Query 045826
Match_columns 584
No_of_seqs 410 out of 4134
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:52:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2495 NADH-dehydrogenase (ub 100.0 3.3E-85 7.1E-90 650.3 34.7 485 5-584 5-491 (491)
2 COG1252 Ndh NADH dehydrogenase 100.0 2.7E-74 5.9E-79 591.2 41.2 401 56-581 2-404 (405)
3 PTZ00318 NADH dehydrogenase-li 100.0 1E-64 2.2E-69 541.5 45.7 416 54-584 7-424 (424)
4 TIGR03169 Nterm_to_SelD pyridi 100.0 3.9E-47 8.4E-52 399.3 37.9 355 59-558 1-361 (364)
5 PRK13512 coenzyme A disulfide 100.0 5.2E-39 1.1E-43 344.8 31.9 274 57-376 1-281 (438)
6 PRK09754 phenylpropionate diox 100.0 5.5E-38 1.2E-42 333.0 32.4 271 56-377 2-280 (396)
7 PRK09564 coenzyme A disulfide 100.0 1.5E-37 3.3E-42 335.1 30.5 278 58-377 1-287 (444)
8 PRK04965 NADH:flavorubredoxin 100.0 6E-37 1.3E-41 323.2 30.7 269 57-376 2-277 (377)
9 PRK14989 nitrite reductase sub 100.0 2.1E-36 4.5E-41 343.7 30.8 270 57-376 3-285 (847)
10 TIGR02374 nitri_red_nirB nitri 100.0 1.1E-35 2.3E-40 338.5 32.4 268 60-376 1-276 (785)
11 COG1249 Lpd Pyruvate/2-oxoglut 100.0 8.5E-36 1.8E-40 314.5 26.4 268 56-375 3-313 (454)
12 PRK06416 dihydrolipoamide dehy 100.0 8E-35 1.7E-39 315.3 28.8 269 56-375 3-312 (462)
13 TIGR01424 gluta_reduc_2 glutat 100.0 9E-35 2E-39 312.9 28.2 261 57-375 2-304 (446)
14 PLN02507 glutathione reductase 100.0 2.8E-34 6E-39 311.9 29.6 267 55-375 23-341 (499)
15 PRK06467 dihydrolipoamide dehy 100.0 5.5E-34 1.2E-38 308.4 29.5 269 56-375 3-315 (471)
16 PRK05976 dihydrolipoamide dehy 100.0 4.1E-34 8.9E-39 310.1 28.5 272 56-375 3-321 (472)
17 PRK05249 soluble pyridine nucl 100.0 9.3E-34 2E-38 307.0 29.3 268 56-375 4-313 (461)
18 PRK06370 mercuric reductase; V 100.0 1.5E-33 3.2E-38 305.2 30.6 263 56-375 4-312 (463)
19 TIGR01421 gluta_reduc_1 glutat 100.0 7.4E-34 1.6E-38 305.6 27.2 260 57-375 2-306 (450)
20 PRK06116 glutathione reductase 100.0 9.1E-34 2E-38 305.9 27.4 259 57-375 4-306 (450)
21 PRK06115 dihydrolipoamide dehy 100.0 1.5E-33 3.4E-38 304.6 28.9 268 57-375 3-316 (466)
22 TIGR02053 MerA mercuric reduct 100.0 1.2E-33 2.6E-38 306.0 28.0 265 58-375 1-307 (463)
23 PRK08010 pyridine nucleotide-d 100.0 1.5E-33 3.3E-38 303.3 28.2 267 56-375 2-295 (441)
24 TIGR01423 trypano_reduc trypan 100.0 3.5E-33 7.6E-38 301.5 29.8 274 56-375 2-329 (486)
25 PLN02546 glutathione reductase 100.0 2.2E-33 4.8E-38 306.3 28.5 260 57-375 79-391 (558)
26 PRK14694 putative mercuric red 100.0 5.6E-33 1.2E-37 300.8 30.7 267 55-375 4-313 (468)
27 PTZ00058 glutathione reductase 100.0 3.9E-33 8.4E-38 304.2 29.5 272 55-377 46-378 (561)
28 PRK07251 pyridine nucleotide-d 100.0 6.6E-33 1.4E-37 298.2 30.5 266 57-375 3-294 (438)
29 PRK07818 dihydrolipoamide dehy 100.0 5.1E-33 1.1E-37 301.1 29.5 266 57-375 4-314 (466)
30 TIGR01292 TRX_reduct thioredox 100.0 7.5E-33 1.6E-37 282.7 29.1 264 58-375 1-276 (300)
31 PRK07845 flavoprotein disulfid 100.0 4.8E-33 1.1E-37 300.8 28.2 267 57-375 1-315 (466)
32 PRK14727 putative mercuric red 100.0 2.1E-32 4.4E-37 296.9 30.4 268 55-375 14-324 (479)
33 PRK07846 mycothione reductase; 100.0 3E-32 6.6E-37 293.0 31.3 258 58-375 2-303 (451)
34 TIGR01350 lipoamide_DH dihydro 100.0 1.8E-32 3.8E-37 297.1 29.2 266 58-375 2-310 (461)
35 PRK06912 acoL dihydrolipoamide 100.0 1.2E-32 2.7E-37 297.3 27.5 263 59-375 2-308 (458)
36 TIGR01438 TGR thioredoxin and 100.0 1.4E-32 2.9E-37 297.6 27.4 267 57-375 2-321 (484)
37 PRK13748 putative mercuric red 100.0 1.7E-32 3.6E-37 304.3 28.1 266 56-375 97-406 (561)
38 PRK06292 dihydrolipoamide dehy 100.0 3.1E-32 6.7E-37 295.0 27.9 263 56-375 2-309 (460)
39 TIGR03385 CoA_CoA_reduc CoA-di 100.0 4.9E-32 1.1E-36 290.7 27.9 263 71-377 1-274 (427)
40 PRK10262 thioredoxin reductase 100.0 3.6E-31 7.9E-36 273.2 28.5 268 56-375 5-290 (321)
41 PRK06327 dihydrolipoamide dehy 100.0 4.6E-31 1E-35 286.2 29.0 269 57-375 4-325 (475)
42 PTZ00052 thioredoxin reductase 100.0 1.4E-30 3E-35 283.2 30.8 263 57-375 5-318 (499)
43 PTZ00153 lipoamide dehydrogena 100.0 1E-30 2.2E-35 288.6 29.7 270 57-375 116-473 (659)
44 TIGR03143 AhpF_homolog putativ 100.0 9.9E-31 2.1E-35 287.9 26.0 265 57-375 4-284 (555)
45 TIGR03452 mycothione_red mycot 100.0 5.5E-30 1.2E-34 275.8 30.2 261 57-375 2-306 (452)
46 TIGR03140 AhpF alkyl hydropero 100.0 1.6E-30 3.4E-35 284.3 26.0 268 55-376 210-489 (515)
47 PRK12831 putative oxidoreducta 100.0 1.6E-30 3.5E-35 280.0 24.2 273 54-375 137-437 (464)
48 TIGR01316 gltA glutamate synth 100.0 1.4E-30 2.9E-35 280.0 22.8 271 54-375 130-426 (449)
49 TIGR03315 Se_ygfK putative sel 100.0 1.1E-29 2.4E-34 288.2 29.7 321 55-528 535-874 (1012)
50 PRK15317 alkyl hydroperoxide r 100.0 1.7E-29 3.8E-34 276.4 29.9 267 55-376 209-488 (517)
51 KOG1336 Monodehydroascorbate/f 100.0 8.3E-30 1.8E-34 259.8 24.6 273 56-378 73-354 (478)
52 PRK11749 dihydropyrimidine deh 100.0 6.1E-30 1.3E-34 276.3 24.9 267 54-375 137-428 (457)
53 PRK09853 putative selenate red 100.0 3.2E-29 7E-34 282.9 29.8 263 55-375 537-818 (1019)
54 KOG1335 Dihydrolipoamide dehyd 100.0 3.4E-30 7.3E-35 253.3 16.7 270 56-376 38-356 (506)
55 KOG0405 Pyridine nucleotide-di 100.0 3E-29 6.4E-34 243.7 19.9 268 55-375 18-328 (478)
56 PRK12770 putative glutamate sy 100.0 1.1E-28 2.4E-33 257.7 24.8 280 56-375 17-326 (352)
57 COG0492 TrxB Thioredoxin reduc 100.0 2.6E-28 5.7E-33 246.0 25.9 278 56-393 2-294 (305)
58 PRK12778 putative bifunctional 100.0 1.3E-28 2.9E-33 280.5 24.7 272 55-375 429-726 (752)
59 COG1251 NirB NAD(P)H-nitrite r 100.0 1.6E-28 3.4E-33 261.0 22.7 273 56-376 2-281 (793)
60 PRK12779 putative bifunctional 100.0 4.8E-28 1E-32 277.9 25.5 275 55-376 304-604 (944)
61 PRK12810 gltD glutamate syntha 100.0 8.9E-28 1.9E-32 260.0 24.7 275 55-375 141-441 (471)
62 PRK12814 putative NADPH-depend 100.0 4.9E-28 1.1E-32 270.8 22.4 263 55-375 191-477 (652)
63 KOG4716 Thioredoxin reductase 100.0 2E-28 4.4E-33 236.8 10.8 273 54-375 16-342 (503)
64 PRK12775 putative trifunctiona 99.9 9.1E-27 2E-31 269.7 22.4 272 56-375 429-731 (1006)
65 TIGR01318 gltD_gamma_fam gluta 99.9 3.1E-26 6.8E-31 247.1 24.8 274 56-375 140-442 (467)
66 PRK12769 putative oxidoreducta 99.9 2.7E-26 5.9E-31 257.7 23.5 273 55-375 325-628 (654)
67 PRK13984 putative oxidoreducta 99.9 1.4E-25 3.1E-30 250.4 26.0 274 55-375 281-579 (604)
68 TIGR01317 GOGAT_sm_gam glutama 99.9 2E-25 4.3E-30 241.8 24.0 277 56-375 142-455 (485)
69 PRK12809 putative oxidoreducta 99.9 2.4E-25 5.2E-30 249.1 23.6 274 55-375 308-611 (639)
70 PLN02852 ferredoxin-NADP+ redu 99.9 1.7E-24 3.7E-29 231.3 22.9 310 55-393 24-415 (491)
71 COG0446 HcaD Uncharacterized N 99.9 8E-24 1.7E-28 225.8 26.6 268 60-377 1-280 (415)
72 KOG3851 Sulfide:quinone oxidor 99.9 8.4E-25 1.8E-29 210.5 16.4 287 55-377 37-337 (446)
73 PRK12771 putative glutamate sy 99.9 6E-24 1.3E-28 235.2 24.7 262 55-375 135-420 (564)
74 COG3634 AhpF Alkyl hydroperoxi 99.9 3E-24 6.4E-29 208.8 17.0 282 53-392 207-507 (520)
75 KOG0404 Thioredoxin reductase 99.9 9.6E-24 2.1E-28 193.7 17.2 287 57-392 8-311 (322)
76 TIGR01372 soxA sarcosine oxida 99.9 2.9E-22 6.3E-27 233.7 29.8 287 56-392 162-464 (985)
77 PLN02172 flavin-containing mon 99.9 7.1E-22 1.5E-26 211.9 23.0 255 55-373 8-328 (461)
78 KOG1346 Programmed cell death 99.8 3.1E-19 6.7E-24 177.5 17.9 276 58-378 179-491 (659)
79 COG0493 GltD NADPH-dependent g 99.8 2.1E-19 4.5E-24 190.4 17.4 281 54-375 120-427 (457)
80 PRK06567 putative bifunctional 99.8 7.8E-19 1.7E-23 196.4 20.9 255 53-338 379-730 (1028)
81 PF00743 FMO-like: Flavin-bind 99.8 5.3E-19 1.1E-23 192.2 16.9 164 57-245 1-206 (531)
82 PF07992 Pyr_redox_2: Pyridine 99.8 8.1E-20 1.7E-24 175.3 1.6 140 59-201 1-148 (201)
83 KOG0399 Glutamate synthase [Am 99.8 3.2E-18 6.9E-23 186.3 13.8 290 48-375 1776-2096(2142)
84 KOG2755 Oxidoreductase [Genera 99.7 3.8E-18 8.1E-23 160.8 7.1 263 59-376 1-322 (334)
85 PF13434 K_oxygenase: L-lysine 99.6 5.8E-15 1.2E-19 152.5 15.7 238 57-333 2-340 (341)
86 PF13738 Pyr_redox_3: Pyridine 99.6 4.2E-16 9E-21 149.8 6.7 165 61-270 1-201 (203)
87 COG2072 TrkA Predicted flavopr 99.6 3.3E-14 7.1E-19 152.2 17.1 177 54-271 5-210 (443)
88 KOG1399 Flavin-containing mono 99.6 1.6E-14 3.6E-19 152.5 13.8 225 55-334 4-269 (448)
89 PTZ00188 adrenodoxin reductase 99.6 4.3E-14 9.3E-19 149.1 16.8 299 56-385 38-425 (506)
90 KOG1800 Ferredoxin/adrenodoxin 99.6 1.4E-14 3E-19 143.8 12.0 305 56-394 19-401 (468)
91 COG1148 HdrA Heterodisulfide r 99.5 1.3E-12 2.8E-17 133.5 23.5 308 54-375 121-522 (622)
92 COG3486 IucD Lysine/ornithine 99.5 7.4E-13 1.6E-17 133.6 20.0 282 55-375 3-387 (436)
93 PRK05329 anaerobic glycerol-3- 99.4 4E-12 8.6E-17 134.5 15.3 140 226-377 219-393 (422)
94 PF00070 Pyr_redox: Pyridine n 99.2 4.5E-11 9.8E-16 96.6 10.0 68 224-305 1-68 (80)
95 COG2081 Predicted flavoprotein 99.0 1.2E-08 2.6E-13 103.8 16.5 76 269-347 101-186 (408)
96 COG4529 Uncharacterized protei 98.9 7.5E-08 1.6E-12 100.4 19.9 175 57-269 1-231 (474)
97 PF01266 DAO: FAD dependent ox 98.8 4.2E-07 9.2E-12 94.6 20.7 88 249-346 121-211 (358)
98 COG0579 Predicted dehydrogenas 98.8 1.5E-07 3.2E-12 98.8 15.6 90 246-338 124-215 (429)
99 PF03486 HI0933_like: HI0933-l 98.7 6.1E-08 1.3E-12 102.5 12.1 80 265-347 95-185 (409)
100 PRK09897 hypothetical protein; 98.7 1.4E-07 2.9E-12 103.0 15.1 183 57-270 1-246 (534)
101 PLN02463 lycopene beta cyclase 98.7 9.7E-08 2.1E-12 102.4 12.4 111 55-175 26-170 (447)
102 PRK12409 D-amino acid dehydrog 98.7 1.5E-06 3.2E-11 93.0 20.2 36 57-92 1-36 (410)
103 PRK12842 putative succinate de 98.6 2.3E-07 4.9E-12 103.4 11.8 94 223-332 158-273 (574)
104 PRK07843 3-ketosteroid-delta-1 98.6 1.4E-07 3E-12 104.6 9.1 93 223-331 161-266 (557)
105 TIGR02032 GG-red-SF geranylger 98.6 3.4E-07 7.3E-12 92.9 10.7 109 58-174 1-148 (295)
106 PRK13977 myosin-cross-reactive 98.6 2.2E-06 4.8E-11 92.9 17.2 42 55-96 20-65 (576)
107 TIGR03364 HpnW_proposed FAD de 98.5 3.9E-06 8.4E-11 88.2 18.6 71 277-353 145-217 (365)
108 PRK00711 D-amino acid dehydrog 98.5 2.7E-06 5.9E-11 91.1 16.8 56 277-335 201-258 (416)
109 TIGR03378 glycerol3P_GlpB glyc 98.5 4.4E-06 9.5E-11 87.8 17.2 102 275-376 261-394 (419)
110 PF01494 FAD_binding_3: FAD bi 98.5 2.3E-06 5E-11 89.0 14.8 62 277-340 111-176 (356)
111 PRK10157 putative oxidoreducta 98.5 5.5E-06 1.2E-10 89.0 17.5 40 56-95 4-43 (428)
112 PRK10015 oxidoreductase; Provi 98.5 3.6E-06 7.7E-11 90.4 15.7 40 56-95 4-43 (429)
113 TIGR01790 carotene-cycl lycope 98.4 1E-06 2.3E-11 93.4 11.0 106 59-174 1-141 (388)
114 PRK06847 hypothetical protein; 98.4 1.5E-06 3.3E-11 91.7 11.9 36 56-91 3-38 (375)
115 PRK04176 ribulose-1,5-biphosph 98.4 8.6E-07 1.9E-11 88.2 9.4 116 56-173 24-172 (257)
116 PLN02697 lycopene epsilon cycl 98.4 1.3E-06 2.8E-11 95.4 11.3 107 56-174 107-248 (529)
117 COG1233 Phytoene dehydrogenase 98.4 1.1E-06 2.4E-11 95.9 10.2 46 56-101 2-47 (487)
118 PF00070 Pyr_redox: Pyridine n 98.4 1.2E-06 2.6E-11 70.6 7.7 72 59-142 1-72 (80)
119 COG0644 FixC Dehydrogenases (f 98.4 1.7E-06 3.7E-11 92.0 11.1 111 56-174 2-152 (396)
120 PRK11728 hydroxyglutarate oxid 98.4 1.4E-06 3E-11 92.7 10.2 56 276-335 148-205 (393)
121 PRK07251 pyridine nucleotide-d 98.4 2.4E-06 5.3E-11 92.2 12.0 100 57-177 157-256 (438)
122 PTZ00383 malate:quinone oxidor 98.4 1.4E-06 3.1E-11 94.5 9.7 63 277-347 211-282 (497)
123 TIGR02023 BchP-ChlP geranylger 98.4 2.5E-06 5.5E-11 90.5 11.4 32 58-89 1-32 (388)
124 PF01134 GIDA: Glucose inhibit 98.4 1.1E-06 2.4E-11 91.3 8.3 105 59-172 1-150 (392)
125 COG0029 NadB Aspartate oxidase 98.4 1.4E-05 3.1E-10 83.6 16.4 33 59-92 9-41 (518)
126 TIGR03329 Phn_aa_oxid putative 98.3 8.7E-06 1.9E-10 88.4 15.5 56 276-335 182-238 (460)
127 TIGR01320 mal_quin_oxido malat 98.3 9.7E-06 2.1E-10 88.2 15.8 68 276-347 177-249 (483)
128 COG1249 Lpd Pyruvate/2-oxoglut 98.3 3.2E-06 7E-11 90.3 11.7 104 55-178 171-276 (454)
129 PRK06912 acoL dihydrolipoamide 98.3 3.6E-06 7.9E-11 91.3 12.3 103 57-178 170-272 (458)
130 TIGR01292 TRX_reduct thioredox 98.3 3E-06 6.6E-11 86.2 10.8 93 224-334 2-112 (300)
131 PRK06134 putative FAD-binding 98.3 1.1E-06 2.3E-11 98.0 7.9 42 55-96 10-51 (581)
132 PRK05192 tRNA uridine 5-carbox 98.3 2.8E-06 6.1E-11 93.0 10.8 35 56-90 3-37 (618)
133 TIGR00292 thiazole biosynthesi 98.3 4.6E-06 9.9E-11 82.8 11.2 117 56-173 20-169 (254)
134 PRK11101 glpA sn-glycerol-3-ph 98.3 3.3E-05 7.1E-10 85.6 19.2 84 248-334 123-211 (546)
135 TIGR03385 CoA_CoA_reduc CoA-di 98.3 3.6E-06 7.8E-11 90.6 11.4 100 57-177 137-236 (427)
136 PRK05976 dihydrolipoamide dehy 98.3 5E-06 1.1E-10 90.6 12.3 104 57-178 180-285 (472)
137 PRK06126 hypothetical protein; 98.3 1.2E-05 2.6E-10 89.4 15.6 38 56-93 6-43 (545)
138 PF05834 Lycopene_cycl: Lycope 98.3 3.9E-06 8.4E-11 88.6 11.1 105 59-175 1-143 (374)
139 PRK11259 solA N-methyltryptoph 98.3 4.1E-05 8.8E-10 80.8 18.9 81 249-335 122-205 (376)
140 PRK06416 dihydrolipoamide dehy 98.3 4.6E-06 9.9E-11 90.7 11.9 105 57-178 172-276 (462)
141 PRK13339 malate:quinone oxidor 98.3 3.9E-05 8.4E-10 83.2 18.8 39 56-94 5-45 (497)
142 TIGR01377 soxA_mon sarcosine o 98.3 5.7E-06 1.2E-10 87.4 12.2 81 249-335 118-201 (380)
143 PLN00093 geranylgeranyl diphos 98.3 6.1E-06 1.3E-10 89.0 12.4 38 53-90 35-72 (450)
144 TIGR01350 lipoamide_DH dihydro 98.3 4.5E-06 9.8E-11 90.7 11.3 103 57-177 170-272 (461)
145 TIGR02734 crtI_fam phytoene de 98.3 3.2E-05 7E-10 85.0 18.1 39 60-98 1-39 (502)
146 COG1635 THI4 Ribulose 1,5-bisp 98.3 1.2E-06 2.6E-11 81.9 5.6 65 57-124 30-94 (262)
147 PRK07233 hypothetical protein; 98.3 1.2E-05 2.6E-10 86.5 14.1 38 59-96 1-38 (434)
148 PRK04965 NADH:flavorubredoxin 98.3 6.8E-06 1.5E-10 86.9 11.9 101 57-176 141-241 (377)
149 PRK05257 malate:quinone oxidor 98.3 0.00011 2.4E-09 80.1 21.6 60 277-336 183-248 (494)
150 PRK07608 ubiquinone biosynthes 98.2 5.9E-06 1.3E-10 87.6 11.4 36 57-92 5-40 (388)
151 PRK06834 hypothetical protein; 98.2 4.4E-06 9.5E-11 91.2 10.4 112 56-176 2-158 (488)
152 PRK07236 hypothetical protein; 98.2 8.4E-06 1.8E-10 86.5 12.2 37 55-91 4-40 (386)
153 PRK06184 hypothetical protein; 98.2 6.5E-06 1.4E-10 90.5 11.6 36 56-91 2-37 (502)
154 PRK08773 2-octaprenyl-3-methyl 98.2 7.8E-06 1.7E-10 86.9 11.8 37 55-91 4-40 (392)
155 PF13454 NAD_binding_9: FAD-NA 98.2 7.6E-06 1.6E-10 75.1 10.0 104 61-172 1-155 (156)
156 PRK06183 mhpA 3-(3-hydroxyphen 98.2 2.1E-05 4.5E-10 87.2 15.3 39 55-93 8-46 (538)
157 TIGR01373 soxB sarcosine oxida 98.2 0.00013 2.9E-09 77.9 21.0 55 277-334 183-240 (407)
158 PRK09564 coenzyme A disulfide 98.2 7.3E-06 1.6E-10 88.6 11.3 99 224-334 2-115 (444)
159 PF00890 FAD_binding_2: FAD bi 98.2 3.4E-05 7.4E-10 82.7 16.4 57 276-332 140-201 (417)
160 PRK08243 4-hydroxybenzoate 3-m 98.2 2.8E-05 6E-10 82.7 15.3 35 57-91 2-36 (392)
161 PRK07364 2-octaprenyl-6-methox 98.2 9.4E-06 2E-10 86.9 11.7 36 57-92 18-53 (415)
162 PRK06327 dihydrolipoamide dehy 98.2 1.2E-05 2.5E-10 87.8 12.5 104 57-178 183-288 (475)
163 PRK07333 2-octaprenyl-6-methox 98.2 8.1E-06 1.8E-10 87.0 10.7 35 57-91 1-37 (403)
164 TIGR02053 MerA mercuric reduct 98.2 1.1E-05 2.4E-10 87.7 11.8 105 57-178 166-270 (463)
165 PRK06370 mercuric reductase; V 98.2 1.1E-05 2.3E-10 87.8 11.7 102 57-177 171-274 (463)
166 COG0654 UbiH 2-polyprenyl-6-me 98.2 2.4E-05 5.2E-10 83.0 14.0 61 277-341 104-167 (387)
167 PRK08013 oxidoreductase; Provi 98.2 3.1E-05 6.7E-10 82.6 14.8 35 57-91 3-37 (400)
168 TIGR00275 flavoprotein, HI0933 98.2 2.8E-05 6E-10 82.8 14.4 56 275-334 103-160 (400)
169 PRK09754 phenylpropionate diox 98.2 1.1E-05 2.4E-10 85.8 11.3 98 57-175 144-242 (396)
170 PRK07588 hypothetical protein; 98.1 2.7E-05 5.8E-10 82.7 13.4 34 58-91 1-34 (391)
171 PRK14694 putative mercuric red 98.1 1.8E-05 3.8E-10 86.2 12.1 100 57-178 178-277 (468)
172 PRK05249 soluble pyridine nucl 98.1 1.6E-05 3.5E-10 86.4 11.7 101 57-177 175-275 (461)
173 PRK13512 coenzyme A disulfide 98.1 1.2E-05 2.6E-10 86.7 10.5 97 57-177 148-244 (438)
174 TIGR01424 gluta_reduc_2 glutat 98.1 1.6E-05 3.5E-10 85.9 11.6 101 57-177 166-266 (446)
175 PRK05714 2-octaprenyl-3-methyl 98.1 1.3E-05 2.9E-10 85.5 10.8 34 57-90 2-35 (405)
176 PRK07494 2-octaprenyl-6-methox 98.1 1.6E-05 3.4E-10 84.4 11.2 36 56-91 6-41 (388)
177 PRK08010 pyridine nucleotide-d 98.1 1.8E-05 3.9E-10 85.5 11.7 101 56-177 157-257 (441)
178 PRK08163 salicylate hydroxylas 98.1 1.3E-05 2.8E-10 85.3 10.3 36 57-92 4-39 (396)
179 PRK08244 hypothetical protein; 98.1 1.2E-05 2.6E-10 88.1 10.3 35 57-91 2-36 (493)
180 PRK07846 mycothione reductase; 98.1 2.1E-05 4.5E-10 85.2 11.8 101 57-178 166-266 (451)
181 COG1232 HemY Protoporphyrinoge 98.1 2.3E-05 5E-10 83.1 11.6 39 58-96 1-41 (444)
182 PRK04176 ribulose-1,5-biphosph 98.1 7.5E-05 1.6E-09 74.3 14.6 135 224-375 27-224 (257)
183 PLN00128 Succinate dehydrogena 98.1 0.00017 3.7E-09 81.0 19.0 57 276-332 186-248 (635)
184 PLN02464 glycerol-3-phosphate 98.1 0.00016 3.4E-09 81.3 18.7 84 247-333 200-295 (627)
185 PRK07190 hypothetical protein; 98.1 2.1E-05 4.6E-10 85.8 11.4 35 57-91 5-39 (487)
186 PRK08132 FAD-dependent oxidore 98.1 4.8E-05 1E-09 84.6 14.4 37 56-92 22-58 (547)
187 PLN02487 zeta-carotene desatur 98.1 5.9E-05 1.3E-09 83.2 14.8 40 56-95 74-113 (569)
188 PRK06116 glutathione reductase 98.1 2.2E-05 4.9E-10 85.0 11.5 102 57-178 167-269 (450)
189 TIGR01789 lycopene_cycl lycope 98.1 2.3E-05 5.1E-10 82.4 11.2 34 59-92 1-36 (370)
190 PRK07818 dihydrolipoamide dehy 98.1 2.2E-05 4.9E-10 85.4 11.4 103 57-177 172-276 (466)
191 PRK06475 salicylate hydroxylas 98.1 6.1E-05 1.3E-09 80.3 14.5 35 58-92 3-37 (400)
192 TIGR01988 Ubi-OHases Ubiquinon 98.1 2E-05 4.3E-10 83.3 10.5 33 59-91 1-33 (385)
193 PRK08020 ubiF 2-octaprenyl-3-m 98.1 2.3E-05 4.9E-10 83.3 11.0 35 56-90 4-38 (391)
194 PF13450 NAD_binding_8: NAD(P) 98.1 4.1E-06 8.8E-11 65.1 3.8 35 62-96 1-35 (68)
195 PLN02507 glutathione reductase 98.1 2.7E-05 5.8E-10 85.3 11.7 102 57-178 203-304 (499)
196 PRK07845 flavoprotein disulfid 98.1 2.7E-05 5.9E-10 84.7 11.6 102 57-178 177-278 (466)
197 COG0446 HcaD Uncharacterized N 98.0 1.6E-05 3.5E-10 84.6 9.6 98 57-175 136-238 (415)
198 PRK06115 dihydrolipoamide dehy 98.0 2.9E-05 6.3E-10 84.4 11.6 105 56-177 173-279 (466)
199 PRK09126 hypothetical protein; 98.0 2.9E-05 6.4E-10 82.4 11.1 36 56-91 2-37 (392)
200 PRK11445 putative oxidoreducta 98.0 3.6E-05 7.7E-10 80.6 11.4 34 57-91 1-34 (351)
201 PLN02612 phytoene desaturase 98.0 0.00035 7.6E-09 77.7 19.7 43 54-96 90-132 (567)
202 TIGR01421 gluta_reduc_1 glutat 98.0 2.5E-05 5.5E-10 84.5 10.3 100 57-177 166-268 (450)
203 PF01946 Thi4: Thi4 family; PD 98.0 4.7E-06 1E-10 78.5 3.9 64 57-123 17-80 (230)
204 TIGR03452 mycothione_red mycot 98.0 4.1E-05 8.9E-10 82.9 11.8 101 57-178 169-269 (452)
205 PRK08401 L-aspartate oxidase; 98.0 5.1E-05 1.1E-09 82.4 12.5 34 57-90 1-34 (466)
206 PRK13748 putative mercuric red 98.0 3.6E-05 7.8E-10 85.9 11.5 99 57-177 270-368 (561)
207 PRK05732 2-octaprenyl-6-methox 98.0 4E-05 8.7E-10 81.4 11.4 34 56-89 2-38 (395)
208 TIGR02732 zeta_caro_desat caro 98.0 0.00018 4E-09 78.3 16.6 37 59-95 1-37 (474)
209 TIGR00292 thiazole biosynthesi 98.0 0.00019 4.1E-09 71.3 15.2 135 224-375 23-223 (254)
210 TIGR02360 pbenz_hydroxyl 4-hyd 98.0 5.7E-05 1.2E-09 80.2 12.4 35 57-91 2-36 (390)
211 PRK14727 putative mercuric red 98.0 4.3E-05 9.4E-10 83.4 11.7 100 57-178 188-287 (479)
212 TIGR02028 ChlP geranylgeranyl 98.0 4.3E-05 9.4E-10 81.3 11.4 34 58-91 1-34 (398)
213 TIGR01984 UbiH 2-polyprenyl-6- 98.0 2.8E-05 6.1E-10 82.2 9.9 33 59-91 1-34 (382)
214 PRK07573 sdhA succinate dehydr 98.0 0.00029 6.3E-09 79.4 18.2 37 56-92 34-70 (640)
215 PRK05868 hypothetical protein; 98.0 6.4E-05 1.4E-09 79.3 12.0 36 57-92 1-36 (372)
216 KOG2820 FAD-dependent oxidored 98.0 0.00034 7.3E-09 69.8 15.9 81 247-331 123-209 (399)
217 PRK06481 fumarate reductase fl 97.9 8.3E-05 1.8E-09 81.7 13.1 39 56-94 60-98 (506)
218 TIGR01989 COQ6 Ubiquinone bios 97.9 0.00014 3E-09 78.5 14.6 33 58-90 1-37 (437)
219 PF12831 FAD_oxidored: FAD dep 97.9 6.3E-06 1.4E-10 88.5 4.1 106 59-172 1-148 (428)
220 PRK06753 hypothetical protein; 97.9 2.8E-05 6.1E-10 82.0 8.8 34 58-91 1-34 (373)
221 PLN02985 squalene monooxygenas 97.9 9.7E-05 2.1E-09 81.1 12.9 37 54-90 40-76 (514)
222 COG0578 GlpA Glycerol-3-phosph 97.9 0.00012 2.6E-09 78.9 13.2 80 276-359 163-256 (532)
223 COG2509 Uncharacterized FAD-de 97.9 0.0004 8.7E-09 72.2 16.4 77 269-347 165-243 (486)
224 PRK08274 tricarballylate dehyd 97.9 0.00037 8E-09 75.9 17.4 35 57-91 4-38 (466)
225 PTZ00139 Succinate dehydrogena 97.9 0.0005 1.1E-08 77.2 18.7 57 276-332 165-227 (617)
226 COG0665 DadA Glycine/D-amino a 97.9 0.00022 4.8E-09 75.4 15.1 36 56-91 3-38 (387)
227 PRK06467 dihydrolipoamide dehy 97.9 6.2E-05 1.3E-09 82.0 11.0 103 57-178 174-278 (471)
228 PRK07804 L-aspartate oxidase; 97.9 0.00059 1.3E-08 75.6 18.9 38 56-93 15-52 (541)
229 TIGR01423 trypano_reduc trypan 97.9 5.9E-05 1.3E-09 82.2 10.8 100 56-177 186-291 (486)
230 COG1231 Monoamine oxidase [Ami 97.9 0.00017 3.6E-09 75.2 13.0 69 55-124 5-79 (450)
231 PRK07045 putative monooxygenas 97.9 7.5E-05 1.6E-09 79.2 10.9 37 56-92 4-40 (388)
232 TIGR00136 gidA glucose-inhibit 97.9 7.8E-05 1.7E-09 81.8 11.0 34 58-91 1-34 (617)
233 PTZ00318 NADH dehydrogenase-li 97.9 7.2E-05 1.6E-09 80.3 10.8 94 58-175 174-281 (424)
234 PTZ00052 thioredoxin reductase 97.9 9.4E-05 2E-09 81.1 11.7 101 57-178 182-282 (499)
235 PTZ00058 glutathione reductase 97.9 0.0001 2.2E-09 81.5 12.0 102 57-177 237-339 (561)
236 PRK06185 hypothetical protein; 97.9 8.3E-05 1.8E-09 79.4 11.0 36 56-91 5-40 (407)
237 PLN02661 Putative thiazole syn 97.9 0.00016 3.5E-09 74.2 12.3 39 56-94 91-130 (357)
238 PRK06292 dihydrolipoamide dehy 97.9 6.5E-05 1.4E-09 81.6 10.2 104 56-178 168-272 (460)
239 PRK10262 thioredoxin reductase 97.8 0.0001 2.2E-09 76.1 11.0 104 56-177 145-251 (321)
240 PRK14989 nitrite reductase sub 97.8 6.6E-05 1.4E-09 86.8 10.4 99 57-176 145-247 (847)
241 PRK15317 alkyl hydroperoxide r 97.8 0.00011 2.3E-09 81.1 11.6 96 222-334 211-322 (517)
242 PRK08641 sdhA succinate dehydr 97.8 0.00066 1.4E-08 75.9 18.0 38 56-93 2-39 (589)
243 TIGR01438 TGR thioredoxin and 97.8 0.0001 2.2E-09 80.4 11.3 101 57-177 180-282 (484)
244 PRK08850 2-octaprenyl-6-methox 97.8 7.6E-05 1.6E-09 79.7 9.9 33 57-89 4-36 (405)
245 PRK06617 2-octaprenyl-6-methox 97.8 7.7E-05 1.7E-09 78.8 9.8 33 57-89 1-33 (374)
246 PRK07057 sdhA succinate dehydr 97.8 0.00081 1.8E-08 75.2 18.3 58 276-333 147-210 (591)
247 TIGR02374 nitri_red_nirB nitri 97.8 0.0001 2.2E-09 85.1 11.5 100 57-177 140-241 (785)
248 TIGR03140 AhpF alkyl hydropero 97.8 0.00012 2.6E-09 80.6 11.4 97 220-333 210-322 (515)
249 PRK06854 adenylylsulfate reduc 97.8 0.0011 2.3E-08 74.5 19.1 35 57-91 11-47 (608)
250 PRK09853 putative selenate red 97.8 7.5E-05 1.6E-09 86.4 10.0 90 220-334 537-635 (1019)
251 PRK08958 sdhA succinate dehydr 97.8 0.00066 1.4E-08 75.9 17.3 57 276-332 142-204 (588)
252 PRK05945 sdhA succinate dehydr 97.8 0.00071 1.5E-08 75.6 17.5 58 276-333 134-196 (575)
253 TIGR01316 gltA glutamate synth 97.8 4.8E-05 1E-09 82.3 8.0 89 220-332 131-228 (449)
254 PRK11749 dihydropyrimidine deh 97.8 3.6E-05 7.9E-10 83.5 7.1 90 220-333 138-236 (457)
255 TIGR01812 sdhA_frdA_Gneg succi 97.8 0.00069 1.5E-08 75.6 17.4 57 276-332 128-189 (566)
256 COG1252 Ndh NADH dehydrogenase 97.8 4.7E-05 1E-09 79.6 7.5 98 57-177 155-265 (405)
257 PRK09078 sdhA succinate dehydr 97.8 0.00086 1.9E-08 75.2 18.0 57 276-332 148-210 (598)
258 PRK06996 hypothetical protein; 97.8 0.00013 2.8E-09 77.8 10.8 36 55-90 9-48 (398)
259 PLN02172 flavin-containing mon 97.8 0.0002 4.3E-09 77.5 12.2 137 222-375 10-215 (461)
260 PRK01747 mnmC bifunctional tRN 97.8 0.00012 2.5E-09 83.3 10.9 34 57-90 260-293 (662)
261 PRK06452 sdhA succinate dehydr 97.8 0.00074 1.6E-08 75.2 16.9 56 277-332 136-196 (566)
262 PLN02815 L-aspartate oxidase 97.8 0.0011 2.3E-08 74.0 18.1 38 56-94 28-65 (594)
263 TIGR03169 Nterm_to_SelD pyridi 97.8 7.5E-05 1.6E-09 78.5 8.6 94 224-334 1-107 (364)
264 TIGR00551 nadB L-aspartate oxi 97.8 0.001 2.2E-08 72.8 17.8 57 276-334 127-189 (488)
265 TIGR03219 salicylate_mono sali 97.8 8.2E-05 1.8E-09 79.7 8.9 35 58-92 1-36 (414)
266 PF13738 Pyr_redox_3: Pyridine 97.8 0.00017 3.7E-09 68.8 10.3 96 226-338 1-142 (203)
267 KOG0029 Amine oxidase [Seconda 97.7 2.5E-05 5.4E-10 84.7 4.7 73 53-125 11-90 (501)
268 COG2907 Predicted NAD/FAD-bind 97.7 0.00036 7.8E-09 69.8 12.1 68 56-124 7-84 (447)
269 PRK07803 sdhA succinate dehydr 97.7 0.00098 2.1E-08 75.1 17.3 35 57-91 8-42 (626)
270 PRK12779 putative bifunctional 97.7 6E-05 1.3E-09 88.0 7.7 91 220-333 304-403 (944)
271 PRK06175 L-aspartate oxidase; 97.7 0.0011 2.5E-08 71.2 17.1 36 57-93 4-39 (433)
272 COG3349 Uncharacterized conser 97.7 3.1E-05 6.7E-10 82.0 4.6 47 58-104 1-47 (485)
273 PRK06069 sdhA succinate dehydr 97.7 0.0012 2.7E-08 73.7 17.6 58 276-333 136-199 (577)
274 TIGR01318 gltD_gamma_fam gluta 97.7 0.00012 2.7E-09 79.5 9.2 91 220-334 139-238 (467)
275 PF07992 Pyr_redox_2: Pyridine 97.7 7.6E-05 1.7E-09 71.1 6.8 138 224-376 1-199 (201)
276 PRK07538 hypothetical protein; 97.7 0.00018 4E-09 77.0 10.2 34 58-91 1-34 (413)
277 PRK08275 putative oxidoreducta 97.7 0.0015 3.2E-08 72.8 17.6 57 277-333 137-199 (554)
278 PRK08071 L-aspartate oxidase; 97.7 0.0013 2.8E-08 72.4 16.8 37 57-94 3-39 (510)
279 PTZ00153 lipoamide dehydrogena 97.7 0.00027 5.8E-09 79.4 11.6 110 57-178 312-431 (659)
280 KOG1336 Monodehydroascorbate/f 97.7 0.00023 5E-09 74.4 10.1 102 57-180 213-319 (478)
281 PRK12770 putative glutamate sy 97.7 8.9E-05 1.9E-09 77.6 7.1 98 221-332 17-128 (352)
282 PRK08205 sdhA succinate dehydr 97.7 0.0016 3.6E-08 72.7 17.6 58 276-333 139-205 (583)
283 PLN02546 glutathione reductase 97.7 0.00029 6.4E-09 77.9 11.4 102 56-177 251-353 (558)
284 PRK08626 fumarate reductase fl 97.6 0.00086 1.9E-08 75.8 15.3 54 278-331 159-217 (657)
285 KOG1335 Dihydrolipoamide dehyd 97.6 0.00023 5E-09 72.0 9.4 107 55-178 209-318 (506)
286 TIGR02032 GG-red-SF geranylger 97.6 0.00044 9.5E-09 70.0 11.9 93 224-332 2-146 (295)
287 TIGR00137 gid_trmFO tRNA:m(5)U 97.6 0.00016 3.5E-09 76.5 8.5 34 58-91 1-34 (433)
288 TIGR02061 aprA adenosine phosp 97.6 0.0023 5.1E-08 71.5 17.9 57 277-333 126-190 (614)
289 PRK06847 hypothetical protein; 97.6 0.00047 1E-08 72.7 12.0 54 277-333 107-162 (375)
290 PTZ00363 rab-GDP dissociation 97.6 0.0017 3.6E-08 69.7 16.2 42 56-97 3-44 (443)
291 PRK12831 putative oxidoreducta 97.6 0.00013 2.9E-09 79.1 7.9 91 220-332 138-238 (464)
292 COG3380 Predicted NAD/FAD-depe 97.6 7.2E-05 1.6E-09 72.4 5.0 39 58-96 2-40 (331)
293 TIGR02462 pyranose_ox pyranose 97.6 0.0029 6.2E-08 69.4 18.0 37 58-94 1-37 (544)
294 TIGR01811 sdhA_Bsu succinate d 97.6 0.00081 1.8E-08 75.3 14.0 32 60-91 1-32 (603)
295 PRK06263 sdhA succinate dehydr 97.6 0.0017 3.7E-08 72.1 16.1 57 276-332 133-195 (543)
296 PF00743 FMO-like: Flavin-bind 97.6 0.00044 9.5E-09 76.0 11.2 138 223-375 2-194 (531)
297 PF04820 Trp_halogenase: Trypt 97.6 0.00053 1.1E-08 74.1 11.7 53 277-332 154-209 (454)
298 PRK11883 protoporphyrinogen ox 97.6 5.8E-05 1.3E-09 81.7 4.4 39 58-96 1-41 (451)
299 PF06039 Mqo: Malate:quinone o 97.6 4E-05 8.8E-10 80.0 2.9 92 278-373 182-290 (488)
300 PRK12778 putative bifunctional 97.6 0.00018 3.8E-09 83.0 8.4 90 220-332 429-527 (752)
301 PRK07208 hypothetical protein; 97.6 6.9E-05 1.5E-09 81.9 4.7 42 55-96 2-43 (479)
302 PLN02268 probable polyamine ox 97.6 6.9E-05 1.5E-09 80.8 4.7 40 58-97 1-40 (435)
303 TIGR01176 fum_red_Fp fumarate 97.5 0.0028 6.1E-08 70.7 17.4 57 276-332 131-193 (580)
304 PRK09077 L-aspartate oxidase; 97.5 0.0033 7.2E-08 69.6 17.6 37 57-94 8-44 (536)
305 TIGR01317 GOGAT_sm_gam glutama 97.5 0.00032 7E-09 76.6 8.8 90 220-333 141-239 (485)
306 KOG2844 Dimethylglycine dehydr 97.5 0.0017 3.7E-08 70.2 13.5 82 249-335 160-244 (856)
307 PRK08849 2-octaprenyl-3-methyl 97.5 0.0001 2.3E-09 78.0 4.4 34 57-90 3-36 (384)
308 PRK12775 putative trifunctiona 97.5 0.00021 4.5E-09 84.4 7.2 92 220-333 428-528 (1006)
309 TIGR00137 gid_trmFO tRNA:m(5)U 97.5 0.00059 1.3E-08 72.3 9.8 107 224-344 2-147 (433)
310 PLN02852 ferredoxin-NADP+ redu 97.4 0.00022 4.7E-09 77.3 6.6 91 221-333 25-125 (491)
311 PRK12809 putative oxidoreducta 97.4 0.00036 7.7E-09 78.9 8.7 90 220-333 308-406 (639)
312 TIGR01789 lycopene_cycl lycope 97.4 0.00046 1E-08 72.7 8.9 96 224-336 1-140 (370)
313 PRK07236 hypothetical protein; 97.4 0.00071 1.5E-08 71.7 10.4 99 223-340 7-158 (386)
314 TIGR00562 proto_IX_ox protopor 97.4 0.00012 2.5E-09 79.7 4.5 40 57-96 2-45 (462)
315 PRK09231 fumarate reductase fl 97.4 0.0041 8.9E-08 69.5 16.5 38 57-94 4-43 (582)
316 PLN02576 protoporphyrinogen ox 97.4 0.00015 3.2E-09 79.7 4.9 42 56-97 11-53 (496)
317 TIGR03315 Se_ygfK putative sel 97.4 0.00046 9.9E-09 80.4 8.8 89 220-333 535-632 (1012)
318 PRK12416 protoporphyrinogen ox 97.4 0.00014 3E-09 79.1 4.4 41 57-97 1-47 (463)
319 COG0445 GidA Flavin-dependent 97.4 0.00018 3.9E-09 76.2 4.9 106 57-173 4-157 (621)
320 PRK12769 putative oxidoreducta 97.4 0.00047 1E-08 78.2 8.6 90 220-333 325-423 (654)
321 KOG2665 Predicted FAD-dependen 97.4 0.0069 1.5E-07 60.1 15.2 41 53-93 44-86 (453)
322 TIGR02733 desat_CrtD C-3',4' d 97.4 0.00017 3.7E-09 79.1 4.6 42 58-99 2-43 (492)
323 COG0493 GltD NADPH-dependent g 97.3 0.00046 9.9E-09 74.0 7.3 89 220-332 121-218 (457)
324 TIGR03143 AhpF_homolog putativ 97.3 0.0013 2.9E-08 73.0 11.2 91 224-334 6-114 (555)
325 PRK12814 putative NADPH-depend 97.3 0.00064 1.4E-08 77.0 8.6 90 220-333 191-289 (652)
326 TIGR00031 UDP-GALP_mutase UDP- 97.3 0.00024 5.2E-09 74.4 4.8 39 57-95 1-39 (377)
327 KOG2853 Possible oxidoreductas 97.3 0.011 2.5E-07 59.1 15.9 36 57-92 86-125 (509)
328 PLN02529 lysine-specific histo 97.3 0.00029 6.4E-09 79.6 5.7 56 38-96 144-199 (738)
329 KOG0399 Glutamate synthase [Am 97.3 0.00083 1.8E-08 76.0 8.8 95 215-333 1778-1881(2142)
330 COG1148 HdrA Heterodisulfide r 97.3 0.00079 1.7E-08 70.2 8.1 77 215-305 117-206 (622)
331 PLN02328 lysine-specific histo 97.3 0.00074 1.6E-08 76.9 8.7 44 53-96 234-277 (808)
332 PRK12810 gltD glutamate syntha 97.3 0.00078 1.7E-08 73.4 8.6 90 220-333 141-239 (471)
333 KOG2495 NADH-dehydrogenase (ub 97.3 0.00022 4.7E-09 73.3 3.8 101 57-177 218-332 (491)
334 PRK05335 tRNA (uracil-5-)-meth 97.2 0.00027 5.9E-09 74.4 4.2 35 57-91 2-36 (436)
335 TIGR02731 phytoene_desat phyto 97.2 0.00029 6.4E-09 76.4 4.4 38 59-96 1-38 (453)
336 PRK01438 murD UDP-N-acetylmura 97.2 0.0016 3.5E-08 71.1 10.2 77 221-335 15-91 (480)
337 COG1635 THI4 Ribulose 1,5-bisp 97.2 0.008 1.7E-07 56.8 12.6 135 224-375 32-229 (262)
338 KOG1298 Squalene monooxygenase 97.2 0.0022 4.8E-08 65.1 9.5 35 55-89 43-77 (509)
339 PLN02463 lycopene beta cyclase 97.2 0.0029 6.2E-08 68.2 11.2 93 224-334 30-169 (447)
340 COG0492 TrxB Thioredoxin reduc 97.2 0.0029 6.2E-08 64.4 10.6 94 224-336 5-117 (305)
341 PF01134 GIDA: Glucose inhibit 97.1 0.0053 1.1E-07 64.2 12.7 92 224-332 1-150 (392)
342 PRK07512 L-aspartate oxidase; 97.1 0.012 2.6E-07 64.8 16.1 33 57-91 9-41 (513)
343 PLN02568 polyamine oxidase 97.1 0.00049 1.1E-08 75.9 5.0 41 56-96 4-49 (539)
344 TIGR02730 carot_isom carotene 97.1 0.00044 9.6E-09 75.8 4.6 40 58-97 1-40 (493)
345 TIGR01372 soxA sarcosine oxida 97.1 0.003 6.5E-08 74.9 11.8 100 222-335 163-287 (985)
346 PRK07121 hypothetical protein; 97.1 0.00068 1.5E-08 74.3 5.8 41 56-96 19-59 (492)
347 PLN02927 antheraxanthin epoxid 97.1 0.00055 1.2E-08 76.5 4.9 36 55-90 79-114 (668)
348 PLN02661 Putative thiazole syn 97.1 0.012 2.7E-07 60.6 14.2 136 224-375 94-297 (357)
349 PRK08244 hypothetical protein; 97.0 0.0055 1.2E-07 67.2 12.3 54 278-332 101-157 (493)
350 PRK06184 hypothetical protein; 97.0 0.0051 1.1E-07 67.7 12.0 52 279-332 111-166 (502)
351 PRK01438 murD UDP-N-acetylmura 97.0 0.001 2.2E-08 72.8 6.4 90 57-189 16-105 (480)
352 PRK12266 glpD glycerol-3-phosp 97.0 0.00079 1.7E-08 74.0 5.4 40 56-95 5-44 (508)
353 PTZ00367 squalene epoxidase; P 97.0 0.00071 1.5E-08 74.9 4.9 35 56-90 32-66 (567)
354 PLN02676 polyamine oxidase 97.0 0.00078 1.7E-08 73.6 4.9 42 56-97 25-67 (487)
355 PRK08163 salicylate hydroxylas 97.0 0.006 1.3E-07 64.8 11.4 50 280-332 112-164 (396)
356 TIGR01813 flavo_cyto_c flavocy 96.9 0.00077 1.7E-08 72.8 4.6 56 276-332 129-190 (439)
357 PRK07333 2-octaprenyl-6-methox 96.9 0.0072 1.6E-07 64.3 11.9 53 277-332 111-165 (403)
358 PRK13369 glycerol-3-phosphate 96.9 0.00098 2.1E-08 73.2 5.3 39 55-93 4-42 (502)
359 PTZ00188 adrenodoxin reductase 96.9 0.0016 3.4E-08 69.9 6.5 90 221-333 38-137 (506)
360 PRK06834 hypothetical protein; 96.9 0.0073 1.6E-07 66.0 11.9 53 278-333 101-155 (488)
361 PRK08773 2-octaprenyl-3-methyl 96.9 0.01 2.2E-07 63.0 12.4 54 277-333 113-168 (392)
362 PRK07190 hypothetical protein; 96.9 0.01 2.2E-07 65.0 12.5 51 279-332 111-163 (487)
363 PRK08294 phenol 2-monooxygenas 96.9 0.00098 2.1E-08 75.1 4.8 36 56-91 31-67 (634)
364 PRK07608 ubiquinone biosynthes 96.9 0.0076 1.7E-07 63.8 11.4 51 278-332 112-165 (388)
365 PLN02697 lycopene epsilon cycl 96.9 0.007 1.5E-07 66.4 11.2 95 223-334 109-248 (529)
366 KOG2852 Possible oxidoreductas 96.9 0.0035 7.6E-08 61.4 7.6 35 55-89 8-48 (380)
367 PRK07364 2-octaprenyl-6-methox 96.9 0.0069 1.5E-07 64.8 10.9 55 278-332 122-179 (415)
368 KOG0685 Flavin-containing amin 96.8 0.0011 2.3E-08 69.4 4.4 40 57-96 21-61 (498)
369 KOG2415 Electron transfer flav 96.8 0.00094 2E-08 68.3 3.8 43 55-97 74-122 (621)
370 PRK09897 hypothetical protein; 96.8 0.012 2.6E-07 64.7 12.4 45 287-333 117-165 (534)
371 COG0562 Glf UDP-galactopyranos 96.8 0.0014 3E-08 65.2 4.4 39 57-95 1-39 (374)
372 KOG2614 Kynurenine 3-monooxyge 96.8 0.0014 2.9E-08 67.6 4.3 37 57-93 2-38 (420)
373 PRK12771 putative glutamate sy 96.8 0.0029 6.3E-08 70.6 7.3 89 220-333 135-233 (564)
374 PRK13984 putative oxidoreducta 96.7 0.0025 5.5E-08 71.7 6.7 90 220-333 281-379 (604)
375 PRK05714 2-octaprenyl-3-methyl 96.7 0.0099 2.1E-07 63.4 10.7 57 279-340 114-172 (405)
376 PRK12837 3-ketosteroid-delta-1 96.7 0.0018 3.9E-08 71.3 5.0 39 56-95 6-44 (513)
377 PRK05192 tRNA uridine 5-carbox 96.7 0.011 2.4E-07 65.3 10.7 92 224-332 6-155 (618)
378 PRK12835 3-ketosteroid-delta-1 96.7 0.0022 4.8E-08 71.6 5.4 41 55-95 9-49 (584)
379 COG2072 TrkA Predicted flavopr 96.6 0.012 2.7E-07 63.3 10.4 136 223-376 9-187 (443)
380 PRK08255 salicylyl-CoA 5-hydro 96.6 0.0018 4E-08 74.7 4.3 34 58-91 1-36 (765)
381 PRK06753 hypothetical protein; 96.6 0.014 2.9E-07 61.5 10.5 46 291-341 110-157 (373)
382 PF00732 GMC_oxred_N: GMC oxid 96.6 0.0022 4.7E-08 65.3 4.2 66 279-347 195-268 (296)
383 PRK11445 putative oxidoreducta 96.5 0.036 7.9E-07 57.9 13.3 45 288-332 109-155 (351)
384 COG0644 FixC Dehydrogenases (f 96.5 0.028 6E-07 59.8 12.5 93 224-332 5-150 (396)
385 PRK12834 putative FAD-binding 96.5 0.0026 5.5E-08 70.8 4.7 38 57-94 4-43 (549)
386 PRK05868 hypothetical protein; 96.5 0.029 6.3E-07 59.1 12.5 48 289-341 116-165 (372)
387 KOG2404 Fumarate reductase, fl 96.5 0.013 2.9E-07 58.3 8.9 38 57-94 9-46 (477)
388 PRK12845 3-ketosteroid-delta-1 96.5 0.0033 7.1E-08 69.9 5.4 44 55-99 14-57 (564)
389 PF01946 Thi4: Thi4 family; PD 96.5 0.047 1E-06 51.9 12.2 135 224-375 19-218 (230)
390 PRK07395 L-aspartate oxidase; 96.5 0.0033 7.2E-08 69.7 5.2 38 56-94 8-45 (553)
391 PLN03000 amine oxidase 96.5 0.0032 6.9E-08 72.0 5.0 43 56-98 183-225 (881)
392 PF06100 Strep_67kDa_ant: Stre 96.4 0.021 4.5E-07 60.8 10.7 39 57-95 2-44 (500)
393 TIGR01790 carotene-cycl lycope 96.4 0.021 4.6E-07 60.4 11.0 93 224-334 1-141 (388)
394 PRK12844 3-ketosteroid-delta-1 96.4 0.003 6.6E-08 70.2 4.7 40 57-96 6-45 (557)
395 PRK08020 ubiF 2-octaprenyl-3-m 96.4 0.02 4.4E-07 60.7 10.6 53 278-333 113-168 (391)
396 PRK12839 hypothetical protein; 96.4 0.0039 8.5E-08 69.4 5.3 41 56-96 7-47 (572)
397 PRK09126 hypothetical protein; 96.3 0.024 5.3E-07 60.0 10.7 49 281-332 114-165 (392)
398 PF12831 FAD_oxidored: FAD dep 96.3 0.0033 7.2E-08 67.6 3.9 92 224-331 1-147 (428)
399 TIGR01984 UbiH 2-polyprenyl-6- 96.3 0.042 9.2E-07 58.0 12.3 53 277-332 105-160 (382)
400 KOG1346 Programmed cell death 96.3 0.0084 1.8E-07 61.5 6.4 103 56-177 346-452 (659)
401 TIGR01988 Ubi-OHases Ubiquinon 96.3 0.034 7.3E-07 58.6 11.4 52 278-332 107-161 (385)
402 PRK06567 putative bifunctional 96.2 0.0065 1.4E-07 70.0 5.8 36 220-269 381-416 (1028)
403 PRK08849 2-octaprenyl-3-methyl 96.2 0.035 7.6E-07 58.8 11.1 51 285-340 118-171 (384)
404 PRK08850 2-octaprenyl-6-methox 96.2 0.043 9.2E-07 58.6 11.7 49 281-332 115-166 (405)
405 PTZ00306 NADH-dependent fumara 96.2 0.0055 1.2E-07 73.9 5.3 41 55-95 407-447 (1167)
406 PRK12843 putative FAD-binding 96.1 0.0074 1.6E-07 67.5 5.8 42 56-97 15-56 (578)
407 KOG1276 Protoporphyrinogen oxi 96.1 0.0063 1.4E-07 62.9 4.7 40 56-95 10-51 (491)
408 PRK07045 putative monooxygenas 96.1 0.059 1.3E-06 57.1 12.5 58 278-340 107-169 (388)
409 PRK06481 fumarate reductase fl 96.1 0.048 1E-06 60.0 12.0 53 278-331 191-248 (506)
410 PLN02976 amine oxidase 96.1 0.006 1.3E-07 72.4 4.8 40 56-95 692-731 (1713)
411 PRK12266 glpD glycerol-3-phosp 96.0 0.046 1E-06 60.2 11.2 54 282-335 160-217 (508)
412 TIGR02023 BchP-ChlP geranylger 96.0 0.053 1.1E-06 57.5 11.2 53 279-332 94-153 (388)
413 PRK07538 hypothetical protein; 96.0 0.031 6.7E-07 59.8 9.5 52 281-332 106-163 (413)
414 KOG2311 NAD/FAD-utilizing prot 96.0 0.013 2.9E-07 61.2 6.0 35 55-89 26-60 (679)
415 PRK07494 2-octaprenyl-6-methox 95.9 0.058 1.3E-06 57.1 11.3 51 278-332 112-165 (388)
416 PRK06996 hypothetical protein; 95.9 0.042 9E-07 58.5 10.2 55 277-332 115-172 (398)
417 PRK06617 2-octaprenyl-6-methox 95.9 0.05 1.1E-06 57.4 10.7 58 277-340 104-164 (374)
418 COG3075 GlpB Anaerobic glycero 95.9 0.0074 1.6E-07 60.3 3.9 56 276-331 257-314 (421)
419 PF13434 K_oxygenase: L-lysine 95.9 0.018 3.9E-07 59.8 6.8 37 55-91 188-226 (341)
420 PF05834 Lycopene_cycl: Lycope 95.8 0.07 1.5E-06 56.3 11.2 95 225-334 2-142 (374)
421 PRK05335 tRNA (uracil-5-)-meth 95.8 0.022 4.7E-07 60.3 7.1 34 224-271 4-37 (436)
422 COG1251 NirB NAD(P)H-nitrite r 95.8 0.036 7.8E-07 61.3 8.9 127 224-376 5-144 (793)
423 TIGR02028 ChlP geranylgeranyl 95.8 0.087 1.9E-06 56.1 11.8 22 224-245 2-23 (398)
424 KOG1399 Flavin-containing mono 95.8 0.057 1.2E-06 57.9 10.3 102 222-338 6-157 (448)
425 PRK02106 choline dehydrogenase 95.8 0.01 2.2E-07 66.2 4.7 35 57-91 5-40 (560)
426 TIGR03219 salicylate_mono sali 95.7 0.05 1.1E-06 58.2 9.8 39 291-332 117-157 (414)
427 PRK06185 hypothetical protein; 95.7 0.11 2.3E-06 55.4 12.3 53 278-332 109-167 (407)
428 PRK05732 2-octaprenyl-6-methox 95.7 0.086 1.9E-06 55.8 11.3 51 280-333 115-168 (395)
429 PRK13800 putative oxidoreducta 95.7 0.011 2.3E-07 69.6 4.6 36 56-91 12-47 (897)
430 TIGR00136 gidA glucose-inhibit 95.6 0.083 1.8E-06 58.5 11.0 50 281-333 100-153 (617)
431 TIGR01813 flavo_cyto_c flavocy 95.6 0.13 2.7E-06 55.6 12.5 33 225-270 2-34 (439)
432 COG1053 SdhA Succinate dehydro 95.5 0.012 2.6E-07 65.0 4.0 36 56-91 5-40 (562)
433 PRK08294 phenol 2-monooxygenas 95.4 0.13 2.7E-06 58.3 11.9 61 279-341 143-215 (634)
434 PLN00093 geranylgeranyl diphos 95.4 0.16 3.4E-06 55.0 12.1 22 224-245 41-62 (450)
435 PRK14106 murD UDP-N-acetylmura 95.4 0.032 6.9E-07 60.5 6.9 35 56-90 4-38 (450)
436 KOG2960 Protein involved in th 95.2 0.0081 1.8E-07 56.2 1.4 39 57-95 76-116 (328)
437 KOG4716 Thioredoxin reductase 95.2 0.025 5.5E-07 56.7 4.6 107 54-177 195-303 (503)
438 KOG0404 Thioredoxin reductase 95.1 0.097 2.1E-06 49.6 7.9 106 224-334 10-124 (322)
439 PLN02985 squalene monooxygenas 95.1 0.2 4.3E-06 55.2 11.8 59 278-340 148-212 (514)
440 KOG4254 Phytoene desaturase [C 95.0 0.027 5.9E-07 58.7 4.6 50 55-104 12-61 (561)
441 PF13454 NAD_binding_9: FAD-NA 94.9 0.24 5.3E-06 45.1 10.3 33 226-267 1-33 (156)
442 TIGR01810 betA choline dehydro 94.9 0.025 5.3E-07 62.7 4.3 33 59-91 1-34 (532)
443 COG3380 Predicted NAD/FAD-depe 94.9 0.094 2E-06 51.3 7.5 34 224-271 3-36 (331)
444 COG2303 BetA Choline dehydroge 94.9 0.03 6.6E-07 62.0 4.8 37 55-91 5-41 (542)
445 COG3573 Predicted oxidoreducta 94.9 0.032 7E-07 55.8 4.4 36 56-91 4-39 (552)
446 PF13241 NAD_binding_7: Putati 94.8 0.034 7.5E-07 46.9 4.0 35 56-90 6-40 (103)
447 COG1206 Gid NAD(FAD)-utilizing 94.8 0.044 9.6E-07 54.9 5.3 34 57-90 3-36 (439)
448 PRK07121 hypothetical protein; 94.6 0.28 6.1E-06 53.8 11.6 53 278-332 178-237 (492)
449 KOG2755 Oxidoreductase [Genera 94.5 0.059 1.3E-06 52.3 5.1 92 224-335 1-105 (334)
450 KOG0405 Pyridine nucleotide-di 94.4 0.083 1.8E-06 53.4 6.0 103 54-178 186-291 (478)
451 TIGR03862 flavo_PP4765 unchara 94.4 0.21 4.5E-06 52.4 9.4 81 265-347 72-160 (376)
452 PLN02785 Protein HOTHEAD 94.3 0.05 1.1E-06 60.7 4.9 36 55-91 53-88 (587)
453 TIGR01470 cysG_Nterm siroheme 94.2 0.056 1.2E-06 51.8 4.5 33 57-89 9-41 (205)
454 PRK06719 precorrin-2 dehydroge 94.1 0.068 1.5E-06 48.9 4.6 34 56-89 12-45 (157)
455 PF13450 NAD_binding_8: NAD(P) 94.0 0.07 1.5E-06 41.3 3.8 33 227-273 1-33 (68)
456 PF01210 NAD_Gly3P_dh_N: NAD-d 93.8 0.063 1.4E-06 49.1 3.8 32 59-90 1-32 (157)
457 TIGR02485 CobZ_N-term precorri 93.8 0.036 7.8E-07 59.7 2.5 53 277-331 123-180 (432)
458 COG4529 Uncharacterized protei 93.7 0.4 8.7E-06 51.0 9.8 21 224-244 3-23 (474)
459 PRK08255 salicylyl-CoA 5-hydro 93.7 0.21 4.6E-06 57.9 8.5 21 224-244 2-22 (765)
460 PRK06718 precorrin-2 dehydroge 93.3 0.11 2.4E-06 49.7 4.5 34 56-89 9-42 (202)
461 KOG3851 Sulfide:quinone oxidor 93.3 0.047 1E-06 54.5 2.0 96 221-334 38-145 (446)
462 TIGR02352 thiamin_ThiO glycine 93.2 0.58 1.3E-05 48.1 10.3 82 249-335 111-194 (337)
463 PF02737 3HCDH_N: 3-hydroxyacy 93.1 0.1 2.3E-06 48.9 4.1 32 59-90 1-32 (180)
464 PRK14106 murD UDP-N-acetylmura 93.1 0.47 1E-05 51.4 9.7 76 221-333 4-79 (450)
465 COG0445 GidA Flavin-dependent 93.0 0.15 3.3E-06 54.7 5.5 24 224-247 6-29 (621)
466 COG0569 TrkA K+ transport syst 92.9 0.1 2.2E-06 50.9 3.7 33 58-90 1-33 (225)
467 PRK02705 murD UDP-N-acetylmura 92.7 0.11 2.4E-06 56.5 4.2 33 59-91 2-34 (459)
468 PF03721 UDPG_MGDP_dh_N: UDP-g 92.6 0.11 2.3E-06 49.1 3.3 34 58-91 1-34 (185)
469 PRK08401 L-aspartate oxidase; 92.4 1.2 2.6E-05 48.4 11.8 54 277-334 120-175 (466)
470 COG3486 IucD Lysine/ornithine 92.4 0.67 1.4E-05 48.2 9.0 34 58-91 188-225 (436)
471 PF01494 FAD_binding_3: FAD bi 92.4 0.1 2.2E-06 53.9 3.3 36 224-273 3-38 (356)
472 COG1206 Gid NAD(FAD)-utilizing 92.1 0.34 7.3E-06 48.8 6.1 96 224-336 5-142 (439)
473 PRK06475 salicylate hydroxylas 92.0 0.18 3.8E-06 53.7 4.6 35 223-271 3-37 (400)
474 COG3634 AhpF Alkyl hydroperoxi 92.0 0.5 1.1E-05 47.9 7.3 108 220-332 209-323 (520)
475 KOG2404 Fumarate reductase, fl 91.9 0.7 1.5E-05 46.4 8.0 41 291-332 159-204 (477)
476 COG0654 UbiH 2-polyprenyl-6-me 91.9 0.18 3.9E-06 53.5 4.4 55 224-292 4-60 (387)
477 PF01488 Shikimate_DH: Shikima 91.8 0.22 4.7E-06 44.3 4.2 34 56-89 11-45 (135)
478 TIGR03377 glycerol3P_GlpA glyc 91.8 0.77 1.7E-05 50.7 9.4 85 248-335 102-191 (516)
479 COG1086 Predicted nucleoside-d 91.8 0.32 7E-06 52.6 6.0 40 55-94 114-155 (588)
480 KOG0029 Amine oxidase [Seconda 91.7 0.17 3.6E-06 55.3 4.0 39 221-273 14-52 (501)
481 PF02558 ApbA: Ketopantoate re 91.7 0.22 4.7E-06 45.0 4.1 73 225-330 1-75 (151)
482 KOG3855 Monooxygenase involved 91.3 0.23 5E-06 51.4 4.2 34 56-89 35-72 (481)
483 PF01262 AlaDh_PNT_C: Alanine 91.2 0.26 5.5E-06 45.6 4.2 34 56-89 19-52 (168)
484 PTZ00306 NADH-dependent fumara 91.0 1.4 3.1E-05 53.5 11.2 51 282-332 549-618 (1167)
485 KOG0042 Glycerol-3-phosphate d 90.9 0.13 2.8E-06 55.0 2.0 39 57-95 67-105 (680)
486 PRK07819 3-hydroxybutyryl-CoA 90.8 0.26 5.7E-06 49.9 4.2 34 57-90 5-38 (286)
487 PRK07066 3-hydroxybutyryl-CoA 90.7 0.31 6.8E-06 50.0 4.6 35 56-90 6-40 (321)
488 PRK06129 3-hydroxyacyl-CoA deh 90.7 0.25 5.3E-06 50.7 3.9 33 58-90 3-35 (308)
489 KOG2311 NAD/FAD-utilizing prot 90.6 0.7 1.5E-05 48.8 7.0 24 224-247 30-53 (679)
490 KOG1800 Ferredoxin/adrenodoxin 90.6 0.53 1.2E-05 48.4 6.0 86 224-332 22-118 (468)
491 PRK08293 3-hydroxybutyryl-CoA 90.6 0.29 6.2E-06 49.6 4.2 34 57-90 3-36 (287)
492 PF01488 Shikimate_DH: Shikima 90.6 0.72 1.6E-05 40.9 6.3 85 220-341 10-94 (135)
493 PRK11064 wecC UDP-N-acetyl-D-m 90.5 0.26 5.7E-06 52.7 4.0 35 57-91 3-37 (415)
494 PRK15116 sulfur acceptor prote 90.4 0.49 1.1E-05 47.2 5.5 102 56-172 29-131 (268)
495 PRK07588 hypothetical protein; 90.3 0.26 5.6E-06 52.2 3.8 34 224-271 2-35 (391)
496 PRK11883 protoporphyrinogen ox 90.3 0.32 6.9E-06 52.5 4.5 37 224-272 2-38 (451)
497 PRK04148 hypothetical protein; 90.2 0.26 5.6E-06 43.5 3.0 34 57-91 17-50 (134)
498 cd01080 NAD_bind_m-THF_DH_Cycl 90.2 0.43 9.4E-06 44.1 4.6 34 56-89 43-77 (168)
499 PRK05808 3-hydroxybutyryl-CoA 89.9 0.31 6.8E-06 49.2 3.8 34 57-90 3-36 (282)
500 PRK09260 3-hydroxybutyryl-CoA 89.9 0.3 6.5E-06 49.5 3.7 33 58-90 2-34 (288)
No 1
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=3.3e-85 Score=650.32 Aligned_cols=485 Identities=56% Similarity=0.952 Sum_probs=436.2
Q ss_pred chhhhhhhhhccCccchhhhhhheeccccceeecccCCCcCccCCCCCCCCCCCeEEEECCcHHHHHHHHhcccCCCeEE
Q 045826 5 TFYEGAIRAFQDRSLLSKILVIGTVSGGSAVAFSDSRPFQRIYGDSGEGEFKKKKVVVLGTGWAGTTFLKILKSNSFEVQ 84 (584)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~ 84 (584)
.++.+..+.....+...+++..+.++++.+.++...++... .+..++...+++|||+|+||+|.++++.|....++|+
T Consensus 5 ~~~~r~s~~~~~~~s~~k~l~~st~~g~~~~~y~~an~~~~--~~~~~~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~ 82 (491)
T KOG2495|consen 5 SSLARISRTTSSSKSTLKILLASTLSGGGLVAYSEANPSEK--VPGPKNGGKKKRVVVLGSGWGAISLLKKLDTSLYDVT 82 (491)
T ss_pred hhHHhhccccccCcchhhhhhhheeccceeEEEecCCcccc--CCCCCCCCCCceEEEEcCchHHHHHHHhccccccceE
Confidence 34555555555666667888888898888888876664443 2223455678999999999999999999999999999
Q ss_pred EEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCC
Q 045826 85 VVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYD 164 (584)
Q Consensus 85 lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD 164 (584)
||++++||.|+|++|.+..|+++.+++++|++.+.++....+.|++++...||++++.|.++...+.+. ..++.+.||
T Consensus 83 vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~--~~e~~i~YD 160 (491)
T KOG2495|consen 83 VVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSS--DKEFVIGYD 160 (491)
T ss_pred EeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEEEeeeccCCC--cceeeeccc
Confidence 999999999999999999999999999999999998886678999999999999999999987654322 335799999
Q ss_pred EEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHH
Q 045826 165 ILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDF 244 (584)
Q Consensus 165 ~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~ 244 (584)
|||+|+|+.++.|++||+.||+.+++.++||.++|+++.+++|.++.+.++++++++.+++|||||||||+|+|++|+++
T Consensus 161 yLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Df 240 (491)
T KOG2495|consen 161 YLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADF 240 (491)
T ss_pred EEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecc
Q 045826 245 VIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYG 324 (584)
Q Consensus 245 ~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D 324 (584)
..+++.+.||++....+|||+++.|.+|++|+..+.+++++.+.+.||++.+++.|+.|++..+..... +|+..+||+.
T Consensus 241 i~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~-~g~~~~iPYG 319 (491)
T KOG2495|consen 241 IPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTK-DGEIEEIPYG 319 (491)
T ss_pred HHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcC-CCceeeecce
Confidence 999999999999999999999999999999999999999999999999999999999999999988875 6887889999
Q ss_pred eEEEccCCCCCchHHHHHHHhCCcCCCceeeCCCCccCCCCCEEEeCccccccccchhhhHHHHhhhccccCCCCcchhh
Q 045826 325 MVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEWLRVEGCESVYALGDCATINQRKVMEDISAIFSKADKNNTGKLNVKD 404 (584)
Q Consensus 325 ~vI~a~G~~~~p~~~~l~~~~~l~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~a~~~~~G~~~~~~ 404 (584)
++||+||+.+.|.+..|.++++-.++.++.||++||+++.+||||+|||+..
T Consensus 320 ~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~---------------------------- 371 (491)
T KOG2495|consen 320 LLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQ---------------------------- 371 (491)
T ss_pred EEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEecccccc----------------------------
Confidence 9999999999999999988776644668999999999999999999999942
Q ss_pred hHHHHHhhhccCchhHHHHhHhhhhhHHHHhhhccCCcccccccccHHHHHHHhhhhcccCCCCCcchhhHHHHHHHHHH
Q 045826 405 LKEVVKDICERYPQVEIYLNKKQLKNINVLLKNAEEDPKKASMEFDIEKFKKALSEVDSQMKHLPATAQVAAQEGAYLAN 484 (584)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ta~~A~~qg~~~a~ 484 (584)
..+++|||+|.|||+|+|+
T Consensus 372 -------------------------------------------------------------~~~~~tAQVA~QqG~yLAk 390 (491)
T KOG2495|consen 372 -------------------------------------------------------------RGLKPTAQVAEQQGAYLAK 390 (491)
T ss_pred -------------------------------------------------------------ccCccHHHHHHHHHHHHHH
Confidence 3467899999999999999
Q ss_pred HHhhhhhcccCCCCCc-cccCCCCCCCCCCeeccccceeEeCCcceeecccCCCc-eecchHHHHHHHHHHHHHhccchh
Q 045826 485 CFNRMEQCEKNPEGPL-RFRGAGRHRFHPFRYKHFGQFAPLGGEEAAAQLELPFD-WISVGRGSQWLWYSVYASKQISWR 562 (584)
Q Consensus 485 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~G~~~~lG~~~av~~~~~~~~-~~~~g~~a~~~~~~~~~~~~~~~~ 562 (584)
||+.+.+++..++.+. ++++......+||+|+|+|+++|||+++|++++|. |. |...|.++|++||++|++++.|||
T Consensus 391 ~fn~m~k~~~~~e~~~~r~~~~~~~~f~PF~Y~H~GalA~lG~ekaiAdl~~-g~~~~~~G~~s~~lWrS~Yls~~~S~R 469 (491)
T KOG2495|consen 391 NFNKMGKGGNLPEGPSARLRGEGRHQFKPFKYKHLGALAYLGREKAIADLPV-GKMWVSAGGSSFWLWRSAYLSKLVSWR 469 (491)
T ss_pred HHHHHhcccCCCccchhhhhhhhhhccCCcccccccceeeccccchhhcCcc-CCeeeeccchhhHHHHHHHHHHhhhhh
Confidence 9999998876655444 66666667789999999999999999999999443 55 889999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCCCC
Q 045826 563 TRFLVISDWRRRFMFGRDSSRI 584 (584)
Q Consensus 563 ~~~~~~~~w~~~~~~~~~~~~~ 584 (584)
+|++++.||++.++||||+|++
T Consensus 470 ~R~lV~~dW~~~~~fGRd~s~i 491 (491)
T KOG2495|consen 470 NRFLVAIDWEKTFFFGRDSSSI 491 (491)
T ss_pred hheeeeeheeeeEEeccccccC
Confidence 9999999999999999999986
No 2
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.7e-74 Score=591.15 Aligned_cols=401 Identities=34% Similarity=0.565 Sum_probs=362.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcccC--CCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSN--SFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAEC 133 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~--g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v 133 (584)
.+++|||||||++|+.+|..|.+. +++|||||++++|.|+|++|++++|.++.+++..|++.++++.+ +++|++++|
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~-~v~~~~~~V 80 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSG-NVQFVQGEV 80 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccC-ceEEEEEEE
Confidence 468999999999999999999965 49999999999999999999999999999999999999999766 688999999
Q ss_pred EEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCC
Q 045826 134 YKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPN 213 (584)
Q Consensus 134 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 213 (584)
++||+++++|.+.+.. .+.||+||+|+|+.+++|++||+.||++++++++||.++++++...++.++...
T Consensus 81 ~~ID~~~k~V~~~~~~----------~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~ 150 (405)
T COG1252 81 TDIDRDAKKVTLADLG----------EISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEE 150 (405)
T ss_pred EEEcccCCEEEeCCCc----------cccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999998732 899999999999999999999999999999999999999999999999987543
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcE
Q 045826 214 LSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGID 293 (584)
Q Consensus 214 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~ 293 (584)
.+ +..++|+|||||++|+|+|++|+++..+.+.+ +.....+.+|+||++++++||.+++++++++++.|+++||+
T Consensus 151 ~~----~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~ 225 (405)
T COG1252 151 DD----RALLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVE 225 (405)
T ss_pred cc----cceeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCE
Confidence 21 45679999999999999999999998776666 44433478999999999999999999999999999999999
Q ss_pred EEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCCcCCCceeeCCCCccCCCCCEEEeCcc
Q 045826 294 LKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEWLRVEGCESVYALGDC 373 (584)
Q Consensus 294 v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~~~g~i~Vd~~l~~~~~~~VfaiGD~ 373 (584)
+++++.|++|++++|++.+ |++ +|++|++|||+|++++|.++.+. ....+.+|++.||++||++++|||||+|||
T Consensus 226 v~l~~~Vt~v~~~~v~~~~---g~~-~I~~~tvvWaaGv~a~~~~~~l~-~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~ 300 (405)
T COG1252 226 VLLGTPVTEVTPDGVTLKD---GEE-EIPADTVVWAAGVRASPLLKDLS-GLETDRRGRLVVNPTLQVPGHPDIFAAGDC 300 (405)
T ss_pred EEcCCceEEECCCcEEEcc---CCe-eEecCEEEEcCCCcCChhhhhcC-hhhhccCCCEEeCCCcccCCCCCeEEEecc
Confidence 9999999999999999987 553 49999999999999998776641 122256799999999999999999999999
Q ss_pred ccccccchhhhHHHHhhhccccCCCCcchhhhHHHHHhhhccCchhHHHHhHhhhhhHHHHhhhccCCcccccccccHHH
Q 045826 374 ATINQRKVMEDISAIFSKADKNNTGKLNVKDLKEVVKDICERYPQVEIYLNKKQLKNINVLLKNAEEDPKKASMEFDIEK 453 (584)
Q Consensus 374 a~~~~~~~~~~~~~~~~~a~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (584)
+..+++
T Consensus 301 A~~~~~-------------------------------------------------------------------------- 306 (405)
T COG1252 301 AAVIDP-------------------------------------------------------------------------- 306 (405)
T ss_pred ccCCCC--------------------------------------------------------------------------
Confidence 986420
Q ss_pred HHHHhhhhcccCCCCCcchhhHHHHHHHHHHHHhhhhhcccCCCCCccccCCCCCCCCCCeeccccceeEeCCcceeecc
Q 045826 454 FKKALSEVDSQMKHLPATAQVAAQEGAYLANCFNRMEQCEKNPEGPLRFRGAGRHRFHPFRYKHFGQFAPLGGEEAAAQL 533 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~p~ta~~A~~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~G~~~~lG~~~av~~~ 533 (584)
+|+|++||+|+|||+|+|+||.+.+++ .+++||+|+++|+|++||.+.||+.
T Consensus 307 ------------~p~P~tAQ~A~Qqg~~~a~ni~~~l~g---------------~~l~~f~y~~~Gtl~~lG~~~av~~- 358 (405)
T COG1252 307 ------------RPVPPTAQAAHQQGEYAAKNIKARLKG---------------KPLKPFKYKDKGTLASLGDFSAVAD- 358 (405)
T ss_pred ------------CCCCChhHHHHHHHHHHHHHHHHHhcC---------------CCCCCCcccceEEEEEccCCceeEE-
Confidence 578999999999999999999887755 5789999999999999999999999
Q ss_pred cCCCceecchHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccCC
Q 045826 534 ELPFDWISVGRGSQWLWYSVYASKQISWRTRFLVISDWRRRFMFGRDS 581 (584)
Q Consensus 534 ~~~~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 581 (584)
+ +...+.|++||++|+.+|+..++.++++.++..+|++.++++++.
T Consensus 359 -~-g~~~l~G~~a~~~k~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 404 (405)
T COG1252 359 -L-GGVKLKGFLAWLLKRAAYLYYLLGIRSRLAVALYWLTTYLTGRRS 404 (405)
T ss_pred -e-cceeeccHHHHHHHHHHHHheecccCcHHHHHHHHhhhhhccccc
Confidence 7 457889999999999999999999999999999999999998865
No 3
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=1e-64 Score=541.48 Aligned_cols=416 Identities=45% Similarity=0.775 Sum_probs=363.1
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEE
Q 045826 54 EFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAEC 133 (584)
Q Consensus 54 ~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v 133 (584)
..++++|||||||+||+.+|..|...+++|||||+++++.|.|+++.+..|..+.+++..+++..+...+ ++|++++|
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~--~~~i~~~V 84 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLP--NRYLRAVV 84 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCC--eEEEEEEE
Confidence 3457899999999999999999987789999999999999999999999999888889999999888776 77999999
Q ss_pred EEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCC
Q 045826 134 YKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPN 213 (584)
Q Consensus 134 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 213 (584)
+.||++++.|.+..............+++||+||||||+.+..+++||..++++++++++++.++++.+.++++.+..++
T Consensus 85 ~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 164 (424)
T PTZ00318 85 YDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPT 164 (424)
T ss_pred EEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999998832110000000113799999999999999999999999999999999999999999998888777655
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcE
Q 045826 214 LSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGID 293 (584)
Q Consensus 214 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~ 293 (584)
.+.+..++.++|+|||||++|+|+|.+|+++.+....+.|+.+.++.+|+|+++++++++.+++.+.+.+++.|+++||+
T Consensus 165 ~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~ 244 (424)
T PTZ00318 165 TSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVD 244 (424)
T ss_pred CChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 55555666779999999999999999999988777777888877789999999999999999999999999999999999
Q ss_pred EEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cCCCceeeCCCCccCCCCCEEEeC
Q 045826 294 LKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--ANRRVLATDEWLRVEGCESVYALG 371 (584)
Q Consensus 294 v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiG 371 (584)
++++++|++++++.+++.+ |++ +++|++||++|++++++. +.+++ +++|+|.||++||++++|||||+|
T Consensus 245 v~~~~~v~~v~~~~v~~~~---g~~--i~~d~vi~~~G~~~~~~~----~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiG 315 (424)
T PTZ00318 245 IRTKTAVKEVLDKEVVLKD---GEV--IPTGLVVWSTGVGPGPLT----KQLKVDKTSRGRISVDDHLRVKPIPNVFALG 315 (424)
T ss_pred EEeCCeEEEEeCCEEEECC---CCE--EEccEEEEccCCCCcchh----hhcCCcccCCCcEEeCCCcccCCCCCEEEEe
Confidence 9999999999998888754 775 999999999998777543 34454 567999999999988999999999
Q ss_pred ccccccccchhhhHHHHhhhccccCCCCcchhhhHHHHHhhhccCchhHHHHhHhhhhhHHHHhhhccCCcccccccccH
Q 045826 372 DCATINQRKVMEDISAIFSKADKNNTGKLNVKDLKEVVKDICERYPQVEIYLNKKQLKNINVLLKNAEEDPKKASMEFDI 451 (584)
Q Consensus 372 D~a~~~~~~~~~~~~~~~~~a~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (584)
||+..+.
