BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045826
(584 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 221 bits (563), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 202/327 (61%), Gaps = 15/327 (4%)
Query: 63 LGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKK 122
LG+GW +FLK + + + V ++SPR+YF FTPLLPS GTV+ +SI+EPI N KK
Sbjct: 48 LGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKK 107
Query: 123 GMDIQFKEAECYKIDAEKKQIYCRT---------TEDRTCGGKEEFA-LDYDILVIAMGA 172
++ + EAE I+ ++ + ++ E+ + E A + YD L+ A+GA
Sbjct: 108 KGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGA 167
Query: 173 QANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGP 232
+ NTF PGV ++ HFLKE+ ++ IRR+ E+A+L D ER+++L VVVGGGP
Sbjct: 168 EPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGP 227
Query: 233 TGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGI 292
TGVE A L D+V DL K P+L E +I L+EA +LNMF+K++++ A+ + I
Sbjct: 228 TGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSI 287
Query: 293 DLKTGSMVVKLSDKEISTKDR-ATGQIS--SIPYGMVVWSTGIGTRPVIMDFMKQIGQAN 349
+ + V K+ +K++ K + G+I+ +IPYG ++W+TG RPVI D K+I + N
Sbjct: 288 KVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQN 347
Query: 350 --RRVLATDEWLRVEGCESVYALGDCA 374
+R LA +++L+V+G +++A+GD A
Sbjct: 348 SSKRGLAVNDFLQVKGSNNIFAIGDNA 374
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 462 DSQMKHLPATAQVAAQEGAYLANCFNRMEQC---EKNPEG-----PLRFRGAGRHRFHPF 513
D+ LP TAQVA QE YLA F++M Q +KN L F + F PF
Sbjct: 372 DNAFAGLPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFE---ENNFKPF 428
Query: 514 RYKHFGQFAPLGGEEAAAQLELPFDWISVGRG--SQWLWYSVYASKQISWRTRFLVISDW 571
+Y G A LG E A A + G G + +LW +Y S +S R+R V DW
Sbjct: 429 KYNDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDW 488
Query: 572 RRRFMFGRD 580
+ F RD
Sbjct: 489 IKLAFFKRD 497
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 202/327 (61%), Gaps = 15/327 (4%)
Query: 63 LGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKK 122
LG+GW +FLK + + + V ++SPR+YF FTPLLPS GTV+ +SI+EPI N KK
Sbjct: 17 LGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKK 76
Query: 123 GMDIQFKEAECYKIDAEKKQIYCRT---------TEDRTCGGKEEFA-LDYDILVIAMGA 172
++ + EAE I+ ++ + ++ E+ + E A + YD L+ A+GA
Sbjct: 77 KGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGA 136
Query: 173 QANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGP 232
+ NTF PGV ++ HFLKE+ ++ IRR+ E+A+L D ER+++L VVVGGGP
Sbjct: 137 EPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGP 196
Query: 233 TGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGI 292
TGVE A L D+V DL K P+L E +I L+EA +LNMF+K++++ A+ + I
Sbjct: 197 TGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSI 256
Query: 293 DLKTGSMVVKLSDKEISTKDR-ATGQIS--SIPYGMVVWSTGIGTRPVIMDFMKQIGQAN 349
+ + V K+ +K++ K + G+I+ +IPYG ++W+TG RPVI D K+I + N
Sbjct: 257 KVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQN 316
Query: 350 --RRVLATDEWLRVEGCESVYALGDCA 374
+R LA +++L+V+G +++A+GD A
Sbjct: 317 SSKRGLAVNDFLQVKGSNNIFAIGDNA 343
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 462 DSQMKHLPATAQVAAQEGAYLANCFNRMEQC---EKNPEG-----PLRFRGAGRHRFHPF 513
D+ LP TAQVA QE YLA F++M Q +KN L F + F PF
Sbjct: 341 DNAFAGLPPTAQVAHQEAEYLAKNFDKMAQIPNFQKNLSSRKDKIDLLFE---ENNFKPF 397
Query: 514 RYKHFGQFAPLGGEEAAAQLELPFDWISVGRG--SQWLWYSVYASKQISWRTRFLVISDW 571
+Y G A LG E A A + G G + +LW +Y S +S R+R V DW
Sbjct: 398 KYNDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDW 457
Query: 572 RRRFMFGRD 580
+ F RD
Sbjct: 458 IKLAFFKRD 466
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 121/286 (42%), Gaps = 52/286 (18%)
Query: 98 LPSVTNGTVEA--RSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGG 155
LP V +G + + + I ++ K G+D + + E K+D EKK +Y T+
Sbjct: 80 LPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRH-EVTKVDTEKKIVYAEHTKT----- 133
Query: 156 KEEFALDYDILVIAMGAQANTFNTPGV-VEHAHFLKEVEHAQRIRRSVIDCFERASLPNL 214
K+ F YD L+IA G + G ++ H LK + A+RI +++
Sbjct: 134 KDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTL------------ 181
Query: 215 SDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM 274
E K+ ++GGG G+E A FV +L K ++ ++E DHI +
Sbjct: 182 ---ETNKVEDVTIIGGGAIGLEMAET---FV--ELGK---------KVRMIERNDHIGTI 224
Query: 275 FDKRITASAEEKFKRDGIDLKTGSMVVKLSDKE---ISTKDRATGQISSIPYGMVVWSTG 331
+D + ++ + I++ T V E D+ T Y +
Sbjct: 225 YDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGT-------YKADLVLVS 277
Query: 332 IGTRPVIMDFMK--QIGQANRRVLATDEWLRVEGCESVYALGDCAT 375
+G +P DF++ I ++ + + +++ + VYA GDCAT
Sbjct: 278 VGVKPNT-DFLEGTNIRTNHKGAIEVNAYMQTN-VQDVYAAGDCAT 321
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 22/153 (14%)
Query: 225 FVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAE 284
VV+GGG G+E A +F T++T+LE IL+ F+K++ A +
Sbjct: 173 LVVIGGGYIGIELGTAYANF--------------GTKVTILEGAGEILSGFEKQMAAIIK 218
Query: 285 EKFKRDGIDLKTGSMVVKLSDKE--ISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDF- 341
++ K+ G+++ T ++ ++E ++ A G+ +I V+ + +G RP +
Sbjct: 219 KRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT--VGRRPNTDELG 276
Query: 342 MKQIG--QANRRVLATDEWLRVEGCESVYALGD 372
++QIG NR ++ D+ R +++A+GD
Sbjct: 277 LEQIGIKMTNRGLIEVDQQCRTS-VPNIFAIGD 308
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 63 LGTGWAGTTFLKILK---SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIV 119
LG G G +K + EV ++S +YF F P P V G E I PIR+ V
Sbjct: 10 LGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYV 69
Query: 120 RKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179
+KG+ + AE +IDAE + I T D + YD L+IA G + N
Sbjct: 70 ERKGIHFIAQSAE--QIDAEAQNI---TLADGNT-------VHYDYLMIATGPKLAFENV 117
Query: 180 PGVVEH---AHFLKEVEHAQR 197
PG H + V+HA+R
Sbjct: 118 PGSDPHEGPVQSISTVDHAER 138
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 118/286 (41%), Gaps = 52/286 (18%)
Query: 98 LPSVTNGTVEA--RSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGG 155
LP V +G + + + I ++ K G+D + + E K+D EKK +Y T+
Sbjct: 80 LPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRH-EVTKVDTEKKIVYAEHTKT----- 133
Query: 156 KEEFALDYDILVIAMGAQANTFNTPGV-VEHAHFLKEVEHAQRIRRSVIDCFERASLPNL 214
K+ F YD L+IA G + G ++ H LK + A+RI +++
Sbjct: 134 KDVFEFSYDRLLIATGVRPVXPEWEGRDLQGVHLLKTIPDAERILKTL------------ 181
Query: 215 SDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM 274
E K+ ++GGG G+E A FV +L K ++ +E DHI +
Sbjct: 182 ---ETNKVEDVTIIGGGAIGLEXAET---FV--ELGK---------KVRXIERNDHIGTI 224
Query: 275 FDKRITASAEEKFKRDGIDLKTGSMVVKLSDKE---ISTKDRATGQISSIPYGMVVWSTG 331
+D ++ + I++ T V E D+ T Y +
Sbjct: 225 YDGDXAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGT-------YKADLVLVS 277
Query: 332 IGTRPVIMDFMK--QIGQANRRVLATDEWLRVEGCESVYALGDCAT 375
+G +P DF++ I ++ + + + + + VYA GDCAT
Sbjct: 278 VGVKPN-TDFLEGTNIRTNHKGAIEVNAYXQTN-VQDVYAAGDCAT 321
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 63 LGTGWAGTTFLKILK---SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIV 119
