BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045827
         (227 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 21/169 (12%)

Query: 50  INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
           ++LPPGF+F PTDEEL++ +L  KA+       +I E++    DPW L  +AL     WY
Sbjct: 18  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 77

Query: 110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
           FFS  + K        RV G+GYWK    ++ +I++ G+++G+KK  VF +G+AP G +T
Sbjct: 78  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQRVGIKKALVFYIGKAPKGTKT 136

Query: 162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSK 210
           NWIM EY L           +R G+  L       WVLCR+Y++  +++
Sbjct: 137 NWIMHEYRLIEPS-------RRNGSTKLDD-----WVLCRIYKKQSSAQ 173


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  117 bits (292), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 97/169 (57%), Gaps = 21/169 (12%)

Query: 50  INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
           ++LPPGF+F PTDEEL++ +L  KA+       +I E++    DPW L  +AL     WY
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74

Query: 110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
           FFS  + K        RV G+GYWK    ++ +I++ G+++G+KK  VF +G+AP G +T
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQRVGIKKALVFYIGKAPKGTKT 133

Query: 162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVYEEDGNSK 210
           NWIM EY L           +R G+  L       WVLCR+Y++  +++
Sbjct: 134 NWIMHEYRLIEPS-------RRNGSTKLDD-----WVLCRIYKKQSSAQ 170


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 88/162 (54%), Gaps = 16/162 (9%)

Query: 50  INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWY 109
           +NLPPGF+F PTD+ELV H+L  KA+       II E++    DPW L  RAL     WY
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72

Query: 110 FFSQIEDK--------RVTGNGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVET 161
           FF+  + K        R  GNGYWK    ++PV    G+ +G+KK  VF  G+AP GV+T
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVA-PRGRTLGIKKALVFYAGKAPRGVKT 131

Query: 162 NWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCRVY 203
           +WIM EY L   G +A  +          S     WVLCR+Y
Sbjct: 132 DWIMHEYRLADAGRAAAGA-------KKGSLRLDDWVLCRLY 166


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,442,415
Number of Sequences: 62578
Number of extensions: 316668
Number of successful extensions: 684
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 4
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)