T Consensus 316 D~a~~~~------------------------------------------------------------------------- 322 (424)
T PTZ00318 316 DCAANEE------------------------------------------------------------------------- 322 (424)
T ss_pred ccccCCC-------------------------------------------------------------------------
Confidence 9997531
Q ss_pred HHHHHHhhhhcccCCCCCcchhhHHHHHHHHHHHHhhhhhcccCCCCCccccCCCCCCCCCCeeccccceeEeCCcceee
Q 045826 452 EKFKKALSEVDSQMKHLPATAQVAAQEGAYLANCFNRMEQCEKNPEGPLRFRGAGRHRFHPFRYKHFGQFAPLGGEEAAA 531 (584)
Q Consensus 452 ~~~~~~~~~~~~~~~~~p~ta~~A~~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~G~~~~lG~~~av~ 531 (584)
.++|++++.|++||.++|+||.+.+.++ .+.+||.|...|.+++||+++|++
T Consensus 323 --------------~~~~~~~~~A~~qg~~~A~ni~~~l~g~--------------~~~~~~~~~~~g~~~~lG~~~av~ 374 (424)
T PTZ00318 323 --------------RPLPTLAQVASQQGVYLAKEFNNELKGK--------------PMSKPFVYRSLGSLAYLGNYSAIV 374 (424)
T ss_pred --------------CCCCCchHHHHHHHHHHHHHHHHHhcCC--------------CCCCCCeecCCceEEEecCCceEE
Confidence 4679999999999999999998876542 246899999999999999999999
Q ss_pred cccCCCceecchHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccCCCCC
Q 045826 532 QLELPFDWISVGRGSQWLWYSVYASKQISWRTRFLVISDWRRRFMFGRDSSRI 584 (584)
Q Consensus 532 ~~~~~~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 584 (584)
+ ++ .+.+.|++||++|+++|+.++++|+++++++++|++.++|+|+++|+
T Consensus 375 ~--~~-~~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 424 (424)
T PTZ00318 375 Q--LG-AFDLSGFKALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424 (424)
T ss_pred E--cC-CceEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCccccC
Confidence 9 64 47889999999999999999999999999999999999999999874
No 4
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=3.9e-47 Score=399.27 Aligned_cols=355 Identities=23% Similarity=0.368 Sum_probs=296.4
Q ss_pred eEEEECCcHHHHHHHHhcc---cCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEE
Q 045826 59 KVVVLGTGWAGTTFLKILK---SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYK 135 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~---~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~ 135 (584)
+|||||||+||+.+|.+|+ ..+++|+|||+++++.|.+.++.+..+....+++..++++++++.+ ++|+.++|+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g--v~~~~~~v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAG--ARFVIAEATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcC--CEEEEEEEEE
Confidence 5999999999999999996 3578999999999999999888888888777788888899998887 6688999999
Q ss_pred EecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCC
Q 045826 136 IDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLS 215 (584)
Q Consensus 136 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~ 215 (584)
||+++++|.+.++. +++||+||||||+.+..|.+||..++++.+++++++.+.++.+.+.++..
T Consensus 79 id~~~~~V~~~~g~----------~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 142 (364)
T TIGR03169 79 IDPDRRKVLLANRP----------PLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP------ 142 (364)
T ss_pred EecccCEEEECCCC----------cccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcC------
Confidence 99999999887653 79999999999999999999998889999999999988777765543210
Q ss_pred HHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEE
Q 045826 216 DEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLK 295 (584)
Q Consensus 216 ~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~ 295 (584)
...++|+|||||++|+|+|.+|++..++ .....+|+++ ..+.+++.+++.+.+.+.+.|++.||+++
T Consensus 143 ----~~~~~vvVvG~G~~g~E~A~~l~~~~~~--------~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~ 209 (364)
T TIGR03169 143 ----PGTKRLAVVGGGAAGVEIALALRRRLPK--------RGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVH 209 (364)
T ss_pred ----CCCceEEEECCCHHHHHHHHHHHHHHHh--------cCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEE
Confidence 1245999999999999999999876421 0012589999 66788888999999999999999999999
Q ss_pred eCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cCCCceeeCCCCccCCCCCEEEeCcc
Q 045826 296 TGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--ANRRVLATDEWLRVEGCESVYALGDC 373 (584)
Q Consensus 296 ~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~ 373 (584)
+++++++++++.+++.+ |++ +++|.+|||+|.++++ ++...++ +.+|+|.||+++|++++|||||+|||
T Consensus 210 ~~~~v~~i~~~~v~~~~---g~~--i~~D~vi~a~G~~p~~----~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~ 280 (364)
T TIGR03169 210 EGAPVTRGPDGALILAD---GRT--LPADAILWATGARAPP----WLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDC 280 (364)
T ss_pred eCCeeEEEcCCeEEeCC---CCE--EecCEEEEccCCChhh----HHHHcCCCcCCCCeEEECCccccCCCCCEEEeeee
Confidence 99999999888776644 765 9999999999976554 3334454 56799999999999899999999999
Q ss_pred ccccccchhhhHHHHhhhccccCCCCcchhhhHHHHHhhhccCchhHHHHhHhhhhhHHHHhhhccCCcccccccccHHH
Q 045826 374 ATINQRKVMEDISAIFSKADKNNTGKLNVKDLKEVVKDICERYPQVEIYLNKKQLKNINVLLKNAEEDPKKASMEFDIEK 453 (584)
Q Consensus 374 a~~~~~~~~~~~~~~~~~a~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (584)
+..+.
T Consensus 281 ~~~~~--------------------------------------------------------------------------- 285 (364)
T TIGR03169 281 AVITD--------------------------------------------------------------------------- 285 (364)
T ss_pred eecCC---------------------------------------------------------------------------
Confidence 97531
Q ss_pred HHHHhhhhcccCCCCCcchhhHHHHHHHHHHHHhhhhhcccCCCCCccccCCCCCCCCCCee-ccccceeEeCCcceeec
Q 045826 454 FKKALSEVDSQMKHLPATAQVAAQEGAYLANCFNRMEQCEKNPEGPLRFRGAGRHRFHPFRY-KHFGQFAPLGGEEAAAQ 532 (584)
Q Consensus 454 ~~~~~~~~~~~~~~~p~ta~~A~~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~G~~~~lG~~~av~~ 532 (584)
.+.|++++.|++||+++|+||.+.+.+ +++++|++ ...|.++++|.+.||+.
T Consensus 286 ------------~~~~~~~~~A~~~g~~~a~ni~~~l~g---------------~~~~~~~~~~~~~~~~~~G~~~~v~~ 338 (364)
T TIGR03169 286 ------------APRPKAGVYAVRQAPILAANLRASLRG---------------QPLRPFRPQRDYLQLLNTGDRRAVAS 338 (364)
T ss_pred ------------CCCCCchHHHHHhHHHHHHHHHHHhcC---------------CCCCCCcccccceeEEEcCCCcEEEe
Confidence 356889999999999999999877654 35567875 46799999999999998
Q ss_pred ccCCCceecchHHHHHHHHHHHHHhc
Q 045826 533 LELPFDWISVGRGSQWLWYSVYASKQ 558 (584)
Q Consensus 533 ~~~~~~~~~~g~~a~~~~~~~~~~~~ 558 (584)
.+ .+.+.|+++|+++..+...++
T Consensus 339 --~~-~~~~~~~~~~~~k~~~~~~~~ 361 (364)
T TIGR03169 339 --WG-WIIGPGRWLWRLKDWIDRRFM 361 (364)
T ss_pred --ec-ceeecCccHHHHHHHHhHHHH
Confidence 54 578889999999988877665
No 5
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=5.2e-39 Score=344.82 Aligned_cols=274 Identities=19% Similarity=0.339 Sum_probs=219.3
Q ss_pred CCeEEEECCcHHHHHHHHhccc--CCCeEEEEcCCCCCCCCC-ccccccccccCccc-c-cHHHHHHHHHcCCcEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKS--NSFEVQVVSPRNYFAFTP-LLPSVTNGTVEARS-I-VEPIRNIVRKKGMDIQFKEA 131 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~--~g~~V~lid~~~~~~~~p-~~~~~~~g~~~~~~-i-~~~~~~~~~~~g~~v~~~~~ 131 (584)
|++|||||||+||+++|..|++ .+++|+|||+++++.|.+ .++.+..+.....+ . ....+.+.++.++++ +..+
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~~~~ 79 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITV-KTYH 79 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEE-EeCC
Confidence 4689999999999999999984 378999999999998885 56666655443322 1 112244456677554 3468
Q ss_pred EEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcC
Q 045826 132 ECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASL 211 (584)
Q Consensus 132 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~ 211 (584)
+|+.||+++++|.+.++.+ .+..++.||+||||||+.|+.|++++ ++++.++++.++..+++.+.+
T Consensus 80 ~V~~Id~~~~~v~~~~~~~-----~~~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~------- 145 (438)
T PRK13512 80 EVIAINDERQTVTVLNRKT-----NEQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA------- 145 (438)
T ss_pred EEEEEECCCCEEEEEECCC-----CcEEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhh-------
Confidence 9999999999999987531 12246899999999999998777653 566778888888887766532
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCC
Q 045826 212 PNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDG 291 (584)
Q Consensus 212 ~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~G 291 (584)
..+++++|||||++|+|+|..+.+++ .+|+++++.+++++.+++++.+.+.+.|++.|
T Consensus 146 --------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~g 203 (438)
T PRK13512 146 --------NQVDKALVVGAGYISLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDKRE 203 (438)
T ss_pred --------cCCCEEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecccccchhcCHHHHHHHHHHHHhcC
Confidence 12459999999999999999998764 79999999999999999999999999999999
Q ss_pred cEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cCCCceeeCCCCccCCCCCEEE
Q 045826 292 IDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--ANRRVLATDEWLRVEGCESVYA 369 (584)
Q Consensus 292 V~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~~g~i~Vd~~l~~~~~~~Vfa 369 (584)
|+++++++|++++.+.+++.+ |+. +++|.|+||+|. .|+. .+++..++ +++|+|.||+++|| ++|||||
T Consensus 204 I~i~~~~~v~~i~~~~v~~~~---g~~--~~~D~vl~a~G~--~pn~-~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA 274 (438)
T PRK13512 204 IPYRLNEEIDAINGNEVTFKS---GKV--EHYDMIIEGVGT--HPNS-KFIESSNIKLDDKGFIPVNDKFET-NVPNIYA 274 (438)
T ss_pred CEEEECCeEEEEeCCEEEECC---CCE--EEeCEEEECcCC--CcCh-HHHHhcCcccCCCCcEEECCCccc-CCCCEEE
Confidence 999999999999887776654 664 899999999995 4444 45666766 56789999999998 8999999
Q ss_pred eCccccc
Q 045826 370 LGDCATI 376 (584)
Q Consensus 370 iGD~a~~ 376 (584)
+|||+..
T Consensus 275 ~GD~~~~ 281 (438)
T PRK13512 275 IGDIITS 281 (438)
T ss_pred eeeeEEe
Confidence 9999864
No 6
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=5.5e-38 Score=333.04 Aligned_cols=271 Identities=19% Similarity=0.316 Sum_probs=210.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCC--eEEEEcCCCCCCCC-Cccc-cccccccCcccccHHHHHHHHHcCCcEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSF--EVQVVSPRNYFAFT-PLLP-SVTNGTVEARSIVEPIRNIVRKKGMDIQFKEA 131 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~--~V~lid~~~~~~~~-p~~~-~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~ 131 (584)
.+++|||||||+||++||..|++.+. +|+||++++++.|. |.++ .+..+.........+ .+.+...+ ++++.+
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--i~~~~g 78 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLP-ANWWQENN--VHLHSG 78 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCC-HHHHHHCC--CEEEcC
Confidence 35689999999999999999997665 79999999888773 4333 233332211111112 34455566 555544
Q ss_pred -EEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCc-ccccccccCHHHHHHHHHHHHHHHHHh
Q 045826 132 -ECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGV-VEHAHFLKEVEHAQRIRRSVIDCFERA 209 (584)
Q Consensus 132 -~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~-~~~~~~~~~~~~a~~~~~~l~~~~~~~ 209 (584)
.|..+|++++.|.+.++. .+.||+||||||+.|+.+++++. .++++.+++.+++.++++.+
T Consensus 79 ~~V~~id~~~~~v~~~~g~----------~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~------- 141 (396)
T PRK09754 79 VTIKTLGRDTRELVLTNGE----------SWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVL------- 141 (396)
T ss_pred CEEEEEECCCCEEEECCCC----------EEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHh-------
Confidence 799999999999886543 79999999999999987776654 35678888899988877653
Q ss_pred cCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccc-ccHHHHHHHHHHHH
Q 045826 210 SLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM-FDKRITASAEEKFK 288 (584)
Q Consensus 210 ~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-~~~~~~~~~~~~L~ 288 (584)
..+++++|||+|++|+|+|..|.+.+ .+|+++++.+++++. +++.+.+.+.+.++
T Consensus 142 ----------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~ 197 (396)
T PRK09754 142 ----------QPERSVVIVGAGTIGLELAASATQRR--------------CKVTVIELAATVMGRNAPPPVQRYLLQRHQ 197 (396)
T ss_pred ----------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCcchhhhcCHHHHHHHHHHHH
Confidence 23459999999999999999998754 799999999999875 68888999999999
Q ss_pred hCCcEEEeCCceeEEcCC-eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCCcCCCceeeCCCCccCCCCCE
Q 045826 289 RDGIDLKTGSMVVKLSDK-EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEWLRVEGCESV 367 (584)
Q Consensus 289 ~~GV~v~~~~~V~~v~~~-~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~~~g~i~Vd~~l~~~~~~~V 367 (584)
+.||+++++++|++++.+ .+.+. ..+|+. +++|.||+++|.. |+. .+++..++..+++|.||+++|| +.|||
T Consensus 198 ~~GV~i~~~~~V~~i~~~~~~~v~-l~~g~~--i~aD~Vv~a~G~~--pn~-~l~~~~gl~~~~gi~vd~~~~t-s~~~I 270 (396)
T PRK09754 198 QAGVRILLNNAIEHVVDGEKVELT-LQSGET--LQADVVIYGIGIS--AND-QLAREANLDTANGIVIDEACRT-CDPAI 270 (396)
T ss_pred HCCCEEEeCCeeEEEEcCCEEEEE-ECCCCE--EECCEEEECCCCC--hhh-HHHHhcCCCcCCCEEECCCCcc-CCCCE
Confidence 999999999999999754 34333 244765 9999999999954 444 4666778754567999999998 89999
Q ss_pred EEeCcccccc
Q 045826 368 YALGDCATIN 377 (584)
Q Consensus 368 faiGD~a~~~ 377 (584)
||+|||+..+
T Consensus 271 yA~GD~a~~~ 280 (396)
T PRK09754 271 FAGGDVAITR 280 (396)
T ss_pred EEccceEeee
Confidence 9999999753
No 7
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.5e-37 Score=335.15 Aligned_cols=278 Identities=26% Similarity=0.412 Sum_probs=215.6
Q ss_pred CeEEEECCcHHHHHHHHhcccC--CCeEEEEcCCCCCCCCC-ccccccccccC-cccccHHHHHHHHHcCCcEEEEEEEE
Q 045826 58 KKVVVLGTGWAGTTFLKILKSN--SFEVQVVSPRNYFAFTP-LLPSVTNGTVE-ARSIVEPIRNIVRKKGMDIQFKEAEC 133 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~--g~~V~lid~~~~~~~~p-~~~~~~~g~~~-~~~i~~~~~~~~~~~g~~v~~~~~~v 133 (584)
++|||||||+||+++|..|++. +.+|+|||+++++.|.+ .++....+... +.++.....+.+.+.++++ +.+++|
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~-~~~~~V 79 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDV-KTEHEV 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeE-EecCEE
Confidence 3799999999999999999864 46999999999988865 34444444322 2233444456677777543 347899
Q ss_pred EEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcc-cccccccCHHHHHHHHHHHHHHHHHhcCC
Q 045826 134 YKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVV-EHAHFLKEVEHAQRIRRSVIDCFERASLP 212 (584)
Q Consensus 134 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 212 (584)
+.||++++.|.+.+.. +.....+.||+||+|||++|+.|++||++ ++++.+++..++.++++.+.+
T Consensus 80 ~~id~~~~~v~~~~~~-----~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~-------- 146 (444)
T PRK09564 80 VKVDAKNKTITVKNLK-----TGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKD-------- 146 (444)
T ss_pred EEEECCCCEEEEEECC-----CCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh--------
Confidence 9999999999987521 11112344999999999999999999986 567778888888877766532
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc-cccHHHHHHHHHHHHhCC
Q 045826 213 NLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN-MFDKRITASAEEKFKRDG 291 (584)
Q Consensus 213 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~-~~~~~~~~~~~~~L~~~G 291 (584)
..+++|+|||+|++|+|+|..+.+.+ .+|+++++.+++++ .+++++.+.+.+.|++.|
T Consensus 147 -------~~~~~vvVvGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~g 205 (444)
T PRK09564 147 -------EEIKNIVIIGAGFIGLEAVEAAKHLG--------------KNVRIIQLEDRILPDSFDKEITDVMEEELRENG 205 (444)
T ss_pred -------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEeCCcccCchhcCHHHHHHHHHHHHHCC
Confidence 23459999999999999999988754 78999999999887 589999999999999999
Q ss_pred cEEEeCCceeEEcCCe-EEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cCCCceeeCCCCccCCCCCEE
Q 045826 292 IDLKTGSMVVKLSDKE-ISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--ANRRVLATDEWLRVEGCESVY 368 (584)
Q Consensus 292 V~v~~~~~V~~v~~~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~~g~i~Vd~~l~~~~~~~Vf 368 (584)
|+++++++|+++++++ +.....+ +.+ +++|.+|+|+|.. |+. .++++.++ +.+|+|.||+++|| +.||||
T Consensus 206 I~v~~~~~v~~i~~~~~~~~v~~~-~~~--i~~d~vi~a~G~~--p~~-~~l~~~gl~~~~~g~i~vd~~~~t-~~~~Iy 278 (444)
T PRK09564 206 VELHLNEFVKSLIGEDKVEGVVTD-KGE--YEADVVIVATGVK--PNT-EFLEDTGLKTLKNGAIIVDEYGET-SIENIY 278 (444)
T ss_pred CEEEcCCEEEEEecCCcEEEEEeC-CCE--EEcCEEEECcCCC--cCH-HHHHhcCccccCCCCEEECCCccc-CCCCEE
Confidence 9999999999996543 3222222 333 9999999999954 444 45677776 46789999999998 899999
Q ss_pred EeCcccccc
Q 045826 369 ALGDCATIN 377 (584)
Q Consensus 369 aiGD~a~~~ 377 (584)
|+|||+..+
T Consensus 279 A~GD~~~~~ 287 (444)
T PRK09564 279 AAGDCATIY 287 (444)
T ss_pred EeeeEEEEE
Confidence 999999753
No 8
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=6e-37 Score=323.20 Aligned_cols=269 Identities=22% Similarity=0.366 Sum_probs=213.5
Q ss_pred CCeEEEECCcHHHHHHHHhccc--CCCeEEEEcCCCCCCC-CCccccccccccCcccccH-HHHHHHHHcCCcEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKS--NSFEVQVVSPRNYFAF-TPLLPSVTNGTVEARSIVE-PIRNIVRKKGMDIQFKEAE 132 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~--~g~~V~lid~~~~~~~-~p~~~~~~~g~~~~~~i~~-~~~~~~~~~g~~v~~~~~~ 132 (584)
+++|||||||+||+++|..|++ ++.+||||++++++.| .|.++....+...+.++.. ...+++++.++++ +.+++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~-~~~~~ 80 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRL-FPHTW 80 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEE-ECCCE
Confidence 4689999999999999999984 4678999999997666 5666666666555555544 3566777787443 23678
Q ss_pred EEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCC
Q 045826 133 CYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLP 212 (584)
Q Consensus 133 v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 212 (584)
|+.||++++.+.+. + ..+.||+||||||+.|..|++||.+. ++.++++.++..++..+
T Consensus 81 V~~id~~~~~v~~~-~----------~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~---------- 138 (377)
T PRK04965 81 VTDIDAEAQVVKSQ-G----------NQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL---------- 138 (377)
T ss_pred EEEEECCCCEEEEC-C----------eEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh----------
Confidence 99999999888753 2 27999999999999999999999754 67778887776665443
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccc-ccHHHHHHHHHHHHhCC
Q 045826 213 NLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM-FDKRITASAEEKFKRDG 291 (584)
Q Consensus 213 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-~~~~~~~~~~~~L~~~G 291 (584)
..+++++|||+|++|+|+|..|.+.+ .+|+++++.+++++. +++.+.+.+.+.|++.|
T Consensus 139 -------~~~~~vvViGgG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~g 197 (377)
T PRK04965 139 -------RDAQRVLVVGGGLIGTELAMDLCRAG--------------KAVTLVDNAASLLASLMPPEVSSRLQHRLTEMG 197 (377)
T ss_pred -------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCcccchhCCHHHHHHHHHHHHhCC
Confidence 23459999999999999999998754 799999999999876 58889999999999999
Q ss_pred cEEEeCCceeEEcCC--eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCCcCCCceeeCCCCccCCCCCEEE
Q 045826 292 IDLKTGSMVVKLSDK--EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEWLRVEGCESVYA 369 (584)
Q Consensus 292 V~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~~~g~i~Vd~~l~~~~~~~Vfa 369 (584)
|+++++++|++++.+ .+.+.. .+|++ +++|.||+|+|..++. .+++..++..++.|.||+++|| +.|||||
T Consensus 198 V~i~~~~~v~~i~~~~~~~~v~~-~~g~~--i~~D~vI~a~G~~p~~---~l~~~~gl~~~~gi~vd~~l~t-s~~~VyA 270 (377)
T PRK04965 198 VHLLLKSQLQGLEKTDSGIRATL-DSGRS--IEVDAVIAAAGLRPNT---ALARRAGLAVNRGIVVDSYLQT-SAPDIYA 270 (377)
T ss_pred CEEEECCeEEEEEccCCEEEEEE-cCCcE--EECCEEEECcCCCcch---HHHHHCCCCcCCCEEECCCccc-CCCCEEE
Confidence 999999999999754 333332 34765 9999999999965543 4666777733334999999998 8999999
Q ss_pred eCccccc
Q 045826 370 LGDCATI 376 (584)
Q Consensus 370 iGD~a~~ 376 (584)
+|||+..
T Consensus 271 ~GD~a~~ 277 (377)
T PRK04965 271 LGDCAEI 277 (377)
T ss_pred eeecEeE
Confidence 9999975
No 9
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2.1e-36 Score=343.69 Aligned_cols=270 Identities=21% Similarity=0.340 Sum_probs=219.0
Q ss_pred CCeEEEECCcHHHHHHHHhccc----CCCeEEEEcCCCCCCCCCc-cccccccccCcccccHHHHHHHHHcCCcEEEEE-
Q 045826 57 KKKVVVLGTGWAGTTFLKILKS----NSFEVQVVSPRNYFAFTPL-LPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKE- 130 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~----~g~~V~lid~~~~~~~~p~-~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~- 130 (584)
+++|||||+|+||+.+|..|++ .+++||||++++++.|.+. ++....+. ..+++.....+++.+.+ ++++.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l~~~~~~~~~~~g--I~~~~g 79 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEELSLVREGFYEKHG--IKVLVG 79 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHccCCCHHHHHhCC--CEEEcC
Confidence 4589999999999999999963 4689999999999888653 44444443 34455555667778887 45555
Q ss_pred EEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCccc-ccccccCHHHHHHHHHHHHHHHHHh
Q 045826 131 AECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVE-HAHFLKEVEHAQRIRRSVIDCFERA 209 (584)
Q Consensus 131 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~-~~~~~~~~~~a~~~~~~l~~~~~~~ 209 (584)
..|+.||++.+.|.+.++. .+.||+||||||+.|..|++||.+. +++.+++++++.+++..+
T Consensus 80 ~~V~~Id~~~~~V~~~~G~----------~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~------- 142 (847)
T PRK14989 80 ERAITINRQEKVIHSSAGR----------TVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACA------- 142 (847)
T ss_pred CEEEEEeCCCcEEEECCCc----------EEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHH-------
Confidence 4699999999888876543 7999999999999999999999864 467788999988876553
Q ss_pred cCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc-cccHHHHHHHHHHHH
Q 045826 210 SLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN-MFDKRITASAEEKFK 288 (584)
Q Consensus 210 ~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~-~~~~~~~~~~~~~L~ 288 (584)
..+++++|||||++|+|+|..|.+++ .+|+++++.+++++ .+++...+.+.+.|+
T Consensus 143 ----------~~~k~vvVIGgG~iGlE~A~~L~~~G--------------~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~ 198 (847)
T PRK14989 143 ----------RRSKRGAVVGGGLLGLEAAGALKNLG--------------VETHVIEFAPMLMAEQLDQMGGEQLRRKIE 198 (847)
T ss_pred ----------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeccccchhhhcCHHHHHHHHHHHH
Confidence 23459999999999999999999865 79999999999998 589999999999999
Q ss_pred hCCcEEEeCCceeEEcCC---eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cCCCceeeCCCCccCC
Q 045826 289 RDGIDLKTGSMVVKLSDK---EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--ANRRVLATDEWLRVEG 363 (584)
Q Consensus 289 ~~GV~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~~g~i~Vd~~l~~~~ 363 (584)
++||++++++.++++.++ .+......+|++ +++|+||||+|++++. .+++..++ +.+|+|.||+++|| +
T Consensus 199 ~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~--i~~D~Vv~A~G~rPn~---~L~~~~Gl~~~~~G~I~VD~~l~T-s 272 (847)
T PRK14989 199 SMGVRVHTSKNTLEIVQEGVEARKTMRFADGSE--LEVDFIVFSTGIRPQD---KLATQCGLAVAPRGGIVINDSCQT-S 272 (847)
T ss_pred HCCCEEEcCCeEEEEEecCCCceEEEEECCCCE--EEcCEEEECCCcccCc---hHHhhcCccCCCCCcEEECCCCcC-C
Confidence 999999999999999643 122112234775 9999999999965554 46667776 56789999999999 8
Q ss_pred CCCEEEeCccccc
Q 045826 364 CESVYALGDCATI 376 (584)
Q Consensus 364 ~~~VfaiGD~a~~ 376 (584)
.|||||+|||+..
T Consensus 273 ~p~IYAiGD~a~~ 285 (847)
T PRK14989 273 DPDIYAIGECASW 285 (847)
T ss_pred CCCEEEeecceeE
Confidence 9999999999975
No 10
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.1e-35 Score=338.48 Aligned_cols=268 Identities=19% Similarity=0.363 Sum_probs=221.4
Q ss_pred EEEECCcHHHHHHHHhccc---CCCeEEEEcCCCCCCCC-CccccccccccCcccccHHHHHHHHHcCCcEEEEE-EEEE
Q 045826 60 VVVLGTGWAGTTFLKILKS---NSFEVQVVSPRNYFAFT-PLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKE-AECY 134 (584)
Q Consensus 60 VVIVGgG~AGl~aA~~L~~---~g~~V~lid~~~~~~~~-p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~-~~v~ 134 (584)
|||||||+||+++|..|++ .+++|||||+++++.|. +.++.+..|....+++..+..+++++.+ ++++. .+|+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~g--v~~~~g~~V~ 78 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHG--ITLYTGETVI 78 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCC--CEEEcCCeEE
Confidence 6999999999999998873 46899999999998876 4466777777666777777788888887 44554 5899
Q ss_pred EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcc-cccccccCHHHHHHHHHHHHHHHHHhcCCC
Q 045826 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVV-EHAHFLKEVEHAQRIRRSVIDCFERASLPN 213 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 213 (584)
.||++++.|.+.++. ++.||+||||||+.|+.|++||.+ ++++.+++++++..+++.+
T Consensus 79 ~Id~~~k~V~~~~g~----------~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~----------- 137 (785)
T TIGR02374 79 QIDTDQKQVITDAGR----------TLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMA----------- 137 (785)
T ss_pred EEECCCCEEEECCCc----------EeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHh-----------
Confidence 999999999887653 899999999999999999999986 4577888999988877643
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccc-ccHHHHHHHHHHHHhCCc
Q 045826 214 LSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM-FDKRITASAEEKFKRDGI 292 (584)
Q Consensus 214 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-~~~~~~~~~~~~L~~~GV 292 (584)
..+++++|||||++|+|+|..|.+.+ .+|+++++.+++++. +++...+.+.+.|+++||
T Consensus 138 ------~~~k~vvVVGgG~~GlE~A~~L~~~G--------------~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV 197 (785)
T TIGR02374 138 ------QRFKKAAVIGGGLLGLEAAVGLQNLG--------------MDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGL 197 (785)
T ss_pred ------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCC
Confidence 23459999999999999999999865 799999999999874 899999999999999999
Q ss_pred EEEeCCceeEEcCCe-EEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCCcCCCceeeCCCCccCCCCCEEEeC
Q 045826 293 DLKTGSMVVKLSDKE-ISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEWLRVEGCESVYALG 371 (584)
Q Consensus 293 ~v~~~~~V~~v~~~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~~~g~i~Vd~~l~~~~~~~VfaiG 371 (584)
++++++.++++..++ +......+|+. +++|+|||++|++++. .+.+..++..+|.|.||+++|| +.|||||+|
T Consensus 198 ~v~~~~~v~~i~~~~~~~~v~~~dG~~--i~~D~Vi~a~G~~Pn~---~la~~~gl~~~ggI~Vd~~~~T-s~p~IyA~G 271 (785)
T TIGR02374 198 TFLLEKDTVEIVGATKADRIRFKDGSS--LEADLIVMAAGIRPND---ELAVSAGIKVNRGIIVNDSMQT-SDPDIYAVG 271 (785)
T ss_pred EEEeCCceEEEEcCCceEEEEECCCCE--EEcCEEEECCCCCcCc---HHHHhcCCccCCCEEECCCccc-CCCCEEEee
Confidence 999999999996543 21111234775 9999999999976654 4666777754477999999998 899999999
Q ss_pred ccccc
Q 045826 372 DCATI 376 (584)
Q Consensus 372 D~a~~ 376 (584)
||+..
T Consensus 272 D~a~~ 276 (785)
T TIGR02374 272 ECAEH 276 (785)
T ss_pred eccee
Confidence 99975
No 11
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=8.5e-36 Score=314.52 Aligned_cols=268 Identities=22% Similarity=0.348 Sum_probs=204.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc---------------------------cCc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT---------------------------VEA 108 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~---------------------------~~~ 108 (584)
..+|+||||+|+||..+|.++++.|.+|.|||+...++++.+...+.+.+ ++.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 46899999999999999999999999999999997777765443322211 111
Q ss_pred ccc-----------cHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 109 RSI-----------VEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 109 ~~i-----------~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
.++ ...+..+++..+ ++++.++...+| .++|.+.... ...+.++++|||||++|..|
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~--V~vi~G~a~f~~--~~~v~V~~~~--------~~~~~a~~iiIATGS~p~~~ 150 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNG--VDVIRGEARFVD--PHTVEVTGED--------KETITADNIIIATGSRPRIP 150 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCC--CEEEEEEEEECC--CCEEEEcCCC--------ceEEEeCEEEEcCCCCCcCC
Confidence 111 112344555555 778999999998 4477766531 23999999999999999999
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCC
Q 045826 178 NTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLK 257 (584)
Q Consensus 178 ~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~ 257 (584)
++||+++..+ +.+ +++. .+.++ .++++|||||++|+|+|..+++++
T Consensus 151 ~~~~~~~~~~-~~s-~~~l-------------~~~~l-------P~~lvIiGgG~IGlE~a~~~~~LG------------ 196 (454)
T COG1249 151 PGPGIDGARI-LDS-SDAL-------------FLLEL-------PKSLVIVGGGYIGLEFASVFAALG------------ 196 (454)
T ss_pred CCCCCCCCeE-Eec-hhhc-------------ccccC-------CCEEEEECCCHHHHHHHHHHHHcC------------
Confidence 9998864321 111 1110 11112 339999999999999999999987
Q ss_pred CCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCCe--EEEEeCCCCeEEEEecceEEEccCCCCC
Q 045826 258 EFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKE--ISTKDRATGQISSIPYGMVVWSTGIGTR 335 (584)
Q Consensus 258 ~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 335 (584)
++||++++.+++||.+|+++++.+.+.|++.|+++++++++++++.+. +.+.. .+|+..++++|.+++|+| +.
T Consensus 197 --~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~-~~g~~~~~~ad~vLvAiG--R~ 271 (454)
T COG1249 197 --SKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTL-EDGEGGTIEADAVLVAIG--RK 271 (454)
T ss_pred --CcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEE-ecCCCCEEEeeEEEEccC--Cc
Confidence 899999999999999999999999999999999999999999996532 33332 224322489999999999 88
Q ss_pred chHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 336 PVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 336 p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
|+++.| +++.|+ +.+|+|.||.+++| +.|||||+|||+.
T Consensus 272 Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~ 313 (454)
T COG1249 272 PNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIG 313 (454)
T ss_pred cCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCC
Confidence 888877 888888 67799999955555 8999999999975
No 12
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=8e-35 Score=315.27 Aligned_cols=269 Identities=23% Similarity=0.368 Sum_probs=194.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc--------------------------cCcc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT--------------------------VEAR 109 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~--------------------------~~~~ 109 (584)
..+||||||||+||+++|..|++.|++|+|||++. +++......+.+.+ .+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 35899999999999999999999999999999986 66654333222111 1111
Q ss_pred cccH-----------HHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 110 SIVE-----------PIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 110 ~i~~-----------~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
.+.. .++..+++.+ ++++.+++..+|++...+...++ ...+.||+||||||++|..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~g~~~~~~~~~~~v~~~~~---------~~~~~~d~lViAtGs~p~~~- 149 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNK--VDIIRGEAKLVDPNTVRVMTEDG---------EQTYTAKNIILATGSRPREL- 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccCCEEEEecCCC---------cEEEEeCEEEEeCCCCCCCC-
Confidence 1111 2344555666 67889999998876444432111 13799999999999998653
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCC
Q 045826 179 TPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKE 258 (584)
Q Consensus 179 ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~ 258 (584)
||+......+.+..++..+. ...++++|||||++|+|+|..+.+.+
T Consensus 150 -pg~~~~~~~v~~~~~~~~~~--------------------~~~~~vvVvGgG~~g~E~A~~l~~~g------------- 195 (462)
T PRK06416 150 -PGIEIDGRVIWTSDEALNLD--------------------EVPKSLVVIGGGYIGVEFASAYASLG------------- 195 (462)
T ss_pred -CCCCCCCCeEEcchHhhCcc--------------------ccCCeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 56542222233333332211 12359999999999999999998754
Q ss_pred CcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCC--eEEEEeCCCCeEEEEecceEEEccCCCCCc
Q 045826 259 FTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDK--EISTKDRATGQISSIPYGMVVWSTGIGTRP 336 (584)
Q Consensus 259 ~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p 336 (584)
.+|+++++.++++|.+++++.+.+.+.|++.||+++++++|++++.+ ++.+...++|+..++++|.||||+|.+ |
T Consensus 196 -~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~--p 272 (462)
T PRK06416 196 -AEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRR--P 272 (462)
T ss_pred -CeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCc--c
Confidence 79999999999999999999999999999999999999999999643 454443222433459999999999954 4
Q ss_pred hHHHH-HHHhCC-cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 337 VIMDF-MKQIGQ-ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 337 ~~~~l-~~~~~l-~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
+...+ +++.++ .++|+|.||+++|+ +.|+|||+|||+.
T Consensus 273 ~~~~l~l~~~gl~~~~g~i~vd~~~~t-~~~~VyAiGD~~~ 312 (462)
T PRK06416 273 NTENLGLEELGVKTDRGFIEVDEQLRT-NVPNIYAIGDIVG 312 (462)
T ss_pred CCCCCCchhcCCeecCCEEeECCCCcc-CCCCEEEeeecCC
Confidence 44333 355666 23789999999997 8999999999984
No 13
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=9e-35 Score=312.90 Aligned_cols=261 Identities=19% Similarity=0.325 Sum_probs=195.9
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc--------------------------cCc--
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT--------------------------VEA-- 108 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~--------------------------~~~-- 108 (584)
.+||+||||||||++||..+++.|++|+|||+. .++++.....+.+.+ ++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 479999999999999999999999999999985 566654432222111 010
Q ss_pred ---------ccccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCC
Q 045826 109 ---------RSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179 (584)
Q Consensus 109 ---------~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~i 179 (584)
..+...++..+++.+ ++++.+++..++++ ++.+.... ..+.||+||||||+.|..|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~g--V~~~~g~~~~v~~~--~v~v~~~g---------~~~~~d~lIiATGs~p~~p~i 147 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAG--VELLEGRARLVGPN--TVEVLQDG---------TTYTAKKILIAVGGRPQKPNL 147 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--cEEEEEEEEEecCC--EEEEecCC---------eEEEcCEEEEecCCcCCCCCC
Confidence 012223455566666 66889999999876 44432211 279999999999999999999
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCC
Q 045826 180 PGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEF 259 (584)
Q Consensus 180 pG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~ 259 (584)
||.+. .. +..++..+ + ...++++|||+|++|+|+|..+..++
T Consensus 148 ~G~~~-~~---~~~~~~~l-------------~-------~~~~~vvVIGgG~~g~E~A~~l~~~G-------------- 189 (446)
T TIGR01424 148 PGHEL-GI---TSNEAFHL-------------P-------TLPKSILILGGGYIAVEFAGIWRGLG-------------- 189 (446)
T ss_pred CCccc-ee---chHHhhcc-------------c-------ccCCeEEEECCcHHHHHHHHHHHHcC--------------
Confidence 98632 11 22222111 1 12459999999999999999998764
Q ss_pred cEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCCCCch
Q 045826 260 TRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIGTRPV 337 (584)
Q Consensus 260 ~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~ 337 (584)
.+|+++++.+.+++.+++++.+.+.+.|++.||+++++++|++++. +++.+.. .+|+. +++|.||||+|. .|+
T Consensus 190 ~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~-~~g~~--i~~D~viva~G~--~pn 264 (446)
T TIGR01424 190 VQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTL-SHGEE--IVADVVLFATGR--SPN 264 (446)
T ss_pred CeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEE-cCCcE--eecCEEEEeeCC--CcC
Confidence 7999999999999999999999999999999999999999999963 4444433 23654 999999999995 454
Q ss_pred HHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 338 IMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 338 ~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
+..+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 265 ~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~ 304 (446)
T TIGR01424 265 TKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTD 304 (446)
T ss_pred CCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCC
Confidence 4333 455565 56789999999999 8999999999985
No 14
>PLN02507 glutathione reductase
Probab=100.00 E-value=2.8e-34 Score=311.89 Aligned_cols=267 Identities=19% Similarity=0.287 Sum_probs=199.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcC---------CCCCCCCCccccccccc--------------------
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSP---------RNYFAFTPLLPSVTNGT-------------------- 105 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~---------~~~~~~~p~~~~~~~g~-------------------- 105 (584)
...+||+|||||+||+.+|..+++.|.+|+|||+ ...++++.+...+.+.+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 3458999999999999999999999999999996 24466654332221100
Q ss_pred -------cCcccccH-----------HHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEE
Q 045826 106 -------VEARSIVE-----------PIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILV 167 (584)
Q Consensus 106 -------~~~~~i~~-----------~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LV 167 (584)
++...+.. .++.++...+ ++++++++..+|++...|.+.++. ...+.||+||
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~g--V~~i~g~a~~vd~~~v~V~~~~g~--------~~~~~~d~LI 172 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAG--VKLYEGEGKIVGPNEVEVTQLDGT--------KLRYTAKHIL 172 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEEEEEEecCCEEEEEeCCCc--------EEEEEcCEEE
Confidence 11111111 1223444455 778999999999886666544332 2368999999
Q ss_pred EccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHH
Q 045826 168 IAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVID 247 (584)
Q Consensus 168 lAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~ 247 (584)
||||++|..|++||.+. . .+.+++..+. ...++++|||+|++|+|+|..+..++
T Consensus 173 IATGs~p~~p~ipG~~~-~---~~~~~~~~l~--------------------~~~k~vvVIGgG~ig~E~A~~l~~~G-- 226 (499)
T PLN02507 173 IATGSRAQRPNIPGKEL-A---ITSDEALSLE--------------------ELPKRAVVLGGGYIAVEFASIWRGMG-- 226 (499)
T ss_pred EecCCCCCCCCCCCccc-e---echHHhhhhh--------------------hcCCeEEEECCcHHHHHHHHHHHHcC--
Confidence 99999999999998632 1 1233332211 12359999999999999999998765
Q ss_pred hHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecce
Q 045826 248 DLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGM 325 (584)
Q Consensus 248 ~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~ 325 (584)
.+|+|+++.+++++.+++++.+.+.+.|++.||+++++++|++++. +++.+.. .+|++ +++|.
T Consensus 227 ------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~-~~g~~--i~~D~ 291 (499)
T PLN02507 227 ------------ATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVIT-DHGEE--FVADV 291 (499)
T ss_pred ------------CeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEE-CCCcE--EEcCE
Confidence 7999999999999999999999999999999999999999999963 4555543 34654 99999
Q ss_pred EEEccCCCCCchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 326 VVWSTGIGTRPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 326 vI~a~G~~~~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
|+|++|.+ |+...+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 292 vl~a~G~~--pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~ 341 (499)
T PLN02507 292 VLFATGRA--PNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTN 341 (499)
T ss_pred EEEeecCC--CCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCC
Confidence 99999954 444333 456665 56789999999998 9999999999985
No 15
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.5e-34 Score=308.37 Aligned_cols=269 Identities=16% Similarity=0.227 Sum_probs=194.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc--------------------------cCcc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT--------------------------VEAR 109 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~--------------------------~~~~ 109 (584)
.++||||||||+||+++|..|++.|.+|+|||+++.++++.+...+.+.+ .+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 36899999999999999999999999999999987777754433222111 1111
Q ss_pred cccHH-----------HHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCC-C
Q 045826 110 SIVEP-----------IRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANT-F 177 (584)
Q Consensus 110 ~i~~~-----------~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~-~ 177 (584)
.+... +..+++..+ ++++++++..+|. +++.+....+ +..++.||+||||||++|.. |
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~g--V~~~~g~a~~~~~--~~v~v~~~~g------~~~~~~~d~lViATGs~p~~~p 152 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRK--VTVVNGLGKFTGG--NTLEVTGEDG------KTTVIEFDNAIIAAGSRPIQLP 152 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccC--CEEEEecCCC------ceEEEEcCEEEEeCCCCCCCCC
Confidence 11111 223345556 7788999888875 4555543211 12379999999999999974 4
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCC
Q 045826 178 NTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLK 257 (584)
Q Consensus 178 ~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~ 257 (584)
.+++..+++ .+..++..+. ..+++++|||||++|+|+|..+.+++
T Consensus 153 ~~~~~~~~v---~~~~~~~~~~--------------------~~~~~vvIiGgG~iG~E~A~~l~~~G------------ 197 (471)
T PRK06467 153 FIPHDDPRI---WDSTDALELK--------------------EVPKRLLVMGGGIIGLEMGTVYHRLG------------ 197 (471)
T ss_pred CCCCCCCcE---EChHHhhccc--------------------cCCCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 556533332 2223322211 12359999999999999999998765
Q ss_pred CCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeC-CCCeEEEEecceEEEccCCCC
Q 045826 258 EFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDR-ATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 258 ~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~-~~G~~~~i~~D~vI~a~G~~~ 334 (584)
.+|+++++.+++++.+++++.+.+.+.|++. |++++++.|++++ ++++.+... .+|+..++++|.|||++|.
T Consensus 198 --~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-- 272 (471)
T PRK06467 198 --SEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR-- 272 (471)
T ss_pred --CCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc--
Confidence 7999999999999999999999999999998 9999999999986 345444321 1232335999999999995
Q ss_pred CchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 335 RPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 335 ~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.|++..+ ++..++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 273 ~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~ 315 (471)
T PRK06467 273 VPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVG 315 (471)
T ss_pred cccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcC
Confidence 4544333 455565 67899999999998 8999999999985
No 16
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.1e-34 Score=310.14 Aligned_cols=272 Identities=20% Similarity=0.295 Sum_probs=194.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc--------------------------cCcc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT--------------------------VEAR 109 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~--------------------------~~~~ 109 (584)
..+||||||||+||+++|.+|++.|.+|+|||+. .++++.....+.+.+ .+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 3689999999999999999999999999999986 566654333221111 0100
Q ss_pred cc-----------cHHHHHHHHHcCCcEEEEEEEEEEEecC-----CCEEEEeecCccCCCCCceEEEeCCEEEEccCCC
Q 045826 110 SI-----------VEPIRNIVRKKGMDIQFKEAECYKIDAE-----KKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ 173 (584)
Q Consensus 110 ~i-----------~~~~~~~~~~~g~~v~~~~~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~ 173 (584)
.+ ...+..++++.+ ++++.++++.+|++ .+++.+....+ +...+.||+||||||++
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~g--v~~~~g~a~~i~~~~~~~~~~~~~v~~~~g------~~~~~~~d~lViATGs~ 153 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGK--IDVFHGIGRILGPSIFSPMPGTVSVETETG------ENEMIIPENLLIATGSR 153 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEeCCCCCcCCceEEEEEeCCC------ceEEEEcCEEEEeCCCC
Confidence 11 111234455556 77899999999987 33444433211 01379999999999999
Q ss_pred CCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhC
Q 045826 174 ANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLY 253 (584)
Q Consensus 174 ~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~ 253 (584)
|..+ ||.......+.+..++..+ . ...++++|||||++|+|+|..+++++
T Consensus 154 p~~~--p~~~~~~~~~~~~~~~~~~-------------~-------~~~~~vvIIGgG~~G~E~A~~l~~~g-------- 203 (472)
T PRK05976 154 PVEL--PGLPFDGEYVISSDEALSL-------------E-------TLPKSLVIVGGGVIGLEWASMLADFG-------- 203 (472)
T ss_pred CCCC--CCCCCCCceEEcchHhhCc-------------c-------ccCCEEEEECCCHHHHHHHHHHHHcC--------
Confidence 8654 3322111112222322211 0 12359999999999999999998864
Q ss_pred cCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc---CCeEEEEeCCCCeEEEEecceEEEcc
Q 045826 254 PSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS---DKEISTKDRATGQISSIPYGMVVWST 330 (584)
Q Consensus 254 ~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~---~~~v~~~~~~~G~~~~i~~D~vI~a~ 330 (584)
.+|+|+++.++++|.+++++.+.+.+.|++.||+++++++|++++ ++++......+|+..++++|.||||+
T Consensus 204 ------~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 204 ------VEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred ------CeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 799999999999999999999999999999999999999999996 45554433334654469999999999
Q ss_pred CCCCCchHHHH-HHHhCC-cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 331 GIGTRPVIMDF-MKQIGQ-ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 331 G~~~~p~~~~l-~~~~~l-~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
|.+ |++..+ ++..++ ..+|+|.||+++++ +.|+|||+|||+.
T Consensus 278 G~~--p~~~~l~l~~~~~~~~~g~i~Vd~~l~t-s~~~IyAiGD~~~ 321 (472)
T PRK05976 278 GRR--PNTEGIGLENTDIDVEGGFIQIDDFCQT-KERHIYAIGDVIG 321 (472)
T ss_pred CCc--cCCCCCCchhcCceecCCEEEECCCccc-CCCCEEEeeecCC
Confidence 954 444333 345555 35688999999998 7899999999974
No 17
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=9.3e-34 Score=306.98 Aligned_cols=268 Identities=17% Similarity=0.259 Sum_probs=197.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc--------------------------cCcc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT--------------------------VEAR 109 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~--------------------------~~~~ 109 (584)
.++||+|||||+||+++|..|++.|.+|+|||+++.+++......+.+.+ .+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 45899999999999999999999999999999987777654332221110 0011
Q ss_pred ccc-----------HHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 110 SIV-----------EPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 110 ~i~-----------~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
.+. ..+...+.+.+ ++++.+++..++.....|...++. ...+.||+||||||+.|..|+
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~~~~v~~~~g~--------~~~~~~d~lviATGs~p~~p~ 153 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNR--VDLIQGRARFVDPHTVEVECPDGE--------VETLTADKIVIATGSRPYRPP 153 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC--CEEEEEEEEEecCCEEEEEeCCCc--------eEEEEcCEEEEcCCCCCCCCC
Confidence 111 12334455566 668889998888764344332221 237999999999999998887
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCC
Q 045826 179 TPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKE 258 (584)
Q Consensus 179 ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~ 258 (584)
+++.... .+.+..+...+ ...+++++|||+|++|+|+|..+++++
T Consensus 154 ~~~~~~~--~v~~~~~~~~~--------------------~~~~~~v~IiGgG~~g~E~A~~l~~~g------------- 198 (461)
T PRK05249 154 DVDFDHP--RIYDSDSILSL--------------------DHLPRSLIIYGAGVIGCEYASIFAALG------------- 198 (461)
T ss_pred CCCCCCC--eEEcHHHhhch--------------------hhcCCeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 7765321 11222211110 012459999999999999999999865
Q ss_pred CcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCCCCc
Q 045826 259 FTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIGTRP 336 (584)
Q Consensus 259 ~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p 336 (584)
.+|+++++.+++++.+++++.+.+.+.|++.||+++++++|++++ ++++.+.. .+|+. +++|.||+|+|. .|
T Consensus 199 -~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~g~~--i~~D~vi~a~G~--~p 272 (461)
T PRK05249 199 -VKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHL-KSGKK--IKADCLLYANGR--TG 272 (461)
T ss_pred -CeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEE-CCCCE--EEeCEEEEeecC--Cc
Confidence 799999999999999999999999999999999999999999996 44555543 34664 999999999995 45
Q ss_pred hHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 337 VIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 337 ~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
++..+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 273 ~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~ 313 (461)
T PRK05249 273 NTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIG 313 (461)
T ss_pred cccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCC
Confidence 44333 455565 56789999999998 8999999999985
No 18
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.5e-33 Score=305.16 Aligned_cols=263 Identities=22% Similarity=0.342 Sum_probs=192.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccc--------------------c-------ccCc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTN--------------------G-------TVEA 108 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~--------------------g-------~~~~ 108 (584)
..+||||||||+||+++|..|++.|++|+|||+.. +++..+...+.+ | ..+.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF 82 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence 45899999999999999999999999999999863 455433222211 1 1111
Q ss_pred cccc-----------HHHHHHHHHc-CCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCC
Q 045826 109 RSIV-----------EPIRNIVRKK-GMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANT 176 (584)
Q Consensus 109 ~~i~-----------~~~~~~~~~~-g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~ 176 (584)
..+. ..+...+++. + ++++.++...++ .++|.+. + .++.||+||||||++|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~g--v~v~~g~~~~~~--~~~v~v~-~----------~~~~~d~lViATGs~p~~ 147 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWLRGLEG--VDVFRGHARFES--PNTVRVG-G----------ETLRAKRIFINTGARAAI 147 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCC--cEEEEEEEEEcc--CCEEEEC-c----------EEEEeCEEEEcCCCCCCC
Confidence 1111 1233444544 5 667777766554 4566653 1 278999999999999999
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCC
Q 045826 177 FNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSL 256 (584)
Q Consensus 177 ~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~ 256 (584)
|++||.+... +.+..+... .. ..+++++|||+|++|+|+|..+.+++
T Consensus 148 p~i~G~~~~~--~~~~~~~~~-------------~~-------~~~~~vvVIGgG~~g~E~A~~l~~~G----------- 194 (463)
T PRK06370 148 PPIPGLDEVG--YLTNETIFS-------------LD-------ELPEHLVIIGGGYIGLEFAQMFRRFG----------- 194 (463)
T ss_pred CCCCCCCcCc--eEcchHhhC-------------cc-------ccCCEEEEECCCHHHHHHHHHHHHcC-----------
Confidence 9999975421 111111110 00 12359999999999999999998865
Q ss_pred CCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCC--eE--EEEeCCCCeEEEEecceEEEccCC
Q 045826 257 KEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDK--EI--STKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 257 ~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v--~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
.+|+++++.+++++.+++++.+.+.+.|++.||+++++++|++++.+ ++ .+....++. ++++|.||+|+|.
T Consensus 195 ---~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~--~i~~D~Vi~A~G~ 269 (463)
T PRK06370 195 ---SEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAP--EITGSHILVAVGR 269 (463)
T ss_pred ---CeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCce--EEEeCEEEECcCC
Confidence 79999999999999999999999999999999999999999999643 33 232212233 4999999999995
Q ss_pred CCCchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 333 GTRPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 333 ~~~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.|+...+ +++.++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 270 --~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~ 312 (463)
T PRK06370 270 --VPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNG 312 (463)
T ss_pred --CcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCC
Confidence 4544434 456666 56789999999998 8999999999975
No 19
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=7.4e-34 Score=305.62 Aligned_cols=260 Identities=18% Similarity=0.267 Sum_probs=191.5
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc---------------------------cCcc
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT---------------------------VEAR 109 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~---------------------------~~~~ 109 (584)
.+||+|||||+||++||..|++.|.+|+|||+. .++++.+...+.+.+ .+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 479999999999999999999999999999986 466654332222211 1111
Q ss_pred c-----------ccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC-
Q 045826 110 S-----------IVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF- 177 (584)
Q Consensus 110 ~-----------i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~- 177 (584)
. +...+...+++.+ ++++.+++...+ .++|.+. + ..+.||+||||||++|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~g--v~~~~g~~~~~~--~~~v~v~-~----------~~~~~d~vIiAtGs~p~~p~ 145 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNK--VDVIFGHARFTK--DGTVEVN-G----------RDYTAPHILIATGGKPSFPE 145 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEcc--CCEEEEC-C----------EEEEeCEEEEecCCCCCCCC
Confidence 1 1112344555566 667777776554 4466552 1 2799999999999999988
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCC
Q 045826 178 NTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLK 257 (584)
Q Consensus 178 ~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~ 257 (584)
++||.+ +.. +.++.. .+. ...++++|||||++|+|+|..++.++
T Consensus 146 ~i~g~~-~~~---~~~~~~-------------~~~-------~~~~~vvIIGgG~iG~E~A~~l~~~g------------ 189 (450)
T TIGR01421 146 NIPGAE-LGT---DSDGFF-------------ALE-------ELPKRVVIVGAGYIAVELAGVLHGLG------------ 189 (450)
T ss_pred CCCCCc-eeE---cHHHhh-------------Ccc-------ccCCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 899863 211 111111 011 12359999999999999999999865
Q ss_pred CCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCC--e-EEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 258 EFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDK--E-ISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 258 ~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~-v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
.+|+++++.+++++.+++++.+.+.+.|+++||++++++.|++++.+ + +.+.. ++|+. .+++|.||||+|.
T Consensus 190 --~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~-~~g~~-~i~~D~vi~a~G~-- 263 (450)
T TIGR01421 190 --SETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHF-EDGKS-IDDVDELIWAIGR-- 263 (450)
T ss_pred --CcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEE-CCCcE-EEEcCEEEEeeCC--
Confidence 79999999999999999999999999999999999999999999642 2 33332 23532 4999999999995
Q ss_pred CchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 335 RPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 335 ~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.|++..+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 264 ~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~ 306 (450)
T TIGR01421 264 KPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVG 306 (450)
T ss_pred CcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCC
Confidence 4444333 455666 57789999999998 8999999999985
No 20
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=9.1e-34 Score=305.90 Aligned_cols=259 Identities=20% Similarity=0.305 Sum_probs=193.9
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcccccccc---------------------------ccCcc
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNG---------------------------TVEAR 109 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g---------------------------~~~~~ 109 (584)
.+||+|||||+||+++|..|++.|++|+|||+. .++++.+...+.+. ..+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 579999999999999999999999999999986 45554332211111 01111
Q ss_pred c-----------ccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 110 S-----------IVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 110 ~-----------i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
. +...++..+.+.+ ++++.+++..++. ++|.+ ++ ..+.||+||||||+.|+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~g--v~~~~g~~~~v~~--~~v~~-~g----------~~~~~d~lViATGs~p~~p~ 147 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNG--VDLIEGFARFVDA--HTVEV-NG----------ERYTADHILIATGGRPSIPD 147 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccC--CEEEE-CC----------EEEEeCEEEEecCCCCCCCC
Confidence 1 1122334455566 6688899988875 46766 32 27999999999999999999
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCC
Q 045826 179 TPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKE 258 (584)
Q Consensus 179 ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~ 258 (584)
+||.+ +++ +..+.. .+. ...++++|||+|++|+|+|..+.+++
T Consensus 148 i~g~~-~~~---~~~~~~-------------~~~-------~~~~~vvViGgG~~g~E~A~~l~~~g------------- 190 (450)
T PRK06116 148 IPGAE-YGI---TSDGFF-------------ALE-------ELPKRVAVVGAGYIAVEFAGVLNGLG------------- 190 (450)
T ss_pred CCCcc-eeE---chhHhh-------------Ccc-------ccCCeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 99863 221 111111 011 12359999999999999999998764
Q ss_pred CcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--Ce-EEEEeCCCCeEEEEecceEEEccCCCCC
Q 045826 259 FTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KE-ISTKDRATGQISSIPYGMVVWSTGIGTR 335 (584)
Q Consensus 259 ~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 335 (584)
.+|+++++++.+++.+++++.+.+.+.|++.||+++++++|++++. ++ +.+.. .+|++ +++|.||+|+|. .
T Consensus 191 -~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~-~~g~~--i~~D~Vv~a~G~--~ 264 (450)
T PRK06116 191 -SETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTL-EDGET--LTVDCLIWAIGR--E 264 (450)
T ss_pred -CeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEE-cCCcE--EEeCEEEEeeCC--C
Confidence 7999999999999999999999999999999999999999999963 33 44443 34664 999999999995 5
Q ss_pred chHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 336 PVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 336 p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
|++..+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 265 p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~ 306 (450)
T PRK06116 265 PNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTG 306 (450)
T ss_pred cCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCC
Confidence 555433 455565 56789999999998 8999999999974
No 21
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=304.64 Aligned_cols=268 Identities=21% Similarity=0.332 Sum_probs=187.3
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcccccccccc---------------------------Ccc
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTV---------------------------EAR 109 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~---------------------------~~~ 109 (584)
.+||+||||||||++||..+++.|.+|+|||++..++++.+...+.+.+. +..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 47999999999999999999999999999998666777653332211110 000
Q ss_pred cc-----------cHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 110 SI-----------VEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 110 ~i-----------~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
.+ ...+..+++..+ +.++.+++...+.. ++.+...+ + +..++.||+||||||++|. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~a~~~~~~--~v~v~~~~-----g-~~~~~~~d~lVIATGs~p~--~ 150 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNK--VDWIKGWGRLDGVG--KVVVKAED-----G-SETQLEAKDIVIATGSEPT--P 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccCC--EEEEEcCC-----C-ceEEEEeCEEEEeCCCCCC--C
Confidence 00 011233344444 67888886544433 44443211 1 1237999999999999884 4
Q ss_pred CCCcc-cccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCC
Q 045826 179 TPGVV-EHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLK 257 (584)
Q Consensus 179 ipG~~-~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~ 257 (584)
+||+. +....+ +..++.. +. ..+++++|||+|++|+|+|..+.+++
T Consensus 151 ipg~~~~~~~~~-~~~~~~~-------------~~-------~~~~~vvIIGgG~ig~E~A~~l~~~G------------ 197 (466)
T PRK06115 151 LPGVTIDNQRII-DSTGALS-------------LP-------EVPKHLVVIGAGVIGLELGSVWRRLG------------ 197 (466)
T ss_pred CCCCCCCCCeEE-CHHHHhC-------------Cc-------cCCCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 67753 221111 2221111 11 13459999999999999999998765
Q ss_pred CCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEE--EeCCCCeEEEEecceEEEccCCC
Q 045826 258 EFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEIST--KDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 258 ~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~--~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
.+|+++++.+++++.+++++.+.+.+.|++.||+++++++|++++. +++.+ ....+|+..++++|.||||+|.
T Consensus 198 --~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~- 274 (466)
T PRK06115 198 --AQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR- 274 (466)
T ss_pred --CeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC-
Confidence 7999999999999999999999999999999999999999999964 34433 3222343345999999999995
Q ss_pred CCchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 334 TRPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 334 ~~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.|++..+ ++..++ +.+| +.||+++|| +.|+|||+|||+.
T Consensus 275 -~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~ 316 (466)
T PRK06115 275 -RPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTS 316 (466)
T ss_pred -ccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCC
Confidence 5555434 445555 3445 779999998 8999999999985
No 22
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1.2e-33 Score=306.03 Aligned_cols=265 Identities=23% Similarity=0.296 Sum_probs=194.5
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcccccccc-------------------------ccCcc---
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNG-------------------------TVEAR--- 109 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g-------------------------~~~~~--- 109 (584)
+||||||||+||+++|..+++.|.+|+|||+.+ ++++.+...+.+. ..+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 589999999999999999999999999999875 6666443222110 00110
Q ss_pred ----cccH-----HHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCC
Q 045826 110 ----SIVE-----PIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTP 180 (584)
Q Consensus 110 ----~i~~-----~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ip 180 (584)
++.. .+..++++.+ ++++.+++..+| .++|.+.++. ..+.||+||||||+.|..|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~g--v~~~~g~~~~~~--~~~v~v~~g~---------~~~~~~~lIiATGs~p~~p~i~ 146 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYG--VDYLRGRARFKD--PKTVKVDLGR---------EVRGAKRFLIATGARPAIPPIP 146 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCC--cEEEEEEEEEcc--CCEEEEcCCe---------EEEEeCEEEEcCCCCCCCCCCC
Confidence 1111 1334556666 678889888776 4577664321 2689999999999999999999
Q ss_pred CcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCc
Q 045826 181 GVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFT 260 (584)
Q Consensus 181 G~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~ 260 (584)
|.++.. +.+..++.. .. ...++++|||+|++|+|+|..|.+++ .
T Consensus 147 G~~~~~--~~~~~~~~~-------------~~-------~~~~~vvIIGgG~~g~E~A~~l~~~g--------------~ 190 (463)
T TIGR02053 147 GLKEAG--YLTSEEALA-------------LD-------RIPESLAVIGGGAIGVELAQAFARLG--------------S 190 (463)
T ss_pred CcccCc--eECchhhhC-------------cc-------cCCCeEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 975431 222222111 00 12359999999999999999998765 7
Q ss_pred EEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCC--eEEEEeCCCCeEEEEecceEEEccCCCCCchH
Q 045826 261 RITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDK--EISTKDRATGQISSIPYGMVVWSTGIGTRPVI 338 (584)
Q Consensus 261 ~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~ 338 (584)
+|+++++.+++++.+++++...+.+.|++.||+++++++|++++.+ .+.+....++...++++|.||+|+|. .|+.
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~--~p~~ 268 (463)
T TIGR02053 191 EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR--RPNT 268 (463)
T ss_pred cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC--CcCC
Confidence 9999999999999999999999999999999999999999999643 33322211122225999999999995 4555
Q ss_pred HHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 339 MDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 339 ~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
..+ ++..++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 269 ~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~ 307 (463)
T TIGR02053 269 DGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTG 307 (463)
T ss_pred CCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCC
Confidence 434 455565 56789999999998 8999999999985
No 23
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-33 Score=303.33 Aligned_cols=267 Identities=20% Similarity=0.349 Sum_probs=193.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC-CCCCCccccccccc---------cCcc-------cccHHHH--
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY-FAFTPLLPSVTNGT---------VEAR-------SIVEPIR-- 116 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~-~~~~p~~~~~~~g~---------~~~~-------~i~~~~~-- 116 (584)
+.+||||||||+||+++|..|++.|.+|+|||+.+. ++++.....+.+.+ .+.. .+...++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK 81 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999999999999864 45443322222111 0110 0111111
Q ss_pred ---HHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHH
Q 045826 117 ---NIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVE 193 (584)
Q Consensus 117 ---~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~ 193 (584)
.+.+..+ ++++.+++..++.....|...++ ..++.||+||||||++|..|++||+++... +.+..
T Consensus 82 ~~~~~~~~~g--v~~~~g~~~~i~~~~~~v~~~~g---------~~~~~~d~lviATGs~p~~p~i~G~~~~~~-v~~~~ 149 (441)
T PRK08010 82 NFHNLADMPN--IDVIDGQAEFINNHSLRVHRPEG---------NLEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDST 149 (441)
T ss_pred HHHHHhhcCC--cEEEEEEEEEecCCEEEEEeCCC---------eEEEEeCEEEEcCCCcCCCCCCCCccCCCC-EEChh
Confidence 1122224 77889999999876444443222 126999999999999999999999854211 11221
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc
Q 045826 194 HAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN 273 (584)
Q Consensus 194 ~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~ 273 (584)
+.. + +. ...++++|||+|++|+|+|..+.+++ .+|+++++.+.++|
T Consensus 150 ~~~----------~---~~-------~~~~~v~ViGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~ 195 (441)
T PRK08010 150 GLL----------N---LK-------ELPGHLGILGGGYIGVEFASMFANFG--------------SKVTILEAASLFLP 195 (441)
T ss_pred Hhh----------c---cc-------ccCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCC
Confidence 111 0 00 12359999999999999999999864 79999999999999
Q ss_pred cccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHH-HHHhCC--c
Q 045826 274 MFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDF-MKQIGQ--A 348 (584)
Q Consensus 274 ~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l-~~~~~l--~ 348 (584)
.+++++.+.+.+.|++.||++++++.|++++. +.+.+.. .+|+ +++|.|++|+|.+ |++..+ ++..++ +
T Consensus 196 ~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~-~~g~---i~~D~vl~a~G~~--pn~~~l~~~~~gl~~~ 269 (441)
T PRK08010 196 REDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHS-EHAQ---LAVDALLIASGRQ--PATASLHPENAGIAVN 269 (441)
T ss_pred CcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE-cCCe---EEeCEEEEeecCC--cCCCCcCchhcCcEEC
Confidence 99999999999999999999999999999964 3455543 2243 8899999999954 444332 445565 5
Q ss_pred CCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 349 NRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 349 ~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.+|+|.||+++|| +.|||||+|||+.
T Consensus 270 ~~G~i~vd~~~~T-s~~~IyA~GD~~~ 295 (441)
T PRK08010 270 ERGAIVVDKYLHT-TADNIWAMGDVTG 295 (441)
T ss_pred CCCcEEECCCccc-CCCCEEEeeecCC
Confidence 6789999999999 8999999999986
No 24
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=3.5e-33 Score=301.50 Aligned_cols=274 Identities=19% Similarity=0.260 Sum_probs=195.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcccC-CCeEEEEcCC--------CCCCCCCccccccccc---------------------
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSN-SFEVQVVSPR--------NYFAFTPLLPSVTNGT--------------------- 105 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~-g~~V~lid~~--------~~~~~~p~~~~~~~g~--------------------- 105 (584)
..+||+|||||+||..+|..+++. |.+|+|||++ ..++++.+...+.+.+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 458999999999999999999986 8999999974 3466654332221111
Q ss_pred -------cCccc-----------ccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEE
Q 045826 106 -------VEARS-----------IVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILV 167 (584)
Q Consensus 106 -------~~~~~-----------i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LV 167 (584)
++... +...+..+++.. ..+++++++...+++ ++|.+....+. ++...+.+.||+||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~-~gv~~i~G~a~f~~~--~~v~V~~~~~~--~~~~~~~~~~d~lI 156 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADT-EGLTFFLGWGALEDK--NVVLVRESADP--KSAVKERLQAEHIL 156 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEEEEEEccC--CEEEEeeccCC--CCCcceEEECCEEE
Confidence 01101 111122334432 138899999888875 46766532110 01112479999999
Q ss_pred EccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHH
Q 045826 168 IAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVID 247 (584)
Q Consensus 168 lAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~ 247 (584)
||||+.|..|++||.+. ++ +..++.. +. ...++++|||||++|+|+|..+..+..
T Consensus 157 IATGs~p~~p~i~G~~~-~~---~~~~~~~-------------~~-------~~~~~vvIIGgG~iG~E~A~~~~~l~~- 211 (486)
T TIGR01423 157 LATGSWPQMLGIPGIEH-CI---SSNEAFY-------------LD-------EPPRRVLTVGGGFISVEFAGIFNAYKP- 211 (486)
T ss_pred EecCCCCCCCCCCChhh-ee---chhhhhc-------------cc-------cCCCeEEEECCCHHHHHHHHHHHHhcc-
Confidence 99999999999999642 22 2222211 11 123599999999999999998876521
Q ss_pred hHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--Ce-EEEEeCCCCeEEEEecc
Q 045826 248 DLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KE-ISTKDRATGQISSIPYG 324 (584)
Q Consensus 248 ~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~-v~~~~~~~G~~~~i~~D 324 (584)
.+.+|+|+++.+++++.+++++.+.+.+.|+++||++++++.+++++. ++ +.+.. .+|+. +++|
T Consensus 212 ----------~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~-~~g~~--i~~D 278 (486)
T TIGR01423 212 ----------RGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTF-ESGKT--LDVD 278 (486)
T ss_pred ----------CCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEE-cCCCE--EEcC
Confidence 247999999999999999999999999999999999999999999963 23 33332 23654 9999
Q ss_pred eEEEccCCCCCchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 325 MVVWSTGIGTRPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 325 ~vI~a~G~~~~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.||||+|. .|++..+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 279 ~vl~a~G~--~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~ 329 (486)
T TIGR01423 279 VVMMAIGR--VPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTD 329 (486)
T ss_pred EEEEeeCC--CcCcccCCchhhCceECCCCCEecCCCCcC-CCCCEEEeeecCC
Confidence 99999995 4444333 455665 57789999999998 8999999999975
No 25
>PLN02546 glutathione reductase
Probab=100.00 E-value=2.2e-33 Score=306.25 Aligned_cols=260 Identities=20% Similarity=0.323 Sum_probs=194.1
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCC---------CCCCCCCccccccccc----------------------
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPR---------NYFAFTPLLPSVTNGT---------------------- 105 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~---------~~~~~~p~~~~~~~g~---------------------- 105 (584)
.+||+|||||+||+.+|..+++.|.+|+|||+. ..++++.+...+.+.+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 479999999999999999999999999999962 2345543322221110
Q ss_pred -----cCcc-----------cccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEc
Q 045826 106 -----VEAR-----------SIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIA 169 (584)
Q Consensus 106 -----~~~~-----------~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlA 169 (584)
++.. .+...+...+++.+ ++++.++++.+|++ +|.+. + ..+.||+||||
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~g--V~~i~G~a~~vd~~--~V~v~-G----------~~~~~D~LVIA 223 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAG--VTLIEGRGKIVDPH--TVDVD-G----------KLYTARNILIA 223 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEeEEEEccCC--EEEEC-C----------EEEECCEEEEe
Confidence 1110 12223455566666 77899999999875 56552 2 17999999999
Q ss_pred cCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhH
Q 045826 170 MGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDL 249 (584)
Q Consensus 170 tGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~ 249 (584)
||++|..|++||.+ +++ +..++.. ++ ...++|+|||||++|+|+|..+..++
T Consensus 224 TGs~p~~P~IpG~~-~v~---~~~~~l~-------------~~-------~~~k~V~VIGgG~iGvE~A~~L~~~g---- 275 (558)
T PLN02546 224 VGGRPFIPDIPGIE-HAI---DSDAALD-------------LP-------SKPEKIAIVGGGYIALEFAGIFNGLK---- 275 (558)
T ss_pred CCCCCCCCCCCChh-hcc---CHHHHHh-------------cc-------ccCCeEEEECCCHHHHHHHHHHHhcC----
Confidence 99999999999974 221 2222111 11 23459999999999999999998764
Q ss_pred hhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC---CeEEEEeCCCCeEEEEecceE
Q 045826 250 SKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD---KEISTKDRATGQISSIPYGMV 326 (584)
Q Consensus 250 ~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~---~~v~~~~~~~G~~~~i~~D~v 326 (584)
.+|+++++.+++++.+++++.+.+.+.|+++||++++++.+++++. +.+.+.. .+++ .+.+|.|
T Consensus 276 ----------~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~-~~g~--~~~~D~V 342 (558)
T PLN02546 276 ----------SDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKT-NKGT--VEGFSHV 342 (558)
T ss_pred ----------CeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEE-CCeE--EEecCEE
Confidence 7999999999999999999999999999999999999999999953 3344443 2343 2558999
Q ss_pred EEccCCCCCchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 327 VWSTGIGTRPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 327 I~a~G~~~~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
||++|.+ |+...+ ++.+++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 343 iva~G~~--Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~ 391 (558)
T PLN02546 343 MFATGRK--PNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTD 391 (558)
T ss_pred EEeeccc--cCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCC
Confidence 9999954 444333 566666 56789999999998 8999999999985
No 26
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=5.6e-33 Score=300.81 Aligned_cols=267 Identities=19% Similarity=0.299 Sum_probs=195.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccc---------------------cc------cC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTN---------------------GT------VE 107 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~---------------------g~------~~ 107 (584)
...+||+|||||+||+++|..|++.|.+|+|||+. .++++.....+.+ |. .+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 82 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD 82 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence 34689999999999999999999999999999986 3555433222110 10 01
Q ss_pred cccccHH------------HHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCC
Q 045826 108 ARSIVEP------------IRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQAN 175 (584)
Q Consensus 108 ~~~i~~~------------~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~ 175 (584)
...+... ++..++.. ..++++.++|..+|++...|.+.++. ..++.||+||||||++|.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~v~~~~g~v~~id~~~~~V~~~~g~--------~~~~~~d~lViATGs~p~ 153 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILREN-AAITVLNGEARFVDERTLTVTLNDGG--------EQTVHFDRAFIGTGARPA 153 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcC-CCeEEEEEEEEEecCCEEEEEecCCC--------eEEEECCEEEEeCCCCCC
Confidence 1111111 11222222 14889999999999988777765432 237999999999999999
Q ss_pred CCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcC
Q 045826 176 TFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPS 255 (584)
Q Consensus 176 ~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~ 255 (584)
.|++||+++.. +.+..++..+. ...++++|||+|++|+|+|..|.+++
T Consensus 154 ~p~i~G~~~~~--~~~~~~~~~l~--------------------~~~~~vvViG~G~~G~E~A~~l~~~g---------- 201 (468)
T PRK14694 154 EPPVPGLAETP--YLTSTSALELD--------------------HIPERLLVIGASVVALELAQAFARLG---------- 201 (468)
T ss_pred CCCCCCCCCCc--eEcchhhhchh--------------------cCCCeEEEECCCHHHHHHHHHHHHcC----------
Confidence 99999986531 12222222110 12359999999999999999998865
Q ss_pred CCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCC--eEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 256 LKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDK--EISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 256 ~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
.+|+++++ +++++.+++++.+.+++.|++.||++++++.|++++.+ .+.+.. + +.+ +++|.||+|+|..
T Consensus 202 ----~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~-~-~~~--i~~D~vi~a~G~~ 272 (468)
T PRK14694 202 ----SRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILET-N-AGT--LRAEQLLVATGRT 272 (468)
T ss_pred ----CeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE-C-CCE--EEeCEEEEccCCC
Confidence 79999986 57888899999999999999999999999999999643 344433 2 333 9999999999954
Q ss_pred CCchHHHH-HHHhCC-cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 334 TRPVIMDF-MKQIGQ-ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 334 ~~p~~~~l-~~~~~l-~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
++ ...+ ++.+++ ..+|+|.||+++|| +.|+|||+|||+.
T Consensus 273 pn--~~~l~l~~~g~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~ 313 (468)
T PRK14694 273 PN--TENLNLESIGVETERGAIRIDEHLQT-TVSGIYAAGDCTD 313 (468)
T ss_pred CC--cCCCCchhcCcccCCCeEeeCCCccc-CCCCEEEEeecCC
Confidence 44 4322 345666 45788999999998 8999999999985
No 27
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=3.9e-33 Score=304.17 Aligned_cols=272 Identities=17% Similarity=0.284 Sum_probs=194.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc-------------------------cCcc
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT-------------------------VEAR 109 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~-------------------------~~~~ 109 (584)
...+||||||||+||+++|..+++.|.+|+|||++ .++++.+...+.+.+ ++..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 35689999999999999999999999999999986 466654332222111 1111
Q ss_pred cc-----------cHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEee------------cCccC--------CCCCce
Q 045826 110 SI-----------VEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRT------------TEDRT--------CGGKEE 158 (584)
Q Consensus 110 ~i-----------~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~------------~~~~~--------~~~~~~ 158 (584)
.+ ...+.+.++..+ |+++.++...+++. +|.+.. ..+.. .++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g--v~~~~G~a~f~~~~--~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-- 198 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDN--VEYFEGKGSLLSEN--QVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG-- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC--cEEEEEEEEEecCC--EEEeeccccccccccccccccceeeeccceecCCC--
Confidence 11 112334455555 77889988777644 333210 00000 0011
Q ss_pred EEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHH
Q 045826 159 FALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFA 238 (584)
Q Consensus 159 ~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A 238 (584)
..+.||+||||||++|..|++||.+ +++ +.++.. + + ..+++++|||+|++|+|+|
T Consensus 199 ~~i~ad~lVIATGS~P~~P~IpG~~-~v~---ts~~~~----------~---l--------~~pk~VvIIGgG~iGlE~A 253 (561)
T PTZ00058 199 QVIEGKNILIAVGNKPIFPDVKGKE-FTI---SSDDFF----------K---I--------KEAKRIGIAGSGYIAVELI 253 (561)
T ss_pred cEEECCEEEEecCCCCCCCCCCCce-eEE---EHHHHh----------h---c--------cCCCEEEEECCcHHHHHHH
Confidence 2799999999999999999999963 222 222211 1 1 1145999999999999999
Q ss_pred HHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCC---eEEEEeCCC
Q 045826 239 AALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDK---EISTKDRAT 315 (584)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~---~v~~~~~~~ 315 (584)
..+.+++ .+|+++++.+++++.+++++.+.+.+.|++.||++++++.|.+++++ ++.+...++
T Consensus 254 ~~l~~~G--------------~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~ 319 (561)
T PTZ00058 254 NVVNRLG--------------AESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDG 319 (561)
T ss_pred HHHHHcC--------------CcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCC
Confidence 9999875 79999999999999999999999999999999999999999999743 344432222
Q ss_pred CeEEEEecceEEEccCCCCCchHHHH-HHHhCC-cCCCceeeCCCCccCCCCCEEEeCcccccc
Q 045826 316 GQISSIPYGMVVWSTGIGTRPVIMDF-MKQIGQ-ANRRVLATDEWLRVEGCESVYALGDCATIN 377 (584)
Q Consensus 316 G~~~~i~~D~vI~a~G~~~~p~~~~l-~~~~~l-~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 377 (584)
++ ++++|.|++|+| ..|++..+ ++..++ ..+|+|.||+++|| +.|||||+|||+...
T Consensus 320 ~~--~i~aD~VlvA~G--r~Pn~~~L~l~~~~~~~~~G~I~VDe~lqT-s~p~IYA~GDv~~~~ 378 (561)
T PTZ00058 320 RK--YEHFDYVIYCVG--RSPNTEDLNLKALNIKTPKGYIKVDDNQRT-SVKHIYAVGDCCMVK 378 (561)
T ss_pred CE--EEECCEEEECcC--CCCCccccCccccceecCCCeEEECcCCcc-CCCCEEEeEeccCcc
Confidence 33 499999999999 45666544 233444 56789999999998 999999999999853
No 28
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=6.6e-33 Score=298.17 Aligned_cols=266 Identities=20% Similarity=0.356 Sum_probs=195.1
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC-CCCCCcccccccccc---------CcccccHH-----------H
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY-FAFTPLLPSVTNGTV---------EARSIVEP-----------I 115 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~-~~~~p~~~~~~~g~~---------~~~~i~~~-----------~ 115 (584)
.+||||||||+||++||..|++.|++|+|||+++. ++++.....+.+.+. +...+... .
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999875 455433222222111 11111111 2
Q ss_pred HHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHH
Q 045826 116 RNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHA 195 (584)
Q Consensus 116 ~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a 195 (584)
.+.+.+.+ ++++.+++..++ +++|.+..+. +..++.||+||||||++|+.|++||+.+... +.+..+.
T Consensus 83 ~~~~~~~g--V~~~~g~~~~~~--~~~v~v~~~~-------~~~~~~~d~vViATGs~~~~p~i~G~~~~~~-v~~~~~~ 150 (438)
T PRK07251 83 YAMLAGSG--VDLYDAEAHFVS--NKVIEVQAGD-------EKIELTAETIVINTGAVSNVLPIPGLADSKH-VYDSTGI 150 (438)
T ss_pred HHHHHhCC--CEEEEEEEEEcc--CCEEEEeeCC-------CcEEEEcCEEEEeCCCCCCCCCCCCcCCCCc-EEchHHH
Confidence 23455556 667888887764 5677775422 1137999999999999999999999754211 1122211
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccc
Q 045826 196 QRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF 275 (584)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~ 275 (584)
..+ . ...++++|||||++|+|+|..+++.+ .+|+++++.+++++.+
T Consensus 151 ~~~-------------~-------~~~~~vvIIGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~ 196 (438)
T PRK07251 151 QSL-------------E-------TLPERLGIIGGGNIGLEFAGLYNKLG--------------SKVTVLDAASTILPRE 196 (438)
T ss_pred hcc-------------h-------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCccCCCC
Confidence 110 0 12349999999999999999998754 7999999999999999
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEcCC--eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHH-HHHhCC--cCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLSDK--EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDF-MKQIGQ--ANR 350 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l-~~~~~l--~~~ 350 (584)
++++.+.+.+.|++.||+++++++|++++.+ .+.+.. +|++ +++|.+|+|+|. .|+...+ ++..++ +.+
T Consensus 197 ~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~--~g~~--i~~D~viva~G~--~p~~~~l~l~~~~~~~~~~ 270 (438)
T PRK07251 197 EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT--EDET--YRFDALLYATGR--KPNTEPLGLENTDIELTER 270 (438)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE--CCeE--EEcCEEEEeeCC--CCCcccCCchhcCcEECCC
Confidence 9999999999999999999999999999643 444443 3554 999999999995 4444333 334454 567
Q ss_pred CceeeCCCCccCCCCCEEEeCcccc
Q 045826 351 RVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 351 g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
|+|.||+++|| +.|||||+|||+.
T Consensus 271 g~i~vd~~~~t-~~~~IyaiGD~~~ 294 (438)
T PRK07251 271 GAIKVDDYCQT-SVPGVFAVGDVNG 294 (438)
T ss_pred CcEEECCCccc-CCCCEEEeeecCC
Confidence 89999999999 8999999999985
No 29
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.1e-33 Score=301.10 Aligned_cols=266 Identities=21% Similarity=0.340 Sum_probs=186.5
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcccccccccc--------------------C------ccc
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTV--------------------E------ARS 110 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~--------------------~------~~~ 110 (584)
++||+|||||+||++||.+|++.|.+|+|||++ .++++.....+.+.+. . ...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 82 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGA 82 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHH
Confidence 579999999999999999999999999999986 3455433222211110 0 000
Q ss_pred cc-----------HHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCC
Q 045826 111 IV-----------EPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179 (584)
Q Consensus 111 i~-----------~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~i 179 (584)
+. .....+++..+ +..+.++...++.. ++.+...++ +..++.||+||||||+.|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~g~~~~~~~~--~v~v~~~~g------~~~~~~~d~lViATGs~p~~~-- 150 (466)
T PRK07818 83 AFDRSRKVAEGRVKGVHFLMKKNK--ITEIHGYGTFTDAN--TLEVDLNDG------GTETVTFDNAIIATGSSTRLL-- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEcCCC--EEEEEecCC------CeeEEEcCEEEEeCCCCCCCC--
Confidence 00 00111222233 56677777766644 555543211 123799999999999998754
Q ss_pred CCcc--cccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCC
Q 045826 180 PGVV--EHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLK 257 (584)
Q Consensus 180 pG~~--~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~ 257 (584)
||.+ +.++ +..+. + . .. ...++++|||+|++|+|+|..+++++
T Consensus 151 pg~~~~~~v~---~~~~~------~----~---~~-------~~~~~vvVIGgG~ig~E~A~~l~~~G------------ 195 (466)
T PRK07818 151 PGTSLSENVV---TYEEQ------I----L---SR-------ELPKSIVIAGAGAIGMEFAYVLKNYG------------ 195 (466)
T ss_pred CCCCCCCcEE---chHHH------h----c---cc-------cCCCeEEEECCcHHHHHHHHHHHHcC------------
Confidence 6643 2222 22111 0 0 00 12359999999999999999998865
Q ss_pred CCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCCe--EEEEeC-CCCeEEEEecceEEEccCCCC
Q 045826 258 EFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKE--ISTKDR-ATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 258 ~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~--v~~~~~-~~G~~~~i~~D~vI~a~G~~~ 334 (584)
.+|+++++.++++|.+++++.+.+.+.|+++||+++++++|++++.++ +.+... .+|+..++++|.||||+|.