LG G G +K + EV ++S +YF F P P V G E I PIR+ V
Sbjct: 10 LGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYV 69
Query: 120 RKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179
+KG+ + AE +IDAE + I T D + YD L+IA G + N
Sbjct: 70 ERKGIHFIAQSAE--QIDAEAQNI---TLADGNT-------VHYDYLMIATGPKLAFENV 117
Query: 180 PGVVEH---AHFLKEVEHAQR 197
PG H + V+HA+R
Sbjct: 118 PGSDPHEGPVQSIATVDHAER 138
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 63 LGTGWAGTTFLKILK---SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIV 119
LG G G +K + EV ++S +YF F P P V G E I PIR+ V
Sbjct: 10 LGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYV 69
Query: 120 RKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179
+KG+ + AE +IDAE + I T D + YD L+IA G + N
Sbjct: 70 ERKGIHFIAQSAE--QIDAEAQNI---TLADGNT-------VHYDYLMIATGPKLAFENV 117
Query: 180 PGVVEH---AHFLKEVEHAQR 197
PG H + V+HA+R
Sbjct: 118 PGSDPHEGPVQAICTVDHAER 138
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 63 LGTGWAGTTFLKILK---SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIV 119
LG G G +K + EV ++S +YF F P P V G E I PIR+ V
Sbjct: 10 LGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYV 69
Query: 120 RKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179
+KG+ + AE +IDAE + I T D + YD L+IA G + N
Sbjct: 70 ERKGIHFIAQSAE--QIDAEAQNI---TLADGNT-------VHYDYLMIATGPKLAFENV 117
Query: 180 PGVVEH---AHFLKEVEHAQR 197
PG H + V+HA+R
Sbjct: 118 PGSDPHEGPVQSICTVDHAER 138
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 63 LGTGWAGTTFLKILK---SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIV 119
LG G G +K + EV ++S +YF F P P V G E I PIR+ V
Sbjct: 10 LGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYV 69
Query: 120 RKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179
+KG+ + AE +IDAE + I T D + YD L+IA G + N
Sbjct: 70 ERKGIHFIAQSAE--QIDAEAQNI---TLADGNT-------VHYDYLMIATGPKLAFENV 117
Query: 180 PGVVEH---AHFLKEVEHAQR 197
PG H + V+HA+R
Sbjct: 118 PGSDPHEGPVQSICTVDHAER 138
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 63 LGTGWAGTTFLKILK---SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIV 119
LG G G +K + EV ++S +YF F P P V G E I PIR+ V
Sbjct: 10 LGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYV 69
Query: 120 RKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179
+KG+ + AE +IDAE + I T D + YD L+IA G + N
Sbjct: 70 ERKGIHFIAQSAE--QIDAEAQNI---TLADGNT-------VHYDYLMIATGPKLAFENV 117
Query: 180 PGVVEHAHFLKE---VEHAQR 197
PG H ++ V+HA+R
Sbjct: 118 PGSDPHEGPVQSICTVDHAER 138
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 63 LGTGWAGTTFLKILK---SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIV 119
LG G G +K + EV ++S +YF F P P V G E I PIR+ V
Sbjct: 7 LGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYV 66
Query: 120 RKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179
+KG+ + AE +IDAE + I T D + YD L+IA G + N
Sbjct: 67 ERKGIHFIAQSAE--QIDAEAQNI---TLADGNT-------VHYDYLMIATGPKLAFENV 114
Query: 180 PGVVEH---AHFLKEVEHAQR 197
PG H + V+HA+R
Sbjct: 115 PGSDPHEGPVQSICTVDHAER 135
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 98 LPSVTNGTVEARS--IVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGG 155
LP +G + RS +++ + + ++++ K E ID K + R D +
Sbjct: 45 LPYHISGEIAQRSALVLQTPESFKARFNVEVRVKH-EVVAIDRAAKLVTVRRLLDGS--- 100
Query: 156 KEEFALDYDILVIAMGAQANTFNTPGVVEH-AHFLKEVEHAQRIRRSVIDCFERASLPNL 214
E+ YD L+++ GA PGV H L+ + RI +++
Sbjct: 101 --EYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTI------------ 146
Query: 215 SDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM 274
+ + H VVGGG G+E +LH I + TLLE D ++
Sbjct: 147 ---QMNNVEHATVVGGGFIGLEMMESLHHLGI--------------KTTLLELADQVMTP 189
Query: 275 FDKRITASAEEKFKRDGIDLKTGSMVVKLS 304
D+ + A + + G+DL+ G+ + ++S
Sbjct: 190 VDREMAGFAHQAIRDQGVDLRLGTALSEVS 219
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 64/150 (42%), Gaps = 23/150 (15%)
Query: 63 LGTGWAGTTFLKILK---SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIV 119
LG G G +K + EV ++S +YF F P P V G E I PIR+ V
Sbjct: 7 LGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYV 66
Query: 120 RKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179
+KG+ + AE +IDAE + I T D + YD L+IA G + N
Sbjct: 67 ERKGIHFIAQSAE--QIDAEAQNI---TLADGNT-------VHYDYLMIATGPKLAFENV 114
Query: 180 PGVVEHAHFLKEVEHAQRIRRSVIDCFERA 209
PG H ++ + +D ERA
Sbjct: 115 PGSDPHEGPVQSI--------CTVDAAERA 136
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 98 LPSVTNGTVEARS--IVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGG 155
LP +G + RS +++ + + ++++ K E ID K + R D +
Sbjct: 45 LPYHISGEIAQRSALVLQTPESFKARFNVEVRVKH-EVVAIDRAAKLVTVRRLLDGS--- 100
Query: 156 KEEFALDYDILVIAMGAQANTFNTPGVVEH-AHFLKEVEHAQRIRRSVIDCFERASLPNL 214
E+ YD L+++ GA PGV H L+ + RI +++
Sbjct: 101 --EYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDXDRILQTI------------ 146
Query: 215 SDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM 274
+ + H VVGGG G+E +LH I + TLLE D +
Sbjct: 147 ---QXNNVEHATVVGGGFIGLEXXESLHHLGI--------------KTTLLELADQVXTP 189
Query: 275 FDKRITASAEEKFKRDGIDLKTGSMVVKLS 304
D+ A + + G+DL+ G+ + ++S
Sbjct: 190 VDREXAGFAHQAIRDQGVDLRLGTALSEVS 219
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 98 LPSVTNGTVEARS--IVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGG 155
LP +G + RS +++ + + ++++ K E ID K + R D +
Sbjct: 45 LPYHISGEIAQRSALVLQTPESFKARFNVEVRVKH-EVVAIDRAAKLVTVRRLLDGS--- 100
Query: 156 KEEFALDYDILVIAMGAQANTFNTPGVVEH-AHFLKEVEHAQRIRRSVIDCFERASLPNL 214
E+ YD L+++ GA PGV H L+ + RI +++
Sbjct: 101 --EYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDXDRILQTI------------ 146
Query: 215 SDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM 274
+ + H VVGGG G+E +LH I + TLLE D +
Sbjct: 147 ---QXNNVEHATVVGGGFIGLEXXESLHHLGI--------------KTTLLELADQVXTP 189
Query: 275 FDKRITASAEEKFKRDGIDLKTGSMVVKLS 304
D+ A + + G+DL+ G+ + ++S
Sbjct: 190 VDREXAGFAHQAIRDQGVDLRLGTALSEVS 219
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 132/329 (40%), Gaps = 69/329 (20%)
Query: 63 LGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPI--RNIVR 120
+GTG AG L+++ +E + + LP ++ + ++ E + R
Sbjct: 9 VGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDA 68
Query: 121 KKGMDIQF-KEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179
+IQ + I+ +++Q+ + ALDYD LV+A G +
Sbjct: 69 YAAQNIQLLGGTQVTAINRDRQQVIL----------SDGRALDYDRLVLATGGRPRPLPV 118
Query: 180 P-GVVEHAH---FLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGV 235
G V A+ +L+ +E A+ IRR +I +D VV+GGG G+
Sbjct: 119 ASGAVGKANNFRYLRTLEDAECIRRQLI-----------ADN------RLVVIGGGYIGL 161
Query: 236 EFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKF-----KRD 290
E AA ++K +TLL+ +L +R+TA F +
Sbjct: 162 EVAAT--------------AIKANMHVTLLDTAARVL----ERVTAPPVSAFYEHLHREA 203
Query: 291 GIDLKTGSMVVKLSDKEISTKDRATGQI-----SSIPYGMVVWSTGIGTRPVIMDFMKQI 345
