N + ++
Sbjct: 1831 EQEAKERAAANKLVRRTE 1848
>sp|Q27991|MYH10_BOVIN Myosin-10 OS=Bos taurus GN=MYH10 PE=2 SV=2
Length = 1976
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 150 ETPSQKDVEPSSVNEVTEVEKDAEDVNKRRKKELELTVKSALSAAFSKYADKMGKKKNTL 209
E +++ S N ++E+ +++ K + +ELE VKS A S K+G+ + L
Sbjct: 1772 ELAAERSAAQKSDNARQQLERQNKEL-KAKLQELEGAVKSKFKATISALEAKIGQLEEQL 1830
Query: 210 SAEVGETSASNSGAKNSD 227
E E +A+N + ++
Sbjct: 1831 EQEAKERAAANKLVRRTE 1848
>sp|Q9JLT0|MYH10_RAT Myosin-10 OS=Rattus norvegicus GN=Myh10 PE=1 SV=1
Length = 1976
Score = 31.6 bits (70), Expect = 5.0, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 150 ETPSQKDVEPSSVNEVTEVEKDAEDVNKRRKKELELTVKSALSAAFSKYADKMGKKKNTL 209
E +++ S N ++E+ +++ K + +ELE VKS A S K+G+ + L
Sbjct: 1772 ELAAERSAAQKSDNARQQLERQNKEL-KAKLQELEGAVKSKFKATISALEAKIGQLEEQL 1830
Query: 210 SAEVGETSASNSGAKNSD 227
E E +A+N + ++
Sbjct: 1831 EQEAKERAAANKLVRRTE 1848
>sp|P35580|MYH10_HUMAN Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3
Length = 1976
Score = 31.6 bits (70), Expect = 5.0, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 150 ETPSQKDVEPSSVNEVTEVEKDAEDVNKRRKKELELTVKSALSAAFSKYADKMGKKKNTL 209
E +++ S N ++E+ +++ K + +ELE VKS A S K+G+ + L
Sbjct: 1772 ELAAERSAAQKSDNARQQLERQNKEL-KAKLQELEGAVKSKFKATISALEAKIGQLEEQL 1830
Query: 210 SAEVGETSASNSGAKNSD 227
E E +A+N + ++
Sbjct: 1831 EQEAKERAAANKLVRRTE 1848
>sp|Q91187|RAG1_ONCMY V(D)J recombination-activating protein 1 OS=Oncorhynchus mykiss
GN=rag1 PE=3 SV=1
Length = 1073
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 132 CPGIGERKHVVSSHPPIPETPSQKDVEPSSVNEVTEVEKDAEDVNKRRKKELELTVKSAL 191
C G+G+ PP+PE P + SV+ E E +A + + K E++ K L
Sbjct: 632 CDGMGDVSEKHGGGPPVPEKPVRFSFTIMSVSIQAEGEDEAITIFREPKPNSEMSCK-PL 690
Query: 192 SAAFSKYADKMGKKKNTLSAEVGETSASNSGAKNS 226
S F +D TL+ +G A + K+S
Sbjct: 691 SLMFVDESD-----HETLTGVLGPVVAERNAMKHS 720
>sp|Q8K2F0|BRD3_MOUSE Bromodomain-containing protein 3 OS=Mus musculus GN=Brd3 PE=1 SV=2
Length = 726
Score = 31.2 bits (69), Expect = 7.2, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 128 DLSHCPG--IGERKHVVSSHPPIPETPSQKDVEPSSVNEVTEVEKDAEDVNKRRKKELEL 185
D++ PG +G H++ S PS +D P E+E D E + +ELE
Sbjct: 584 DINRLPGEKLGRVVHIIQS-----REPSLRDSNPD------EIEIDFETLKPTTLRELER 632
Query: 186 TVKSALSAAFSKYADKMGKKKNTLSAE 212
VKS L K GKK+ S E
Sbjct: 633 YVKSCLQKKQRKPLSTSGKKQAAKSKE 659
>sp|Q15059|BRD3_HUMAN Bromodomain-containing protein 3 OS=Homo sapiens GN=BRD3 PE=1 SV=1
Length = 726
Score = 30.8 bits (68), Expect = 7.5, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 128 DLSHCPG--IGERKHVVSSHPPIPETPSQKDVEPSSVNEVTEVEKDAEDVNKRRKKELEL 185
D++ PG +G H++ S PS +D P E+E D E + +ELE
Sbjct: 583 DINRLPGEKLGRVVHIIQS-----REPSLRDSNPD------EIEIDFETLKPTTLRELER 631
Query: 186 TVKSALSAAFSKYADKMGKKKNTLSAE 212
VKS L K GKK+ S E
Sbjct: 632 YVKSCLQKKQRKPFSASGKKQAAKSKE 658
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,859,644
Number of Sequences: 539616
Number of extensions: 3610761
Number of successful extensions: 10283
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 10201
Number of HSP's gapped (non-prelim): 128
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)