T Consensus 196 --~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~-- 271 (466)
T PRK07818 196 --VDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF-- 271 (466)
T ss_pred --CeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc--
Confidence 799999999999999999999999999999999999999999996542 322211 2465446999999999995
Q ss_pred CchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 335 RPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 335 ~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.|++..+ ++..++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 272 ~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~ 314 (466)
T PRK07818 272 APRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTA 314 (466)
T ss_pred ccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCC
Confidence 4555433 456665 56789999999998 8999999999974
No 30
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=7.5e-33 Score=282.74 Aligned_cols=264 Identities=20% Similarity=0.268 Sum_probs=188.9
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcc----cccccc--ccCcccccHHHHHHHHHcCCcEEEEEE
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLL----PSVTNG--TVEARSIVEPIRNIVRKKGMDIQFKEA 131 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~----~~~~~g--~~~~~~i~~~~~~~~~~~g~~v~~~~~ 131 (584)
+||+|||||+||+++|..|++.|++|+|||+++ .++.... +..+.. .....++...+++.+++.+++ ++.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~--~~~~ 77 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAE--IIYE 77 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCe--EEEE
Confidence 589999999999999999999999999999876 3322111 111110 122346677788888888855 4458
Q ss_pred EEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcC
Q 045826 132 ECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASL 211 (584)
Q Consensus 132 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~ 211 (584)
+|+.++++++.+.+....+ ..+.||+||+|+|+.|+.+++||..++.. ..+.....
T Consensus 78 ~v~~v~~~~~~~~v~~~~~--------~~~~~d~liiAtG~~~~~~~i~g~~~~~~--~~~~~~~~-------------- 133 (300)
T TIGR01292 78 EVIKVDLSDRPFKVKTGDG--------KEYTAKAVIIATGASARKLGIPGEDEFLG--RGVSYCAT-------------- 133 (300)
T ss_pred EEEEEEecCCeeEEEeCCC--------CEEEeCEEEECCCCCcccCCCCChhhcCC--ccEEEeee--------------
Confidence 9999999877555543221 28999999999999999889998643210 00000000
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhC-
Q 045826 212 PNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRD- 290 (584)
Q Consensus 212 ~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~- 290 (584)
. .....++++|+|||+|++|+|+|..+.+.+ .+|+++++.+.+.. ...+.+.|++.
T Consensus 134 --~-~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~--------------~~V~~v~~~~~~~~------~~~~~~~l~~~~ 190 (300)
T TIGR01292 134 --C-DGPFFKNKEVAVVGGGDSAIEEALYLTRIA--------------KKVTLVHRRDKFRA------EKILLDRLRKNP 190 (300)
T ss_pred --c-ChhhcCCCEEEEECCChHHHHHHHHHHhhc--------------CEEEEEEeCcccCc------CHHHHHHHHhCC
Confidence 0 011134569999999999999999998764 79999999876532 23455677777
Q ss_pred CcEEEeCCceeEEcCCe----EEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHh-CCcCCCceeeCCCCccCCCC
Q 045826 291 GIDLKTGSMVVKLSDKE----ISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQI-GQANRRVLATDEWLRVEGCE 365 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~----v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~-~l~~~g~i~Vd~~l~~~~~~ 365 (584)
||++++++++++++.++ +++.+..+|+..++++|.+|||+|++++. .+++.. .++.+|++.||+++++ ++|
T Consensus 191 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~---~~l~~~~~~~~~g~i~v~~~~~t-~~~ 266 (300)
T TIGR01292 191 NIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNT---ELLKGLLELDEGGYIVTDEGMRT-SVP 266 (300)
T ss_pred CeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCCh---HHHHHhheecCCCcEEECCCCcc-CCC
Confidence 99999999999997653 44544334554569999999999965554 343333 3366789999999998 999
Q ss_pred CEEEeCcccc
Q 045826 366 SVYALGDCAT 375 (584)
Q Consensus 366 ~VfaiGD~a~ 375 (584)
|||++|||+.
T Consensus 267 ~vya~GD~~~ 276 (300)
T TIGR01292 267 GVFAAGDVRD 276 (300)
T ss_pred CEEEeecccC
Confidence 9999999985
No 31
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=4.8e-33 Score=300.77 Aligned_cols=267 Identities=21% Similarity=0.326 Sum_probs=195.1
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcccccccccc-----------------------------C
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTV-----------------------------E 107 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~-----------------------------~ 107 (584)
|++|||||||++|+.+|..+++.|.+|+|||++. ++++.+...+.+.+. +
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 5789999999999999999999999999999875 566554433322110 0
Q ss_pred cccc-----------cHHHHHHHHHcCCcEEEEEEEEEEEe--cCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCC
Q 045826 108 ARSI-----------VEPIRNIVRKKGMDIQFKEAECYKID--AEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQA 174 (584)
Q Consensus 108 ~~~i-----------~~~~~~~~~~~g~~v~~~~~~v~~id--~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~ 174 (584)
...+ ...+++.+++.+ ++++.+++..++ .+.+++.+.... + +..++.||+||||||+.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~g--V~~~~g~~~~~~~~~~~~~v~V~~~~-----g-~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREG--VRVIAGRGRLIDPGLGPHRVKVTTAD-----G-GEETLDADVVLIATGASP 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEEEEEEEEeecccCCCEEEEEeCC-----C-ceEEEecCEEEEcCCCCC
Confidence 1011 122445566666 778999998855 445566554321 1 123699999999999999
Q ss_pred CCCCCCCcc-cccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhC
Q 045826 175 NTFNTPGVV-EHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLY 253 (584)
Q Consensus 175 ~~~~ipG~~-~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~ 253 (584)
..++.++.. +.++...++. .+ . ...++++|||+|++|+|+|..|++++
T Consensus 152 ~~~p~~~~~~~~v~~~~~~~---~~-------------~-------~~~~~vvVIGgG~ig~E~A~~l~~~g-------- 200 (466)
T PRK07845 152 RILPTAEPDGERILTWRQLY---DL-------------D-------ELPEHLIVVGSGVTGAEFASAYTELG-------- 200 (466)
T ss_pred CCCCCCCCCCceEEeehhhh---cc-------------c-------ccCCeEEEECCCHHHHHHHHHHHHcC--------
Confidence 866554432 2232221111 00 0 12349999999999999999998765
Q ss_pred cCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccC
Q 045826 254 PSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTG 331 (584)
Q Consensus 254 ~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G 331 (584)
.+|+++++.+++++.+++++.+.+.+.|+++||+++++++|++++ ++++.+.. .+|++ +++|.||+++|
T Consensus 201 ------~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~-~~g~~--l~~D~vl~a~G 271 (466)
T PRK07845 201 ------VKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTL-TDGRT--VEGSHALMAVG 271 (466)
T ss_pred ------CeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEE-CCCcE--EEecEEEEeec
Confidence 799999999999999999999999999999999999999999995 44555543 34664 99999999999
Q ss_pred CCCCchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 332 IGTRPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 332 ~~~~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.++ +...+ +++.++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 272 ~~p--n~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~ 315 (466)
T PRK07845 272 SVP--NTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTG 315 (466)
T ss_pred CCc--CCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccC
Confidence 544 44332 456665 56789999999998 8999999999985
No 32
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.1e-32 Score=296.90 Aligned_cols=268 Identities=17% Similarity=0.263 Sum_probs=192.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccc--------------------cc------cCc
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTN--------------------GT------VEA 108 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~--------------------g~------~~~ 108 (584)
..++||+|||||+||+++|..|++.|.+|+|||+.+.+++..+...+.+ |. .+.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 93 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDR 93 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCH
Confidence 3468999999999999999999999999999999866666543322111 10 000
Q ss_pred cccc-------HH-----HHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCC
Q 045826 109 RSIV-------EP-----IRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANT 176 (584)
Q Consensus 109 ~~i~-------~~-----~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~ 176 (584)
..+. .. +..+++.. ..++++++++..++.. ++.+...+ + +..++.||+||||||+.|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~G~a~f~~~~--~v~v~~~~-----g-~~~~~~~d~lViATGs~p~~ 164 (479)
T PRK14727 94 GLLLHQQQARVEELRHAKYQSILDGN-PALTLLKGYARFKDGN--TLVVRLHD-----G-GERVLAADRCLIATGSTPTI 164 (479)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhc-CCeEEEEEEEEEecCC--EEEEEeCC-----C-ceEEEEeCEEEEecCCCCCC
Confidence 0110 00 12223322 1377899998888865 44443221 1 12379999999999999999
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCC
Q 045826 177 FNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSL 256 (584)
Q Consensus 177 ~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~ 256 (584)
|++||..+.. .+ +..+.. .. . ...++++|||+|++|+|+|..+.+++
T Consensus 165 p~i~G~~~~~-~~-~~~~~l----------~~---~-------~~~k~vvVIGgG~iG~E~A~~l~~~G----------- 211 (479)
T PRK14727 165 PPIPGLMDTP-YW-TSTEAL----------FS---D-------ELPASLTVIGSSVVAAEIAQAYARLG----------- 211 (479)
T ss_pred CCCCCcCccc-ee-cchHHh----------cc---c-------cCCCeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 9999975421 11 111110 00 0 12359999999999999999998765
Q ss_pred CCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 257 KEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 257 ~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
.+|+++++ +++++.+++.+.+.+.+.|++.||+++++++|++++ ++.+.+.. .+++ +++|.||||+|.
T Consensus 212 ---~~Vtlv~~-~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~-~~g~---i~aD~VlvA~G~-- 281 (479)
T PRK14727 212 ---SRVTILAR-STLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTT-GHGE---LRAEKLLISTGR-- 281 (479)
T ss_pred ---CEEEEEEc-CCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEE-cCCe---EEeCEEEEccCC--
Confidence 79999987 468888999999999999999999999999999985 34455443 2243 899999999995
Q ss_pred CchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 335 RPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 335 ~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.|++..+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 282 ~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~ 324 (479)
T PRK14727 282 HANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSD 324 (479)
T ss_pred CCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCC
Confidence 4544333 455565 56789999999999 8999999999985
No 33
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=3e-32 Score=292.98 Aligned_cols=258 Identities=21% Similarity=0.255 Sum_probs=188.8
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc--------------------------cCcccc
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT--------------------------VEARSI 111 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~--------------------------~~~~~i 111 (584)
+||||||||++|.++|..+ .|.+|+|||++ .++++.+...+.+.+ ++...+
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 7999999999999998764 59999999985 456654433222111 111111
Q ss_pred cHH-------H-----HHH-HHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 112 VEP-------I-----RNI-VRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 112 ~~~-------~-----~~~-~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
... + ... ++..+ ++++.+++..++ .++|.+.++. .+.||+||||||++|..|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~a~~~~--~~~V~v~~g~----------~~~~d~lViATGs~p~~p~ 144 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPN--IDVYRGHARFIG--PKTLRTGDGE----------EITADQVVIAAGSRPVIPP 144 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCC--cEEEEEEEEEec--CCEEEECCCC----------EEEeCEEEEcCCCCCCCCC
Confidence 111 1 111 33444 778899988885 5678775432 7999999999999999999
Q ss_pred CCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCC
Q 045826 179 TPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKE 258 (584)
Q Consensus 179 ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~ 258 (584)
+||.... .+.+.+++..+. ...++++|||||++|+|+|..+++++
T Consensus 145 i~g~~~~--~~~~~~~~~~l~--------------------~~~~~vvIIGgG~iG~E~A~~l~~~G------------- 189 (451)
T PRK07846 145 VIADSGV--RYHTSDTIMRLP--------------------ELPESLVIVGGGFIAAEFAHVFSALG------------- 189 (451)
T ss_pred CCCcCCc--cEEchHHHhhhh--------------------hcCCeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 9986432 233444433221 12349999999999999999998865
Q ss_pred CcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCC--eEEEEeCCCCeEEEEecceEEEccCCCCCc
Q 045826 259 FTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDK--EISTKDRATGQISSIPYGMVVWSTGIGTRP 336 (584)
Q Consensus 259 ~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p 336 (584)
.+|+++++.+++++.+++++.+.+.+.+ +.||+++++++|++++.+ ++.+.. .+|+. +++|.|++|+|. .|
T Consensus 190 -~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~-~~g~~--i~~D~vl~a~G~--~p 262 (451)
T PRK07846 190 -VRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRL-DDGST--VEADVLLVATGR--VP 262 (451)
T ss_pred -CeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEE-CCCcE--eecCEEEEEECC--cc
Confidence 7999999999999999999988877655 568999999999999643 454443 34664 999999999995 44
Q ss_pred hHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 337 VIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 337 ~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
++..+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 263 n~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~ 303 (451)
T PRK07846 263 NGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSS 303 (451)
T ss_pred CccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCC
Confidence 44333 355666 57789999999997 8999999999985
No 34
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.8e-32 Score=297.07 Aligned_cols=266 Identities=21% Similarity=0.346 Sum_probs=192.1
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcccccccc-------------------ccCc-------ccc
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNG-------------------TVEA-------RSI 111 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g-------------------~~~~-------~~i 111 (584)
+||+|||||+||+++|.+|++.|.+|+|||+ +.++++.....+.+. .+.. ..+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKM 80 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHH
Confidence 7999999999999999999999999999999 666665332211111 0000 000
Q ss_pred c-----------HHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCC
Q 045826 112 V-----------EPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTP 180 (584)
Q Consensus 112 ~-----------~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ip 180 (584)
. ..+..+++..+ ++++.+++..+++. .+.+.... + ..++.||+||+|||++|+.+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~--~~~v~~~~-----g--~~~~~~d~lVlAtG~~p~~~~~~ 149 (461)
T TIGR01350 81 QKRKNKVVKKLVGGVKGLLKKNK--VTVIKGEAKFLDPG--TVLVTGEN-----G--EETLTAKNIIIATGSRPRSLPGP 149 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEccCC--EEEEecCC-----C--cEEEEeCEEEEcCCCCCCCCCCC
Confidence 0 01123344455 67888988888755 44444321 1 13799999999999999888776
Q ss_pred -CcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCC
Q 045826 181 -GVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEF 259 (584)
Q Consensus 181 -G~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~ 259 (584)
+.... .+.+..++..+ . ...++++|||||++|+|+|..+.+.+
T Consensus 150 ~~~~~~--~~~~~~~~~~~-------------~-------~~~~~vvViGgG~~g~e~A~~l~~~g-------------- 193 (461)
T TIGR01350 150 FDFDGE--VVITSTGALNL-------------K-------EVPESLVIIGGGVIGIEFASIFASLG-------------- 193 (461)
T ss_pred CCCCCc--eEEcchHHhcc-------------c-------cCCCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 33211 12233332211 0 12359999999999999999998764
Q ss_pred cEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCCCCch
Q 045826 260 TRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIGTRPV 337 (584)
Q Consensus 260 ~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~ 337 (584)
.+|+++++.+++++.+++++.+.+.+.|++.||+++++++|++++ ++++.+.. .+|+..++++|.+|+|+|.. |+
T Consensus 194 ~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~-~~g~~~~i~~D~vi~a~G~~--p~ 270 (461)
T TIGR01350 194 SKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYEN-KGGETETLTGEKVLVAVGRK--PN 270 (461)
T ss_pred CcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEE-eCCcEEEEEeCEEEEecCCc--cc
Confidence 799999999999999999999999999999999999999999885 34565543 23533359999999999954 44
Q ss_pred HHH-HHHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 338 IMD-FMKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 338 ~~~-l~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
+.. +++..++ +.+|+|.||+++|+ +.|+|||+|||+.
T Consensus 271 ~~~l~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~ 310 (461)
T TIGR01350 271 TEGLGLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIG 310 (461)
T ss_pred CCCCCcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCC
Confidence 432 3556665 56789999999998 8999999999985
No 35
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.2e-32 Score=297.29 Aligned_cols=263 Identities=22% Similarity=0.346 Sum_probs=188.7
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccc--------------------cc--------cCccc
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTN--------------------GT--------VEARS 110 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~--------------------g~--------~~~~~ 110 (584)
+|||||||+||+++|..+++.|.+|+|||+++ ++++.+...+.+ |. .+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 89999999999999999999999999999875 444332211111 11 11111
Q ss_pred ccH-----------HHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCC
Q 045826 111 IVE-----------PIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNT 179 (584)
Q Consensus 111 i~~-----------~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~i 179 (584)
+.. .+..+++..+ ++++++++..+|.. ++.+.... + ..++.||+||||||++|..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~a~~~~~~--~v~v~~~~-----~--~~~~~~d~lviATGs~p~~~p~ 149 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNK--IKVIQGKASFETDH--RVRVEYGD-----K--EEVVDAEQFIIAAGSEPTELPF 149 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC--cEEEEEEEEEccCC--EEEEeeCC-----C--cEEEECCEEEEeCCCCCCCCCC
Confidence 111 1223344445 77899999998865 44443211 1 1379999999999999988777
Q ss_pred CCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCC
Q 045826 180 PGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEF 259 (584)
Q Consensus 180 pG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~ 259 (584)
++..... +.+..++.. +. ...++++|||||++|+|+|..+.+++
T Consensus 150 ~~~~~~~--v~~~~~~~~-------------~~-------~~~~~vvIIGgG~iG~E~A~~l~~~g-------------- 193 (458)
T PRK06912 150 APFDGKW--IINSKHAMS-------------LP-------SIPSSLLIVGGGVIGCEFASIYSRLG-------------- 193 (458)
T ss_pred CCCCCCe--EEcchHHhC-------------cc-------ccCCcEEEECCCHHHHHHHHHHHHcC--------------
Confidence 7754221 112222211 11 12349999999999999999988754
Q ss_pred cEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCCe--EEEEeCCCCeEEEEecceEEEccCCCCCch
Q 045826 260 TRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKE--ISTKDRATGQISSIPYGMVVWSTGIGTRPV 337 (584)
Q Consensus 260 ~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~ 337 (584)
.+|+++++.+++++.+++++.+.+.+.|++.||+++++++|++++.+. +.+.. +|+..++++|.||+|+|. .|+
T Consensus 194 ~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~--~g~~~~i~~D~vivA~G~--~p~ 269 (458)
T PRK06912 194 TKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY--EGSIQEVNAEFVLVSVGR--KPR 269 (458)
T ss_pred CeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE--CCceEEEEeCEEEEecCC--ccC
Confidence 799999999999999999999999999999999999999999996543 44443 244335999999999994 555
Q ss_pred HHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 338 IMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 338 ~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
+..+ ++..++ +.+| |.||+++|| +.|||||+|||+.
T Consensus 270 ~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~ 308 (458)
T PRK06912 270 VQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIG 308 (458)
T ss_pred CCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCC
Confidence 5433 455565 3444 999999998 8999999999984
No 36
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=1.4e-32 Score=297.58 Aligned_cols=267 Identities=17% Similarity=0.207 Sum_probs=191.7
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC--------CCCCCCccccccc--------------------cc---
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN--------YFAFTPLLPSVTN--------------------GT--- 105 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~--------~~~~~p~~~~~~~--------------------g~--- 105 (584)
.+||||||||+||+.+|..+++.|.+|+|||+.. .++++.+...+.+ |.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4799999999999999999999999999999731 2444432211111 00
Q ss_pred ----cCccc-----------ccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEcc
Q 045826 106 ----VEARS-----------IVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAM 170 (584)
Q Consensus 106 ----~~~~~-----------i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAt 170 (584)
.+... +...+..+++..+ +++++++...+++. +|.+...++ +...+.||+|||||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~--v~~i~G~a~f~~~~--~v~v~~~~g------~~~~~~~d~lVIAT 151 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKK--VNYENAYAEFVDKH--RIKATNKKG------KEKIYSAERFLIAT 151 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCC--cEEEEEEEEEcCCC--EEEEeccCC------CceEEEeCEEEEec
Confidence 01100 1122344556666 77899999999865 565543211 12379999999999
Q ss_pred CCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHh
Q 045826 171 GAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLS 250 (584)
Q Consensus 171 Gs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~ 250 (584)
|++|+.|++||..+..+ +..+...+ + ...++++|||||++|+|+|..+++++
T Consensus 152 Gs~p~~p~ipG~~~~~~---~~~~~~~~-------------~-------~~~~~vvIIGgG~iG~E~A~~l~~~G----- 203 (484)
T TIGR01438 152 GERPRYPGIPGAKELCI---TSDDLFSL-------------P-------YCPGKTLVVGASYVALECAGFLAGIG----- 203 (484)
T ss_pred CCCCCCCCCCCccceee---cHHHhhcc-------------c-------ccCCCEEEECCCHHHHHHHHHHHHhC-----
Confidence 99999999999755422 22211111 1 12248999999999999999999875
Q ss_pred hhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCe-EEEEecceEE
Q 045826 251 KLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQ-ISSIPYGMVV 327 (584)
Q Consensus 251 ~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~-~~~i~~D~vI 327 (584)
.+|+++++ +.+++.+++++.+.+++.|++.||++++++.+++++. +.+.+...+ |+ ..++++|.||
T Consensus 204 ---------~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~-~~~~~~i~~D~vl 272 (484)
T TIGR01438 204 ---------LDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTD-STNGIEEEYDTVL 272 (484)
T ss_pred ---------CcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEec-CCcceEEEeCEEE
Confidence 79999997 5889999999999999999999999999999888853 333332211 32 1249999999
Q ss_pred EccCCCCCchHHHH-HHHhCC--cC-CCceeeCCCCccCCCCCEEEeCcccc
Q 045826 328 WSTGIGTRPVIMDF-MKQIGQ--AN-RRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 328 ~a~G~~~~p~~~~l-~~~~~l--~~-~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
||+|. .|++..+ ++..++ +. +|+|.||+++|| +.|+|||+|||+.
T Consensus 273 ~a~G~--~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~ 321 (484)
T TIGR01438 273 LAIGR--DACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILE 321 (484)
T ss_pred EEecC--CcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEEEecC
Confidence 99995 4555433 456665 33 488999999998 8999999999985
No 37
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.7e-32 Score=304.30 Aligned_cols=266 Identities=18% Similarity=0.259 Sum_probs=192.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccc---------------------cc------cCc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTN---------------------GT------VEA 108 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~---------------------g~------~~~ 108 (584)
..+||||||||+||+++|..|++.|.+|+|||++ .++++.+...+.+ |. .+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 3589999999999999999999999999999987 5665433221110 11 111
Q ss_pred ccccHH------------HHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCC
Q 045826 109 RSIVEP------------IRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANT 176 (584)
Q Consensus 109 ~~i~~~------------~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~ 176 (584)
..+... +..++... ..++++++++..++.....|.+.++. ...+.||+||||||+.|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~v~~~~g~--------~~~~~~d~lviAtGs~p~~ 246 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGN-PAITVLHGEARFKDDQTLIVRLNDGG--------ERVVAFDRCLIATGASPAV 246 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhcc-CCeEEEEEEEEEecCCEEEEEeCCCc--------eEEEEcCEEEEcCCCCCCC
Confidence 111111 11223333 13789999999998765444433221 2379999999999999999
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCC
Q 045826 177 FNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSL 256 (584)
Q Consensus 177 ~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~ 256 (584)
|++||.++.. .+ +..++. .. . ...++++|||+|++|+|+|..+.+++
T Consensus 247 p~i~g~~~~~-~~-~~~~~~----------~~---~-------~~~~~vvViGgG~ig~E~A~~l~~~g----------- 293 (561)
T PRK13748 247 PPIPGLKETP-YW-TSTEAL----------VS---D-------TIPERLAVIGSSVVALELAQAFARLG----------- 293 (561)
T ss_pred CCCCCCCccc-eE-ccHHHh----------hc---c-------cCCCeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 9999976421 11 111111 00 0 12359999999999999999999865
Q ss_pred CCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 257 KEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 257 ~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
.+|+++++. .+++.+++++.+.+.+.|++.||++++++.|++++. +.+.+.. .++ . +++|.||||+|.
T Consensus 294 ---~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~-~~~-~--i~~D~vi~a~G~-- 363 (561)
T PRK13748 294 ---SKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTT-GHG-E--LRADKLLVATGR-- 363 (561)
T ss_pred ---CEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEe-cCC-e--EEeCEEEEccCC--
Confidence 799999984 577888999999999999999999999999999953 3344433 223 3 999999999995
Q ss_pred CchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 335 RPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 335 ~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.|++..+ ++..++ +.+|+|.||+++|| +.|||||+|||+.
T Consensus 364 ~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~ 406 (561)
T PRK13748 364 APNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTD 406 (561)
T ss_pred CcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCC
Confidence 4544333 456666 56789999999999 8999999999985
No 38
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.1e-32 Score=295.02 Aligned_cols=263 Identities=22% Similarity=0.331 Sum_probs=188.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccc--------------------------cccCcc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTN--------------------------GTVEAR 109 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~--------------------------g~~~~~ 109 (584)
..+||||||||+||+++|..|++.|.+|+|||+ +.+++......+.+ ...+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 458999999999999999999999999999999 45665543211100 111112
Q ss_pred cccHHHH------------HHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 110 SIVEPIR------------NIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 110 ~i~~~~~------------~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
++....+ ..+...+ ++++.+++..++.. .+.+ ++ ..+.||+||||||+. .|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~--~v~v-~~----------~~~~~d~lIiATGs~--~p 143 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPK--IDKIKGTARFVDPN--TVEV-NG----------ERIEAKNIVIATGSR--VP 143 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCC--CEEEEEEEEEccCC--EEEE-Cc----------EEEEeCEEEEeCCCC--CC
Confidence 2222221 2223334 66788888877654 5554 22 279999999999998 45
Q ss_pred CCCCccc-ccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCC
Q 045826 178 NTPGVVE-HAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSL 256 (584)
Q Consensus 178 ~ipG~~~-~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~ 256 (584)
.+||... ....+.+..++..+ . ...++++|||+|++|+|+|..+.+++
T Consensus 144 ~ipg~~~~~~~~~~~~~~~~~~-------------~-------~~~k~v~VIGgG~~g~E~A~~l~~~g----------- 192 (460)
T PRK06292 144 PIPGVWLILGDRLLTSDDAFEL-------------D-------KLPKSLAVIGGGVIGLELGQALSRLG----------- 192 (460)
T ss_pred CCCCCcccCCCcEECchHHhCc-------------c-------ccCCeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 6677532 11112222222111 0 23459999999999999999998865
Q ss_pred CCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCC---eEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 257 KEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDK---EISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 257 ~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
.+|+++++.+++++.+++++.+.+++.|+++ |+++++++|++++.+ .+++.. .+|+..++++|.||+++|.
T Consensus 193 ---~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~-~~~~~~~i~~D~vi~a~G~- 266 (460)
T PRK06292 193 ---VKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELE-KGGKTETIEADYVLVATGR- 266 (460)
T ss_pred ---CcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEE-cCCceEEEEeCEEEEccCC-
Confidence 7999999999999999999999999999999 999999999999643 355432 2244345999999999994
Q ss_pred CCchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 334 TRPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 334 ~~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.|++..+ ++..++ +++|+|.||+++|| +.|||||+|||+.
T Consensus 267 -~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~ 309 (460)
T PRK06292 267 -RPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNG 309 (460)
T ss_pred -ccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCC
Confidence 5555432 455666 56789999999999 8999999999985
No 39
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=4.9e-32 Score=290.67 Aligned_cols=263 Identities=22% Similarity=0.400 Sum_probs=206.0
Q ss_pred HHHHhccc--CCCeEEEEcCCCCCCCCC-ccccccccccCc-cc-ccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEE
Q 045826 71 TFLKILKS--NSFEVQVVSPRNYFAFTP-LLPSVTNGTVEA-RS-IVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYC 145 (584)
Q Consensus 71 ~aA~~L~~--~g~~V~lid~~~~~~~~p-~~~~~~~g~~~~-~~-i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~ 145 (584)
+||.+|++ .+++|||||+++++.|.| .++.+..+.... ++ +....+.++.+.++++ +..++|+.||+++++|.+
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~-~~~~~V~~id~~~~~v~~ 79 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDV-KTNHEVIEVNDERQTVVV 79 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeE-EecCEEEEEECCCCEEEE
Confidence 36777774 468999999999999988 477777665542 22 3333456667788554 247899999999999988
Q ss_pred eecCccCCCCCceEEEe--CCEEEEccCCCCCCCCCCCcc-cccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhcc
Q 045826 146 RTTEDRTCGGKEEFALD--YDILVIAMGAQANTFNTPGVV-EHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKI 222 (584)
Q Consensus 146 ~~~~~~~~~~~~~~~i~--yD~LVlAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~ 222 (584)
.+..+ . ..+. ||+||||||++|+.+++||++ ++++.++++.++..++..+.. ..+
T Consensus 80 ~~~~~-----~--~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~---------------~~~ 137 (427)
T TIGR03385 80 RNNKT-----N--ETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK---------------NKV 137 (427)
T ss_pred EECCC-----C--CEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---------------cCC
Confidence 75321 1 1566 999999999999999999986 567778888888877766522 234
Q ss_pred ceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccc-cccccHHHHHHHHHHHHhCCcEEEeCCcee
Q 045826 223 LHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHI-LNMFDKRITASAEEKFKRDGIDLKTGSMVV 301 (584)
Q Consensus 223 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i-l~~~~~~~~~~~~~~L~~~GV~v~~~~~V~ 301 (584)
++|+|||||++|+|+|..|.+.+ .+|+++++.+.+ .+.+++.+.+.+.+.|++.||++++++.|+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 203 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERG--------------KNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVD 203 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEE
Confidence 59999999999999999988754 789999999988 467889999999999999999999999999
Q ss_pred EEcCCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccccc
Q 045826 302 KLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCATIN 377 (584)
Q Consensus 302 ~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~~ 377 (584)
+++.++..+.. .+|++ +++|.+|||+|..+ +. .+++.+++ +.+|+|.||+++|| +.|+|||+|||+..+
T Consensus 204 ~i~~~~~~v~~-~~g~~--i~~D~vi~a~G~~p--~~-~~l~~~gl~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~ 274 (427)
T TIGR03385 204 SIEGEERVKVF-TSGGV--YQADMVILATGIKP--NS-ELAKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAESH 274 (427)
T ss_pred EEecCCCEEEE-cCCCE--EEeCEEEECCCccC--CH-HHHHhcCcccCCCCCEEECCCcEe-CCCCEEEeeeeEEee
Confidence 99766542221 23665 99999999999544 44 45666666 56789999999998 899999999999753
No 40
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=3.6e-31 Score=273.21 Aligned_cols=268 Identities=17% Similarity=0.207 Sum_probs=190.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC----Ccccccccc--ccCcccccHHHHHHHHHcCCcEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT----PLLPSVTNG--TVEARSIVEPIRNIVRKKGMDIQFK 129 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~----p~~~~~~~g--~~~~~~i~~~~~~~~~~~g~~v~~~ 129 (584)
..++|+|||||||||+||..|++.|+++++||... .++. +..+.++.. ......+...+.+....++. ++.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 81 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFET--EII 81 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCC--EEE
Confidence 46899999999999999999999999999998542 2322 212222211 12222345556666766763 456
Q ss_pred EEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHh
Q 045826 130 EAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERA 209 (584)
Q Consensus 130 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~ 209 (584)
.++|..|+..++.+.+.... ..+.||+||+|||+.|+.|++||.+.+.. +.+......
T Consensus 82 ~~~v~~v~~~~~~~~v~~~~---------~~~~~d~vilAtG~~~~~~~i~g~~~~~~--~~v~~~~~~----------- 139 (321)
T PRK10262 82 FDHINKVDLQNRPFRLTGDS---------GEYTCDALIIATGASARYLGLPSEEAFKG--RGVSACATC----------- 139 (321)
T ss_pred eeEEEEEEecCCeEEEEecC---------CEEEECEEEECCCCCCCCCCCCCHHHcCC--CcEEEeecC-----------
Confidence 67788898888877665321 16899999999999999999999643211 111000000
Q ss_pred cCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHh
Q 045826 210 SLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKR 289 (584)
Q Consensus 210 ~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~ 289 (584)
......+++++|||+|++|+|+|..|++.+ .+|+++++.+.+. .++.+.+.+.+.|++
T Consensus 140 ------~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~--------------~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~ 197 (321)
T PRK10262 140 ------DGFFYRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR--AEKILIKRLMDKVEN 197 (321)
T ss_pred ------CHHHcCCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEECCccC--CCHHHHHHHHhhccC
Confidence 011135679999999999999999999865 7999999988753 346678888999999
Q ss_pred CCcEEEeCCceeEEcCC-----eEEEEeCC-CCeEEEEecceEEEccCCCCCchHHHHHHHhCC-cCCCceeeCC-----
Q 045826 290 DGIDLKTGSMVVKLSDK-----EISTKDRA-TGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ-ANRRVLATDE----- 357 (584)
Q Consensus 290 ~GV~v~~~~~V~~v~~~-----~v~~~~~~-~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l-~~~g~i~Vd~----- 357 (584)
.||++++++.+++++++ ++++.+.. +++..++++|.|||++|.+++. .+... ++ .++|+|.||+
T Consensus 198 ~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~---~l~~~-~l~~~~g~i~vd~~~~~~ 273 (321)
T PRK10262 198 GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNT---AIFEG-QLELENGYIKVQSGIHGN 273 (321)
T ss_pred CCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccCh---hHhhc-cccccCCEEEECCCCccc
Confidence 99999999999999765 25555422 2333469999999999965544 23322 33 3568899997
Q ss_pred CCccCCCCCEEEeCcccc
Q 045826 358 WLRVEGCESVYALGDCAT 375 (584)
Q Consensus 358 ~l~~~~~~~VfaiGD~a~ 375 (584)
+++| +.|+|||+|||+.
T Consensus 274 ~~~t-~~~~VyA~GD~~~ 290 (321)
T PRK10262 274 ATQT-SIPGVFAAGDVMD 290 (321)
T ss_pred cccc-CCCCEEECeeccC
Confidence 5677 8999999999986
No 41
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.6e-31 Score=286.19 Aligned_cols=269 Identities=19% Similarity=0.296 Sum_probs=188.9
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcC------CCCCCCCCccccccc---------------------cc----
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSP------RNYFAFTPLLPSVTN---------------------GT---- 105 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~------~~~~~~~p~~~~~~~---------------------g~---- 105 (584)
.+||+|||||+||+++|.++++.|.+|+|||+ ....+++.....+.+ |.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 57999999999999999999999999999998 233444332221110 10
Q ss_pred --cCccccc-----------HHHHHHHHHcCCcEEEEEEEEEEEecC--CCEEEEeecCccCCCCCceEEEeCCEEEEcc
Q 045826 106 --VEARSIV-----------EPIRNIVRKKGMDIQFKEAECYKIDAE--KKQIYCRTTEDRTCGGKEEFALDYDILVIAM 170 (584)
Q Consensus 106 --~~~~~i~-----------~~~~~~~~~~g~~v~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAt 170 (584)
.+...+. ..+..+++..+ ++++.+++..++.. ..+|.+.... ..+++||+|||||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~~~~~~~~~~v~v~~~~--------~~~~~~d~lViAT 153 (475)
T PRK06327 84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNK--ITVLKGRGSFVGKTDAGYEIKVTGED--------ETVITAKHVIIAT 153 (475)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEEEEEEecCCCCCCEEEEecCC--------CeEEEeCEEEEeC
Confidence 0000001 12333444455 77889999888743 4466664321 1279999999999
Q ss_pred CCCCCCCC-CCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhH
Q 045826 171 GAQANTFN-TPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDL 249 (584)
Q Consensus 171 Gs~~~~~~-ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~ 249 (584)
|+.|..++ ++...... .+..++.. +. ..+++++|||+|++|+|+|..+.+++
T Consensus 154 Gs~p~~~p~~~~~~~~~---~~~~~~~~-------------~~-------~~~~~vvVvGgG~~g~E~A~~l~~~g---- 206 (475)
T PRK06327 154 GSEPRHLPGVPFDNKII---LDNTGALN-------------FT-------EVPKKLAVIGAGVIGLELGSVWRRLG---- 206 (475)
T ss_pred CCCCCCCCCCCCCCceE---ECcHHHhc-------------cc-------ccCCeEEEECCCHHHHHHHHHHHHcC----
Confidence 99986442 22111111 11111111 00 12359999999999999999988764
Q ss_pred hhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCC--eEEEEeC-CCCeEEEEecceE
Q 045826 250 SKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDK--EISTKDR-ATGQISSIPYGMV 326 (584)
Q Consensus 250 ~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~-~~G~~~~i~~D~v 326 (584)
.+|+++++.+++++.+++++.+.+.+.|+++||+++++++|++++.+ ++.+... .+|++.++++|.|
T Consensus 207 ----------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~v 276 (475)
T PRK06327 207 ----------AEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKL 276 (475)
T ss_pred ----------CeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEE
Confidence 79999999999999999999999999999999999999999999643 4443311 2354346999999
Q ss_pred EEccCCCCCchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 327 VWSTGIGTRPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 327 I~a~G~~~~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
++++|. .|++..+ ++.+++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 277 l~a~G~--~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~ 325 (475)
T PRK06327 277 IVSIGR--VPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVR 325 (475)
T ss_pred EEccCC--ccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEEEEeccC
Confidence 999995 4444333 455565 67789999999998 8999999999985
No 42
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.98 E-value=1.4e-30 Score=283.18 Aligned_cols=263 Identities=18% Similarity=0.255 Sum_probs=186.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC--------CCCCCCccccccc---------------------c---
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN--------YFAFTPLLPSVTN---------------------G--- 104 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~--------~~~~~p~~~~~~~---------------------g--- 104 (584)
++||+|||||+||++||..|++.|.+|+|||+++ .++++.+...+.+ |
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999999632 2455432221111 1
Q ss_pred --ccCcccccHHHHHH-----------HHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccC
Q 045826 105 --TVEARSIVEPIRNI-----------VRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMG 171 (584)
Q Consensus 105 --~~~~~~i~~~~~~~-----------~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtG 171 (584)
..+..++....... ++.. .+.++++++...+. ++|.+.+.. ....+.||+||||||
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~v~~i~g~a~~~~~--~~v~v~~~~-------~~~~i~~d~lIIATG 153 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSS--KVEYINGLAKLKDE--HTVSYGDNS-------QEETITAKYILIATG 153 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhc--CcEEEEEEEEEccC--CEEEEeeCC-------CceEEECCEEEEecC
Confidence 11222222222222 2223 37788888887654 466665321 113799999999999
Q ss_pred CCCCCC-CCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHh
Q 045826 172 AQANTF-NTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLS 250 (584)
Q Consensus 172 s~~~~~-~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~ 250 (584)
+.|..| .+||..+..+ +..+...+ . ...++++|||||++|+|+|..|++++
T Consensus 154 s~p~~p~~i~G~~~~~~---~~~~~~~~-------------~-------~~~~~vvIIGgG~iG~E~A~~l~~~G----- 205 (499)
T PTZ00052 154 GRPSIPEDVPGAKEYSI---TSDDIFSL-------------S-------KDPGKTLIVGASYIGLETAGFLNELG----- 205 (499)
T ss_pred CCCCCCCCCCCccceee---cHHHHhhh-------------h-------cCCCeEEEECCCHHHHHHHHHHHHcC-----
Confidence 999987 4898754322 22222111 0 12349999999999999999999875
Q ss_pred hhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEE
Q 045826 251 KLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVW 328 (584)
Q Consensus 251 ~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~ 328 (584)
.+|+++++ +.+++.+++++.+.+.+.|++.||++++++.+++++. +.+.+.. .+|++ +++|.|||
T Consensus 206 ---------~~Vtli~~-~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~-~~g~~--i~~D~vl~ 272 (499)
T PTZ00052 206 ---------FDVTVAVR-SIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLF-SDGTT--ELFDTVLY 272 (499)
T ss_pred ---------CcEEEEEc-CcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEE-CCCCE--EEcCEEEE
Confidence 79999987 4678899999999999999999999999999988853 3344332 23665 89999999
Q ss_pred ccCCCCCchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 329 STGIGTRPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 329 a~G~~~~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
++|. .|++..+ ++.+++ +.+|++.+++. +| +.|+|||+|||+.
T Consensus 273 a~G~--~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~ 318 (499)
T PTZ00052 273 ATGR--KPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVE 318 (499)
T ss_pred eeCC--CCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecC
Confidence 9995 5555433 355665 56788777776 77 8999999999984
No 43
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.98 E-value=1e-30 Score=288.62 Aligned_cols=270 Identities=16% Similarity=0.243 Sum_probs=189.4
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCC-CCCCCCCccccccc-----------------------cc-------
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPR-NYFAFTPLLPSVTN-----------------------GT------- 105 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~-~~~~~~p~~~~~~~-----------------------g~------- 105 (584)
.+||+|||+|+||+.+|..+++.|.+|+|||+. ..++++.....+.+ |.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 579999999999999999999999999999974 24555433222111 10
Q ss_pred -----------------cCccccc-----------HHHHHHHHHcCC-----cEEEEEEEEEEEecCCCEEEEeecCccC
Q 045826 106 -----------------VEARSIV-----------EPIRNIVRKKGM-----DIQFKEAECYKIDAEKKQIYCRTTEDRT 152 (584)
Q Consensus 106 -----------------~~~~~i~-----------~~~~~~~~~~g~-----~v~~~~~~v~~id~~~~~v~~~~~~~~~ 152 (584)
++...+. ..+...++..++ .++++.+....+++. +|.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~--~v~v~~~g--- 270 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKN--TIKSEKSG--- 270 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCC--eEEEccCC---
Confidence 0111111 112233333321 367788888777654 45543211
Q ss_pred CCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCCh
Q 045826 153 CGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGP 232 (584)
Q Consensus 153 ~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~ 232 (584)
.++.||+||||||+.|..|++++.... .+.+.+++..+. ..+++++|||||+
T Consensus 271 ------~~i~ad~lIIATGS~P~~P~~~~~~~~--~V~ts~d~~~l~--------------------~lpk~VvIVGgG~ 322 (659)
T PTZ00153 271 ------KEFKVKNIIIATGSTPNIPDNIEVDQK--SVFTSDTAVKLE--------------------GLQNYMGIVGMGI 322 (659)
T ss_pred ------EEEECCEEEEcCCCCCCCCCCCCCCCC--cEEehHHhhhhh--------------------hcCCceEEECCCH
Confidence 279999999999999988876664321 122334433321 1134999999999
Q ss_pred hHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHH-HhCCcEEEeCCceeEEcCCe----
Q 045826 233 TGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKF-KRDGIDLKTGSMVVKLSDKE---- 307 (584)
Q Consensus 233 ~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L-~~~GV~v~~~~~V~~v~~~~---- 307 (584)
+|+|+|..+..++ .+|+++++.+++++.+++++.+.+.+.+ +++||++++++.|++++.+.
T Consensus 323 iGvE~A~~l~~~G--------------~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~ 388 (659)
T PTZ00153 323 IGLEFMDIYTALG--------------SEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQP 388 (659)
T ss_pred HHHHHHHHHHhCC--------------CeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE
Confidence 9999999888765 7999999999999999999999999876 67999999999999996532
Q ss_pred EEEEeC--C----CC------eEEEEecceEEEccCCCCCchHHHH-HHHhCC-cCCCceeeCCCCccCC-----CCCEE
Q 045826 308 ISTKDR--A----TG------QISSIPYGMVVWSTGIGTRPVIMDF-MKQIGQ-ANRRVLATDEWLRVEG-----CESVY 368 (584)
Q Consensus 308 v~~~~~--~----~G------~~~~i~~D~vI~a~G~~~~p~~~~l-~~~~~l-~~~g~i~Vd~~l~~~~-----~~~Vf 368 (584)
+.+... . ++ +..++++|.||||+| ..|++..+ ++.+++ .++|+|.||++|||.. .|+||
T Consensus 389 v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG--r~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IY 466 (659)
T PTZ00153 389 VIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG--RKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIF 466 (659)
T ss_pred EEEEEeccccccccccccccccceEEEcCEEEEEEC--cccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEE
Confidence 444321 1 11 112599999999999 55666545 466666 3468999999999942 69999
Q ss_pred EeCcccc
Q 045826 369 ALGDCAT 375 (584)
Q Consensus 369 aiGD~a~ 375 (584)
|+|||+.
T Consensus 467 AiGDv~g 473 (659)
T PTZ00153 467 CIGDANG 473 (659)
T ss_pred EEEecCC
Confidence 9999974
No 44
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.97 E-value=9.9e-31 Score=287.94 Aligned_cols=265 Identities=20% Similarity=0.279 Sum_probs=183.7
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccc-cc--cccc--cCcccccHHHHHHHHHcCCcEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLP-SV--TNGT--VEARSIVEPIRNIVRKKGMDIQFKEA 131 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~-~~--~~g~--~~~~~i~~~~~~~~~~~g~~v~~~~~ 131 (584)
.+||+|||||||||+||.+|++.|++|+|||++. +++..... .. ..+. ....++...++..+++.+ ++++.+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~g--v~~~~~ 80 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFG--VKFLQA 80 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcC--CEEecc
Confidence 5899999999999999999999999999999874 44332211 11 0111 122355666777777777 556788
Q ss_pred EEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcC
Q 045826 132 ECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASL 211 (584)
Q Consensus 132 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~ 211 (584)
+|+.++.+++...+.... ..+.||+||+|||+.|+.+++||..++.. ..+.....
T Consensus 81 ~V~~i~~~~~~~~V~~~~---------g~~~a~~lVlATGa~p~~~~ipG~~~~~~--~~v~~~~~-------------- 135 (555)
T TIGR03143 81 EVLDVDFDGDIKTIKTAR---------GDYKTLAVLIATGASPRKLGFPGEEEFTG--RGVAYCAT-------------- 135 (555)
T ss_pred EEEEEEecCCEEEEEecC---------CEEEEeEEEECCCCccCCCCCCCHHHhCC--ceEEEEee--------------
Confidence 999999876544443322 16889999999999999999999643210 00000000
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCC
Q 045826 212 PNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDG 291 (584)
Q Consensus 212 ~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~G 291 (584)
. ......+++|+|||||++|+|+|..|.+++ .+|+++++.+.+.. .... ..+.++++|
T Consensus 136 --~-~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~~~~--~~~~---~~~~~~~~g 193 (555)
T TIGR03143 136 --C-DGEFFTGMDVFVIGGGFAAAEEAVFLTRYA--------------SKVTVIVREPDFTC--AKLI---AEKVKNHPK 193 (555)
T ss_pred --c-ChhhcCCCEEEEECCCHHHHHHHHHHHccC--------------CEEEEEEeCCcccc--CHHH---HHHHHhCCC
Confidence 0 001134679999999999999999988754 79999999887532 2222 233345579
Q ss_pred cEEEeCCceeEEcCCe----EEEEeCCCCeEEEE--ecce----EEEccCCCCCchHHHHHHH-hCCcCCCceeeCCCCc
Q 045826 292 IDLKTGSMVVKLSDKE----ISTKDRATGQISSI--PYGM----VVWSTGIGTRPVIMDFMKQ-IGQANRRVLATDEWLR 360 (584)
Q Consensus 292 V~v~~~~~V~~v~~~~----v~~~~~~~G~~~~i--~~D~----vI~a~G~~~~p~~~~l~~~-~~l~~~g~i~Vd~~l~ 360 (584)
|++++++.|+++.+++ +.+.+..+|+..++ ++|. |||++|+.++ . .+++. +.++.+|+|.||++++
T Consensus 194 V~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn--~-~l~~~~l~l~~~G~I~vd~~~~ 270 (555)
T TIGR03143 194 IEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPS--S-ELFKGVVELDKRGYIPTNEDME 270 (555)
T ss_pred cEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCC--h-hHHhhhcccCCCCeEEeCCccc
Confidence 9999999999997653 23334345654333 4776 9999996544 4 23332 3346679999999999
Q ss_pred cCCCCCEEEeCcccc
Q 045826 361 VEGCESVYALGDCAT 375 (584)
Q Consensus 361 ~~~~~~VfaiGD~a~ 375 (584)
| +.|+|||+|||+.
T Consensus 271 T-s~p~IyAaGDv~~ 284 (555)
T TIGR03143 271 T-NVPGVYAAGDLRP 284 (555)
T ss_pred c-CCCCEEEceeccC
Confidence 9 8999999999974
No 45
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.97 E-value=5.5e-30 Score=275.77 Aligned_cols=261 Identities=20% Similarity=0.263 Sum_probs=183.6
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc--------------------------cCccc
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT--------------------------VEARS 110 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~--------------------------~~~~~ 110 (584)
.+||||||+|+||..+|..+ .|.+|+|||++ .++++.+...+.+.+ ++...
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence 47999999999999987554 59999999985 355543322221111 11111
Q ss_pred cc--------HHHH----HH-HHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 111 IV--------EPIR----NI-VRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 111 i~--------~~~~----~~-~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+. ..+. .. +......++++.++...++ .++|.+.++. ++.||+||||||++|..|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~V~~~~g~----------~~~~d~lIiATGs~p~~p 146 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVG--PRTLRTGDGE----------EITGDQIVIAAGSRPYIP 146 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEec--CCEEEECCCc----------EEEeCEEEEEECCCCCCC
Confidence 11 1111 11 1100024778888877774 5577765432 799999999999999877
Q ss_pred CCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCC
Q 045826 178 NTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLK 257 (584)
Q Consensus 178 ~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~ 257 (584)
++++. ....+.+.+++.++.. ..++++|||+|++|+|+|..+.+++
T Consensus 147 ~~~~~--~~~~~~~~~~~~~l~~--------------------~~k~vvVIGgG~ig~E~A~~l~~~G------------ 192 (452)
T TIGR03452 147 PAIAD--SGVRYHTNEDIMRLPE--------------------LPESLVIVGGGYIAAEFAHVFSALG------------ 192 (452)
T ss_pred CCCCC--CCCEEEcHHHHHhhhh--------------------cCCcEEEECCCHHHHHHHHHHHhCC------------
Confidence 64332 1223455555544321 2349999999999999999998764
Q ss_pred CCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCCCC
Q 045826 258 EFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIGTR 335 (584)
Q Consensus 258 ~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 335 (584)
.+|+++++.+++++.+++++.+.+.+.+ +.||++++++.|++++. +++.+.. .+|++ +++|.|++++|. .
T Consensus 193 --~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~-~~g~~--i~~D~vl~a~G~--~ 264 (452)
T TIGR03452 193 --TRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTL-DDGST--VTADVLLVATGR--V 264 (452)
T ss_pred --CcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEE-cCCCE--EEcCEEEEeecc--C
Confidence 7999999999999999999988887655 46899999999999963 3455443 33654 999999999995 4
Q ss_pred chHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 336 PVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 336 p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
|+...+ ++..++ +.+|+|.||+++|| +.|+|||+|||+.
T Consensus 265 pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~ 306 (452)
T TIGR03452 265 PNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSS 306 (452)
T ss_pred cCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccC
Confidence 444333 455565 56789999999997 8999999999985
No 46
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.97 E-value=1.6e-30 Score=284.30 Aligned_cols=268 Identities=21% Similarity=0.301 Sum_probs=188.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCc----cccccc-cccCcccccHHHHHHHHHcCCcEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPL----LPSVTN-GTVEARSIVEPIRNIVRKKGMDIQFK 129 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~----~~~~~~-g~~~~~~i~~~~~~~~~~~g~~v~~~ 129 (584)
...+||+|||||+||++||..|++.|++|+||+.. +++++. ++.+.. ......++...+.+.++++++++ +.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i-~~ 286 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDL-ME 286 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeE-Ec
Confidence 44689999999999999999999999999999853 444332 111111 11223355666777788887554 23
Q ss_pred EEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHh
Q 045826 130 EAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERA 209 (584)
Q Consensus 130 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~ 209 (584)
..+|+.++.+.+.+.+....+ ..+.||+||+|+|+.++.+++||..++.. ..+.....
T Consensus 287 ~~~V~~I~~~~~~~~v~~~~g--------~~i~~d~lIlAtGa~~~~~~ipG~~~~~~--~~v~~~~~------------ 344 (515)
T TIGR03140 287 NQRAKKIETEDGLIVVTLESG--------EVLKAKSVIVATGARWRKLGVPGEKEYIG--KGVAYCPH------------ 344 (515)
T ss_pred CCEEEEEEecCCeEEEEECCC--------CEEEeCEEEECCCCCcCCCCCCCHHHcCC--CeEEEeec------------
Confidence 568999987765444433221 17999999999999999899999643210 00000000
Q ss_pred cCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHh
Q 045826 210 SLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKR 289 (584)
Q Consensus 210 ~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~ 289 (584)
.+ .....+++|+|||||++|+|+|..|+.++ .+|+++++.+.+.. ...+.+.|++
T Consensus 345 ----~~-~~~~~~k~VvViGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~l~~------~~~l~~~l~~ 399 (515)
T TIGR03140 345 ----CD-GPFFKGKDVAVIGGGNSGIEAAIDLAGIV--------------RHVTVLEFADELKA------DKVLQDKLKS 399 (515)
T ss_pred ----cC-hhhcCCCEEEEECCcHHHHHHHHHHHhcC--------------cEEEEEEeCCcCCh------hHHHHHHHhc
Confidence 00 00124569999999999999999998764 69999998887642 2345677776
Q ss_pred -CCcEEEeCCceeEEcCC-----eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHH-hCCcCCCceeeCCCCccC
Q 045826 290 -DGIDLKTGSMVVKLSDK-----EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQ-IGQANRRVLATDEWLRVE 362 (584)
Q Consensus 290 -~GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~l~~~g~i~Vd~~l~~~ 362 (584)
.||++++++.+++++++ ++++.+..+|+..++++|.|+|++|..+ ++. +++. +.++.+|+|.||+++||
T Consensus 400 ~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P--n~~-~l~~~~~~~~~G~I~vd~~~~T- 475 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP--NTE-WLKDAVELNRRGEIVIDERGRT- 475 (515)
T ss_pred CCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC--Cch-HHhhhcccCCCCeEEECCCCCC-
Confidence 69999999999999765 2555554345444699999999999544 443 3333 33366789999999998
Q ss_pred CCCCEEEeCccccc
Q 045826 363 GCESVYALGDCATI 376 (584)
Q Consensus 363 ~~~~VfaiGD~a~~ 376 (584)
+.|+|||+|||+..
T Consensus 476 s~p~IyAaGDv~~~ 489 (515)
T TIGR03140 476 SVPGIFAAGDVTTV 489 (515)
T ss_pred CCCCEEEcccccCC
Confidence 89999999999864
No 47
>PRK12831 putative oxidoreductase; Provisional
Probab=99.97 E-value=1.6e-30 Score=279.98 Aligned_cols=273 Identities=19% Similarity=0.178 Sum_probs=178.3
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEE
Q 045826 54 EFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAEC 133 (584)
Q Consensus 54 ~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v 133 (584)
..+.++|+|||||+|||++|..|++.|++|+|+|+.+..++.. .+.++...+..+++.....+.+++.++++ ..+..
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l-~~gip~~~l~~~~~~~~~~~~~~~~gv~i--~~~~~ 213 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVL-VYGIPEFRLPKETVVKKEIENIKKLGVKI--ETNVV 213 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCee-eecCCCccCCccHHHHHHHHHHHHcCCEE--EcCCE
Confidence 4467899999999999999999999999999999987765532 22333223333335555667777788554 33332
Q ss_pred EEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCC-CCCCCCCCCcc-cccccccCHHHHHHHHHHHHHHHHHhcC
Q 045826 134 YKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGA-QANTFNTPGVV-EHAHFLKEVEHAQRIRRSVIDCFERASL 211 (584)
Q Consensus 134 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs-~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~l~~~~~~~~~ 211 (584)
. .+.+.+.+.. ..+.||+||||||+ .|+.+++||.+ ++++. ..+.....+.... ..
T Consensus 214 v-----~~~v~~~~~~---------~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~---~~~~l~~~~~~~~----~~- 271 (464)
T PRK12831 214 V-----GKTVTIDELL---------EEEGFDAVFIGSGAGLPKFMGIPGENLNGVFS---ANEFLTRVNLMKA----YK- 271 (464)
T ss_pred E-----CCcCCHHHHH---------hccCCCEEEEeCCCCCCCCCCCCCcCCcCcEE---HHHHHHHHHhccc----cc-
Confidence 2 1222222110 14679999999999 58888999975 23332 2222111110000 00
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcc-ccccccHHHHHHHHHHHHhC
Q 045826 212 PNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDH-ILNMFDKRITASAEEKFKRD 290 (584)
Q Consensus 212 ~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~L~~~ 290 (584)
... ......+++|+|||||++|+|+|..+.+++ .+|+++++.+. -++....++ +.+++.
T Consensus 272 ~~~-~~~~~~gk~VvVIGgG~va~d~A~~l~r~G--------------a~Vtlv~r~~~~~m~a~~~e~-----~~a~~e 331 (464)
T PRK12831 272 PEY-DTPIKVGKKVAVVGGGNVAMDAARTALRLG--------------AEVHIVYRRSEEELPARVEEV-----HHAKEE 331 (464)
T ss_pred ccc-cCcccCCCeEEEECCcHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCCHHHH-----HHHHHc
Confidence 000 001135679999999999999999999876 67999998664 233322222 346778
Q ss_pred CcEEEeCCceeEEcC--Ce----EEEEeC------C---------CCeEEEEecceEEEccCCCCCchHHHHHHH-hCC-
Q 045826 291 GIDLKTGSMVVKLSD--KE----ISTKDR------A---------TGQISSIPYGMVVWSTGIGTRPVIMDFMKQ-IGQ- 347 (584)
Q Consensus 291 GV~v~~~~~V~~v~~--~~----v~~~~~------~---------~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~l- 347 (584)
||++++++.++++.. ++ +.+... . +|++.++++|+||+|+|+.++ . .++.. .++
T Consensus 332 GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~--~-~~~~~~~gl~ 408 (464)
T PRK12831 332 GVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPN--P-LISSTTKGLK 408 (464)
T ss_pred CCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCC--h-hhhcccCCce
Confidence 999999999999853 22 333210 0 244446999999999996544 3 34433 454
Q ss_pred -cCCCceeeCCC-CccCCCCCEEEeCcccc
Q 045826 348 -ANRRVLATDEW-LRVEGCESVYALGDCAT 375 (584)
Q Consensus 348 -~~~g~i~Vd~~-l~~~~~~~VfaiGD~a~ 375 (584)
+.+|.|.||++ ++| +.|+|||+|||+.
T Consensus 409 ~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~ 437 (464)
T PRK12831 409 INKRGCIVADEETGLT-SKEGVFAGGDAVT 437 (464)
T ss_pred ECCCCcEEECCCCCcc-CCCCEEEeCCCCC
Confidence 56789999987 888 8999999999975
No 48
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.97 E-value=1.4e-30 Score=280.04 Aligned_cols=271 Identities=18% Similarity=0.183 Sum_probs=178.6
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEE
Q 045826 54 EFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAEC 133 (584)
Q Consensus 54 ~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v 133 (584)
..+.++|+|||||+||+++|..|++.|++|+|||+++..++.. .+.++.... +.++.....+.+.+.+ +++..+.+
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l-~~gip~~~~-~~~~~~~~~~~l~~~g--v~~~~~~~ 205 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV-TYGIPEFRL-PKEIVVTEIKTLKKLG--VTFRMNFL 205 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe-eecCCCccC-CHHHHHHHHHHHHhCC--cEEEeCCc
Confidence 3456899999999999999999999999999999987665432 222222222 2344444555667777 44554443
Q ss_pred EEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCC-CCCCCCCCCcc-cccccccCHHHHHHHHHHHHHHHHHhcC
Q 045826 134 YKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGA-QANTFNTPGVV-EHAHFLKEVEHAQRIRRSVIDCFERASL 211 (584)
Q Consensus 134 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs-~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~l~~~~~~~~~ 211 (584)
. .+.+.+.+. ...||+||||||+ .|..+++||.+ .+++ +..+ +..... .......
T Consensus 206 v-----~~~v~~~~~-----------~~~yd~viiAtGa~~p~~~~ipG~~~~gv~---~~~~---~l~~~~-~~~~~~~ 262 (449)
T TIGR01316 206 V-----GKTATLEEL-----------FSQYDAVFIGTGAGLPKLMNIPGEELCGVY---SAND---FLTRAN-LMKAYEF 262 (449)
T ss_pred c-----CCcCCHHHH-----------HhhCCEEEEeCCCCCCCcCCCCCCCCCCcE---EHHH---HHHHHh-hcccccc
Confidence 2 223333211 3569999999998 68888999964 2222 2222 111110 0000000
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccc-cccccHHHHHHHHHHHHhC
Q 045826 212 PNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHI-LNMFDKRITASAEEKFKRD 290 (584)
Q Consensus 212 ~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i-l~~~~~~~~~~~~~~L~~~ 290 (584)
+.. ......+++|+|||||++|+|+|..+.+++ .+|+++++.++. ++.. ....+.+++.
T Consensus 263 ~~~-~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G--------------~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~ 322 (449)
T TIGR01316 263 PHA-DTPVYAGKSVVVIGGGNTAVDSARTALRLG--------------AEVHCLYRRTREDMTAR-----VEEIAHAEEE 322 (449)
T ss_pred ccc-CCcccCCCeEEEECCCHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCC-----HHHHHHHHhC
Confidence 000 001135679999999999999999999875 689999988652 2221 2233667889
Q ss_pred CcEEEeCCceeEEcC--C-e---EEEEe------CCC---------CeEEEEecceEEEccCCCCCchHHHHHHHhCC--
Q 045826 291 GIDLKTGSMVVKLSD--K-E---ISTKD------RAT---------GQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ-- 347 (584)
Q Consensus 291 GV~v~~~~~V~~v~~--~-~---v~~~~------~~~---------G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l-- 347 (584)
||+|++++.++++.. + . +++.. ..+ |+..++++|.||+|+|+.++ . .+++..++
T Consensus 323 GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~--~-~~l~~~gl~~ 399 (449)
T TIGR01316 323 GVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSN--P-IMAETTRLKT 399 (449)
T ss_pred CCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCC--c-hhhhccCccc
Confidence 999999999999853 2 2 33331 011 33346999999999996554 3 45565565
Q ss_pred cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 348 ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 348 ~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
+.+|+|.||+++|| +.|+|||+|||+.
T Consensus 400 ~~~G~i~vd~~~~T-s~~~VfA~GD~~~ 426 (449)
T TIGR01316 400 SERGTIVVDEDQRT-SIPGVFAGGDIIL 426 (449)
T ss_pred CCCCeEEeCCCCcc-CCCCEEEecCCCC
Confidence 56789999999998 8999999999985
No 49
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=1.1e-29 Score=288.22 Aligned_cols=321 Identities=18% Similarity=0.193 Sum_probs=211.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
.+.++|+|||||||||+||..|++.|++|+|||+++..++.. .+.++.... +.+......+.+...| +++..+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l-~~~IP~~rl-p~e~l~~~ie~l~~~G--Ve~~~g~-- 608 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVV-KNIIPEFRI-SAESIQKDIELVKFHG--VEFKYGC-- 608 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCcee-eecccccCC-CHHHHHHHHHHHHhcC--cEEEEec--
Confidence 356899999999999999999999999999999998776643 222222222 2233333445566677 4444432
Q ss_pred EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCC-CCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCC
Q 045826 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQA-NTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPN 213 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 213 (584)
+. .+.+... ....||+||||||+.+ ..+++||..+.++ ..+ .+...+.+.
T Consensus 609 --~~---d~~ve~l----------~~~gYDaVIIATGA~~~~~l~I~G~~~~v~--~av----efL~~~~~~-------- 659 (1012)
T TIGR03315 609 --SP---DLTVAEL----------KNQGYKYVILAIGAWKHGPLRLEGGGERVL--KSL----EFLRAFKEG-------- 659 (1012)
T ss_pred --cc---ceEhhhh----------hcccccEEEECCCCCCCCCCCcCCCCccee--eHH----HHHHHhhcc--------
Confidence 11 1122211 1567999999999984 4557777533221 111 111111100
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCc-cccccccHHHHHHHHHHHHhCCc
Q 045826 214 LSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGD-HILNMFDKRITASAEEKFKRDGI 292 (584)
Q Consensus 214 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~il~~~~~~~~~~~~~~L~~~GV 292 (584)
+.....+++|+|||||++|+|+|..+.+.. ...+|+++++.+ ..+|..+.++. + +.+.||
T Consensus 660 --~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~------------Ga~kVtLVyRr~~~~Mpa~~eEl~----~-aleeGV 720 (1012)
T TIGR03315 660 --PTINPLGKHVVVVGGGNTAMDAARAALRVP------------GVEKVTVVYRRTKRYMPASREELE----E-ALEDGV 720 (1012)
T ss_pred --ccccccCCeEEEECCCHHHHHHHHHHHHhC------------CCceEEEEEccCccccccCHHHHH----H-HHHcCC
Confidence 011135779999999999999999887641 014899999876 45666555442 2 235799
Q ss_pred EEEeCCceeEEcCCeEEEEe--------------CCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cCCCceeeC
Q 045826 293 DLKTGSMVVKLSDKEISTKD--------------RATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--ANRRVLATD 356 (584)
Q Consensus 293 ~v~~~~~V~~v~~~~v~~~~--------------~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~~g~i~Vd 356 (584)
++++++.+++++++.+++.. ..+|+..++++|+||+|+|+.++ . .+++..++ +.+|++.||
T Consensus 721 e~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pn--t-~lle~~GL~ld~~G~I~VD 797 (1012)
T TIGR03315 721 DFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVD--T-DLLQKNGIPLDEYGWPVVN 797 (1012)
T ss_pred EEEeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCC--h-HHHHhcCcccCCCCCEEeC
Confidence 99999999998865544321 11355557999999999996544 3 45566665 567899999
Q ss_pred CC-CccCCCCCEEEeCccccccccchhhhHHHHhhhccccCCCCcchhhhHHHHHhhhccCchhHHHHhHhhhhhHHHHh
Q 045826 357 EW-LRVEGCESVYALGDCATINQRKVMEDISAIFSKADKNNTGKLNVKDLKEVVKDICERYPQVEIYLNKKQLKNINVLL 435 (584)
Q Consensus 357 ~~-l~~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~a~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (584)
++ ++| +.|+|||+|||+..
T Consensus 798 ~~~~~T-s~pgVFAaGD~a~G----------------------------------------------------------- 817 (1012)
T TIGR03315 798 QATGET-NITNVFVIGDANRG----------------------------------------------------------- 817 (1012)
T ss_pred CCCCcc-CCCCEEEEeCcCCC-----------------------------------------------------------
Confidence 86 777 89999999999742
Q ss_pred hhccCCcccccccccHHHHHHHhhhhcccCCCCCcchhhHHHHHHHHHHHHhhhhhcccCCCCCccccCCCCCCCCCCee
Q 045826 436 KNAEEDPKKASMEFDIEKFKKALSEVDSQMKHLPATAQVAAQEGAYLANCFNRMEQCEKNPEGPLRFRGAGRHRFHPFRY 515 (584)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ta~~A~~qg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 515 (584)
|.++..|++||+.+|.+|.+....+.... ....-......+|.|
T Consensus 818 ---------------------------------P~tVv~AIaqGr~AA~nIl~~~~~~~~~~---~~~~~~~~~~~~~~Y 861 (1012)
T TIGR03315 818 ---------------------------------PATIVEAIADGRKAANAILSREGLNSDVD---KVFPINEEVRLAEVY 861 (1012)
T ss_pred ---------------------------------ccHHHHHHHHHHHHHHHHhccccCCcccc---cccccccccccchhh
Confidence 67788999999999999976543322110 000001123458999
Q ss_pred ccccceeEeCCcc
Q 045826 516 KHFGQFAPLGGEE 528 (584)
Q Consensus 516 ~~~G~~~~lG~~~ 528 (584)
..+|.|+..+...
T Consensus 862 ~~kG~la~~~~~~ 874 (1012)
T TIGR03315 862 QKKGILVIDDHSC 874 (1012)
T ss_pred ccCcceeccCccc
Confidence 9999999877544
No 50
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.97 E-value=1.7e-29 Score=276.40 Aligned_cols=267 Identities=22% Similarity=0.312 Sum_probs=190.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCc----cccccc-cccCcccccHHHHHHHHHcCCcEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPL----LPSVTN-GTVEARSIVEPIRNIVRKKGMDIQFK 129 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~----~~~~~~-g~~~~~~i~~~~~~~~~~~g~~v~~~ 129 (584)
...+||||||||+||+++|.+|++.|++|+||++. ++++.. ++.... ......++...+...++++++++ +.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i-~~ 285 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDI-MN 285 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEE-Ec
Confidence 34689999999999999999999999999999874 333221 111111 11233456677888888888655 33
Q ss_pred EEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCccccccc-ccCHHHHHHHHHHHHHHHHH
Q 045826 130 EAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHF-LKEVEHAQRIRRSVIDCFER 208 (584)
Q Consensus 130 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~-~~~~~~a~~~~~~l~~~~~~ 208 (584)
..+|..++.......+....+ ..+.||+||+|||+.++.+++||..++... +.....
T Consensus 286 ~~~V~~I~~~~~~~~V~~~~g--------~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~-------------- 343 (517)
T PRK15317 286 LQRASKLEPAAGLIEVELANG--------AVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPH-------------- 343 (517)
T ss_pred CCEEEEEEecCCeEEEEECCC--------CEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeec--------------
Confidence 678999988755443332211 179999999999999999999986443110 000000
Q ss_pred hcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHH
Q 045826 209 ASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFK 288 (584)
Q Consensus 209 ~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~ 288 (584)
. .....++++|+|||||++|+|+|..|+.++ .+|+++++.+.+.. ...+.+.+.
T Consensus 344 -----~-~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~--------------~~Vtlv~~~~~l~~------~~~l~~~l~ 397 (517)
T PRK15317 344 -----C-DGPLFKGKRVAVIGGGNSGVEAAIDLAGIV--------------KHVTVLEFAPELKA------DQVLQDKLR 397 (517)
T ss_pred -----c-CchhcCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEECccccc------cHHHHHHHh
Confidence 0 001135679999999999999999998765 79999998887643 234556666
Q ss_pred h-CCcEEEeCCceeEEcCC-----eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHH-hCCcCCCceeeCCCCcc
Q 045826 289 R-DGIDLKTGSMVVKLSDK-----EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQ-IGQANRRVLATDEWLRV 361 (584)
Q Consensus 289 ~-~GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~l~~~g~i~Vd~~l~~ 361 (584)
+ .||++++++.++++.++ .+++.+..+|++.++++|.++|++|..+ ++. +++. +.++.+|+|.||+++||
T Consensus 398 ~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p--~~~-~l~~~v~~~~~g~i~vd~~l~T 474 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP--NTE-WLKGTVELNRRGEIIVDARGAT 474 (517)
T ss_pred cCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCcc--Cch-HHhhheeeCCCCcEEECcCCCC
Confidence 5 69999999999999765 2555554456655799999999999544 443 3333 33466789999999998
Q ss_pred CCCCCEEEeCccccc
Q 045826 362 EGCESVYALGDCATI 376 (584)
Q Consensus 362 ~~~~~VfaiGD~a~~ 376 (584)
+.|+|||+|||+..
T Consensus 475 -s~p~IyAaGDv~~~ 488 (517)
T PRK15317 475 -SVPGVFAAGDCTTV 488 (517)
T ss_pred -CCCCEEECccccCC
Confidence 99999999999864
No 51
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.97 E-value=8.3e-30 Score=259.82 Aligned_cols=273 Identities=25% Similarity=0.417 Sum_probs=221.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCC--CeEEEEcCCCCCCCCC-ccccccccccCcccccHHHHHHHHHcCCcEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNS--FEVQVVSPRNYFAFTP-LLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAE 132 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g--~~V~lid~~~~~~~~p-~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~ 132 (584)
..++++|||+|++|..|+..++..+ .+++|+-+..++.|-+ .++....-. .........++++.++++. +..+.
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~--~~~~a~r~~e~Yke~gIe~-~~~t~ 149 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTV--GEGLAKRTPEFYKEKGIEL-ILGTS 149 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeec--cccccccChhhHhhcCceE-EEcce
Confidence 4679999999999999999999666 4799998888887754 333322111 1233344456778888766 56889
Q ss_pred EEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcc-cccccccCHHHHHHHHHHHHHHHHHhcC
Q 045826 133 CYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVV-EHAHFLKEVEHAQRIRRSVIDCFERASL 211 (584)
Q Consensus 133 v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~l~~~~~~~~~ 211 (584)
|+.+|...+++.+.++. .+.|++|+||||+.++++++||.+ +++..+++++++..+-..+
T Consensus 150 v~~~D~~~K~l~~~~Ge----------~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~--------- 210 (478)
T KOG1336|consen 150 VVKADLASKTLVLGNGE----------TLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAI--------- 210 (478)
T ss_pred eEEeeccccEEEeCCCc----------eeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHh---------
Confidence 99999999999998875 999999999999999999999987 7888899999988765543
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc-cccHHHHHHHHHHHHhC
Q 045826 212 PNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN-MFDKRITASAEEKFKRD 290 (584)
Q Consensus 212 ~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~-~~~~~~~~~~~~~L~~~ 290 (584)
....+|+++|+|..|+|+|.+|... ..+||+|++.+.+++ -+.+.+.+.++++++++
T Consensus 211 --------~~~~~vV~vG~G~ig~Evaa~l~~~--------------~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~k 268 (478)
T KOG1336|consen 211 --------QLGGKVVCVGGGFIGMEVAAALVSK--------------AKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENK 268 (478)
T ss_pred --------ccCceEEEECchHHHHHHHHHHHhc--------------CceEEEEccCccchhhhhhHHHHHHHHHHHHhc
Confidence 2345899999999999999999874 489999999999999 47999999999999999
Q ss_pred CcEEEeCCceeEEcCC---eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHH-hCCcCCCceeeCCCCccCCCCC
Q 045826 291 GIDLKTGSMVVKLSDK---EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQ-IGQANRRVLATDEWLRVEGCES 366 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~l~~~g~i~Vd~~l~~~~~~~ 366 (584)
||++++++.+.+++.+ .+.-....+|++ +++|+||+.+| ..|++. +++. ..++.+|.|.||+.+|| +.||
T Consensus 269 gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~--l~adlvv~GiG--~~p~t~-~~~~g~~~~~~G~i~V~~~f~t-~~~~ 342 (478)
T KOG1336|consen 269 GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKT--LEADLVVVGIG--IKPNTS-FLEKGILLDSKGGIKVDEFFQT-SVPN 342 (478)
T ss_pred CeEEEEecceeecccCCCCcEEEEEeccCCE--eccCeEEEeec--cccccc-cccccceecccCCEeehhceee-ccCC
Confidence 9999999999999653 344444455886 99999999999 566664 4442 23378899999999999 7999
Q ss_pred EEEeCccccccc
Q 045826 367 VYALGDCATINQ 378 (584)
Q Consensus 367 VfaiGD~a~~~~ 378 (584)
|||+|||+..+-
T Consensus 343 VyAiGDva~fp~ 354 (478)
T KOG1336|consen 343 VYAIGDVATFPL 354 (478)
T ss_pred cccccceeeccc
Confidence 999999999753
No 52
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=6.1e-30 Score=276.30 Aligned_cols=267 Identities=20% Similarity=0.223 Sum_probs=177.8
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEE
Q 045826 54 EFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAEC 133 (584)
Q Consensus 54 ~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v 133 (584)
....++|+|||||+||+++|..|++.|++|+|||+++.+++.. .+.++.. ..+.++.....+.+.+.+ +++..+..
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l-~~gip~~-~~~~~~~~~~~~~l~~~g--v~~~~~~~ 212 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL-RYGIPEF-RLPKDIVDREVERLLKLG--VEIRTNTE 212 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe-eccCCCc-cCCHHHHHHHHHHHHHcC--CEEEeCCE
Confidence 3456899999999999999999999999999999998765432 1122211 123355566667777777 44444433
Q ss_pred EEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCC-CCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCC
Q 045826 134 YKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ-ANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLP 212 (584)
Q Consensus 134 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 212 (584)
. .+.+.+.. ..+.||+||+|||+. ++.+++||.+.. .+..+..+........ ..
T Consensus 213 v-----~~~v~~~~-----------~~~~~d~vvlAtGa~~~~~~~i~G~~~~-----gv~~~~~~l~~~~~~~---~~- 267 (457)
T PRK11749 213 V-----GRDITLDE-----------LRAGYDAVFIGTGAGLPRFLGIPGENLG-----GVYSAVDFLTRVNQAV---AD- 267 (457)
T ss_pred E-----CCccCHHH-----------HHhhCCEEEEccCCCCCCCCCCCCccCC-----CcEEHHHHHHHHhhcc---cc-
Confidence 2 11222211 147799999999996 777788886421 1111222211111000 00
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcc-ccccccHHHHHHHHHHHHhCC
Q 045826 213 NLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDH-ILNMFDKRITASAEEKFKRDG 291 (584)
Q Consensus 213 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~L~~~G 291 (584)
.....+++|+|||||++|+|+|..+.+++ ..+|+++++.+. .++.... ..+.+++.|
T Consensus 268 ----~~~~~g~~VvViGgG~~g~e~A~~l~~~G-------------~~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~G 325 (457)
T PRK11749 268 ----YDLPVGKRVVVIGGGNTAMDAARTAKRLG-------------AESVTIVYRRGREEMPASEE-----EVEHAKEEG 325 (457)
T ss_pred ----ccCCCCCeEEEECCCHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHH-----HHHHHHHCC
Confidence 01125679999999999999999998765 138999998764 3444332 246778899
Q ss_pred cEEEeCCceeEEcCCe-----EEEEeC--------------CCCeEEEEecceEEEccCCCCCchHHHHHH-HhC--CcC
Q 045826 292 IDLKTGSMVVKLSDKE-----ISTKDR--------------ATGQISSIPYGMVVWSTGIGTRPVIMDFMK-QIG--QAN 349 (584)
Q Consensus 292 V~v~~~~~V~~v~~~~-----v~~~~~--------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~-~~~--l~~ 349 (584)
|++++++.++++.+++ +++... .+|+..++++|.|||++|+.++. .++. ..+ ++.
T Consensus 326 V~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~---~l~~~~~gl~~~~ 402 (457)
T PRK11749 326 VEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP---LILSTTPGLELNR 402 (457)
T ss_pred CEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc---hhhccccCccCCC
Confidence 9999999999996543 555421 02344469999999999975553 3332 233 367
Q ss_pred CCceeeCC-CCccCCCCCEEEeCcccc
Q 045826 350 RRVLATDE-WLRVEGCESVYALGDCAT 375 (584)
Q Consensus 350 ~g~i~Vd~-~l~~~~~~~VfaiGD~a~ 375 (584)
+|+|.||+ +++| +.|+|||+|||+.
T Consensus 403 ~g~i~vd~~~~~T-s~~~VfA~GD~~~ 428 (457)
T PRK11749 403 WGTIIADDETGRT-SLPGVFAGGDIVT 428 (457)
T ss_pred CCCEEeCCCCCcc-CCCCEEEeCCcCC
Confidence 78999998 7777 8999999999984
No 53
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=3.2e-29 Score=282.92 Aligned_cols=263 Identities=19% Similarity=0.221 Sum_probs=175.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
.+.++|+|||||+||+++|..|++.|++|+|+|+++..++.. .+.++...+ +.++.....+.+...|++ +..+...
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~l-r~~IP~~Rl-p~evL~~die~l~~~GVe--~~~gt~V 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVV-KNIIPQFRI-PAELIQHDIEFVKAHGVK--FEFGCSP 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcce-eeecccccc-cHHHHHHHHHHHHHcCCE--EEeCcee
Confidence 467899999999999999999999999999999998776542 222222222 334444444666677744 4433322
Q ss_pred EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCC-CCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCC
Q 045826 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ-ANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPN 213 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 213 (584)
.++. ... ....||+||||||+. +..+++||..++++ ..+ .+.......
T Consensus 613 di~l-------e~L----------~~~gYDaVILATGA~~~~~l~IpG~~~gV~--sal----dfL~~~k~~-------- 661 (1019)
T PRK09853 613 DLTV-------EQL----------KNEGYDYVVVAIGADKNGGLKLEGGNQNVI--KAL----PFLEEYKNK-------- 661 (1019)
T ss_pred EEEh-------hhh----------eeccCCEEEECcCCCCCCCCCCCCccCCce--ehH----HHHHHHhhh--------
Confidence 2222 111 156799999999998 45567888653332 111 111111000
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCc-cccccccHHHHHHHHHHHHhCCc
Q 045826 214 LSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGD-HILNMFDKRITASAEEKFKRDGI 292 (584)
Q Consensus 214 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~il~~~~~~~~~~~~~~L~~~GV 292 (584)
......+++|+|||||++|+|+|..+.+.. ...+|+++++.+ ..+|..+.++. +. .+.||
T Consensus 662 --~~~~~~GKrVVVIGGGnVAmD~Ar~a~Rlg------------GakeVTLVyRr~~~~MPA~~eEle----~A-leeGV 722 (1019)
T PRK09853 662 --GTALKLGKHVVVVGGGNTAMDAARAALRVP------------GVEKVTVVYRRTKQEMPAWREEYE----EA-LEDGV 722 (1019)
T ss_pred --cccccCCCEEEEECCChHHHHHHHHHHhcC------------CCceEEEEEccCcccccccHHHHH----HH-HHcCC
Confidence 001135679999999999999999887653 114899999876 45666555442 22 35799
Q ss_pred EEEeCCceeEEcCCe-EEEEe--------------CCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cCCCceee
Q 045826 293 DLKTGSMVVKLSDKE-ISTKD--------------RATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--ANRRVLAT 355 (584)
Q Consensus 293 ~v~~~~~V~~v~~~~-v~~~~--------------~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~~g~i~V 355 (584)
++++++.+++++.++ ++... ..+|+..++++|+||+|+|+.+ +. .++...++ +.+|++.|
T Consensus 723 e~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~P--nt-elle~~GL~ld~~G~I~V 799 (1019)
T PRK09853 723 EFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQV--DT-ELLKANGIPLDKKGWPVV 799 (1019)
T ss_pred EEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcC--Ch-hHHHhcCccccCCCCEEe
Confidence 999999999986332 32210 0123334699999999999644 44 45566665 56789999
Q ss_pred CCCCccCCCCCEEEeCcccc
Q 045826 356 DEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 356 d~~l~~~~~~~VfaiGD~a~ 375 (584)
|++++| +.|+|||+|||+.
T Consensus 800 DetlqT-s~pgVFAaGD~a~ 818 (1019)
T PRK09853 800 DANGET-SLTNVYMIGDVQR 818 (1019)
T ss_pred CCCccc-CCCCEEEEecccc
Confidence 999998 8999999999975
No 54
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.97 E-value=3.4e-30 Score=253.29 Aligned_cols=270 Identities=20% Similarity=0.331 Sum_probs=208.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc----------------------------cC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT----------------------------VE 107 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~----------------------------~~ 107 (584)
..+||+|||+||+|..||.+.++.|++.++||++..++++.+.-.+.+.+ ++
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 46899999999999999999999999999999998877764332221111 00
Q ss_pred -----------cccccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCC
Q 045826 108 -----------ARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANT 176 (584)
Q Consensus 108 -----------~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~ 176 (584)
..++...+..++++.+ |.++.+....++|..-.+.-.++. .+.+...++||||||.-.
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknk--V~~~kG~gsf~~p~~V~v~k~dg~--------~~ii~aKnIiiATGSeV~- 186 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNK--VTYVKGFGSFLDPNKVSVKKIDGE--------DQIIKAKNIIIATGSEVT- 186 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcC--eEEEeeeEeecCCceEEEeccCCC--------ceEEeeeeEEEEeCCccC-
Confidence 0112233556666665 778999999999884444333332 358999999999999532
Q ss_pred CCCCCcc--cccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCc
Q 045826 177 FNTPGVV--EHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYP 254 (584)
Q Consensus 177 ~~ipG~~--~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~ 254 (584)
++||+. +.. +.......++...| ++++|||+|.+|+|++.-..+++
T Consensus 187 -~~PGI~IDekk---------------IVSStgALsL~~vP-------k~~~viG~G~IGLE~gsV~~rLG--------- 234 (506)
T KOG1335|consen 187 -PFPGITIDEKK---------------IVSSTGALSLKEVP-------KKLTVIGAGYIGLEMGSVWSRLG--------- 234 (506)
T ss_pred -CCCCeEecCce---------------EEecCCccchhhCc-------ceEEEEcCceeeeehhhHHHhcC---------
Confidence 234553 211 11111122222223 39999999999999999999987
Q ss_pred CCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCCe-----EEEEeCCCCeEEEEecceEEEc
Q 045826 255 SLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKE-----ISTKDRATGQISSIPYGMVVWS 329 (584)
Q Consensus 255 ~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~-----v~~~~~~~G~~~~i~~D~vI~a 329 (584)
.+||+|+..+.+.+.+|.+++..+++.|++.|++|+++++|..++.++ +.+.+.++|++.+++||.++++
T Consensus 235 -----seVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVs 309 (506)
T KOG1335|consen 235 -----SEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVS 309 (506)
T ss_pred -----CeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEE
Confidence 799999999999999999999999999999999999999999996432 5666777788888999999999
Q ss_pred cCCCCCchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCccccc
Q 045826 330 TGIGTRPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCATI 376 (584)
Q Consensus 330 ~G~~~~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 376 (584)
+| +.|.+..| ++++|+ +.+|++.||..++| ..|+||+||||...