G+D++TG+ V E+ST + + + +P +V+ GIG P +
Sbjct: 204 GVDIRTGTQVCGF---EMSTDQQKVTAVLCEDGTRLPADLVI--AGIGLIPN-CELASAA 257
Query: 346 GQANRRVLATDEWLRVEGCESVYALGDCA 374
G + +E ++ + A+GDCA
Sbjct: 258 GLQVDNGIVINEHMQTSD-PLIMAVGDCA 285
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 128/299 (42%), Gaps = 53/299 (17%)
Query: 119 VRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178
+ +G+++ F E I ++ Q+ T +D G EE +YD L+I+ GA +
Sbjct: 66 MESRGVNV-FSNTEITAIQPKEHQV---TVKDLVSG--EERVENYDKLIISPGAVPFELD 119
Query: 179 TPGV-VEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEF 237
PG +++ + ++ + A ++++ +D ++ + VV+G G G+E
Sbjct: 120 IPGKDLDNIYLMRGRQWAIKLKQKTVD---------------PEVNNVVVIGSGYIGIEA 164
Query: 238 AAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF-DKRITASAEEKFKRDGIDLKT 296
A A K ++T+++ D L ++ DK T E+ + + I + T
Sbjct: 165 AEAFA--------------KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIAT 210
Query: 297 GSMVVKLSD----KEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRV 352
G V + +++ T A Y + +G RP + +
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA--------YDADLVVVAVGVRPNTAWLKGTLELHPNGL 262
Query: 353 LATDEWLRVEGCESVYALGDCATINQRKVMEDIS-AIFSKADKNNTGKLNVKDLKEVVK 410
+ TDE++R + V+A+GD I +++ A+ + A K G+ VK+L+E VK
Sbjct: 263 IKTDEYMRTSEPD-VFAVGDATLIKYNPADTEVNIALATNARKQ--GRFAVKNLEEPVK 318
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 128/299 (42%), Gaps = 53/299 (17%)
Query: 119 VRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178
+ +G+++ F E I ++ Q+ T +D G EE +YD L+I+ GA +
Sbjct: 66 MESRGVNV-FSNTEITAIQPKEHQV---TVKDLVSG--EERVENYDKLIISPGAVPFELD 119
Query: 179 TPGV-VEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEF 237
PG +++ + ++ + A ++++ +D ++ + VV+G G G+E
Sbjct: 120 IPGKDLDNIYLMRGRQWAIKLKQKTVD---------------PEVNNVVVIGSGYIGIEA 164
Query: 238 AAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF-DKRITASAEEKFKRDGIDLKT 296
A A K ++T+++ D L ++ DK T E+ + + I + T
Sbjct: 165 AEAFA--------------KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIAT 210
Query: 297 GSMVVKLSD----KEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRV 352
G V + +++ T A Y + +G RP + +
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA--------YDADLVVVAVGVRPNTAWLKGTLELHPNGL 262
Query: 353 LATDEWLRVEGCESVYALGDCATINQRKVMEDIS-AIFSKADKNNTGKLNVKDLKEVVK 410
+ TDE++R + V+A+GD I +++ A+ + A K G+ VK+L+E VK
Sbjct: 263 IKTDEYMRTSEPD-VFAVGDATLIKYNPADTEVNIALATNARKQ--GRFAVKNLEEPVK 318
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 132/329 (40%), Gaps = 69/329 (20%)
Query: 63 LGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPI--RNIVR 120
+GTG AG L+++ +E + + LP ++ + ++ E + R
Sbjct: 10 VGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDA 69
Query: 121 KKGMDIQF-KEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179
+IQ + I+ +++Q+ + ALDYD LV+A G +
Sbjct: 70 YAAQNIQLLGGTQVTAINRDRQQVIL----------SDGRALDYDRLVLATGGRPRPLPV 119
Query: 180 P-GVVEHAH---FLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGV 235
G V A+ +L+ +E A+ IRR +I +D VV+GGG G+
Sbjct: 120 ASGAVGKANNFRYLRTLEDAECIRRQLI-----------ADN------RLVVIGGGYIGL 162
Query: 236 EFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKF-----KRD 290
E AA ++K +TLL+ +L +R+TA F +
Sbjct: 163 EVAAT--------------AIKANMHVTLLDTAARVL----ERVTAPPVSAFYEHLHREA 204
Query: 291 GIDLKTGSMVVKLSDKEISTKDRATGQI-----SSIPYGMVVWSTGIGTRPVIMDFMKQI 345
G+D++TG+ V E+ST + + + +P +V+ GIG P +
Sbjct: 205 GVDIRTGTQVCGF---EMSTDQQKVTAVLCEDGTRLPADLVI--AGIGLIPN-CELASAA 258
Query: 346 GQANRRVLATDEWLRVEGCESVYALGDCA 374
G + +E ++ + A+GDCA
Sbjct: 259 GLQVDNGIVINEHMQTSD-PLIMAVGDCA 286
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 128/299 (42%), Gaps = 53/299 (17%)
Query: 119 VRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178
+ +G+++ F E I ++ Q+ T +D G EE +YD L+I+ GA +
Sbjct: 66 MESRGVNV-FSNTEITAIQPKEHQV---TVKDLVSG--EERVENYDKLIISPGAVPFELD 119
Query: 179 TPGV-VEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEF 237
PG +++ + ++ + A ++++ +D ++ + VV+G G G+E
Sbjct: 120 IPGKDLDNIYLMRGRQWAIKLKQKTVD---------------PEVNNVVVIGSGYIGIEA 164
Query: 238 AAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF-DKRITASAEEKFKRDGIDLKT 296
A A K ++T+++ D L ++ DK T E+ + + I + T
Sbjct: 165 AEAFA--------------KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIAT 210
Query: 297 GSMVVKLSD----KEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRV 352
G V + +++ T A Y + +G RP + +
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA--------YDADLVVVAVGVRPNTAWLKGTLELHPNGL 262
Query: 353 LATDEWLRVEGCESVYALGDCATINQRKVMEDIS-AIFSKADKNNTGKLNVKDLKEVVK 410
+ TDE++R + V+A+GD I +++ A+ + A K G+ VK+L+E VK
Sbjct: 263 IKTDEYMRTSEPD-VFAVGDATLIKYNPADTEVNIALATNARKQ--GRFAVKNLEEPVK 318
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 128/299 (42%), Gaps = 53/299 (17%)
Query: 119 VRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178
+ +G+++ F E I ++ Q+ T +D G EE +YD L+I+ GA +
Sbjct: 66 MESRGVNV-FSNTEITAIQPKEHQV---TVKDLVSG--EERVENYDKLIISPGAVPFELD 119
Query: 179 TPGV-VEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEF 237
PG +++ + ++ + A ++++ +D ++ + VV+G G G+E
Sbjct: 120 IPGKDLDNIYLMRGRQWAIKLKQKTVD---------------PEVNNVVVIGSGYIGIEA 164
Query: 238 AAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF-DKRITASAEEKFKRDGIDLKT 296
A A K ++T+++ D L ++ DK T E+ + + I + T
Sbjct: 165 AEAFA--------------KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIAT 210
Query: 297 GSMVVKLSD----KEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRV 352
G V + +++ T A Y + +G RP + +
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA--------YDADLVVVAVGVRPNTAWLKGTLELHPNGL 262
Query: 353 LATDEWLRVEGCESVYALGDCATINQRKVMEDIS-AIFSKADKNNTGKLNVKDLKEVVK 410
+ TDE++R + V+A+GD I +++ A+ + A K G+ VK+L+E VK
Sbjct: 263 IKTDEYMRTSEPD-VFAVGDATLIKYNPADTEVNIALATNARKQ--GRFAVKNLEEPVK 318
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 128/299 (42%), Gaps = 53/299 (17%)
Query: 119 VRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178
+ +G+++ F E I ++ Q+ T +D G EE +YD L+I+ GA +
Sbjct: 66 MESRGVNV-FSNTEITAIQPKEHQV---TVKDLVSG--EERVENYDKLIISPGAVPFELD 119
Query: 179 TPGV-VEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEF 237
PG +++ + ++ + A ++++ +D ++ + VV+G G G+E
Sbjct: 120 IPGKDLDNIYLMRGRQWAIKLKQKTVD---------------PEVNNVVVIGSGYIGIEA 164
Query: 238 AAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF-DKRITASAEEKFKRDGIDLKT 296
A A K ++T+++ D L ++ DK T E+ + + I + T
Sbjct: 165 AEAFA--------------KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIAT 210
Query: 297 GSMVVKLSD----KEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRV 352
G V + +++ T A Y + +G RP + +
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA--------YDADLVVVAVGVRPNTAWLKGTLELHPNGL 262
Query: 353 LATDEWLRVEGCESVYALGDCATINQRKVMEDIS-AIFSKADKNNTGKLNVKDLKEVVK 410
+ TDE++R + V+A+GD I +++ A+ + A K G+ VK+L+E VK
Sbjct: 263 IKTDEYMRTSEPD-VFAVGDATLIKYNPADTEVNIALATNARKQ--GRFAVKNLEEPVK 318
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 20/165 (12%)
Query: 227 VVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEK 286
+VG G VE + ID + G+ IL FD+ + E
Sbjct: 181 IVGSGYIAVELINVIKRLGIDSY--------------IFARGNRILRKFDESVINVLEND 226
Query: 287 FKRDGIDLKTGSMVV---KLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMK 343
K++ I++ T + VV K+SDK +S + G+I + V++ G + K
Sbjct: 227 MKKNNINIVTFADVVEIKKVSDKNLSIH-LSDGRIYE-HFDHVIYCVGRSPDTENLKLEK 284
Query: 344 QIGQANRRVLATDEWLRVEGCESVYALGDCATINQRKVMEDISAI 388
+ N + DE R ++YA+GDC + + K +ED++ +
Sbjct: 285 LNVETNNNYIVVDENQRT-SVNNIYAVGDCCMVKKSKEIEDLNLL 328
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 128/299 (42%), Gaps = 53/299 (17%)
Query: 119 VRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178
+ +G+++ F E I ++ Q+ T +D G EE +YD L+I+ GA +
Sbjct: 66 MESRGVNV-FSNTEITAIQPKEHQV---TVKDLVSG--EERVENYDKLIISPGAVPFELD 119
Query: 179 TPGV-VEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEF 237
PG +++ + ++ + A ++++ +D ++ + VV+G G G+E
Sbjct: 120 IPGKDLDNIYLMRGRQWAIKLKQKTVD---------------PEVNNVVVIGSGYIGIEA 164
Query: 238 AAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF-DKRITASAEEKFKRDGIDLKT 296
A A K ++T+++ D L ++ DK T E+ + + I + T
Sbjct: 165 AEAFA--------------KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIAT 210
Query: 297 GSMVVKLSD----KEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRV 352
G V + +++ T A Y + +G RP + +
Sbjct: 211 GETVERYEGDGRVQKVVTDKNA--------YDADLVVVAVGVRPNTAWLKGTLELHPNGL 262
Query: 353 LATDEWLRVEGCESVYALGDCATINQRKVMEDIS-AIFSKADKNNTGKLNVKDLKEVVK 410
+ TDE++R + V+A+GD I +++ A+ + A K G+ VK+L+E VK
Sbjct: 263 IKTDEYMRTSEPD-VFAVGDATLIKYNPADTEVNIALATNAMKQ--GRFAVKNLEEPVK 318
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 27/155 (17%)
Query: 226 VVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEE 285
VV+GGG G+E AA L F ++ +TLLEA +L R+ A
Sbjct: 156 VVIGGGYIGLEAAAVLTKFGVN--------------VTLLEALPRVL----ARVAGEALS 197
Query: 286 KF-----KRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMD 340
+F + G+DL+TG+ + + S IP +V+ GIG P +
Sbjct: 198 EFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVI--VGIGIVPCVGA 255
Query: 341 FMKQIGQANRRVLATDEWLRVEGCESVYALGDCAT 375
+ G + + DE+ R VYA+GDCA
Sbjct: 256 LISA-GASGGNGVDVDEFCRTS-LTDVYAIGDCAA 288
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 69/180 (38%), Gaps = 44/180 (24%)
Query: 225 FVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAE 284
+VVGGG G+E H + +LE D IL D ++ +AE
Sbjct: 170 LIVVGGGVIGLELGVVWHRL--------------GAEVIVLEYMDRILPTMDLEVSRAAE 215
Query: 285 EKFKRDGIDLKTGSMV-----------VKLSDKEISTKDRATGQISSIPY--GMVVWSTG 331
FK+ G+ ++TG V V+L E+ DR + PY G+ + + G
Sbjct: 216 RVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAG 275
Query: 332 IGTRPVIMDFMKQIGQANRRVLATDEWLRVEGCESVYALGDCA---TINQRKVMEDISAI 388
+ T R + DE LR +YA+GD + + E I+A+
Sbjct: 276 LSTD-------------ERGRIPVDEHLRTR-VPHIYAIGDVVRGPMLAHKASEEGIAAV 321
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 73 LKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAE 132
LK L + +V+V++ + F P LP V G + + + + +KG IQF+E
Sbjct: 20 LKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKG--IQFQEGT 77
Query: 133 CYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEV 192
KIDA+ +Y T D + +E YD +++ +GA T G ++ + + E
Sbjct: 78 VEKIDAKSSMVY-YTKPDGSMAEEE-----YDYVIVGIGAHLATELVKGWDKYGYSVCEP 131
Query: 193 EHAQRIRRSV 202
E A ++R +
Sbjct: 132 EFATKLREKL 141
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 115/315 (36%), Gaps = 67/315 (21%)
Query: 78 SNSFEVQVVSPRNYFAFTPL-LPSVTNGTVEARS--IVEPIRNIVRKKGMDIQFKEAECY 134
S E+ V Y +F LP G + R +V+ + ++ +DI+ +E
Sbjct: 59 SEEDEIIXVERGEYISFANCGLPYYIGGVITERQKLLVQTVERXSKRFNLDIRVL-SEVV 117
Query: 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHF--LKEV 192
KI+ E+K I + E + YD+L+++ GA+ + PG+ E L+ V
Sbjct: 118 KINKEEKTITIKNVTT-----NETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNV 172
Query: 193 EHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKL 252
RI+ + + KK H V+GGG GVE L + I+
Sbjct: 173 PDTDRIKAYI---------------DEKKPRHATVIGGGFIGVEXVENLRERGIE----- 212
Query: 253 YPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKR--------DGID-LKTGSMVVKL 303
+TL+E + + D A E K DG+D L+ VV+L
Sbjct: 213 ---------VTLVEXANQVXPPIDYEXAAYVHEHXKNHDVELVFEDGVDALEENGAVVRL 263
Query: 304 SDKEISTKDRATGQISSIPYGMVVWSTG--IGTRPVIMDFMKQIGQANRRVLATDEWLRV 361
+ D I P + G +G R I + N + +D
Sbjct: 264 KSGSVIQTDXLILAIGVQPESSLAKGAGLALGVRGTI--------KVNEKFQTSD----- 310
Query: 362 EGCESVYALGDCATI 376
+YA+GD +
Sbjct: 311 ---PHIYAIGDAIEV 322
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 20/153 (13%)
Query: 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASA 283
H VVVGGG G+E A K +++++EA + IL +D +TA
Sbjct: 173 HLVVVGGGYIGLELGIAYR--------------KLGAQVSVVEARERILPTYDSELTAPV 218
Query: 284 EEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMK 343
E K+ GI L G V + + D GQ+ ++V +G RP F
Sbjct: 219 AESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLV---AVGRRPRTKGFNL 275
Query: 344 QI--GQANRRVLATDEWLRVEGCESVYALGDCA 374
+ + N +A DE + +V+A+GD A
Sbjct: 276 ECLDLKMNGAAIAIDERCQTS-MHNVWAIGDVA 307
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 81 FEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEK 140
++ ++S R YF FTP P + G + I P+ ++ K +I+F + ID +
Sbjct: 28 LKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPK--FNIEFINEKAESIDPDA 85
Query: 141 KQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRR 200
+ T GK+ ++YD LVIA G + F G E++ + EHA ++
Sbjct: 86 NTV-------TTQSGKK---IEYDYLVIATGPKL-VFGAEGQEENSTSICTAEHALETQK 134
Query: 201 SVIDCF 206
+ + +
Sbjct: 135 KLQELY 140
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 81 FEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEK 140
++ ++S R YF FTP P + G + I P+ ++ K +I+F + ID +
Sbjct: 28 LKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPK--FNIEFINEKAESIDPDA 85
Query: 141 KQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRR 200
+ T GK+ ++YD LVIA G + F G E++ + EHA ++
Sbjct: 86 NTV-------TTQSGKK---IEYDYLVIATGPKL-VFGAEGQEENSTSICTAEHALETQK 134
Query: 201 SVIDCF 206
+ + +
Sbjct: 135 KLQELY 140
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 114/309 (36%), Gaps = 71/309 (22%)
Query: 161 LDYDILVIAMGAQANTFNT-PGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEER 219
L Y LV+A GA T G H L+ +E A+RI+ L + R
Sbjct: 100 LPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQA------------GLRPQSR 147
Query: 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRI 279
++VGGG G+E AA + ++ SL E + A L F R
Sbjct: 148 -----LLIVGGGVIGLELAATART------AGVHVSLVETQPRLMSRAAPATLADFVARY 196
Query: 280 TASAEEKFKRDGIDLK-----TGSM--VVKLSDKEISTKDRATGQISSIPYGMVVWSTGI 332
A+ G+DL+ TGS+ VV L D + I MVV G+
Sbjct: 197 HAA-------QGVDLRFERSVTGSVDGVVLLDDG------------TRIAADMVVVGIGV 237