T Consensus 310 iG--RrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~~g 356 (506)
T KOG1335|consen 310 IG--RRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVTLG 356 (506)
T ss_pred cc--CcccccCCChhhcccccccccceeccccccc-cCCceEEecccCCc
Confidence 99 89988888 788887 67899999999999 89999999999864
No 55
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=3e-29 Score=243.67 Aligned_cols=268 Identities=19% Similarity=0.268 Sum_probs=203.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc---------------------------cC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT---------------------------VE 107 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~---------------------------~~ 107 (584)
....|.+|||||.+|+++|++.++.|.++.|+|-.-..+++.....+.+.+ .+
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 346899999999999999999999999999999664444443222211111 11
Q ss_pred cc-------cccHHH----HHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCC
Q 045826 108 AR-------SIVEPI----RNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANT 176 (584)
Q Consensus 108 ~~-------~i~~~~----~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~ 176 (584)
+. .....+ ++.+.+. .|+++.++...+++.+-.|...++. ...+.+.+++||+|.+|.+
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~--~V~~i~G~a~f~~~~~v~V~~~d~~--------~~~Ytak~iLIAtGg~p~~ 167 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKA--AVKLIEGRARFVSPGEVEVEVNDGT--------KIVYTAKHILIATGGRPII 167 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhcccc--ceeEEeeeEEEcCCCceEEEecCCe--------eEEEecceEEEEeCCccCC
Confidence 11 111112 2222333 4889999999999887777666543 2368999999999999999
Q ss_pred CCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCC
Q 045826 177 FNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSL 256 (584)
Q Consensus 177 ~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~ 256 (584)
|+|||. |+.+.. ...+++++ ..++++|||+|++++|+|+-++.++
T Consensus 168 PnIpG~-E~gidS----------------Dgff~Lee-------~Pkr~vvvGaGYIavE~Agi~~gLg----------- 212 (478)
T KOG0405|consen 168 PNIPGA-ELGIDS----------------DGFFDLEE-------QPKRVVVVGAGYIAVEFAGIFAGLG----------- 212 (478)
T ss_pred CCCCch-hhcccc----------------ccccchhh-------cCceEEEEccceEEEEhhhHHhhcC-----------
Confidence 999996 333211 11122222 3349999999999999999999886
Q ss_pred CCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 257 KEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 257 ~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
++++|+-|.+.+|..||+.+++.+.+.|+.+||++|+++.++++.. ++..+.-...|.. ..+|.++||+| +
T Consensus 213 ---sethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i--~~vd~llwAiG--R 285 (478)
T KOG0405|consen 213 ---SETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTI--EDVDTLLWAIG--R 285 (478)
T ss_pred ---CeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecccc--ccccEEEEEec--C
Confidence 8999999999999999999999999999999999999999999853 3322221123542 44999999999 8
Q ss_pred CchHHHH-HHHhCC--cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 335 RPVIMDF-MKQIGQ--ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 335 ~p~~~~l-~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.|++..+ +++.|+ +.+|.|.||++.+| +.|+||++||++.
T Consensus 286 ~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~g 328 (478)
T KOG0405|consen 286 KPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTG 328 (478)
T ss_pred CCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccC
Confidence 8888888 788887 77899999999999 9999999999986
No 56
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=1.1e-28 Score=257.69 Aligned_cols=280 Identities=19% Similarity=0.209 Sum_probs=173.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEE-EEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEA-ECY 134 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~-~v~ 134 (584)
..++|+|||||++|+++|..|++.|++|+|||+.+..++.... .........+.+...... +.+.+ +++..+ .+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~-l~~~~--i~~~~~~~v~ 92 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF-GIPEFRIPIERVREGVKE-LEEAG--VVFHTRTKVC 92 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee-cCcccccCHHHHHHHHHH-HHhCC--eEEecCcEEe
Confidence 4579999999999999999999999999999998876543211 111112222223333333 44446 444444 343
Q ss_pred EEec----CCCEEEEeecCccCCCCCceEEEeCCEEEEccCC-CCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHH-
Q 045826 135 KIDA----EKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGA-QANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFER- 208 (584)
Q Consensus 135 ~id~----~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs-~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~- 208 (584)
.++. ....+...... .+...+.||+||||||+ .+..|++||.+... +.+. ..+...+......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~--v~~~---~~~~~~~~~~~~~~ 161 (352)
T PRK12770 93 CGEPLHEEEGDEFVERIVS------LEELVKKYDAVLIATGTWKSRKLGIPGEDLPG--VYSA---LEYLFRIRAAKLGY 161 (352)
T ss_pred eccccccccccccccccCC------HHHHHhhCCEEEEEeCCCCCCcCCCCCccccC--ceeH---HHHHHHhhhccccc
Confidence 3322 01111000000 00114789999999999 47788899875321 1111 1111111110000
Q ss_pred hcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCc-EEEEecCCccccccccHHHHHHHHHHH
Q 045826 209 ASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFT-RITLLEAGDHILNMFDKRITASAEEKF 287 (584)
Q Consensus 209 ~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~~~il~~~~~~~~~~~~~~L 287 (584)
...... ....+++++|||+|++|+|+|..+...+ . +|+++++.+...... .....+.|
T Consensus 162 ~~~~~~---~~~~g~~vvViG~G~~g~e~A~~l~~~g--------------~~~Vtvi~~~~~~~~~~----~~~~~~~l 220 (352)
T PRK12770 162 LPWEKV---PPVEGKKVVVVGAGLTAVDAALEAVLLG--------------AEKVYLAYRRTINEAPA----GKYEIERL 220 (352)
T ss_pred cccccc---cccCCCEEEEECCCHHHHHHHHHHHHcC--------------CCeEEEEeecchhhCCC----CHHHHHHH
Confidence 000000 0123679999999999999999987654 4 499998766432211 13345668
Q ss_pred HhCCcEEEeCCceeEEcCCe----EEEEeC---------------CCCeEEEEecceEEEccCCCCCchHHHHHHH-hCC
Q 045826 288 KRDGIDLKTGSMVVKLSDKE----ISTKDR---------------ATGQISSIPYGMVVWSTGIGTRPVIMDFMKQ-IGQ 347 (584)
Q Consensus 288 ~~~GV~v~~~~~V~~v~~~~----v~~~~~---------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~l 347 (584)
+++||++++++.++++++++ +.+.+. .+|+..++++|.|||++|..+++ .+..+ +++
T Consensus 221 ~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~---~l~~~~~g~ 297 (352)
T PRK12770 221 IARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP---PFAKECLGI 297 (352)
T ss_pred HHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc---hhhhcccCc
Confidence 99999999999999996532 232210 12444469999999999976654 34333 554
Q ss_pred --cCCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 348 --ANRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 348 --~~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
+.+|+|.||+++++ +.|+|||+|||+.
T Consensus 298 ~~~~~g~i~vd~~~~t-~~~~vyaiGD~~~ 326 (352)
T PRK12770 298 ELNRKGEIVVDEKHMT-SREGVFAAGDVVT 326 (352)
T ss_pred eecCCCcEeeCCCccc-CCCCEEEEccccc
Confidence 56688999999998 8999999999985
No 57
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-28 Score=246.00 Aligned_cols=278 Identities=22% Similarity=0.287 Sum_probs=206.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCe-EEEEcCCCCCCCCCc----cccccc--cccCcccccHHHHHHHHHcCCcEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFE-VQVVSPRNYFAFTPL----LPSVTN--GTVEARSIVEPIRNIVRKKGMDIQF 128 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~-V~lid~~~~~~~~p~----~~~~~~--g~~~~~~i~~~~~~~~~~~g~~v~~ 128 (584)
..+||+|||||||||+||.++.+.+.+ ++|+|+. ..++++. ...++. +.....++...+.+.....+ +++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~--~~~ 78 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFG--VEI 78 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcC--eEE
Confidence 468999999999999999999999999 5556554 3333322 222221 11223345555666666666 667
Q ss_pred EEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCccccc---ccccCHHHHHHHHHHHHHH
Q 045826 129 KEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHA---HFLKEVEHAQRIRRSVIDC 205 (584)
Q Consensus 129 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~---~~~~~~~~a~~~~~~l~~~ 205 (584)
+..+|..++.....+.+....+ ++.+++||||||..++.+++||..++. ...+...|.
T Consensus 79 ~~~~v~~v~~~~~~F~v~t~~~---------~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg---------- 139 (305)
T COG0492 79 VEDEVEKVELEGGPFKVKTDKG---------TYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG---------- 139 (305)
T ss_pred EEEEEEEEeecCceEEEEECCC---------eEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc----------
Confidence 7799999998864444444321 699999999999999999988644321 111111111
Q ss_pred HHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHH
Q 045826 206 FERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEE 285 (584)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~ 285 (584)
..++++|+|||||.+++|-|..|..+. .+|++++|.+.+-+ .+.+.+
T Consensus 140 -------------~~~~k~v~ViGgG~sAve~Al~L~~~a--------------~~Vtlv~r~~~~ra------~~~~~~ 186 (305)
T COG0492 140 -------------FFKGKDVVVIGGGDSAVEEALYLSKIA--------------KKVTLVHRRDEFRA------EEILVE 186 (305)
T ss_pred -------------cccCCeEEEEcCCHHHHHHHHHHHHhc--------------CeEEEEecCcccCc------CHHHHH
Confidence 245669999999999999999999987 68999999998754 344556
Q ss_pred HHHhC-CcEEEeCCceeEEcC---CeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC-cCCCceeeCCCCc
Q 045826 286 KFKRD-GIDLKTGSMVVKLSD---KEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ-ANRRVLATDEWLR 360 (584)
Q Consensus 286 ~L~~~-GV~v~~~~~V~~v~~---~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l-~~~g~i~Vd~~l~ 360 (584)
.|+++ +|++++++.++++.+ +++++++.. |+..++++|-++.++| ..|+. .+++..+. +++|+|.||+.++
T Consensus 187 ~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~-~~~~~~~~~gvf~~iG--~~p~~-~~~~~~~~~~~~g~I~v~~~~~ 262 (305)
T COG0492 187 RLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVK-GEEKELPVDGVFIAIG--HLPNT-ELLKGLGVLDENGYIVVDEEME 262 (305)
T ss_pred HHHhcCCeEEEeCCceeEEecCccceEEEEecC-CceEEEEeceEEEecC--CCCch-HHHhhccccCCCCcEEcCCCcc
Confidence 66665 999999999999987 468887754 6666799999999999 56655 56666555 7889999999999
Q ss_pred cCCCCCEEEeCccccccccchhhhHHHHhhhcc
Q 045826 361 VEGCESVYALGDCATINQRKVMEDISAIFSKAD 393 (584)
Q Consensus 361 ~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~a~ 393 (584)
| +.|+|||+|||+..+.+++..++.+++.++.
T Consensus 263 T-svpGifAaGDv~~~~~rqi~ta~~~G~~Aa~ 294 (305)
T COG0492 263 T-SVPGIFAAGDVADKNGRQIATAAGDGAIAAL 294 (305)
T ss_pred c-CCCCEEEeEeeccCcccEEeehhhhHHHHHH
Confidence 8 9999999999999887788888888877663
No 58
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=1.3e-28 Score=280.51 Aligned_cols=272 Identities=23% Similarity=0.263 Sum_probs=177.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
.+.++|+|||||+||+++|..|++.|++|+|||+.+.+++. +.+.++...+ +.++.....+.+.+.++ +|..+...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~-l~~gip~~rl-p~~~~~~~~~~l~~~gv--~~~~~~~v 504 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGV-LKYGIPEFRL-PKKIVDVEIENLKKLGV--KFETDVIV 504 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCe-eeecCCCCCC-CHHHHHHHHHHHHHCCC--EEECCCEE
Confidence 45789999999999999999999999999999998765543 2233333232 23445555566777774 44444322
Q ss_pred EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCC-CCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCC
Q 045826 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGA-QANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPN 213 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs-~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 213 (584)
.+.+.+.+. ....||+||||||+ .|+.+++||.+. ..+.+..+... .... ..... .
T Consensus 505 -----~~~v~~~~l----------~~~~ydavvlAtGa~~~~~l~ipG~~~--~gV~~~~~~l~---~~~~-~~~~~-~- 561 (752)
T PRK12778 505 -----GKTITIEEL----------EEEGFKGIFIASGAGLPNFMNIPGENS--NGVMSSNEYLT---RVNL-MDAAS-P- 561 (752)
T ss_pred -----CCcCCHHHH----------hhcCCCEEEEeCCCCCCCCCCCCCCCC--CCcEEHHHHHH---HHhh-ccccc-c-
Confidence 223333221 15679999999999 588889999642 12222222221 1110 00000 0
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcc-ccccccHHHHHHHHHHHHhCCc
Q 045826 214 LSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDH-ILNMFDKRITASAEEKFKRDGI 292 (584)
Q Consensus 214 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~L~~~GV 292 (584)
........+++|+|||||++|+|+|..+.+++. .+|+++++.+. .+|....++ +.+++.||
T Consensus 562 ~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga-------------~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV 623 (752)
T PRK12778 562 DSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGA-------------ERVTIVYRRSEEEMPARLEEV-----KHAKEEGI 623 (752)
T ss_pred cccCcccCCCcEEEECCcHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHH-----HHHHHcCC
Confidence 000011357899999999999999999988651 25999998764 344332222 45788899
Q ss_pred EEEeCCceeEEcC--C-e---EEEEeC---------------CCCeEEEEecceEEEccCCCCCchHHHHHHHh-CC--c
Q 045826 293 DLKTGSMVVKLSD--K-E---ISTKDR---------------ATGQISSIPYGMVVWSTGIGTRPVIMDFMKQI-GQ--A 348 (584)
Q Consensus 293 ~v~~~~~V~~v~~--~-~---v~~~~~---------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~-~l--~ 348 (584)
++++++.++++.. + . +.+... .+|++.++++|+||+|+|+.++. .+.... ++ +
T Consensus 624 ~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~---~l~~~~~gl~~~ 700 (752)
T PRK12778 624 EFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP---LVPSSIPGLELN 700 (752)
T ss_pred EEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc---cccccccCceEC
Confidence 9999999998852 2 2 233210 02344469999999999976554 233332 44 5
Q ss_pred CCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 349 NRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 349 ~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.+|+|.||++++| +.|+|||+|||+.
T Consensus 701 ~~G~i~vd~~~~T-s~~gVfA~GD~~~ 726 (752)
T PRK12778 701 RKGTIVVDEEMQS-SIPGIYAGGDIVR 726 (752)
T ss_pred CCCCEEeCCCCCC-CCCCEEEeCCccC
Confidence 6789999999987 8999999999985
No 59
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.96 E-value=1.6e-28 Score=261.03 Aligned_cols=273 Identities=22% Similarity=0.394 Sum_probs=228.5
Q ss_pred CCCeEEEECCcHHHHHHHHhccc---CCCeEEEEcCCCCCCCC-CccccccccccCcccccHHHHHHHHHcCCcEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKS---NSFEVQVVSPRNYFAFT-PLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEA 131 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~---~g~~V~lid~~~~~~~~-p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~ 131 (584)
.+.++||||.|.+|..+...+.. .-++||++-..++..|. .++..+.++..+.+++...-.+++++.++++ +...
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L-~~~~ 80 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITL-YTGE 80 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEE-EcCC
Confidence 35789999999999999888874 56899999988887774 6778888887777777777788899998665 4578
Q ss_pred EEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcc-cccccccCHHHHHHHHHHHHHHHHHhc
Q 045826 132 ECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVV-EHAHFLKEVEHAQRIRRSVIDCFERAS 210 (584)
Q Consensus 132 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~-~~~~~~~~~~~a~~~~~~l~~~~~~~~ 210 (584)
.|+.||++++.|..+.+. .+.||.||+||||.|..+++||.. ..++.+++++|..++.+.-
T Consensus 81 ~v~~idr~~k~V~t~~g~----------~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a-------- 142 (793)
T COG1251 81 KVIQIDRANKVVTTDAGR----------TVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA-------- 142 (793)
T ss_pred eeEEeccCcceEEccCCc----------EeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH--------
Confidence 899999999999987765 899999999999999999999986 5788899999988765541
Q ss_pred CCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc-cccHHHHHHHHHHHHh
Q 045826 211 LPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN-MFDKRITASAEEKFKR 289 (584)
Q Consensus 211 ~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~-~~~~~~~~~~~~~L~~ 289 (584)
+..++-+|||||..|+|+|..|.+.+ .++++++..+.+|. ++++.....+.+.+++
T Consensus 143 ---------r~~~~avVIGGGLLGlEaA~~L~~~G--------------m~~~Vvh~~~~lMerQLD~~ag~lL~~~le~ 199 (793)
T COG1251 143 ---------RNKKKAVVIGGGLLGLEAARGLKDLG--------------MEVTVVHIAPTLMERQLDRTAGRLLRRKLED 199 (793)
T ss_pred ---------hccCCcEEEccchhhhHHHHHHHhCC--------------CceEEEeecchHHHHhhhhHHHHHHHHHHHh
Confidence 33446899999999999999999865 89999999999886 5899999999999999
Q ss_pred CCcEEEeCCceeEEcCC-eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCCcCCCceeeCCCCccCCCCCEE
Q 045826 290 DGIDLKTGSMVVKLSDK-EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEWLRVEGCESVY 368 (584)
Q Consensus 290 ~GV~v~~~~~V~~v~~~-~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~~~g~i~Vd~~l~~~~~~~Vf 368 (584)
+||+++++...+++..+ .++....++|+. +++|.||||+|++++. .+....++.-+..|.||+++|| +.|+||
T Consensus 200 ~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~--i~ad~VV~a~GIrPn~---ela~~aGlavnrGIvvnd~mqT-sdpdIY 273 (793)
T COG1251 200 LGIKVLLEKNTEEIVGEDKVEGVRFADGTE--IPADLVVMAVGIRPND---ELAKEAGLAVNRGIVVNDYMQT-SDPDIY 273 (793)
T ss_pred hcceeecccchhhhhcCcceeeEeecCCCc--ccceeEEEeccccccc---HhHHhcCcCcCCCeeecccccc-cCCCee
Confidence 99999999988888543 233333345886 9999999999976654 6777888843337999999999 999999
Q ss_pred EeCccccc
Q 045826 369 ALGDCATI 376 (584)
Q Consensus 369 aiGD~a~~ 376 (584)
|+|+|+..
T Consensus 274 AvGEcae~ 281 (793)
T COG1251 274 AVGECAEH 281 (793)
T ss_pred ehhhHHHh
Confidence 99999985
No 60
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.96 E-value=4.8e-28 Score=277.90 Aligned_cols=275 Identities=16% Similarity=0.188 Sum_probs=180.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
.+.++|+|||||||||+||..|++.|++|||||+.+..++. +.+.++..++ +.++.....+.++..|+ +|......
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~-l~yGIP~~rl-p~~vi~~~i~~l~~~Gv--~f~~n~~v 379 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV-LRYGIPEFRL-PNQLIDDVVEKIKLLGG--RFVKNFVV 379 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce-EEccCCCCcC-hHHHHHHHHHHHHhhcC--eEEEeEEe
Confidence 34789999999999999999999999999999999877664 3344444333 34566666677788884 45444332
Q ss_pred EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCC-CCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCC
Q 045826 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ-ANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPN 213 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 213 (584)
. +.+.+.+. ....||+||||||+. |+.+++||.+ ...+.+..+.+...+.... .. ....
T Consensus 380 G-----~dit~~~l----------~~~~yDAV~LAtGA~~pr~l~IpG~d--l~GV~~a~dfL~~~~~~~~-~~-~~~~- 439 (944)
T PRK12779 380 G-----KTATLEDL----------KAAGFWKIFVGTGAGLPTFMNVPGEH--LLGVMSANEFLTRVNLMRG-LD-DDYE- 439 (944)
T ss_pred c-----cEEeHHHh----------ccccCCEEEEeCCCCCCCcCCCCCCc--CcCcEEHHHHHHHHHhhcc-cc-cccc-
Confidence 2 23444332 146799999999995 8888999953 1222233332221111100 00 0000
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcc-ccccccHHHHHHHHHHHHhCCc
Q 045826 214 LSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDH-ILNMFDKRITASAEEKFKRDGI 292 (584)
Q Consensus 214 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~L~~~GV 292 (584)
.+.....+++|+|||||++|+|+|..+.+++ .+|+++++.+. .+|....++ +...+.||
T Consensus 440 -~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~G--------------a~Vtlv~rr~~~~mpa~~~e~-----~~a~eeGV 499 (944)
T PRK12779 440 -TPLPEVKGKEVFVIGGGNTAMDAARTAKRLG--------------GNVTIVYRRTKSEMPARVEEL-----HHALEEGI 499 (944)
T ss_pred -ccccccCCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEEecCcccccccHHHH-----HHHHHCCC
Confidence 0001135789999999999999999999875 68999998754 344333222 22346799
Q ss_pred EEEeCCceeEEcCC----eE---EEEe--------------CCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cC
Q 045826 293 DLKTGSMVVKLSDK----EI---STKD--------------RATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--AN 349 (584)
Q Consensus 293 ~v~~~~~V~~v~~~----~v---~~~~--------------~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~ 349 (584)
++++++.++++..+ .+ .+.. ..+|++.++++|.||+|+|+.+++.. .....++ +.
T Consensus 500 ~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l--~~~~~gle~~~ 577 (944)
T PRK12779 500 NLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM--KDAEPGLKTNK 577 (944)
T ss_pred EEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhh--hhcccCceECC
Confidence 99999999998532 12 1110 01344457999999999997655421 1222344 56
Q ss_pred CCceeeCC-CCccCCCCCEEEeCccccc
Q 045826 350 RRVLATDE-WLRVEGCESVYALGDCATI 376 (584)
Q Consensus 350 ~g~i~Vd~-~l~~~~~~~VfaiGD~a~~ 376 (584)
+|.|.||+ +++| +.|+|||+|||+..
T Consensus 578 ~G~I~vd~~~~~T-s~pgVFAaGD~~~G 604 (944)
T PRK12779 578 WGTIEVEKGSQRT-SIKGVYSGGDAARG 604 (944)
T ss_pred CCCEEECCCCCcc-CCCCEEEEEcCCCC
Confidence 78999997 4677 89999999999863
No 61
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=8.9e-28 Score=259.96 Aligned_cols=275 Identities=17% Similarity=0.221 Sum_probs=174.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
...++|+|||||+||+++|..|++.|++|+|||+.+..++. +.+.++.... +.++.....+.+.+.+++ +..++..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~-l~~gip~~~~-~~~~~~~~~~~~~~~gv~--~~~~~~v 216 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGL-LRYGIPDFKL-EKEVIDRRIELMEAEGIE--FRTNVEV 216 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCce-eeecCCcccC-CHHHHHHHHHHHHhCCcE--EEeCCEE
Confidence 45679999999999999999999999999999999876543 2222222222 233444555667777744 4444333
Q ss_pred EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCC-CCCCCCCCccc-ccccccCHHHHHHHHHHHH-HHHHHhcC
Q 045826 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ-ANTFNTPGVVE-HAHFLKEVEHAQRIRRSVI-DCFERASL 211 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~-~~~~~ipG~~~-~~~~~~~~~~a~~~~~~l~-~~~~~~~~ 211 (584)
..+.. .. .....||+||+|||+. +..+++||.+. ++++ +..+..... ..+.....
T Consensus 217 ~~~~~-----~~-----------~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~------~~~~l~~~~~~~~~~~~~ 274 (471)
T PRK12810 217 GKDIT-----AE-----------ELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHF------AMDFLIQNTRRVLGDETE 274 (471)
T ss_pred CCcCC-----HH-----------HHHhhCCEEEEecCCCCCCcCCCCCccCCCcEE------HHHHHHHHHhhhcccccc
Confidence 22211 00 0145799999999997 77788998642 2221 111111110 00000000
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccc-cH-----HHHHHHHH
Q 045826 212 PNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF-DK-----RITASAEE 285 (584)
Q Consensus 212 ~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~-~~-----~~~~~~~~ 285 (584)
+.....+++|+|||+|++|+|+|..+.+.+. .+|++++..+...... +. .......+
T Consensus 275 ----~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga-------------~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (471)
T PRK12810 275 ----PFISAKGKHVVVIGGGDTGMDCVGTAIRQGA-------------KSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVS 337 (471)
T ss_pred ----ccccCCCCEEEEECCcHHHHHHHHHHHHcCC-------------CeEEEccccCCCccccccccCCcccchHHHHH
Confidence 0011356799999999999999998877652 4788776554322111 00 00111346
Q ss_pred HHHhCCcEEEeCCceeEEcC--CeEE---EEe--C-------CCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cC
Q 045826 286 KFKRDGIDLKTGSMVVKLSD--KEIS---TKD--R-------ATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--AN 349 (584)
Q Consensus 286 ~L~~~GV~v~~~~~V~~v~~--~~v~---~~~--~-------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~ 349 (584)
.+++.||++++++.++++.. +.++ +.. . .+|+..++++|.||+|+|+.++. ..+++.+++ +.
T Consensus 338 ~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~--~~l~~~~gl~~~~ 415 (471)
T PRK12810 338 NAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPE--AGLLAQFGVELDE 415 (471)
T ss_pred HHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCc--hhhccccCcccCC
Confidence 67889999999999999963 3332 221 1 12444579999999999965542 235566665 56
Q ss_pred CCceeeC-CCCccCCCCCEEEeCcccc
Q 045826 350 RRVLATD-EWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 350 ~g~i~Vd-~~l~~~~~~~VfaiGD~a~ 375 (584)
+|.+.|| ++++| +.|+|||+|||+.
T Consensus 416 ~g~i~vd~~~~~T-s~~gVfa~GD~~~ 441 (471)
T PRK12810 416 RGRVAAPDNAYQT-SNPKVFAAGDMRR 441 (471)
T ss_pred CCCEEeCCCcccC-CCCCEEEccccCC
Confidence 7899998 78997 8999999999985
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=4.9e-28 Score=270.75 Aligned_cols=263 Identities=19% Similarity=0.246 Sum_probs=172.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
...++|+|||||+||+++|..|++.|++|+|||+++..++.. .+.++. ...+.++.....+.+...|+++ ....+.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l-~~gip~-~~~~~~~~~~~~~~l~~~Gv~i--~~~~~v 266 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMM-RYGIPR-FRLPESVIDADIAPLRAMGAEF--RFNTVF 266 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcee-eecCCC-CCCCHHHHHHHHHHHHHcCCEE--EeCCcc
Confidence 456899999999999999999999999999999998776532 222222 1223344455556667777443 333332
Q ss_pred EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCC-CCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCC
Q 045826 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQA-NTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPN 213 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 213 (584)
.++ +.+.. ....||+||+|||+.+ ..+++||.+.. .+.+ +..+.+....
T Consensus 267 ~~d-----v~~~~-----------~~~~~DaVilAtGa~~~~~~~ipG~~~~--gv~~---~~~~l~~~~~--------- 316 (652)
T PRK12814 267 GRD-----ITLEE-----------LQKEFDAVLLAVGAQKASKMGIPGEELP--GVIS---GIDFLRNVAL--------- 316 (652)
T ss_pred cCc-----cCHHH-----------HHhhcCEEEEEcCCCCCCCCCCCCcCcC--CcEe---HHHHHHHhhc---------
Confidence 221 11111 1345999999999985 46788885421 1111 1111111100
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcc-ccccccHHHHHHHHHHHHhCCc
Q 045826 214 LSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDH-ILNMFDKRITASAEEKFKRDGI 292 (584)
Q Consensus 214 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~L~~~GV 292 (584)
......+++|+|||||++|+|+|..+.+++. .+|+++++.++ .+|..+.++ +...+.||
T Consensus 317 --~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga-------------~~Vtlv~r~~~~~mpa~~~ei-----~~a~~eGV 376 (652)
T PRK12814 317 --GTALHPGKKVVVIGGGNTAIDAARTALRLGA-------------ESVTILYRRTREEMPANRAEI-----EEALAEGV 376 (652)
T ss_pred --CCcccCCCeEEEECCCHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHH-----HHHHHcCC
Confidence 0011357799999999999999999887652 47999998775 566554443 22235799
Q ss_pred EEEeCCceeEEcC--CeEEEE-----eC------------CCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cCCC
Q 045826 293 DLKTGSMVVKLSD--KEISTK-----DR------------ATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--ANRR 351 (584)
Q Consensus 293 ~v~~~~~V~~v~~--~~v~~~-----~~------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~~g 351 (584)
+|++++.++++.. +++.+. .. .+|++.++++|.||+++|+.++. .+++..++ +.+|
T Consensus 377 ~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~---~ll~~~gl~~~~~G 453 (652)
T PRK12814 377 SLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDP---PIAEAAGIGTSRNG 453 (652)
T ss_pred cEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCc---ccccccCccccCCC
Confidence 9999999988853 333221 10 12444469999999999965543 34555555 5678
Q ss_pred ceeeCC-CCccCCCCCEEEeCcccc
Q 045826 352 VLATDE-WLRVEGCESVYALGDCAT 375 (584)
Q Consensus 352 ~i~Vd~-~l~~~~~~~VfaiGD~a~ 375 (584)
+|.||+ +++| +.|+|||+|||+.
T Consensus 454 ~I~vd~~~~~T-s~pgVfA~GDv~~ 477 (652)
T PRK12814 454 TVKVDPETLQT-SVAGVFAGGDCVT 477 (652)
T ss_pred cEeeCCCCCcC-CCCCEEEcCCcCC
Confidence 999997 4666 8999999999975
No 63
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-28 Score=236.84 Aligned_cols=273 Identities=21% Similarity=0.318 Sum_probs=191.0
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEc---CCCC-----CCCCC---------ccccc---------------
Q 045826 54 EFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVS---PRNY-----FAFTP---------LLPSV--------------- 101 (584)
Q Consensus 54 ~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid---~~~~-----~~~~p---------~~~~~--------------- 101 (584)
.+..+|++|||||.+||+||++.+..|.+|.++| +.|. .+++. +.++.
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 3457999999999999999999999999999998 3331 01110 00100
Q ss_pred --ccccc--CcccccHHHHHHHHHcC---------CcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEE
Q 045826 102 --TNGTV--EARSIVEPIRNIVRKKG---------MDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVI 168 (584)
Q Consensus 102 --~~g~~--~~~~i~~~~~~~~~~~g---------~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVl 168 (584)
..+.+ +...+....++.++..+ -.|.++++-.+.+|++ ++...+.. + ++..+.++++||
T Consensus 96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h--~I~at~~~-----g-k~~~~ta~~fvI 167 (503)
T KOG4716|consen 96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPH--KIKATNKK-----G-KERFLTAENFVI 167 (503)
T ss_pred CCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccc--eEEEecCC-----C-ceEEeecceEEE
Confidence 00000 11112222333332211 1245556666666655 33333322 1 246899999999
Q ss_pred ccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHh
Q 045826 169 AMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDD 248 (584)
Q Consensus 169 AtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~ 248 (584)
|||.+|++|+|||..|++++.. +.++++..|. +-+|||+|+++.|+|+.|+-++
T Consensus 168 atG~RPrYp~IpG~~Ey~ITSD----------------DlFsl~~~PG-------kTLvVGa~YVaLECAgFL~gfg--- 221 (503)
T KOG4716|consen 168 ATGLRPRYPDIPGAKEYGITSD----------------DLFSLPYEPG-------KTLVVGAGYVALECAGFLKGFG--- 221 (503)
T ss_pred EecCCCCCCCCCCceeeeeccc----------------ccccccCCCC-------ceEEEccceeeeehhhhHhhcC---
Confidence 9999999999999988876543 2334443333 8899999999999999999886
Q ss_pred HhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc---CCe--EEEEeCCCCeEEEEec
Q 045826 249 LSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS---DKE--ISTKDRATGQISSIPY 323 (584)
Q Consensus 249 ~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~---~~~--v~~~~~~~G~~~~i~~ 323 (584)
..|++..|+ -+|.+||.++.+.+.+.|+++||+|...+.+++|+ ++. |...++.+++.-+-++
T Consensus 222 -----------~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~y 289 (503)
T KOG4716|consen 222 -----------YDVTVMVRS-ILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEY 289 (503)
T ss_pred -----------CCcEEEEEE-eecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchh
Confidence 677777663 47789999999999999999999999887666664 444 4444444455444679
Q ss_pred ceEEEccCCCCCchHHHH-HHHhCC--c-CCCceeeCCCCccCCCCCEEEeCcccc
Q 045826 324 GMVVWSTGIGTRPVIMDF-MKQIGQ--A-NRRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 324 D~vI~a~G~~~~p~~~~l-~~~~~l--~-~~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
|+|+||+| +.++++++ ++.+|+ + ..|.|.||+.-++ +.|+|||+||+..
T Consensus 290 dTVl~AiG--R~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDIl~ 342 (503)
T KOG4716|consen 290 DTVLWAIG--RKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDILE 342 (503)
T ss_pred hhhhhhhc--cccchhhcCCCccceeecccCCccccChHHhc-CCCceEEecceec
Confidence 99999999 78877777 666676 2 4578999998888 8999999999975
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.95 E-value=9.1e-27 Score=269.71 Aligned_cols=272 Identities=17% Similarity=0.181 Sum_probs=175.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYK 135 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~ 135 (584)
+.++|+|||||||||++|..|++.|++|+|+|+.+..++. +.+.++... .+.++.....+.+.+.|++ +....+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~-l~~gip~~r-l~~e~~~~~~~~l~~~Gv~--~~~~~~vg 504 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV-LQYGIPSFR-LPRDIIDREVQRLVDIGVK--IETNKVIG 504 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcce-eeccCCccC-CCHHHHHHHHHHHHHCCCE--EEeCCccC
Confidence 4689999999999999999999999999999998876653 223333332 2445666677778888844 44443322
Q ss_pred EecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCC-CCCCCCCCcc-cccccccCHHHHHHHHHHHHHHHHHhcCCC
Q 045826 136 IDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ-ANTFNTPGVV-EHAHFLKEVEHAQRIRRSVIDCFERASLPN 213 (584)
Q Consensus 136 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~-~~~~~ipG~~-~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 213 (584)
+.+.+.... ....||+||||||+. |+.+++||.+ ..++ +..+.+. .+.. ......+.
T Consensus 505 -----~~~~~~~l~---------~~~~yDaViIATGa~~pr~l~IpG~~l~gV~---~a~~fL~---~~~~-~~~~~~~~ 563 (1006)
T PRK12775 505 -----KTFTVPQLM---------NDKGFDAVFLGVGAGAPTFLGIPGEFAGQVY---SANEFLT---RVNL-MGGDKFPF 563 (1006)
T ss_pred -----CccCHHHHh---------hccCCCEEEEecCCCCCCCCCCCCcCCCCcE---EHHHHHH---HHHh-cCcccccc
Confidence 122221110 035699999999995 8889999953 2222 2222221 1110 00000000
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcc-ccccccHHHHHHHHHHHHhCCc
Q 045826 214 LSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDH-ILNMFDKRITASAEEKFKRDGI 292 (584)
Q Consensus 214 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~L~~~GV 292 (584)
. ......+++|+|||||++|+|+|..+.+++. ..|+++++... -++....+ .+.+++.||
T Consensus 564 ~-~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa-------------~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI 624 (1006)
T PRK12775 564 L-DTPISLGKSVVVIGAGNTAMDCLRVAKRLGA-------------PTVRCVYRRSEAEAPARIEE-----IRHAKEEGI 624 (1006)
T ss_pred c-cCCccCCCEEEEECCcHHHHHHHHHHHHcCC-------------CEEEEEeecCcccCCCCHHH-----HHHHHhCCC
Confidence 0 0011357899999999999999999888762 36888876543 23322221 256778999
Q ss_pred EEEeCCceeEEcC--C-e---EEEEeC------C--------CCeEEEEecceEEEccCCCCCchHHHHHHH---hCCcC
Q 045826 293 DLKTGSMVVKLSD--K-E---ISTKDR------A--------TGQISSIPYGMVVWSTGIGTRPVIMDFMKQ---IGQAN 349 (584)
Q Consensus 293 ~v~~~~~V~~v~~--~-~---v~~~~~------~--------~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~---~~l~~ 349 (584)
+|++++.++++.. + . +.+... . +|+..++++|.||+|+|+.++. .++.. +.++.
T Consensus 625 ~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~---~~~~~~~gl~l~~ 701 (1006)
T PRK12775 625 DFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANP---IITQSTPGLALNK 701 (1006)
T ss_pred EEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCCh---hhhhccCCcccCC
Confidence 9999999999842 2 2 333210 1 2344469999999999965553 23322 23366
Q ss_pred CCceeeCC-----CCccCCCCCEEEeCcccc
Q 045826 350 RRVLATDE-----WLRVEGCESVYALGDCAT 375 (584)
Q Consensus 350 ~g~i~Vd~-----~l~~~~~~~VfaiGD~a~ 375 (584)
+|.|.||+ +++| +.|+|||+|||+.
T Consensus 702 ~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~ 731 (1006)
T PRK12775 702 WGNIAADDGKLESTQST-NLPGVFAGGDIVT 731 (1006)
T ss_pred CCcEEeCCCccccCcCC-CCCCEEEecCcCC
Confidence 78899996 6777 8999999999985
No 65
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.95 E-value=3.1e-26 Score=247.12 Aligned_cols=274 Identities=16% Similarity=0.183 Sum_probs=175.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYK 135 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~ 135 (584)
+.++|+|||||++|+++|..|++.|++|+|+|+.+..++.. .+.++.... +.++.....+++.+.|+++. .+..+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l-~~gip~~~~-~~~~~~~~~~~~~~~Gv~~~-~~~~v~- 215 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLL-TFGIPSFKL-DKAVLSRRREIFTAMGIEFH-LNCEVG- 215 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCcee-eecCccccC-CHHHHHHHHHHHHHCCCEEE-CCCEeC-
Confidence 56899999999999999999999999999999998766532 223332222 33455556677888885542 233221
Q ss_pred EecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCC-CCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCC
Q 045826 136 IDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQA-NTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNL 214 (584)
Q Consensus 136 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~ 214 (584)
+.+.+.+ ....||.||+|||+.+ ..+++||.+.. .+.+..+...-..+ ...........
T Consensus 216 -----~~~~~~~-----------~~~~~D~vilAtGa~~~~~~~i~g~~~~--gV~~a~~~l~~~~~--~~~~~~~~~~~ 275 (467)
T TIGR01318 216 -----RDISLDD-----------LLEDYDAVFLGVGTYRSMRGGLPGEDAP--GVLQALPFLIANTR--QLMGLPESPEE 275 (467)
T ss_pred -----CccCHHH-----------HHhcCCEEEEEeCCCCCCcCCCCCcCCC--CcEEHHHHHHHHHH--HhcCCCccccc
Confidence 1111111 1357999999999986 45688886421 11111111110000 00000000000
Q ss_pred CHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcc-ccccccHHHHHHHHHHHHhCCcE
Q 045826 215 SDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDH-ILNMFDKRITASAEEKFKRDGID 293 (584)
Q Consensus 215 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~L~~~GV~ 293 (584)
+ .....+++++|||+|++|+|+|..+.+++. .+|+++++.+. .++..+.++ +.+++.||+
T Consensus 276 ~-~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga-------------~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~ 336 (467)
T TIGR01318 276 P-LIDVEGKRVVVLGGGDTAMDCVRTAIRLGA-------------ASVTCAYRRDEANMPGSRREV-----ANAREEGVE 336 (467)
T ss_pred c-ccccCCCEEEEECCcHHHHHHHHHHHHcCC-------------CeEEEEEecCcccCCCCHHHH-----HHHHhcCCE
Confidence 0 001346799999999999999999887651 47999998775 456544433 456788999
Q ss_pred EEeCCceeEEcC--C-eE---EEEeC---------------CCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cCC
Q 045826 294 LKTGSMVVKLSD--K-EI---STKDR---------------ATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--ANR 350 (584)
Q Consensus 294 v~~~~~V~~v~~--~-~v---~~~~~---------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~~ 350 (584)
+++++.++++.. + .+ ++... .+|+..++++|.||+++|+.++. ..+++..++ +.+
T Consensus 337 ~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~--~~~~~~~gl~~~~~ 414 (467)
T TIGR01318 337 FLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHA--MPWLAGHGITLDSW 414 (467)
T ss_pred EEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCc--cccccccCccCCCC
Confidence 999999999853 2 22 33211 02344569999999999976542 134444444 567
Q ss_pred CceeeC----CCCccCCCCCEEEeCcccc
Q 045826 351 RVLATD----EWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 351 g~i~Vd----~~l~~~~~~~VfaiGD~a~ 375 (584)
|+|.|| .+++| +.|+|||+|||+.
T Consensus 415 g~i~vd~~~~~~~~T-~~~gVfa~GD~~~ 442 (467)
T TIGR01318 415 GRIITGDVSYLPYQT-TNPKIFAGGDAVR 442 (467)
T ss_pred CCEEeCCccccCccC-CCCCEEEECCcCC
Confidence 899999 57887 8999999999975
No 66
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=2.7e-26 Score=257.75 Aligned_cols=273 Identities=18% Similarity=0.228 Sum_probs=173.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
.+.++|+|||||+|||++|..|++.|++|+|+|+.+..++. +.+.++...+ +.++.....+.+.+.|+ ++......
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~-l~~gip~~~l-~~~~~~~~~~~~~~~Gv--~~~~~~~v 400 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGL-LTFGIPAFKL-DKSLLARRREIFSAMGI--EFELNCEV 400 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce-eeecCCCccC-CHHHHHHHHHHHHHCCe--EEECCCEe
Confidence 35689999999999999999999999999999998877654 2223332222 23444555566777774 44322211
Q ss_pred EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCC-CCCCCCCccc-ccccccCHHHHHHHH-HHHHHHHHHhcC
Q 045826 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQA-NTFNTPGVVE-HAHFLKEVEHAQRIR-RSVIDCFERASL 211 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~-~~~~ipG~~~-~~~~~~~~~~a~~~~-~~l~~~~~~~~~ 211 (584)
.. .+.+.. ....||.|++|+|+.. ..+++||... .++ ++..+. ............
T Consensus 401 ~~-----~i~~~~-----------~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~------~a~~~l~~~~~~~~~~~~~ 458 (654)
T PRK12769 401 GK-----DISLES-----------LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVY------DALPFLIANTKQVMGLEEL 458 (654)
T ss_pred CC-----cCCHHH-----------HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeE------EhHHHHHHHHhhhccCccc
Confidence 11 111111 1346999999999964 4567887642 211 111110 010010000000
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccc-cccccHHHHHHHHHHHHhC
Q 045826 212 PNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHI-LNMFDKRITASAEEKFKRD 290 (584)
Q Consensus 212 ~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i-l~~~~~~~~~~~~~~L~~~ 290 (584)
... +.....+++|+|||||++|+|+|..+.+.+. .+|+++++.+.. +|..+.++ +.+++.
T Consensus 459 ~~~-~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga-------------~~Vt~i~~~~~~~~~~~~~e~-----~~~~~~ 519 (654)
T PRK12769 459 PEE-PFINTAGLNVVVLGGGDTAMDCVRTALRHGA-------------SNVTCAYRRDEANMPGSKKEV-----KNAREE 519 (654)
T ss_pred ccc-ccccCCCCeEEEECCcHHHHHHHHHHHHcCC-------------CeEEEeEecCCCCCCCCHHHH-----HHHHHc
Confidence 000 0011356799999999999999998877652 479999987654 55544332 567889
Q ss_pred CcEEEeCCceeEEc--C-Ce---EEEEeC------C---------CCeEEEEecceEEEccCCCCCchHHHHHHHhCC--
Q 045826 291 GIDLKTGSMVVKLS--D-KE---ISTKDR------A---------TGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ-- 347 (584)
Q Consensus 291 GV~v~~~~~V~~v~--~-~~---v~~~~~------~---------~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l-- 347 (584)
||++++++.++++. + +. +++... . .|++.++++|+||+|+|+.++. ..+++..++
T Consensus 520 Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~--~~~~~~~gl~~ 597 (654)
T PRK12769 520 GANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHG--MPWLESHGVTV 597 (654)
T ss_pred CCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCc--cccccccCCcC
Confidence 99999999999985 2 22 333210 1 2444579999999999975542 134455555
Q ss_pred cCCCceeeCC----CCccCCCCCEEEeCcccc
Q 045826 348 ANRRVLATDE----WLRVEGCESVYALGDCAT 375 (584)
Q Consensus 348 ~~~g~i~Vd~----~l~~~~~~~VfaiGD~a~ 375 (584)
+.+|.|.||+ +++| +.|+|||+|||+.
T Consensus 598 ~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~ 628 (654)
T PRK12769 598 DKWGRIIADVESQYRYQT-SNPKIFAGGDAVR 628 (654)
T ss_pred CCCCCEEeCCCcccCccc-CCCCEEEcCCcCC
Confidence 6678999986 4787 8999999999975
No 67
>PRK13984 putative oxidoreductase; Provisional
Probab=99.94 E-value=1.4e-25 Score=250.42 Aligned_cols=274 Identities=17% Similarity=0.167 Sum_probs=168.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
...++|+|||+|+||+++|..|++.|++|+|+|+.+..++... +.++... .+.++.....+.+++.+++ ++.....
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~-~~i~~~~-~~~~~~~~~~~~~~~~gv~--~~~~~~v 356 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR-YGIPSYR-LPDEALDKDIAFIEALGVK--IHLNTRV 356 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe-ecCCccc-CCHHHHHHHHHHHHHCCcE--EECCCEe
Confidence 4568999999999999999999999999999999987665321 2222222 2233444445667777744 3332221
Q ss_pred EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCC-CCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCC
Q 045826 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ-ANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPN 213 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 213 (584)
..+ +.... ....||+||+|||+. ++.+++||.+... .+. +..+...+...+....
T Consensus 357 ~~~-----~~~~~-----------~~~~yD~vilAtGa~~~r~l~i~G~~~~g-v~~----a~~~l~~~~~~~~~~~--- 412 (604)
T PRK13984 357 GKD-----IPLEE-----------LREKHDAVFLSTGFTLGRSTRIPGTDHPD-VIQ----ALPLLREIRDYLRGEG--- 412 (604)
T ss_pred CCc-----CCHHH-----------HHhcCCEEEEEcCcCCCccCCCCCcCCcC-eEe----HHHHHHHHHhhhccCC---
Confidence 111 11110 145799999999997 6778899974221 111 2222222222111100
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecC--CccccccccHHHHHHHHHHHHhCC
Q 045826 214 LSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEA--GDHILNMFDKRITASAEEKFKRDG 291 (584)
Q Consensus 214 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~--~~~il~~~~~~~~~~~~~~L~~~G 291 (584)
.....+++|+|||||++|+|+|..+.+++.. .+ ...+|+++.. ....++....++ ..+.+.|
T Consensus 413 ---~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~----~~----g~~~V~v~~~~r~~~~~~~~~~e~-----~~~~~~G 476 (604)
T PRK13984 413 ---PKPKIPRSLVVIGGGNVAMDIARSMARLQKM----EY----GEVNVKVTSLERTFEEMPADMEEI-----EEGLEEG 476 (604)
T ss_pred ---CcCCCCCcEEEECCchHHHHHHHHHHhcccc----cc----CceEEEEeccccCcccCCCCHHHH-----HHHHHcC
Confidence 0012357999999999999999999876410 00 1246777643 223344333322 2234679
Q ss_pred cEEEeCCceeEEcC--Ce---EEEEe-----CC---------CCeEEEEecceEEEccCCCCCchHHHHHHHh--CC-cC
Q 045826 292 IDLKTGSMVVKLSD--KE---ISTKD-----RA---------TGQISSIPYGMVVWSTGIGTRPVIMDFMKQI--GQ-AN 349 (584)
Q Consensus 292 V~v~~~~~V~~v~~--~~---v~~~~-----~~---------~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~--~l-~~ 349 (584)
|++++++.++++.. +. +.+.. .. +|+..++++|.||+|+|+. |++..+...+ ++ ..
T Consensus 477 V~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~--p~~~~l~~~~~~~l~~~ 554 (604)
T PRK13984 477 VVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA--PDYSYLPEELKSKLEFV 554 (604)
T ss_pred CEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC--CChhhhhhhhccCcccc
Confidence 99999998888853 22 22221 01 1333469999999999965 4443333333 23 25
Q ss_pred CCceeeCCCCccCCCCCEEEeCcccc
Q 045826 350 RRVLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 350 ~g~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
+|+|.||+++|| +.|+|||+|||+.
T Consensus 555 ~G~i~vd~~~~T-s~~gVfAaGD~~~ 579 (604)
T PRK13984 555 RGRILTNEYGQT-SIPWLFAGGDIVH 579 (604)
T ss_pred CCeEEeCCCCcc-CCCCEEEecCcCC
Confidence 788999999998 8999999999985
No 68
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.94 E-value=2e-25 Score=241.81 Aligned_cols=277 Identities=19% Similarity=0.252 Sum_probs=166.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYK 135 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~ 135 (584)
..++|+|||||++|+++|..|++.|++|+|+|+.+..++.. .+.++..... .++.....+.++..|++ +..+....
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l-~~gip~~~~~-~~~~~~~~~~~~~~Gv~--~~~~~~v~ 217 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLL-MYGIPNMKLD-KAIVDRRIDLLSAEGID--FVTNTEIG 217 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCcee-eccCCCccCC-HHHHHHHHHHHHhCCCE--EECCCEeC
Confidence 45799999999999999999999999999999988765421 2222222222 23444445667777744 44333222
Q ss_pred EecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCC-CCCCCCCCccc-ccccccCHHHHHHHHHHHHHHHHHhcCCC
Q 045826 136 IDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ-ANTFNTPGVVE-HAHFLKEVEHAQRIRRSVIDCFERASLPN 213 (584)
Q Consensus 136 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~-~~~~~ipG~~~-~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 213 (584)
.+.. .. .....||.||+|||+. +..+++||.+. .++ .. ..+...............
T Consensus 218 ~~~~-----~~-----------~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~---~~---~~~l~~~~~~~~~~~~~~ 275 (485)
T TIGR01317 218 VDIS-----AD-----------ELKEQFDAVVLAGGATKPRDLPIPGRELKGIH---YA---MEFLPSATKALLGKDFKD 275 (485)
T ss_pred CccC-----HH-----------HHHhhCCEEEEccCCCCCCcCCCCCcCCCCcE---eH---HHHHHHHhhhhccccccc
Confidence 1111 00 1146799999999998 88889999642 222 11 111111000000000000
Q ss_pred CCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccc---------cHH--HHHH
Q 045826 214 LSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF---------DKR--ITAS 282 (584)
Q Consensus 214 ~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~---------~~~--~~~~ 282 (584)
++ .....+++|+|||||++|+|+|..+.+.+ ..+|++++..+..+... +.. ....
T Consensus 276 ~~-~~~~~gk~VvViGgG~~g~d~a~~a~~~g-------------a~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a 341 (485)
T TIGR01317 276 II-FIKAKGKKVVVIGGGDTGADCVGTSLRHG-------------AASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYA 341 (485)
T ss_pred cc-cccCCCCEEEEECCcHHHHHHHHHHHHcC-------------CCEEEEEEecCCChhhcccccCCCccchhhhhHHH
Confidence 00 01135789999999999999988877765 25899999887654321 111 1122
Q ss_pred HHHHHHhCCcEE-EeCCceeEEcCC---eE---EEE-----eCCC---------CeEEEEecceEEEccCCCCCchHHHH
Q 045826 283 AEEKFKRDGIDL-KTGSMVVKLSDK---EI---STK-----DRAT---------GQISSIPYGMVVWSTGIGTRPVIMDF 341 (584)
Q Consensus 283 ~~~~L~~~GV~v-~~~~~V~~v~~~---~v---~~~-----~~~~---------G~~~~i~~D~vI~a~G~~~~p~~~~l 341 (584)
.++..+..||.+ ++++.++++..+ .+ .+. ..++ |+..++++|.||+|+|+. .|+. .+
T Consensus 342 ~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~-~p~~-~~ 419 (485)
T TIGR01317 342 HEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFV-GPEQ-IL 419 (485)
T ss_pred HHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcC-CCcc-cc
Confidence 333334457654 567777777432 22 221 0012 334469999999999964 2333 35
Q ss_pred HHHhCC--cCCCceee-CCCCccCCCCCEEEeCcccc
Q 045826 342 MKQIGQ--ANRRVLAT-DEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 342 ~~~~~l--~~~g~i~V-d~~l~~~~~~~VfaiGD~a~ 375 (584)
++..++ +.+|.+.+ |++++| +.|+|||+|||+.
T Consensus 420 ~~~~gl~~~~~G~i~~~~~~~~T-s~~gVfAaGD~~~ 455 (485)
T TIGR01317 420 LDDFGVKKTRRGNISAGYDDYST-SIPGVFAAGDCRR 455 (485)
T ss_pred ccccCcccCCCCCEEecCCCceE-CCCCEEEeeccCC
Confidence 555565 55788855 567887 8999999999975
No 69
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.94 E-value=2.4e-25 Score=249.08 Aligned_cols=274 Identities=16% Similarity=0.226 Sum_probs=175.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
.+.++|+|||||++||++|..|++.|++|+|+|+.+..++. +.+.++...++ .++.....+++...|+++.+ +.++.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~-l~~gip~~~l~-~~~~~~~~~~~~~~Gv~~~~-~~~v~ 384 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM-LTFGIPPFKLD-KTVLSQRREIFTAMGIDFHL-NCEIG 384 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCe-eeccCCcccCC-HHHHHHHHHHHHHCCeEEEc-CCccC
Confidence 35789999999999999999999999999999999876653 33344444433 34444556777888844322 22221
Q ss_pred EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCC-CCCCCCCcccccccccCHHHHHHHHHHHH-HHHHHhcCC
Q 045826 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQA-NTFNTPGVVEHAHFLKEVEHAQRIRRSVI-DCFERASLP 212 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~~~~~l~-~~~~~~~~~ 212 (584)
+.+.+.. ....||.|++|||+.. ..+++||.+.. .+..+..+..... +.+......
T Consensus 385 ------~~~~~~~-----------l~~~~DaV~latGa~~~~~~~i~g~~~~-----gv~~a~~~l~~~~~~~~~~~~~~ 442 (639)
T PRK12809 385 ------RDITFSD-----------LTSEYDAVFIGVGTYGMMRADLPHEDAP-----GVIQALPFLTAHTRQLMGLPESE 442 (639)
T ss_pred ------CcCCHHH-----------HHhcCCEEEEeCCCCCCCCCCCCCCccC-----CcEeHHHHHHHHHHhhccCcccc
Confidence 1111111 1457999999999974 45678885421 1111222211111 110000000
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccc-cccccHHHHHHHHHHHHhCC
Q 045826 213 NLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHI-LNMFDKRITASAEEKFKRDG 291 (584)
Q Consensus 213 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i-l~~~~~~~~~~~~~~L~~~G 291 (584)
.. +.....+++|+|||+|.+++|+|..+.+++. .+|+++++.+.. ++..+.++ ..+++.|
T Consensus 443 ~~-~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga-------------~~Vt~v~rr~~~~~~~~~~e~-----~~a~~eG 503 (639)
T PRK12809 443 EY-PLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA-------------ASVTCAYRRDEVSMPGSRKEV-----VNAREEG 503 (639)
T ss_pred cc-ccccCCCCeEEEECCcHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHH-----HHHHHcC
Confidence 00 0012357899999999999999998877652 479999987655 56554443 2357789
Q ss_pred cEEEeCCceeEEcC---CeEE---EEeC---------------CCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--c
Q 045826 292 IDLKTGSMVVKLSD---KEIS---TKDR---------------ATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--A 348 (584)
Q Consensus 292 V~v~~~~~V~~v~~---~~v~---~~~~---------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~ 348 (584)
|++++++.++++.. +.|. +... ..|++.++++|+||+|+|+.++. ..+++..++ +
T Consensus 504 v~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~--~~~~~~~gl~~~ 581 (639)
T PRK12809 504 VEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHA--MPWLQGSGIKLD 581 (639)
T ss_pred CeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCc--cccccccCcccC
Confidence 99999999999852 2232 2111 02445579999999999965532 134455555 5
Q ss_pred CCCceeeCC----CCccCCCCCEEEeCcccc
Q 045826 349 NRRVLATDE----WLRVEGCESVYALGDCAT 375 (584)
Q Consensus 349 ~~g~i~Vd~----~l~~~~~~~VfaiGD~a~ 375 (584)
.+|.|.||+ ++|| +.|+|||+|||+.
T Consensus 582 ~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~ 611 (639)
T PRK12809 582 KWGLIQTGDVGYLPTQT-HLKKVFAGGDAVH 611 (639)
T ss_pred CCCCEEeCCCcccCccc-CCCCEEEcCCCCC
Confidence 678899985 3788 8999999999975
No 70
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.93 E-value=1.7e-24 Score=231.28 Aligned_cols=310 Identities=14% Similarity=0.113 Sum_probs=191.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhccc--CCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKS--NSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAE 132 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~--~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~ 132 (584)
..+++|+||||||||++||..|++ .|++|+|||+.+..++ .+.+.+.+.......+...+..++...+ ++|....
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG-lvr~gvaP~~~~~k~v~~~~~~~~~~~~--v~~~~nv 100 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG-LVRSGVAPDHPETKNVTNQFSRVATDDR--VSFFGNV 100 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc-eEeeccCCCcchhHHHHHHHHHHHHHCC--eEEEcCE
Confidence 456899999999999999999985 7999999999997655 3344554455455566667777777766 5554321
Q ss_pred EEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCC-CCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcC
Q 045826 133 CYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQA-NTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASL 211 (584)
Q Consensus 133 v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~ 211 (584)
.+ ++.+.+.. ....||+||+|||+.+ +.+++||.+.. .+.+..+.. .++....+...+
T Consensus 101 --~v---g~dvtl~~-----------L~~~yDaVIlAtGa~~~~~l~IpG~d~~--gV~~a~~fl---~~~ng~~d~~~~ 159 (491)
T PLN02852 101 --TL---GRDVSLSE-----------LRDLYHVVVLAYGAESDRRLGIPGEDLP--GVLSAREFV---WWYNGHPDCVHL 159 (491)
T ss_pred --EE---CccccHHH-----------HhhhCCEEEEecCCCCCCCCCCCCCCCC--CeEEHHHHH---HHhhcchhhhhh
Confidence 11 12233222 1347999999999985 67889996421 122222222 221110000000
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhC-----cCCC-CC-cEEEEecCCcccc-ccccHHHH---
Q 045826 212 PNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLY-----PSLK-EF-TRITLLEAGDHIL-NMFDKRIT--- 280 (584)
Q Consensus 212 ~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~-----~~~~-~~-~~V~lv~~~~~il-~~~~~~~~--- 280 (584)
......+++|+|||+|++|+|+|..|.+...+....+. ..++ .+ .+|+++.|....- +....++.
T Consensus 160 ----~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~ 235 (491)
T PLN02852 160 ----PPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELL 235 (491)
T ss_pred ----hhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHh
Confidence 00012467999999999999999999875211100000 0011 12 4699988876321 11111111
Q ss_pred ----------------------------------HHHHHHHHh---------CCcEEEeCCceeEEcC-----Ce---EE
Q 045826 281 ----------------------------------ASAEEKFKR---------DGIDLKTGSMVVKLSD-----KE---IS 309 (584)
Q Consensus 281 ----------------------------------~~~~~~L~~---------~GV~v~~~~~V~~v~~-----~~---v~ 309 (584)
+.+.+...+ ++|.|++....++|.. +. ++
T Consensus 236 ~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~ 315 (491)
T PLN02852 236 GLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVK 315 (491)
T ss_pred ccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEE
Confidence 112222222 5899999999999852 12 33
Q ss_pred EEeC--------------CCCeEEEEecceEEEccCCCCCchHHH-HHHHhCC--cCCCceeeCCCCccCCCCCEEEeCc
Q 045826 310 TKDR--------------ATGQISSIPYGMVVWSTGIGTRPVIMD-FMKQIGQ--ANRRVLATDEWLRVEGCESVYALGD 372 (584)
Q Consensus 310 ~~~~--------------~~G~~~~i~~D~vI~a~G~~~~p~~~~-l~~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD 372 (584)
+... .+|+..+++||.||.+.|+++.|+... +....++ +.+|+|.+|+..+| +.|+|||+||
T Consensus 316 ~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T-~ipGvyAaGD 394 (491)
T PLN02852 316 LERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGAD-TEPGLYVVGW 394 (491)
T ss_pred EEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCcc-CCCCEEEeee
Confidence 3310 146666799999999999876555431 2222233 56799999988777 7999999999
Q ss_pred cccccccchhhhHHHHhhhcc
Q 045826 373 CATINQRKVMEDISAIFSKAD 393 (584)
Q Consensus 373 ~a~~~~~~~~~~~~~~~~~a~ 393 (584)
|...+.+.+..+..++..++.
T Consensus 395 i~~Gp~gvI~t~~~dA~~ta~ 415 (491)
T PLN02852 395 LKRGPTGIIGTNLTCAEETVA 415 (491)
T ss_pred EecCCCCeeeecHhhHHHHHH
Confidence 999887777777777666554
No 71
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.93 E-value=8e-24 Score=225.80 Aligned_cols=268 Identities=25% Similarity=0.312 Sum_probs=204.7
Q ss_pred EEEECCcHHHHHHHHhccc--CCCeEEEEcCCCC--CCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEE
Q 045826 60 VVVLGTGWAGTTFLKILKS--NSFEVQVVSPRNY--FAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYK 135 (584)
Q Consensus 60 VVIVGgG~AGl~aA~~L~~--~g~~V~lid~~~~--~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~ 135 (584)
+||||+|++|+++|..|++ .+.+|+++..++. +...+..+.+..+......+..+.. ...+.++.+ +...+|..
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~-~~~~~v~~ 78 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDV-RTGTEVTS 78 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEE-eeCCEEEE
Confidence 5899999999999998874 5567776666654 4444555555555544444444333 223445443 45678999
Q ss_pred EecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCC
Q 045826 136 IDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLS 215 (584)
Q Consensus 136 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~ 215 (584)
+|++.+.+.+.++ ++.||+||+|||+.+..++ ....+..+.++..+++..++.....
T Consensus 79 id~~~~~v~~~~g-----------~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------- 135 (415)
T COG0446 79 IDPENKVVLLDDG-----------EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAEP----------- 135 (415)
T ss_pred ecCCCCEEEECCC-----------cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHhc-----------
Confidence 9999999998764 7899999999999998876 2223456788888888887766432
Q ss_pred HHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccccc-HHHHHHHHHHHHhCCcEE
Q 045826 216 DEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFD-KRITASAEEKFKRDGIDL 294 (584)
Q Consensus 216 ~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~-~~~~~~~~~~L~~~GV~v 294 (584)
.++++|||+|+.|+|+|..+.+.+ ++|++++..+++++.+. +.+.+.+.+.|+++||++
T Consensus 136 ------~~~v~vvG~G~~gle~A~~~~~~G--------------~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 195 (415)
T COG0446 136 ------PKDVVVVGAGPIGLEAAEAAAKRG--------------KKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVEL 195 (415)
T ss_pred ------cCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEE
Confidence 349999999999999999999865 89999999999999877 999999999999999999
Q ss_pred EeCCceeEEcCCe--EEE--EeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhC--C-cCCCceeeCCCCccCCCCCE
Q 045826 295 KTGSMVVKLSDKE--IST--KDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIG--Q-ANRRVLATDEWLRVEGCESV 367 (584)
Q Consensus 295 ~~~~~V~~v~~~~--v~~--~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~--l-~~~g~i~Vd~~l~~~~~~~V 367 (584)
++++.+.+|+.+. +.. ....+++. +++|.+++++|.+++. .+....+ + ...|+|.||+++++...++|
T Consensus 196 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~g~~p~~---~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v 270 (415)
T COG0446 196 LLGTKVVGVEGKGNTLVVERVVGIDGEE--IKADLVIIGPGERPNV---VLANDALPGLALAGGAVLVDERGGTSKDPDV 270 (415)
T ss_pred EeCCceEEEEcccCcceeeEEEEeCCcE--EEeeEEEEeecccccH---HHHhhCccceeccCCCEEEccccccCCCCCE
Confidence 9999999998653 111 12223554 9999999999975553 4444443 4 56678999999998338999
Q ss_pred EEeCcccccc
Q 045826 368 YALGDCATIN 377 (584)
Q Consensus 368 faiGD~a~~~ 377 (584)
||+|||+..+
T Consensus 271 ~a~GD~~~~~ 280 (415)
T COG0446 271 YAAGDVAEIP 280 (415)
T ss_pred EeccceEeee
Confidence 9999999864
No 72
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.92 E-value=8.4e-25 Score=210.52 Aligned_cols=287 Identities=17% Similarity=0.246 Sum_probs=206.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhccc-CC-CeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKS-NS-FEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAE 132 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~-~g-~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~ 132 (584)
.+..+|+|||||.+|++.|..+.+ .+ -+|.+||+..+|.|+|.+..+..|....+.......+++... ..++++.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~---a~wi~ek 113 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKG---ATWIKEK 113 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCC---cHHHHHH
Confidence 346799999999999999998873 33 479999999999999999988888876655555555555443 5578899
Q ss_pred EEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccc-----cccccCHHHHHHHHHHHHHHHH
Q 045826 133 CYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEH-----AHFLKEVEHAQRIRRSVIDCFE 207 (584)
Q Consensus 133 v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~-----~~~~~~~~~a~~~~~~l~~~~~ 207 (584)
|..++|++++|.+++++ +|.|||||||+|.+.++-.|+|+.|. +-..++...+.+....+.+.-+
T Consensus 114 v~~f~P~~N~v~t~gg~----------eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~ 183 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGE----------EISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKK 183 (446)
T ss_pred HHhcCCCcCeEEccCCc----------EEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccC
Confidence 99999999999998775 99999999999999998889998642 3344455555555444443221
Q ss_pred HhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHH--HHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHH
Q 045826 208 RASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDF--VIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEE 285 (584)
Q Consensus 208 ~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~--~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~ 285 (584)
. =+|.-=.++.+.||++-.+. ..+.+.+. ...++..+|+.-...+.++.- ....+.+++
T Consensus 184 G----------------NAIfTfPntpiKCAGAPQKi~yise~y~Rk-~gvRd~a~iiy~Tsl~~iFgV--k~Y~~AL~k 244 (446)
T KOG3851|consen 184 G----------------NAIFTFPNTPIKCAGAPQKIMYISESYFRK-RGVRDNANIIYNTSLPTIFGV--KHYADALEK 244 (446)
T ss_pred C----------------ceEEecCCCccccCCCchhhhhhhHHHHHH-hCccccccEEEecCccceecH--HHHHHHHHH
Confidence 1 12222223333344332211 11111111 223456777777777766553 567788888
Q ss_pred HHHhCCcEEEeCCceeEEcCC--eEEEEeCCC-CeEEEEecceEEEccCCCCCchHHHHHHHhCC-cCCCceeeCC-CCc
Q 045826 286 KFKRDGIDLKTGSMVVKLSDK--EISTKDRAT-GQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ-ANRRVLATDE-WLR 360 (584)
Q Consensus 286 ~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~-G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l-~~~g~i~Vd~-~l~ 360 (584)
..++++|++.+...+.+|..+ ..++++.+. |...+++++++-+.+..+++ +.+.+..+ +..|++.||. +||
T Consensus 245 ~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p----e~l~~s~~adktGfvdVD~~TlQ 320 (446)
T KOG3851|consen 245 VIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP----EVLANSDLADKTGFVDVDQSTLQ 320 (446)
T ss_pred HHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh----hhhhcCcccCcccceecChhhhc
Confidence 999999999999999999543 355555544 87778999999988775444 56666777 7789999995 899
Q ss_pred cCCCCCEEEeCcccccc
Q 045826 361 VEGCESVYALGDCATIN 377 (584)
Q Consensus 361 ~~~~~~VfaiGD~a~~~ 377 (584)
++.+||||+||||.+.|
T Consensus 321 s~kypNVFgiGDc~n~P 337 (446)
T KOG3851|consen 321 SKKYPNVFGIGDCMNLP 337 (446)
T ss_pred cccCCCceeeccccCCC
Confidence 99999999999999854
No 73
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.92 E-value=6e-24 Score=235.16 Aligned_cols=262 Identities=20% Similarity=0.273 Sum_probs=167.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEE-
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAEC- 133 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v- 133 (584)
...++|+|||+|++||++|..|++.|++|+++|+.+.+++. +.+.++...+. .++.....+.+.+.|+++.+ ...+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~-l~~gip~~~~~-~~~~~~~l~~~~~~Gv~~~~-~~~~~ 211 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGM-MRYGIPAYRLP-REVLDAEIQRILDLGVEVRL-GVRVG 211 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCe-eeecCCCccCC-HHHHHHHHHHHHHCCCEEEe-CCEEC
Confidence 45689999999999999999999999999999999887653 22333333332 23333334456667744322 2221
Q ss_pred EEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCC-CCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCC
Q 045826 134 YKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQA-NTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLP 212 (584)
Q Consensus 134 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~-~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 212 (584)
.++..+ . ....||++|+|+|+.. ....++|.... ....+..+.......
T Consensus 212 ~~~~~~-------~-----------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~-----gv~~~~~~l~~~~~~------- 261 (564)
T PRK12771 212 EDITLE-------Q-----------LEGEFDAVFVAIGAQLGKRLPIPGEDAA-----GVLDAVDFLRAVGEG------- 261 (564)
T ss_pred CcCCHH-------H-----------HHhhCCEEEEeeCCCCCCcCCCCCCccC-----CcEEHHHHHHHhhcc-------
Confidence 111110 0 1345999999999974 45577775321 111111111111100
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcc-ccccccHHHHHHHHHHHHhCC
Q 045826 213 NLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDH-ILNMFDKRITASAEEKFKRDG 291 (584)
Q Consensus 213 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-il~~~~~~~~~~~~~~L~~~G 291 (584)
+ ....+++|+|||+|.+++|++..+.+++ ..+|+++++.+. .++.....+ +.+.+.|
T Consensus 262 --~--~~~~gk~v~ViGgg~~a~d~a~~a~~lg-------------a~~v~ii~r~~~~~~~~~~~~~-----~~a~~~G 319 (564)
T PRK12771 262 --E--PPFLGKRVVVIGGGNTAMDAARTARRLG-------------AEEVTIVYRRTREDMPAHDEEI-----EEALREG 319 (564)
T ss_pred --C--CcCCCCCEEEECChHHHHHHHHHHHHcC-------------CCEEEEEEecCcccCCCCHHHH-----HHHHHcC
Confidence 0 1134679999999999999998877764 257888888764 244443333 3455689
Q ss_pred cEEEeCCceeEEcCC--e---EE---EEeC---C-------CCeEEEEecceEEEccCCCCCchHHHHHHH-hCC-cCCC
Q 045826 292 IDLKTGSMVVKLSDK--E---IS---TKDR---A-------TGQISSIPYGMVVWSTGIGTRPVIMDFMKQ-IGQ-ANRR 351 (584)
Q Consensus 292 V~v~~~~~V~~v~~~--~---v~---~~~~---~-------~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~-~~l-~~~g 351 (584)
|++++++.++++..+ + ++ +... . +|+..++++|+||+|+|+.+.. .++++ .++ +.+|
T Consensus 320 Vki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~---~~~~~~~gl~~~~G 396 (564)
T PRK12771 320 VEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS---AGLESVPGVEVGRG 396 (564)
T ss_pred CEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCch---hhhhhccCcccCCC
Confidence 999999999999643 2 11 2110 1 2444579999999999965543 34443 344 5678
Q ss_pred ceeeCC-CCccCCCCCEEEeCcccc
Q 045826 352 VLATDE-WLRVEGCESVYALGDCAT 375 (584)
Q Consensus 352 ~i~Vd~-~l~~~~~~~VfaiGD~a~ 375 (584)
+|.||+ +++| +.|+|||+|||+.
T Consensus 397 ~i~vd~~~~~t-s~~~Vfa~GD~~~ 420 (564)
T PRK12771 397 VVQVDPNFMMT-GRPGVFAGGDMVP 420 (564)
T ss_pred CEEeCCCCccC-CCCCEEeccCcCC
Confidence 999998 5555 8999999999974
No 74
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3e-24 Score=208.82 Aligned_cols=282 Identities=20% Similarity=0.265 Sum_probs=205.4
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccc----ccc-ccccCcccccHHHHHHHHHcCCcEE
Q 045826 53 GEFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLP----SVT-NGTVEARSIVEPIRNIVRKKGMDIQ 127 (584)
Q Consensus 53 ~~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~----~~~-~g~~~~~~i~~~~~~~~~~~g~~v~ 127 (584)
.....++|+||||||||-++|.+.+++|.+.=|+-. .|+++.+-. .+. ....+...+...++...+++.+++.
T Consensus 207 ~~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDim 284 (520)
T COG3634 207 NAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVM 284 (520)
T ss_pred hccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhh
Confidence 345679999999999999999999999998777643 367765421 111 1122233556667788888875431
Q ss_pred EEEEEEEEEecC-----CCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCccccc---ccccCHHHHHHHH
Q 045826 128 FKEAECYKIDAE-----KKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHA---HFLKEVEHAQRIR 199 (584)
Q Consensus 128 ~~~~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~---~~~~~~~~a~~~~ 199 (584)
--.+++.+.+. -..|++.++. .+....+|++||++++..++||-+++. ..++
T Consensus 285 -n~qra~~l~~a~~~~~l~ev~l~nGa----------vLkaktvIlstGArWRn~nvPGE~e~rnKGVayC--------- 344 (520)
T COG3634 285 -NLQRASKLEPAAVEGGLIEVELANGA----------VLKARTVILATGARWRNMNVPGEDEYRNKGVAYC--------- 344 (520)
T ss_pred -hhhhhhcceecCCCCccEEEEecCCc----------eeccceEEEecCcchhcCCCCchHHHhhCCeeeC---------
Confidence 12234455442 2256666654 899999999999999999999976531 0000
Q ss_pred HHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHH
Q 045826 200 RSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRI 279 (584)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~ 279 (584)
|. ....-.++|+|+|||||++|+|.|-.|+-.. .+||+++-.+.+ +.
T Consensus 345 ------------PH-CDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eL------kA 391 (520)
T COG3634 345 ------------PH-CDGPLFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEL------KA 391 (520)
T ss_pred ------------CC-CCCcccCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhh------hh
Confidence 00 0112367899999999999999999999886 589999865543 23
Q ss_pred HHHHHHHHHh-CCcEEEeCCceeEEcCC-----eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCCcCCCce
Q 045826 280 TASAEEKFKR-DGIDLKTGSMVVKLSDK-----EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVL 353 (584)
Q Consensus 280 ~~~~~~~L~~-~GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~~~g~i 353 (584)
-+.+++.|.. .+|++++|..-++|.++ ++...+..+|+...++-+-|++-+| -.|++++|-..+.++.+|.|
T Consensus 392 D~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIG--L~PNT~WLkg~vel~~rGEI 469 (520)
T COG3634 392 DAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIG--LLPNTEWLKGAVELNRRGEI 469 (520)
T ss_pred HHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEe--cccChhHhhchhhcCcCccE
Confidence 3456677765 49999999999999776 3677777788877788899999999 67888766556677899999
Q ss_pred eeCCCCccCCCCCEEEeCccccccccchhhhHHHHhhhc
Q 045826 354 ATDEWLRVEGCESVYALGDCATINQRKVMEDISAIFSKA 392 (584)
Q Consensus 354 ~Vd~~l~~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~a 392 (584)
.||....| +.|+|||+|||+..+..++.-+++++..++
T Consensus 470 ivD~~g~T-svpGvFAAGD~T~~~yKQIIIamG~GA~Aa 507 (520)
T COG3634 470 IVDARGET-NVPGVFAAGDCTTVPYKQIIIAMGEGAKAS 507 (520)
T ss_pred EEecCCCc-CCCceeecCcccCCccceEEEEecCcchhh
Confidence 99999998 999999999999988776655555554443
No 75
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.6e-24 Score=193.72 Aligned_cols=287 Identities=17% Similarity=0.253 Sum_probs=209.9
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC----CCCCC-------ccccccccccCcccccHHHHHHHHHcCCc
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY----FAFTP-------LLPSVTNGTVEARSIVEPIRNIVRKKGMD 125 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~----~~~~p-------~~~~~~~g~~~~~~i~~~~~~~~~~~g~~ 125 (584)
+.+|+|||+|||+.++|.++++..++-+|+|-.-. .+++. .+|.++.|. ...++.+.+++...++|
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi-~G~~l~d~mrkqs~r~G-- 84 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGI-TGPELMDKMRKQSERFG-- 84 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCccc-ccHHHHHHHHHHHHhhc--
Confidence 45899999999999999999999999999994311 11111 123333333 23367788888888888
Q ss_pred EEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHH
Q 045826 126 IQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDC 205 (584)
Q Consensus 126 v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~ 205 (584)
.+++..+|..+|...+-+.+.... ..+.+|.+|+|||+......+||..+.-+--+. +..+
T Consensus 85 t~i~tEtVskv~~sskpF~l~td~---------~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrG----------iSaC 145 (322)
T KOG0404|consen 85 TEIITETVSKVDLSSKPFKLWTDA---------RPVTADAVILATGASAKRLHLPGEGEGEFWQRG----------ISAC 145 (322)
T ss_pred ceeeeeehhhccccCCCeEEEecC---------CceeeeeEEEecccceeeeecCCCCcchHHhcc----------cchh
Confidence 567899999999999977776532 289999999999999888888886432111111 1111
Q ss_pred HHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHH
Q 045826 206 FERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEE 285 (584)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~ 285 (584)
.-+. . .....+.|..+|||||.+++|-|..|..++ .+|++++|.+.+ +.+..+++
T Consensus 146 AVCD---G--aapifrnk~laVIGGGDsA~EEA~fLtkya--------------skVyii~Rrd~f------RAs~~Mq~ 200 (322)
T KOG0404|consen 146 AVCD---G--AAPIFRNKPLAVIGGGDSAMEEALFLTKYA--------------SKVYIIHRRDHF------RASKIMQQ 200 (322)
T ss_pred hccc---C--cchhhcCCeeEEEcCcHHHHHHHHHHHhhc--------------cEEEEEEEhhhh------hHHHHHHH
Confidence 0000 0 111256779999999999999999999987 799999999876 33344444
Q ss_pred -HHHhCCcEEEeCCceeEEcCC-----eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCCcCCCceeeCCCC
Q 045826 286 -KFKRDGIDLKTGSMVVKLSDK-----EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEWL 359 (584)
Q Consensus 286 -~L~~~GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~~~g~i~Vd~~l 359 (584)
.++..+|++++|+.+.+...+ ++.+++.++|+...++.+-+++++| ..|+++.+-.+..++.+|+|.+-+.-
T Consensus 201 ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IG--H~Pat~~l~gqve~d~~GYi~t~pgt 278 (322)
T KOG0404|consen 201 RAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIG--HSPATKFLKGQVELDEDGYIVTRPGT 278 (322)
T ss_pred HHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEec--CCchhhHhcCceeeccCceEEeccCc
Confidence 445569999999999988665 4778888889888899999999999 67777555445566889999998644
Q ss_pred ccCCCCCEEEeCccccccccchhhhHHHHhhhc
Q 045826 360 RVEGCESVYALGDCATINQRKVMEDISAIFSKA 392 (584)
Q Consensus 360 ~~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~a 392 (584)
..++.|++||+||+..-..++..+++..++.++
T Consensus 279 s~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaa 311 (322)
T KOG0404|consen 279 SLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAA 311 (322)
T ss_pred ccccccceeeccccchHHHHHHHhhhccchhhh
Confidence 334899999999999876666666666555544
No 76
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.91 E-value=2.9e-22 Score=233.69 Aligned_cols=287 Identities=15% Similarity=0.127 Sum_probs=179.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEE-EEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQF-KEAECY 134 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~-~~~~v~ 134 (584)
..++|+|||||||||+||..|++.|++|+|||+++..++...............+....+...+...+ ++++ ...+|.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~-~v~v~~~t~V~ 240 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMP-EVTLLPRTTAF 240 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCC-CcEEEcCCEEE
Confidence 35799999999999999999999999999999998877654322111111122233333444454443 2333 357788
Q ss_pred EEecCCCEEEEeecCc------cCCCCCceEEEeCCEEEEccCCCCCCCCCCCccc-ccccccCHHHHHHHHHHHHHHHH
Q 045826 135 KIDAEKKQIYCRTTED------RTCGGKEEFALDYDILVIAMGAQANTFNTPGVVE-HAHFLKEVEHAQRIRRSVIDCFE 207 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~------~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~-~~~~~~~~~~a~~~~~~l~~~~~ 207 (584)
.++.......+..... ..........+.||+||||||+.++.+++||.+. .++.. ..+..+ + .
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~---~~~~~~---l----~ 310 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLA---GAARTY---L----N 310 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEc---hHHHHH---H----H
Confidence 8766433222211000 0000011236899999999999999999999753 22221 111111 1 1
Q ss_pred HhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHH
Q 045826 208 RASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKF 287 (584)
Q Consensus 208 ~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L 287 (584)
... ...+++|+|||+|++|+|+|..|.+.+. ..|++++..+.+. ..+.+.|
T Consensus 311 ~~~--------~~~gk~VvViG~G~~g~e~A~~L~~~G~-------------~vV~vv~~~~~~~--------~~l~~~L 361 (985)
T TIGR01372 311 RYG--------VAPGKRIVVATNNDSAYRAAADLLAAGI-------------AVVAIIDARADVS--------PEARAEA 361 (985)
T ss_pred hhC--------cCCCCeEEEECCCHHHHHHHHHHHHcCC-------------ceEEEEccCcchh--------HHHHHHH
Confidence 000 1245699999999999999999998651 4688888776442 2356778
Q ss_pred HhCCcEEEeCCceeEEcCC----eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCCcCCCceeeCCC----C
Q 045826 288 KRDGIDLKTGSMVVKLSDK----EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEW----L 359 (584)
Q Consensus 288 ~~~GV~v~~~~~V~~v~~~----~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~~~g~i~Vd~~----l 359 (584)
++.||++++++.|+++.++ +|++... +|+..++++|.|+++.|. .|++ .+...++.. +..|+. .
T Consensus 362 ~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~-~g~~~~i~~D~V~va~G~--~Pnt-~L~~~lg~~----~~~~~~~~~~~ 433 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEGGKRVSGVAVARN-GGAGQRLEADALAVSGGW--TPVV-HLFSQRGGK----LAWDAAIAAFL 433 (985)
T ss_pred HHcCCEEEcCCeEEEEecCCcEEEEEEEec-CCceEEEECCEEEEcCCc--Cchh-HHHHhcCCC----eeeccccCcee
Confidence 9999999999999999764 3455421 233335999999999995 5545 455555431 222221 1
Q ss_pred ccCCCCCEEEeCccccccccchhhhHHHHhhhc
Q 045826 360 RVEGCESVYALGDCATINQRKVMEDISAIFSKA 392 (584)
Q Consensus 360 ~~~~~~~VfaiGD~a~~~~~~~~~~~~~~~~~a 392 (584)
..++.|+||++|||+.+. .+..++.++..++
T Consensus 434 ~~t~v~gVyaaGD~~g~~--~~~~A~~eG~~Aa 464 (985)
T TIGR01372 434 PGDAVQGCILAGAANGLF--GLAAALADGAAAG 464 (985)
T ss_pred cCCCCCCeEEeeccCCcc--CHHHHHHHHHHHH
Confidence 123689999999999753 3444555555444
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.89 E-value=7.1e-22 Score=211.88 Aligned_cols=255 Identities=15% Similarity=0.192 Sum_probs=167.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcccc----------------------------------
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPS---------------------------------- 100 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~---------------------------------- 100 (584)
...++|+|||||+|||+||++|++.|++|+|+|+++..++.+....