Query: 333 GTRPVIMDFMKQIGQANRRVLATDEWLRVEG-----CESVYALGDCATINQRKVMEDISA 387
+ A LA D+ + V+ C VYALGD QR +S
Sbjct: 238 ---------LANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDV--TRQRN---PLSG 283
Query: 388 IFSKADK-NNTGKLNVKDLKEVVKDICERYPQVEIYLNKKQLKNINVL-LKNAEEDPKKA 445
F + + +N + + +V Y ++ Y + + I V L + +E+ +
Sbjct: 284 RFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYFSDQGALRIQVAGLASGDEEIVRG 343
Query: 446 SMEFDIEKF 454
+ D KF
Sbjct: 344 EVSLDAPKF 352
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 114/309 (36%), Gaps = 71/309 (22%)
Query: 161 LDYDILVIAMGAQANTFNT-PGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEER 219
L Y LV+A GA T G H L+ +E A+RI+ L + R
Sbjct: 100 LPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQA------------GLRPQSR 147
Query: 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRI 279
++VGGG G+E AA + ++ SL E + A L F R
Sbjct: 148 -----LLIVGGGVIGLELAATART------AGVHVSLVETQPRLMSRAAPATLADFVARY 196
Query: 280 TASAEEKFKRDGIDLK-----TGSM--VVKLSDKEISTKDRATGQISSIPYGMVVWSTGI 332
A+ G+DL+ TGS+ VV L D + I MVV G+
Sbjct: 197 HAA-------QGVDLRFERSVTGSVDGVVLLDDG------------TRIAADMVVVGIGV 237
Query: 333 GTRPVIMDFMKQIGQANRRVLATDEWLRVEG-----CESVYALGDCATINQRKVMEDISA 387
+ A LA D+ + V+ C VYALGD QR +S
Sbjct: 238 ---------LANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDV--TRQRN---PLSG 283
Query: 388 IFSKADK-NNTGKLNVKDLKEVVKDICERYPQVEIYLNKKQLKNINVL-LKNAEEDPKKA 445
F + + +N + + +V Y ++ Y + + I V L + +E+ +
Sbjct: 284 RFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRG 343
Query: 446 SMEFDIEKF 454
+ D KF
Sbjct: 344 EVSLDAPKF 352
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 37/161 (22%)
Query: 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASA 283
H +VVG G TG EF A + + +T++ + DH+L D
Sbjct: 184 HLIVVGSGVTGAEFVDAYTELGVP--------------VTVVASQDHVLPYEDADAALVL 229
Query: 284 EEKFKRDGIDL----------KTGS-MVVKLSDKEISTKDRATGQISSIPYGMVVWSTGI 332
EE F G+ L +TG+ ++V ++D A I S+P ++G+
Sbjct: 230 EESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPN-----TSGL 284
Query: 333 GTRPVIMDFMKQIGQANRRVLATDEWLRVEGCESVYALGDC 373
G V + Q+G+ N L D R +YA GDC
Sbjct: 285 GLERVGI----QLGRGN--YLTVDRVSRTL-ATGIYAAGDC 318
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 124/326 (38%), Gaps = 68/326 (20%)
Query: 63 LGTGWAGTTFLKILKSNSFE--VQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVR 120
+G G G T + L++ FE + ++ + + PS++ ++ PI
Sbjct: 8 IGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDR--PSLSKAVLDGSLERPPI----- 60
Query: 121 KKGMDIQFKEAECY---KIDA-EKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANT 176
EA+ Y +ID ++ + RT + L D +VIA G++A T
Sbjct: 61 -------LAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRART 113
Query: 177 FNTPGV-VEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGV 235
PG + L+ Q +R D + A+ ++VGGG G
Sbjct: 114 MALPGSQLPGVVTLRTYGDVQVLR----DSWTSAT-------------RLLIVGGGLIGC 156
Query: 236 EFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-NMFDKRITASAEEKFKRDGIDL 294
E A + +T+LEAGD +L + +RI A G+ +
Sbjct: 157 EVATTARKLGLS--------------VTILEAGDELLVRVLGRRIGAWLRGLLTELGVQV 202
Query: 295 KTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLA 354
+ G+ VV S + + A+ S + ++ +G P +Q G LA
Sbjct: 203 ELGTGVVGFSGEGQLEQVMASDGRSFVADSALIC---VGAEPA-DQLARQAG------LA 252
Query: 355 TDEWLRVEGC-----ESVYALGDCAT 375
D + V+ C + V+A+GD A+
Sbjct: 253 CDRGVIVDHCGATLAKGVFAVGDVAS 278
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 97/257 (37%), Gaps = 54/257 (21%)
Query: 130 EAECYKIDAEKKQI---YCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGV---- 182
E + ID + RT E RT L YD LV+A+G++AN G+
Sbjct: 86 ETRAHAIDRAAHTVEIENLRTGERRT--------LKYDKLVLALGSKANRPPVEGMDLAG 137
Query: 183 VEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALH 242
V L E E Q +S E K V+VGGG G+E A +L
Sbjct: 138 VTPVTNLDEAEFVQHA---------------ISAGEVSKA---VIVGGGFIGLEMAVSLA 179
Query: 243 DFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF-DKRITASAEEKFKRDGIDLKTGSMVV 301
D D T++E D I+ F K ++ +++ + + TG VV
Sbjct: 180 DMWGID-------------TTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVV 226
Query: 302 KLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQA--NRRVLATDEWL 359
+L + E R ++ +V+ + G+ + G R + D +
Sbjct: 227 RL-EGENGKVARVITDKRTLDADLVILAAGVSPN---TQLARDAGLELDPRGAIIVDTRM 282
Query: 360 RVEGCESVYALGDCATI 376
R + ++A GDC TI
Sbjct: 283 RTSDPD-IFAGGDCVTI 298
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 45/221 (20%)
Query: 160 ALDYDILVIAMGAQANTFNTPGV-VEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEE 218
A++Y LV+A GA+ + P + +L+ ++ ++ +R+ + D
Sbjct: 96 AIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPD-------------- 141
Query: 219 RKKILHFVVVGGGPTGVEFAAALHDFVID-DLSKLYPSLKEFTRITLLEAGDHILNMFDK 277
KK H VV+G G G+EFAA ++ D+ +L P + R+ E
Sbjct: 142 -KK--HVVVIGAGFIGLEFAATARAKGLEVDVVELAP--RVMARVVTPE----------- 185
Query: 278 RITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQI----SSIPYGMVVWSTGIG 333
I++ ++ GI + G +++ + DR TG + +++P +VV G+G
Sbjct: 186 -ISSYFHDRHSGAGIRMHYGVRATEIA----AEGDRVTGVVLSDGNTLPCDLVV--VGVG 238
Query: 334 TRPVIMDFMKQIGQANRRVLATDEWLRVEGCESVYALGDCA 374
P + ++ + L + + A+GDCA
Sbjct: 239 VIPNVEIAAAAGLPTAAGIIVDQQLLTSD--PHISAIGDCA 277
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 16/158 (10%)
Query: 216 DEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF 275
DE K+ L VGGG +EFA + + ++ L GD IL F
Sbjct: 184 DEAPKRAL---CVGGGYISIEFAGIFNAY-----------KARGGQVDLAYRGDMILRGF 229
Query: 276 DKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTR 335
D + E+ + +GI+++T K++ T+ + Y +V+ + G R
Sbjct: 230 DSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPR 289
Query: 336 PVIMDFMKQ-IGQANRRVLATDEWLRVEGCESVYALGD 372
+ K + A + D + + +++YA+GD
Sbjct: 290 SQTLQLEKAGVEVAKNGAIKVDAYSKTN-VDNIYAIGD 326
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 16/158 (10%)
Query: 216 DEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF 275
DE K+ L VGGG +EFA + + ++ L GD IL F
Sbjct: 184 DEAPKRAL---CVGGGYISIEFAGIFNAY-----------KARGGQVDLAYRGDMILRGF 229
Query: 276 DKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTR 335
D + E+ + +GI+++T K++ T+ + Y +V+ + G R
Sbjct: 230 DSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPR 289
Query: 336 PVIMDFMKQ-IGQANRRVLATDEWLRVEGCESVYALGD 372
+ K + A + D + + +++YA+GD
Sbjct: 290 SQTLQLEKAGVEVAKNGAIKVDAYSKTN-VDNIYAIGD 326
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 47/191 (24%)
Query: 209 ASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAG 268
A++P L + + V+G GP G E ID L K ++ F E+
Sbjct: 139 AAVPLLENSQT-----VAVIGAGPIGXE--------AIDFLVKXKKTVHVF------ESL 179
Query: 269 DHIL-NMFDKRITASAEEKFKRD-----------GIDLKTGSMVVKLSDKEISTKDRATG 316
+++L FDK A ++ ++ GI+ +V++ S++EIS
Sbjct: 180 ENLLPKYFDKEXVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQEISCDS---- 235
Query: 317 QISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEWLRVEGCESVYALGDCATI 376
G+ + P + K+I + + +A D +L+ +V+A+GDC ++
Sbjct: 236 -------GIF----ALNLHPQLAYLDKKIQRNLDQTIAVDAYLQT-SVPNVFAIGDCISV 283
Query: 377 NQRKVMEDISA 387
V E A
Sbjct: 284 XNEPVAETFYA 294
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 16/158 (10%)
Query: 216 DEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF 275
DE K+ L VGGG +EFA + + ++ L GD IL F
Sbjct: 185 DEAPKRAL---CVGGGYISIEFAGIFNAY-----------KARGGQVDLAYRGDMILRGF 230
Query: 276 DKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTR 335
D + E+ + +GI+++T K++ T+ + Y +V+ + G R
Sbjct: 231 DSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPR 290
Query: 336 PVIMDFMKQ-IGQANRRVLATDEWLRVEGCESVYALGD 372
+ K + A + D + + +++YA+GD
Sbjct: 291 SQTLQLDKAGVEVAKNGAIKVDAYSKTN-VDNIYAIGD 327
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 16/158 (10%)
Query: 216 DEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF 275
DE K+ L VGGG +EFA + + ++ L GD IL F
Sbjct: 185 DEAPKRAL---CVGGGYISIEFAGIFNAY-----------KARGGQVDLAYRGDMILRGF 230
Query: 276 DKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTR 335
D + E+ + +GI+++T K++ T+ + Y +V+ + G R
Sbjct: 231 DSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPR 290
Query: 336 PVIMDFMKQ-IGQANRRVLATDEWLRVEGCESVYALGD 372
+ K + A + D + + +++YA+GD
Sbjct: 291 SQTLQLDKAGVEVAKNGAIKVDAYSKTN-VDNIYAIGD 327
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 42/227 (18%)
Query: 157 EEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSD 216
E+F YD L+++ GA AN+ + L+ +E ID F +A+
Sbjct: 99 EQFEESYDKLILSPGASANSLGFESDITFT--LRNLEDT-----DAIDQFIKAN------ 145
Query: 217 EERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFD 276
+ K+L VVG G +E L++ L+P TL+ D I + D
Sbjct: 146 -QVDKVL---VVGAGYVSLEVLENLYE------RGLHP--------TLIHRSDKINKLMD 187
Query: 277 KRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRP 336
+ ++ + I + + ++ EI+ K +G++ Y M++ G+GT P
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHP 240
Query: 337 VIMDFMKQIGQANRR--VLATDEWLRVEGCESVYALGDCATINQRKV 381
+ +R+ + D++ ++YA+GD AT + R V
Sbjct: 241 NSKFIESSNIKLDRKGFIPVNDKF--ETNVPNIYAIGDIATSHYRHV 285
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 42/227 (18%)
Query: 157 EEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSD 216
E+F YD L+++ GA AN+ + L+ +E ID F +A+
Sbjct: 99 EQFEESYDKLILSPGASANSLGFESDITFT--LRNLEDT-----DAIDQFIKAN------ 145
Query: 217 EERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFD 276
++ +VVG G +E L++ L+P TL+ D I + D
Sbjct: 146 ----QVDKVLVVGAGYVSLEVLENLYE------RGLHP--------TLIHRSDKINKLMD 187
Query: 277 KRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRP 336
+ ++ + I + + ++ EI+ K +G++ Y M++ G+GT P
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHP 240
Query: 337 VIMDFMKQIGQANRR--VLATDEWLRVEGCESVYALGDCATINQRKV 381
+ +R+ + D++ ++YA+GD AT + R V
Sbjct: 241 NSKFIESSNIKLDRKGFIPVNDKF--ETNVPNIYAIGDIATSHYRHV 285
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 42/227 (18%)
Query: 157 EEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSD 216
E+F YD L+++ GA AN+ + L+ +E ID F +A+
Sbjct: 99 EQFEESYDKLILSPGASANSLGFESDITFT--LRNLEDT-----DAIDQFIKAN------ 145
Query: 217 EERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFD 276
++ +VVG G +E L++ L+P TL+ D I + D
Sbjct: 146 ----QVDKVLVVGAGYVSLEVLENLYE------RGLHP--------TLIHRSDKINKLMD 187
Query: 277 KRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRP 336
+ ++ + I + + ++ EI+ K +G++ Y M++ G+GT P
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHP 240
Query: 337 VIMDFMKQIGQANRR--VLATDEWLRVEGCESVYALGDCATINQRKV 381
+ +R+ + D++ ++YA+GD AT + R V
Sbjct: 241 NSKFIESSNIKLDRKGFIPVNDKF--ETNVPNIYAIGDIATSHYRHV 285
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 42/227 (18%)
Query: 157 EEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSD 216
E+F YD L+++ GA AN+ + L+ +E ID F +A+
Sbjct: 99 EQFEESYDKLILSPGASANSLGFESDITFT--LRNLEDT-----DAIDQFIKAN------ 145
Query: 217 EERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFD 276
+ K+L VVG G +E L++ L+P TL+ D I + D
Sbjct: 146 -QVDKVL---VVGAGYVSLEVLENLYE------RGLHP--------TLIHRSDKINKLMD 187
Query: 277 KRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRP 336
+ ++ + I + + ++ EI+ K +G++ Y M++ G+GT P
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHP 240
Query: 337 VIMDFMKQIGQANRR--VLATDEWLRVEGCESVYALGDCATINQRKV 381
+ +R+ + D++ ++YA+GD AT + R V
Sbjct: 241 NSKFIESSNIKLDRKGFIPVNDKF--ETNVPNIYAIGDIATSHYRHV 285
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 42/227 (18%)
Query: 157 EEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSD 216
E+F YD L+++ GA AN+ + L+ +E ID F +A+
Sbjct: 100 EQFEESYDKLILSPGASANSLGFESDITFT--LRNLEDT-----DAIDQFIKAN------ 146
Query: 217 EERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFD 276
++ +VVG G +E L++ L+P TL+ D I + D
Sbjct: 147 ----QVDKVLVVGAGYVSLEVLENLYE------RGLHP--------TLIHRSDKINKLMD 188
Query: 277 KRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRP 336
+ ++ + I + + ++ EI+ K +G++ Y M++ G+GT P
Sbjct: 189 ADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHP 241
Query: 337 VIMDFMKQIGQANRR--VLATDEWLRVEGCESVYALGDCATINQRKV 381
+ +R+ + D++ ++YA+GD AT + R V
Sbjct: 242 NSKFIESSNIKLDRKGFIPVNDKF--ETNVPNIYAIGDIATSHYRHV 286
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 42/227 (18%)
Query: 157 EEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSD 216
E+F YD L+++ GA AN+ + L+ +E ID F +A+
Sbjct: 99 EQFEESYDKLILSPGASANSLGFESDITFT--LRNLEDT-----DAIDQFIKAN------ 145
Query: 217 EERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFD 276
++ +VVG G +E L++ L+P TL+ D I + D
Sbjct: 146 ----QVDKVLVVGAGYVSLEVLENLYE------RGLHP--------TLIHRSDKINKLMD 187
Query: 277 KRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRP 336
+ ++ + I + + ++ EI+ K +G++ Y M++ G+GT P
Sbjct: 188 ADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTHP 240
Query: 337 VIMDFMKQIGQANRR--VLATDEWLRVEGCESVYALGDCATINQRKV 381
+ +R+ + D++ ++YA+GD AT + R V
Sbjct: 241 NSKFIESSNIKLDRKGFIPVNDKF--ETNVPNIYAIGDIATSHYRHV 285
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 42/228 (18%)
Query: 156 KEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLS 215
E+F YD L+++ GA AN+ + L+ +E ID F +A+
Sbjct: 98 NEQFEESYDKLILSPGASANSLGFESDITFT--LRNLEDT-----DAIDQFIKAN----- 145
Query: 216 DEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF 275
+ K+L VVG G +E L++ L+P TL+ D I +
Sbjct: 146 --QVDKVL---VVGAGYVSLEVLENLYE------RGLHP--------TLIHRSDKINKLM 186
Query: 276 DKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTR 335
D + ++ + I + + ++ EI+ K +G++ Y M++ G+GT
Sbjct: 187 DADMNQPILDELDKREIPYRLNEEINAINGNEITFK---SGKVEH--YDMII--EGVGTH 239
Query: 336 PVIMDFMKQIGQANRR--VLATDEWLRVEGCESVYALGDCATINQRKV 381
P + +R+ + D++ ++YA+GD AT + R V
Sbjct: 240 PNSKFIESSNIKLDRKGFIPVNDKF--ETNVPNIYAIGDIATSHYRHV 285
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 121/314 (38%), Gaps = 59/314 (18%)