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 3468999999999999999999999999999999987765432110
Q ss_pred ---ccc-cc-----------cCcccccHHHHHHHHHcCCc--EEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeC
Q 045826 101 ---VTN-GT-----------VEARSIVEPIRNIVRKKGMD--IQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDY 163 (584)
Q Consensus 101 ---~~~-g~-----------~~~~~i~~~~~~~~~~~g~~--v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~y 163 (584)
.+. .. ....++...++++.+.+++. ++ ++.+|+.|++.++...+....+ +....+..|
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~-~~t~V~~V~~~~~~w~V~~~~~----~~~~~~~~~ 162 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVR-FETEVVRVEPVDGKWRVQSKNS----GGFSKDEIF 162 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEE-ecCEEEEEeecCCeEEEEEEcC----CCceEEEEc
Confidence 000 00 01124556677777777765 43 4788999998776555543211 111125689
Q ss_pred CEEEEccC--CCCCCCCCCCccccc---ccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHH
Q 045826 164 DILVIAMG--AQANTFNTPGVVEHA---HFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFA 238 (584)
Q Consensus 164 D~LVlAtG--s~~~~~~ipG~~~~~---~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A 238 (584)
|+||+|+| +.|+.|.+||+++.. +...... .....++++|+|||+|++|+|+|
T Consensus 163 d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr----------------------~~~~~~gk~VvVVG~G~Sg~diA 220 (461)
T PLN02172 163 DAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYR----------------------VPDPFKNEVVVVIGNFASGADIS 220 (461)
T ss_pred CEEEEeccCCCCCcCCCCCCcccCCceEEEecccC----------------------CccccCCCEEEEECCCcCHHHHH
Confidence 99999999 578999999985421 1111110 01124678999999999999999
Q ss_pred HHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC-CeEEEEeCCCCe
Q 045826 239 AALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD-KEISTKDRATGQ 317 (584)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~-~~v~~~~~~~G~ 317 (584)
.+|.... .+|+++++...+.. .+.+......+..+..|..+.. +.|++.+ |+
T Consensus 221 ~~L~~~a--------------~~V~l~~r~~~~~~----------~~~~~~~~~~v~~~~~I~~~~~~g~V~f~D---G~ 273 (461)
T PLN02172 221 RDIAKVA--------------KEVHIASRASESDT----------YEKLPVPQNNLWMHSEIDTAHEDGSIVFKN---GK 273 (461)
T ss_pred HHHHHhC--------------CeEEEEEeeccccc----------cccCcCCCCceEECCcccceecCCeEEECC---CC
Confidence 9999875 69999998764311 0112222345566777777644 4477765 87
Q ss_pred EEEEecceEEEccCCCCCchHHHHHHHhCCcCCCceeeCCC--------CccCC-CCCEEEeCcc
Q 045826 318 ISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEW--------LRVEG-CESVYALGDC 373 (584)
Q Consensus 318 ~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~~~g~i~Vd~~--------l~~~~-~~~VfaiGD~ 373 (584)
. +++|.||+|||+..+- .|++. .|.+.+|++ .-.+. .|+++.+|=+
T Consensus 274 ~--~~~D~Ii~~TGy~~~~---pfL~~-----~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~ 328 (461)
T PLN02172 274 V--VYADTIVHCTGYKYHF---PFLET-----NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLP 328 (461)
T ss_pred C--ccCCEEEECCcCCccc---cccCc-----ccceeeCCCcchhhHHhhcCCCCCCcEEEEecc
Confidence 5 8899999999976542 33332 344555532 11233 3788888855
No 78
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.82 E-value=3.1e-19 Score=177.54 Aligned_cols=276 Identities=17% Similarity=0.293 Sum_probs=195.0
Q ss_pred CeEEEECCcHHHHHHHHhcc--cCCCeEEEEcCCCCCCCC--Cccccc----------------cccc-----cCccccc
Q 045826 58 KKVVVLGTGWAGTTFLKILK--SNSFEVQVVSPRNYFAFT--PLLPSV----------------TNGT-----VEARSIV 112 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~--~~g~~V~lid~~~~~~~~--p~~~~~----------------~~g~-----~~~~~i~ 112 (584)
..-+|||+|.+..+++...+ ..+.+|.+|...+...|. |+...+ ..|. .+++.+.
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ff 258 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFF 258 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcce
Confidence 35789999999998887776 567899999888776663 221110 0010 0111222
Q ss_pred HHHHHHHHHcCCcEEEEEE-EEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC-CCC----ccccc
Q 045826 113 EPIRNIVRKKGMDIQFKEA-ECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN-TPG----VVEHA 186 (584)
Q Consensus 113 ~~~~~~~~~~g~~v~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~-ipG----~~~~~ 186 (584)
..-+++-+..+-.|-++++ .|..||.+.+.|.+.++. +|.||.++||||.+|.... +.. +.+..
T Consensus 259 vspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~----------~I~YdkcLIATG~~Pk~l~~~~~A~~evk~ki 328 (659)
T KOG1346|consen 259 VSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGT----------TIGYDKCLIATGVRPKKLQVFEEASEEVKQKI 328 (659)
T ss_pred eChhHCcccccCceEEEeccceEEeecccCeEEecCCc----------EeehhheeeecCcCcccchhhhhcCHHhhhhe
Confidence 2222322211112444544 688999999999999876 9999999999999987653 222 22344
Q ss_pred ccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEec
Q 045826 187 HFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLE 266 (584)
Q Consensus 187 ~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~ 266 (584)
..++...|..++.+-+.+ .++|.|||+|+.|.|+|+.|.+..+. .+.+|+-+-
T Consensus 329 t~fr~p~DF~rlek~~ae-----------------k~siTIiGnGflgSELacsl~rk~r~----------~g~eV~QvF 381 (659)
T KOG1346|consen 329 TYFRYPADFKRLEKGLAE-----------------KQSITIIGNGFLGSELACSLKRKYRN----------EGVEVHQVF 381 (659)
T ss_pred eEEecchHHHHHHHhhhh-----------------cceEEEEcCcchhhhHHHHHHHhhhc----------cCcEEEEee
Confidence 556677776666554422 25999999999999999999886431 367888776
Q ss_pred CCccccc-cccHHHHHHHHHHHHhCCcEEEeCCceeEEcCC--eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHH
Q 045826 267 AGDHILN-MFDKRITASAEEKFKRDGIDLKTGSMVVKLSDK--EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMK 343 (584)
Q Consensus 267 ~~~~il~-~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~ 343 (584)
.....+. -++..+++...+.+++.||.++.+..|.++... .+.++- ++|.+ +..|+||.|+| -.|++ .+.+
T Consensus 382 ~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL-~dG~~--l~tD~vVvavG--~ePN~-ela~ 455 (659)
T KOG1346|consen 382 EEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKL-SDGSE--LRTDLVVVAVG--EEPNS-ELAE 455 (659)
T ss_pred cccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEe-cCCCe--eeeeeEEEEec--CCCch-hhcc
Confidence 5554443 256788899999999999999999999988543 355543 45886 99999999999 56666 5777
Q ss_pred HhCC--cC-CCceeeCCCCccCCCCCEEEeCccccccc
Q 045826 344 QIGQ--AN-RRVLATDEWLRVEGCESVYALGDCATINQ 378 (584)
Q Consensus 344 ~~~l--~~-~g~i~Vd~~l~~~~~~~VfaiGD~a~~~~ 378 (584)
..++ +. -|.+.||..|+. ..|||++||++.+..
T Consensus 456 ~sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 456 ASGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFED 491 (659)
T ss_pred cccceeecccCcEEeeheeec--ccceeeecchhhhhc
Confidence 7776 43 388999999987 789999999998753
No 79
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.82 E-value=2.1e-19 Score=190.42 Aligned_cols=281 Identities=19% Similarity=0.191 Sum_probs=185.1
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEE
Q 045826 54 EFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAEC 133 (584)
Q Consensus 54 ~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v 133 (584)
..+.++|.|||||||||++|..|.+.|++||++|+.+..++ -+.+.++..++ +.++.+...+++.+.| ++|.....
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG-ll~yGIP~~kl-~k~i~d~~i~~l~~~G--v~~~~~~~ 195 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG-LLLYGIPDFKL-PKDILDRRLELLERSG--VEFKLNVR 195 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce-eEEecCchhhc-cchHHHHHHHHHHHcC--eEEEEcce
Confidence 44568999999999999999999999999999999887665 35555555554 4578888888999998 44433322
Q ss_pred EEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCC-CCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCC
Q 045826 134 YKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ-ANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLP 212 (584)
Q Consensus 134 ~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 212 (584)
...| ++++. ..-.||++++++|+. |+..++||.+ ...+..|..+...+........ +
T Consensus 196 vG~~-----it~~~-----------L~~e~Dav~l~~G~~~~~~l~i~g~d-----~~gv~~A~dfL~~~~~~~~~~~-~ 253 (457)
T COG0493 196 VGRD-----ITLEE-----------LLKEYDAVFLATGAGKPRPLDIPGED-----AKGVAFALDFLTRLNKEVLGDF-A 253 (457)
T ss_pred ECCc-----CCHHH-----------HHHhhCEEEEeccccCCCCCCCCCcC-----CCcchHHHHHHHHHHHHHhccc-c
Confidence 2221 11111 145679999999996 7888999964 2234445554444332221110 0
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccc--cccccHHHHHHHHHHHHhC
Q 045826 213 NLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHI--LNMFDKRITASAEEKFKRD 290 (584)
Q Consensus 213 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i--l~~~~~~~~~~~~~~L~~~ 290 (584)
. .......+++|+|||+|.|+++++....+.+. .+|+.+++...- .+..+........+...+.
T Consensus 254 ~-~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~ee 319 (457)
T COG0493 254 E-DRTPPAKGKRVVVIGGGDTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLEVRSAGEE 319 (457)
T ss_pred c-ccCCCCCCCeEEEECCCCCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhhhhhhhhc
Confidence 0 01111345899999999999999988887763 477777522211 1222222344555777788
Q ss_pred CcEEEeCCceeEEcC---CeEEEE---e---C-------------CCCeEEEEecceEEEccCCCCCchHHHHHH-HhCC
Q 045826 291 GIDLKTGSMVVKLSD---KEISTK---D---R-------------ATGQISSIPYGMVVWSTGIGTRPVIMDFMK-QIGQ 347 (584)
Q Consensus 291 GV~v~~~~~V~~v~~---~~v~~~---~---~-------------~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~-~~~l 347 (584)
|+++.......++.. +.|.-. . . ..|++..+++|+|+.|.|+.+++....... .+.+
T Consensus 320 g~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~ 399 (457)
T COG0493 320 GVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKL 399 (457)
T ss_pred CCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCccccccccccccc
Confidence 988888877777753 222211 1 0 135666799999999999766643311111 2334
Q ss_pred cCCCceeeCCCC-ccCCCCCEEEeCcccc
Q 045826 348 ANRRVLATDEWL-RVEGCESVYALGDCAT 375 (584)
Q Consensus 348 ~~~g~i~Vd~~l-~~~~~~~VfaiGD~a~ 375 (584)
+.+|.+.+|+.+ +| +.|++||.||+..
T Consensus 400 ~~~g~i~~~~~~~~t-s~~~vfa~gD~~~ 427 (457)
T COG0493 400 DKRGRIKVDENLQQT-SIPGVFAGGDAVR 427 (457)
T ss_pred CCCCceecccccccc-cCCCeeeCceecc
Confidence 778999999988 66 8999999999986
No 80
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.81 E-value=7.8e-19 Score=196.44 Aligned_cols=255 Identities=16% Similarity=0.219 Sum_probs=145.4
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC--------------CCCCCcccccc---ccccCcc------
Q 045826 53 GEFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY--------------FAFTPLLPSVT---NGTVEAR------ 109 (584)
Q Consensus 53 ~~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~--------------~~~~p~~~~~~---~g~~~~~------ 109 (584)
...+.++|+||||||||+++|+.|++.|++|||+|+.+. ..|.++++... .|.+...
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~ 458 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRW 458 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccc
Confidence 345678999999999999999999999999999998532 23344444433 2222111
Q ss_pred --cccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCC-CCCCCCCCCccccc
Q 045826 110 --SIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGA-QANTFNTPGVVEHA 186 (584)
Q Consensus 110 --~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs-~~~~~~ipG~~~~~ 186 (584)
+....++.++. .+.++++..+.....|.. .++. ....||+|+||||+ .|+.+++||.+.
T Consensus 459 ~k~~l~~i~~il~-~g~~v~~~~gv~lG~dit-----~edl----------~~~gyDAV~IATGA~kpr~L~IPGeda-- 520 (1028)
T PRK06567 459 DKNNLDILRLILE-RNNNFKYYDGVALDFNIT-----KEQA----------FDLGFDHIAFCIGAGQPKVLDIENFEA-- 520 (1028)
T ss_pred hHHHHHHHHHHHh-cCCceEEECCeEECccCC-----HHHH----------hhcCCCEEEEeCCCCCCCCCCCCCccC--
Confidence 11222233332 344566654433222221 1111 15679999999999 699999999652
Q ss_pred ccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHH--------HHHhHhhhCcCC--
Q 045826 187 HFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDF--------VIDDLSKLYPSL-- 256 (584)
Q Consensus 187 ~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~--------~~~~~~~~~~~~-- 256 (584)
..+.+..+.+...+.. ..++.... .....+++|||||||++|+|+|.+...+ ....+.+.||..
T Consensus 521 ~GV~sA~DfL~~l~~~-~~~~~~~~-----~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~ 594 (1028)
T PRK06567 521 KGVKTASDFLMTLQSG-GAFLKNSN-----TNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDK 594 (1028)
T ss_pred CCeEEHHHHHHHHhhc-cccccccc-----CcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccH
Confidence 3344444433221110 00110000 0112457999999999999999955431 111111111110
Q ss_pred --------------------------CCCcEEEEecCCccc-cccc---cHHHHHHHHHHHHhCCcEEEeCCceeEEcCC
Q 045826 257 --------------------------KEFTRITLLEAGDHI-LNMF---DKRITASAEEKFKRDGIDLKTGSMVVKLSDK 306 (584)
Q Consensus 257 --------------------------~~~~~V~lv~~~~~i-l~~~---~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~ 306 (584)
...-.|++++|...- +|.. ..++ +...+.||+|+.+..+.++..+
T Consensus 595 eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~empA~~~~~eEv-----~~A~eEGV~f~~~~~P~~i~~d 669 (1028)
T PRK06567 595 EIAEEFIAHAKLFKEAKNNEELRKVFNKLGGATVYYRGRLQDSPAYKLNHEEL-----IYALALGVDFKENMQPLRINVD 669 (1028)
T ss_pred HHHHHHHHHHHhhcchhccchhhhhhccCCceEEEecCChhhCCCCCCCHHHH-----HHHHHcCcEEEecCCcEEEEec
Confidence 011228888887642 4432 2222 3445679999999999998532
Q ss_pred ---e---EEEEeC------------CCC-------------eEEEEecceEEEccCCCCCchH
Q 045826 307 ---E---ISTKDR------------ATG-------------QISSIPYGMVVWSTGIGTRPVI 338 (584)
Q Consensus 307 ---~---v~~~~~------------~~G-------------~~~~i~~D~vI~a~G~~~~p~~ 338 (584)
. +++... +++ ++.+|+||.||+|+|. .|++
T Consensus 670 ~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~--~~~~ 730 (1028)
T PRK06567 670 KYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI--ENNT 730 (1028)
T ss_pred CCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc--CCcc
Confidence 2 223210 112 4457999999999994 5444
No 81
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.80 E-value=5.3e-19 Score=192.17 Aligned_cols=164 Identities=22% Similarity=0.296 Sum_probs=100.9
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcccc------------c--------------c--cc---c
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPS------------V--------------T--NG---T 105 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~------------~--------------~--~g---~ 105 (584)
+|+|+|||||++||++|+.|.+.|++++++|+++..++.+.... . + .+ -
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 47999999999999999999999999999999998887543210 0 0 00 0
Q ss_pred cCcccccHHHHHHHHHcCC--cEEEEEEEEEEEecCC-----CEEEEeecCccCCCCCceEEEeCCEEEEccCCC--CCC
Q 045826 106 VEARSIVEPIRNIVRKKGM--DIQFKEAECYKIDAEK-----KQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ--ANT 176 (584)
Q Consensus 106 ~~~~~i~~~~~~~~~~~g~--~v~~~~~~v~~id~~~-----~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~--~~~ 176 (584)
....++..+++.+.+++++ .++ .+.+|+.+.... ..-.+.... +.+..+..||+||+|+|.. |+.
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~-fnt~V~~v~~~~d~~~~~~W~V~~~~-----~g~~~~~~fD~VvvatG~~~~P~~ 154 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIR-FNTEVVSVERDPDFSATGKWEVTTEN-----DGKEETEEFDAVVVATGHFSKPNI 154 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEE-TSEEEEEEEEETTTT-ETEEEEEETT-----TTEEEEEEECEEEEEE-SSSCESB
T ss_pred CCHHHHHHHHHHHHhhhCCcceEE-EccEEeEeeeccccCCCceEEEEeec-----CCeEEEEEeCeEEEcCCCcCCCCC
Confidence 0113466667888887764 343 377888886532 223332221 1223466799999999974 777
Q ss_pred CC--CCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHH
Q 045826 177 FN--TPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFV 245 (584)
Q Consensus 177 ~~--ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~ 245 (584)
|. +||++++.-.+- ++..++ ..+..++|+|+|||+|.+|+|+|.+++...
T Consensus 155 P~~~~~G~e~F~G~i~---HS~~yr----------------~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a 206 (531)
T PF00743_consen 155 PEPSFPGLEKFKGEII---HSKDYR----------------DPEPFKGKRVLVVGGGNSGADIAVELSRVA 206 (531)
T ss_dssp -----CTGGGHCSEEE---EGGG------------------TGGGGTTSEEEEESSSHHHHHHHHHHTTTS
T ss_pred ChhhhhhhhcCCeeEE---ccccCc----------------ChhhcCCCEEEEEeCCHhHHHHHHHHHHhc
Confidence 74 888864321111 111111 123367899999999999999999997643
No 82
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.76 E-value=8.1e-20 Score=175.27 Aligned_cols=140 Identities=26% Similarity=0.387 Sum_probs=87.2
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC-cccc-ccccccCcccccH-----HHHHHHHHcCCcEEE-EE
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP-LLPS-VTNGTVEARSIVE-----PIRNIVRKKGMDIQF-KE 130 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p-~~~~-~~~g~~~~~~i~~-----~~~~~~~~~g~~v~~-~~ 130 (584)
||||||||+||++||.+|++.+++|+|||+.+...+.. .++. ............. .+.+.+...+ +++ +.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~ 78 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRG--VEIRLN 78 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHT--HEEEHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccce--EEEeec
Confidence 79999999999999999999999999999887533321 1111 1100000001111 3333334555 444 67
Q ss_pred EEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHH
Q 045826 131 AECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRS 201 (584)
Q Consensus 131 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~ 201 (584)
+++..|+...+.+................++.||+||+|||+.|+.|++||. +.....+...++..+.+.
T Consensus 79 ~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~ 148 (201)
T PF07992_consen 79 AKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLEL 148 (201)
T ss_dssp HTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTH
T ss_pred cccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCC-cccccccccccccccccc
Confidence 8999999999864211000000001123589999999999999999999997 344455666666665443
No 83
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.76 E-value=3.2e-18 Score=186.26 Aligned_cols=290 Identities=20% Similarity=0.266 Sum_probs=167.8
Q ss_pred CCCCCCCCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEE
Q 045826 48 GDSGEGEFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQ 127 (584)
Q Consensus 48 ~~~~~~~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~ 127 (584)
.+..+...+.++|.|||+|||||+||-.|.+.|+.|+++||.+..++ .+.|.++.=+++. .+++.--+++.+.| ++
T Consensus 1776 ~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg-ll~ygipnmkldk-~vv~rrv~ll~~eg--i~ 1851 (2142)
T KOG0399|consen 1776 KPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG-LLMYGIPNMKLDK-FVVQRRVDLLEQEG--IR 1851 (2142)
T ss_pred ccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc-eeeecCCccchhH-HHHHHHHHHHHhhC--ce
Confidence 34445556789999999999999999999999999999999998776 3556666555444 36666778888888 44
Q ss_pred EEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCC-CCCCCCCCcccccccccCHHHHHHHHHHHHHHH
Q 045826 128 FKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ-ANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCF 206 (584)
Q Consensus 128 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~ 206 (584)
|+... .| ++.|.++. ..-.+|.+|+|+|+. |+..++||-+ ++.+.-|.++.+.-...+
T Consensus 1852 f~tn~--ei---gk~vs~d~-----------l~~~~daiv~a~gst~prdlpv~grd-----~kgv~fame~l~~ntk~l 1910 (2142)
T KOG0399|consen 1852 FVTNT--EI---GKHVSLDE-----------LKKENDAIVLATGSTTPRDLPVPGRD-----LKGVHFAMEFLEKNTKSL 1910 (2142)
T ss_pred EEeec--cc---cccccHHH-----------HhhccCeEEEEeCCCCCcCCCCCCcc-----ccccHHHHHHHHHhHHhh
Confidence 53221 11 12233221 245699999999996 8888999964 233334444433322221
Q ss_pred HHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhh--hCcCCCCCcEEEEecCC-ccccccccHHH-HHH
Q 045826 207 ERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSK--LYPSLKEFTRITLLEAG-DHILNMFDKRI-TAS 282 (584)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~--~~~~~~~~~~V~lv~~~-~~il~~~~~~~-~~~ 282 (584)
-...+. ......++|+|+|||||.+|.+|.+.-.+.+...+.. ..|... .+|. +.+.|.++.-+ .++
T Consensus 1911 ld~~~d--~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp-------~~ra~~npwpqwprvfrvdy 1981 (2142)
T KOG0399|consen 1911 LDSVLD--GNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPP-------PERAPDNPWPQWPRVFRVDY 1981 (2142)
T ss_pred hccccc--cceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCC-------cccCCCCCCccCceEEEeec
Confidence 111110 0112347899999999999999999988877532211 111100 0000 11122211100 000
Q ss_pred HHHHHH-hCCcEEEe------------CCceeEEc-------C--Ce-EEEEeCCCCeEEEEecceEEEccCCCCCchHH
Q 045826 283 AEEKFK-RDGIDLKT------------GSMVVKLS-------D--KE-ISTKDRATGQISSIPYGMVVWSTGIGTRPVIM 339 (584)
Q Consensus 283 ~~~~L~-~~GV~v~~------------~~~V~~v~-------~--~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~ 339 (584)
-++..+ ..|-+.++ +..|+.++ . .+ -.+.. ..+.++.|+||+||+|.|+..+..
T Consensus 1982 gh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~e-i~~see~~eadlv~lamgf~gpe~-- 2058 (2142)
T KOG0399|consen 1982 GHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKE-INNSEEIIEADLVILAMGFVGPEK-- 2058 (2142)
T ss_pred chHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEE-cCCcceeeecceeeeeccccCcch--
Confidence 011111 11111111 11222221 1 11 12221 224444699999999999765542
Q ss_pred HHHHHhCC--cCCCceeeC-CCCccCCCCCEEEeCcccc
Q 045826 340 DFMKQIGQ--ANRRVLATD-EWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 340 ~l~~~~~l--~~~g~i~Vd-~~l~~~~~~~VfaiGD~a~ 375 (584)
...+++++ +.++.|..- +.+.+ +.+.|||+|||-.
T Consensus 2059 ~~~~~~~~~~d~rsni~t~~~~y~t-~v~~vfaagdcrr 2096 (2142)
T KOG0399|consen 2059 SVIEQLNLKTDPRSNILTPKDSYST-DVAKVFAAGDCRR 2096 (2142)
T ss_pred hhhhhcCcccCccccccCCCccccc-cccceeecccccC
Confidence 34666776 567777653 45666 7999999999975
No 84
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.73 E-value=3.8e-18 Score=160.80 Aligned_cols=263 Identities=17% Similarity=0.224 Sum_probs=162.9
Q ss_pred eEEEECCcHHHHHHHHhcc--cCCCeEEEEcCCCCCCCCCcccccc----ccccCcccccHHHHHHHHHcCCcEEEEEEE
Q 045826 59 KVVVLGTGWAGTTFLKILK--SNSFEVQVVSPRNYFAFTPLLPSVT----NGTVEARSIVEPIRNIVRKKGMDIQFKEAE 132 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~--~~g~~V~lid~~~~~~~~p~~~~~~----~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~ 132 (584)
+.+|||||+||.+||..|+ ++..+|.||..++..--...+..+. ...+...++ ..+..... +|++.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~----~elg~~f~---~~~~~- 72 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNC----HELGPDFR---RFLND- 72 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccch----hhhcccHH---HHHHh-
Confidence 3689999999999999998 6778999999875322111111000 000000010 11111110 13344
Q ss_pred EEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCC
Q 045826 133 CYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLP 212 (584)
Q Consensus 133 v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 212 (584)
|..++.....+++.++. .+.|++|++++|++|... .+|....+..+++.+.+..++.++.
T Consensus 73 v~~~~s~ehci~t~~g~----------~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl~--------- 132 (334)
T KOG2755|consen 73 VVTWDSSEHCIHTQNGE----------KLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKLV--------- 132 (334)
T ss_pred hhhhccccceEEecCCc----------eeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHHh---------
Confidence 67778888899988875 899999999999999754 4555667788888888888877763
Q ss_pred CCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccc-ccHHHHHHHHHHHHhC-
Q 045826 213 NLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM-FDKRITASAEEKFKRD- 290 (584)
Q Consensus 213 ~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-~~~~~~~~~~~~L~~~- 290 (584)
+.|.|.|+|.|-+++|++.++.. ++|++....+.+-.. |+|.+.+.+...|...
T Consensus 133 --------kaK~VlilgnGgia~El~yElk~----------------~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~ 188 (334)
T KOG2755|consen 133 --------KAKIVLILGNGGIAMELTYELKI----------------LNVTWKIKDEGISATFFDPGAAEFYDINLRADR 188 (334)
T ss_pred --------hcceEEEEecCchhHHHHHHhhc----------------ceeEEEecchhhhhcccCccHHHHhHhhhhccc
Confidence 55799999999999999999865 566666665555443 3454444444333110
Q ss_pred -----------CcEEEeCC-----------------------------------ceeEE-cC---CeEEEEeCCCCeEEE
Q 045826 291 -----------GIDLKTGS-----------------------------------MVVKL-SD---KEISTKDRATGQISS 320 (584)
Q Consensus 291 -----------GV~v~~~~-----------------------------------~V~~v-~~---~~v~~~~~~~G~~~~ 320 (584)
.++...+. ++..+ ++ ..++..+...|.--.
T Consensus 189 s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~q 268 (334)
T KOG2755|consen 189 STRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQ 268 (334)
T ss_pred ccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccce
Confidence 01000000 00000 00 001111111121113
Q ss_pred EecceEEEccCCCCCchHHHH-HHHhCCcCCCceeeCCCCccCCCCCEEEeCccccc
Q 045826 321 IPYGMVVWSTGIGTRPVIMDF-MKQIGQANRRVLATDEWLRVEGCESVYALGDCATI 376 (584)
Q Consensus 321 i~~D~vI~a~G~~~~p~~~~l-~~~~~l~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 376 (584)
+.||.+|||+|+. |+...+ ...+.+.++|.+.||+.|++ +.|+|||+||++..
T Consensus 269 lt~d~ivSatgvt--pn~e~~~~~~lq~~edggikvdd~m~t-slpdvFa~gDvctt 322 (334)
T KOG2755|consen 269 LTCDFIVSATGVT--PNSEWAMNKMLQITEDGGIKVDDAMET-SLPDVFAAGDVCTT 322 (334)
T ss_pred eeeeEEEeccccC--cCceEEecChhhhccccCeeehhhccc-cccceeeecceecc
Confidence 7799999999964 444422 22334467889999999999 99999999999974
No 85
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.62 E-value=5.8e-15 Score=152.49 Aligned_cols=238 Identities=15% Similarity=0.243 Sum_probs=129.2
Q ss_pred CCeEEEECCcHHHHHHHHhcccC-CCeEEEEcCCCCCCCCCcc--cccc------ccc---cCc----------------
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSN-SFEVQVVSPRNYFAFTPLL--PSVT------NGT---VEA---------------- 108 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~-g~~V~lid~~~~~~~~p~~--~~~~------~g~---~~~---------------- 108 (584)
.+|+++||.||++|++|..|.+. ..++..+|+++.+.|.|.+ +... ... .+|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 46899999999999999999854 4899999999999988632 2210 000 000
Q ss_pred -------------ccccHHHHHHHHHcCCcEEEEEEEEEEEecCCC------EEEEeecCccCCCCCceEEEeCCEEEEc
Q 045826 109 -------------RSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKK------QIYCRTTEDRTCGGKEEFALDYDILVIA 169 (584)
Q Consensus 109 -------------~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~------~v~~~~~~~~~~~~~~~~~i~yD~LVlA 169 (584)
.+..++++...++....++| ..+|+.|++... .|.+.+.. +....+.++.||||
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~-~~~V~~I~~~~~~~~~~~~V~~~~~~------g~~~~~~ar~vVla 154 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRY-GSEVTSIEPDDDGDEDLFRVTTRDSD------GDGETYRARNVVLA 154 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEE-SEEEEEEEEEEETTEEEEEEEEEETT------S-EEEEEESEEEE-
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEE-CCEEEEEEEecCCCccEEEEEEeecC------CCeeEEEeCeEEEC
Confidence 11222234444445534654 778999987664 34443221 11348999999999
Q ss_pred cCCCCCCCCC-CCcc--cccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHH
Q 045826 170 MGAQANTFNT-PGVV--EHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVI 246 (584)
Q Consensus 170 tGs~~~~~~i-pG~~--~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~ 246 (584)
+|..|..|.. ..+. +.++....... +.. .....++|+|||||.++.|++..|.+..
T Consensus 155 ~G~~P~iP~~~~~~~~~~~v~Hss~~~~------~~~--------------~~~~~~~V~VVGgGQSAAEi~~~L~~~~- 213 (341)
T PF13434_consen 155 TGGQPRIPEWFQDLPGSPRVFHSSEYLS------RID--------------QSLAGKRVAVVGGGQSAAEIFLDLLRRG- 213 (341)
T ss_dssp ---EE---GGGGGGTT-TTEEEGGGHHH------HHT-------------------EEEEEE-SSHHHHHHHHHHHHH--
T ss_pred cCCCCCCCcchhhcCCCCCEEEehHhhh------ccc--------------cccCCCeEEEECCcHhHHHHHHHHHhCC-
Confidence 9988876632 2221 23333222211 110 0245669999999999999999998865
Q ss_pred HhHhhhCcCCCCCcEEEEecCCcccccc---------ccHHHHHH-------------------------------HHHH
Q 045826 247 DDLSKLYPSLKEFTRITLLEAGDHILNM---------FDKRITAS-------------------------------AEEK 286 (584)
Q Consensus 247 ~~~~~~~~~~~~~~~V~lv~~~~~il~~---------~~~~~~~~-------------------------------~~~~ 286 (584)
+..+|+++.|++.+.|. |+|+..++ +.+.
T Consensus 214 -----------~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~ 282 (341)
T PF13434_consen 214 -----------PEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDR 282 (341)
T ss_dssp -----------TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHH
T ss_pred -----------CCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHH
Confidence 23799999998876541 33433221 1111
Q ss_pred H------HhCCcEEEeCCceeEEc--CC-e--EEEEeCCCCeEEEEecceEEEccCCC
Q 045826 287 F------KRDGIDLKTGSMVVKLS--DK-E--ISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 287 L------~~~GV~v~~~~~V~~v~--~~-~--v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
+ .+..+.++.+++|+.++ ++ + +.+.+..+|+..++++|.||+|||++
T Consensus 283 lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 283 LYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp HHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred HHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 1 23357899999999984 32 4 45555556777789999999999964
No 86
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.62 E-value=4.2e-16 Score=149.81 Aligned_cols=165 Identities=21% Similarity=0.249 Sum_probs=99.9
Q ss_pred EEECCcHHHHHHHHhcccCCCe-EEEEcCCCCCCCCCcc---------ccc---c--------------------ccccC
Q 045826 61 VVLGTGWAGTTFLKILKSNSFE-VQVVSPRNYFAFTPLL---------PSV---T--------------------NGTVE 107 (584)
Q Consensus 61 VIVGgG~AGl~aA~~L~~~g~~-V~lid~~~~~~~~p~~---------~~~---~--------------------~g~~~ 107 (584)
+|||||++||++|.+|.+.|.+ |+|||+++..+..... +.. . .....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999999 9999998665442110 000 0 00111
Q ss_pred cccccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCC--CCCCCCCCC-ccc
Q 045826 108 ARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGA--QANTFNTPG-VVE 184 (584)
Q Consensus 108 ~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs--~~~~~~ipG-~~~ 184 (584)
.+++...++.+.++++++++ .+.+|+++..++....+....+ .++.+|+||+|||. .|+.|.+|| ...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~-~~~~V~~v~~~~~~w~v~~~~~--------~~~~a~~VVlAtG~~~~p~~p~~~g~~~~ 151 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIR-FNTRVESVRRDGDGWTVTTRDG--------RTIRADRVVLATGHYSHPRIPDIPGSAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEE-TS--EEEEEEETTTEEEEETTS---------EEEEEEEEE---SSCSB---S-TTGGCS
T ss_pred HHHHHHHHHHHHhhcCcccc-cCCEEEEEEEeccEEEEEEEec--------ceeeeeeEEEeeeccCCCCcccccccccc
Confidence 23455667888888887753 4788999988776444443321 28889999999996 688888988 322
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEE
Q 045826 185 HAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITL 264 (584)
Q Consensus 185 ~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~l 264 (584)
..+..... ......++++|+|||+|.+|+|+|..|++.+ .+|++
T Consensus 152 ~~~h~~~~----------------------~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g--------------~~V~~ 195 (203)
T PF13738_consen 152 PIIHSADW----------------------RDPEDFKGKRVVVVGGGNSAVDIAYALAKAG--------------KSVTL 195 (203)
T ss_dssp EEEEGGG-----------------------STTGGCTTSEEEEE--SHHHHHHHHHHTTTC--------------SEEEE
T ss_pred ceEehhhc----------------------CChhhcCCCcEEEEcChHHHHHHHHHHHhhC--------------CEEEE
Confidence 22221111 0112245689999999999999999998754 79999
Q ss_pred ecCCcc
Q 045826 265 LEAGDH 270 (584)
Q Consensus 265 v~~~~~ 270 (584)
+.|.+.
T Consensus 196 ~~R~~~ 201 (203)
T PF13738_consen 196 VTRSPI 201 (203)
T ss_dssp EESS--
T ss_pred EecCCC
Confidence 999874
No 87
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.58 E-value=3.3e-14 Score=152.21 Aligned_cols=177 Identities=18% Similarity=0.204 Sum_probs=116.8
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcccCCCe-EEEEcCCCCCCCCCccc--------------cc---cc---cccCcc-cc
Q 045826 54 EFKKKKVVVLGTGWAGTTFLKILKSNSFE-VQVVSPRNYFAFTPLLP--------------SV---TN---GTVEAR-SI 111 (584)
Q Consensus 54 ~~~~~~VVIVGgG~AGl~aA~~L~~~g~~-V~lid~~~~~~~~p~~~--------------~~---~~---g~~~~~-~i 111 (584)
..+..+|+|||||++||++|++|.+.|.+ ++|+|++...++.+... .+ +. ...... .+
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~ 84 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEI 84 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccH
Confidence 34578999999999999999999999988 99999997666443211 01 11 111111 24
Q ss_pred cHHHHHHHHHcCCcEEE-EEEEEEEEecCC--CE--EEEeecCccCCCCCceEEEeCCEEEEccCC--CCCCCCCCCccc
Q 045826 112 VEPIRNIVRKKGMDIQF-KEAECYKIDAEK--KQ--IYCRTTEDRTCGGKEEFALDYDILVIAMGA--QANTFNTPGVVE 184 (584)
Q Consensus 112 ~~~~~~~~~~~g~~v~~-~~~~v~~id~~~--~~--v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs--~~~~~~ipG~~~ 184 (584)
...+.+++++++....+ ++..|..++.+. +. |+++++. . .++.+|+||+|||. .|+.|.++|.++
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~-------~-~~~~a~~vV~ATG~~~~P~iP~~~G~~~ 156 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGG-------T-GELTADFVVVATGHLSEPYIPDFAGLDE 156 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCC-------e-eeEecCEEEEeecCCCCCCCCCCCCccC
Confidence 55567777777753222 123333344433 33 3333322 1 12779999999997 588889999875
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEE
Q 045826 185 HAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITL 264 (584)
Q Consensus 185 ~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~l 264 (584)
+....-+- .. .+.....++|+|+|||+|++|++++.+|.+.+ .+|++
T Consensus 157 f~g~~~HS----------------~~---~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~g--------------a~vt~ 203 (443)
T COG2072 157 FKGRILHS----------------AD---WPNPEDLRGKRVLVIGAGASAVDIAPELAEVG--------------ASVTL 203 (443)
T ss_pred CCceEEch----------------hc---CCCccccCCCeEEEECCCccHHHHHHHHHhcC--------------CeeEE
Confidence 42211111 11 22334578999999999999999999999865 68999
Q ss_pred ecCCccc
Q 045826 265 LEAGDHI 271 (584)
Q Consensus 265 v~~~~~i 271 (584)
+.|.+..
T Consensus 204 ~qRs~~~ 210 (443)
T COG2072 204 SQRSPPH 210 (443)
T ss_pred EecCCCc
Confidence 8888754
No 88
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=1.6e-14 Score=152.47 Aligned_cols=225 Identities=16% Similarity=0.209 Sum_probs=139.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccc--------c------------------ccc-----
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLP--------S------------------VTN----- 103 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~--------~------------------~~~----- 103 (584)
+..++|+|||||+|||.+|+.|.+.|++++++||.+.+++.+... . .+.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 346899999999999999999999999999999998877643322 1 000
Q ss_pred -cccCcccccHHHHHHHHHcCC--cEEEEEEEEEEEecCC-C--EEEEeecCccCCCCCceEEEeCCEEEEccCCC--CC
Q 045826 104 -GTVEARSIVEPIRNIVRKKGM--DIQFKEAECYKIDAEK-K--QIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ--AN 175 (584)
Q Consensus 104 -g~~~~~~i~~~~~~~~~~~g~--~v~~~~~~v~~id~~~-~--~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~--~~ 175 (584)
...+..++..+++++.+.+++ .++| +.+|..++... + .|.+.+..+ . ..+.-||.||+|+|.. |+
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~gkW~V~~~~~~~-----~-~~~~ifd~VvVctGh~~~P~ 156 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKGKWRVTTKDNGT-----Q-IEEEIFDAVVVCTGHYVEPR 156 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCCceeEEEecCCc-----c-eeEEEeeEEEEcccCcCCCC
Confidence 001122466667777777774 2433 56667777665 2 444444321 1 2377899999999997 78
Q ss_pred CCCCCCcc--cccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhC
Q 045826 176 TFNTPGVV--EHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLY 253 (584)
Q Consensus 176 ~~~ipG~~--~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~ 253 (584)
.|.+||.. ..-- ..-++...+ ..+...+|+|+|||+|++|+|++.+++...
T Consensus 157 ~P~~~g~~~~~f~G---~~iHS~~Yk----------------~~e~f~~k~VlVIG~g~SG~DIs~d~~~~a-------- 209 (448)
T KOG1399|consen 157 IPQIPGPGIESFKG---KIIHSHDYK----------------SPEKFRDKVVLVVGCGNSGMDISLDLLRVA-------- 209 (448)
T ss_pred CCcCCCCchhhcCC---cceehhhcc----------------CcccccCceEEEECCCccHHHHHHHHHHhc--------
Confidence 88887742 1100 011111111 112356789999999999999999988765
Q ss_pred cCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 254 PSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 254 ~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
..|++..+ .-.+.... ....-.++-.+.. |..+++++..+.+ ++.. ..+|.+|+|||+.
T Consensus 210 ------k~v~~~~~-~~~~~~~~--------~~~~~~~~~~~~~--i~~~~e~~~~~~~--~~~~--~~~D~ii~ctgy~ 268 (448)
T KOG1399|consen 210 ------KEVHLSVV-SPKVHVEP--------PEILGENLWQVPS--IKSFTEDGSVFEK--GGPV--ERVDRIIFCTGYK 268 (448)
T ss_pred ------cCcceeee-cccccccc--------cceeecceEEccc--cccccCcceEEEc--Ccee--EEeeeEEEeeeeE
Confidence 34554432 10000000 0001123333333 7778888877765 2543 7899999999964
Q ss_pred C
Q 045826 334 T 334 (584)
Q Consensus 334 ~ 334 (584)
-
T Consensus 269 y 269 (448)
T KOG1399|consen 269 Y 269 (448)
T ss_pred e
Confidence 3
No 89
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.57 E-value=4.3e-14 Score=149.13 Aligned_cols=299 Identities=12% Similarity=0.125 Sum_probs=157.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcc-cCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILK-SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~-~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
.+++|+||||||||++||.+|. +.|++|+|+|+.+..++ .+.+.+++.....+.+...+...+...+ ++|. +.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG-LvR~GVaPdh~~~k~v~~~f~~~~~~~~--v~f~-gnv~ 113 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG-LIRYGVAPDHIHVKNTYKTFDPVFLSPN--YRFF-GNVH 113 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc-EEEEeCCCCCccHHHHHHHHHHHHhhCC--eEEE-eeeE
Confidence 4679999999999999999765 67999999999997765 3445666655544566666666665554 5554 2111
Q ss_pred EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCC----------CcccccccccCHHHHHHHHHHHHH
Q 045826 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTP----------GVVEHAHFLKEVEHAQRIRRSVID 204 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ip----------G~~~~~~~~~~~~~a~~~~~~l~~ 204 (584)
+. ..+.++. ....||.||+|+|+.+..++++ |.+.. -.+...-++..+..++..
T Consensus 114 -VG---~Dvt~ee-----------L~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~-~~l~Gvf~A~dfV~WYNg 177 (506)
T PTZ00188 114 -VG---VDLKMEE-----------LRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNP-RKQNGIFHARDLIYFYNN 177 (506)
T ss_pred -ec---CccCHHH-----------HHhcCCEEEEEcCCCCCCCCcccccceeeeccccccc-cccCcEEehheEEEeecC
Confidence 11 1111111 1347999999999985433311 22100 000001111111111111
Q ss_pred HHHHh---cC-CCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhh-----hCc-CCC--CCcEEEEecCCccc-
Q 045826 205 CFERA---SL-PNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSK-----LYP-SLK--EFTRITLLEAGDHI- 271 (584)
Q Consensus 205 ~~~~~---~~-~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~-----~~~-~~~--~~~~V~lv~~~~~i- 271 (584)
..+.. .. ..+.+- ....+++|||.|++++++|..|..-. +.+.. ..- .++ .-.+|+++-|..-.
T Consensus 178 ~p~~~~~~~~~ayL~p~--~~~~~vvVIG~GNVAlDvARiL~~~~-d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~q 254 (506)
T PTZ00188 178 MYNDVRCKAVDNYLNSF--ENFTTSIIIGNGNVSLDIARILIKSP-DDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQ 254 (506)
T ss_pred CCCcccccccccccccc--CCCCcEEEECCCchHHHHHHHHccCH-HHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHH
Confidence 00000 00 000000 03358999999999999999875432 11111 000 000 11245555333210
Q ss_pred -------------cc------------------c---ccHH-------HHHHHHHHHH----------hCCcEEEeCCce
Q 045826 272 -------------LN------------------M---FDKR-------ITASAEEKFK----------RDGIDLKTGSMV 300 (584)
Q Consensus 272 -------------l~------------------~---~~~~-------~~~~~~~~L~----------~~GV~v~~~~~V 300 (584)
++ . .+.. ..+.+.+... .+-+.+++....
T Consensus 255 aaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP 334 (506)
T PTZ00188 255 SSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEI 334 (506)
T ss_pred hCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCc
Confidence 00 0 0000 1112222221 134667777777
Q ss_pred eEEcC-C----eEEEEe--------CCCCeEEEEecceEEEccCCCCCchHHHHHHHhCCcCCCceeeCCCCcc-CCCCC
Q 045826 301 VKLSD-K----EISTKD--------RATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEWLRV-EGCES 366 (584)
Q Consensus 301 ~~v~~-~----~v~~~~--------~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~~~g~i~Vd~~l~~-~~~~~ 366 (584)
++|.+ + ++.+.. ..+|+..+++||+|+-++|++..|.. . ++.+ +. +.+.. -++ ...|+
T Consensus 335 ~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~-g----~pFd-~~-~~n~~-grv~~~~~g 406 (506)
T PTZ00188 335 RQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFA-E----NLYN-QS-VQMFK-EDIGQHKFA 406 (506)
T ss_pred eEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCCC-C----CCcc-cc-CCCCC-CcccCCCCC
Confidence 77752 2 244432 12577678999999999999988754 2 2233 11 22221 111 13699
Q ss_pred EEEeCccccccccchhhhH
Q 045826 367 VYALGDCATINQRKVMEDI 385 (584)
Q Consensus 367 VfaiGD~a~~~~~~~~~~~ 385 (584)
+|+.|-+...|.+-+.+..
T Consensus 407 ~Y~~GWiKrGP~GvIgtn~ 425 (506)
T PTZ00188 407 IFKAGWFDKGPKGNIASQI 425 (506)
T ss_pred cEEeeecCcCCCceeccCc
Confidence 9999999998876655543
No 90
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.57 E-value=1.4e-14 Score=143.78 Aligned_cols=305 Identities=17% Similarity=0.203 Sum_probs=178.2
Q ss_pred CCCeEEEECCcHHHHHHHHhccc--CCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEE-E
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKS--NSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEA-E 132 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~--~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~-~ 132 (584)
..++|.|||+||||+.+|..|.+ .+++|+|+|+.+. .|....+.+++...+...+...+...++... +.|+.. +
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv-PFGLvRyGVAPDHpEvKnvintFt~~aE~~r--fsf~gNv~ 95 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV-PFGLVRYGVAPDHPEVKNVINTFTKTAEHER--FSFFGNVK 95 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc-ccceeeeccCCCCcchhhHHHHHHHHhhccc--eEEEecce
Confidence 45699999999999999999874 5799999999985 3435567888887777777777888777654 544321 1
Q ss_pred EEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCC-CCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcC
Q 045826 133 CYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQ-ANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASL 211 (584)
Q Consensus 133 v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~-~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~ 211 (584)
| ++.+.+.. -+-.||.+|||.|+. ++..+|||-+ ...+.+...+....+.+-+ ...
T Consensus 96 v------G~dvsl~e-----------L~~~ydavvLaYGa~~dR~L~IPGe~--l~~V~Sarefv~Wyng~P~---~~~- 152 (468)
T KOG1800|consen 96 V------GRDVSLKE-----------LTDNYDAVVLAYGADGDRRLDIPGEE--LSGVISAREFVGWYNGLPE---NQN- 152 (468)
T ss_pred e------cccccHHH-----------HhhcccEEEEEecCCCCcccCCCCcc--cccceehhhhhhhccCCCc---ccc-
Confidence 1 11222221 256799999999996 7888999954 2223333333332221111 100
Q ss_pred CCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHhH-hhhCcC-----C--CCCcEEEEecCCccccccc--------
Q 045826 212 PNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDL-SKLYPS-----L--KEFTRITLLEAGDHILNMF-------- 275 (584)
Q Consensus 212 ~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~-~~~~~~-----~--~~~~~V~lv~~~~~il~~~-------- 275 (584)
.+.+....+|+|||-|++++++|..|...-.... ..+.|. + .+-.+|+|+-|..-+-..|
T Consensus 153 ----le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~ 228 (468)
T KOG1800|consen 153 ----LEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREV 228 (468)
T ss_pred ----cCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHH
Confidence 0112346799999999999999999865432222 122221 1 1235677776553211000
Q ss_pred ------------------------------cHHHHHHHHHHHHhC---------CcE---EEeCCceeEEcCC-----eE
Q 045826 276 ------------------------------DKRITASAEEKFKRD---------GID---LKTGSMVVKLSDK-----EI 308 (584)
Q Consensus 276 ------------------------------~~~~~~~~~~~L~~~---------GV~---v~~~~~V~~v~~~-----~v 308 (584)
.+++.+.+.+.+.++ +.+ +.......+|.++ ++
T Consensus 229 ~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~ 308 (468)
T KOG1800|consen 229 LELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGV 308 (468)
T ss_pred hCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccce
Confidence 012222222222221 000 0000011111111 11
Q ss_pred EEE--------eCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCCcCCCceeeCCCCccC---CCCCEEEeCcccccc
Q 045826 309 STK--------DRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQANRRVLATDEWLRVE---GCESVYALGDCATIN 377 (584)
Q Consensus 309 ~~~--------~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~~~g~i~Vd~~l~~~---~~~~VfaiGD~a~~~ 377 (584)
.+. ...+|...+++|++++.++|++..|... .++.+.+..+.-+...++. -.|++|+.|=|...|
T Consensus 309 ~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~----gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP 384 (468)
T KOG1800|consen 309 RFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDS----GIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGP 384 (468)
T ss_pred EEEeeeehhhcccccCceEeeccceeEeeeeecccccCC----CCCcccccCcccCCCceEEeeccCCceEEEeeeccCC
Confidence 111 1234666679999999999998887543 3344433333333333331 259999999999999
Q ss_pred ccchhhhHHHHhhhccc
Q 045826 378 QRKVMEDISAIFSKADK 394 (584)
Q Consensus 378 ~~~~~~~~~~~~~~a~~ 394 (584)
.+-+++...+.+..++.
T Consensus 385 ~GvIattm~dAf~v~d~ 401 (468)
T KOG1800|consen 385 TGVIATTMQDAFEVADT 401 (468)
T ss_pred cceeeehhhhHHHHHHH
Confidence 88888888877777654
No 91
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.54 E-value=1.3e-12 Score=133.47 Aligned_cols=308 Identities=18% Similarity=0.190 Sum_probs=174.4
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCc-ccccHH-HHHHHHHcCCcEEEEEE
Q 045826 54 EFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEA-RSIVEP-IRNIVRKKGMDIQFKEA 131 (584)
Q Consensus 54 ~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~-~~i~~~-~~~~~~~~g~~v~~~~~ 131 (584)
....++++|||||+|||+||..|+..|++|+|+|+++..+++.........+.+. --+..| +.+.-...+++. +..+
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l-~Tya 199 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIEL-ITYA 199 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceee-eeee
Confidence 3456799999999999999999999999999999999999874322221111111 112222 222222222221 2355
Q ss_pred EEEEEecCCCEEEEe--ecC----------c-------------------------------------------------
Q 045826 132 ECYKIDAEKKQIYCR--TTE----------D------------------------------------------------- 150 (584)
Q Consensus 132 ~v~~id~~~~~v~~~--~~~----------~------------------------------------------------- 150 (584)
+|++|+-.-..+++. ... +
T Consensus 200 eV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C 279 (622)
T COG1148 200 EVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLC 279 (622)
T ss_pred eeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhh
Confidence 566554322211111 000 0
Q ss_pred --------cC-CCCCceEEEeCCEEEEccCCCCCCCCCCCcccccc-cccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHh
Q 045826 151 --------RT-CGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAH-FLKEVEHAQRIRRSVIDCFERASLPNLSDEERK 220 (584)
Q Consensus 151 --------~~-~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~-~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 220 (584)
.+ ..+.++.+++...+|+|||-.+....-. .++.+ .+.++-..+++.+.+..+--. .=.-+-+.+..
T Consensus 280 ~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k--~EyGYG~~~nVIT~lElErml~~~GPT-~GkvlrpSdg~ 356 (622)
T COG1148 280 EKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRK--EEYGYGKYPNVITNLELERMLNPNGPT-GGKVLRPSDGK 356 (622)
T ss_pred hhcCCccccccCCCCcEEEEEeceEEEEccccccCcchh--hhcCCCCCcchhhHHHHHHHhccCCCC-CceEEecCCCC
Confidence 00 0122345788999999999887655322 13322 223344444433322111000 00001122234
Q ss_pred ccceEEEE---CCC-----hh---HHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHh
Q 045826 221 KILHFVVV---GGG-----PT---GVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKR 289 (584)
Q Consensus 221 ~~~~vvVV---GgG-----~~---gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~ 289 (584)
..++|+.| |+- +. -+=+...|.. ...+++.||+ .+|++++..-+-.. ...-++..+.-++
T Consensus 357 ~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKq--A~~Ike~~Pd----~~v~I~YmDiRafG---~~yEefY~~~Q~~ 427 (622)
T COG1148 357 PPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQ--AQLIKERYPD----TDVTIYYMDIRAFG---KDYEEFYVRSQED 427 (622)
T ss_pred CCceEEEEEEecCcCcccCChhhHHHHHHHHHhh--hhhhhhcCCC----cceeEEEEEeeccC---ccHHHHHHhhhhh
Confidence 56688775 542 22 1222222222 2345667775 67887776554433 3333444444457
Q ss_pred CCcEEEeCCceeEE---cCCe--EEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC--cCCCceeeC-CCCcc
Q 045826 290 DGIDLKTGSMVVKL---SDKE--ISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ--ANRRVLATD-EWLRV 361 (584)
Q Consensus 290 ~GV~v~~~~~V~~v---~~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l--~~~g~i~Vd-~~l~~ 361 (584)
.||+++.+. +.+| .++. |...++-.|+..++++|+||+++|+.+.+-.+.+..-++| +..|++... +.|+.
T Consensus 428 ~gV~fIRGr-vaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~p 506 (622)
T COG1148 428 YGVRFIRGR-VAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRP 506 (622)
T ss_pred hchhhhcCC-hHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCccc
Confidence 899998874 4444 3343 4555666788778999999999999888888888777887 677887765 55543
Q ss_pred C--CCCCEEEeCcccc
Q 045826 362 E--GCESVYALGDCAT 375 (584)
Q Consensus 362 ~--~~~~VfaiGD~a~ 375 (584)
. ..++||.+|=|..
T Consensus 507 v~s~~~GIflAG~aqg 522 (622)
T COG1148 507 VDSNRDGIFLAGAAQG 522 (622)
T ss_pred ccccCCcEEEeecccC
Confidence 2 4679999998865
No 92
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.53 E-value=7.4e-13 Score=133.58 Aligned_cols=282 Identities=13% Similarity=0.171 Sum_probs=171.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccC-CCeEEEEcCCCCCCCCCc--cccc------cccc---cCcc-------------
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSN-SFEVQVVSPRNYFAFTPL--LPSV------TNGT---VEAR------------- 109 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~-g~~V~lid~~~~~~~~p~--~~~~------~~g~---~~~~------------- 109 (584)
+...|++.||-||+-|+.|..|.+. +.++..+|+.+.|.|.|. +++. .... .+|.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 4568999999999999999999854 488999999999999873 2221 0011 1111
Q ss_pred ----------------cccHHHHHHHHHcCCcEEEEEEEEE---EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEcc
Q 045826 110 ----------------SIVEPIRNIVRKKGMDIQFKEAECY---KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAM 170 (584)
Q Consensus 110 ----------------~i~~~~~~~~~~~g~~v~~~~~~v~---~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAt 170 (584)
+..++.+...... -.++| ..+|+ .+|.+.......... + ...+.+..|||++
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rf-g~~V~~i~~~~~d~~~~~~~~t~-----~--~~~y~ar~lVlg~ 153 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRF-GEEVTDISSLDGDAVVRLFVVTA-----N--GTVYRARNLVLGV 153 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhC-Ccccc-CCeeccccccCCcceeEEEEEcC-----C--CcEEEeeeEEEcc
Confidence 1111112222222 13433 55677 455444433111111 1 1289999999999
Q ss_pred CCCCCCCC-CCCcc-cccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHHHHHHHHh
Q 045826 171 GAQANTFN-TPGVV-EHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAALHDFVIDD 248 (584)
Q Consensus 171 Gs~~~~~~-ipG~~-~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~ 248 (584)
|.+|..|+ +..+. +.++. ..++..+..+ .....+|.|||||.+|.|+-..|..-.
T Consensus 154 G~~P~IP~~f~~l~~~~vfH------ss~~~~~~~~--------------~~~~~~V~ViG~GQSAAEi~~~Ll~~~--- 210 (436)
T COG3486 154 GTQPYIPPCFRSLIGERVFH------SSEYLERHPE--------------LLQKRSVTVIGSGQSAAEIFLDLLNSQ--- 210 (436)
T ss_pred CCCcCCChHHhCcCccceee------hHHHHHhhHH--------------hhcCceEEEEcCCccHHHHHHHHHhCC---
Confidence 99998774 22222 22221 1222211111 122235999999999999988876532
Q ss_pred HhhhCcCCCCCcEEEEecCCcccccc---------ccHHHHHHH------------------------------HHHH--
Q 045826 249 LSKLYPSLKEFTRITLLEAGDHILNM---------FDKRITASA------------------------------EEKF-- 287 (584)
Q Consensus 249 ~~~~~~~~~~~~~V~lv~~~~~il~~---------~~~~~~~~~------------------------------~~~L-- 287 (584)
+. ...++.++.|+..++|. |.|+..++. .+.|
T Consensus 211 -----~~--~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~ 283 (436)
T COG3486 211 -----PP--QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYE 283 (436)
T ss_pred -----CC--cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHH
Confidence 11 23468889888887663 233332221 1111
Q ss_pred -----HhCCcEEEeCCceeEEcCCe---E--EEEeCCCCeEEEEecceEEEccCCC-CCc-hHHHHHHHhCCcCCCceee
Q 045826 288 -----KRDGIDLKTGSMVVKLSDKE---I--STKDRATGQISSIPYGMVVWSTGIG-TRP-VIMDFMKQIGQANRRVLAT 355 (584)
Q Consensus 288 -----~~~GV~v~~~~~V~~v~~~~---v--~~~~~~~G~~~~i~~D~vI~a~G~~-~~p-~~~~l~~~~~l~~~g~i~V 355 (584)
.+..|.++.+++|..+++.+ + .+....+|+..++++|.||+|||+. ..| ++..+.+.+..+++|...|
T Consensus 284 ~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I 363 (436)
T COG3486 284 QSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVI 363 (436)
T ss_pred HHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEe
Confidence 13468999999999997644 3 3444445776779999999999986 334 3433333444478899999
Q ss_pred CCCCccCCC----CCEEEeCcccc
Q 045826 356 DEWLRVEGC----ESVYALGDCAT 375 (584)
Q Consensus 356 d~~l~~~~~----~~VfaiGD~a~ 375 (584)
+.++++... ..||+.|=+..
T Consensus 364 ~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 364 GRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred cCceeeecCCCCcceEEEeccccc
Confidence 988776332 26999887765
No 93
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.40 E-value=4e-12 Score=134.46 Aligned_cols=140 Identities=17% Similarity=0.075 Sum_probs=95.8
Q ss_pred EEECCChhHHHHH-HHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc
Q 045826 226 VVVGGGPTGVEFA-AALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS 304 (584)
Q Consensus 226 vVVGgG~~gvE~A-~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~ 304 (584)
.|++.|..|+|.+ ..++++... -+++|+++...+..++.. ++.+.+.+.+++.|++++++++|++++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~----------LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~ 286 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEA----------LGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAE 286 (422)
T ss_pred EEEECceecCCChHHHHHHHHHH----------HCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 7789999999999 555543211 158999999999988874 788899999999999999999999985
Q ss_pred --CCeEEEEeCCCCeEEEEecceEEEccCCCCCchHH----HHHHH---hCC---------------c----CCCceeeC
Q 045826 305 --DKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIM----DFMKQ---IGQ---------------A----NRRVLATD 356 (584)
Q Consensus 305 --~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~----~l~~~---~~l---------------~----~~g~i~Vd 356 (584)
++++......+|+...+.+|.||+|+|.....-+. .+.+. +++ . .+-++.||
T Consensus 287 ~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d 366 (422)
T PRK05329 287 FEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATD 366 (422)
T ss_pred EeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceEC
Confidence 34444332233554469999999999953322110 00000 000 0 11246777
Q ss_pred CCCcc------CCCCCEEEeCcccccc
Q 045826 357 EWLRV------EGCESVYALGDCATIN 377 (584)
Q Consensus 357 ~~l~~------~~~~~VfaiGD~a~~~ 377 (584)
++|+. +..+||||+|++....
T Consensus 367 ~~~~p~~~~g~~~~~nl~a~G~vl~g~ 393 (422)
T PRK05329 367 ATLRPLDSQGGPVIENLYAAGAVLGGY 393 (422)
T ss_pred CCcCcccCCCCeeccceEEeeehhcCC
Confidence 77775 2479999999998754
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.25 E-value=4.5e-11 Score=96.62 Aligned_cols=68 Identities=32% Similarity=0.580 Sum_probs=64.5
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEE
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKL 303 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v 303 (584)
+++|||||++|+|+|..+++++ .+|+++++.+.+++.+++.+.+.+.+.|++.||++++++.++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--------------~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--------------KEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--------------cEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 6899999999999999999865 89999999999999999999999999999999999999999999
Q ss_pred cC
Q 045826 304 SD 305 (584)
Q Consensus 304 ~~ 305 (584)
+.
T Consensus 67 ~~ 68 (80)
T PF00070_consen 67 EK 68 (80)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.00 E-value=1.2e-08 Score=103.78 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=56.6
Q ss_pred cccccc--ccHHHHHHHHHHHHhCCcEEEeCCceeEEcCC--eEEEEeCCCCeEEEEecceEEEccCCCCCc------hH
Q 045826 269 DHILNM--FDKRITASAEEKFKRDGIDLKTGSMVVKLSDK--EISTKDRATGQISSIPYGMVVWSTGIGTRP------VI 338 (584)
Q Consensus 269 ~~il~~--~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p------~~ 338 (584)
.+++|. -...+.+.+...+++.||+++++++|.+|+.+ ...+. +.+|++ +.||.+|+|+|-...| .-
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~-t~~g~~--i~~d~lilAtGG~S~P~lGstg~g 177 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLD-TSSGET--VKCDSLILATGGKSWPKLGSTGFG 177 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEE-cCCCCE--EEccEEEEecCCcCCCCCCCCchh
Confidence 445553 24577888999999999999999999999766 34444 355764 9999999999966665 44
Q ss_pred HHHHHHhCC
Q 045826 339 MDFMKQIGQ 347 (584)
Q Consensus 339 ~~l~~~~~l 347 (584)
-.++++.|+
T Consensus 178 y~iA~~~G~ 186 (408)
T COG2081 178 YPIARQFGH 186 (408)
T ss_pred hHHHHHcCC
Confidence 456666665
No 96
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.94 E-value=7.5e-08 Score=100.43 Aligned_cols=175 Identities=17% Similarity=0.218 Sum_probs=97.9
Q ss_pred CCeEEEECCcHHHHHHHHhccc---CCCeEEEEcCCCCCCC----CCccc----cccccccC------ccc---------
Q 045826 57 KKKVVVLGTGWAGTTFLKILKS---NSFEVQVVSPRNYFAF----TPLLP----SVTNGTVE------ARS--------- 110 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~---~g~~V~lid~~~~~~~----~p~~~----~~~~g~~~------~~~--------- 110 (584)
+++|+|||||++|+.+|.+|.+ ....|+|||+.+.++- .+..+ .+....++ +.+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 4799999999999999999972 2233999999876542 11110 11111110 000
Q ss_pred -------------------------ccHHHHHHHHHcCC-cEEEEEEEEEEEecC--CCEEEEeecCccCCCCCceEEEe
Q 045826 111 -------------------------IVEPIRNIVRKKGM-DIQFKEAECYKIDAE--KKQIYCRTTEDRTCGGKEEFALD 162 (584)
Q Consensus 111 -------------------------i~~~~~~~~~~~g~-~v~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~i~ 162 (584)
+...+..++++... .+.+++++++++.+. .....+....+ ....
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g--------~~~~ 152 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG--------PSEI 152 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC--------Ceee
Confidence 01112222222222 377889999888777 22222222221 2778
Q ss_pred CCEEEEccCCCCCCCCC--CCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHH
Q 045826 163 YDILVIAMGAQANTFNT--PGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAA 240 (584)
Q Consensus 163 yD~LVlAtGs~~~~~~i--pG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~ 240 (584)
+|-+|+|||..+..+.. ..+.+....+.+...+.. + .......+|+|+|.|.+-++....
T Consensus 153 ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~-------------l-----d~v~~~drVli~GsgLt~~D~v~~ 214 (474)
T COG4529 153 ADIIVLATGHSAPPADPAARDLKGSPRLIADPYPANA-------------L-----DGVDADDRVLIVGSGLTSIDQVLV 214 (474)
T ss_pred eeEEEEeccCCCCCcchhhhccCCCcceeccccCCcc-------------c-----ccccCCCceEEecCCchhHHHHHH
Confidence 99999999987544432 001111011111111100 0 111233479999999999999999
Q ss_pred HHHHHHHhHhhhCcCCCCCcEEEEecCCc
Q 045826 241 LHDFVIDDLSKLYPSLKEFTRITLLEAGD 269 (584)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 269 (584)
+.+.+. ..+||++.|..
T Consensus 215 l~~~gh------------~g~It~iSRrG 231 (474)
T COG4529 215 LRRRGH------------KGPITAISRRG 231 (474)
T ss_pred HhccCC------------ccceEEEeccc
Confidence 988652 36788877654
No 97
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.81 E-value=4.2e-07 Score=94.63 Aligned_cols=88 Identities=18% Similarity=0.358 Sum_probs=56.0
Q ss_pred HhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEE-EEeCCCCeEEEEecce
Q 045826 249 LSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEIS-TKDRATGQISSIPYGM 325 (584)
Q Consensus 249 ~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~-~~~~~~G~~~~i~~D~ 325 (584)
+.+.+|.+.+...-.+.......+ -+..+.+.+.+.+++.|++++++++|+++. +++++ +.. .+|+ +.+|.
T Consensus 121 ~~~~~p~~~~~~~~~~~~~~~g~i--~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~-~~g~---i~ad~ 194 (358)
T PF01266_consen 121 LRELFPFLNPRIEGGVFFPEGGVI--DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRT-SDGE---IRADR 194 (358)
T ss_dssp HHHHSTTSSTTTEEEEEETTEEEE--EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEE-TTEE---EEECE
T ss_pred hhhhhcccccchhhhhcccccccc--cccchhhhhHHHHHHhhhhccccccccchhhcccccccccc-cccc---cccce
Confidence 344455555444445554444433 247788888899999999999999999985 55666 443 4454 99999
Q ss_pred EEEccCCCCCchHHHHHHHhC
Q 045826 326 VVWSTGIGTRPVIMDFMKQIG 346 (584)
Q Consensus 326 vI~a~G~~~~p~~~~l~~~~~ 346 (584)
||+|+|.. ...++...+
T Consensus 195 vV~a~G~~----s~~l~~~~~ 211 (358)
T PF01266_consen 195 VVLAAGAW----SPQLLPLLG 211 (358)
T ss_dssp EEE--GGG----HHHHHHTTT
T ss_pred eEeccccc----ceeeeeccc
Confidence 99999942 334555554
No 98
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.77 E-value=1.5e-07 Score=98.80 Aligned_cols=90 Identities=18% Similarity=0.334 Sum_probs=59.5
Q ss_pred HHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEec
Q 045826 246 IDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPY 323 (584)
Q Consensus 246 ~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~ 323 (584)
++.+.+.-|.+.++..--+......+.. ..++...+.+.++++|++++++++|+.++ .+++....+.+|+++ ++|
T Consensus 124 ~~~i~~~eP~l~~~~~aal~~p~~giV~--~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~-~~a 200 (429)
T COG0579 124 KEEIKELEPLLNEGAVAALLVPSGGIVD--PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEET-LEA 200 (429)
T ss_pred HHHHHhhCccccccceeeEEcCCCceEc--HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEE-EEe
Confidence 3455566666654433222222222222 24566777788888899999999999985 344666666668764 999
Q ss_pred ceEEEccCCCCCchH
Q 045826 324 GMVVWSTGIGTRPVI 338 (584)
Q Consensus 324 D~vI~a~G~~~~p~~ 338 (584)
+.||.|+|..+.++.
T Consensus 201 k~Vin~AGl~Ad~la 215 (429)
T COG0579 201 KFVINAAGLYADPLA 215 (429)
T ss_pred eEEEECCchhHHHHH
Confidence 999999997666533
No 99
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.75 E-value=6.1e-08 Score=102.51 Aligned_cols=80 Identities=18% Similarity=0.304 Sum_probs=48.2
Q ss_pred ecCCccccccc--cHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCe-EEEEeCCCCeEEEEecceEEEccCCCCCchH-
Q 045826 265 LEAGDHILNMF--DKRITASAEEKFKRDGIDLKTGSMVVKLS--DKE-ISTKDRATGQISSIPYGMVVWSTGIGTRPVI- 338 (584)
Q Consensus 265 v~~~~~il~~~--~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~- 338 (584)
++...++.|.. ...+.+.+.+.+++.||+++++++|.+++ +++ ..+.. ++++. +.+|.||+|+|-.+.|.+
T Consensus 95 ~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~-~~~~~--~~a~~vILAtGG~S~p~~G 171 (409)
T PF03486_consen 95 IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKT-KNGGE--YEADAVILATGGKSYPKTG 171 (409)
T ss_dssp E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEE-TTTEE--EEESEEEE----SSSGGGT
T ss_pred EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeec-cCccc--ccCCEEEEecCCCCccccC
Confidence 34455565543 46677888899999999999999999994 455 34433 33554 999999999997666543
Q ss_pred -----HHHHHHhCC
Q 045826 339 -----MDFMKQIGQ 347 (584)
Q Consensus 339 -----~~l~~~~~l 347 (584)
-.+++++|.
T Consensus 172 S~G~gy~~a~~lGh 185 (409)
T PF03486_consen 172 SDGSGYRIAKKLGH 185 (409)
T ss_dssp -SSHHHHHHHHTT-
T ss_pred CCcHHHHHHHHCCC
Confidence 235666654
No 100
>PRK09897 hypothetical protein; Provisional
Probab=98.75 E-value=1.4e-07 Score=102.96 Aligned_cols=183 Identities=15% Similarity=0.140 Sum_probs=100.4
Q ss_pred CCeEEEECCcHHHHHHHHhcccC--CCeEEEEcCCCCCC----CCCc------ccc---------------cc-------
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSN--SFEVQVVSPRNYFA----FTPL------LPS---------------VT------- 102 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~--g~~V~lid~~~~~~----~~p~------~~~---------------~~------- 102 (584)
|++|+|||||++|+++|.+|.+. ..+|+|||++...+ |.+. +.. +.
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 47899999999999999999743 46899999976544 2210 000 00
Q ss_pred ------------ccccCccccc-HH----HHHHH---HHcCCcEEEE-EEEEEEEecCCCEEEEeecCccCCCCCceEEE
Q 045826 103 ------------NGTVEARSIV-EP----IRNIV---RKKGMDIQFK-EAECYKIDAEKKQIYCRTTEDRTCGGKEEFAL 161 (584)
Q Consensus 103 ------------~g~~~~~~i~-~~----~~~~~---~~~g~~v~~~-~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i 161 (584)
.+...++.+. .+ +..++ ...|..+.+. ..+|++|+..+..+.+....+ ...+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~g-------g~~i 153 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQD-------LPSE 153 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCC-------CeEE
Confidence 0111111111 11 22222 2333234444 558999988777666654221 0278
Q ss_pred eCCEEEEccCCCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHhcCCCCCHHHHhccceEEEECCChhHHHHHHHH
Q 045826 162 DYDILVIAMGAQANTFNTPGVVEHAHFLKEVEHAQRIRRSVIDCFERASLPNLSDEERKKILHFVVVGGGPTGVEFAAAL 241 (584)
Q Consensus 162 ~yD~LVlAtGs~~~~~~ipG~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVVGgG~~gvE~A~~l 241 (584)
.+|+||+|+|..+... .++...+ +.+..+... . +. ....+|+|+|.|.+.++++..|
T Consensus 154 ~aD~VVLAtGh~~p~~-~~~~~~y---i~~pw~~~~--------~--~~---------i~~~~V~I~GtGLt~iD~v~~L 210 (534)
T PRK09897 154 TFDLAVIATGHVWPDE-EEATRTY---FPSPWSGLM--------E--AK---------VDACNVGIMGTSLSGLDAAMAV 210 (534)
T ss_pred EcCEEEECCCCCCCCC-Chhhccc---cCCCCcchh--------h--cC---------CCCCeEEEECCCHHHHHHHHHH
Confidence 9999999999853211 1111111 111111000 0 00 1135999999999999999999
Q ss_pred HHHHHHhHhh--------hCcCCCCCcEEEEecCCcc
Q 045826 242 HDFVIDDLSK--------LYPSLKEFTRITLLEAGDH 270 (584)
Q Consensus 242 ~~~~~~~~~~--------~~~~~~~~~~V~lv~~~~~ 270 (584)
...+. .+.+ .|..-....+|+++.|..-
T Consensus 211 t~~gG-~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 211 AIQHG-SFIEDDKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred HhcCC-ceeccCCCcceeeecCCCCCceEEEEeCCCC
Confidence 85421 1111 1121224567888776553
No 101
>PLN02463 lycopene beta cyclase
Probab=98.71 E-value=9.7e-08 Score=102.42 Aligned_cols=111 Identities=16% Similarity=0.252 Sum_probs=71.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCc-------cc----------cccc--------------
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPL-------LP----------SVTN-------------- 103 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~-------~~----------~~~~-------------- 103 (584)
...+||+|||||+||+++|..|++.|++|+|||+++...+... +. ....
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 3457999999999999999999999999999999764332110 00 0000
Q ss_pred ---cccCcccccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCC
Q 045826 104 ---GTVEARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQAN 175 (584)
Q Consensus 104 ---g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~ 175 (584)
+.++...+...+.+.+...+ +++..++|+.|+..+..+.+...++ .++.+|+||.|+|....
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~~~~G--V~~~~~~V~~I~~~~~~~~V~~~dG--------~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERCIANG--VQFHQAKVKKVVHEESKSLVVCDDG--------VKIQASLVLDATGFSRC 170 (447)
T ss_pred CcceeEEHHHHHHHHHHHHhhcC--CEEEeeEEEEEEEcCCeEEEEECCC--------CEEEcCEEEECcCCCcC
Confidence 00011111122334444556 5577889999987766544433221 18999999999998754
No 102
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.67 E-value=1.5e-06 Score=92.96 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=33.1
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYF 92 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~ 92 (584)
|+||||||||+.|+++|++|++.|.+|+|+|+++..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 369999999999999999999999999999998743
No 103
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.61 E-value=2.3e-07 Score=103.40 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=63.8
Q ss_pred ceEEEECCCh--hHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccc--------------cHHHHHHHHHH
Q 045826 223 LHFVVVGGGP--TGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF--------------DKRITASAEEK 286 (584)
Q Consensus 223 ~~vvVVGgG~--~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~--------------~~~~~~~~~~~ 286 (584)
.++.|+|+|+ ++.|++..+...+ .+++++.+.+++++.+ ...+.+.+.+.
T Consensus 158 ~~~~~~G~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~ 223 (574)
T PRK12842 158 KTITFIGMMFNSSNADLKHFFNATR--------------SLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKS 223 (574)
T ss_pred ccccccceecccchHHHHHHHhhcc--------------chhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHH
Confidence 3788999988 7888888876643 4455554444444322 24566777888
Q ss_pred HHhCCcEEEeCCceeEEc--CCe---EEEEeCCCCeEEEEecc-eEEEccCC
Q 045826 287 FKRDGIDLKTGSMVVKLS--DKE---ISTKDRATGQISSIPYG-MVVWSTGI 332 (584)
Q Consensus 287 L~~~GV~v~~~~~V~~v~--~~~---v~~~~~~~G~~~~i~~D-~vI~a~G~ 332 (584)
+++.||+|++++.|+++. ++. |.+.+ .+++ .++.++ .||+|+|-
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~-~~~~-~~i~a~k~VVlAtGg 273 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTEGGRVVGARVID-AGGE-RRITARRGVVLACGG 273 (574)
T ss_pred HHhCCCEEEeCCEEEEEEeeCCEEEEEEEEc-CCce-EEEEeCCEEEEcCCC
Confidence 889999999999999984 333 33433 2233 357785 79999994
No 104
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.58 E-value=1.4e-07 Score=104.60 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=66.0
Q ss_pred ceEEEECCChhHHHHHHH-------HHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEE
Q 045826 223 LHFVVVGGGPTGVEFAAA-------LHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLK 295 (584)
Q Consensus 223 ~~vvVVGgG~~gvE~A~~-------l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~ 295 (584)
+.++++|++..++|.+.. +.+++ .+|+++...+..+..+...+...+.+.+++.||+++
T Consensus 161 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~ 226 (557)
T PRK07843 161 LNMVVMQQDYVWLNLLKRHPRGVLRALKVG--------------ARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVL 226 (557)
T ss_pred ccccccHHHHHHHHhhhcCchhHHHHHHHH--------------HHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEE
Confidence 378899999999998864 44443 355555544444445667788888899999999999
Q ss_pred eCCceeEEcC--Ce---EEEEeCCCCeEEEEecc-eEEEccC
Q 045826 296 TGSMVVKLSD--KE---ISTKDRATGQISSIPYG-MVVWSTG 331 (584)
Q Consensus 296 ~~~~V~~v~~--~~---v~~~~~~~G~~~~i~~D-~vI~a~G 331 (584)
++++++++.. +. |.... +|+...+.++ .||+|+|
T Consensus 227 ~~t~v~~l~~~~g~v~Gv~~~~--~g~~~~i~A~~~VIlAtG 266 (557)
T PRK07843 227 LNTPLTDLYVEDGRVTGVHAAE--SGEPQLIRARRGVILASG 266 (557)
T ss_pred eCCEEEEEEEeCCEEEEEEEEe--CCcEEEEEeceeEEEccC
Confidence 9999999853 33 33332 3555568885 6888777
No 105
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.56 E-value=3.4e-07 Score=92.88 Aligned_cols=109 Identities=18% Similarity=0.326 Sum_probs=68.8
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCc----cc----------------------ccccc-------
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPL----LP----------------------SVTNG------- 104 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~----~~----------------------~~~~g------- 104 (584)
+||+|||||++|+++|..|++.|++|+|||+.+.....+. .+ ....+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 4899999999999999999999999999999875432110 00 00000
Q ss_pred ------ccCcccccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCC
Q 045826 105 ------TVEARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQA 174 (584)
Q Consensus 105 ------~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~ 174 (584)
.++...+...+.+.+.+.++++ +...+|+.+..+++.+.+.-.. + ...+.+|++|+|+|...
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~-~~~~~v~~~~~~~~~~~~~~~~-----~--~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAEL-RLGTTVLDVEIHDDRVVVIVRG-----G--EGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEE-EeCcEEeeEEEeCCEEEEEEcC-----c--cEEEEeCEEEECCCcch
Confidence 0111122233455556666554 3567788876666554433211 1 13799999999999864
No 106
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.55 E-value=2.2e-06 Score=92.92 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=37.0
Q ss_pred CCCCeEEEECCcHHHHHHHHhccc----CCCeEEEEcCCCCCCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKS----NSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~----~g~~V~lid~~~~~~~~p 96 (584)
..+++|+|||||+|||++|.+|.+ +|.+|+|+|+++..++..
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 346899999999999999999986 478999999999888764
No 107
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.54 E-value=3.9e-06 Score=88.25 Aligned_cols=71 Identities=10% Similarity=0.220 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhC-CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC-cCCCce
Q 045826 277 KRITASAEEKFKRD-GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ-ANRRVL 353 (584)
Q Consensus 277 ~~~~~~~~~~L~~~-GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l-~~~g~i 353 (584)
..+...+.+.+.+. |++++.+++|++++.+.|.. ++|+ +.+|.||+|+|.....+...+...+++ ..++.+
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t---~~g~---i~a~~VV~A~G~~s~~l~~~~~~~~~~~p~~~q~ 217 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRT---SRGD---VHADQVFVCPGADFETLFPELFAASGVRRCKLQM 217 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEe---CCCc---EEeCEEEECCCCChhhhCcchhhccCcceEEEEe
Confidence 45666677777765 99999999999998764443 2364 689999999996544333222233344 234444
No 108
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.52 E-value=2.7e-06 Score=91.11 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCCCC
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIGTR 335 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 335 (584)
..+...+.+.+++.|++++++++|++++. +.+....+.++ + +.+|.||.|+|....
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~--~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-V--ITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-E--EeCCEEEECCCcchH
Confidence 45666777888899999999999999853 44432222334 3 899999999995443
No 109
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.50 E-value=4.4e-06 Score=87.84 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=67.8
Q ss_pred ccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCC-CCchHHHH---HHH---h
Q 045826 275 FDKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIG-TRPVIMDF---MKQ---I 345 (584)
Q Consensus 275 ~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~-~~p~~~~l---~~~---~ 345 (584)
.+..+.+.+.+.+++.|++++.+++|.+++ ++.++...+.++....+.+|.+|+|+|.. ...+...+ .+. +
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L 340 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGL 340 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCC
Confidence 357888889999999999999999999974 44454333233422249999999999966 44333222 000 1
Q ss_pred CC---cC----------------CCceeeCCCCccC----CCCCEEEeCccccc
Q 045826 346 GQ---AN----------------RRVLATDEWLRVE----GCESVYALGDCATI 376 (584)
Q Consensus 346 ~l---~~----------------~g~i~Vd~~l~~~----~~~~VfaiGD~a~~ 376 (584)
++ .+ +-+|.+|++||.. -.+|+||+|-+...
T Consensus 341 ~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G 394 (419)
T TIGR03378 341 DVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGG 394 (419)
T ss_pred CcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcC
Confidence 11 00 1147799999841 27899999999875
No 110
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.48 E-value=2.3e-06 Score=89.00 Aligned_cols=62 Identities=21% Similarity=0.414 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEEc--CCe--EEEEeCCCCeEEEEecceEEEccCCCCCchHHH
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKLS--DKE--ISTKDRATGQISSIPYGMVVWSTGIGTRPVIMD 340 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 340 (584)
..+.+.+.+.+++.|++++.+++++.++ .++ +.+.+..+|+..++.+|+||-|-| ....+..
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG--~~S~vR~ 176 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADG--AHSKVRK 176 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SG--TT-HHHH
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccC--cccchhh
Confidence 3556677788888899999999999874 344 445555567766799999999999 4544433
No 111
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.47 E-value=5.5e-06 Score=89.01 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=35.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~ 95 (584)
.++||+|||||+||++||..|++.|++|+|||+.++.+.+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 3589999999999999999999999999999998765543
No 112
>PRK10015 oxidoreductase; Provisional
Probab=98.45 E-value=3.6e-06 Score=90.44 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=35.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~ 95 (584)
.++||+|||||+||++||+.|++.|++|+|||+.++.+.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k 43 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK 43 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence 3589999999999999999999999999999998865443
No 113
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.44 E-value=1e-06 Score=93.41 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=66.6
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCc-------cc-----cc----ccc---------c--------
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPL-------LP-----SV----TNG---------T-------- 105 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~-------~~-----~~----~~g---------~-------- 105 (584)
||+|||||+||+++|..|++.|++|+|||+++..++... +. .. ..+ .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 699999999999999999999999999998875443210 00 00 000 0
Q ss_pred -cCcccccHHHHHHHHHcCCcEEEEEEEEEEEecC-CCEEEEeecCccCCCCCceEEEeCCEEEEccCCCC
Q 045826 106 -VEARSIVEPIRNIVRKKGMDIQFKEAECYKIDAE-KKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQA 174 (584)
Q Consensus 106 -~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~-~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~ 174 (584)
++...+...+.+.+...+ +.+..++|..+..+ ...+.+....+ .++.+++||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~g--v~~~~~~v~~i~~~~~~~~~v~~~~g--------~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGG--VLWLERKAIHAEADGVALSTVYCAGG--------QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcC--cEEEccEEEEEEecCCceeEEEeCCC--------CEEEeCEEEECCCCch
Confidence 000111122334444555 55678888888766 33333332211 2799999999999876
No 114
>PRK06847 hypothetical protein; Provisional
Probab=98.43 E-value=1.5e-06 Score=91.70 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
.+++|+|||||++|+++|..|++.|++|+|+|+++.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 367999999999999999999999999999998764
No 115
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.43 E-value=8.6e-07 Score=88.22 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=69.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCc-----cccc--------------------ccc--ccCc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPL-----LPSV--------------------TNG--TVEA 108 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~-----~~~~--------------------~~g--~~~~ 108 (584)
...||+|||||+||++||+.|++.|++|+|+|+++..+.... .+.. ..+ ..+.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~ 103 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADS 103 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccH
Confidence 357999999999999999999999999999999877653210 0000 000 0112
Q ss_pred ccccHHHHHHHHHcCCcEEEEEEEEEEEecCCC-EEE---EeecC--ccCCCCCceEEEeCCEEEEccCCC
Q 045826 109 RSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKK-QIY---CRTTE--DRTCGGKEEFALDYDILVIAMGAQ 173 (584)
Q Consensus 109 ~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~-~v~---~~~~~--~~~~~~~~~~~i~yD~LVlAtGs~ 173 (584)
.++...+.+...+.++++ +...+|.++..++. .+. +.... .... ..+...+.++++|+|+|..