Query: 63 LGTGWAGTTFLKILKSNSFEVQVVS--PRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVR 120
+G G G K L S ++EV V+ P Y++ P+L G + + + R
Sbjct: 14 VGNGPGGFELAKQL-SQTYEVTVIDKEPVPYYS-KPMLSHYIAGFIPRNRLFPYSLDWYR 71
Query: 121 KKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTP 180
K+G++I+ E E ID +K + E + YD LV+A GA+A
Sbjct: 72 KRGIEIRLAE-EAKLIDRGRKVVITEKGE-----------VPYDTLVLATGARAREPQIK 119
Query: 181 GVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAA 240
G E+ L+ + A RI+ S+ + E + +E A
Sbjct: 120 GK-EYLLTLRTIFDADRIKESIENSGEAIIIGGGFIG-----------------LELAGN 161
Query: 241 LHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMV 300
L + + L+ G L + D+ ++ ++ + G+ S +
Sbjct: 162 LAE--------------AGYHVKLIHRGAMFLGL-DEELSNMIKDMLEETGVKFFLNSEL 206
Query: 301 VKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEWLR 360
++ +++ + T +G I V IG P + D ++ G R + D+ R
Sbjct: 207 LEANEEGVLTN---SGFIEG-----KVKICAIGIVPNV-DLARRSGIHTGRGILIDDNFR 257
Query: 361 VEGCESVYALGDCA 374
+ VYA+GDCA
Sbjct: 258 TS-AKDVYAIGDCA 270
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 216 DEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF 275
+E+ KK+ VVVG G G+E A H + L+ G+ +L F
Sbjct: 182 EEQPKKV---VVVGAGYIGIELAGVFHGL--------------GSETHLVIRGETVLRKF 224
Query: 276 DKRITASAEEKFKRDGIDLKTGSMVVKLSDKEIST 310
D+ I + + + ++GI++ S +VK+ +K + T
Sbjct: 225 DECIQNTITDHYVKEGINVHKLSKIVKV-EKNVET 258
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 225 FVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAE 284
V+VGGG GVEFA H + + TLL GD IL FD +
Sbjct: 194 IVIVGGGYIGVEFANIFHGLGV--------------KTTLLHRGDLILRNFDYDLRQLLN 239
Query: 285 EKFKRDGIDLKTGSMVVKLSDKE 307
+ GI + + V ++ E
Sbjct: 240 DAMVAKGISIIYEATVSQVQSTE 262
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 46/237 (19%)
Query: 140 KKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIR 199
K + R + D KE L+ + +++A G+ + N PG+ EH
Sbjct: 132 KNVVNVRESADPASAVKER--LETENILLASGSWPHMPNIPGI----------EHC---- 175
Query: 200 RSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEF 259
I E LP E +++L VGGG VEFA + + D
Sbjct: 176 ---ISSNEAFYLP----EPPRRVL---TVGGGFISVEFAGIFNAYKPKD----------- 214
Query: 260 TRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQIS 319
++TL G+ IL FD + ++ +GI + T K+ +K
Sbjct: 215 GQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGK 274
Query: 320 SIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRV----LATDEWLRVEGCESVYALGD 372
+ + +V+ + IG P D Q+ A + + DE+ R ++YA+GD
Sbjct: 275 KMDFDLVMMA--IGRSPRTKDL--QLQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGD 326
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 46/237 (19%)
Query: 140 KKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIR 199
K + R + D KE L+ + +++A G+ + N PG+ EH
Sbjct: 131 KNVVNVRESADPASAVKER--LETEHILLASGSWPHMPNIPGI----------EHC---- 174
Query: 200 RSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEF 259
I E LP E +++L VGGG VEFA + + D
Sbjct: 175 ---ISSNEAFYLP----EPPRRVL---TVGGGFISVEFAGIFNAYKPKD----------- 213
Query: 260 TRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQIS 319
++TL G+ IL FD + ++ +GI + T K+ +K
Sbjct: 214 GQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGK 273
Query: 320 SIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRV----LATDEWLRVEGCESVYALGD 372
+ + +V+ + IG P D Q+ A + + DE+ R ++YA+GD
Sbjct: 274 KMDFDLVMMA--IGRSPRTKDL--QLQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGD 325
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 46/237 (19%)
Query: 140 KKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIR 199
K + R + D KE L+ + +++A G+ + N PG+ EH
Sbjct: 132 KNVVNVRESADPASAVKER--LETEHILLASGSWPHMPNIPGI----------EHC---- 175
Query: 200 RSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEF 259
I E LP E +++L VGGG VEFA + + D
Sbjct: 176 ---ISSNEAFYLP----EPPRRVL---TVGGGFISVEFAGIFNAYKPKD----------- 214
Query: 260 TRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQIS 319
++TL G+ IL FD + ++ +GI + T K+ +K
Sbjct: 215 GQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGK 274
Query: 320 SIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRV----LATDEWLRVEGCESVYALGD 372
+ + +V+ + IG P D Q+ A + + DE+ R ++YA+GD
Sbjct: 275 KMDFDLVMMA--IGRSPRTKDL--QLQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGD 326
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 46/237 (19%)
Query: 140 KKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIR 199
K + R + D KE L+ + +++A G+ + N PG+ EH
Sbjct: 133 KNVVNVRESADPASAVKER--LETEHILLASGSWPHMPNIPGI----------EHC---- 176
Query: 200 RSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEF 259
I E LP E +++L VGGG VEFA + + D
Sbjct: 177 ---ISSNEAFYLP----EPPRRVL---TVGGGFISVEFAGIFNAYKPKD----------- 215
Query: 260 TRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQIS 319
++TL G+ IL FD + ++ +GI + T K+ +K
Sbjct: 216 GQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGK 275
Query: 320 SIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRV----LATDEWLRVEGCESVYALGD 372
+ + +V+ + IG P D Q+ A + + DE+ R ++YA+GD
Sbjct: 276 KMDFDLVMMA--IGRSPRTKDL--QLQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGD 327
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 374 ATINQRKVMED-ISAIFSKADKNNTGKLNVKDLKEVVKDI 412
+++QR+ ++ I + KADKN K+N K+LK+ +K++
Sbjct: 1 GSMDQRQKLQHWIHSCLRKADKNKDNKMNFKELKDFLKEL 40
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 373 CATINQRKVMEDISAIFSKADKNNTGKLNVKDLKEVVKDICERYPQVEI 421
A + +R E+I F D +N+G + +KDL+ V K++ E + E+
Sbjct: 91 TAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEEL 139
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 218 ERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-NMFD 276
E K I VVG G GVE A A ++ + L++ D L +D
Sbjct: 190 ENKDIKRVAVVGAGYIGVELAEAFQ--------------RKGKEVVLIDVVDTCLAGYYD 235
Query: 277 KRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISS---IPYGMVVWSTGIG 333
+ +T + + GI L G V KE++ + I+ MV+ + +G
Sbjct: 236 RDLTDLMAKNMEEHGIQLAFGETV-----KEVAGNGKVEKIITDKNEYDVDMVILA--VG 288
Query: 334 TRPVIMDFMKQIGQANRRVLATDEWLRVEGCES----VYALGDCATI 376
RP +G + +L + E+ VYA+GDCATI
Sbjct: 289 FRP-----NTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATI 330
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 218 ERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-NMFD 276
E K I VVG G GVE A A ++ + L++ D L +D
Sbjct: 190 ENKDIKRVAVVGAGYIGVELAEAFQ--------------RKGKEVVLIDVVDTCLAGYYD 235
Query: 277 KRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISS---IPYGMVVWSTGIG 333
+ +T + + GI L G V KE++ + I+ MV+ + +G
Sbjct: 236 RDLTDLMAKNMEEHGIQLAFGETV-----KEVAGNGKVEKIITDKNEYDVDMVILA--VG 288
Query: 334 TRPVIMDFMKQIGQANRRVLATDEWLRVEGCES----VYALGDCATI 376
RP +G + +L + E+ VYA+GDCATI
Sbjct: 289 FRP-----NTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATI 330
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 376 INQRKVMED-ISAIFSKADKNNTGKLNVKDLKEVVKDI 412
++QR+ ++ I + KADKN K+N K+LK+ +K++
Sbjct: 1 MDQRQKLQHWIHSCLRKADKNKDNKMNFKELKDFLKEL 38
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 48/234 (20%)
Query: 155 GKEEFALDYDILVIAMGAQANTFNTPGVVEHAHF-LKEVEHAQRIRRSVIDCFERASLPN 213
G+EE + Y LV+A GA+ G + A + + ++E R R++
Sbjct: 96 GEEE--VRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAG--------- 144
Query: 214 LSDEERKKILHFVVVGGGPTGVEFAAALHDF-----VIDDLSKLYPSLKEFTRITLLEAG 268
++++L ++G G G EFA L V+ ++ P L ++AG
Sbjct: 145 -----KRRVL---LLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAG 196
Query: 269 DHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVW 328
L + A K +G++ LSD E+ IP +VV
Sbjct: 197 LEGLGVRFHLGPVLASLKKAGEGLE-------AHLSDGEV------------IPCDLVVS 237
Query: 329 STGIGTRPVIMDFMKQIGQANRRVLATDEWLRVEGCESVYALGDCATINQRKVM 382
+ G+ R + G A R + D LR ++YALGDCA ++ ++
Sbjct: 238 AVGLRPR---TELAFAAGLAVNRGIVVDRSLRTSHA-NIYALGDCAEVDGLNLL 287
>pdb|4DL0|I Chain I, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase
pdb|4DL0|C Chain C, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase
pdb|4EFA|C Chain C, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase - Second
Conformation
Length = 130
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 22/108 (20%)
Query: 380 KVMEDISAIFSKADKNNTGKLNVKDLKEVVKDICERYPQVEIYLNKKQLKNINVLLKNAE 439
KV E S + A++ TG L+V+ L ++VK P+ + LN + L + V +
Sbjct: 3 KVPESGSMNLAAAERKKTGDLSVRSLHDIVK------PE-DFVLNSEHLTTVLVAV---- 51
Query: 440 EDPKKASMEFDIEKFKKALSEVDSQMKHLPATAQVAAQEGAYLANCFN 487
PK S++ D EK + LS+ +PA+A V A++ Y+ FN
Sbjct: 52 --PK--SLKSDFEKSYETLSK-----NVVPASASVIAEDAEYV--LFN 88
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 93 AFTPLLPSVTNGTV----EARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTT 148
A TPL+ VT + EAR +E +RNI+R G+ K D EK Q+ C
Sbjct: 147 AGTPLMEIVTEPDIRTPEEARLFLEKLRNIMRYAGVS---------KADMEKGQLRCDIN 197
Query: 149 EDRTCGGKEEFALDYDI 165
G +EF +I
Sbjct: 198 VSIRPKGSKEFGTRVEI 214
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 90/238 (37%), Gaps = 47/238 (19%)
Query: 140 KKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIR 199
K + R T D KE D+ +++A G+ PG+ EH
Sbjct: 132 KNVVVVRETADPKSAVKERLQADH--ILLATGSWPQMPAIPGI----------EHC---- 175
Query: 200 RSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEF 259
I E LP E +++L VGGG VEFA + +
Sbjct: 176 ---ISSNEAFYLP----EPPRRVL---TVGGGFISVEFAGIFNAY-----------KPPG 214
Query: 260 TRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQIS 319
++TL + IL FD+ I ++ +GI++ T K+S +K
Sbjct: 215 GKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGK 274
Query: 320 SIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRV-----LATDEWLRVEGCESVYALGD 372
++ +V+ + IG P D Q+G ++ + DE+ R ++YA+GD
Sbjct: 275 TLDVDVVMMA--IGRIPRTNDL--QLGNVGVKLTPKGGVQVDEFSRTN-VPNIYAIGD 327
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 90/238 (37%), Gaps = 47/238 (19%)
Query: 140 KKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIR 199
K + R T D KE D+ +++A G+ PG+ EH
Sbjct: 135 KNVVVVRETADPKSAVKERLQADH--ILLATGSWPQMPAIPGI----------EHC---- 178
Query: 200 RSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEF 259
I E LP E +++L VGGG VEFA + +
Sbjct: 179 ---ISSNEAFYLP----EPPRRVL---TVGGGFISVEFAGIFNAY-----------KPPG 217
Query: 260 TRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQIS 319
++TL + IL FD+ I ++ +GI++ T K+S +K
Sbjct: 218 GKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGK 277
Query: 320 SIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRV-----LATDEWLRVEGCESVYALGD 372
++ +V+ + IG P D Q+G ++ + DE+ R ++YA+GD
Sbjct: 278 TLDVDVVMMA--IGRIPRTNDL--QLGNVGVKLTPKGGVQVDEFSRTN-VPNIYAIGD 330
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 18/154 (11%)
Query: 227 VVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEK 286
++G G G+E A L F + +T++ D +L FD ++A+ E
Sbjct: 171 IIGAGYIGIELAGLLRSF--------------GSEVTVVALEDRLLFQFDPLLSATLAEN 216
Query: 287 FKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTG--IGTRPVIMDFMKQ 344
GI+ V L T A + V+W+ G TR + ++
Sbjct: 217 MHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGI 276
Query: 345 IGQANRRVLATDEWLRVEGCESVYALGDCATINQ 378
Q+N V TD + VYALGD +Q
Sbjct: 277 EVQSNGMV-PTDAYQNTN-VPGVYALGDITGRDQ 308
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 373 CATINQRKVMEDISAIFSKADKNNTGKLNVKDLKEVVKDICERYPQVEI 421
A + +R E+I F D + TGK++ K+LK V K++ E E+
Sbjct: 71 TAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEEL 119
>pdb|1OQP|A Chain A, Structure Of The Ca2+C-Terminal Domain Of Caltractin In
Complex With The Cdc31p-Binding Domain From Kar1p
Length = 77
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 378 QRKVMEDISAIFSKADKNNTGKLNVKDLKEVVKDICERYPQVEI 421
+R E+I F D +N+G + +KDL+ V K++ E + E+
Sbjct: 4 ERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEEL 47
>pdb|1M46|A Chain A, Crystal Structure Of Mlc1p Bound To Iq4 Of Myo2p, A Class
V Myosin
pdb|1M45|A Chain A, Crystal Structure Of Mlc1p Bound To Iq2 Of Myo2p, A Class
V Myosin
pdb|1N2D|A Chain A, Ternary Complex Of Mlc1p Bound To Iq2 And Iq3 Of Myo2p, A
Class V Myosin
pdb|1N2D|B Chain B, Ternary Complex Of Mlc1p Bound To Iq2 And Iq3 Of Myo2p, A
Class V Myosin
Length = 148
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 25/127 (19%)
Query: 340 DFMKQIG-----QANRRVLATDEWLRVEGCESVYALGDCATINQRKV-------MEDISA 387
D+++ IG Q + ++ D LR ++ + +N++++ ED
Sbjct: 28 DYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVK 87
Query: 388 IFSKADKNNTGKLNVKDLKEVVKDICERYPQVEIYLNKKQLKNINVLLKNAEEDPKKASM 447
F DK +TGK++V DL+ ++ + E+ E ++ LLK E D ++
Sbjct: 88 AFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAE----------VDELLKGVEVD---SNG 134
Query: 448 EFDIEKF 454
E D +KF
Sbjct: 135 EIDYKKF 141
>pdb|1U7L|A Chain A, Crystal Structure Of Subunit C (Vma5p) Of The Yeast
V-Atpase
Length = 392
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 20/94 (21%)
Query: 389 FSKADKNNTGKLNVKDLKEVVKDICERYPQVEIYLNKKQLKNINVLLKNAEEDPKKASME 448
+ A++ TG L+V+ L ++VK P+ + LN + L + V + PK S++
Sbjct: 159 LAAAERKKTGDLSVRSLHDIVK------PE-DFVLNSEHLTTVLVAV------PK--SLK 203
Query: 449 FDIEKFKKALSEVDSQMKHLPATAQVAAQEGAYL 482
D EK + LS+ +PA+A V A++ Y+
Sbjct: 204 SDFEKSYETLSK-----NVVPASASVIAEDAEYV 232
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 426 KQLKNINVLLKNAEEDPKKASMEFDIEKFKKALSEVDSQMKHLPATAQVAAQEGAYLANC 485
KQ+K +N L+++AEE + ++ A S+ +S MK P+ A+ + + +C
Sbjct: 252 KQVKKLNKLIESAEELIRDG-------RYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304
Query: 486 FNRMEQ 491
F++ E+
Sbjct: 305 FSKDEK 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,104,549
Number of Sequences: 62578
Number of extensions: 716695
Number of successful extensions: 2325
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 2212
Number of HSP's gapped (non-prelim): 139
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)