T Consensus 104 ~~l~~~L~~~A~~~Gv~I-~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~-~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKI-FNGVSVEDVILREDPRVAGVVINWTPVEMAGL-HVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHHcCCEE-EcCceeceeeEeCCCcEEEEEEccccccccCC-CCCcEEEEcCEEEEEeCCC
Confidence 233334555556667554 33556777754332 221 11110 0000 0112489999999999974
No 116
>PLN02697 lycopene epsilon cyclase
Probab=98.42 E-value=1.3e-06 Score=95.43 Aligned_cols=107 Identities=16% Similarity=0.282 Sum_probs=67.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCC-----CCCccccc-----------------cccc--------
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFA-----FTPLLPSV-----------------TNGT-------- 105 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~-----~~p~~~~~-----------------~~g~-------- 105 (584)
..+||+|||||+||+++|..|++.|++|+|||+...+. |...+... ..+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 45799999999999999999999999999999753211 10000000 0000
Q ss_pred --cCcccccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEE---EeecCccCCCCCceEEEeCCEEEEccCCCC
Q 045826 106 --VEARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIY---CRTTEDRTCGGKEEFALDYDILVIAMGAQA 174 (584)
Q Consensus 106 --~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~---~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~ 174 (584)
++...+...+.+.+...+ ++++.++|+.|..+...+. +.++ .++.++.||.|+|...
T Consensus 187 g~V~R~~L~~~Ll~~a~~~G--V~~~~~~V~~I~~~~~~~~vv~~~dG----------~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESG--VSYLSSKVDRITEASDGLRLVACEDG----------RVIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcC--CEEEeeEEEEEEEcCCcEEEEEEcCC----------cEEECCEEEECCCcCh
Confidence 111111122334444556 5567889999976544322 2222 2799999999999875
No 117
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.40 E-value=1.1e-06 Score=95.88 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=40.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSV 101 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~ 101 (584)
.++||||||||++||+||..|++.|++|+|+||+...++.....++
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~ 47 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFEL 47 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEec
Confidence 4689999999999999999999999999999999888876544433
No 118
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.39 E-value=1.2e-06 Score=70.65 Aligned_cols=72 Identities=19% Similarity=0.393 Sum_probs=57.2
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEEec
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKIDA 138 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~ 138 (584)
+|+|||||+.|+.+|..|++.|.+|+||++++.+. +. ...++...+.+.+++.++++. ....+..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~---------~~~~~~~~~~~~l~~~gV~v~-~~~~v~~i~~ 68 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--PG---------FDPDAAKILEEYLRKRGVEVH-TNTKVKEIEK 68 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--TT---------SSHHHHHHHHHHHHHTTEEEE-ESEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--hh---------cCHHHHHHHHHHHHHCCCEEE-eCCEEEEEEE
Confidence 69999999999999999999999999999998754 11 123556667888989997663 4778888887
Q ss_pred CCCE
Q 045826 139 EKKQ 142 (584)
Q Consensus 139 ~~~~ 142 (584)
++..
T Consensus 69 ~~~~ 72 (80)
T PF00070_consen 69 DGDG 72 (80)
T ss_dssp ETTS
T ss_pred eCCE
Confidence 7654
No 119
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.39 E-value=1.7e-06 Score=92.01 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=71.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcccc---------ccc-cc------cC------------
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPS---------VTN-GT------VE------------ 107 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~---------~~~-g~------~~------------ 107 (584)
.++|||||||||||.+||+.|++.|++|+|+|+.+..+.++.... +.. .. +.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 468999999999999999999999999999999887666443210 000 00 00
Q ss_pred ------------cccccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCC
Q 045826 108 ------------ARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQA 174 (584)
Q Consensus 108 ------------~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~ 174 (584)
...+...+.....+.|..+ +...++..+..++..+.+....+ ..++.++++|.|.|...
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~-~~~~~~~~~~~~~~~~~~~~~~~-------~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAEL-YPGTRVTGVIREDDGVVVGVRAG-------DDEVRAKVVIDADGVNS 152 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEE-EeceEEEEEEEeCCcEEEEEEcC-------CEEEEcCEEEECCCcch
Confidence 0011122444555667554 34567777766654433322211 13899999999999764
No 120
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.38 E-value=1.4e-06 Score=92.66 Aligned_cols=56 Identities=13% Similarity=0.268 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCCCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIGTR 335 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 335 (584)
+..+.+.+.+.+++.|++++.+++|++++. +++.+.. .+| + +.+|.||.|+|....
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~-~~g-~--i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRT-TQG-E--YEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEE-CCC-E--EEeCEEEECCCcchH
Confidence 367778888899999999999999999853 3454443 334 3 899999999996443
No 121
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.37 E-value=2.4e-06 Score=92.16 Aligned_cols=100 Identities=17% Similarity=0.280 Sum_probs=75.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+|+++.+.+... . ..++...+.+.+++.++++ +...+|+.|
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------~-~~~~~~~~~~~l~~~GI~i-~~~~~V~~i 224 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR----------E-EPSVAALAKQYMEEDGITF-LLNAHTTEV 224 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC----------C-CHHHHHHHHHHHHHcCCEE-EcCCEEEEE
Confidence 578999999999999999999999999999998754211 1 1233445667788888654 335678999
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+.++..+.+.... .++.||.+|+|+|..|+..
T Consensus 225 ~~~~~~v~v~~~g---------~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 225 KNDGDQVLVVTED---------ETYRFDALLYATGRKPNTE 256 (438)
T ss_pred EecCCEEEEEECC---------eEEEcCEEEEeeCCCCCcc
Confidence 8766666554321 2799999999999998854
No 122
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.36 E-value=1.4e-06 Score=94.52 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHh----CC--cEEEeCCceeEEcC--Ce-EEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC
Q 045826 277 KRITASAEEKFKR----DG--IDLKTGSMVVKLSD--KE-ISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ 347 (584)
Q Consensus 277 ~~~~~~~~~~L~~----~G--V~v~~~~~V~~v~~--~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l 347 (584)
..+...+.+.+++ .| ++++++++|++++. ++ +.+.. .+|+ +.+|.||+|+|.... .++..+++
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T-~~G~---i~A~~VVvaAG~~S~----~La~~~Gi 282 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHT-NRGE---IRARFVVVSACGYSL----LFAQKMGY 282 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEE-CCCE---EEeCEEEECcChhHH----HHHHHhCC
Confidence 4566777788888 77 89999999999964 33 33333 4463 899999999994443 34444554
No 123
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.35 E-value=2.5e-06 Score=90.52 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=30.8
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPR 89 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~ 89 (584)
+||+||||||||+++|+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999987
No 124
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.35 E-value=1.1e-06 Score=91.30 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=64.5
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEE-cCCCCCCCCCcccc---c---------------------------------
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVV-SPRNYFAFTPLLPS---V--------------------------------- 101 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~li-d~~~~~~~~p~~~~---~--------------------------------- 101 (584)
||+|||||+||.+||..+++.|++|.|+ .+.+.++..+..+. .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 7999999999999999999999999999 33333333322111 1
Q ss_pred --cccc-----cCcccccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEE-eecCccCCCCCceEEEeCCEEEEccCC
Q 045826 102 --TNGT-----VEARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYC-RTTEDRTCGGKEEFALDYDILVIAMGA 172 (584)
Q Consensus 102 --~~g~-----~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~-~~~~~~~~~~~~~~~i~yD~LVlAtGs 172 (584)
+++. ++...+...+++.+.... ++.+++++|++|..+++.|.- ....+ ..+.+|.+|+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~-nl~i~~~~V~~l~~e~~~v~GV~~~~g--------~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHP-NLTIIQGEVTDLIVENGKVKGVVTKDG--------EEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTST-TEEEEES-EEEEEECTTEEEEEEETTS--------EEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCC-CeEEEEcccceEEecCCeEEEEEeCCC--------CEEecCEEEEeccc
Confidence 0110 111122333556665543 577899999999887776542 22211 28999999999998
No 125
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.35 E-value=1.4e-05 Score=83.59 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=29.9
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCC
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYF 92 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~ 92 (584)
+|+|||+|.|||++|..|.+. ++|+|+.|.+.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999876 999999987643
No 126
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.34 E-value=8.7e-06 Score=88.41 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEcCCe-EEEEeCCCCeEEEEecceEEEccCCCCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLSDKE-ISTKDRATGQISSIPYGMVVWSTGIGTR 335 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 335 (584)
+..+...+.+.+++.|++|+.++.|++++.+. +.+. +.+|+ +.+|.||+|+|....
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-t~~g~---v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVR-TPDGQ---VTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEE-eCCcE---EECCEEEEccccccc
Confidence 35666778888899999999999999996544 3333 34453 899999999995433
No 127
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.34 E-value=9.7e-06 Score=88.15 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEcC--C-eEEE--EeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLSD--K-EIST--KDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ 347 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~-~v~~--~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l 347 (584)
+..+...+.+.++++|++++++++|++++. + .+.+ .+..+|+..++.+|.||.|+|.... .+...+++
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~----~La~~~Gi 249 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL----PLLQKSGI 249 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH----HHHHHcCC
Confidence 356777888888889999999999999864 2 2333 2333453334899999999996444 34445554
No 128
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.34 E-value=3.2e-06 Score=90.26 Aligned_cols=104 Identities=19% Similarity=0.306 Sum_probs=79.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
.-+++++|||||+-|+..|..+++.|.+|||||+.+.+.- ....++...+.+.+++.++.+ +....++
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-----------~~D~ei~~~~~~~l~~~gv~i-~~~~~v~ 238 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-----------GEDPEISKELTKQLEKGGVKI-LLNTKVT 238 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-----------cCCHHHHHHHHHHHHhCCeEE-EccceEE
Confidence 4578999999999999999999999999999999986443 123467778888888866444 4577788
Q ss_pred EEecCCCEE--EEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 135 KIDAEKKQI--YCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 135 ~id~~~~~v--~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
.+...+..+ .++++.+ ..+.+|++++|+|.+|+..+
T Consensus 239 ~~~~~~~~v~v~~~~g~~--------~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 239 AVEKKDDGVLVTLEDGEG--------GTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred EEEecCCeEEEEEecCCC--------CEEEeeEEEEccCCccCCCC
Confidence 887665534 4444321 17889999999999998764
No 129
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.33 E-value=3.6e-06 Score=91.30 Aligned_cols=103 Identities=17% Similarity=0.286 Sum_probs=77.1
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.. . ...++...+.+.+++.++++ +...++..+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-----~------~d~e~~~~l~~~L~~~GI~i-~~~~~V~~i 237 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-----G------EDEDIAHILREKLENDGVKI-FTGAALKGL 237 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-----c------ccHHHHHHHHHHHHHCCCEE-EECCEEEEE
Confidence 57899999999999999999999999999998875321 1 12245566777888888665 345678899
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+.+...+.+.... +..++++|.||+|+|..|+...
T Consensus 238 ~~~~~~v~~~~~g-------~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 238 NSYKKQALFEYEG-------SIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred EEcCCEEEEEECC-------ceEEEEeCEEEEecCCccCCCC
Confidence 8777666654321 1237999999999999987643
No 130
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.33 E-value=3e-06 Score=86.21 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=71.5
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcc---c--------cccc-----cHHHHHHHHHHH
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDH---I--------LNMF-----DKRITASAEEKF 287 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~---i--------l~~~-----~~~~~~~~~~~L 287 (584)
+|+|||||++|+++|..|.+.+ .+|+|+++.+. + .|.+ +.++...+.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARAN--------------LKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 6999999999999999998754 78999997651 1 1322 367788888999
Q ss_pred HhCCcEEEeCCceeEEcCCe--EEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 288 KRDGIDLKTGSMVVKLSDKE--ISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 288 ~~~GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
++.|+++++ ++|++++.+. ..+.. .+|+. +.+|.+|+|+|..+
T Consensus 68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~-~~~~~--~~~d~liiAtG~~~ 112 (300)
T TIGR01292 68 VKFGAEIIY-EEVIKVDLSDRPFKVKT-GDGKE--YTAKAVIIATGASA 112 (300)
T ss_pred HHcCCeEEE-EEEEEEEecCCeeEEEe-CCCCE--EEeCEEEECCCCCc
Confidence 999999999 8899986543 33333 23554 99999999999644
No 131
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.32 E-value=1.1e-06 Score=98.03 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=36.9
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p 96 (584)
....||||||+|.+|+++|..+++.|++|+|||+++..++..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 51 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTT 51 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccc
Confidence 346799999999999999999999999999999988766543
No 132
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.31 E-value=2.8e-06 Score=93.00 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=32.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
..+||||||||+||++||..+++.|.+|+|||++.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 35899999999999999999999999999999884
No 133
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.31 E-value=4.6e-06 Score=82.79 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=68.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCc-----cccc---------c--ccc-----------cCc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPL-----LPSV---------T--NGT-----------VEA 108 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~-----~~~~---------~--~g~-----------~~~ 108 (584)
...||+|||||+||+++|+.|++.|++|+|+|+++.++.... ++.. . .+. .+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 367999999999999999999999999999999987653210 0000 0 000 001
Q ss_pred ccccHHHHHHHHHcCCcEEEEEEEEEEEecCCC--E---EEEeecCccCCC-CCceEEEeCCEEEEccCCC
Q 045826 109 RSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKK--Q---IYCRTTEDRTCG-GKEEFALDYDILVIAMGAQ 173 (584)
Q Consensus 109 ~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~--~---v~~~~~~~~~~~-~~~~~~i~yD~LVlAtGs~ 173 (584)
.++...+.....+.++++ +....|.++..++. . |.+......... ..+...+.++.+|.|||..
T Consensus 100 ~el~~~L~~~a~e~GV~I-~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 100 AEFISTLASKALQAGAKI-FNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHHcCCEE-ECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 122233444455667544 34667878765443 2 222211000000 0113489999999999964
No 134
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.31 E-value=3.3e-05 Score=85.57 Aligned_cols=84 Identities=21% Similarity=0.190 Sum_probs=53.5
Q ss_pred hHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--Ce---EEEEeCCCCeEEEEe
Q 045826 248 DLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KE---ISTKDRATGQISSIP 322 (584)
Q Consensus 248 ~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~---v~~~~~~~G~~~~i~ 322 (584)
.+.+.+|.+.++..--+..+...+ . +..+...+.+...++|++++++++|+++.. +. +.+.+..+|+..++.
T Consensus 123 e~~~~eP~l~~~~~ga~~~~dg~v-d--p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~ 199 (546)
T PRK11101 123 QALILEPAVNPALIGAVKVPDGTV-D--PFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIH 199 (546)
T ss_pred HHHHhCCCcCccceEEEEecCcEE-C--HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEE
Confidence 445556776544333344342222 1 345556666777889999999999999843 33 444444445444699
Q ss_pred cceEEEccCCCC
Q 045826 323 YGMVVWSTGIGT 334 (584)
Q Consensus 323 ~D~vI~a~G~~~ 334 (584)
+|.||.|+|...
T Consensus 200 A~~VVnAaG~wa 211 (546)
T PRK11101 200 APVVVNAAGIWG 211 (546)
T ss_pred CCEEEECCChhH
Confidence 999999999543
No 135
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.31 E-value=3.6e-06 Score=90.55 Aligned_cols=100 Identities=15% Similarity=0.295 Sum_probs=74.9
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
.++|+|||||+.|+.+|..|++.|.+|++|++.+.+... .. ..++...+.+.+++.|+++ +....+..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~---------~~-~~~~~~~~~~~l~~~gV~v-~~~~~v~~i 205 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK---------LF-DEEMNQIVEEELKKHEINL-RLNEEVDSI 205 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc---------cc-CHHHHHHHHHHHHHcCCEE-EeCCEEEEE
Confidence 479999999999999999999999999999988754211 01 1244556777888888665 346789999
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+.++..+.+.++. .+.+|.||+|+|..|+..
T Consensus 206 ~~~~~~v~~~~g~----------~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 206 EGEERVKVFTSGG----------VYQADMVILATGIKPNSE 236 (427)
T ss_pred ecCCCEEEEcCCC----------EEEeCEEEECCCccCCHH
Confidence 8776543443332 799999999999987643
No 136
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.30 E-value=5e-06 Score=90.62 Aligned_cols=104 Identities=21% Similarity=0.370 Sum_probs=74.2
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||++|+.+|..|++.|.+|+||++.+.+.- . ...++...+.+.+++.|+++ +...+|..+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~-----~------~~~~~~~~l~~~l~~~gI~i-~~~~~v~~i 247 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP-----T------EDAELSKEVARLLKKLGVRV-VTGAKVLGL 247 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC-----c------CCHHHHHHHHHHHHhcCCEE-EeCcEEEEE
Confidence 57999999999999999999999999999998875321 1 12245566777788888665 346678888
Q ss_pred ec--CCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DA--EKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~--~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+. +++...+.... + ++.+++||.+|+|+|..|+...
T Consensus 248 ~~~~~~~~~~~~~~~-----g-~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 248 TLKKDGGVLIVAEHN-----G-EEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred EEecCCCEEEEEEeC-----C-ceEEEEeCEEEEeeCCccCCCC
Confidence 74 34433222111 1 1237999999999999987643
No 137
>PRK06126 hypothetical protein; Provisional
Probab=98.30 E-value=1.2e-05 Score=89.36 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=34.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFA 93 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~ 93 (584)
...+|+|||||++|+++|..|++.|++|+|||+.+...
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~ 43 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTA 43 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 35799999999999999999999999999999986433
No 138
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.30 E-value=3.9e-06 Score=88.57 Aligned_cols=105 Identities=14% Similarity=0.208 Sum_probs=67.1
Q ss_pred eEEEECCcHHHHHHHHhc--ccCCCeEEEEcCCCCCCCCCccc------c------cccc------------cc------
Q 045826 59 KVVVLGTGWAGTTFLKIL--KSNSFEVQVVSPRNYFAFTPLLP------S------VTNG------------TV------ 106 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L--~~~g~~V~lid~~~~~~~~p~~~------~------~~~g------------~~------ 106 (584)
||+|||||+||+++|..| ++.|.+|+|||+++...+..... . +... ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 78899999999876553221100 0 0000 00
Q ss_pred ----CcccccHHHHHHHHHcCCcEEEEEEEEEEEecCCC--EEEEeecCccCCCCCceEEEeCCEEEEccCCCCC
Q 045826 107 ----EARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKK--QIYCRTTEDRTCGGKEEFALDYDILVIAMGAQAN 175 (584)
Q Consensus 107 ----~~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~--~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~ 175 (584)
+...+...+.+.+...+ +.++.++|..|+.... .|.+.++. ++.+++||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~--~~~~~~~V~~i~~~~~~~~v~~~~g~----------~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG--VIRLNARVTSIEETGDGVLVVLADGR----------TIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC--eEEEccEEEEEEecCceEEEEECCCC----------EEEeeEEEECCCcccc
Confidence 00001111222233233 5688999999998887 34444432 8999999999996544
No 139
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.29 E-value=4.1e-05 Score=80.79 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=52.0
Q ss_pred HhhhCcCCC-CCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecce
Q 045826 249 LSKLYPSLK-EFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGM 325 (584)
Q Consensus 249 ~~~~~~~~~-~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~ 325 (584)
+.+.+|.+. +....-++...+..+. +..+...+.+.+.+.|++++.+++|++++. +.+.+.. .+| . +.+|.
T Consensus 122 ~~~~~P~l~~~~~~~a~~~~~~g~v~--p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g-~--~~a~~ 195 (376)
T PRK11259 122 IRRRFPQFRLPDGYIALFEPDGGFLR--PELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTT-ADG-T--YEAKK 195 (376)
T ss_pred HHHhCCCCcCCCCceEEEcCCCCEEc--HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEe-CCC-E--EEeeE
Confidence 444566554 2333445554443332 345566666777889999999999999853 3455443 335 3 89999
Q ss_pred EEEccCCCCC
Q 045826 326 VVWSTGIGTR 335 (584)
Q Consensus 326 vI~a~G~~~~ 335 (584)
||.|+|....
T Consensus 196 vV~A~G~~~~ 205 (376)
T PRK11259 196 LVVSAGAWVK 205 (376)
T ss_pred EEEecCcchh
Confidence 9999995443
No 140
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.29 E-value=4.6e-06 Score=90.69 Aligned_cols=105 Identities=26% Similarity=0.395 Sum_probs=76.6
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.. . ...++...+.+.+++.++++ +.+.+|..|
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~------~~~~~~~~l~~~l~~~gV~i-~~~~~V~~i 239 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP-----G------EDKEISKLAERALKKRGIKI-KTGAKAKKV 239 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC-----c------CCHHHHHHHHHHHHHcCCEE-EeCCEEEEE
Confidence 47999999999999999999999999999999875421 1 11245566777888888665 335679999
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+.+++.+.+.... +.+..++++|.+|+|+|.+|+...
T Consensus 240 ~~~~~~v~v~~~~-----gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 240 EQTDDGVTVTLED-----GGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEeCCEEEEEEEe-----CCeeEEEEeCEEEEeeCCccCCCC
Confidence 8766555443211 111237999999999999987653
No 141
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.29 E-value=3.9e-05 Score=83.21 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=33.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcccC--CCeEEEEcCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSN--SFEVQVVSPRNYFAF 94 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~--g~~V~lid~~~~~~~ 94 (584)
...||||||||.+|+++|..|++. +.+|+|+|+.+..++
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~ 45 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAI 45 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcch
Confidence 456999999999999999999955 899999999555444
No 142
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.29 E-value=5.7e-06 Score=87.44 Aligned_cols=81 Identities=19% Similarity=0.333 Sum_probs=51.4
Q ss_pred HhhhCcCCC-CCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecce
Q 045826 249 LSKLYPSLK-EFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGM 325 (584)
Q Consensus 249 ~~~~~~~~~-~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~ 325 (584)
+.+.+|.+. +....-++.+....+. +..+.+.+.+.+++.|++++.+++|++++. +.+.+.. .+| + +.+|.
T Consensus 118 ~~~~~P~l~~~~~~~~~~~~~~g~i~--p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~-~~~-~--i~a~~ 191 (380)
T TIGR01377 118 LKQRFPNIRVPRNEVGLLDPNGGVLY--AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKT-TKG-S--YQANK 191 (380)
T ss_pred HHHhCCCCcCCCCceEEEcCCCcEEc--HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEe-CCC-E--EEeCE
Confidence 444556543 2222344444443332 345667777888889999999999999864 3444443 334 3 89999
Q ss_pred EEEccCCCCC
Q 045826 326 VVWSTGIGTR 335 (584)
Q Consensus 326 vI~a~G~~~~ 335 (584)
||+|+|....
T Consensus 192 vV~aaG~~~~ 201 (380)
T TIGR01377 192 LVVTAGAWTS 201 (380)
T ss_pred EEEecCcchH
Confidence 9999995433
No 143
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.28 E-value=6.1e-06 Score=88.97 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=34.4
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 53 GEFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 53 ~~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
.+..++||+||||||||+++|..|++.|++|+|+|++.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34557899999999999999999999999999999874
No 144
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.27 E-value=4.5e-06 Score=90.71 Aligned_cols=103 Identities=21% Similarity=0.361 Sum_probs=76.1
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.- . ...++...+.+.+++.++++ +...+|..|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-----~------~~~~~~~~~~~~l~~~gi~i-~~~~~v~~i 237 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP-----G------EDAEVSKVVAKALKKKGVKI-LTNTKVTAV 237 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC-----C------CCHHHHHHHHHHHHHcCCEE-EeCCEEEEE
Confidence 57999999999999999999999999999999875321 0 11234455677788888655 346688888
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+.+++.+.+.... + +...+++|.||+|+|..|+..
T Consensus 238 ~~~~~~v~v~~~~-----g-~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 238 EKNDDQVVYENKG-----G-ETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEeCCEEEEEEeC-----C-cEEEEEeCEEEEecCCcccCC
Confidence 8776666554321 1 123799999999999998765
No 145
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.27 E-value=3.2e-05 Score=85.00 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=35.8
Q ss_pred EEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcc
Q 045826 60 VVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLL 98 (584)
Q Consensus 60 VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~ 98 (584)
|||||||.+||+||..|++.|++|+|+|+++..++....
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t 39 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGV 39 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEE
Confidence 699999999999999999999999999999998886543
No 146
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.27 E-value=1.2e-06 Score=81.93 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=49.7
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGM 124 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~ 124 (584)
..||+||||||+||+||++|++.|++|++||++.++++..+.-.... +.--+..+-+.+++..++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf---~~iVv~~~a~~iL~e~gI 94 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLF---NKIVVREEADEILDEFGI 94 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccccccccc---ceeeecchHHHHHHHhCC
Confidence 46999999999999999999999999999999999887543222211 112345567788888873
No 147
>PRK07233 hypothetical protein; Provisional
Probab=98.26 E-value=1.2e-05 Score=86.54 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=35.6
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p 96 (584)
+|||||||++||+||+.|.+.|++|+|+|+++..++..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 69999999999999999999999999999999988754
No 148
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.26 E-value=6.8e-06 Score=86.88 Aligned_cols=101 Identities=16% Similarity=0.267 Sum_probs=73.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. ..+......+.+.+++.++++ +...++..+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l~~~l~~~gV~i-~~~~~v~~i 209 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS----------LMPPEVSSRLQHRLTEMGVHL-LLKSQLQGL 209 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch----------hCCHHHHHHHHHHHHhCCCEE-EECCeEEEE
Confidence 478999999999999999999999999999998753210 112234456777788888554 235788888
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANT 176 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~ 176 (584)
+.+...+.+...++ .++++|.+|+|+|..|+.
T Consensus 210 ~~~~~~~~v~~~~g--------~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 210 EKTDSGIRATLDSG--------RSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred EccCCEEEEEEcCC--------cEEECCEEEECcCCCcch
Confidence 87665443332221 289999999999998764
No 149
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.26 E-value=0.00011 Score=80.08 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCC-cEEEeCCceeEEc--CCe-E--EEEeCCCCeEEEEecceEEEccCCCCCc
Q 045826 277 KRITASAEEKFKRDG-IDLKTGSMVVKLS--DKE-I--STKDRATGQISSIPYGMVVWSTGIGTRP 336 (584)
Q Consensus 277 ~~~~~~~~~~L~~~G-V~v~~~~~V~~v~--~~~-v--~~~~~~~G~~~~i~~D~vI~a~G~~~~p 336 (584)
..+.+.+.+.+++.| |+++++++|++++ .++ + ++.+..+|+..++.++.||.|+|....+
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 466777778888876 9999999999985 343 3 3332334542248999999999965543
No 150
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.25 E-value=5.9e-06 Score=87.58 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=33.2
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYF 92 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~ 92 (584)
+.+|+|||||+||+++|..|++.|++|+|+|+.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 569999999999999999999999999999988653
No 151
>PRK06834 hypothetical protein; Provisional
Probab=98.24 E-value=4.4e-06 Score=91.20 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=70.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCC-CC----ccc-------------ccc--------cc----c
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAF-TP----LLP-------------SVT--------NG----T 105 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~-~p----~~~-------------~~~--------~g----~ 105 (584)
+..+|+|||||++|+++|..|++.|++|+|||+.+.... .+ +.+ .+. .+ .
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 458999999999999999999999999999998764211 00 000 000 00 0
Q ss_pred cCcc---------------cccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEcc
Q 045826 106 VEAR---------------SIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAM 170 (584)
Q Consensus 106 ~~~~---------------~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAt 170 (584)
++.. .+..-+.+.+++.++++ +...+++.+..++..+.+....+ .++.+|+||.|.
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i-~~~~~v~~v~~~~~~v~v~~~~g--------~~i~a~~vVgAD 152 (488)
T PRK06834 82 LDISDFPTRHNYGLALWQNHIERILAEWVGELGVPI-YRGREVTGFAQDDTGVDVELSDG--------RTLRAQYLVGCD 152 (488)
T ss_pred cccccCCCCCCccccccHHHHHHHHHHHHHhCCCEE-EcCCEEEEEEEcCCeEEEEECCC--------CEEEeCEEEEec
Confidence 0000 01111334445556555 34678888887777666554221 179999999999
Q ss_pred CCCCCC
Q 045826 171 GAQANT 176 (584)
Q Consensus 171 Gs~~~~ 176 (584)
|..+..
T Consensus 153 G~~S~v 158 (488)
T PRK06834 153 GGRSLV 158 (488)
T ss_pred CCCCCc
Confidence 997643
No 152
>PRK07236 hypothetical protein; Provisional
Probab=98.24 E-value=8.4e-06 Score=86.46 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=34.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
+++++|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4568999999999999999999999999999999864
No 153
>PRK06184 hypothetical protein; Provisional
Probab=98.23 E-value=6.5e-06 Score=90.47 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=33.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
+..+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457999999999999999999999999999998754
No 154
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.23 E-value=7.8e-06 Score=86.86 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
..+.+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 3467999999999999999999999999999999763
No 155
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.23 E-value=7.6e-06 Score=75.07 Aligned_cols=104 Identities=18% Similarity=0.331 Sum_probs=63.8
Q ss_pred EEECCcHHHHHHHHhcccC-----CCeEEEEcCCCCCCCCCccc--------cccccccC-----c--------------
Q 045826 61 VVLGTGWAGTTFLKILKSN-----SFEVQVVSPRNYFAFTPLLP--------SVTNGTVE-----A-------------- 108 (584)
Q Consensus 61 VIVGgG~AGl~aA~~L~~~-----g~~V~lid~~~~~~~~p~~~--------~~~~g~~~-----~-------------- 108 (584)
+|||+|++|++++.+|.+. ..+|+|||+++.-.+.+..+ ....+.+. +
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999844 57899999965421211000 00000000 0
Q ss_pred -------cc----------ccHHHHHHHHH--cCCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEc
Q 045826 109 -------RS----------IVEPIRNIVRK--KGMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIA 169 (584)
Q Consensus 109 -------~~----------i~~~~~~~~~~--~g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlA 169 (584)
.. +...++.+++. .+++++++..+|++|+.......+....+ ..+.+|+||+|
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g--------~~~~~d~VvLa 152 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADG--------QSIRADAVVLA 152 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCC--------CEEEeCEEEEC
Confidence 00 01112222222 35678899999999998877644433221 18899999999
Q ss_pred cCC
Q 045826 170 MGA 172 (584)
Q Consensus 170 tGs 172 (584)
||.
T Consensus 153 ~Gh 155 (156)
T PF13454_consen 153 TGH 155 (156)
T ss_pred CCC
Confidence 995
No 156
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.22 E-value=2.1e-05 Score=87.22 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=35.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFA 93 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~ 93 (584)
...++|+|||||++|+++|..|++.|++|+|||+.+...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 456899999999999999999999999999999997543
No 157
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.22 E-value=0.00013 Score=77.85 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEEc-C--CeEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKLS-D--KEISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~-~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
..+...+.+.+++.|++++.+++|++++ . +.+....+.+|. +.++.||+|+|...
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~---i~a~~vVvaagg~~ 240 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGF---IGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCce---EECCEEEECCChhh
Confidence 3455556788889999999999999994 2 334323334463 89999999988433
No 158
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.22 E-value=7.3e-06 Score=88.63 Aligned_cols=99 Identities=32% Similarity=0.491 Sum_probs=71.5
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccc------cccc-----c--HHHHHHHHHHHHhC
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHI------LNMF-----D--KRITASAEEKFKRD 290 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i------l~~~-----~--~~~~~~~~~~L~~~ 290 (584)
+|+|||||+.|+.+|..|++.. ++.+|+|+++.+.+ ++.+ + ..+.....+.+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~------------~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN------------KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKS 69 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC------------CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHC
Confidence 7999999999999999998753 34799999998863 2211 1 12233345668889
Q ss_pred CcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 291 GIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 291 GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
||++++++.|++|+. +.+.+.+..+|+..++.+|.+|+|||.++
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 999999999999964 34666543335542344999999999543
No 159
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.21 E-value=3.4e-05 Score=82.65 Aligned_cols=57 Identities=21% Similarity=0.359 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEE--cCCe---EEEEeCCCCeEEEEecceEEEccCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKL--SDKE---ISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v--~~~~---v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
...+.+.+.+.+++.||+|+++++++++ +++. +.+.+..+|+..++.++.||+|+|-
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG 201 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGG 201 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCc
Confidence 4677888899999999999999999998 3443 5555445688778999999999994
No 160
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.20 E-value=2.8e-05 Score=82.69 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=32.9
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
+.+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47899999999999999999999999999999874
No 161
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.20 E-value=9.4e-06 Score=86.92 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=33.4
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYF 92 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~ 92 (584)
.+||+|||||+||+++|..|++.|++|+|||+.+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 579999999999999999999999999999988653
No 162
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.20 E-value=1.2e-05 Score=87.81 Aligned_cols=104 Identities=21% Similarity=0.313 Sum_probs=75.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||+|+.|+.+|..|++.|.+|+||++.+.+... . ..++...+.+.+++.++++ +...+|+.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------~-d~~~~~~~~~~l~~~gi~i-~~~~~v~~i 250 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA----------A-DEQVAKEAAKAFTKQGLDI-HLGVKIGEI 250 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc----------C-CHHHHHHHHHHHHHcCcEE-EeCcEEEEE
Confidence 579999999999999999999999999999998753211 1 2344556667777788554 335689999
Q ss_pred ecCCCEEEEe--ecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQIYCR--TTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~v~~~--~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+.++..+.+. ++. .++..+++|.|++|+|..|+...
T Consensus 251 ~~~~~~v~v~~~~~~------g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 251 KTGGKGVSVAYTDAD------GEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EEcCCEEEEEEEeCC------CceeEEEcCEEEEccCCccCCCC
Confidence 8766554433 221 11237999999999999988653
No 163
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.18 E-value=8.1e-06 Score=87.00 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=31.6
Q ss_pred CCeEEEECCcHHHHHHHHhcccCC--CeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNS--FEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g--~~V~lid~~~~ 91 (584)
++||+|||||++|+++|..|++.| ++|+|||+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 478999999999999999999875 99999999754
No 164
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.18 E-value=1.1e-05 Score=87.73 Aligned_cols=105 Identities=15% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+||++.+.+.. . . ..++...+.+.+++.++++ +...+|+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~-----~-d~~~~~~l~~~l~~~gV~i-~~~~~V~~i 233 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-----R-----E-EPEISAAVEEALAEEGIEV-VTSAQVKAV 233 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-----c-----c-CHHHHHHHHHHHHHcCCEE-EcCcEEEEE
Confidence 47999999999999999999999999999999875321 1 1 1234556777888888655 335668888
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+.+++.+.+..... + ...++++|.+|+|+|..|+...
T Consensus 234 ~~~~~~~~v~~~~~----~-~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 234 SVRGGGKIITVEKP----G-GQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEcCCEEEEEEEeC----C-CceEEEeCEEEEeECCCcCCCC
Confidence 76654333221100 0 1137999999999999987653
No 165
>PRK06370 mercuric reductase; Validated
Probab=98.18 E-value=1.1e-05 Score=87.79 Aligned_cols=102 Identities=22% Similarity=0.419 Sum_probs=74.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+|+++.+.+... ...++...+.+.+++.++++ +...+|..+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-----------~~~~~~~~l~~~l~~~GV~i-~~~~~V~~i 238 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-----------EDEDVAAAVREILEREGIDV-RLNAECIRV 238 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-----------cCHHHHHHHHHHHHhCCCEE-EeCCEEEEE
Confidence 579999999999999999999999999999998754311 11244556777888888655 336688888
Q ss_pred ecCCCEE--EEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKKQI--YCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~~v--~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+.+++.+ .+.... + ...+++|.||+|+|.+|+..
T Consensus 239 ~~~~~~~~v~~~~~~-----~--~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 239 ERDGDGIAVGLDCNG-----G--APEITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEcCCEEEEEEEeCC-----C--ceEEEeCEEEECcCCCcCCC
Confidence 8765433 332211 1 13799999999999998765
No 166
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.17 E-value=2.4e-05 Score=83.01 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCC-cEEEeCCceeEEcCC--eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHH
Q 045826 277 KRITASAEEKFKRDG-IDLKTGSMVVKLSDK--EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDF 341 (584)
Q Consensus 277 ~~~~~~~~~~L~~~G-V~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l 341 (584)
..+.+.+.+.+.+.+ |+++.+++|+.++.+ .+.+.-..+|++ +.||+||-|-| .+..+...
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~--~~a~llVgADG--~~S~vR~~ 167 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGET--LDADLLVGADG--ANSAVRRA 167 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcE--EecCEEEECCC--CchHHHHh
Confidence 455666777777665 999999999999644 444332215774 99999999999 56555444
No 167
>PRK08013 oxidoreductase; Provisional
Probab=98.17 E-value=3.1e-05 Score=82.57 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=33.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
.+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 47999999999999999999999999999999875
No 168
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.17 E-value=2.8e-05 Score=82.80 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHHHhCCcEEEeCCceeEEcCC--eEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 275 FDKRITASAEEKFKRDGIDLKTGSMVVKLSDK--EISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 275 ~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
....+.+.+.+.+++.||+++++++|++++.+ .+.+.. +++. +.+|.||+|+|...
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~--~~~~--i~ad~VIlAtG~~s 160 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET--SGGE--YEADKVILATGGLS 160 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE--CCcE--EEcCEEEECCCCcc
Confidence 34678888889999999999999999998542 333333 2444 89999999999644
No 169
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.17 E-value=1.1e-05 Score=85.80 Aligned_cols=98 Identities=16% Similarity=0.251 Sum_probs=70.3
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+... ..+..+...+.+.+++.++++ +...+++.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~l~~~l~~~GV~i-~~~~~V~~i 212 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR----------NAPPPVQRYLLQRHQQAGVRI-LLNNAIEHV 212 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh----------hcCHHHHHHHHHHHHHCCCEE-EeCCeeEEE
Confidence 478999999999999999999999999999988753221 112233445667777888655 235678888
Q ss_pred ecCCC-EEEEeecCccCCCCCceEEEeCCEEEEccCCCCC
Q 045826 137 DAEKK-QIYCRTTEDRTCGGKEEFALDYDILVIAMGAQAN 175 (584)
Q Consensus 137 d~~~~-~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~ 175 (584)
+.+.. .+.+.++. .+.+|.+|+|+|..|+
T Consensus 213 ~~~~~~~v~l~~g~----------~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 213 VDGEKVELTLQSGE----------TLQADVVIYGIGISAN 242 (396)
T ss_pred EcCCEEEEEECCCC----------EEECCEEEECCCCChh
Confidence 75322 23333322 7999999999999875
No 170
>PRK07588 hypothetical protein; Provisional
Probab=98.13 E-value=2.7e-05 Score=82.74 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=31.9
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
.+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 4899999999999999999999999999999864
No 171
>PRK14694 putative mercuric reductase; Provisional
Probab=98.13 E-value=1.8e-05 Score=86.22 Aligned_cols=100 Identities=19% Similarity=0.340 Sum_probs=74.3
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||+|+.|+.+|..|++.|.+|+|+++...+ +. ...++...+.+.+++.|+++ +....+..+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l------~~------~~~~~~~~l~~~l~~~GI~v-~~~~~v~~i 244 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL------SQ------EDPAVGEAIEAAFRREGIEV-LKQTQASEV 244 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC------CC------CCHHHHHHHHHHHHhCCCEE-EeCCEEEEE
Confidence 579999999999999999999999999999864211 11 12245566788888888654 235688888
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+.+++.+.+.... .++.+|.||+|+|..|+...
T Consensus 245 ~~~~~~~~v~~~~---------~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 245 DYNGREFILETNA---------GTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred EEcCCEEEEEECC---------CEEEeCEEEEccCCCCCcCC
Confidence 8776655554321 16999999999999987653
No 172
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.13 E-value=1.6e-05 Score=86.41 Aligned_cols=101 Identities=18% Similarity=0.305 Sum_probs=74.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- . ...++...+.+.+++.++++ +....++.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~----------~-~d~~~~~~l~~~l~~~gI~v-~~~~~v~~i 242 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS----------F-LDDEISDALSYHLRDSGVTI-RHNEEVEKV 242 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC----------c-CCHHHHHHHHHHHHHcCCEE-EECCEEEEE
Confidence 57999999999999999999999999999999875321 1 12245566777788888655 346688888
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+.++..+.+....+ .++++|.+|+|+|.+|+..
T Consensus 243 ~~~~~~~~v~~~~g--------~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 243 EGGDDGVIVHLKSG--------KKIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEeCCeEEEEECCC--------CEEEeCEEEEeecCCcccc
Confidence 76555444432211 1799999999999998765
No 173
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.12 E-value=1.2e-05 Score=86.73 Aligned_cols=97 Identities=15% Similarity=0.290 Sum_probs=73.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.. . ...++...+.+.+++.|+++ +.+.+|..+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-----~------~d~~~~~~l~~~l~~~gI~i-~~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-----L------MDADMNQPILDELDKREIPY-RLNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-----h------cCHHHHHHHHHHHHhcCCEE-EECCeEEEE
Confidence 47899999999999999999999999999998875321 0 11245566778888888665 236778888
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+. ..+.+.++. .+.+|.+++|+|.+|+..
T Consensus 216 ~~--~~v~~~~g~----------~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 216 NG--NEVTFKSGK----------VEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred eC--CEEEECCCC----------EEEeCEEEECcCCCcChH
Confidence 74 356654432 789999999999998754
No 174
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.12 E-value=1.6e-05 Score=85.92 Aligned_cols=101 Identities=15% Similarity=0.260 Sum_probs=73.2
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.. . . ..++...+.+.+++.++++ +...+|..+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-----~-----~-d~~~~~~l~~~l~~~gV~i-~~~~~v~~i 233 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR-----G-----F-DDDMRALLARNMEGRGIRI-HPQTSLTSI 233 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc-----c-----c-CHHHHHHHHHHHHHCCCEE-EeCCEEEEE
Confidence 57899999999999999999999999999998765321 1 1 1244555677788888655 336678888
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+.....+.+...++ ..+++|.+|+|+|..|+..
T Consensus 234 ~~~~~~~~v~~~~g--------~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 234 TKTDDGLKVTLSHG--------EEIVADVVLFATGRSPNTK 266 (446)
T ss_pred EEcCCeEEEEEcCC--------cEeecCEEEEeeCCCcCCC
Confidence 76444343332111 2799999999999998764
No 175
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.12 E-value=1.3e-05 Score=85.52 Aligned_cols=34 Identities=18% Similarity=0.452 Sum_probs=31.9
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
.++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3689999999999999999999999999999876
No 176
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.12 E-value=1.6e-05 Score=84.40 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=32.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
..+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 356999999999999999999999999999999754
No 177
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.11 E-value=1.8e-05 Score=85.52 Aligned_cols=101 Identities=26% Similarity=0.407 Sum_probs=75.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYK 135 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~ 135 (584)
.+++|+|||+|+.|+.+|..|++.|.+|+||++.+.+.- . . ..++...+.+.+++.|+++ +...++..
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~-----~-~~~~~~~l~~~l~~~gV~v-~~~~~v~~ 224 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP-----R-----E-DRDIADNIATILRDQGVDI-ILNAHVER 224 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC-----C-----c-CHHHHHHHHHHHHhCCCEE-EeCCEEEE
Confidence 357999999999999999999999999999999764321 1 0 1244556778888888665 23677888
Q ss_pred EecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 136 IDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 136 id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
++.++..+.+.... .++.+|.+++|+|..|+..
T Consensus 225 i~~~~~~v~v~~~~---------g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 225 ISHHENQVQVHSEH---------AQLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEcCCEEEEEEcC---------CeEEeCEEEEeecCCcCCC
Confidence 88766656554321 1688999999999998764
No 178
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.11 E-value=1.3e-05 Score=85.26 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=33.2
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYF 92 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~ 92 (584)
+.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 579999999999999999999999999999998653
No 179
>PRK08244 hypothetical protein; Provisional
Probab=98.10 E-value=1.2e-05 Score=88.12 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=32.5
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
.++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 36899999999999999999999999999998754
No 180
>PRK07846 mycothione reductase; Reviewed
Probab=98.10 E-value=2.1e-05 Score=85.15 Aligned_cols=101 Identities=17% Similarity=0.282 Sum_probs=71.3
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- . . ..++...+.+++ +.++++ +.+.+++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-----~-----~-d~~~~~~l~~l~-~~~v~i-~~~~~v~~i 232 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-----H-----L-DDDISERFTELA-SKRWDV-RLGRNVVGV 232 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-----c-----c-CHHHHHHHHHHH-hcCeEE-EeCCEEEEE
Confidence 57999999999999999999999999999999875431 1 1 122333444444 345444 346788899
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+.+++.+.+...++ ..+++|.|++|+|.+|+...
T Consensus 233 ~~~~~~v~v~~~~g--------~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 233 SQDGSGVTLRLDDG--------STVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EEcCCEEEEEECCC--------cEeecCEEEEEECCccCccc
Confidence 87665444433211 27999999999999988654
No 181
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.09 E-value=2.3e-05 Score=83.05 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=35.4
Q ss_pred CeEEEECCcHHHHHHHHhcccCC--CeEEEEcCCCCCCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNS--FEVQVVSPRNYFAFTP 96 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g--~~V~lid~~~~~~~~p 96 (584)
++|+|||||++||++|++|++.+ ++|+|+|+.++.++..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l 41 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLL 41 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceE
Confidence 47999999999999999999877 9999999999888753
No 182
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.09 E-value=7.5e-05 Score=74.33 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=86.1
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccc-----------------------------
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM----------------------------- 274 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~----------------------------- 274 (584)
.|+|||+|++|+-+|..+++.+ .+|.++++.+.+...
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G--------------~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAG--------------LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 8999999999999999998754 678887766543110
Q ss_pred ---------ccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CC-eE---EEEeC---CCC---eEEEEecceEEEccCCC
Q 045826 275 ---------FDKRITASAEEKFKRDGIDLKTGSMVVKLS--DK-EI---STKDR---ATG---QISSIPYGMVVWSTGIG 333 (584)
Q Consensus 275 ---------~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~-~v---~~~~~---~~G---~~~~i~~D~vI~a~G~~ 333 (584)
-...+...+.+..++.|++++.++.|.++. ++ .+ ++... .+| +...+.++.||.|+|..
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 012444556667778899999999998874 33 32 22110 111 22359999999999953
Q ss_pred CCchHHHHHHHhC-----CcC-------CC-ceeeCCCCccCCCCCEEEeCcccc
Q 045826 334 TRPVIMDFMKQIG-----QAN-------RR-VLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 334 ~~p~~~~l~~~~~-----l~~-------~g-~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
. +....+.+..+ +.. ++ ...|+.+-++ +|++|++|=++.
T Consensus 173 a-~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~ 224 (257)
T PRK04176 173 A-EVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAAN 224 (257)
T ss_pred c-HHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhh
Confidence 3 34434444322 111 11 2334444444 899999999876
No 183
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.08 E-value=0.00017 Score=81.04 Aligned_cols=57 Identities=9% Similarity=0.103 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEc-C--Ce---EEEEeCCCCeEEEEecceEEEccCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLS-D--KE---ISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~-~--~~---v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
...+...+.+.+.+.||+++.++.++++. . +. +...+..+|+...+.++.||+|||-
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 35566666677777899999999999953 2 33 3343444577667899999999994
No 184
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.08 E-value=0.00016 Score=81.30 Aligned_cols=84 Identities=20% Similarity=0.180 Sum_probs=55.0
Q ss_pred HhHhhhCcCCCCC-----cEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC----Ce---EEEEeCC
Q 045826 247 DDLSKLYPSLKEF-----TRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD----KE---ISTKDRA 314 (584)
Q Consensus 247 ~~~~~~~~~~~~~-----~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~----~~---v~~~~~~ 314 (584)
+.+.+.+|.+.++ ..-.++. .+... -+..+...+.+..++.|++++.+++|+++.. +. |.+.+..
T Consensus 200 ~e~~~~~P~L~~~~~~~~l~ga~~~-~Dg~v--dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~ 276 (627)
T PLN02464 200 KESLELFPTLAKKGKDGSLKGTVVY-YDGQM--NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNL 276 (627)
T ss_pred HHHHHhCCCCCccccccceeEEEEe-cCcEE--cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECC
Confidence 4455667777643 3323332 23222 2467777788888999999999999999842 33 3444434
Q ss_pred CCeEEEEecceEEEccCCC
Q 045826 315 TGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 315 ~G~~~~i~~D~vI~a~G~~ 333 (584)
+|+..++.+|.||.|+|..
T Consensus 277 tg~~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 277 TGKEFDVYAKVVVNAAGPF 295 (627)
T ss_pred CCcEEEEEeCEEEECCCHh
Confidence 4554458999999999943
No 185
>PRK07190 hypothetical protein; Provisional
Probab=98.08 E-value=2.1e-05 Score=85.79 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=32.6
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
..+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 47999999999999999999999999999998864
No 186
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.07 E-value=4.8e-05 Score=84.57 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=34.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYF 92 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~ 92 (584)
.+.+|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 5679999999999999999999999999999999754
No 187
>PLN02487 zeta-carotene desaturase
Probab=98.07 E-value=5.9e-05 Score=83.23 Aligned_cols=40 Identities=28% Similarity=0.397 Sum_probs=36.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~ 95 (584)
.+++|+|||||++|+++|..|.+.|++|+|+|+.+..++.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~ 113 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGK 113 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCc
Confidence 3469999999999999999999999999999999987754
No 188
>PRK06116 glutathione reductase; Validated
Probab=98.07 E-value=2.2e-05 Score=84.98 Aligned_cols=102 Identities=21% Similarity=0.265 Sum_probs=74.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+++++.+.+.- . ...++...+.+.+++.++++ +...+|..+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----~------~~~~~~~~l~~~L~~~GV~i-~~~~~V~~i 234 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-----G------FDPDIRETLVEEMEKKGIRL-HTNAVPKAV 234 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-----c------cCHHHHHHHHHHHHHCCcEE-ECCCEEEEE
Confidence 57999999999999999999999999999998865321 0 11245566777888888655 336678888
Q ss_pred ecCCCE-EEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQ-IYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~-v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+.+++. +.+....+ .++++|.+|+|+|..|+...
T Consensus 235 ~~~~~g~~~v~~~~g--------~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 235 EKNADGSLTLTLEDG--------ETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred EEcCCceEEEEEcCC--------cEEEeCEEEEeeCCCcCCCC
Confidence 764332 33332211 17999999999999987653
No 189
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.07 E-value=2.3e-05 Score=82.41 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=30.7
Q ss_pred eEEEECCcHHHHHHHHhcccC--CCeEEEEcCCCCC
Q 045826 59 KVVVLGTGWAGTTFLKILKSN--SFEVQVVSPRNYF 92 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~--g~~V~lid~~~~~ 92 (584)
||+|||||+||+++|..|++. |++|+|+|+.+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 699999999999999999865 9999999998743
No 190
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.07 E-value=2.2e-05 Score=85.36 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=74.6
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+|+++.+...- . . ..++...+.+.+++.++++ +...+|+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-----~-----~-d~~~~~~l~~~l~~~gV~i-~~~~~v~~i 239 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-----N-----E-DAEVSKEIAKQYKKLGVKI-LTGTKVESI 239 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-----c-----c-CHHHHHHHHHHHHHCCCEE-EECCEEEEE
Confidence 57999999999999999999999999999998764321 1 1 1234556777888888665 346788888
Q ss_pred ecCCCEEE--EeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKKQIY--CRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~~v~--~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+.+++.+. +...+ + +..++++|.||+|+|..|+..
T Consensus 240 ~~~~~~~~v~~~~~~-----g-~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 240 DDNGSKVTVTVSKKD-----G-KAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEeCCeEEEEEEecC-----C-CeEEEEeCEEEECcCcccCCC
Confidence 77655443 32111 1 123799999999999998764
No 191
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.07 E-value=6.1e-05 Score=80.29 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=32.7
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYF 92 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~ 92 (584)
.+|+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 68999999999999999999999999999998653
No 192
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.06 E-value=2e-05 Score=83.32 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=31.4
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
||+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 699999999999999999999999999999864
No 193
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.06 E-value=2.3e-05 Score=83.26 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=32.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
..+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 35799999999999999999999999999999875
No 194
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.05 E-value=4.1e-06 Score=65.13 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=31.4
Q ss_pred EECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC
Q 045826 62 VLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 62 IVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p 96 (584)
|||||++||++|+.|++.|++|+|+|+++..++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcce
Confidence 89999999999999999999999999999877653
No 195
>PLN02507 glutathione reductase
Probab=98.05 E-value=2.7e-05 Score=85.32 Aligned_cols=102 Identities=17% Similarity=0.240 Sum_probs=75.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
.++|+|||||+.|+.+|..|+..|.+|+|+++.+...- .. ..++...+.+.+++.++++ +...+|..+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~----------~~-d~~~~~~l~~~l~~~GI~i-~~~~~V~~i 270 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR----------GF-DDEMRAVVARNLEGRGINL-HPRTNLTQL 270 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc----------cc-CHHHHHHHHHHHHhCCCEE-EeCCEEEEE
Confidence 57999999999999999999999999999998764211 11 2245566777888888665 346678888
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+.+++.+.+....+ .++++|.+++|+|.+|+...
T Consensus 271 ~~~~~~~~v~~~~g--------~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 271 TKTEGGIKVITDHG--------EEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EEeCCeEEEEECCC--------cEEEcCEEEEeecCCCCCCC
Confidence 76544444443221 27999999999999988653
No 196
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.05 E-value=2.7e-05 Score=84.68 Aligned_cols=102 Identities=18% Similarity=0.325 Sum_probs=74.1
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||+|+.|+.+|..|++.|.+|++|++.+..... . ..++...+.+.+++.++++ +...++..+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~----------~-d~~~~~~l~~~L~~~gV~i-~~~~~v~~v 244 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG----------E-DADAAEVLEEVFARRGMTV-LKRSRAESV 244 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC----------C-CHHHHHHHHHHHHHCCcEE-EcCCEEEEE
Confidence 468999999999999999999999999999987643221 1 1234556778888888554 235678888
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+.+...+.+....+ .++++|.+++|+|..|+...
T Consensus 245 ~~~~~~~~v~~~~g--------~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 245 ERTGDGVVVTLTDG--------RTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEeCCEEEEEECCC--------cEEEecEEEEeecCCcCCCC
Confidence 75544444432211 27999999999999988653
No 197
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.04 E-value=1.6e-05 Score=84.62 Aligned_cols=98 Identities=16% Similarity=0.275 Sum_probs=77.6
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
.++|+|||+|+.|+.+|..|++.|++|+++|+.++.+..... ..+...+.+.++.+++++ .....+..|
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~----------~~~~~~~~~~l~~~gi~~-~~~~~~~~i 204 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD----------PEVAEELAELLEKYGVEL-LLGTKVVGV 204 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh----------HHHHHHHHHHHHHCCcEE-EeCCceEEE
Confidence 479999999999999999999999999999999876664322 355677888999998444 257778899
Q ss_pred ecCCCEEE-----EeecCccCCCCCceEEEeCCEEEEccCCCCC
Q 045826 137 DAEKKQIY-----CRTTEDRTCGGKEEFALDYDILVIAMGAQAN 175 (584)
Q Consensus 137 d~~~~~v~-----~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~ 175 (584)
+...+.+. ...+ ..+++|.+++++|.+|+
T Consensus 205 ~~~~~~~~~~~~~~~~~----------~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 205 EGKGNTLVVERVVGIDG----------EEIKADLVIIGPGERPN 238 (415)
T ss_pred EcccCcceeeEEEEeCC----------cEEEeeEEEEeeccccc
Confidence 88766432 2222 28999999999999985
No 198
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.04 E-value=2.9e-05 Score=84.45 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=74.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYK 135 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~ 135 (584)
.+++|+|||||+.|+.+|..|++.|.+|+|||+.+...- . . ..++...+.+.+++.++++ +...+|..
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-----~-----~-d~~~~~~l~~~l~~~gV~i-~~~~~V~~ 240 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-----G-----T-DTETAKTLQKALTKQGMKF-KLGSKVTG 240 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-----C-----C-CHHHHHHHHHHHHhcCCEE-EECcEEEE
Confidence 358999999999999999999999999999998765321 1 1 1234556777888888655 33667888
Q ss_pred EecCCCEEE--EeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 136 IDAEKKQIY--CRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 136 id~~~~~v~--~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+..+++.+. +.... +.....+++|.|++|+|..|+..
T Consensus 241 i~~~~~~v~v~~~~~~-----~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 241 ATAGADGVSLTLEPAA-----GGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EEEcCCeEEEEEEEcC-----CCceeEEEeCEEEEccCCccccc
Confidence 876544443 32211 01123799999999999998754
No 199
>PRK09126 hypothetical protein; Provisional
Probab=98.03 E-value=2.9e-05 Score=82.42 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=33.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
...+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 357999999999999999999999999999999864
No 200
>PRK11445 putative oxidoreductase; Provisional
Probab=98.02 E-value=3.6e-05 Score=80.56 Aligned_cols=34 Identities=21% Similarity=0.463 Sum_probs=31.4
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
++||+|||||+||+++|..|++. ++|+|+|+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 47999999999999999999988 99999998864
No 201
>PLN02612 phytoene desaturase
Probab=98.01 E-value=0.00035 Score=77.74 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=38.3
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC
Q 045826 54 EFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 54 ~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p 96 (584)
...+++|+|||||++||++|++|.+.|++|+|+|++++.++..
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKV 132 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcc
Confidence 4456799999999999999999999999999999998877754
No 202
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.01 E-value=2.5e-05 Score=84.47 Aligned_cols=100 Identities=24% Similarity=0.309 Sum_probs=72.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|+..|.+|+||++.+...- . . ..++...+.+.+++.++++ +....++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-----~-----~-d~~~~~~~~~~l~~~gI~i-~~~~~v~~i 233 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-----S-----F-DSMISETITEEYEKEGINV-HKLSKPVKV 233 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-----c-----c-CHHHHHHHHHHHHHcCCEE-EcCCEEEEE
Confidence 57999999999999999999999999999998865321 1 1 2245566777888888665 235678888
Q ss_pred ecCCC---EEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKK---QIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~---~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+.+.. .+.+.++ +..+.+|.+++|+|..|+..
T Consensus 234 ~~~~~~~~~v~~~~g---------~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 234 EKTVEGKLVIHFEDG---------KSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred EEeCCceEEEEECCC---------cEEEEcCEEEEeeCCCcCcc
Confidence 75432 2333222 12799999999999998865
No 203
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.00 E-value=4.7e-06 Score=78.51 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=42.2
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKG 123 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g 123 (584)
..||+||||||+||+||++|++.|++|++||++...++....-..... .--+..+...+++..+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~---~iVVq~~a~~iL~elg 80 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFN---KIVVQEEADEILDELG 80 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT------EEEETTTHHHHHHHT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccc---hhhhhhhHHHHHHhCC
Confidence 579999999999999999999999999999999877654322111111 1123445567777777
No 204
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.00 E-value=4.1e-05 Score=82.91 Aligned_cols=101 Identities=16% Similarity=0.272 Sum_probs=71.4
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- . . ..++...+.++++ .++++ +...+|..+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-----~-----~-d~~~~~~l~~~~~-~gI~i-~~~~~V~~i 235 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-----H-----L-DEDISDRFTEIAK-KKWDI-RLGRNVTAV 235 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-----c-----c-CHHHHHHHHHHHh-cCCEE-EeCCEEEEE
Confidence 57999999999999999999999999999998875321 1 1 1233344555443 45554 346788888
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+.+++.+.+....+ .++++|.+++|+|.+|+...
T Consensus 236 ~~~~~~v~v~~~~g--------~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 236 EQDGDGVTLTLDDG--------STVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEcCCeEEEEEcCC--------CEEEcCEEEEeeccCcCCCC
Confidence 87655554432211 17999999999999987654
No 205
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.00 E-value=5.1e-05 Score=82.45 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=31.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
++||||||||.|||+||..+++.|.+|+||||.+
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4799999999999999999999999999999964
No 206
>PRK13748 putative mercuric reductase; Provisional
Probab=97.99 E-value=3.6e-05 Score=85.85 Aligned_cols=99 Identities=15% Similarity=0.247 Sum_probs=73.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+||++... ++. . ..++...+.+.+++.|+++ +.+..+..+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~------l~~-----~-d~~~~~~l~~~l~~~gI~i-~~~~~v~~i 336 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTL------FFR-----E-DPAIGEAVTAAFRAEGIEV-LEHTQASQV 336 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc------ccc-----c-CHHHHHHHHHHHHHCCCEE-EcCCEEEEE
Confidence 57999999999999999999999999999997531 111 1 1245566778888888665 346788888
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+.++..+.+.... .++.+|.+++|+|..|+..
T Consensus 337 ~~~~~~~~v~~~~---------~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 337 AHVDGEFVLTTGH---------GELRADKLLVATGRAPNTR 368 (561)
T ss_pred EecCCEEEEEecC---------CeEEeCEEEEccCCCcCCC
Confidence 7665555544321 1699999999999998865
No 207
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.99 E-value=4e-05 Score=81.43 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=31.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcccC---CCeEEEEcCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSN---SFEVQVVSPR 89 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~---g~~V~lid~~ 89 (584)
.+.+|+|||||+||+++|..|++. |++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 467999999999999999999987 9999999994
No 208
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.99 E-value=0.00018 Score=78.27 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=34.5
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~ 95 (584)
+|+|||||++|+++|..|.+.|++|+|+|+++..++.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCce
Confidence 5899999999999999999999999999999988764
No 209
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.99 E-value=0.00019 Score=71.31 Aligned_cols=135 Identities=19% Similarity=0.214 Sum_probs=85.2
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc------------------------------
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN------------------------------ 273 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~------------------------------ 273 (584)
.|+|||+|++|+-+|..+++.+ .+|.++++.+.+..
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G--------------~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~ 88 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNG--------------LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYE 88 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCee
Confidence 8999999999999999998754 67777776643310
Q ss_pred --------cccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CC-----eEEEEeC---CCC---eEEEEecceEEEccCC
Q 045826 274 --------MFDKRITASAEEKFKRDGIDLKTGSMVVKLS--DK-----EISTKDR---ATG---QISSIPYGMVVWSTGI 332 (584)
Q Consensus 274 --------~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~-----~v~~~~~---~~G---~~~~i~~D~vI~a~G~ 332 (584)
....++.+.+.+.+.+.|++++.++.+.++. ++ ++++... .+| +..+++++.||.|||.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 0123445566667788899999999999874 33 2332210 011 2346999999999995
Q ss_pred CCCchHHHHHHHhCCc--C-----CC--------ceeeCCCCccCCCCCEEEeCcccc
Q 045826 333 GTRPVIMDFMKQIGQA--N-----RR--------VLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 333 ~~~p~~~~l~~~~~l~--~-----~g--------~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
. .++...+.+..++. . .+ ...|+.+-++ +|++|++|=.+.
T Consensus 169 ~-a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~ 223 (254)
T TIGR00292 169 D-AEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVA 223 (254)
T ss_pred C-chHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcc--cCCEEEechhhh
Confidence 2 23343344444331 1 01 1223333333 899999998876
No 210
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.99 E-value=5.7e-05 Score=80.20 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=32.9
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
+++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47899999999999999999999999999999874
No 211
>PRK14727 putative mercuric reductase; Provisional
Probab=97.98 E-value=4.3e-05 Score=83.39 Aligned_cols=100 Identities=14% Similarity=0.233 Sum_probs=73.1
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+||++.. .. +. . ..++...+.+.+++.++++ +...+|..+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l-----~~-----~-d~~~~~~l~~~L~~~GV~i-~~~~~V~~i 254 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LL-----FR-----E-DPLLGETLTACFEKEGIEV-LNNTQASLV 254 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-CC-----Cc-----c-hHHHHHHHHHHHHhCCCEE-EcCcEEEEE
Confidence 4799999999999999999999999999998742 11 11 1 1234566777888888654 235678888
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+.++..+.+.... .++.+|.+|+|+|..|+...
T Consensus 255 ~~~~~~~~v~~~~---------g~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 255 EHDDNGFVLTTGH---------GELRAEKLLISTGRHANTHD 287 (479)
T ss_pred EEeCCEEEEEEcC---------CeEEeCEEEEccCCCCCccC
Confidence 7655555554322 16889999999999987653
No 212
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.98 E-value=4.3e-05 Score=81.33 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=31.6
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
.||+||||||||++||..|++.|++|+|+|++..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4899999999999999999999999999998754
No 213
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.98 E-value=2.8e-05 Score=82.23 Aligned_cols=33 Identities=15% Similarity=0.385 Sum_probs=31.1
Q ss_pred eEEEECCcHHHHHHHHhcccCC-CeEEEEcCCCC
Q 045826 59 KVVVLGTGWAGTTFLKILKSNS-FEVQVVSPRNY 91 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g-~~V~lid~~~~ 91 (584)
||+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 6999999999999999999999 99999998754
No 214
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.97 E-value=0.00029 Score=79.37 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=33.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYF 92 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~ 92 (584)
...||||||||.|||+||..+++.|.+|+|||++...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3569999999999999999999999999999986543
No 215
>PRK05868 hypothetical protein; Validated
Probab=97.96 E-value=6.4e-05 Score=79.30 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYF 92 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~ 92 (584)
|++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 579999999999999999999999999999988653
No 216
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.95 E-value=0.00034 Score=69.85 Aligned_cols=81 Identities=14% Similarity=0.291 Sum_probs=55.0
Q ss_pred HhHhhhCcC-CC-CCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc----CCeEEEEeCCCCeEEE
Q 045826 247 DDLSKLYPS-LK-EFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS----DKEISTKDRATGQISS 320 (584)
Q Consensus 247 ~~~~~~~~~-~~-~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~----~~~v~~~~~~~G~~~~ 320 (584)
+.+.+.||. .+ ++-.+-+++....+.. .....+.++..+++.|+.|+.+..++.++ ++..+...+.+|..
T Consensus 123 eEvrk~fP~~~~l~d~~~G~~n~~gGvi~--a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~-- 198 (399)
T KOG2820|consen 123 EEVRKRFPSNIPLPDGWQGVVNESGGVIN--AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSI-- 198 (399)
T ss_pred HHHHHhCCCCccCCcchhhcccccccEee--HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCe--
Confidence 456778883 32 3444555544433322 35566778889999999999999999886 44333333345775
Q ss_pred EecceEEEccC
Q 045826 321 IPYGMVVWSTG 331 (584)
Q Consensus 321 i~~D~vI~a~G 331 (584)
..++.+|+++|
T Consensus 199 Y~akkiI~t~G 209 (399)
T KOG2820|consen 199 YHAKKIIFTVG 209 (399)
T ss_pred eecceEEEEec
Confidence 88999999999
No 217
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.95 E-value=8.3e-05 Score=81.67 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=34.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAF 94 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~ 94 (584)
...||||||+|.||++||..+++.|.+|+||||.+..++
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 357999999999999999999999999999999876543
No 218
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.94 E-value=0.00014 Score=78.48 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=30.6
Q ss_pred CeEEEECCcHHHHHHHHhccc----CCCeEEEEcCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKS----NSFEVQVVSPRN 90 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~----~g~~V~lid~~~ 90 (584)
+||+|||||++|+++|..|++ .|++|+|||+++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 489999999999999999997 799999999964
No 219
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.94 E-value=6.3e-06 Score=88.53 Aligned_cols=106 Identities=14% Similarity=0.228 Sum_probs=31.7
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccc---c---------cc----------------------
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSV---T---------NG---------------------- 104 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~---~---------~g---------------------- 104 (584)
||||||||+||++||..+++.|.+|+|||+.+.+++....... . .+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 7999999999999999999999999999999987764211000 0 00
Q ss_pred -----ccCcccccHHHHHHHHHcCCcEEEEEEEEEEEecCCCEE---EEeecCccCCCCCceEEEeCCEEEEccCC
Q 045826 105 -----TVEARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQI---YCRTTEDRTCGGKEEFALDYDILVIAMGA 172 (584)
Q Consensus 105 -----~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~v---~~~~~~~~~~~~~~~~~i~yD~LVlAtGs 172 (584)
..++.....-+.+++.+.++++ +.+..|.++..+++.| .+.+.. +..++.++.+|-|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v-~~~t~v~~v~~~~~~i~~V~~~~~~-------g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV-LLGTRVVDVIRDGGRITGVIVETKS-------GRKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-ccccccccccccccccccccccccc-------cccccccccccccccc
Confidence 0111111222455555666555 4567777777766433 232211 1348999999999994
No 220
>PRK06753 hypothetical protein; Provisional
Probab=97.93 E-value=2.8e-05 Score=81.98 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=31.9
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
.+|+|||||++|+++|..|++.|++|+|+|+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3799999999999999999999999999998865
No 221
>PLN02985 squalene monooxygenase
Probab=97.92 E-value=9.7e-05 Score=81.07 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=33.6
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 54 EFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 54 ~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
.+..+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3456799999999999999999999999999999874
No 222
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.92 E-value=0.00012 Score=78.86 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEcCC----eEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhC-----
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLSDK----EISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIG----- 346 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~----~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~----- 346 (584)
+..+.-.......++|-++++.++|+.+..+ +|.+.+..+|++.++.++.||-|+| |+...+++..+
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaG----pW~d~i~~~~~~~~~~ 238 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAG----PWVDEILEMAGLEQSP 238 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCC----ccHHHHHHhhcccCCC
Confidence 3566666677788899999999999998533 3777777778888899999999999 55656655542
Q ss_pred ---C-cCCC-ceeeCCCC
Q 045826 347 ---Q-ANRR-VLATDEWL 359 (584)
Q Consensus 347 ---l-~~~g-~i~Vd~~l 359 (584)
+ ..+| .|.|+..+
T Consensus 239 ~~~vr~skGsHlVv~~~~ 256 (532)
T COG0578 239 HIGVRPSKGSHLVVDKKF 256 (532)
T ss_pred CccceeccceEEEecccC
Confidence 2 2345 56677633
No 223
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.92 E-value=0.0004 Score=72.16 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=61.3
Q ss_pred ccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhC
Q 045826 269 DHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIG 346 (584)
Q Consensus 269 ~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~ 346 (584)
+++...--+.+.+.+.+.|+++|++++++++|..++ ++.+....+.+|++ +++|.||+|+|-....+...+.++.|
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~--i~~~~vvlA~Grsg~dw~~~l~~K~G 242 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEE--IEADYVVLAPGRSGRDWFEMLHKKLG 242 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcE--EecCEEEEccCcchHHHHHHHHHhcC
Confidence 444445567888999999999999999999998874 44344444455875 99999999999888888888888877
Q ss_pred C
Q 045826 347 Q 347 (584)
Q Consensus 347 l 347 (584)
+
T Consensus 243 v 243 (486)
T COG2509 243 V 243 (486)
T ss_pred c
Confidence 7
No 224
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.92 E-value=0.00037 Score=75.91 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=32.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
..||||||+|.||+++|..+++.|.+|+||||.+.
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 47999999999999999999999999999999873
No 225
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.91 E-value=0.0005 Score=77.21 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCe----EEEEeCCCCeEEEEecceEEEccCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLS--DKE----ISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~----v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
...+...+.+.+++.||+++.++.++++. +++ +...+..+|+...+.++.||+|||-
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 45666777787888999999999999953 332 3333445677667899999999983
No 226
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.91 E-value=0.00022 Score=75.42 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=33.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
.+++|||||||++|+++|++|++.|.+|+|+|+..-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 468999999999999999999999999999998864
No 227
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.90 E-value=6.2e-05 Score=81.96 Aligned_cols=103 Identities=21% Similarity=0.327 Sum_probs=72.2
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|.+.|.+|+||++.+.+.- . . ..++...+.+.+++. +++ .....|+.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~-----~-----~-d~~~~~~~~~~l~~~-v~i-~~~~~v~~i 240 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP-----A-----A-DKDIVKVFTKRIKKQ-FNI-MLETKVTAV 240 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC-----c-----C-CHHHHHHHHHHHhhc-eEE-EcCCEEEEE
Confidence 47999999999999999999999999999998875321 1 1 123444556666655 555 346778888
Q ss_pred ecCCCEEEEe--ecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQIYCR--TTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~v~~~--~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
......+.+. ++.+ +..++++|.+|+|+|.+|+...
T Consensus 241 ~~~~~~~~v~~~~~~~------~~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 241 EAKEDGIYVTMEGKKA------PAEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred EEcCCEEEEEEEeCCC------cceEEEeCEEEEeecccccCCc
Confidence 7554444432 2211 1237999999999999988653
No 228
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.90 E-value=0.00059 Score=75.59 Aligned_cols=38 Identities=29% Similarity=0.269 Sum_probs=34.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFA 93 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~ 93 (584)
...||||||+|.||++||..+++.|.+|+||||.+...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~ 52 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD 52 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence 45799999999999999999999999999999987543
No 229
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.90 E-value=5.9e-05 Score=82.22 Aligned_cols=100 Identities=17% Similarity=0.344 Sum_probs=71.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcc---cCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILK---SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAE 132 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~---~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~ 132 (584)
.+++|+|||||+.|+.+|..+. ..|.+|+||++.+...- . . ..++...+.+.+++.++++ +....
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-----~-----~-d~~~~~~l~~~L~~~GI~i-~~~~~ 253 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-----G-----F-DSTLRKELTKQLRANGINI-MTNEN 253 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-----c-----c-CHHHHHHHHHHHHHcCCEE-EcCCE
Confidence 3579999999999999997654 45899999998875321 1 1 2355667788888888665 33567
Q ss_pred EEEEecCC-C--EEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 133 CYKIDAEK-K--QIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 133 v~~id~~~-~--~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+..+..+. . .+.+.++. ++++|.+++|+|..|+..
T Consensus 254 v~~i~~~~~~~~~v~~~~g~----------~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 254 PAKVTLNADGSKHVTFESGK----------TLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred EEEEEEcCCceEEEEEcCCC----------EEEcCEEEEeeCCCcCcc
Confidence 88886542 2 34333221 799999999999998765
No 230
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.88 E-value=0.00017 Score=75.24 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=50.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCccc------ccHHHHHHHHHcCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARS------IVEPIRNIVRKKGM 124 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~------i~~~~~~~~~~~g~ 124 (584)
....+|+|||+|++||++|+.|.+.|++|+|+|.++++++....-.. .+...... ....+..+++.+|+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~~gv 79 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHDALLAYAKEFGV 79 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccchhhhhhHHhcCC
Confidence 45679999999999999999999999999999999999987544333 21111100 23445666677764
No 231
>PRK07045 putative monooxygenase; Reviewed
Probab=97.88 E-value=7.5e-05 Score=79.25 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=33.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYF 92 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~ 92 (584)
.+.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4579999999999999999999999999999988754
No 232
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.87 E-value=7.8e-05 Score=81.76 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=31.4
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
+||+|||||+||+.+|..+++.|.+|+|||++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccc
Confidence 4899999999999999999999999999998743
No 233
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.87 E-value=7.2e-05 Score=80.33 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=70.5
Q ss_pred CeEEEECCcHHHHHHHHhccc--------------CCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcC
Q 045826 58 KKVVVLGTGWAGTTFLKILKS--------------NSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKG 123 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~--------------~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g 123 (584)
++|+|||||+.|+.+|..|+. .+.+|+||++.+.... . . ...+...+.+.+++.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-----~-----~-~~~~~~~~~~~L~~~g 242 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-----S-----F-DQALRKYGQRRLRRLG 242 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-----c-----C-CHHHHHHHHHHHHHCC
Confidence 489999999999999998873 4789999998865321 1 1 1245566778888898
Q ss_pred CcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCC
Q 045826 124 MDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQAN 175 (584)
Q Consensus 124 ~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~ 175 (584)
+++ +....|..++.+ .|.+.++. ++++|.+|+++|..|+
T Consensus 243 V~v-~~~~~v~~v~~~--~v~~~~g~----------~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 243 VDI-RTKTAVKEVLDK--EVVLKDGE----------VIPTGLVVWSTGVGPG 281 (424)
T ss_pred CEE-EeCCeEEEEeCC--EEEECCCC----------EEEccEEEEccCCCCc
Confidence 655 237788888754 56665543 8999999999998775
No 234
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.87 E-value=9.4e-05 Score=81.07 Aligned_cols=101 Identities=16% Similarity=0.247 Sum_probs=69.7
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|+..|.+|+||++.. . . +. . ..++...+.+.+++.++++ +....+..+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~-l----~~-----~-d~~~~~~l~~~l~~~GV~i-~~~~~v~~v 248 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-P-L----RG-----F-DRQCSEKVVEYMKEQGTLF-LEGVVPINI 248 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-c-c----cc-----C-CHHHHHHHHHHHHHcCCEE-EcCCeEEEE
Confidence 4689999999999999999999999999998632 1 1 11 1 1234566778888888554 234556666
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
...+..+.+.... + ..+.+|.+++|+|..|+...
T Consensus 249 ~~~~~~~~v~~~~-----g---~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 249 EKMDDKIKVLFSD-----G---TTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred EEcCCeEEEEECC-----C---CEEEcCEEEEeeCCCCCccc
Confidence 6543333332211 1 16899999999999988653
No 235
>PTZ00058 glutathione reductase; Provisional
Probab=97.87 E-value=0.0001 Score=81.47 Aligned_cols=102 Identities=17% Similarity=0.334 Sum_probs=73.2
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|+..|.+|+|+++.+.+.- . . ..++...+.+.+++.|+++ +....+..|
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~-----~-----~-d~~i~~~l~~~L~~~GV~i-~~~~~V~~I 304 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR-----K-----F-DETIINELENDMKKNNINI-ITHANVEEI 304 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc-----c-----C-CHHHHHHHHHHHHHCCCEE-EeCCEEEEE
Confidence 67999999999999999999999999999998864221 1 1 1244566777888888665 346678888
Q ss_pred ecCCC-EEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKK-QIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~-~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+.+.. .+.+.... + ...+++|.|++|+|..|+..
T Consensus 305 ~~~~~~~v~v~~~~-----~--~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 305 EKVKEKNLTIYLSD-----G--RKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EecCCCcEEEEECC-----C--CEEEECCEEEECcCCCCCcc
Confidence 76432 23322111 1 13799999999999988754
No 236
>PRK06185 hypothetical protein; Provisional
Probab=97.86 E-value=8.3e-05 Score=79.40 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=33.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
..+||+|||||++|+++|..|++.|++|+|||+++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 457999999999999999999999999999998753
No 237
>PLN02661 Putative thiazole synthesis
Probab=97.86 E-value=0.00016 Score=74.22 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=34.0
Q ss_pred CCCeEEEECCcHHHHHHHHhccc-CCCeEEEEcCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKS-NSFEVQVVSPRNYFAF 94 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~-~g~~V~lid~~~~~~~ 94 (584)
...||+|||||++|+.+|+.|++ .|++|+|||++...++
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 35799999999999999999985 4899999999876644
No 238
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.85 E-value=6.5e-05 Score=81.63 Aligned_cols=104 Identities=18% Similarity=0.238 Sum_probs=73.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYK 135 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~ 135 (584)
.+++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.- . ...++...+.+.+++. +++ +...++..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~----------~-~d~~~~~~~~~~l~~~-I~i-~~~~~v~~ 234 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP----------L-EDPEVSKQAQKILSKE-FKI-KLGAKVTS 234 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc----------c-hhHHHHHHHHHHHhhc-cEE-EcCCEEEE
Confidence 357999999999999999999999999999999875321 0 1124455566677766 665 34677888
Q ss_pred EecCCC-EEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 136 IDAEKK-QIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 136 id~~~~-~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
++..++ .+.+.... + +..++++|.+++|+|..|+...
T Consensus 235 i~~~~~~~v~~~~~~-----~-~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 235 VEKSGDEKVEELEKG-----G-KTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred EEEcCCceEEEEEcC-----C-ceEEEEeCEEEEccCCccCCCC
Confidence 876543 45442111 1 1237999999999999988663
No 239
>PRK10262 thioredoxin reductase; Provisional
Probab=97.84 E-value=0.0001 Score=76.05 Aligned_cols=104 Identities=19% Similarity=0.282 Sum_probs=72.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYK 135 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~ 135 (584)
..++|+|||+|+.|+.+|..|++.+.+|+++++.+.+... ..+...+.+.++..++++ +....+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~-------------~~~~~~~~~~l~~~gV~i-~~~~~v~~ 210 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAE-------------KILIKRLMDKVENGNIIL-HTNRTLEE 210 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCC-------------HHHHHHHHhhccCCCeEE-EeCCEEEE
Confidence 3579999999999999999999999999999998643210 122344566666777443 23577888
Q ss_pred EecCCC---EEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 136 IDAEKK---QIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 136 id~~~~---~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
++.+.. .|.+.+... +.+..++++|.||+++|..|+..
T Consensus 211 v~~~~~~~~~v~~~~~~~----~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 211 VTGDQMGVTGVRLRDTQN----SDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EEcCCccEEEEEEEEcCC----CCeEEEEECCEEEEEeCCccChh
Confidence 876643 355544321 11124799999999999988754
No 240
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.84 E-value=6.6e-05 Score=86.81 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=71.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
.+++||||||+.|+.+|..|++.|.+|+||++.+.+.. ..+ .......+.+.+++.|+++ +....+..|
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~---------~~l-d~~~~~~l~~~L~~~GV~v-~~~~~v~~I 213 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA---------EQL-DQMGGEQLRRKIESMGVRV-HTSKNTLEI 213 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh---------hhc-CHHHHHHHHHHHHHCCCEE-EcCCeEEEE
Confidence 46899999999999999999999999999998764221 011 1233455778888888665 345678888
Q ss_pred ecCC--C--EEEEeecCccCCCCCceEEEeCCEEEEccCCCCCC
Q 045826 137 DAEK--K--QIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANT 176 (584)
Q Consensus 137 d~~~--~--~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~ 176 (584)
..+. . .+.+.++. ++++|.+|+|+|.+|+.
T Consensus 214 ~~~~~~~~~~v~~~dG~----------~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 214 VQEGVEARKTMRFADGS----------ELEVDFIVFSTGIRPQD 247 (847)
T ss_pred EecCCCceEEEEECCCC----------EEEcCEEEECCCcccCc
Confidence 6532 2 23333332 89999999999999875
No 241
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.84 E-value=0.00011 Score=81.13 Aligned_cols=96 Identities=23% Similarity=0.281 Sum_probs=72.2
Q ss_pred cceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCC--ccc--------cc----cccHHHHHHHHHHH
Q 045826 222 ILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAG--DHI--------LN----MFDKRITASAEEKF 287 (584)
Q Consensus 222 ~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~i--------l~----~~~~~~~~~~~~~L 287 (584)
...|+|||||+.|+.+|..+++.+ .+|++++.. ..+ ++ ...+++.+.+.+.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 276 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKG--------------IRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHV 276 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999865 677777542 111 11 13467888889999
Q ss_pred HhCCcEEEeCCceeEEcCC--eEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 288 KRDGIDLKTGSMVVKLSDK--EISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 288 ~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
++.|++++++++|+.++.+ ...+.. .+|+. +.+|.||+|+|..+
T Consensus 277 ~~~gv~i~~~~~V~~I~~~~~~~~V~~-~~g~~--i~a~~vViAtG~~~ 322 (517)
T PRK15317 277 KEYDVDIMNLQRASKLEPAAGLIEVEL-ANGAV--LKAKTVILATGARW 322 (517)
T ss_pred HHCCCEEEcCCEEEEEEecCCeEEEEE-CCCCE--EEcCEEEECCCCCc
Confidence 9999999999999999654 333332 34654 89999999999643
No 242
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=0.00066 Score=75.93 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=34.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFA 93 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~ 93 (584)
.+.||||||+|.||++||..+++.|.+|+||||.+...
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 35699999999999999999999999999999987543
No 243
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.83 E-value=0.0001 Score=80.41 Aligned_cols=101 Identities=14% Similarity=0.289 Sum_probs=70.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
+++|+|||||+.|+.+|..|++.|.+|+|+++. .. . +. . ..++...+.+.+++.|+++. ....+..+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~-l----~~-----~-d~~~~~~l~~~L~~~gV~i~-~~~~v~~v 246 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL-L----RG-----F-DQDCANKVGEHMEEHGVKFK-RQFVPIKV 246 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cc-c----cc-----c-CHHHHHHHHHHHHHcCCEEE-eCceEEEE
Confidence 468999999999999999999999999999863 21 1 11 1 12445567778888886652 34556666
Q ss_pred ecCCCEE--EEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKKQI--YCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~~v--~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
...+..+ .+.++. +..++++|.+++|+|..|+..
T Consensus 247 ~~~~~~~~v~~~~~~-------~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 247 EQIEAKVKVTFTDST-------NGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred EEcCCeEEEEEecCC-------cceEEEeCEEEEEecCCcCCC
Confidence 6544333 333221 012799999999999998765
No 244
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.83 E-value=7.6e-05 Score=79.71 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=31.4
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPR 89 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~ 89 (584)
.+||+|||||++|+++|..|++.|++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 579999999999999999999999999999986
No 245
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.82 E-value=7.7e-05 Score=78.75 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=31.1
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPR 89 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~ 89 (584)
+.||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 468999999999999999999999999999976
No 246
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.82 E-value=0.00081 Score=75.23 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEc--C-Ce---EEEEeCCCCeEEEEecceEEEccCCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLS--D-KE---ISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~-~~---v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
...+...+.+...+.||+++.++.++++. + +. +.+.+..+|+...+.++.||+|||-.
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA 210 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence 34566667777788999999999999873 2 22 33434445765678899999999953
No 247
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.82 E-value=0.0001 Score=85.07 Aligned_cols=100 Identities=21% Similarity=0.278 Sum_probs=72.1
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
.++|||||||+.|+.+|..|++.|.+|+||++.+.... ..+ .......+.+.+++.|+++. ....++.+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~---------~~l-d~~~~~~l~~~l~~~GV~v~-~~~~v~~i 208 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA---------KQL-DQTAGRLLQRELEQKGLTFL-LEKDTVEI 208 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh---------hhc-CHHHHHHHHHHHHHcCCEEE-eCCceEEE
Confidence 47899999999999999999999999999998764211 011 11334556777888886653 35567777
Q ss_pred ecCCCE--EEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 137 DAEKKQ--IYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 137 d~~~~~--v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
..+.+. |.+.++. .+++|.+|+|+|.+|+..
T Consensus 209 ~~~~~~~~v~~~dG~----------~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 209 VGATKADRIRFKDGS----------SLEADLIVMAAGIRPNDE 241 (785)
T ss_pred EcCCceEEEEECCCC----------EEEcCEEEECCCCCcCcH
Confidence 655443 4444332 899999999999998754
No 248
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.81 E-value=0.00012 Score=80.63 Aligned_cols=97 Identities=23% Similarity=0.291 Sum_probs=72.3
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCC--cccc------------ccccHHHHHHHHH
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAG--DHIL------------NMFDKRITASAEE 285 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~il------------~~~~~~~~~~~~~ 285 (584)
....+|+|||||+.|+.+|..+++.+ .+|++++.. ..+. ....+++.+.+.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 275 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKG--------------LRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEE 275 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHH
Confidence 34568999999999999999999865 688887531 1111 1234677788888
Q ss_pred HHHhCCcEEEeCCceeEEcCC--eEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 286 KFKRDGIDLKTGSMVVKLSDK--EISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 286 ~L~~~GV~v~~~~~V~~v~~~--~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
.+++.||+++++++|++++.+ ...+.. .+|+. +.+|.+|+|+|..
T Consensus 276 ~l~~~gv~i~~~~~V~~I~~~~~~~~v~~-~~g~~--i~~d~lIlAtGa~ 322 (515)
T TIGR03140 276 HIKQYPIDLMENQRAKKIETEDGLIVVTL-ESGEV--LKAKSVIVATGAR 322 (515)
T ss_pred HHHHhCCeEEcCCEEEEEEecCCeEEEEE-CCCCE--EEeCEEEECCCCC
Confidence 999999999999999998543 344332 34654 9999999999954
No 249
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.81 E-value=0.0011 Score=74.47 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=32.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccC--CCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSN--SFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~--g~~V~lid~~~~ 91 (584)
..||||||||.||++||..+++. |.+|+||||.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 46999999999999999999987 999999999864
No 250
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.81 E-value=7.5e-05 Score=86.37 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=67.6
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-------cc--ccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-------NM--FDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~--~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||||++|+.+|..|++.+ .+|+++++.+.+. |. ++.+....-.+.+++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--------------~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--------------HPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 46789999999999999999999864 7999999887643 22 2445555666788889
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
||+|++++.+ .+ .+.. ... ..+|.||+|||...
T Consensus 603 GVe~~~gt~V-di-----~le~---L~~--~gYDaVILATGA~~ 635 (1019)
T PRK09853 603 GVKFEFGCSP-DL-----TVEQ---LKN--EGYDYVVVAIGADK 635 (1019)
T ss_pred CCEEEeCcee-EE-----Ehhh---hee--ccCCEEEECcCCCC
Confidence 9999999876 22 2221 332 66999999999643
No 251
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.80 E-value=0.00066 Score=75.87 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEc--CC-e---EEEEeCCCCeEEEEecceEEEccCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLS--DK-E---ISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~-~---v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
...+...+.+.+.+.||++++++.++++. ++ . +...+..+|+...+.++.||+|||-
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 45566677777778899999999999973 23 2 3333334577667889999999994
No 252
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.80 E-value=0.00071 Score=75.57 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCe---EEEEeCCCCeEEEEecceEEEccCCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLS--DKE---ISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~---v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
...+...+.+.+++.||+++.++.++++. ++. +...+..+|+...+.++.||+|||-.
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 35667777788888999999999999873 333 33333345765568999999999953
No 253
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.80 E-value=4.8e-05 Score=82.31 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=67.3
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-------c--cccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-------N--MFDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~L~~~ 290 (584)
...++|+|||+|+.|+++|..|++.+ .+|+++++.+.+. | .++.++.....+.+++.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 196 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAG--------------HSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKL 196 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhC
Confidence 45679999999999999999998754 7999999876552 2 24566777777888999
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
||++++++.+ ...+.+.+ .. ..+|.||+|+|.
T Consensus 197 gv~~~~~~~v----~~~v~~~~---~~---~~yd~viiAtGa 228 (449)
T TIGR01316 197 GVTFRMNFLV----GKTATLEE---LF---SQYDAVFIGTGA 228 (449)
T ss_pred CcEEEeCCcc----CCcCCHHH---HH---hhCCEEEEeCCC
Confidence 9999999854 12222221 22 568999999995
No 254
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.80 E-value=3.6e-05 Score=83.49 Aligned_cols=90 Identities=27% Similarity=0.381 Sum_probs=68.6
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-------cc--ccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-------NM--FDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~--~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||||+.|+++|..|++.+ .+|+++++.+.+. |. ++.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g--------------~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKG--------------YDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 45679999999999999999998753 7999999987753 22 3567777778889999
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
||++++++.+.. .+.+.+ .. +.+|.||+|||..
T Consensus 204 gv~~~~~~~v~~----~v~~~~---~~---~~~d~vvlAtGa~ 236 (457)
T PRK11749 204 GVEIRTNTEVGR----DITLDE---LR---AGYDAVFIGTGAG 236 (457)
T ss_pred CCEEEeCCEECC----ccCHHH---HH---hhCCEEEEccCCC
Confidence 999999987621 122211 22 6799999999963
No 255
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.80 E-value=0.00069 Score=75.65 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeE---EEEeCCCCeEEEEecceEEEccCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEI---STKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v---~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
...+...+.+.+++.||+++.++.++++. ++.+ ...+..+|+...+.++.||+|+|-
T Consensus 128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 128 GHALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 34566677777888899999999999984 3333 333334576556899999999994
No 256
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.80 E-value=4.7e-05 Score=79.60 Aligned_cols=98 Identities=15% Similarity=0.216 Sum_probs=74.4
Q ss_pred CCeEEEECCcHHHHHHHHhccc-------------CCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKS-------------NSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKG 123 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~-------------~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g 123 (584)
.-+|+|||||+.|+.+|-+|+. ...+|+|||+.+...- . .+.++....++.+++.|
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-----~------~~~~l~~~a~~~L~~~G 223 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-----M------FPPKLSKYAERALEKLG 223 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-----C------CCHHHHHHHHHHHHHCC
Confidence 4579999999999999988861 1248999999875332 1 13355667788999999
Q ss_pred CcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 124 MDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 124 ~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+++ ..+..|++|+++ .|++.+++ .+++++.+|-|+|.+++..
T Consensus 224 V~v-~l~~~Vt~v~~~--~v~~~~g~---------~~I~~~tvvWaaGv~a~~~ 265 (405)
T COG1252 224 VEV-LLGTPVTEVTPD--GVTLKDGE---------EEIPADTVVWAAGVRASPL 265 (405)
T ss_pred CEE-EcCCceEEECCC--cEEEccCC---------eeEecCEEEEcCCCcCChh
Confidence 887 458889999987 56666543 1599999999999987544
No 257
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.79 E-value=0.00086 Score=75.16 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEc--C-Ce---EEEEeCCCCeEEEEecceEEEccCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLS--D-KE---ISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~-~~---v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
...+...+.+.+++.||++++++.++++. + +. +...+..+|+...+.++.||+|||-
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 45667777788888999999999999973 2 22 3333344577667899999999994
No 258
>PRK06996 hypothetical protein; Provisional
Probab=97.78 E-value=0.00013 Score=77.79 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=31.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCC----CeEEEEcCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNS----FEVQVVSPRN 90 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g----~~V~lid~~~ 90 (584)
...++|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 34579999999999999999999876 5799999864
No 259
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.78 E-value=0.0002 Score=77.50 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=83.8
Q ss_pred cceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-----------------------------
Q 045826 222 ILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL----------------------------- 272 (584)
Q Consensus 222 ~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il----------------------------- 272 (584)
.++|+|||+|++|+-+|..+.+.+ .+|+++++.+.+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G--------------~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~ 75 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG--------------HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYE 75 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC--------------CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhh
Confidence 469999999999999999998754 5566665543221
Q ss_pred ----------------cc---------------ccHHHHHHHHHHHHhCCcE--EEeCCceeEEcCC--eEEEEeCC-CC
Q 045826 273 ----------------NM---------------FDKRITASAEEKFKRDGID--LKTGSMVVKLSDK--EISTKDRA-TG 316 (584)
Q Consensus 273 ----------------~~---------------~~~~~~~~~~~~L~~~GV~--v~~~~~V~~v~~~--~v~~~~~~-~G 316 (584)
|. -..++.+++++..++.|++ ++++++|++|+.. ...+.... ++
T Consensus 76 ~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~ 155 (461)
T PLN02172 76 SLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGG 155 (461)
T ss_pred hhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCC
Confidence 00 0145677788888888998 8999999999753 33333322 22
Q ss_pred eEEEEecceEEEccCCCCCchHHHHHHHhCCc-CCCceeeCCCCccC---CCCCEEEeCcccc
Q 045826 317 QISSIPYGMVVWSTGIGTRPVIMDFMKQIGQA-NRRVLATDEWLRVE---GCESVYALGDCAT 375 (584)
Q Consensus 317 ~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~-~~g~i~Vd~~l~~~---~~~~VfaiGD~a~ 375 (584)
...+..+|.||+|+|....|.+..+ -|+. -.|.+.--..++.+ ...+|-++|-...
T Consensus 156 ~~~~~~~d~VIvAtG~~~~P~~P~i---pG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~S 215 (461)
T PLN02172 156 FSKDEIFDAVVVCNGHYTEPNVAHI---PGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFAS 215 (461)
T ss_pred ceEEEEcCEEEEeccCCCCCcCCCC---CCcccCCceEEEecccCCccccCCCEEEEECCCcC
Confidence 3334679999999996544433222 1221 12322211223321 2356888886654
No 260
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.77 E-value=0.00012 Score=83.31 Aligned_cols=34 Identities=18% Similarity=0.412 Sum_probs=31.6
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
..+|+|||||.+|+++|++|++.|++|+|+|+..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3699999999999999999999999999999874
No 261
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.77 E-value=0.00074 Score=75.18 Aligned_cols=56 Identities=18% Similarity=0.066 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEEc--CCe---EEEEeCCCCeEEEEecceEEEccCC
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKLS--DKE---ISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~---v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
..+...+.+.+.+.||+++.++.++++. ++. +...+..+|+...+.++.||+|||-
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 4566667777777899999999999984 333 3444434566567899999999993
No 262
>PLN02815 L-aspartate oxidase
Probab=97.77 E-value=0.0011 Score=74.04 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=33.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAF 94 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~ 94 (584)
...||||||+|.|||+||..+++.| +|+||||.+....
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 3569999999999999999999989 9999999876444
No 263
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.77 E-value=7.5e-05 Score=78.50 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=66.3
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc--ccc---------cHHHHHHHHHHHHhCCc
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL--NMF---------DKRITASAEEKFKRDGI 292 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il--~~~---------~~~~~~~~~~~L~~~GV 292 (584)
+|||||||+.|+.+|..+.+.. .++.+|+|+++.+... +.+ ..++.....+.+++.||
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 5899999999999988875421 1458999999887632 111 12233334566778899
Q ss_pred EEEeCCceeEEcCCe--EEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 293 DLKTGSMVVKLSDKE--ISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 293 ~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
+++.+ +|++++.+. |.+. +|++ +.+|.+|+|+|..+
T Consensus 70 ~~~~~-~v~~id~~~~~V~~~---~g~~--~~yD~LviAtG~~~ 107 (364)
T TIGR03169 70 RFVIA-EATGIDPDRRKVLLA---NRPP--LSYDVLSLDVGSTT 107 (364)
T ss_pred EEEEE-EEEEEecccCEEEEC---CCCc--ccccEEEEccCCCC
Confidence 99886 799997554 4443 3665 99999999999544
No 264
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.76 E-value=0.001 Score=72.78 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHh-CCcEEEeCCceeEEc--CCeEE---EEeCCCCeEEEEecceEEEccCCCC
Q 045826 276 DKRITASAEEKFKR-DGIDLKTGSMVVKLS--DKEIS---TKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 276 ~~~~~~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v~---~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
...+.+.+.+.+++ .||+++.++.++++. ++.+. +.+. ++...+.++.||+|+|-..
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNR--ETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEEC--CcEEEEEcCEEEECCCccc
Confidence 35677777788887 699999999999984 33333 3331 3333589999999999533
No 265
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.76 E-value=8.2e-05 Score=79.70 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=31.5
Q ss_pred CeEEEECCcHHHHHHHHhcccCC-CeEEEEcCCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNS-FEVQVVSPRNYF 92 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g-~~V~lid~~~~~ 92 (584)
.+|+|||||++||++|..|++.| ++|+|+|+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 37999999999999999999887 699999998654
No 266
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.76 E-value=0.00017 Score=68.85 Aligned_cols=96 Identities=24% Similarity=0.325 Sum_probs=60.0
Q ss_pred EEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcE-EEEecCCccccc-------------------------------
Q 045826 226 VVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTR-ITLLEAGDHILN------------------------------- 273 (584)
Q Consensus 226 vVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~~il~------------------------------- 273 (584)
+|||+|++|+-+|..|.+.+ .+ |+++++.+.+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--------------~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--------------IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----------------EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhCC--------------CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 69999999999999998875 33 666655533210
Q ss_pred ------------cccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCCCCchH
Q 045826 274 ------------MFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIGTRPVI 338 (584)
Q Consensus 274 ------------~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~ 338 (584)
...+++.+++++..++.+++++++++|++++. ++..+.. .+++. +.||.||+|+|....|..
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~-~~~~~--~~a~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTT-RDGRT--IRADRVVLATGHYSHPRI 142 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEE-TTS-E--EEEEEEEE---SSCSB--
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEE-Eecce--eeeeeEEEeeeccCCCCc
Confidence 01234567788888999999999999999953 4444443 34644 889999999997556644
No 267
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.75 E-value=2.5e-05 Score=84.66 Aligned_cols=73 Identities=26% Similarity=0.383 Sum_probs=51.1
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccc-cC------cccccHHHHHHHHHcCCc
Q 045826 53 GEFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGT-VE------ARSIVEPIRNIVRKKGMD 125 (584)
Q Consensus 53 ~~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~-~~------~~~i~~~~~~~~~~~g~~ 125 (584)
....+++|+|||||.|||+||++|...|++|+|+|.++..++.........+. ++ ..-...++.-+.++.+++
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLE 90 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcc
Confidence 34567899999999999999999999999999999999988854322111111 11 111223666777777744
No 268
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.74 E-value=0.00036 Score=69.84 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=47.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccc---------cccccccCcccccH-HHHHHHHHcCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLP---------SVTNGTVEARSIVE-PIRNIVRKKGM 124 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~---------~~~~g~~~~~~i~~-~~~~~~~~~g~ 124 (584)
.+++|.|||+|++||+||+.|. .-++|||+|.+.+.++..... .+.+|-+-..+..+ .+..+++..|+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls-~rhdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv 84 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLS-RRHDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGV 84 (447)
T ss_pred CCcceEEEcccchhhhhHHhhh-cccceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCC
Confidence 4679999999999999999996 457999999999988875433 12222222223222 36677777773
No 269
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.73 E-value=0.00098 Score=75.06 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=32.6
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
..||||||||.||++||..+++.|.+|+||||.+.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 46999999999999999999999999999999864
No 270
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.73 E-value=6e-05 Score=88.04 Aligned_cols=91 Identities=23% Similarity=0.189 Sum_probs=69.8
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc---------cccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN---------MFDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~---------~~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||+||+|+.+|..|++.+ .+|+++++.+.+.. .++.++.+...+.+++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G--------------~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~ 369 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEG--------------FPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLL 369 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhh
Confidence 35889999999999999999999864 79999999876533 24566777777889999
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
||+|++++.+- ..+.+.+ ... ..+|.||+|+|..
T Consensus 370 Gv~f~~n~~vG----~dit~~~---l~~--~~yDAV~LAtGA~ 403 (944)
T PRK12779 370 GGRFVKNFVVG----KTATLED---LKA--AGFWKIFVGTGAG 403 (944)
T ss_pred cCeEEEeEEec----cEEeHHH---hcc--ccCCEEEEeCCCC
Confidence 99999997542 2233332 332 5799999999963
No 271
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.73 E-value=0.0011 Score=71.24 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=31.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFA 93 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~ 93 (584)
..||||||+|.||++||..+. .|.+|+||||.+..+
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~g 39 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNE 39 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCC
Confidence 469999999999999999985 699999999987543
No 272
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=3.1e-05 Score=81.99 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=40.2
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcccccccc
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNG 104 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g 104 (584)
+||+|+|||+|||+||++|++.|++|||+|.+++.+++........|
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg 47 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDG 47 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCC
Confidence 58999999999999999999999999999999999987543333333
No 273
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.71 E-value=0.0012 Score=73.69 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHh-CCcEEEeCCceeEEc--CCeE---EEEeCCCCeEEEEecceEEEccCCC
Q 045826 276 DKRITASAEEKFKR-DGIDLKTGSMVVKLS--DKEI---STKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 276 ~~~~~~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v---~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
...+.+.+.+.+.+ .||+++.++.++++. ++.+ ...+..+|+...+.++.||+|||-.
T Consensus 136 G~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 136 GFYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 35566667776665 699999999999983 3333 2334345765568999999999953
No 274
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.70 E-value=0.00012 Score=79.47 Aligned_cols=91 Identities=22% Similarity=0.314 Sum_probs=68.0
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-------c--cccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-------N--MFDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||+|++|+.+|..++..+ .+|+++++.+.+. | .++.++.+...+.+++.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G--------------~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~ 204 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAG--------------VQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAM 204 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHC
Confidence 36789999999999999999998754 7899999887652 2 23566666777888999
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
||++++++.+.. .+.+. +.. ..+|.||+|+|...
T Consensus 205 Gv~~~~~~~v~~----~~~~~----~~~--~~~D~vilAtGa~~ 238 (467)
T TIGR01318 205 GIEFHLNCEVGR----DISLD----DLL--EDYDAVFLGVGTYR 238 (467)
T ss_pred CCEEECCCEeCC----ccCHH----HHH--hcCCEEEEEeCCCC
Confidence 999999987632 11111 111 46999999999644
No 275
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.70 E-value=7.6e-05 Score=71.11 Aligned_cols=138 Identities=25% Similarity=0.474 Sum_probs=93.3
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc---cccc-----------HHHH--H--HHHH
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL---NMFD-----------KRIT--A--SAEE 285 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il---~~~~-----------~~~~--~--~~~~ 285 (584)
+|+|||||+.|+.+|..|++. +.+|++++..+..- ..+. .... + .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~--------------~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP--------------GAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--------------TSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcC--------------CCeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999953 48999997766321 0000 0111 1 3344
Q ss_pred HHHhCCcEEEeCCceeEEcCCe-------EEEEeCCCCeEEEEecceEEEccCCCCC-chHH---------------HHH
Q 045826 286 KFKRDGIDLKTGSMVVKLSDKE-------ISTKDRATGQISSIPYGMVVWSTGIGTR-PVIM---------------DFM 342 (584)
Q Consensus 286 ~L~~~GV~v~~~~~V~~v~~~~-------v~~~~~~~G~~~~i~~D~vI~a~G~~~~-p~~~---------------~l~ 342 (584)
.+...+++++.++++.+++... +.+....+++..+++||.+|+|+|..+. |.+. .+.
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~ 146 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFL 146 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHH
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccc
Confidence 5577899999999999985432 1221111233446999999999996533 1111 111
Q ss_pred ------------------HHhCC--cCCCceeeCCCCccCCCCCEEEeCccccc
Q 045826 343 ------------------KQIGQ--ANRRVLATDEWLRVEGCESVYALGDCATI 376 (584)
Q Consensus 343 ------------------~~~~l--~~~g~i~Vd~~l~~~~~~~VfaiGD~a~~ 376 (584)
+..++ +.+|++.||+++|+ +.|||||+|||+.+
T Consensus 147 ~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 147 ELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGI 199 (201)
T ss_dssp THSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEE
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 34444 56899999999999 79999999999975
No 276
>PRK07538 hypothetical protein; Provisional
Probab=97.69 E-value=0.00018 Score=76.96 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=31.8
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4899999999999999999999999999998864
No 277
>PRK08275 putative oxidoreductase; Provisional
Probab=97.68 E-value=0.0015 Score=72.76 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEEc---CCe---EEEEeCCCCeEEEEecceEEEccCCC
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKLS---DKE---ISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~---~~~---v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
..+.+.+.+.+++.||+++.++.++++. ++. +...+..+|+...+.++.||+|||-.
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 4566777788888999999999999984 222 33333345765568999999999953
No 278
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.68 E-value=0.0013 Score=72.39 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=32.5
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAF 94 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~ 94 (584)
..||||||+|.||++||..+++ |.+|+||||.+....
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4699999999999999999976 899999999876443
No 279
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.67 E-value=0.00027 Score=79.40 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=71.9
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHH-HHHcCCcEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNI-VRKKGMDIQFKEAECYK 135 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~-~~~~g~~v~~~~~~v~~ 135 (584)
+++|+|||||+.|+.+|..|...|.+|+||++.+.+.- ..+ .++...+... +++.++++ +....|..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~----------~~d-~eis~~l~~~ll~~~GV~I-~~~~~V~~ 379 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP----------LLD-ADVAKYFERVFLKSKPVRV-HLNTLIEY 379 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc----------cCC-HHHHHHHHHHHhhcCCcEE-EcCCEEEE
Confidence 46899999999999999999999999999999876331 111 1334444554 35677555 34677888
Q ss_pred EecCCC--EEEEeecCc--cCCCC-----CceEEEeCCEEEEccCCCCCCCC
Q 045826 136 IDAEKK--QIYCRTTED--RTCGG-----KEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 136 id~~~~--~v~~~~~~~--~~~~~-----~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
|+..+. .+.+..... .+.++ ....++++|.+++|+|.+|+...
T Consensus 380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 876542 244421110 00000 01137999999999999988654
No 280
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.67 E-value=0.00023 Score=74.36 Aligned_cols=102 Identities=23% Similarity=0.326 Sum_probs=76.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEE-EEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFK-EAECYK 135 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~-~~~v~~ 135 (584)
..+||+||+|+.|+.+|..|...+.+||+|++.+...- . +-..++...+..++.+.++ +++ .+.+.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~-----~-----lf~~~i~~~~~~y~e~kgV--k~~~~t~~s~ 280 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP-----R-----LFGPSIGQFYEDYYENKGV--KFYLGTVVSS 280 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh-----h-----hhhHHHHHHHHHHHHhcCe--EEEEecceee
Confidence 56899999999999999999988999999999874221 1 2223567778999999984 454 445556
Q ss_pred EecCC--CE--EEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCC
Q 045826 136 IDAEK--KQ--IYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTP 180 (584)
Q Consensus 136 id~~~--~~--v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ip 180 (584)
++... +. |.+.++. ++++|-||+.+|++|+.....
T Consensus 281 l~~~~~Gev~~V~l~dg~----------~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 281 LEGNSDGEVSEVKLKDGK----------TLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred cccCCCCcEEEEEeccCC----------EeccCeEEEeecccccccccc
Confidence 65444 33 3344433 999999999999999877555
No 281
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.66 E-value=8.9e-05 Score=77.62 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=66.6
Q ss_pred ccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccc---------ccHHHHHHHHHHHHhCC
Q 045826 221 KILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM---------FDKRITASAEEKFKRDG 291 (584)
Q Consensus 221 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~---------~~~~~~~~~~~~L~~~G 291 (584)
.+++|+|||+|++|+++|..|++.+ .+|+++++.+.+.+. ++.+......+.+.+.|
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLG--------------YEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAG 82 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCC
Confidence 4569999999999999999998753 799999998776432 22333344556677789
Q ss_pred cEEEeCCceeEEcC-----CeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 292 IDLKTGSMVVKLSD-----KEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 292 V~v~~~~~V~~v~~-----~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
|+++.++.+..++. +........+.+...+.+|.||+|+|.
T Consensus 83 i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs 128 (352)
T PRK12770 83 VVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT 128 (352)
T ss_pred eEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCC
Confidence 99999988866532 111110100011112789999999995
No 282
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.66 E-value=0.0016 Score=72.74 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEc--C----Ce---EEEEeCCCCeEEEEecceEEEccCCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLS--D----KE---ISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~----~~---v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
...+.+.+.+.+++.||+++.++.++++. + +. +...+..+|+...+.++.||+|||-.
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 35667778888888999999999999973 3 23 33333345765568999999999953
No 283
>PLN02546 glutathione reductase
Probab=97.65 E-value=0.00029 Score=77.87 Aligned_cols=102 Identities=16% Similarity=0.238 Sum_probs=71.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYK 135 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~ 135 (584)
..++|+|||||+.|+.+|..|...+.+|+|+++.+.... . ...++...+.+.+++.|+++ +....+..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-----~------~d~~~~~~l~~~L~~~GV~i-~~~~~v~~ 318 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-----G------FDEEVRDFVAEQMSLRGIEF-HTEESPQA 318 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-----c------cCHHHHHHHHHHHHHCCcEE-EeCCEEEE
Confidence 357999999999999999999999999999998764321 1 12244455677788888655 23566777
Q ss_pred EecC-CCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 136 IDAE-KKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 136 id~~-~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
+... +..+.+.... .....+|.+++|+|..|+..
T Consensus 319 i~~~~~g~v~v~~~~--------g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 319 IIKSADGSLSLKTNK--------GTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EEEcCCCEEEEEECC--------eEEEecCEEEEeeccccCCC
Confidence 7642 3344443221 11445899999999998765
No 284
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.65 E-value=0.00086 Score=75.79 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCcEEEeCCceeEEc--CCe---EEEEeCCCCeEEEEecceEEEccC
Q 045826 278 RITASAEEKFKRDGIDLKTGSMVVKLS--DKE---ISTKDRATGQISSIPYGMVVWSTG 331 (584)
Q Consensus 278 ~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~---v~~~~~~~G~~~~i~~D~vI~a~G 331 (584)
.+...+.+.+.+.||+++.++.++++. ++. +.+.+..+|+...+.++.||+|||
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 444556677788999999999999984 333 455544568766788999999999
No 285
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.65 E-value=0.00023 Score=71.99 Aligned_cols=107 Identities=18% Similarity=0.259 Sum_probs=81.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
.-+++++|||||+-||....-..+.|.+||+||-.+..+.. + ..++...++..+.+.++.+ .+..+|.
T Consensus 209 ~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~----------m-D~Eisk~~qr~L~kQgikF-~l~tkv~ 276 (506)
T KOG1335|consen 209 EVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV----------M-DGEISKAFQRVLQKQGIKF-KLGTKVT 276 (506)
T ss_pred hCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc----------c-CHHHHHHHHHHHHhcCcee-EeccEEE
Confidence 45789999999999999998888999999999976654331 2 2356777888898888665 3578899
Q ss_pred EEecCCC-E--EEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 135 KIDAEKK-Q--IYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 135 ~id~~~~-~--v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
.+++... . |.+.+.. +++..++++|.|.+++|.+|..-+
T Consensus 277 ~a~~~~dg~v~i~ve~ak-----~~k~~tle~DvlLVsiGRrP~t~G 318 (506)
T KOG1335|consen 277 SATRNGDGPVEIEVENAK-----TGKKETLECDVLLVSIGRRPFTEG 318 (506)
T ss_pred EeeccCCCceEEEEEecC-----CCceeEEEeeEEEEEccCcccccC
Confidence 8888766 4 4444433 333569999999999999987543
No 286
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.65 E-value=0.00044 Score=69.96 Aligned_cols=93 Identities=25% Similarity=0.350 Sum_probs=66.7
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc------------------------------
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN------------------------------ 273 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~------------------------------ 273 (584)
.|+|||||++|+-+|..|++.+ .+|+++++.+..-.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKG--------------LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 6899999999999999998754 56666666542100
Q ss_pred --------------------cccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccC
Q 045826 274 --------------------MFDKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTG 331 (584)
Q Consensus 274 --------------------~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G 331 (584)
--...+.+.+.+.+++.|++++.+++++++. ++++.+....++. ++.+|.||.|+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~a~~vv~a~G 145 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEG--TVTAKIVIGADG 145 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccE--EEEeCEEEECCC
Confidence 0123456677788888999999999999874 4555443322233 499999999999
Q ss_pred C
Q 045826 332 I 332 (584)
Q Consensus 332 ~ 332 (584)
.
T Consensus 146 ~ 146 (295)
T TIGR02032 146 S 146 (295)
T ss_pred c
Confidence 4
No 287
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.63 E-value=0.00016 Score=76.51 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=31.7
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
.+|+|||||.+|+++|..|++.|++|+|||+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 3799999999999999999999999999998765
No 288
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.62 E-value=0.0023 Score=71.47 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEEcC-----Ce---EEEEeCCCCeEEEEecceEEEccCCC
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKLSD-----KE---ISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~~-----~~---v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
......+...+++.+++++.++.++++.. +. +...+..+|+...+.++.||+|||-.
T Consensus 126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 34445555667777899999999998742 22 44434445776678999999999953
No 289
>PRK06847 hypothetical protein; Provisional
Probab=97.62 E-value=0.00047 Score=72.67 Aligned_cols=54 Identities=19% Similarity=0.334 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
+.+.+.+.+.+++.|++++.+++|++++ ++++.+.. .+|++ +.+|.||.|.|..
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vI~AdG~~ 162 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTF-SDGTT--GRYDLVVGADGLY 162 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEE-cCCCE--EEcCEEEECcCCC
Confidence 4566777778888899999999999985 34444443 34765 8999999999953
No 290
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.62 E-value=0.0017 Score=69.74 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=38.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPL 97 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~ 97 (584)
..+||||||+|.+|+.+|..|++.|.+|.++|++++.++...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 458999999999999999999999999999999999887543
No 291
>PRK12831 putative oxidoreductase; Provisional
Probab=97.62 E-value=0.00013 Score=79.09 Aligned_cols=91 Identities=23% Similarity=0.304 Sum_probs=66.0
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-------cc--ccH-HHHHHHHHHHHh
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-------NM--FDK-RITASAEEKFKR 289 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~--~~~-~~~~~~~~~L~~ 289 (584)
..+++|+|||+|++|+.+|..|++.+ .+|+++++.+.+. |. ++. .+.....+.+++
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 203 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMG--------------YDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK 203 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH
Confidence 57789999999999999999999864 7999999876542 21 222 255666678889
Q ss_pred CCcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 290 DGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 290 ~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
.||++++++.+. ..+.+.+ ... .+.+|.||+|+|.
T Consensus 204 ~gv~i~~~~~v~----~~v~~~~---~~~-~~~~d~viiAtGa 238 (464)
T PRK12831 204 LGVKIETNVVVG----KTVTIDE---LLE-EEGFDAVFIGSGA 238 (464)
T ss_pred cCCEEEcCCEEC----CcCCHHH---HHh-ccCCCEEEEeCCC
Confidence 999999998652 1122211 211 2679999999995
No 292
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.61 E-value=7.2e-05 Score=72.36 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=35.6
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p 96 (584)
..|+|||+|++|++||..|+..|++|+|+||..-.++..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccch
Confidence 579999999999999999999999999999998777654
No 293
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.60 E-value=0.0029 Score=69.41 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=34.2
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAF 94 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~ 94 (584)
+||+|||+|++|+.+|+.|++.|++|.+||++...+.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 4899999999999999999999999999999987764
No 294
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.60 E-value=0.00081 Score=75.35 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=30.2
Q ss_pred EEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 60 VVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 60 VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
|||||+|.|||+||..+++.|.+|+||||.+.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~ 32 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA 32 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 79999999999999999999999999999874
No 295
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.57 E-value=0.0017 Score=72.07 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCe-EE---EEeCCCCeEEEEecceEEEccCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLS--DKE-IS---TKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~-v~---~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
...+...+.+.+++.||++++++.++++. +++ |. ..+..+|+...+.++.||+|||-
T Consensus 133 G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 133 GHEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 45677778888888999999999999973 333 32 33324576557899999999994
No 296
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.57 E-value=0.00044 Score=75.98 Aligned_cols=138 Identities=20% Similarity=0.258 Sum_probs=86.0
Q ss_pred ceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccc----------------------------
Q 045826 223 LHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM---------------------------- 274 (584)
Q Consensus 223 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~---------------------------- 274 (584)
|+|+|||+|++|+-.+..+.+.+ .+++++|+.+.+.+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g--------------~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG--------------LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT---------------EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHCC--------------CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhc
Confidence 59999999999999999998754 678888766544211
Q ss_pred ------------c--cHHHHHHHHHHHHhCCc--EEEeCCceeEEcC--C-----eEEEEeCCCCeEEEEecceEEEccC
Q 045826 275 ------------F--DKRITASAEEKFKRDGI--DLKTGSMVVKLSD--K-----EISTKDRATGQISSIPYGMVVWSTG 331 (584)
Q Consensus 275 ------------~--~~~~~~~~~~~L~~~GV--~v~~~~~V~~v~~--~-----~v~~~~~~~G~~~~i~~D~vI~a~G 331 (584)
+ ..++.++++.+.++.++ .++++++|++|+. + .-.+....+|+..+..+|.||+|+|
T Consensus 68 fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 68 FSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp CTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 1 25677888888888776 5889999999852 1 2333344457655567999999999
Q ss_pred CCCCchHHHHHHHhCCc-CCCceeeCCCCccC---CCCCEEEeCcccc
Q 045826 332 IGTRPVIMDFMKQIGQA-NRRVLATDEWLRVE---GCESVYALGDCAT 375 (584)
Q Consensus 332 ~~~~p~~~~l~~~~~l~-~~g~i~Vd~~l~~~---~~~~VfaiGD~a~ 375 (584)
.-..|.+..- .--|++ -+|.+.=...++.+ ...+|-++|-..+
T Consensus 148 ~~~~P~~P~~-~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 148 HFSKPNIPEP-SFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp SSSCESB------CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred CcCCCCCChh-hhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 8777765420 001232 24544433333322 2467999998775
No 297
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.57 E-value=0.00053 Score=74.13 Aligned_cols=53 Identities=15% Similarity=0.314 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEE--cCC-eEEEEeCCCCeEEEEecceEEEccCC
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKL--SDK-EISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v--~~~-~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
..+.+.+.+..++.||+++.++ |+.+ +++ .+.....++|++ +.+|.+|=|+|.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~--i~ad~~IDASG~ 209 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRT--IEADFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEE--EEESEEEE-SGG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCE--EEEeEEEECCCc
Confidence 4566778888889999999885 6555 333 344444455775 999999999995
No 298
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.57 E-value=5.8e-05 Score=81.65 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=35.5
Q ss_pred CeEEEECCcHHHHHHHHhcccCC--CeEEEEcCCCCCCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNS--FEVQVVSPRNYFAFTP 96 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g--~~V~lid~~~~~~~~p 96 (584)
++|+|||||+|||+||+.|++.| ++|+|+|++++.++..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 47999999999999999999877 8999999999988754
No 299
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.57 E-value=4e-05 Score=80.05 Aligned_cols=92 Identities=18% Similarity=0.315 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhC-CcEEEeCCceeEEcC--Ce---EEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCCc---
Q 045826 278 RITASAEEKFKRD-GIDLKTGSMVVKLSD--KE---ISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQA--- 348 (584)
Q Consensus 278 ~~~~~~~~~L~~~-GV~v~~~~~V~~v~~--~~---v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l~--- 348 (584)
.+.+.+.+.|++. |++++++++|+.++. ++ |.+.+..+|+..++.++.|++.+|-.+- .|+.+.++.
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL----~LLqksgi~e~~ 257 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL----PLLQKSGIPEGK 257 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH----HHHHHcCChhhc
Confidence 4556666677776 999999999999953 33 6666666677778999999999994333 366777772
Q ss_pred CCCceeeC-CCCccCC-------CCCEEEeCcc
Q 045826 349 NRRVLATD-EWLRVEG-------CESVYALGDC 373 (584)
Q Consensus 349 ~~g~i~Vd-~~l~~~~-------~~~VfaiGD~ 373 (584)
.=|...|. .+|++.+ +.-||..-.+
T Consensus 258 gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 258 GYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred ccCCCcccceEEecCCHHHHHHhcceeeeeCCC
Confidence 22345554 4566622 2346766554
No 300
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.56 E-value=0.00018 Score=83.04 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=67.0
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-------c--cccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-------N--MFDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. | .++.++.+...+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRG--------------YDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 46789999999999999999999864 7999999865432 2 13556666666788899
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
||+|++++.+. ..+.+.+ .. ...+|.||+|+|.
T Consensus 495 gv~~~~~~~v~----~~v~~~~---l~--~~~ydavvlAtGa 527 (752)
T PRK12778 495 GVKFETDVIVG----KTITIEE---LE--EEGFKGIFIASGA 527 (752)
T ss_pred CCEEECCCEEC----CcCCHHH---Hh--hcCCCEEEEeCCC
Confidence 99999997651 2232222 22 2669999999996
No 301
>PRK07208 hypothetical protein; Provisional
Probab=97.56 E-value=6.9e-05 Score=81.88 Aligned_cols=42 Identities=29% Similarity=0.301 Sum_probs=38.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p 96 (584)
+.+++|||||||++||++|+.|.+.|++|+|+|+++..++..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 356799999999999999999999999999999999988753
No 302
>PLN02268 probable polyamine oxidase
Probab=97.56 E-value=6.9e-05 Score=80.81 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=37.1
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCc
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPL 97 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~ 97 (584)
++|+|||||+|||+||+.|.+.|++|+|+|++++.++...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 4899999999999999999999999999999999988654
No 303
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.55 E-value=0.0028 Score=70.69 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHh-CCcEEEeCCceeEEc--CCeEE---EEeCCCCeEEEEecceEEEccCC
Q 045826 276 DKRITASAEEKFKR-DGIDLKTGSMVVKLS--DKEIS---TKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 276 ~~~~~~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v~---~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
...+...+.+.+.+ .+|+++.++.++++. ++.+. ..+..+|+...+.++.||+|+|-
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 35566666666655 589999999999974 33332 33334576557899999999994
No 304
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.53 E-value=0.0033 Score=69.60 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAF 94 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~ 94 (584)
..||||||+|.||++||..+++. .+|+||||......
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 46999999999999999999875 89999999875443
No 305
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.49 E-value=0.00032 Score=76.57 Aligned_cols=90 Identities=24% Similarity=0.302 Sum_probs=67.3
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-------cc--ccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-------NM--FDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~--~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||+|++|+++|..|++.+ .+|+++++.+++. |. ++..+.....+.+++.
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g--------------~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAG--------------HTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAE 206 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhC
Confidence 35679999999999999999998754 7899999887653 22 3556666667888999
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
||++++++.+..- + .. ++. ...+|.||+|+|..
T Consensus 207 Gv~~~~~~~v~~~----~--~~--~~~--~~~~d~VilAtGa~ 239 (485)
T TIGR01317 207 GIDFVTNTEIGVD----I--SA--DEL--KEQFDAVVLAGGAT 239 (485)
T ss_pred CCEEECCCEeCCc----c--CH--HHH--HhhCCEEEEccCCC
Confidence 9999999877410 1 00 011 25799999999964
No 306
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.47 E-value=0.0017 Score=70.20 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=58.8
Q ss_pred HhhhCcCCC-CCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecce
Q 045826 249 LSKLYPSLK-EFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGM 325 (584)
Q Consensus 249 ~~~~~~~~~-~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~ 325 (584)
..+.||-+. +++.-.|..+++..+. +..+-..+....++.|+.|+.++.|+++. .++..-+.+.-|. |++..
T Consensus 160 ~~~~~pLLn~d~v~g~Ly~P~DG~~D--P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~---iet~~ 234 (856)
T KOG2844|consen 160 TQELFPLLNVDDVYGGLYSPGDGVMD--PAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS---IETEC 234 (856)
T ss_pred HHHhCcccchhHheeeeecCCCcccC--HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc---eecce
Confidence 345566655 5678888888887654 24455666777788999999999999984 3333233333476 99999
Q ss_pred EEEccCCCCC
Q 045826 326 VVWSTGIGTR 335 (584)
Q Consensus 326 vI~a~G~~~~ 335 (584)
+|-|+|++++
T Consensus 235 ~VNaaGvWAr 244 (856)
T KOG2844|consen 235 VVNAAGVWAR 244 (856)
T ss_pred EEechhHHHH
Confidence 9999998775
No 307
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.46 E-value=0.0001 Score=78.04 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=32.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
.+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4699999999999999999999999999999875
No 308
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.46 E-value=0.00021 Score=84.37 Aligned_cols=92 Identities=21% Similarity=0.352 Sum_probs=68.4
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-------cc--ccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-------NM--FDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~--~~~~~~~~~~~~L~~~ 290 (584)
..+++|+||||||+|+.+|..|++.+ .+|+++++.+.+. |. ++.++.+...+.+++.
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G--------------~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~ 493 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYG--------------VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDI 493 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHC
Confidence 35789999999999999999999865 7999999887653 22 3567777888889999
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
||++++++.+ +..+.+.+.. + ...+|.||+|||..
T Consensus 494 Gv~~~~~~~v----g~~~~~~~l~--~--~~~yDaViIATGa~ 528 (1006)
T PRK12775 494 GVKIETNKVI----GKTFTVPQLM--N--DKGFDAVFLGVGAG 528 (1006)
T ss_pred CCEEEeCCcc----CCccCHHHHh--h--ccCCCEEEEecCCC
Confidence 9999999754 1122221110 0 14689999999963
No 309
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.45 E-value=0.00059 Score=72.29 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=66.1
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccccc--HH-----------------HHHHHH
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFD--KR-----------------ITASAE 284 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~--~~-----------------~~~~~~ 284 (584)
+|+|||||.+|+|+|..|++.+ .+|+|+++.+.++.... .. ....+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G--------------~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~ 67 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAG--------------VPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLK 67 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHH
Confidence 7999999999999999999865 89999998776543210 00 011244
Q ss_pred HHHHhCCcEEEeCCceeEEcCCeEEEEeC-------------------CCCeEEEEe-cceEEEccCCCCCchHHHHHHH
Q 045826 285 EKFKRDGIDLKTGSMVVKLSDKEISTKDR-------------------ATGQISSIP-YGMVVWSTGIGTRPVIMDFMKQ 344 (584)
Q Consensus 285 ~~L~~~GV~v~~~~~V~~v~~~~v~~~~~-------------------~~G~~~~i~-~D~vI~a~G~~~~p~~~~l~~~ 344 (584)
+.++..|..+........+..++....+. ..++...+. +|.||+|||..++..+..-+..
T Consensus 68 ~ei~~lg~l~~~~ad~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~~d~VViATG~~~s~~La~~L~~ 147 (433)
T TIGR00137 68 TEMRQLSSLIITAADRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPEEGITVIATGPLTSPALSEDLKE 147 (433)
T ss_pred HHHhhcCeeeeehhhhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEccCCeEEEeCCCCccHHHHHHHHH
Confidence 66777776666655555554443222110 114333444 6799999996555544333444
No 310
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.44 E-value=0.00022 Score=77.27 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=63.8
Q ss_pred ccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc--------cc--cHHHHHHHHHHHHhC
Q 045826 221 KILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN--------MF--DKRITASAEEKFKRD 290 (584)
Q Consensus 221 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~--------~~--~~~~~~~~~~~L~~~ 290 (584)
..++|+|||+||+|+.+|..|+... .+.+|+|+++.+.+.. .. ...+.....+.+...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~ 92 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDD 92 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHC
Confidence 4569999999999999999998631 2489999999987642 11 123334555667788
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
+|+++.|..+- ..+.+.+ -. ..+|.||+|+|..
T Consensus 93 ~v~~~~nv~vg----~dvtl~~---L~---~~yDaVIlAtGa~ 125 (491)
T PLN02852 93 RVSFFGNVTLG----RDVSLSE---LR---DLYHVVVLAYGAE 125 (491)
T ss_pred CeEEEcCEEEC----ccccHHH---Hh---hhCCEEEEecCCC
Confidence 99999886551 2233322 22 4689999999964
No 311
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.44 E-value=0.00036 Score=78.90 Aligned_cols=90 Identities=22% Similarity=0.341 Sum_probs=68.1
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc---------cccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN---------MFDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~---------~~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||+|++|+.+|..|+..+ .+|+++++.+.+.. .++..+.+...+.+++.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 373 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAG--------------VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAM 373 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHC
Confidence 35789999999999999999999864 78999999886532 24666666677888999
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
||++++++.+.. .+.+.+ . ...+|.||+|+|..
T Consensus 374 Gv~~~~~~~v~~----~~~~~~---l---~~~~DaV~latGa~ 406 (639)
T PRK12809 374 GIDFHLNCEIGR----DITFSD---L---TSEYDAVFIGVGTY 406 (639)
T ss_pred CeEEEcCCccCC----cCCHHH---H---HhcCCEEEEeCCCC
Confidence 999999987631 112211 1 14689999999954
No 312
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.44 E-value=0.00046 Score=72.66 Aligned_cols=96 Identities=22% Similarity=0.233 Sum_probs=65.1
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc---------cccHHHH--------------
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN---------MFDKRIT-------------- 280 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~---------~~~~~~~-------------- 280 (584)
.|+|||||++|+.+|..|++. .++.+|.++++.+.+.+ ..++...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~------------~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~ 68 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA------------RPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGY 68 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc------------CCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCC
Confidence 379999999999999998863 13578999988774432 1111110
Q ss_pred --------------------HHHHHH-HHhCCcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCCCCc
Q 045826 281 --------------------ASAEEK-FKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRP 336 (584)
Q Consensus 281 --------------------~~~~~~-L~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p 336 (584)
..+.+. +++.+..++++++|++++++++++.+ |++ +.+|.||.|.|..+.+
T Consensus 69 ~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~d---g~~--~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 69 EVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAP---GTR--INARSVIDCRGFKPSA 140 (370)
T ss_pred EEECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECC---CCE--EEeeEEEECCCCCCCc
Confidence 011122 23334447779999999888887743 765 9999999999976543
No 313
>PRK07236 hypothetical protein; Provisional
Probab=97.44 E-value=0.00071 Score=71.74 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=64.8
Q ss_pred ceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccc------ccHHHHHHH-------------
Q 045826 223 LHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM------FDKRITASA------------- 283 (584)
Q Consensus 223 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~------~~~~~~~~~------------- 283 (584)
.+|+|||||++|+.+|..|++.+ .+|+|+++.+..++. +.+...+.+
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~ 72 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAG--------------WDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGV 72 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccccc
Confidence 48999999999999999999854 678888776543221 122222211
Q ss_pred ------------------------------HHHHHh--CCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEc
Q 045826 284 ------------------------------EEKFKR--DGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWS 329 (584)
Q Consensus 284 ------------------------------~~~L~~--~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a 329 (584)
.+.|.+ .+++++.+++|++++. +++++.. .+|++ +.+|+||.|
T Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vIgA 149 (386)
T PRK07236 73 PSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARF-ADGRR--ETADLLVGA 149 (386)
T ss_pred CccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEE-CCCCE--EEeCEEEEC
Confidence 111211 2467899999999853 4455443 34765 999999999
Q ss_pred cCCCCCchHHH
Q 045826 330 TGIGTRPVIMD 340 (584)
Q Consensus 330 ~G~~~~p~~~~ 340 (584)
-|. ...+..
T Consensus 150 DG~--~S~vR~ 158 (386)
T PRK07236 150 DGG--RSTVRA 158 (386)
T ss_pred CCC--CchHHH
Confidence 994 444443
No 314
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.43 E-value=0.00012 Score=79.68 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=36.6
Q ss_pred CCeEEEECCcHHHHHHHHhcccC----CCeEEEEcCCCCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSN----SFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~----g~~V~lid~~~~~~~~p 96 (584)
+++|+|||||++||++|+.|.+. |++|+|+|+++..++..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 47999999999999999999987 99999999999888753
No 315
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.41 E-value=0.0041 Score=69.50 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=32.2
Q ss_pred CCeEEEECCcHHHHHHHHhcccC--CCeEEEEcCCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSN--SFEVQVVSPRNYFAF 94 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~--g~~V~lid~~~~~~~ 94 (584)
..||||||||.|||+||..+++. |.+|+|+||.+....
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 46899999999999999999865 589999999865433
No 316
>PLN02576 protoporphyrinogen oxidase
Probab=97.41 E-value=0.00015 Score=79.71 Aligned_cols=42 Identities=26% Similarity=0.281 Sum_probs=37.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcccC-CCeEEEEcCCCCCCCCCc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSN-SFEVQVVSPRNYFAFTPL 97 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~-g~~V~lid~~~~~~~~p~ 97 (584)
..++|+|||||++||++|++|.+. |++|+|+|+++..++...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence 356899999999999999999988 999999999999888643
No 317
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.39 E-value=0.00046 Score=80.36 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=64.5
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc-------c--ccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN-------M--FDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~-------~--~~~~~~~~~~~~L~~~ 290 (584)
..+++|+||||||.|+.+|..|++.+ .+|+|+++.+.+.. . .+.+..+...+.+.+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G--------------~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~ 600 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAG--------------HPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFH 600 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhc
Confidence 35679999999999999999999864 79999998875432 1 2445555556778889
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
||+|++++.. .+.+.+ .+. ..+|.||+|+|..
T Consensus 601 GVe~~~g~~~------d~~ve~---l~~--~gYDaVIIATGA~ 632 (1012)
T TIGR03315 601 GVEFKYGCSP------DLTVAE---LKN--QGYKYVILAIGAW 632 (1012)
T ss_pred CcEEEEeccc------ceEhhh---hhc--ccccEEEECCCCC
Confidence 9999998531 112221 222 6689999999964
No 318
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.38 E-value=0.00014 Score=79.11 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=36.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccC------CCeEEEEcCCCCCCCCCc
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSN------SFEVQVVSPRNYFAFTPL 97 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~------g~~V~lid~~~~~~~~p~ 97 (584)
|++|+|||||++||+||+.|.+. +++|+|+|++++.++...
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 46899999999999999999864 489999999999888643
No 319
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.00018 Score=76.24 Aligned_cols=106 Identities=13% Similarity=0.198 Sum_probs=67.6
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC-CCCCCccccc---ccccc--------------------------
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY-FAFTPLLPSV---TNGTV-------------------------- 106 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~-~~~~p~~~~~---~~g~~-------------------------- 106 (584)
.+||+|||||.||+.||...++.|.++.|+--+.. .++.+..|.+ ..|.+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 48999999999999999999999999999876533 2222222211 01100
Q ss_pred --------------CcccccHHHHHHHHHcCCcEEEEEEEEEEEecCCCE----EEEeecCccCCCCCceEEEeCCEEEE
Q 045826 107 --------------EARSIVEPIRNIVRKKGMDIQFKEAECYKIDAEKKQ----IYCRTTEDRTCGGKEEFALDYDILVI 168 (584)
Q Consensus 107 --------------~~~~i~~~~~~~~~~~g~~v~~~~~~v~~id~~~~~----v~~~~~~~~~~~~~~~~~i~yD~LVl 168 (584)
+...+...++..+.... ++.++++.|+++..++.. |.+..+. .+.++.||+
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~-NL~l~q~~v~dli~e~~~~v~GV~t~~G~----------~~~a~aVVl 152 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQP-NLHLLQGEVEDLIVEEGQRVVGVVTADGP----------EFHAKAVVL 152 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCC-CceehHhhhHHHhhcCCCeEEEEEeCCCC----------eeecCEEEE
Confidence 00111222334444443 577889999998774442 3333332 899999999
Q ss_pred ccCCC
Q 045826 169 AMGAQ 173 (584)
Q Consensus 169 AtGs~ 173 (584)
+||.-
T Consensus 153 TTGTF 157 (621)
T COG0445 153 TTGTF 157 (621)
T ss_pred eeccc
Confidence 99973
No 320
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.37 E-value=0.00047 Score=78.24 Aligned_cols=90 Identities=26% Similarity=0.306 Sum_probs=66.4
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-------c--cccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-------N--MFDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||+|++|+.+|..|++.+ .+|+++++.+.+. | .++.++.....+.+++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--------------~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 390 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--------------VAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM 390 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHC
Confidence 46789999999999999999999864 7899999887642 2 23556666667788899
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
||++++++.+.. .+.+.+ - ...+|.||+|+|..
T Consensus 391 Gv~~~~~~~v~~----~i~~~~---~---~~~~DavilAtGa~ 423 (654)
T PRK12769 391 GIEFELNCEVGK----DISLES---L---LEDYDAVFVGVGTY 423 (654)
T ss_pred CeEEECCCEeCC----cCCHHH---H---HhcCCEEEEeCCCC
Confidence 999999986621 111111 1 14689999999953
No 321
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.37 E-value=0.0069 Score=60.06 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=35.1
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcc--cCCCeEEEEcCCCCCC
Q 045826 53 GEFKKKKVVVLGTGWAGTTFLKILK--SNSFEVQVVSPRNYFA 93 (584)
Q Consensus 53 ~~~~~~~VVIVGgG~AGl~aA~~L~--~~g~~V~lid~~~~~~ 93 (584)
.+...+|+||||||..|++.|++|. .++.+|.|+|+...+.
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 4456799999999999999999886 6799999999987654
No 322
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.36 E-value=0.00017 Score=79.13 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=37.8
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccc
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLP 99 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~ 99 (584)
+||||||||++||+||..|++.|++|+|+|+++..++.....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~ 43 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTF 43 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccee
Confidence 689999999999999999999999999999999888765433
No 323
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.33 E-value=0.00046 Score=74.03 Aligned_cols=89 Identities=24% Similarity=0.306 Sum_probs=68.2
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc---------cccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN---------MFDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~---------~~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||+||.|..+|..|++.+ ..|+++++.+.+.. .++.++.+...+.|++.
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G--------------~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~ 186 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAG--------------HDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERS 186 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCC--------------CeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHc
Confidence 35579999999999999999999865 89999998887642 24668888899999999
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
||+|++++++-. .+++.. ..-++|.|++++|.
T Consensus 187 Gv~~~~~~~vG~----~it~~~------L~~e~Dav~l~~G~ 218 (457)
T COG0493 187 GVEFKLNVRVGR----DITLEE------LLKEYDAVFLATGA 218 (457)
T ss_pred CeEEEEcceECC----cCCHHH------HHHhhCEEEEeccc
Confidence 999999987631 111111 11345999999994
No 324
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.32 E-value=0.0013 Score=73.03 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=65.9
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc------------cc----ccHHHHHHHHHHH
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL------------NM----FDKRITASAEEKF 287 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il------------~~----~~~~~~~~~~~~L 287 (584)
.|+|||||+.|+.+|..+++.+ .+|+|+++.+ +. |. ....+.+.+.+.+
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g--------------~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~ 70 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAK--------------LDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQA 70 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHH
Confidence 8999999999999999998754 6888888753 21 11 1245667777888
Q ss_pred HhCCcEEEeCCceeEEcCCe--EEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 288 KRDGIDLKTGSMVVKLSDKE--ISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 288 ~~~GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
++.||+++ ++.|+.++.++ ..+.. .+|+ +.+|.+|+|||.++
T Consensus 71 ~~~gv~~~-~~~V~~i~~~~~~~~V~~-~~g~---~~a~~lVlATGa~p 114 (555)
T TIGR03143 71 QDFGVKFL-QAEVLDVDFDGDIKTIKT-ARGD---YKTLAVLIATGASP 114 (555)
T ss_pred HHcCCEEe-ccEEEEEEecCCEEEEEe-cCCE---EEEeEEEECCCCcc
Confidence 88999986 66788886432 33333 2343 78999999999644
No 325
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.30 E-value=0.00064 Score=76.95 Aligned_cols=90 Identities=16% Similarity=0.260 Sum_probs=66.4
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-------cc--ccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-------NM--FDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~--~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||+|++|+.+|..|++.+ .+|+++++.+.+. |. ++..+.+...+.+.+.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 256 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKG--------------HDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAM 256 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHc
Confidence 45679999999999999999998754 7899999887652 21 3556666667888899
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
||++++++.+. + .+.+.+ .. ..+|.||+|+|..
T Consensus 257 Gv~i~~~~~v~-~---dv~~~~---~~---~~~DaVilAtGa~ 289 (652)
T PRK12814 257 GAEFRFNTVFG-R---DITLEE---LQ---KEFDAVLLAVGAQ 289 (652)
T ss_pred CCEEEeCCccc-C---ccCHHH---HH---hhcCEEEEEcCCC
Confidence 99999988541 1 111111 22 3589999999964
No 326
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.30 E-value=0.00024 Score=74.43 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=35.3
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~ 95 (584)
+.||+|||||++|+++|..|++.|.+|+|+|+++..++.
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~ 39 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN 39 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 368999999999999999999889999999998877764
No 327
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.29 E-value=0.011 Score=59.14 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=31.5
Q ss_pred CCeEEEECCcHHHHHHHHhcc----cCCCeEEEEcCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILK----SNSFEVQVVSPRNYF 92 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~----~~g~~V~lid~~~~~ 92 (584)
..+|||||||-.|.+.|..|. ..|++|+++|++..+
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 568999999999999999997 457999999998643
No 328
>PLN02529 lysine-specific histone demethylase 1
Probab=97.29 E-value=0.00029 Score=79.61 Aligned_cols=56 Identities=25% Similarity=0.199 Sum_probs=44.0
Q ss_pred cccCCCcCccCCCCCCCCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC
Q 045826 38 SDSRPFQRIYGDSGEGEFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p 96 (584)
|..+|... ...++....++|+|||||++||+||..|++.|++|+|+|+++..++..
T Consensus 144 c~vnp~~~---~~~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 144 FGVSPSFA---SPIPEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred eeeccccc---CCCCcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCce
Confidence 44455433 123334567899999999999999999999999999999999887754
No 329
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00083 Score=75.96 Aligned_cols=95 Identities=21% Similarity=0.303 Sum_probs=71.5
Q ss_pred CHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc---------cccHHHHHHHHH
Q 045826 215 SDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN---------MFDKRITASAEE 285 (584)
Q Consensus 215 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~---------~~~~~~~~~~~~ 285 (584)
-++..+.+++|.|||+||+|+-+|..|.+.+ ..|++++|.+++.. .+|..+.+.-.+
T Consensus 1778 ~pp~~rtg~~vaiigsgpaglaaadqlnk~g--------------h~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ 1843 (2142)
T KOG0399|consen 1778 CPPAFRTGKRVAIIGSGPAGLAAADQLNKAG--------------HTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVD 1843 (2142)
T ss_pred CCcccccCcEEEEEccCchhhhHHHHHhhcC--------------cEEEEEEecCCcCceeeecCCccchhHHHHHHHHH
Confidence 3445578999999999999999999999876 79999999998743 256677777778
Q ss_pred HHHhCCcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 286 KFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 286 ~L~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
.|.+.||+|.+|++|-.- +.+ + +- .-+.|.||+|+|..
T Consensus 1844 ll~~egi~f~tn~eigk~----vs~-d---~l--~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1844 LLEQEGIRFVTNTEIGKH----VSL-D---EL--KKENDAIVLATGST 1881 (2142)
T ss_pred HHHhhCceEEeecccccc----ccH-H---HH--hhccCeEEEEeCCC
Confidence 899999999999876321 111 0 11 13468888888853
No 330
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.28 E-value=0.00079 Score=70.23 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=56.8
Q ss_pred CHHHHhccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccc-------ccHH------HHH
Q 045826 215 SDEERKKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM-------FDKR------ITA 281 (584)
Q Consensus 215 ~~~~~~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-------~~~~------~~~ 281 (584)
++-...-.++++|||||.+|++.|.+|++.+ .+|+||+..+.+... |+.. +.-
T Consensus 117 e~~~~~v~~svLVIGGGvAGitAAl~La~~G--------------~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP 182 (622)
T COG1148 117 EEIKVEVSKSVLVIGGGVAGITAALELADMG--------------FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAP 182 (622)
T ss_pred hhHHHhhccceEEEcCcHHHHHHHHHHHHcC--------------CeEEEEecCCcccccHHhhhccCCCcccchhhccc
Confidence 3334456789999999999999999999976 899999999887542 1111 112
Q ss_pred HHHHHHHhCCcEEEeCCceeEEcC
Q 045826 282 SAEEKFKRDGIDLKTGSMVVKLSD 305 (584)
Q Consensus 282 ~~~~~L~~~GV~v~~~~~V~~v~~ 305 (584)
.+.+.-...+|++++.++|++|++
T Consensus 183 ~m~~v~~hp~i~l~TyaeV~ev~G 206 (622)
T COG1148 183 KMVEVSNHPNIELITYAEVEEVSG 206 (622)
T ss_pred hhhhhccCCceeeeeeeeeeeecc
Confidence 223344556999999999999754
No 331
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.28 E-value=0.00074 Score=76.89 Aligned_cols=44 Identities=30% Similarity=0.289 Sum_probs=38.9
Q ss_pred CCCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC
Q 045826 53 GEFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 53 ~~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p 96 (584)
+...+++|+|||||++|+++|+.|.+.|++|+|+|+++..++..
T Consensus 234 ~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 234 EGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence 33456899999999999999999999999999999999887754
No 332
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.27 E-value=0.00078 Score=73.38 Aligned_cols=90 Identities=27% Similarity=0.377 Sum_probs=66.3
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc---------cccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN---------MFDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~---------~~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+.. .++..+.....+.+.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAG--------------HKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAE 206 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhC
Confidence 45679999999999999999998754 78999998876532 13455666666788899
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
||++++++.+.. + +... .. ...+|.||+|+|..
T Consensus 207 gv~~~~~~~v~~-~---~~~~----~~--~~~~d~vvlAtGa~ 239 (471)
T PRK12810 207 GIEFRTNVEVGK-D---ITAE----EL--LAEYDAVFLGTGAY 239 (471)
T ss_pred CcEEEeCCEECC-c---CCHH----HH--HhhCCEEEEecCCC
Confidence 999999986632 0 1000 11 25789999999964
No 333
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.27 E-value=0.00022 Score=73.35 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=70.4
Q ss_pred CCeEEEECCcHHHHHHHHhcc--------------cCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHc
Q 045826 57 KKKVVVLGTGWAGTTFLKILK--------------SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKK 122 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~--------------~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~ 122 (584)
.-++|||||||.|+.+|.+|+ ....+|||||..+...- +..+.+....++++.+.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-----------mFdkrl~~yae~~f~~~ 286 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-----------MFDKRLVEYAENQFVRD 286 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-----------HHHHHHHHHHHHHhhhc
Confidence 357999999999999999986 24578999998874221 11234566677888888
Q ss_pred CCcEEEEEEEEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 123 GMDIQFKEAECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 123 g~~v~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
++.++ ....|..++.+ .+.+...++ +..+++|--||-|||..++..
T Consensus 287 ~I~~~-~~t~Vk~V~~~--~I~~~~~~g------~~~~iPYG~lVWatG~~~rp~ 332 (491)
T KOG2495|consen 287 GIDLD-TGTMVKKVTEK--TIHAKTKDG------EIEEIPYGLLVWATGNGPRPV 332 (491)
T ss_pred cceee-cccEEEeecCc--EEEEEcCCC------ceeeecceEEEecCCCCCchh
Confidence 85543 34467777765 444444321 124899999999999987643
No 334
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.23 E-value=0.00027 Score=74.41 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=32.6
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
+++|+|||||++|+++|..|++.|++|+|||+++.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 46999999999999999999999999999998764
No 335
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.21 E-value=0.00029 Score=76.36 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=35.5
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p 96 (584)
+|+|||||++||++|+.|.+.|++|+|+|++++.++..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCc
Confidence 59999999999999999999999999999999888754
No 336
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.20 E-value=0.0016 Score=71.13 Aligned_cols=77 Identities=25% Similarity=0.285 Sum_probs=58.8
Q ss_pred ccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCce
Q 045826 221 KILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMV 300 (584)
Q Consensus 221 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V 300 (584)
.+++|+|||+|.+|+++|..|.+.+ .+|+++++.+. .....+.+.|++.||+++++..+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--------------~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~ 73 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--------------ARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGP 73 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCc
Confidence 3459999999999999998888754 78999987652 23345567788999999988654
Q ss_pred eEEcCCeEEEEeCCCCeEEEEecceEEEccCCCCC
Q 045826 301 VKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTR 335 (584)
Q Consensus 301 ~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 335 (584)
. . ...+|+||.++|+.+.
T Consensus 74 ~----------~-------~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 74 T----------L-------PEDTDLVVTSPGWRPD 91 (480)
T ss_pred c----------c-------cCCCCEEEECCCcCCC
Confidence 2 0 1568999999997554
No 337
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.008 Score=56.85 Aligned_cols=135 Identities=20% Similarity=0.244 Sum_probs=80.3
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccc-------ccH-------------------
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM-------FDK------------------- 277 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-------~~~------------------- 277 (584)
.|+|||+||+|+-+|.+|++. +.+|.++++.-.+..+ |+.
T Consensus 32 DViIVGaGPsGLtAAyyLAk~--------------g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKA--------------GLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred cEEEECcCcchHHHHHHHHhC--------------CceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce
Confidence 899999999999999999985 4899999877654321 111
Q ss_pred ------------HHHHHHHHHHHhCCcEEEeCCceeEE--cCC-eEE---EEeC---CCC---eEEEEecceEEEccCCC
Q 045826 278 ------------RITASAEEKFKRDGIDLKTGSMVVKL--SDK-EIS---TKDR---ATG---QISSIPYGMVVWSTGIG 333 (584)
Q Consensus 278 ------------~~~~~~~~~L~~~GV~v~~~~~V~~v--~~~-~v~---~~~~---~~G---~~~~i~~D~vI~a~G~~ 333 (584)
+....+....-+.|+++...+.|+.+ .++ +|. +.=+ ..| +...++++.||-+||.-
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 11122222334457788888888776 233 322 2100 011 12358999999999942
Q ss_pred CCchHHHHHHHhC---C--cCC-------C-ceeeCCCCccCCCCCEEEeCcccc
Q 045826 334 TRPVIMDFMKQIG---Q--ANR-------R-VLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 334 ~~p~~~~l~~~~~---l--~~~-------g-~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
.+....+.+... . ... + .+.|+.+-++ +||+|++|=.+.
T Consensus 178 -a~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~ 229 (262)
T COG1635 178 -AEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVN 229 (262)
T ss_pred -hHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHH
Confidence 233333343332 1 111 1 2444445444 899999998875
No 338
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.15 E-value=0.0022 Score=65.15 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=32.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPR 89 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~ 89 (584)
....||+|||||.+|-+.|+.|++.|.+|.+|||.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 44679999999999999999999999999999976
No 339
>PLN02463 lycopene beta cyclase
Probab=97.15 E-value=0.0029 Score=68.18 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=63.1
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-c-----------------------------
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-N----------------------------- 273 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-~----------------------------- 273 (584)
.|+|||||++|.-+|..+++.+ .+|.++++.+... |
T Consensus 30 DVvIVGaGpAGLalA~~La~~G--------------l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~ 95 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAG--------------LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVY 95 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEE
Confidence 8999999999999999998743 5666666543211 0
Q ss_pred --------------c-ccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 274 --------------M-FDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 274 --------------~-~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
. -...+.+.+.+.+.+.||+++ ..+|++++. +++.+.. ++|++ +.+|.||.|+|..+
T Consensus 96 ~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~-~dG~~--i~A~lVI~AdG~~s 169 (447)
T PLN02463 96 IDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVC-DDGVK--IQASLVLDATGFSR 169 (447)
T ss_pred EeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEE-CCCCE--EEcCEEEECcCCCc
Confidence 0 012334556666677899997 468888853 3343332 34765 99999999999644
No 340
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0029 Score=64.45 Aligned_cols=94 Identities=21% Similarity=0.386 Sum_probs=67.8
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcE-EEEecCC---------------ccccc-cccHHHHHHHHHH
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTR-ITLLEAG---------------DHILN-MFDKRITASAEEK 286 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~---------------~~il~-~~~~~~~~~~~~~ 286 (584)
.|+|||+||.|+-+|..+.+.. .+ +.+++.. +.+-. ...+++.+...+.
T Consensus 5 DviIIG~GPAGl~AAiya~r~~--------------l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~ 70 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAG--------------LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQ 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHH
Confidence 7999999999999999999865 33 3333322 11112 2467888888888
Q ss_pred HHhCCcEEEeCCceeEEcCCe--EEEEeCCCCeEEEEecceEEEccCCCCCc
Q 045826 287 FKRDGIDLKTGSMVVKLSDKE--ISTKDRATGQISSIPYGMVVWSTGIGTRP 336 (584)
Q Consensus 287 L~~~GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~~p 336 (584)
.+..|+++.. ..|.+++..+ ..+.. ++|+ +.++.||+|||....+
T Consensus 71 a~~~~~~~~~-~~v~~v~~~~~~F~v~t-~~~~---~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 71 AEKFGVEIVE-DEVEKVELEGGPFKVKT-DKGT---YEAKAVIIATGAGARK 117 (305)
T ss_pred HhhcCeEEEE-EEEEEEeecCceEEEEE-CCCe---EEEeEEEECcCCcccC
Confidence 8899999988 7788887654 34433 3354 8999999999975553
No 341
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.15 E-value=0.0053 Score=64.18 Aligned_cols=92 Identities=25% Similarity=0.360 Sum_probs=60.8
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEe-cCCcccc------------------------------
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLL-EAGDHIL------------------------------ 272 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv-~~~~~il------------------------------ 272 (584)
.|+|||||.+|+|+|..+++.+ .+|.|+ +..+.+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G--------------~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG--------------AKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----------------EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 4899999999999999999986 566666 2222211
Q ss_pred ----------------c-------ccc-HHHHHHHHHHHHh-CCcEEEeCCceeEE--cCCeEEEEeCCCCeEEEEecce
Q 045826 273 ----------------N-------MFD-KRITASAEEKFKR-DGIDLKTGSMVVKL--SDKEISTKDRATGQISSIPYGM 325 (584)
Q Consensus 273 ----------------~-------~~~-~~~~~~~~~~L~~-~GV~v~~~~~V~~v--~~~~v~~~~~~~G~~~~i~~D~ 325 (584)
| ..| ..+.+.+.+.|++ .+|+++ ..+|+++ +++.|.-..+.+|+. +.+|.
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~--~~a~~ 143 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEE--IEADA 143 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEE--EEECE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCE--EecCE
Confidence 0 111 2334556666766 689987 4678888 455566555566886 99999
Q ss_pred EEEccCC
Q 045826 326 VVWSTGI 332 (584)
Q Consensus 326 vI~a~G~ 332 (584)
||+|||.
T Consensus 144 vVlaTGt 150 (392)
T PF01134_consen 144 VVLATGT 150 (392)
T ss_dssp EEE-TTT
T ss_pred EEEeccc
Confidence 9999996
No 342
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.13 E-value=0.012 Score=64.81 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=29.7
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
..||||||+|.||++||..++ +.+|+||||.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 479999999999999999997 569999999875
No 343
>PLN02568 polyamine oxidase
Probab=97.12 E-value=0.00049 Score=75.86 Aligned_cols=41 Identities=34% Similarity=0.459 Sum_probs=36.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCC-----CeEEEEcCCCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNS-----FEVQVVSPRNYFAFTP 96 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g-----~~V~lid~~~~~~~~p 96 (584)
..++|+|||||++||++|..|.+.| ++|+|+|++++.++..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeE
Confidence 3578999999999999999999766 8999999999988764
No 344
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.11 E-value=0.00044 Score=75.84 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=36.4
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCc
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPL 97 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~ 97 (584)
.||||||||.+||++|..|++.|++|+|+|+++..++...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAG 40 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence 4799999999999999999999999999999998877543
No 345
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.10 E-value=0.003 Score=74.91 Aligned_cols=100 Identities=19% Similarity=0.224 Sum_probs=68.0
Q ss_pred cceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccc-----------cHHHHHHHHHHHHhC
Q 045826 222 ILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMF-----------DKRITASAEEKFKRD 290 (584)
Q Consensus 222 ~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~-----------~~~~~~~~~~~L~~~ 290 (584)
...|+|||||+.|+..|..+++.+ .+|+|++..+.+.+.+ ..++.....+.+++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G--------------~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 228 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAG--------------ARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAM 228 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcC
Confidence 468999999999999999998754 7899999876653311 123334455566655
Q ss_pred -CcEEEeCCceeEEcCCe-EEEEe-C-----------CCCeEEEEecceEEEccCCCCC
Q 045826 291 -GIDLKTGSMVVKLSDKE-ISTKD-R-----------ATGQISSIPYGMVVWSTGIGTR 335 (584)
Q Consensus 291 -GV~v~~~~~V~~v~~~~-v~~~~-~-----------~~G~~~~i~~D~vI~a~G~~~~ 335 (584)
+|++++++.|..+..+. +.... . ..+...++.+|.||+|||....
T Consensus 229 ~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r 287 (985)
T TIGR01372 229 PEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER 287 (985)
T ss_pred CCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc
Confidence 59999999999886543 21110 0 0011124899999999996443
No 346
>PRK07121 hypothetical protein; Validated
Probab=97.09 E-value=0.00068 Score=74.33 Aligned_cols=41 Identities=22% Similarity=0.122 Sum_probs=36.6
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p 96 (584)
...||||||+|.||++||.++++.|.+|+||||.+..++..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 46799999999999999999999999999999998766543
No 347
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.07 E-value=0.00055 Score=76.53 Aligned_cols=36 Identities=33% Similarity=0.435 Sum_probs=33.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
..+.+|+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 346799999999999999999999999999999875
No 348
>PLN02661 Putative thiazole synthesis
Probab=97.06 E-value=0.012 Score=60.57 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=77.9
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc---------------------------ccc
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN---------------------------MFD 276 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~---------------------------~~~ 276 (584)
.|+|||+|++|+-+|..+++. ++.+|+++++...+.. .++
T Consensus 94 DVlIVGaG~AGl~AA~~La~~-------------~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd 160 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKN-------------PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYD 160 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHc-------------CCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcc
Confidence 899999999999999999863 1367888877653311 000
Q ss_pred -----------HHHHHHHHH-HHHhCCcEEEeCCceeEEc--CCe---EEEE------eCCCC---eEEEEecceEEEcc
Q 045826 277 -----------KRITASAEE-KFKRDGIDLKTGSMVVKLS--DKE---ISTK------DRATG---QISSIPYGMVVWST 330 (584)
Q Consensus 277 -----------~~~~~~~~~-~L~~~GV~v~~~~~V~~v~--~~~---v~~~------~~~~G---~~~~i~~D~vI~a~ 330 (584)
..+...+.+ .+++.||+++.++.+.++. ++. +.+. +..++ +...+.++.||+||
T Consensus 161 ~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlAT 240 (357)
T PLN02661 161 EQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240 (357)
T ss_pred cCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcC
Confidence 111112333 3345789999999988873 232 3321 11111 22358999999999
Q ss_pred CCCCCchHHHHHHH---hCCcC----CC--------ceeeCCCCccCCCCCEEEeCcccc
Q 045826 331 GIGTRPVIMDFMKQ---IGQAN----RR--------VLATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 331 G~~~~p~~~~l~~~---~~l~~----~g--------~i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
|... |......+. +++.. -. ...|+.+-++ +|++|++|=.+.
T Consensus 241 Gh~g-~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~ 297 (357)
T PLN02661 241 GHDG-PFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVA 297 (357)
T ss_pred CCCC-cchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchh
Confidence 9532 222222222 22210 01 1223333333 899999998875
No 349
>PRK08244 hypothetical protein; Provisional
Probab=97.03 E-value=0.0055 Score=67.22 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeC-CCCeEEEEecceEEEccCC
Q 045826 278 RITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDR-ATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 278 ~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~-~~G~~~~i~~D~vI~a~G~ 332 (584)
.+.+.+.+.+++.|++++.++++++++ ++++.+.-. .+|+ .++.+|.||-|.|.
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~-~~i~a~~vVgADG~ 157 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGL-RTLTSSYVVGADGA 157 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCcc-EEEEeCEEEECCCC
Confidence 345556667778899999999999984 445543221 2352 25999999999994
No 350
>PRK06184 hypothetical protein; Provisional
Probab=97.03 E-value=0.0051 Score=67.66 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEE--eCCCCeEEEEecceEEEccCC
Q 045826 279 ITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTK--DRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 279 ~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~--~~~~G~~~~i~~D~vI~a~G~ 332 (584)
+.+.+.+.+.+.|++++.++++++++. +++++. ...+++ ++.+|.||-|.|.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~--~i~a~~vVgADG~ 166 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEE--TVRARYLVGADGG 166 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeE--EEEeCEEEECCCC
Confidence 445667778888999999999999853 444433 223344 4999999999994
No 351
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.02 E-value=0.001 Score=72.79 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=61.1
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEEEE
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECYKI 136 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~~i 136 (584)
.++|+|||+|.+|+++|..|++.|++|+++|+++. .....+.+.+++.|+. +..+.-..
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~------------------~~~~~~~~~l~~~gv~--~~~~~~~~- 74 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD------------------ERHRALAAILEALGAT--VRLGPGPT- 74 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------------------hhhHHHHHHHHHcCCE--EEECCCcc-
Confidence 56899999999999999999999999999997642 1122344556666743 32221000
Q ss_pred ecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCCCCCcccccccc
Q 045826 137 DAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFNTPGVVEHAHFL 189 (584)
Q Consensus 137 d~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ipG~~~~~~~~ 189 (584)
....+|.+|+++|..|+.+-+....+....+
T Consensus 75 ----------------------~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 75 ----------------------LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred ----------------------ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 0456899999999988876554444433333
No 352
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.01 E-value=0.00079 Score=74.01 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=35.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~ 95 (584)
..+||||||||..|+++|+.|+..|++|+|||+++...++
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT 44 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 3589999999999999999999999999999998654443
No 353
>PTZ00367 squalene epoxidase; Provisional
Probab=97.00 E-value=0.00071 Score=74.88 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=32.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
..+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46799999999999999999999999999999875
No 354
>PLN02676 polyamine oxidase
Probab=96.97 E-value=0.00078 Score=73.55 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=37.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCC-eEEEEcCCCCCCCCCc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSF-EVQVVSPRNYFAFTPL 97 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~-~V~lid~~~~~~~~p~ 97 (584)
..++|+|||||++||++|++|++.|. +|+|+|+++..++...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~ 67 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMR 67 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcce
Confidence 35799999999999999999999998 6999999998888644
No 355
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.95 E-value=0.006 Score=64.81 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=35.9
Q ss_pred HHHHHHHHHhC-CcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 280 TASAEEKFKRD-GIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 280 ~~~~~~~L~~~-GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
.+.+.+.+.+. +|+++.++.+++++. +++.+.. .+|++ +.+|.||.|.|.
T Consensus 112 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vV~AdG~ 164 (396)
T PRK08163 112 HLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFD-QQGNR--WTGDALIGCDGV 164 (396)
T ss_pred HHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEE-cCCCE--EecCEEEECCCc
Confidence 34455555555 599999999999853 4465544 34664 899999999994
No 356
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.95 E-value=0.00077 Score=72.79 Aligned_cols=56 Identities=27% Similarity=0.248 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEcC--C----eEEEEeCCCCeEEEEecceEEEccCC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLSD--K----EISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~----~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
...+.+.+.+.+++.||+++++++++++.. + ++.+.+ .+|+...+.++.||+|+|-
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCC
Confidence 356777888889999999999999999853 3 244443 3455445889999999994
No 357
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.94 E-value=0.0072 Score=64.34 Aligned_cols=53 Identities=17% Similarity=0.359 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
..+.+.+.+.+.+.||+++.+++|++++ ++.+.+.. .+|+. +.+|.||.|.|.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~-~~g~~--~~ad~vI~AdG~ 165 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTL-SDGSV--LEARLLVAADGA 165 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEE-CCCCE--EEeCEEEEcCCC
Confidence 4556667777888899999999999985 34455543 34664 899999999995
No 358
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.94 E-value=0.00098 Score=73.23 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=34.7
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFA 93 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~ 93 (584)
..+.||||||||+.|+++|+.|++.|++|+|||+++...
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~ 42 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQ 42 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 345899999999999999999999999999999996443
No 359
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.93 E-value=0.0016 Score=69.90 Aligned_cols=90 Identities=14% Similarity=0.239 Sum_probs=59.0
Q ss_pred ccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccc-------cc---HHHHHHHHHHHHhC
Q 045826 221 KILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM-------FD---KRITASAEEKFKRD 290 (584)
Q Consensus 221 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-------~~---~~~~~~~~~~L~~~ 290 (584)
..++|+|||+||+|+.+|..+... .+.+|+++++.+.+... .. ..+.+.+.+.+...
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-------------~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~ 104 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-------------ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSP 104 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-------------cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhC
Confidence 456999999999999999987642 14799999999887531 11 23344444556667
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
+++++.|..|-. .+.+. +. ...+|.||+|+|..
T Consensus 105 ~v~f~gnv~VG~----Dvt~e-----eL-~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 105 NYRFFGNVHVGV----DLKME-----EL-RNHYNCVIFCCGAS 137 (506)
T ss_pred CeEEEeeeEecC----ccCHH-----HH-HhcCCEEEEEcCCC
Confidence 888886544321 11111 11 13689999999943
No 360
>PRK06834 hypothetical protein; Provisional
Probab=96.92 E-value=0.0073 Score=66.04 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 278 RITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 278 ~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
.+.+.+.+.+++.||+++.++++++++ ++++.+.. .+|++ +.+|.||.|.|..
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~-~~g~~--i~a~~vVgADG~~ 155 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVEL-SDGRT--LRAQYLVGCDGGR 155 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCEEEEecCCC
Confidence 344556667788899999999999985 34565543 34654 9999999999953
No 361
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.88 E-value=0.01 Score=63.05 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
..+.+.+.+.+++.||+++.+++|++++ ++++.+.. .+|++ +.+|.||.|.|..
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~a~~vV~AdG~~ 168 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRL-DDGRR--LEAALAIAADGAA 168 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEE-CCCCE--EEeCEEEEecCCC
Confidence 3455666677788899999999999985 34455443 34664 8999999999953
No 362
>PRK07190 hypothetical protein; Provisional
Probab=96.88 E-value=0.01 Score=64.95 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 279 ITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 279 ~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
+.+.+.+.+++.||+++.+++|++++ ++++++.. .+|++ +.++.||.|.|.
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~-~~g~~--v~a~~vVgADG~ 163 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTL-SNGER--IQSRYVIGADGS 163 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEE-CCCcE--EEeCEEEECCCC
Confidence 34455567788899999999999985 45555443 33654 999999999994
No 363
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.88 E-value=0.00098 Score=75.13 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=32.6
Q ss_pred CCCeEEEECCcHHHHHHHHhccc-CCCeEEEEcCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKS-NSFEVQVVSPRNY 91 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~-~g~~V~lid~~~~ 91 (584)
...+|+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 36799999999999999999999 5999999998854
No 364
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.87 E-value=0.0076 Score=63.78 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCC-cEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 278 RITASAEEKFKRDG-IDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 278 ~~~~~~~~~L~~~G-V~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
.+.+.+.+.+++.| |+++ ++.+++++ ++++.+.. .+|++ +.+|.||.|.|.
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~adG~ 165 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTL-ADGQV--LRADLVVGADGA 165 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEE-CCCCE--EEeeEEEEeCCC
Confidence 44555667777777 9999 88999884 34555543 33654 999999999995
No 365
>PLN02697 lycopene epsilon cyclase
Probab=96.87 E-value=0.007 Score=66.45 Aligned_cols=95 Identities=18% Similarity=0.341 Sum_probs=62.0
Q ss_pred ceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccc-------------------------------
Q 045826 223 LHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHI------------------------------- 271 (584)
Q Consensus 223 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i------------------------------- 271 (584)
..|+|||||++|+-+|..+++.+ .+|.++++...+
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~G--------------l~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~ 174 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLG--------------LNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYL 174 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC--------------CcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEe
Confidence 38999999999999999988754 344444332111
Q ss_pred -------cc----cc-cHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 272 -------LN----MF-DKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 272 -------l~----~~-~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
+. .+ ...+.+.+.+.+.+.|+++ .+++|++++ ++++.+....+|.+ +.++.||.|+|...
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~--i~A~lVI~AdG~~S 248 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRV--IPCRLATVASGAAS 248 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcE--EECCEEEECCCcCh
Confidence 00 01 1233455666677789998 677898885 34433322234654 99999999999655
No 366
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.85 E-value=0.0035 Score=61.38 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=30.5
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCC------CeEEEEcCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNS------FEVQVVSPR 89 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g------~~V~lid~~ 89 (584)
...++|+|||||..|+++|++|.+++ .+|||||..
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 34589999999999999999999655 789999965
No 367
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.85 E-value=0.0069 Score=64.77 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhC-CcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 278 RITASAEEKFKRD-GIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 278 ~~~~~~~~~L~~~-GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
.+.+.+.+.+.+. ||+++.++++++++. +++.+....+++..++.+|+||.|.|.
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~ 179 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGA 179 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCC
Confidence 3444555555554 799999999999853 444443322233235999999999994
No 368
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.85 E-value=0.0011 Score=69.38 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=35.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccCC-CeEEEEcCCCCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNS-FEVQVVSPRNYFAFTP 96 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g-~~V~lid~~~~~~~~p 96 (584)
..+|||||||.|||+||.+|.+.| .+++|+|..+..++..
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI 61 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence 458999999999999999999555 5899999999988854
No 369
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=96.84 E-value=0.00094 Score=68.32 Aligned_cols=43 Identities=28% Similarity=0.272 Sum_probs=36.1
Q ss_pred CCCCeEEEECCcHHHHHHHHhcc------cCCCeEEEEcCCCCCCCCCc
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILK------SNSFEVQVVSPRNYFAFTPL 97 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~------~~g~~V~lid~~~~~~~~p~ 97 (584)
....||||||||||||++|.+|. ...++|+|+|+....+.+.+
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl 122 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL 122 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee
Confidence 34679999999999999999887 35678999999988777643
No 370
>PRK09897 hypothetical protein; Provisional
Probab=96.82 E-value=0.012 Score=64.70 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=32.0
Q ss_pred HHhCC--cEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 287 FKRDG--IDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 287 L~~~G--V~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
+.+.| |.++.+++|+.++. +++.+...++|.. +.+|.||+|+|..
T Consensus 117 a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~--i~aD~VVLAtGh~ 165 (534)
T PRK09897 117 ARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPS--ETFDLAVIATGHV 165 (534)
T ss_pred HHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeE--EEcCEEEECCCCC
Confidence 34455 78888999999953 4566554333454 8999999999963
No 371
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.79 E-value=0.0014 Score=65.22 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=35.9
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~ 95 (584)
+.|++|||+|++|+.+|..|++.|.+|.|||++++.++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 468999999999999999888999999999999988874
No 372
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.76 E-value=0.0014 Score=67.65 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=33.4
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFA 93 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~ 93 (584)
+.+|||||||.+|+++|..|.+.|++|+|+|+....-
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 5789999999999999999999999999999875443
No 373
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.75 E-value=0.0029 Score=70.56 Aligned_cols=89 Identities=19% Similarity=0.335 Sum_probs=64.7
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc---------cccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN---------MFDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~---------~~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||+|++|+-+|..+++.+ .+|+++++.+.+.. .++.++.+.-.+.+++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMG--------------HAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 56889999999999999999998764 68999998776532 23445555556777889
Q ss_pred CcEEEeCCce-eEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMV-VKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V-~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
|++++.++.+ ..+..+. . ...+|.||+|+|..
T Consensus 201 Gv~~~~~~~~~~~~~~~~---------~--~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQ---------L--EGEFDAVFVAIGAQ 233 (564)
T ss_pred CCEEEeCCEECCcCCHHH---------H--HhhCCEEEEeeCCC
Confidence 9999998765 3322111 0 13479999999954
No 374
>PRK13984 putative oxidoreductase; Provisional
Probab=96.74 E-value=0.0025 Score=71.72 Aligned_cols=90 Identities=21% Similarity=0.202 Sum_probs=66.3
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-------c--cccHHHHHHHHHHHHhC
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-------N--MFDKRITASAEEKFKRD 290 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~--~~~~~~~~~~~~~L~~~ 290 (584)
..+++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. | .++.++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G--------------~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMG--------------YEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 46789999999999999999998854 7999998877542 1 13455556666788899
Q ss_pred CcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 291 GIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
||++++++.|.. .+.+.. . ...+|.||+|+|..
T Consensus 347 gv~~~~~~~v~~----~~~~~~---~---~~~yD~vilAtGa~ 379 (604)
T PRK13984 347 GVKIHLNTRVGK----DIPLEE---L---REKHDAVFLSTGFT 379 (604)
T ss_pred CcEEECCCEeCC----cCCHHH---H---HhcCCEEEEEcCcC
Confidence 999999987632 111111 1 25799999999953
No 375
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.70 E-value=0.0099 Score=63.41 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHH
Q 045826 279 ITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMD 340 (584)
Q Consensus 279 ~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 340 (584)
+.+.+.+.+++.||+++.++++++++ ++++.+.. .+|++ +.+|+||.|.|. ...+..
T Consensus 114 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~-~~g~~--~~a~~vVgAdG~--~S~vR~ 172 (405)
T PRK05714 114 VQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTL-ADGRQ--LRAPLVVAADGA--NSAVRR 172 (405)
T ss_pred HHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCEEEEecCC--CchhHH
Confidence 34455566777899999999999985 34555443 34654 999999999994 443444
No 376
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.69 E-value=0.0018 Score=71.33 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=34.7
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~ 95 (584)
...||||||+| +|++||.++++.|.+|+||||.+..+..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~ 44 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGT 44 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 35799999999 9999999999999999999998765553
No 377
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.66 E-value=0.011 Score=65.31 Aligned_cols=92 Identities=27% Similarity=0.308 Sum_probs=58.8
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCc-cc-----------------------cc------
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGD-HI-----------------------LN------ 273 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~i-----------------------l~------ 273 (584)
.|+|||||++|+++|..+++.+ .+|.|+++.. .+ +.
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G--------------~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMG--------------AKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcC--------------CcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHH
Confidence 7999999999999999999865 5666665542 11 00
Q ss_pred ------------------------cccH-HHHHHHHHHHHhC-CcEEEeCCceeEE--cCCeEEEEeCCCCeEEEEecce
Q 045826 274 ------------------------MFDK-RITASAEEKFKRD-GIDLKTGSMVVKL--SDKEISTKDRATGQISSIPYGM 325 (584)
Q Consensus 274 ------------------------~~~~-~~~~~~~~~L~~~-GV~v~~~~~V~~v--~~~~v~~~~~~~G~~~~i~~D~ 325 (584)
.++. .+...+.+.+++. |++++ ...|+++ +++.+....+.+|.. +.|+.
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~--I~Ak~ 148 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLE--FRAKA 148 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCE--EECCE
Confidence 1111 1223344555544 88885 4457776 344444333345765 99999
Q ss_pred EEEccCC
Q 045826 326 VVWSTGI 332 (584)
Q Consensus 326 vI~a~G~ 332 (584)
||.|+|.
T Consensus 149 VIlATGT 155 (618)
T PRK05192 149 VVLTTGT 155 (618)
T ss_pred EEEeeCc
Confidence 9999993
No 378
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.65 E-value=0.0022 Score=71.61 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=36.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~ 95 (584)
....||||||+|.|||+||..+++.|.+|+|+||.+..++.
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 34579999999999999999999999999999999876553
No 379
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.012 Score=63.31 Aligned_cols=136 Identities=19% Similarity=0.269 Sum_probs=79.6
Q ss_pred ceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc------------------------------
Q 045826 223 LHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL------------------------------ 272 (584)
Q Consensus 223 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il------------------------------ 272 (584)
..|+|||+|++|+-+|..|.+.+.. ++.++++.+++.
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~-------------~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~ 75 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVP-------------DFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWD 75 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCC-------------cEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCc
Confidence 4899999999999999999987632 155555443211
Q ss_pred ---ccccHHHHHHHHHHHHhCCcE--EEeCCceeEE--cCCe-EEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHH
Q 045826 273 ---NMFDKRITASAEEKFKRDGID--LKTGSMVVKL--SDKE-ISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQ 344 (584)
Q Consensus 273 ---~~~~~~~~~~~~~~L~~~GV~--v~~~~~V~~v--~~~~-v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~ 344 (584)
+.+. .+.+++...+++.++. +..++.|+.+ +.++ ......++|...++.+|.||+|||.-..|.+..+
T Consensus 76 ~~~~~~~-~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~--- 151 (443)
T COG2072 76 EAFAPFA-EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF--- 151 (443)
T ss_pred ccCCCcc-cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC---
Confidence 1122 2678888888877654 3344444444 3332 2222223344322779999999998777766554
Q ss_pred hCCc-CCCceeeCCC----CccCCCCCEEEeCccccc
Q 045826 345 IGQA-NRRVLATDEW----LRVEGCESVYALGDCATI 376 (584)
Q Consensus 345 ~~l~-~~g~i~Vd~~----l~~~~~~~VfaiGD~a~~ 376 (584)
.|++ -.|.+.=..+ ... .-++|-+||=-++.
T Consensus 152 ~G~~~f~g~~~HS~~~~~~~~~-~GKrV~VIG~GaSA 187 (443)
T COG2072 152 AGLDEFKGRILHSADWPNPEDL-RGKRVLVIGAGASA 187 (443)
T ss_pred CCccCCCceEEchhcCCCcccc-CCCeEEEECCCccH
Confidence 2332 2333221111 122 24678888877763
No 380
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.58 E-value=0.0018 Score=74.65 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=31.3
Q ss_pred CeEEEECCcHHHHHHHHhcccC--CCeEEEEcCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSN--SFEVQVVSPRNY 91 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~--g~~V~lid~~~~ 91 (584)
++|+|||||+||+++|..|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999976 899999999875
No 381
>PRK06753 hypothetical protein; Provisional
Probab=96.57 E-value=0.014 Score=61.53 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=32.3
Q ss_pred CcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHH
Q 045826 291 GIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDF 341 (584)
Q Consensus 291 GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l 341 (584)
+++++++++|++++. +++.+.. .+|++ +.+|+||-|-| ..+.+...
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~-~~g~~--~~~~~vigadG--~~S~vR~~ 157 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHF-ADGES--EAFDLCIGADG--IHSKVRQS 157 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEE-CCCCE--EecCEEEECCC--cchHHHHH
Confidence 467899999999953 4455543 34765 89999999999 45444443
No 382
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.55 E-value=0.0022 Score=65.27 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCcEEEeCCceeEE--cC--C---eEEEEeCCCC-eEEEEecceEEEccCCCCCchHHHHHHHhCC
Q 045826 279 ITASAEEKFKRDGIDLKTGSMVVKL--SD--K---EISTKDRATG-QISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ 347 (584)
Q Consensus 279 ~~~~~~~~L~~~GV~v~~~~~V~~v--~~--~---~v~~~~~~~G-~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l 347 (584)
...++...+++.|++|+++++|++| +. . +|.+.+...+ ....+.++.||+|+|.-..| .|+...++
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp---~LLl~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTP---RLLLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHH---HHHHHTTE
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCCh---hhhccccc
Confidence 4456666666669999999999999 42 2 3677765444 23457889999999943333 56666666
No 383
>PRK11445 putative oxidoreductase; Provisional
Probab=96.53 E-value=0.036 Score=57.90 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=32.7
Q ss_pred HhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 288 KRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 288 ~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
.+.||+++.++.++.++ ++++.+....+|+..++.+|.||.|.|.
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~ 155 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGA 155 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCC
Confidence 45789999999999884 3555444223465345899999999994
No 384
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.52 E-value=0.028 Score=59.85 Aligned_cols=93 Identities=23% Similarity=0.309 Sum_probs=63.3
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc------------------cc-----------
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL------------------NM----------- 274 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il------------------~~----------- 274 (584)
.|+|||+||+|.-+|..|++.+ .+|.++++++.+. +.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G--------------~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~ 70 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAG--------------LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTG 70 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcC--------------CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeee
Confidence 7999999999999999999875 3444443332210 00
Q ss_pred ---------------------c-cHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEcc
Q 045826 275 ---------------------F-DKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWST 330 (584)
Q Consensus 275 ---------------------~-~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~ 330 (584)
+ ...+-+.+.+..++.|++++.+++++.+. +++++.....++. ++.++.||.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~--e~~a~~vI~Ad 148 (396)
T COG0644 71 ARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDD--EVRAKVVIDAD 148 (396)
T ss_pred eEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCE--EEEcCEEEECC
Confidence 0 12333445667778899999999999985 4455444333233 59999999999
Q ss_pred CC
Q 045826 331 GI 332 (584)
Q Consensus 331 G~ 332 (584)
|.
T Consensus 149 G~ 150 (396)
T COG0644 149 GV 150 (396)
T ss_pred Cc
Confidence 94
No 385
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.51 E-value=0.0026 Score=70.77 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=34.4
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC--CCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN--YFAF 94 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~--~~~~ 94 (584)
..||||||+|.|||+||..+++.|.+|+||||.+ ..++
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 4799999999999999999999999999999998 4444
No 386
>PRK05868 hypothetical protein; Validated
Probab=96.50 E-value=0.029 Score=59.14 Aligned_cols=48 Identities=6% Similarity=0.189 Sum_probs=34.7
Q ss_pred hCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHH
Q 045826 289 RDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDF 341 (584)
Q Consensus 289 ~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l 341 (584)
..|++++.+++|++++ ++++++.. .+|++ +.+|+||-|-|. ...+...
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~-~dg~~--~~adlvIgADG~--~S~vR~~ 165 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTF-ERAAA--REFDLVIGADGL--HSNVRRL 165 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEE-CCCCe--EEeCEEEECCCC--CchHHHH
Confidence 3689999999999985 34555543 34665 899999999994 4444443
No 387
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.50 E-value=0.013 Score=58.26 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=32.1
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAF 94 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~ 94 (584)
+..|||||+|.|||+++..+...+-.|+|+|+...+++
T Consensus 9 lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GG 46 (477)
T KOG2404|consen 9 LSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG 46 (477)
T ss_pred CCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCC
Confidence 34799999999999999999977777999998765544
No 388
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.49 E-value=0.0033 Score=69.89 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=38.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccc
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLP 99 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~ 99 (584)
....||||||+| +|+++|..+++.|.+|+||||.+.+++...+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~ 57 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARS 57 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCc
Confidence 346899999999 89999999999999999999998887765443
No 389
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.48 E-value=0.047 Score=51.94 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=72.2
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccccc-------c---------------------
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNM-------F--------------------- 275 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~-------~--------------------- 275 (584)
.|+|||+||+|+-+|..|++.+ .+|.++++...+... |
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g--------------~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~ 84 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAG--------------LKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE 84 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHT--------------S-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E
T ss_pred CEEEECCChhHHHHHHHHHHCC--------------CeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE
Confidence 8999999999999999999865 788888766543210 0
Q ss_pred ----------cHHHHHHHHHHHHhCCcEEEeCCceeEE--cC-CeE---EEEeC---CCC---eEEEEecceEEEccCCC
Q 045826 276 ----------DKRITASAEEKFKRDGIDLKTGSMVVKL--SD-KEI---STKDR---ATG---QISSIPYGMVVWSTGIG 333 (584)
Q Consensus 276 ----------~~~~~~~~~~~L~~~GV~v~~~~~V~~v--~~-~~v---~~~~~---~~G---~~~~i~~D~vI~a~G~~ 333 (584)
..+....+.....+.|+++...+.|+.+ .+ +.| ++.-+ ..| +...+.+..||=|||..
T Consensus 85 ~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 85 EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 0111222233334489999999888887 33 333 22210 112 23469999999999953
Q ss_pred CCchHHHHHHHhCC-c------CCCc--------eeeCCCCccCCCCCEEEeCcccc
Q 045826 334 TRPVIMDFMKQIGQ-A------NRRV--------LATDEWLRVEGCESVYALGDCAT 375 (584)
Q Consensus 334 ~~p~~~~l~~~~~l-~------~~g~--------i~Vd~~l~~~~~~~VfaiGD~a~ 375 (584)
. +....+.++..+ . ..+. ..|+.+-++ +|++|++|=++.
T Consensus 165 a-~v~~~~~kk~~~~~~~~~v~Ge~~m~~~~~E~~vV~~T~eV--~PGL~v~GMa~~ 218 (230)
T PF01946_consen 165 A-EVVRVLAKKLKLLTPTGKVPGEKSMWAERGEDLVVENTREV--YPGLYVAGMAAN 218 (230)
T ss_dssp S-SSTSHHHHHHHHTTSSS-----EEB-HHHHHHHHHHCEEEE--ETTEEE-THHHH
T ss_pred h-HHHHHHHHHhhhcccccccCCCCCcCcchhHHHHHHhhccc--cCCEEEechhhH
Confidence 2 333233333322 1 1111 123333333 899999998875
No 390
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.46 E-value=0.0033 Score=69.71 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=32.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAF 94 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~ 94 (584)
...||||||+|.||++||..++ .|.+|+||||.+..+.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 4579999999999999999996 5999999999876444
No 391
>PLN03000 amine oxidase
Probab=96.45 E-value=0.0032 Score=72.00 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=38.5
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLL 98 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~ 98 (584)
..++|+|||||++|+.+|..|.+.|++|+|+|+++..++....
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 4689999999999999999999999999999999988876543
No 392
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.45 E-value=0.021 Score=60.80 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=32.1
Q ss_pred CCeEEEECCcHHHHHHHHhccc----CCCeEEEEcCCCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKS----NSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~----~g~~V~lid~~~~~~~~ 95 (584)
.++.=|||+|.|+|++|..|-+ +|-+|+++|+.+..++.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 4678899999999999999974 56789999988765543
No 393
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.43 E-value=0.021 Score=60.41 Aligned_cols=93 Identities=24% Similarity=0.322 Sum_probs=60.1
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc------------------------------
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN------------------------------ 273 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~------------------------------ 273 (584)
.|+|||+|++|.-+|..+++.+ .+|+|+++.+.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g--------------~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG--------------LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEY 66 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEE
Confidence 3899999999999999988643 45555554432110
Q ss_pred --------------cc-cHHHHHHHHHHHHhCCcEEEeCCceeEEcCC---eEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 274 --------------MF-DKRITASAEEKFKRDGIDLKTGSMVVKLSDK---EISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 274 --------------~~-~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~---~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
.. ...+.+.+.+.+.+.|++++ ..+++.++.+ .+.+.. .+|++ +.++.||.|+|..+
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~-~~g~~--~~a~~VI~A~G~~s 141 (388)
T TIGR01790 67 RFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYC-AGGQR--IQARLVIDARGFGP 141 (388)
T ss_pred ecCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEe-CCCCE--EEeCEEEECCCCch
Confidence 00 12344556666677899886 5577777533 233332 34654 99999999999543
No 394
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.43 E-value=0.003 Score=70.18 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p 96 (584)
..||||||+|.+|+++|..+++.|.+|+|||+.+..++..
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 5799999999999999999999999999999987666543
No 395
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.40 E-value=0.02 Score=60.69 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhC-CcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 278 RITASAEEKFKRD-GIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 278 ~~~~~~~~~L~~~-GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
.+.+.+.+.+++. ||+++.++++++++ ++++.+.. .+|++ +.+|+||.|.|..
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~~ 168 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTL-ADGEE--IQAKLVIGADGAN 168 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEE-CCCCE--EEeCEEEEeCCCC
Confidence 3445556666666 99999999999985 34444443 34654 8999999999953
No 396
>PRK12839 hypothetical protein; Provisional
Probab=96.39 E-value=0.0039 Score=69.43 Aligned_cols=41 Identities=22% Similarity=0.177 Sum_probs=36.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTP 96 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p 96 (584)
...||||||+|.+|+++|..+++.|.+|+|||+....++..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGAT 47 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 35799999999999999999999999999999987766543
No 397
>PRK09126 hypothetical protein; Provisional
Probab=96.33 E-value=0.024 Score=60.05 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=34.4
Q ss_pred HHHHHHH-HhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 281 ASAEEKF-KRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 281 ~~~~~~L-~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
+.+.+.+ +..|++++.+++|++++ ++.+.+.. .+|++ +.+|+||.|.|.
T Consensus 114 ~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~ 165 (392)
T PRK09126 114 RAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTL-ANGRR--LTARLLVAADSR 165 (392)
T ss_pred HHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEE-cCCCE--EEeCEEEEeCCC
Confidence 3344444 34699999999999985 34444432 34664 999999999994
No 398
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.29 E-value=0.0033 Score=67.59 Aligned_cols=92 Identities=28% Similarity=0.455 Sum_probs=25.9
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc-----------c------------------
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN-----------M------------------ 274 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~-----------~------------------ 274 (584)
.|||||||+.|+-.|...++.+ .+|.||++.+.+.. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G--------------~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~ 66 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG--------------AKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNR 66 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--------------S-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHS
T ss_pred CEEEECccHHHHHHHHHHHHCC--------------CEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHH
Confidence 3899999999999999999875 78888887765421 0
Q ss_pred --------------------ccHHH-HHHHHHHHHhCCcEEEeCCceeEEcCCe-----EEEEeCCCCeEEEEecceEEE
Q 045826 275 --------------------FDKRI-TASAEEKFKRDGIDLKTGSMVVKLSDKE-----ISTKDRATGQISSIPYGMVVW 328 (584)
Q Consensus 275 --------------------~~~~~-~~~~~~~L~~~GV~v~~~~~V~~v~~~~-----v~~~~~~~G~~~~i~~D~vI~ 328 (584)
++++. ...+.+.+++.||++++++.|.++..++ |.+.+.. | ..++.++.+|=
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~-g-~~~i~A~~~ID 144 (428)
T PF12831_consen 67 LRARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKS-G-RKEIRAKVFID 144 (428)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred Hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccc
Confidence 11111 1124455667899999999999986442 4554422 4 34699999999
Q ss_pred ccC
Q 045826 329 STG 331 (584)
Q Consensus 329 a~G 331 (584)
|||
T Consensus 145 aTG 147 (428)
T PF12831_consen 145 ATG 147 (428)
T ss_dssp ---
T ss_pred ccc
Confidence 999
No 399
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.28 E-value=0.042 Score=57.95 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHh-CCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 277 KRITASAEEKFKR-DGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 277 ~~~~~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
..+.+.+.+.+.+ .|++++.+++|++++ ++++.+.. .+|++ +.+|.||.|.|.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vV~AdG~ 160 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTL-DNGQQ--LRAKLLIAADGA 160 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEE-CCCCE--EEeeEEEEecCC
Confidence 3455566666776 499999999999984 45555543 34654 899999999994
No 400
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.28 E-value=0.0084 Score=61.49 Aligned_cols=103 Identities=21% Similarity=0.368 Sum_probs=71.2
Q ss_pred CCCeEEEECCcHHHHHHHHhcc----cCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILK----SNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEA 131 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~----~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~ 131 (584)
.++.|-|||+|+-|-.+|+.|. ..|.+|.=+=.+.+ ..+.+-++.+..+-.+-+++.|+.| .-++
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~----------nm~kiLPeyls~wt~ekir~~GV~V-~pna 414 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY----------NMEKILPEYLSQWTIEKIRKGGVDV-RPNA 414 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC----------ChhhhhHHHHHHHHHHHHHhcCcee-ccch
Confidence 3578999999999999998887 35666653333322 1233344455556666777888666 3477
Q ss_pred EEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 132 ECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 132 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
.|.++....+.+.+.-.++. ++..|.+|+|+|..||..
T Consensus 415 ~v~sv~~~~~nl~lkL~dG~--------~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 415 KVESVRKCCKNLVLKLSDGS--------ELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred hhhhhhhhccceEEEecCCC--------eeeeeeEEEEecCCCchh
Confidence 88888776666665544322 899999999999998754
No 401
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.26 E-value=0.034 Score=58.63 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCC-cEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 278 RITASAEEKFKRDG-IDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 278 ~~~~~~~~~L~~~G-V~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
.+.+.+.+.+.+.| ++++.+++|++++ ++++.+.. .+|+. +.+|+||.|.|.
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~~~~vi~adG~ 161 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTL-DDGQQ--LRARLLVGADGA 161 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEE-CCCCE--EEeeEEEEeCCC
Confidence 44555666677777 9999999999985 34455543 34765 899999999995
No 402
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.20 E-value=0.0065 Score=70.02 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=31.9
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCc
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGD 269 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 269 (584)
..+++|+|||+||.|+.+|..|+..+ .+|+++++.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G--------------h~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG--------------HNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC--------------CeEEEEcccc
Confidence 47889999999999999999999854 8999999753
No 403
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.20 E-value=0.035 Score=58.77 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=35.4
Q ss_pred HHHHh-CCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHH
Q 045826 285 EKFKR-DGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMD 340 (584)
Q Consensus 285 ~~L~~-~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 340 (584)
+.+.+ .||+++.++++++++ ++++++.. .+|++ +.+|+||-|.| ..+.+..
T Consensus 118 ~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~-~~g~~--~~~~lvIgADG--~~S~vR~ 171 (384)
T PRK08849 118 QQFAQYPNLTLMCPEKLADLEFSAEGNRVTL-ESGAE--IEAKWVIGADG--ANSQVRQ 171 (384)
T ss_pred HHHHhCCCeEEECCCceeEEEEcCCeEEEEE-CCCCE--EEeeEEEEecC--CCchhHH
Confidence 44443 479999999999985 45554443 34765 99999999999 4554443
No 404
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.18 E-value=0.043 Score=58.56 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=34.6
Q ss_pred HHHHHHHHh-CCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 281 ASAEEKFKR-DGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 281 ~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
+.+.+.+.+ .||+++.+++|++++ ++.+.+.. .+|++ +.+|+||-|.|.
T Consensus 115 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~lvIgADG~ 166 (405)
T PRK08850 115 LALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTL-DNGQA--LTAKLVVGADGA 166 (405)
T ss_pred HHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEE-CCCCE--EEeCEEEEeCCC
Confidence 344455554 479999999999984 34444443 34765 999999999993
No 405
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.18 E-value=0.0055 Score=73.87 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=36.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~ 95 (584)
+...||||||+|.||++||..+++.|.+|+|+||.+..++.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 34679999999999999999999999999999999776553
No 406
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.15 E-value=0.0074 Score=67.50 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=37.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCc
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPL 97 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~ 97 (584)
...||||||+|.+|+++|..+++.|.+|+|||+.+..++...
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 357999999999999999999999999999999887666543
No 407
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.14 E-value=0.0063 Score=62.91 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=33.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCC--CeEEEEcCCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNS--FEVQVVSPRNYFAFT 95 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g--~~V~lid~~~~~~~~ 95 (584)
..++|+|||||.+||++|++|++.+ ..|+|+|..+..++.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 3579999999999999999999655 457789999988774
No 408
>PRK07045 putative monooxygenase; Reviewed
Probab=96.14 E-value=0.059 Score=57.06 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=38.7
Q ss_pred HHHHHHHHHHH-hCCcEEEeCCceeEEcC--CeE--EEEeCCCCeEEEEecceEEEccCCCCCchHHH
Q 045826 278 RITASAEEKFK-RDGIDLKTGSMVVKLSD--KEI--STKDRATGQISSIPYGMVVWSTGIGTRPVIMD 340 (584)
Q Consensus 278 ~~~~~~~~~L~-~~GV~v~~~~~V~~v~~--~~v--~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 340 (584)
.+.+.+.+.+. ..|++++.+++++.++. +++ .+. ..+|++ +.+|+||-|.| ....+..
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~-~~~g~~--~~~~~vIgADG--~~S~vR~ 169 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVT-LSDGER--VAPTVLVGADG--ARSMIRD 169 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEE-eCCCCE--EECCEEEECCC--CChHHHH
Confidence 34445555554 35899999999999853 332 232 244764 89999999999 4544444
No 409
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.13 E-value=0.048 Score=60.04 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCcEEEeCCceeEEcC--Ce---EEEEeCCCCeEEEEecceEEEccC
Q 045826 278 RITASAEEKFKRDGIDLKTGSMVVKLSD--KE---ISTKDRATGQISSIPYGMVVWSTG 331 (584)
Q Consensus 278 ~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~---v~~~~~~~G~~~~i~~D~vI~a~G 331 (584)
.+.+.+.+.+++.||++++++.++++.. +. +.+.. .+|+..++.++.||+|+|
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~-~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKI-NGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEe-CCCeEEEEecCeEEEeCC
Confidence 3455666777888999999999999853 32 33433 334545699999999998
No 410
>PLN02976 amine oxidase
Probab=96.09 E-value=0.006 Score=72.43 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=36.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~ 95 (584)
..++|+|||||++|+++|..|.+.|++|+|+|+++..++.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 4579999999999999999999999999999999887775
No 411
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.02 E-value=0.046 Score=60.16 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=37.9
Q ss_pred HHHHHHHhCCcEEEeCCceeEEcC--Ce--EEEEeCCCCeEEEEecceEEEccCCCCC
Q 045826 282 SAEEKFKRDGIDLKTGSMVVKLSD--KE--ISTKDRATGQISSIPYGMVVWSTGIGTR 335 (584)
Q Consensus 282 ~~~~~L~~~GV~v~~~~~V~~v~~--~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 335 (584)
.+.+..++.|++++.+++|+++.. +. +.+.+..+|+..++.++.||.|+|....
T Consensus 160 ~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 160 LNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 344556788999999999999853 32 3334333465456999999999995443
No 412
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.00 E-value=0.053 Score=57.53 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeC-----CCCeEEEEecceEEEccCC
Q 045826 279 ITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDR-----ATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 279 ~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~-----~~G~~~~i~~D~vI~a~G~ 332 (584)
+.+.+.+.+.+.|++++.+ .++++. ++.+.+... .+|+..++.+|.||-|.|.
T Consensus 94 fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~ 153 (388)
T TIGR02023 94 FDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGA 153 (388)
T ss_pred HHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCC
Confidence 3345566667789999765 588774 333333221 1233335999999999994
No 413
>PRK07538 hypothetical protein; Provisional
Probab=95.99 E-value=0.031 Score=59.82 Aligned_cols=52 Identities=23% Similarity=0.315 Sum_probs=33.6
Q ss_pred HHHHHHHHh-CC-cEEEeCCceeEEcC--Ce--EEEEeCCCCeEEEEecceEEEccCC
Q 045826 281 ASAEEKFKR-DG-IDLKTGSMVVKLSD--KE--ISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 281 ~~~~~~L~~-~G-V~v~~~~~V~~v~~--~~--v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
+.+.+.+.+ .| +.++.++++++++. ++ +.+.+..+|+..++.+|+||-|-|.
T Consensus 106 ~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~ 163 (413)
T PRK07538 106 MLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGI 163 (413)
T ss_pred HHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCC
Confidence 344444444 46 57999999999853 33 3333322344345999999999994
No 414
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.013 Score=61.20 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=31.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPR 89 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~ 89 (584)
...++|||||||.||..+|...++-|.+.+|+..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 45789999999999999999999999999999865
No 415
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.95 E-value=0.058 Score=57.10 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhC-CcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 278 RITASAEEKFKRD-GIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 278 ~~~~~~~~~L~~~-GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
.+.+.+.+.+.+. ++. +.+++|++++ ++++.+.. .+|++ +.+|.||.|.|.
T Consensus 112 ~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~ 165 (388)
T PRK07494 112 LLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTL-ADGTT--LSARLVVGADGR 165 (388)
T ss_pred HHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEE-CCCCE--EEEeEEEEecCC
Confidence 3445555666665 466 8899999884 45565543 34654 999999999995
No 416
>PRK06996 hypothetical protein; Provisional
Probab=95.94 E-value=0.042 Score=58.53 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCC-CCeEEEEecceEEEccCC
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRA-TGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~-~G~~~~i~~D~vI~a~G~ 332 (584)
..+.+.+.+.+++.|++++.++++++++ .+++++...+ +|+ .++.+|+||-|-|.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~-~~i~a~lvIgADG~ 172 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGA-RTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcc-eEEeeeEEEECCCC
Confidence 4567778888888999999999999884 4556655322 232 24999999999993
No 417
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.94 E-value=0.05 Score=57.35 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhC-CcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHH
Q 045826 277 KRITASAEEKFKRD-GIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMD 340 (584)
Q Consensus 277 ~~~~~~~~~~L~~~-GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 340 (584)
..+.+.+.+.+.+. +++++.+++++++. ++++.+.. +++ + +.+|+||-|-| ....+..
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~-~~~-~--~~adlvIgADG--~~S~vR~ 164 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKF-DDK-Q--IKCNLLIICDG--ANSKVRS 164 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEE-cCC-E--EeeCEEEEeCC--CCchhHH
Confidence 34455566666665 49999999999984 44555443 334 3 99999999999 4544433
No 418
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=95.92 E-value=0.0074 Score=60.31 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccC
Q 045826 276 DKRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTG 331 (584)
Q Consensus 276 ~~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G 331 (584)
.-++.+.+.+.++..|.-++++-+|...+ .+.|+-..+..+....+.+|..|+|+|
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsG 314 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASG 314 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecc
Confidence 45678889999999999999999998874 455554443335444577999999999
No 419
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.87 E-value=0.018 Score=59.82 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=28.3
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCC--CeEEEEcCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNS--FEVQVVSPRNY 91 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g--~~V~lid~~~~ 91 (584)
...++|+|||||.++..++..|.+.+ .+|++|-|++.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 45689999999999999999998544 58999998864
No 420
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=95.83 E-value=0.07 Score=56.29 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=61.0
Q ss_pred EEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccc--cc---------c---c---------------
Q 045826 225 FVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHI--LN---------M---F--------------- 275 (584)
Q Consensus 225 vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i--l~---------~---~--------------- 275 (584)
|+|||+|++|.-+|..|.+.. .+.+|.+|++.+.. -+ . +
T Consensus 2 viIvGaGpAGlslA~~l~~~~------------~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADAR------------PGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcC------------CCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEe
Confidence 799999999999999994432 34677777665443 10 0 0
Q ss_pred ----------------cHHHHHHHHHHHHhCCcEEEeCCceeEEcCCeE-EEEeCCCCeEEEEecceEEEccCCCC
Q 045826 276 ----------------DKRITASAEEKFKRDGIDLKTGSMVVKLSDKEI-STKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 276 ----------------~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~v-~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
...+.+.+.+.+...| .+..+++|++|+.++. ....+++|++ +.++.||-|.|...
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~--i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRT--IRARVVVDARGPSS 142 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCE--EEeeEEEECCCccc
Confidence 1223344455556334 5677889999965542 2222345775 99999999999543
No 421
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.81 E-value=0.022 Score=60.33 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=30.0
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccc
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHI 271 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i 271 (584)
+|+|||||++|+|+|..|++.+ .+|+|+++.+..
T Consensus 4 dVvVIGGGlAGleAAlaLAr~G--------------l~V~LiE~rp~~ 37 (436)
T PRK05335 4 PVNVIGAGLAGSEAAWQLAKRG--------------VPVELYEMRPVK 37 (436)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CcEEEEEccCcc
Confidence 8999999999999999999865 799999876654
No 422
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.81 E-value=0.036 Score=61.32 Aligned_cols=127 Identities=21% Similarity=0.373 Sum_probs=82.9
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-------ccc-----cHHHHHHHHHHHHhCC
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL-------NMF-----DKRITASAEEKFKRDG 291 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il-------~~~-----~~~~~~~~~~~L~~~G 291 (584)
+++|||.|..|.-+..++.+... ....||++-..+++- +-+ -.++.-.-.++.+++|
T Consensus 5 klvvvGnGmag~r~iEell~~~~-----------~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~ 73 (793)
T COG1251 5 KLVIIGNGMAGHRTIEELLESAP-----------DLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENG 73 (793)
T ss_pred eEEEEecccchhhHHHHHHhcCc-----------ccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcC
Confidence 89999999999999998887331 246788876655431 111 1233333456778999
Q ss_pred cEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHHHHHhCC-cCCCceeeCCCCccCCCCCEEEe
Q 045826 292 IDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDFMKQIGQ-ANRRVLATDEWLRVEGCESVYAL 370 (584)
Q Consensus 292 V~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l~~~~~l-~~~g~i~Vd~~l~~~~~~~Vfai 370 (584)
|+++++.+++.++.+.-.+.+ +.|.+ +.+|-+|+||| +.|++.. ++- +..+ +.+ +| +..+++++
T Consensus 74 i~L~~~~~v~~idr~~k~V~t-~~g~~--~~YDkLilATG--S~pfi~P----iPG~~~~~-v~~---~R--~i~D~~am 138 (793)
T COG1251 74 ITLYTGEKVIQIDRANKVVTT-DAGRT--VSYDKLIIATG--SYPFILP----IPGSDLPG-VFV---YR--TIDDVEAM 138 (793)
T ss_pred cEEEcCCeeEEeccCcceEEc-cCCcE--eecceeEEecC--ccccccC----CCCCCCCC-eeE---Ee--cHHHHHHH
Confidence 999999999999876644443 34776 99999999999 5664322 111 1111 111 22 35677888
Q ss_pred Cccccc
Q 045826 371 GDCATI 376 (584)
Q Consensus 371 GD~a~~ 376 (584)
+||+..
T Consensus 139 ~~~ar~ 144 (793)
T COG1251 139 LDCARN 144 (793)
T ss_pred HHHHhc
Confidence 888553
No 423
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=95.79 E-value=0.087 Score=56.08 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=20.3
Q ss_pred eEEEECCChhHHHHHHHHHHHH
Q 045826 224 HFVVVGGGPTGVEFAAALHDFV 245 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~ 245 (584)
+|+||||||+|.-+|..+++.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G 23 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAG 23 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCC
Confidence 7999999999999999998865
No 424
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.79 E-value=0.057 Score=57.90 Aligned_cols=102 Identities=25% Similarity=0.311 Sum_probs=66.6
Q ss_pred cceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc-----------------------------
Q 045826 222 ILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL----------------------------- 272 (584)
Q Consensus 222 ~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il----------------------------- 272 (584)
.++++|||+|++|+-.|..|.+.+ .+++++++.+.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g--------------~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~ 71 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREG--------------HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMM 71 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCC--------------CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhh
Confidence 349999999999999999998864 4555554443321
Q ss_pred -----------cc-c-c-HHHHHHHHHHHHhCCc--EEEeCCceeEEcCC--e---EEEEeCCCCeEEEEecceEEEccC
Q 045826 273 -----------NM-F-D-KRITASAEEKFKRDGI--DLKTGSMVVKLSDK--E---ISTKDRATGQISSIPYGMVVWSTG 331 (584)
Q Consensus 273 -----------~~-~-~-~~~~~~~~~~L~~~GV--~v~~~~~V~~v~~~--~---v~~~~~~~G~~~~i~~D~vI~a~G 331 (584)
+. + + .++.+++....+..++ .+..++++.+|+.. + |...+..++ ..+.-+|.|++|+|
T Consensus 72 ~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-~~~~ifd~VvVctG 150 (448)
T KOG1399|consen 72 GYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-IEEEIFDAVVVCTG 150 (448)
T ss_pred cCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-eeEEEeeEEEEccc
Confidence 00 0 1 2556777777777775 67888877777532 2 444442222 23467999999999
Q ss_pred CCCCchH
Q 045826 332 IGTRPVI 338 (584)
Q Consensus 332 ~~~~p~~ 338 (584)
--..|.+
T Consensus 151 h~~~P~~ 157 (448)
T KOG1399|consen 151 HYVEPRI 157 (448)
T ss_pred CcCCCCC
Confidence 6543544
No 425
>PRK02106 choline dehydrogenase; Validated
Probab=95.75 E-value=0.01 Score=66.19 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=32.6
Q ss_pred CCeEEEECCcHHHHHHHHhccc-CCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKS-NSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~-~g~~V~lid~~~~ 91 (584)
.+|+||||||.||+.+|.+|++ .|++|+|||+.+.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4799999999999999999998 8999999999964
No 426
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.73 E-value=0.05 Score=58.24 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=28.6
Q ss_pred CcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 291 GIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 291 GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
++.++.+++|++++ ++++.+.. .+|++ +.+|.||.|.|.
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~-~~g~~--~~ad~vVgADG~ 157 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLF-TDGTE--YRCDLLIGADGI 157 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEE-cCCCE--EEeeEEEECCCc
Confidence 45678899999985 34555543 34665 899999999994
No 427
>PRK06185 hypothetical protein; Provisional
Probab=95.72 E-value=0.11 Score=55.42 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHh-CCcEEEeCCceeEEc--CCeE---EEEeCCCCeEEEEecceEEEccCC
Q 045826 278 RITASAEEKFKR-DGIDLKTGSMVVKLS--DKEI---STKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 278 ~~~~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v---~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
.+.+.+.+.+.+ .||+++.+++++++. ++.+ .+.. .+|+ .++.+|.||.|.|.
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~-~~g~-~~i~a~~vI~AdG~ 167 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART-PDGP-GEIRADLVVGADGR 167 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc-CCCc-EEEEeCEEEECCCC
Confidence 444555566655 489999999999984 3333 3332 3353 24999999999994
No 428
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.66 E-value=0.086 Score=55.84 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=35.8
Q ss_pred HHHHHHHHHh-CCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 280 TASAEEKFKR-DGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 280 ~~~~~~~L~~-~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
.+.+.+.+.+ .|++++.+++++++. ++++.+.. .+|.. +.+|.||.|.|..
T Consensus 115 ~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~-~~g~~--~~a~~vI~AdG~~ 168 (395)
T PRK05732 115 GQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTL-DDGET--LTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEE-CCCCE--EEeCEEEEecCCC
Confidence 3444555555 489999999999985 34555543 33654 8999999999953
No 429
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.65 E-value=0.011 Score=69.62 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=32.8
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
...||||||||.||+.||..+++.|.+|+|+||.+.
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 357999999999999999999999999999999763
No 430
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=95.64 E-value=0.083 Score=58.47 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=32.6
Q ss_pred HHHHHHHHhC-CcEEEeCCceeEEc---CCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 281 ASAEEKFKRD-GIDLKTGSMVVKLS---DKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 281 ~~~~~~L~~~-GV~v~~~~~V~~v~---~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
..+.+.+++. |+.++.+ .++++. ++.+....+.+|.. +.||.||+|+|..
T Consensus 100 ~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~--I~Ad~VILATGtf 153 (617)
T TIGR00136 100 KAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLK--FRAKAVIITTGTF 153 (617)
T ss_pred HHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCE--EECCEEEEccCcc
Confidence 4455666666 8888766 465552 33443333344764 9999999999965
No 431
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.63 E-value=0.13 Score=55.62 Aligned_cols=33 Identities=30% Similarity=0.308 Sum_probs=26.3
Q ss_pred EEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcc
Q 045826 225 FVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDH 270 (584)
Q Consensus 225 vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~ 270 (584)
|+|||+|.+|+-+|..+++.+ ..+|+|+++.+.
T Consensus 2 VvVVG~G~AGl~AA~~aa~~G-------------~~~V~vlEk~~~ 34 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKKAG-------------AANVVLLEKMPV 34 (439)
T ss_pred EEEECCCHHHHHHHHHHHHcC-------------CccEEEEecCCC
Confidence 899999999999999998743 057788776554
No 432
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.50 E-value=0.012 Score=64.99 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=33.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
.+.||||||||.|||.||..++..|.+|+|+||.+.
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 467999999999999999999999999999998754
No 433
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.41 E-value=0.13 Score=58.30 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCC--cEEEeCCceeEEcCC-----e--EEEEeC---CCCeEEEEecceEEEccCCCCCchHHHH
Q 045826 279 ITASAEEKFKRDG--IDLKTGSMVVKLSDK-----E--ISTKDR---ATGQISSIPYGMVVWSTGIGTRPVIMDF 341 (584)
Q Consensus 279 ~~~~~~~~L~~~G--V~v~~~~~V~~v~~~-----~--v~~~~~---~~G~~~~i~~D~vI~a~G~~~~p~~~~l 341 (584)
+.+.+.+.+.+.| |+++.++++++++.+ . +++.+. .+|+..++.+|+||-|-| ....+...
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDG--a~S~VR~~ 215 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDG--ARSRVRKA 215 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCC--CchHHHHh
Confidence 4555667777765 578899999998532 2 344432 136444699999999999 56555543
No 434
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.40 E-value=0.16 Score=55.04 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.4
Q ss_pred eEEEECCChhHHHHHHHHHHHH
Q 045826 224 HFVVVGGGPTGVEFAAALHDFV 245 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~ 245 (584)
.|+||||||+|.-+|..|++.+
T Consensus 41 DViIVGaGPAG~~aA~~LA~~G 62 (450)
T PLN00093 41 RVAVIGGGPAGACAAETLAKGG 62 (450)
T ss_pred eEEEECCCHHHHHHHHHHHhCC
Confidence 8999999999999999998865
No 435
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.40 E-value=0.032 Score=60.45 Aligned_cols=35 Identities=34% Similarity=0.502 Sum_probs=32.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
..++|+|+|+|..|+++|..|++.|++|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35799999999999999999999999999999875
No 436
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.25 E-value=0.0081 Score=56.16 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=33.3
Q ss_pred CCeEEEECCcHHHHHHHHhcc--cCCCeEEEEcCCCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILK--SNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~--~~g~~V~lid~~~~~~~~ 95 (584)
..||||||+|.+||++|+.+. ++..+|.+||.+-..++.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG 116 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG 116 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCc
Confidence 358999999999999999998 678999999987655543
No 437
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.025 Score=56.69 Aligned_cols=107 Identities=21% Similarity=0.319 Sum_probs=72.1
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEE--EEEE
Q 045826 54 EFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQ--FKEA 131 (584)
Q Consensus 54 ~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~--~~~~ 131 (584)
+..+-+-+|||||+.+|.||-.|...|++||+.=|+--+-+ ..+++...+.+.+..+|+.+. ++..
T Consensus 195 ~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG------------FDqdmae~v~~~m~~~Gikf~~~~vp~ 262 (503)
T KOG4716|consen 195 PYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG------------FDQDMAELVAEHMEERGIKFLRKTVPE 262 (503)
T ss_pred cCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc------------ccHHHHHHHHHHHHHhCCceeecccce
Confidence 34566899999999999999999999999999877632111 123567778888888885431 2334
Q ss_pred EEEEEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCCCCCCC
Q 045826 132 ECYKIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTF 177 (584)
Q Consensus 132 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~ 177 (584)
.|+.++...-.|...+.. +.++.+-.||.++.|.|..+...
T Consensus 263 ~Veq~~~g~l~v~~k~t~-----t~~~~~~~ydTVl~AiGR~~~~~ 303 (503)
T KOG4716|consen 263 RVEQIDDGKLRVFYKNTN-----TGEEGEEEYDTVLWAIGRKALTD 303 (503)
T ss_pred eeeeccCCcEEEEeeccc-----ccccccchhhhhhhhhccccchh
Confidence 566666554334333322 11223678999999999876443
No 438
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.097 Score=49.65 Aligned_cols=106 Identities=15% Similarity=0.140 Sum_probs=63.2
Q ss_pred eEEEECCChhHHHHHHHHHHHH-HHhHhhhC--cCCCCCcEEEE---ecCCccccc-cccHHHHHHHHHHHHhCCcEEEe
Q 045826 224 HFVVVGGGPTGVEFAAALHDFV-IDDLSKLY--PSLKEFTRITL---LEAGDHILN-MFDKRITASAEEKFKRDGIDLKT 296 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~-~~~~~~~~--~~~~~~~~V~l---v~~~~~il~-~~~~~~~~~~~~~L~~~GV~v~~ 296 (584)
+|+|||+||.+.-.|..+++.- +..+.+-+ ..+.++-+.+- |+--|.+-. -..+++.+.+.+.-++.|.++++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~t 89 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIIT 89 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeee
Confidence 8999999999999998887742 11111100 01111222221 221121111 13578889999999999999988
Q ss_pred CCceeEEcCCe--EEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 297 GSMVVKLSDKE--ISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 297 ~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
.+ |..++-.+ .++.. + .+. +.+|.||+|||...
T Consensus 90 Et-Vskv~~sskpF~l~t-d-~~~--v~~~avI~atGAsA 124 (322)
T KOG0404|consen 90 ET-VSKVDLSSKPFKLWT-D-ARP--VTADAVILATGASA 124 (322)
T ss_pred ee-hhhccccCCCeEEEe-c-CCc--eeeeeEEEecccce
Confidence 64 66665443 33332 1 333 89999999999533
No 439
>PLN02985 squalene monooxygenase
Probab=95.05 E-value=0.2 Score=55.19 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhC-CcEEEeCCceeEE-cCCe----EEEEeCCCCeEEEEecceEEEccCCCCCchHHH
Q 045826 278 RITASAEEKFKRD-GIDLKTGSMVVKL-SDKE----ISTKDRATGQISSIPYGMVVWSTGIGTRPVIMD 340 (584)
Q Consensus 278 ~~~~~~~~~L~~~-GV~v~~~~~V~~v-~~~~----v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~ 340 (584)
.+.+.+.+.+.+. ||+++.++ ++++ +.++ |++.. .+|++.++.+|+||.|.| ....+..
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~gt-vv~li~~~~~v~gV~~~~-~dG~~~~~~AdLVVgADG--~~S~vR~ 212 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEGT-VKSLIEEKGVIKGVTYKN-SAGEETTALAPLTVVCDG--CYSNLRR 212 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEeee-EEEEEEcCCEEEEEEEEc-CCCCEEEEECCEEEECCC--CchHHHH
Confidence 4445556666554 79988765 5544 3332 44433 346655678999999999 4444433
No 440
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.04 E-value=0.027 Score=58.67 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=42.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCcccccccc
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNG 104 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g 104 (584)
...+|+||||+|+.||.+|.+|++.|.+|+++|++..+++......+..|
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpG 61 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPG 61 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccc
Confidence 45689999999999999999999999999999999777776555555544
No 441
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.93 E-value=0.24 Score=45.15 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=24.0
Q ss_pred EEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecC
Q 045826 226 VVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEA 267 (584)
Q Consensus 226 vVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~ 267 (584)
+|||+|++|+-++..|.+.. ......+|+|+++
T Consensus 1 AIIG~G~~G~~~l~~L~~~~---------~~~~~~~I~vfd~ 33 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA---------DPKPPLEITVFDP 33 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc---------CCCCCCEEEEEcC
Confidence 59999999999999998763 0113466777655
No 442
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=94.91 E-value=0.025 Score=62.74 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=30.5
Q ss_pred eEEEECCcHHHHHHHHhcccCC-CeEEEEcCCCC
Q 045826 59 KVVVLGTGWAGTTFLKILKSNS-FEVQVVSPRNY 91 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g-~~V~lid~~~~ 91 (584)
|+||||||.||..+|.+|++.+ ++|.|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6899999999999999999877 79999999864
No 443
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.89 E-value=0.094 Score=51.35 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=29.0
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccc
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHI 271 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i 271 (584)
+|+|||+|..|+-+|..|...+ .+|++++++..+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG--------------~~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAG--------------REVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcC--------------cEEEEEEcCCCc
Confidence 7999999999999999999865 688888776544
No 444
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=94.88 E-value=0.03 Score=61.97 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=33.8
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
...+|+||||+|.+|-.+|.+|...|++|+|+|....
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 3468999999999999999999999999999998853
No 445
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=94.85 E-value=0.032 Score=55.84 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=33.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
...+|+|||+|.|||.+|.+|+..|.+|+++|+++.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 357999999999999999999999999999998764
No 446
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.84 E-value=0.034 Score=46.92 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=31.4
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
+.++|+|||||..|..-+..|.+.|.+|+||.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 46899999999999999999999999999999873
No 447
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.83 E-value=0.044 Score=54.88 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=31.3
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
...|-|||||.||-.+|+++++.|..|.|+|-++
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 4679999999999999999999999999999664
No 448
>PRK07121 hypothetical protein; Validated
Probab=94.60 E-value=0.28 Score=53.80 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCcEEEeCCceeEEc--CC-e---EEEEeCCCCeEEEEec-ceEEEccCC
Q 045826 278 RITASAEEKFKRDGIDLKTGSMVVKLS--DK-E---ISTKDRATGQISSIPY-GMVVWSTGI 332 (584)
Q Consensus 278 ~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~-~---v~~~~~~~G~~~~i~~-D~vI~a~G~ 332 (584)
.+.+.+.+.+++.|++++++++++++. ++ . |.... +|+...+.+ +.||+|+|-
T Consensus 178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR--YGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe--CCcEEEEEeCCEEEECCCC
Confidence 455566677788899999999999983 22 3 33332 344446888 999999993
No 449
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.48 E-value=0.059 Score=52.33 Aligned_cols=92 Identities=23% Similarity=0.337 Sum_probs=56.9
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCC-----
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGS----- 298 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~----- 298 (584)
+++|||||..|+-+|..|+.+. +..+|.|+..++-+-.- .-.+.+-++|++..|+=...+
T Consensus 1 kfivvgggiagvscaeqla~~~------------psa~illitass~vksv---tn~~~i~~ylekfdv~eq~~~elg~~ 65 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE------------PSAEILLITASSFVKSV---TNYQKIGQYLEKFDVKEQNCHELGPD 65 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC------------CCCcEEEEeccHHHHHH---hhHHHHHHHHHhcCccccchhhhccc
Confidence 3789999999999999998764 45789999877643211 112233445554444311100
Q ss_pred ------ceeEEcC--CeEEEEeCCCCeEEEEecceEEEccCCCCC
Q 045826 299 ------MVVKLSD--KEISTKDRATGQISSIPYGMVVWSTGIGTR 335 (584)
Q Consensus 299 ------~V~~v~~--~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~ 335 (584)
.|+.++. ..+++++ |++ +.++.+++|+|.+|.
T Consensus 66 f~~~~~~v~~~~s~ehci~t~~---g~~--~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 66 FRRFLNDVVTWDSSEHCIHTQN---GEK--LKYFKLCLCTGYKPK 105 (334)
T ss_pred HHHHHHhhhhhccccceEEecC---Cce--eeEEEEEEecCCCcc
Confidence 1222322 2355554 886 999999999996554
No 450
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.40 E-value=0.083 Score=53.39 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=67.4
Q ss_pred CCCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEE
Q 045826 54 EFKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAEC 133 (584)
Q Consensus 54 ~~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v 133 (584)
...++|+||||||+-++..|--++..|.++.|+=|.....-. ..+.+.....+.+...|++++ -+..+
T Consensus 186 ee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-----------FD~~i~~~v~~~~~~~ginvh-~~s~~ 253 (478)
T KOG0405|consen 186 EEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-----------FDEMISDLVTEHLEGRGINVH-KNSSV 253 (478)
T ss_pred hhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-----------hhHHHHHHHHHHhhhcceeec-ccccc
Confidence 456899999999999999999999999999988877643321 012334445566667776552 34555
Q ss_pred EEEecCCCE---EEEeecCccCCCCCceEEEeCCEEEEccCCCCCCCC
Q 045826 134 YKIDAEKKQ---IYCRTTEDRTCGGKEEFALDYDILVIAMGAQANTFN 178 (584)
Q Consensus 134 ~~id~~~~~---v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs~~~~~~ 178 (584)
+.+...... +....+ .....|.|+.|+|..|+.-+
T Consensus 254 ~~v~K~~~g~~~~i~~~~----------~i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 254 TKVIKTDDGLELVITSHG----------TIEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred eeeeecCCCceEEEEecc----------ccccccEEEEEecCCCCccc
Confidence 554333222 222211 14459999999999887654
No 451
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.39 E-value=0.21 Score=52.42 Aligned_cols=81 Identities=10% Similarity=0.153 Sum_probs=57.8
Q ss_pred ecCCcccccc--ccHHHHHHHHHHHHhCCcEEEeCCceeEEcCCeEEEEeCCCCeEEEEecceEEEccCCCCCchH----
Q 045826 265 LEAGDHILNM--FDKRITASAEEKFKRDGIDLKTGSMVVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVI---- 338 (584)
Q Consensus 265 v~~~~~il~~--~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~---- 338 (584)
.+...++.|. -...+.+.+...+++.||+++++++|++|++++..+....++. .+.+|.||+|+|-.+.|.+
T Consensus 72 ~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~--~~~a~~vIlAtGG~s~p~~Gs~g 149 (376)
T TIGR03862 72 VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQS--TIEADAVVLALGGASWSQLGSDG 149 (376)
T ss_pred ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCce--EEecCEEEEcCCCccccccCCCc
Confidence 4556677773 4577888999999999999999999999965544444322223 3899999999997665544
Q ss_pred --HHHHHHhCC
Q 045826 339 --MDFMKQIGQ 347 (584)
Q Consensus 339 --~~l~~~~~l 347 (584)
-.+++++|.
T Consensus 150 ~gy~la~~lGh 160 (376)
T TIGR03862 150 AWQQVLDQRGV 160 (376)
T ss_pred HHHHHHHHCCC
Confidence 234566654
No 452
>PLN02785 Protein HOTHEAD
Probab=94.31 E-value=0.05 Score=60.74 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=32.4
Q ss_pred CCCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
...+|+||||||.||+.+|.+|.+ +.+|.|||+.+.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 446899999999999999999998 699999999864
No 453
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.25 E-value=0.056 Score=51.78 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=31.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPR 89 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~ 89 (584)
.++|+|||||..|..-+..|.+.|.+|+||+++
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 579999999999999999999999999999976
No 454
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.12 E-value=0.068 Score=48.88 Aligned_cols=34 Identities=35% Similarity=0.351 Sum_probs=30.9
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPR 89 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~ 89 (584)
+.++|+|||||-.|..-+..|.+.|++|+||++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4589999999999999999999999999999754
No 455
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.02 E-value=0.07 Score=41.27 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=28.1
Q ss_pred EECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc
Q 045826 227 VVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN 273 (584)
Q Consensus 227 VVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~ 273 (584)
|||+|.+|+-+|..|.+. +.+|+++|+.+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~--------------g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--------------GYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--------------TSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHC--------------CCcEEEEecCcccCc
Confidence 899999999999999985 379999999987643
No 456
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.85 E-value=0.063 Score=49.13 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=30.2
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
+|.|||||..|.++|..|+..|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999999874
No 457
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=93.81 E-value=0.036 Score=59.69 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEEcC---Ce-EEE-EeCCCCeEEEEecceEEEccC
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKLSD---KE-IST-KDRATGQISSIPYGMVVWSTG 331 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~~---~~-v~~-~~~~~G~~~~i~~D~vI~a~G 331 (584)
..+.+.+.+.+++.|++++++++++++.. ++ +.. ....++. ++.++.||+|+|
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~--~i~ak~VIlAtG 180 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTH--RITTQALVLAAG 180 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcE--EEEcCEEEEcCC
Confidence 45677778888999999999999999842 22 332 2212233 488999999999
No 458
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.69 E-value=0.4 Score=50.98 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.6
Q ss_pred eEEEECCChhHHHHHHHHHHH
Q 045826 224 HFVVVGGGPTGVEFAAALHDF 244 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~ 244 (584)
+|+|||||++|+.+|.+|.+.
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~ 23 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKS 23 (474)
T ss_pred eEEEECCchHHHHHHHHHHhC
Confidence 899999999999999999874
No 459
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=93.66 E-value=0.21 Score=57.86 Aligned_cols=21 Identities=38% Similarity=0.797 Sum_probs=19.5
Q ss_pred eEEEECCChhHHHHHHHHHHH
Q 045826 224 HFVVVGGGPTGVEFAAALHDF 244 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~ 244 (584)
+|+|||||+.|+-+|..|++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~ 22 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLL 22 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHh
Confidence 799999999999999999875
No 460
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.26 E-value=0.11 Score=49.70 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=31.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPR 89 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~ 89 (584)
..++|+|||||-.|...+..|.+.|.+|+||++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999999999999999999864
No 461
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.25 E-value=0.047 Score=54.46 Aligned_cols=96 Identities=21% Similarity=0.356 Sum_probs=56.2
Q ss_pred ccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc--ccc---cHHHHHH--H---HHHHHhC
Q 045826 221 KILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL--NMF---DKRITAS--A---EEKFKRD 290 (584)
Q Consensus 221 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il--~~~---~~~~~~~--~---~~~L~~~ 290 (584)
+.-.|+|||||..|+-+|..+.+.. +.-+|-++++.+... |.+ ...+... - +..|.-.
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl------------~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~ 105 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKL------------GSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPK 105 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhc------------CCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccC
Confidence 3448999999999999999887654 235788887776531 211 1111000 0 0011111
Q ss_pred CcEEEeCCceeEEcCCe--EEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 291 GIDLKTGSMVVKLSDKE--ISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~~--v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
|...+. .+|++++++. |++.. |++ |.+|.+|+|+|+..
T Consensus 106 ~a~wi~-ekv~~f~P~~N~v~t~g---g~e--IsYdylviA~Giql 145 (446)
T KOG3851|consen 106 GATWIK-EKVKEFNPDKNTVVTRG---GEE--ISYDYLVIAMGIQL 145 (446)
T ss_pred CcHHHH-HHHHhcCCCcCeEEccC---CcE--EeeeeEeeeeecee
Confidence 222111 4566666554 54443 776 99999999999644
No 462
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=93.25 E-value=0.58 Score=48.15 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=54.8
Q ss_pred HhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--CeEEEEeCCCCeEEEEecceE
Q 045826 249 LSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KEISTKDRATGQISSIPYGMV 326 (584)
Q Consensus 249 ~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~v~~~~~~~G~~~~i~~D~v 326 (584)
+.+.+|.+.++..--++.+....+. +..+...+.+.+++.|++++.+++|++++. +.+....+.+| . +.+|.|
T Consensus 111 ~~~~~p~l~~~~~~g~~~~~~g~v~--p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~--~~a~~v 185 (337)
T TIGR02352 111 LRRLEPYLSGGIRGAVFYPDDAHVD--PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-D--VQADQV 185 (337)
T ss_pred HHHhCCCCCcccceEEEcCCCceEC--hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-E--EECCEE
Confidence 4445565543333344444333332 467788888999999999999999999954 44544444445 3 899999
Q ss_pred EEccCCCCC
Q 045826 327 VWSTGIGTR 335 (584)
Q Consensus 327 I~a~G~~~~ 335 (584)
|+|+|....
T Consensus 186 V~a~G~~~~ 194 (337)
T TIGR02352 186 VLAAGAWAG 194 (337)
T ss_pred EEcCChhhh
Confidence 999995443
No 463
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.14 E-value=0.1 Score=48.88 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=28.1
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
+|.|||+|.-|...|..++..|++|+|+|+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999875
No 464
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.10 E-value=0.47 Score=51.36 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=52.5
Q ss_pred ccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCce
Q 045826 221 KILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMV 300 (584)
Q Consensus 221 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V 300 (584)
++++++|+|+|.+|..+|..|++.+ .+|+++++.+. ..+ +...+.|.+.|++++.+...
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--------------~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~ 62 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--------------AKVILTDEKEE------DQL-KEALEELGELGIELVLGEYP 62 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcc
Confidence 3569999999999999999999865 79999987642 122 22335567778887665433
Q ss_pred eEEcCCeEEEEeCCCCeEEEEecceEEEccCCC
Q 045826 301 VKLSDKEISTKDRATGQISSIPYGMVVWSTGIG 333 (584)
Q Consensus 301 ~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~ 333 (584)
.+ .. -.+|+||.++|+.
T Consensus 63 ~~-------------~~---~~~d~vv~~~g~~ 79 (450)
T PRK14106 63 EE-------------FL---EGVDLVVVSPGVP 79 (450)
T ss_pred hh-------------Hh---hcCCEEEECCCCC
Confidence 21 00 2468888888853
No 465
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=93.04 E-value=0.15 Score=54.74 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.9
Q ss_pred eEEEECCChhHHHHHHHHHHHHHH
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVID 247 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~ 247 (584)
.|+|||||..|+|.|.+.++++.+
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~k 29 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAK 29 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCe
Confidence 799999999999999999998743
No 466
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.91 E-value=0.1 Score=50.90 Aligned_cols=33 Identities=18% Similarity=0.470 Sum_probs=31.1
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
++++|||+|--|.+.|..|.+.|++|++||+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999874
No 467
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.74 E-value=0.11 Score=56.45 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=30.9
Q ss_pred eEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 59 KVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 59 ~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
+|+|||.|.+|+++|+.|.+.|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998764
No 468
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.56 E-value=0.11 Score=49.05 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=27.3
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
++|.|||.|+.|+.+|..|+..|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4899999999999999999999999999998753
No 469
>PRK08401 L-aspartate oxidase; Provisional
Probab=92.45 E-value=1.2 Score=48.43 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCcEEEeCCceeEEc--CCeEEEEeCCCCeEEEEecceEEEccCCCC
Q 045826 277 KRITASAEEKFKRDGIDLKTGSMVVKLS--DKEISTKDRATGQISSIPYGMVVWSTGIGT 334 (584)
Q Consensus 277 ~~~~~~~~~~L~~~GV~v~~~~~V~~v~--~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~ 334 (584)
..+.+.+.+.+++.||+++.+ .++.+. ++.+..... +|+. +.++.||+|||-..
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~--i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGEL--LKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEE--EEeCeEEECCCcCc
Confidence 345555666677778888765 566653 233332221 2553 89999999999543
No 470
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.43 E-value=0.67 Score=48.21 Aligned_cols=34 Identities=15% Similarity=0.337 Sum_probs=26.5
Q ss_pred CeEEEECCcHHHHHHHHhcc----cCCCeEEEEcCCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILK----SNSFEVQVVSPRNY 91 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~----~~g~~V~lid~~~~ 91 (584)
..|.|||+|-++..+-+.|. ...+++..|-|++.
T Consensus 188 ~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~g 225 (436)
T COG3486 188 RSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSG 225 (436)
T ss_pred ceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCC
Confidence 34999999999999988886 33456777888753
No 471
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=92.40 E-value=0.1 Score=53.88 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=30.1
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN 273 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~ 273 (584)
.|+|||||++|+-+|..|++.+ .+|+++++.+.+.+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G--------------~~v~i~E~~~~~~~ 38 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAG--------------IDVTIIERRPDPRP 38 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--------------CEEEEEESSSSCCC
T ss_pred eEEEECCCHHHHHHHHHHHhcc--------------cccccchhcccccc
Confidence 7999999999999999999965 89999999887643
No 472
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.08 E-value=0.34 Score=48.81 Aligned_cols=96 Identities=18% Similarity=0.145 Sum_probs=62.2
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc---------------cc----cHHHHHHHH
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN---------------MF----DKRITASAE 284 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~---------------~~----~~~~~~~~~ 284 (584)
.|-|||+|..|.|.|..+++.+ +.|.|.+..+.-+. .+ -....-.++
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~G--------------v~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk 70 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRG--------------VPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLK 70 (439)
T ss_pred ceEEEcccccccHHHHHHHHcC--------------CcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHH
Confidence 7999999999999999999865 78888877654221 11 112233466
Q ss_pred HHHHhCCcEEEeCCceeEEcCCe----------------------EEEEeCCCCeEEEEe-cceEEEccCCCCCc
Q 045826 285 EKFKRDGIDLKTGSMVVKLSDKE----------------------ISTKDRATGQISSIP-YGMVVWSTGIGTRP 336 (584)
Q Consensus 285 ~~L~~~GV~v~~~~~V~~v~~~~----------------------v~~~~~~~G~~~~i~-~D~vI~a~G~~~~p 336 (584)
+.++..|--++......+|-.++ |++.. ++..+++ =+.+|+|||--.+|
T Consensus 71 ~EMR~lgSlii~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vir---eEvt~iP~dg~~vIATGPLTs~ 142 (439)
T COG1206 71 AEMRLLGSLIIEAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIR---EEVTEIPPDGITVIATGPLTSD 142 (439)
T ss_pred HHHHHhhhHHhhhhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEc---cccccCCCCCcEEEecCCCCCH
Confidence 77777776666555555543332 34443 5555576 57889999944444
No 473
>PRK06475 salicylate hydroxylase; Provisional
Probab=92.02 E-value=0.18 Score=53.73 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=30.8
Q ss_pred ceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccc
Q 045826 223 LHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHI 271 (584)
Q Consensus 223 ~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i 271 (584)
++|+|||||++|+-+|..|++.+ .+|+++++.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G--------------~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG--------------WAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCCcc
Confidence 48999999999999999998754 799999988764
No 474
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=0.5 Score=47.90 Aligned_cols=108 Identities=21% Similarity=0.241 Sum_probs=68.4
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHH--hHhhhCcCC-CCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEe
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVID--DLSKLYPSL-KEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKT 296 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~--~~~~~~~~~-~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~ 296 (584)
+..-.|+||||||.|.-.|-..++-+-. .+.+.|... .+-..| +---.....-.+++...++++.++..|+++.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~I---ENfIsv~~teGpkl~~ale~Hv~~Y~vDimn 285 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGI---ENFISVPETEGPKLAAALEAHVKQYDVDVMN 285 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccch---hheeccccccchHHHHHHHHHHhhcCchhhh
Confidence 3445899999999999998888775411 122223221 000011 0000011234688999999999999999998
Q ss_pred CCceeEEcC----CeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 297 GSMVVKLSD----KEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 297 ~~~V~~v~~----~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
..+.+.+++ ++..-....+|-. +.+..+|++||.
T Consensus 286 ~qra~~l~~a~~~~~l~ev~l~nGav--LkaktvIlstGA 323 (520)
T COG3634 286 LQRASKLEPAAVEGGLIEVELANGAV--LKARTVILATGA 323 (520)
T ss_pred hhhhhcceecCCCCccEEEEecCCce--eccceEEEecCc
Confidence 888888765 3322222234876 999999999994
No 475
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=91.88 E-value=0.7 Score=46.45 Aligned_cols=41 Identities=29% Similarity=0.272 Sum_probs=31.5
Q ss_pred CcEEEeCCceeEEcCC-----eEEEEeCCCCeEEEEecceEEEccCC
Q 045826 291 GIDLKTGSMVVKLSDK-----EISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 291 GV~v~~~~~V~~v~~~-----~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
-+++.++++|+.+.++ +|++.+ .+|+...+-+|.||+|+|-
T Consensus 159 ~~ki~~nskvv~il~n~gkVsgVeymd-~sgek~~~~~~~VVlatGG 204 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNGKVSGVEYMD-ASGEKSKIIGDAVVLATGG 204 (477)
T ss_pred HHhhhhcceeeeeecCCCeEEEEEEEc-CCCCccceecCceEEecCC
Confidence 4789999999999643 366665 4466667889999999983
No 476
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=91.87 E-value=0.18 Score=53.47 Aligned_cols=55 Identities=29% Similarity=0.453 Sum_probs=42.6
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCC-cccccc-ccHHHHHHHHHHHHhCCc
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAG-DHILNM-FDKRITASAEEKFKRDGI 292 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~il~~-~~~~~~~~~~~~L~~~GV 292 (584)
.|+|||||++|.-+|..|++.+ .+|+|+++. +.+.+. -.-.+.....+.|++.|+
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~G--------------~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 4 DVAIVGAGPAGLALALALARAG--------------LDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 8999999999999999999865 899999998 344332 223344556688888887
No 477
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.83 E-value=0.22 Score=44.29 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=31.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCe-EEEEcCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFE-VQVVSPR 89 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~-V~lid~~ 89 (584)
..++|+|||+|-+|-.++..|...|++ |+|+.|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 468999999999999999999988987 9999986
No 478
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=91.81 E-value=0.77 Score=50.71 Aligned_cols=85 Identities=20% Similarity=0.166 Sum_probs=55.4
Q ss_pred hHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEcC--Ce---EEEEeCCCCeEEEEe
Q 045826 248 DLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLSD--KE---ISTKDRATGQISSIP 322 (584)
Q Consensus 248 ~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~~--~~---v~~~~~~~G~~~~i~ 322 (584)
.+.+.+|.+.++..--+... +..+ -+..+...+.+...+.|++++++++|+++.. +. +++.+..+|+..++.
T Consensus 102 e~~~~~P~l~~~~~ga~~~~-dg~v--dp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~ 178 (516)
T TIGR03377 102 EALRLEPNLNPDLIGAVKVP-DGTV--DPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIE 178 (516)
T ss_pred HHHHHCCCCChhheEEEEeC-CcEE--CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEE
Confidence 34455666654433333333 2222 2456666777888899999999999999953 43 444444456544699
Q ss_pred cceEEEccCCCCC
Q 045826 323 YGMVVWSTGIGTR 335 (584)
Q Consensus 323 ~D~vI~a~G~~~~ 335 (584)
++.||.|+|....
T Consensus 179 a~~VVnAaG~wa~ 191 (516)
T TIGR03377 179 AQVVINAAGIWAG 191 (516)
T ss_pred cCEEEECCCcchH
Confidence 9999999995444
No 479
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=91.76 E-value=0.32 Score=52.64 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=31.2
Q ss_pred CCCCeEEEECCcHHHHHHHHhccc--CCCeEEEEcCCCCCCC
Q 045826 55 FKKKKVVVLGTGWAGTTFLKILKS--NSFEVQVVSPRNYFAF 94 (584)
Q Consensus 55 ~~~~~VVIVGgG~AGl~aA~~L~~--~g~~V~lid~~~~~~~ 94 (584)
...++++|||||.+|-..+..++. ...-|-.+|.++...+
T Consensus 114 ~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g 155 (588)
T COG1086 114 DNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTG 155 (588)
T ss_pred cCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcC
Confidence 346799999999999999999983 2345788898875444
No 480
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.73 E-value=0.17 Score=55.31 Aligned_cols=39 Identities=33% Similarity=0.491 Sum_probs=34.1
Q ss_pred ccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc
Q 045826 221 KILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN 273 (584)
Q Consensus 221 ~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~ 273 (584)
+.++|+|||+|.+|+-+|..|.+++ .+|+++++.+++.+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G--------------~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFG--------------FDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcC--------------CceEEEeccCCcCc
Confidence 4559999999999999999999986 78999999888743
No 481
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.66 E-value=0.22 Score=44.99 Aligned_cols=73 Identities=21% Similarity=0.354 Sum_probs=0.0
Q ss_pred EEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCceeEEc
Q 045826 225 FVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSMVVKLS 304 (584)
Q Consensus 225 vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~V~~v~ 304 (584)
|+|+|+|.+|.-+|..|+..+ .+|+++.+.++. +.+++.|+.+.... -....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--------------~~V~l~~r~~~~-------------~~~~~~g~~~~~~~-~~~~~ 52 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--------------HDVTLVSRSPRL-------------EAIKEQGLTITGPD-GDETV 52 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--------------CEEEEEESHHHH-------------HHHHHHCEEEEETT-EEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCC--------------CceEEEEccccH-------------HhhhheeEEEEecc-cceec
Q ss_pred CCeEEEEeCCCC--eEEEEecceEEEcc
Q 045826 305 DKEISTKDRATG--QISSIPYGMVVWST 330 (584)
Q Consensus 305 ~~~v~~~~~~~G--~~~~i~~D~vI~a~ 330 (584)
........ - .. -++|.||+|+
T Consensus 53 ~~~~~~~~---~~~~~--~~~D~viv~v 75 (151)
T PF02558_consen 53 QPPIVISA---PSADA--GPYDLVIVAV 75 (151)
T ss_dssp EEEEEESS---HGHHH--STESEEEE-S
T ss_pred ccccccCc---chhcc--CCCcEEEEEe
No 482
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=91.25 E-value=0.23 Score=51.45 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.3
Q ss_pred CCCeEEEECCcHHHHHHHHhccc----CCCeEEEEcCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKS----NSFEVQVVSPR 89 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~----~g~~V~lid~~ 89 (584)
..++|||||||+.|++.|..|.. +..+|.|+|-.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 37899999999999999999983 35689999977
No 483
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.24 E-value=0.26 Score=45.65 Aligned_cols=34 Identities=38% Similarity=0.387 Sum_probs=29.3
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPR 89 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~ 89 (584)
.+.+|||+|+|.+|..|+..|...|++++++|.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 4579999999999999999999999999999975
No 484
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=90.98 E-value=1.4 Score=53.54 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=33.9
Q ss_pred HHHHHHHh---CCcEEEeCCceeEEcCC-----------eE---EEEeC--CCCeEEEEecceEEEccCC
Q 045826 282 SAEEKFKR---DGIDLKTGSMVVKLSDK-----------EI---STKDR--ATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 282 ~~~~~L~~---~GV~v~~~~~V~~v~~~-----------~v---~~~~~--~~G~~~~i~~D~vI~a~G~ 332 (584)
.+.+.+++ .||+|+++++++++..+ .| ...+. .+|+...+.++.||+|||-
T Consensus 549 ~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGG 618 (1167)
T PTZ00306 549 TLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGG 618 (1167)
T ss_pred HHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCC
Confidence 34444443 48999999999987421 23 33321 1476667999999999993
No 485
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.85 E-value=0.13 Score=54.98 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=35.4
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCCCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNYFAFT 95 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~~~~~ 95 (584)
..||+|||||..|--||.-.+-+|+++.|+|++++..++
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 479999999999999999999999999999999876654
No 486
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.84 E-value=0.26 Score=49.88 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=31.6
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
.++|.|||+|.-|...|..++..|++|+++|+++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4589999999999999999999999999999875
No 487
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.73 E-value=0.31 Score=50.01 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=32.1
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
..++|.|||+|.-|...|..++..|++|+++|+.+
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 35789999999999999999999999999999875
No 488
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.68 E-value=0.25 Score=50.66 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=30.9
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
++|.|||+|.-|.+.|..|+..|++|+++|+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999875
No 489
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=90.65 E-value=0.7 Score=48.85 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=22.1
Q ss_pred eEEEECCChhHHHHHHHHHHHHHH
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVID 247 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~ 247 (584)
.|+|||||..|+|.|.+.++.+..
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~ 53 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGAR 53 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCc
Confidence 899999999999999999998754
No 490
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=90.62 E-value=0.53 Score=48.37 Aligned_cols=86 Identities=19% Similarity=0.192 Sum_probs=57.7
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccc--------c--ccHHHHHHHHHHHHhCCcE
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILN--------M--FDKRITASAEEKFKRDGID 293 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~--------~--~~~~~~~~~~~~L~~~GV~ 293 (584)
+|.|||+||+|.-.|..|.+.- ++++|++++..+.+.. . .-+.+.+...+.++.....
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~------------~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfs 89 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRH------------PNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFS 89 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcC------------CCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceE
Confidence 9999999999999998876531 4589999999887643 2 1233445566777777777
Q ss_pred EEeCCce-eEEcCCeEEEEeCCCCeEEEEecceEEEccCC
Q 045826 294 LKTGSMV-VKLSDKEISTKDRATGQISSIPYGMVVWSTGI 332 (584)
Q Consensus 294 v~~~~~V-~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~ 332 (584)
+..|..| ..+ .+.+ .+-.+|.||+|.|.
T Consensus 90 f~gNv~vG~dv-----sl~e------L~~~ydavvLaYGa 118 (468)
T KOG1800|consen 90 FFGNVKVGRDV-----SLKE------LTDNYDAVVLAYGA 118 (468)
T ss_pred EEecceecccc-----cHHH------HhhcccEEEEEecC
Confidence 7777554 222 2211 11357788888874
No 491
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.61 E-value=0.29 Score=49.61 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=31.3
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
.++|.|||+|.-|.+.|..|+..|++|+++|+++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 4689999999999999999999999999999874
No 492
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.57 E-value=0.72 Score=40.93 Aligned_cols=85 Identities=20% Similarity=0.202 Sum_probs=52.3
Q ss_pred hccceEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccccccccHHHHHHHHHHHHhCCcEEEeCCc
Q 045826 220 KKILHFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHILNMFDKRITASAEEKFKRDGIDLKTGSM 299 (584)
Q Consensus 220 ~~~~~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~ 299 (584)
-.+++++|||+|-+|-.++..|...+. .+|+++.|.. .+ .+.+.+.+....++++.-..
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~-------------~~i~i~nRt~-------~r-a~~l~~~~~~~~~~~~~~~~ 68 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGA-------------KEITIVNRTP-------ER-AEALAEEFGGVNIEAIPLED 68 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTS-------------SEEEEEESSH-------HH-HHHHHHHHTGCSEEEEEGGG
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCC-------------CEEEEEECCH-------HH-HHHHHHHcCccccceeeHHH
Confidence 356799999999999999999998752 4699998864 22 22333333333444433211
Q ss_pred eeEEcCCeEEEEeCCCCeEEEEecceEEEccCCCCCchHHHH
Q 045826 300 VVKLSDKEISTKDRATGQISSIPYGMVVWSTGIGTRPVIMDF 341 (584)
Q Consensus 300 V~~v~~~~v~~~~~~~G~~~~i~~D~vI~a~G~~~~p~~~~l 341 (584)
+ .+. .-++|.||.||+....+.....
T Consensus 69 ~---------------~~~-~~~~DivI~aT~~~~~~i~~~~ 94 (135)
T PF01488_consen 69 L---------------EEA-LQEADIVINATPSGMPIITEEM 94 (135)
T ss_dssp H---------------CHH-HHTESEEEE-SSTTSTSSTHHH
T ss_pred H---------------HHH-HhhCCeEEEecCCCCcccCHHH
Confidence 1 100 1358999999997555544333
No 493
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.54 E-value=0.26 Score=52.71 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=32.2
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
+++|.|||.|+.|+..|..|++.|++|+++|+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 57899999999999999999999999999998753
No 494
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.40 E-value=0.49 Score=47.17 Aligned_cols=102 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCeEEEECCcHHHHHHHHhcccCC-CeEEEEcCCCCCCCCCccccccccccCcccccHHHHHHHHHcCCcEEEEEEEEE
Q 045826 56 KKKKVVVLGTGWAGTTFLKILKSNS-FEVQVVSPRNYFAFTPLLPSVTNGTVEARSIVEPIRNIVRKKGMDIQFKEAECY 134 (584)
Q Consensus 56 ~~~~VVIVGgG~AGl~aA~~L~~~g-~~V~lid~~~~~~~~p~~~~~~~g~~~~~~i~~~~~~~~~~~g~~v~~~~~~v~ 134 (584)
...+|+|||.|-.|-.+|..|++.| -+++|||....-.............--...-..-+.+.+...+..+++..- -.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i-~~ 107 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV-DD 107 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE-ec
Q ss_pred EEecCCCEEEEeecCccCCCCCceEEEeCCEEEEccCC
Q 045826 135 KIDAEKKQIYCRTTEDRTCGGKEEFALDYDILVIAMGA 172 (584)
Q Consensus 135 ~id~~~~~v~~~~~~~~~~~~~~~~~i~yD~LVlAtGs 172 (584)
.+++++-.-.+ .-.||++|.|++.
T Consensus 108 ~i~~e~~~~ll--------------~~~~D~VIdaiD~ 131 (268)
T PRK15116 108 FITPDNVAEYM--------------SAGFSYVIDAIDS 131 (268)
T ss_pred ccChhhHHHHh--------------cCCCCEEEEcCCC
No 495
>PRK07588 hypothetical protein; Provisional
Probab=90.31 E-value=0.26 Score=52.21 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=30.1
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCccc
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHI 271 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~i 271 (584)
+|+|||||++|+-+|..|++.+ .+|+++++.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYG--------------HEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCC--------------CceEEEeCCCCc
Confidence 7999999999999999999754 789999988764
No 496
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=90.28 E-value=0.32 Score=52.50 Aligned_cols=37 Identities=41% Similarity=0.509 Sum_probs=31.3
Q ss_pred eEEEECCChhHHHHHHHHHHHHHHhHhhhCcCCCCCcEEEEecCCcccc
Q 045826 224 HFVVVGGGPTGVEFAAALHDFVIDDLSKLYPSLKEFTRITLLEAGDHIL 272 (584)
Q Consensus 224 ~vvVVGgG~~gvE~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~il 272 (584)
+|+|||||.+|+-+|..|++.+ .+.+|+|+|+.+++.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G------------~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKG------------PDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhC------------CCCCEEEEEcCCCCc
Confidence 7999999999999999999854 136899999887764
No 497
>PRK04148 hypothetical protein; Provisional
Probab=90.16 E-value=0.26 Score=43.52 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=30.0
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRNY 91 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~~ 91 (584)
.++|++||.| .|.+.|..|.+.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3689999999 888889999999999999997754
No 498
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=90.16 E-value=0.43 Score=44.11 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=30.6
Q ss_pred CCCeEEEECCcH-HHHHHHHhcccCCCeEEEEcCC
Q 045826 56 KKKKVVVLGTGW-AGTTFLKILKSNSFEVQVVSPR 89 (584)
Q Consensus 56 ~~~~VVIVGgG~-AGl~aA~~L~~~g~~V~lid~~ 89 (584)
..++|+|||+|- +|..+|..|.+.|.+|+++++.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 468999999996 7999999999999999999975
No 499
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.90 E-value=0.31 Score=49.16 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=31.4
Q ss_pred CCeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 57 KKKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 57 ~~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
.++|.|||+|.-|...|..|+..|++|+++|+++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 4689999999999999999999999999999875
No 500
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.88 E-value=0.3 Score=49.48 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=31.0
Q ss_pred CeEEEECCcHHHHHHHHhcccCCCeEEEEcCCC
Q 045826 58 KKVVVLGTGWAGTTFLKILKSNSFEVQVVSPRN 90 (584)
Q Consensus 58 ~~VVIVGgG~AGl~aA~~L~~~g~~V~lid~~~ 90 (584)
++|.|||+|.-|...|..|+..|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 579999999999999999999999999999875
Done!