Query 045827
Match_columns 227
No_of_seqs 147 out of 950
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:58:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 5.7E-52 1.9E-56 346.6 14.3 150 50-207 13-170 (174)
2 1ut7_A No apical meristem prot 100.0 3.1E-51 1.1E-55 341.5 14.2 147 50-209 15-169 (171)
3 1ldd_A APC2WHB, anaphase promo 26.7 29 0.001 24.2 1.8 26 52-78 36-62 (74)
4 4eqa_C PA1845 protein, putativ 24.7 23 0.00078 27.0 0.9 16 85-100 32-47 (153)
5 3vpj_E TSE1-specific immunity 20.2 31 0.001 27.1 0.9 14 199-212 140-153 (192)
6 3nr5_A MAF1, repressor of RNA 18.9 25 0.00085 28.3 0.1 14 83-96 118-131 (164)
7 4dox_A Coat protein; all helix 17.9 64 0.0022 27.2 2.4 26 50-75 153-178 (226)
8 3fkr_A L-2-keto-3-deoxyarabona 14.3 60 0.002 28.1 1.4 21 50-70 108-130 (309)
9 3dct_B Nuclear receptor coacti 14.1 73 0.0025 16.8 1.1 12 60-72 3-14 (21)
10 3cpr_A Dihydrodipicolinate syn 13.9 45 0.0015 28.8 0.5 20 50-70 116-135 (304)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=5.7e-52 Score=346.60 Aligned_cols=150 Identities=45% Similarity=0.885 Sum_probs=130.4
Q ss_pred CCCCCceeEcCCHHHHHHHHhhhhhhCCCCCCCceeeCCCCCCCCCCcccccccCCCeEEEEeecc--------CCcccc
Q 045827 50 INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIE--------DKRVTG 121 (227)
Q Consensus 50 ~~LPpGfRF~PTDeELI~~YL~~Ki~g~pl~~~~I~~~DVy~~~P~eLp~~~~~~~~~wyFFs~~~--------~~R~~~ 121 (227)
+.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+....++.+||||+++. .+|+++
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t~ 92 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAG 92 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEET
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeecC
Confidence 799999999999999999999999999999999999999999999999998877788999999985 478999
Q ss_pred CcEEeeccccceEECCCCeEEEEEEEEEeeecCCCCCCccCeEEEEEEeCCCCCCCcccccccCCcccccCCCCcEEEEE
Q 045827 122 NGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCR 201 (227)
Q Consensus 122 ~G~Wk~~g~~k~I~~~~g~~iG~Kk~l~Fy~~~~~~~~kT~WvM~EY~l~~~~~~~~~~~~~~~~~~l~~~~~~~~VLCk 201 (227)
+|+||++|++++|.. +|.+||+||+|+||.++++++.+|+|+||||+|....... +....+. ...++|||||
T Consensus 93 ~G~WkatG~dk~I~~-~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~--~~~~~~~-----~~~~~wVlCr 164 (174)
T 3ulx_A 93 NGYWKATGADKPVAP-RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAA--AGAKKGS-----LRLDDWVLCR 164 (174)
T ss_dssp TEEEEECSCCEEECC-SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC------------------CCSSEEEEE
T ss_pred CceEccCCCCcEEee-CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcc--cccccCC-----CCCCCEEEEE
Confidence 999999999999966 5899999999999999999999999999999999885431 0011111 3468999999
Q ss_pred EEEecC
Q 045827 202 VYEEDG 207 (227)
Q Consensus 202 Iy~k~~ 207 (227)
||+|++
T Consensus 165 vf~K~~ 170 (174)
T 3ulx_A 165 LYNKKN 170 (174)
T ss_dssp EEESCC
T ss_pred EEEcCC
Confidence 999986
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3.1e-51 Score=341.46 Aligned_cols=147 Identities=41% Similarity=0.861 Sum_probs=128.6
Q ss_pred CCCCCceeEcCCHHHHHHHHhhhhhhCCCCCCCceeeCCCCCCCCCCcccccccCCCeEEEEeecc--------CCcccc
Q 045827 50 INLPPGFKFLPTDEELVLHFLYPKASLLPCHPNIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIE--------DKRVTG 121 (227)
Q Consensus 50 ~~LPpGfRF~PTDeELI~~YL~~Ki~g~pl~~~~I~~~DVy~~~P~eLp~~~~~~~~~wyFFs~~~--------~~R~~~ 121 (227)
+.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+....++.+||||+++. .+|+++
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t~ 94 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAG 94 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEET
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccCC
Confidence 689999999999999999999999999999999999999999999999998877889999999985 578999
Q ss_pred CcEEeeccccceEECCCCeEEEEEEEEEeeecCCCCCCccCeEEEEEEeCCCCCCCcccccccCCcccccCCCCcEEEEE
Q 045827 122 NGYWKQLDFEEPVINSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHLCSCGASANKSYKRRGNRILVSEGCCKWVLCR 201 (227)
Q Consensus 122 ~G~Wk~~g~~k~I~~~~g~~iG~Kk~l~Fy~~~~~~~~kT~WvM~EY~l~~~~~~~~~~~~~~~~~~l~~~~~~~~VLCk 201 (227)
+|+||++|+++.|.. +|.+||+||+|+||.++++++.+|+|+||||+|....... +. ...++|||||
T Consensus 95 ~G~Wk~tG~~k~I~~-~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~-------~~-----~~~~~~VlCr 161 (171)
T 1ut7_A 95 SGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN-------GS-----TKLDDWVLCR 161 (171)
T ss_dssp TEEEEEEEEEEEEEE-TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------------CCEEEEE
T ss_pred CCEEeccCCCceEEe-cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcccc-------Cc-----ccCCCEEEEE
Confidence 999999999999976 5799999999999999999999999999999999875211 11 2458999999
Q ss_pred EEEecCCC
Q 045827 202 VYEEDGNS 209 (227)
Q Consensus 202 Iy~k~~~~ 209 (227)
||+|+...
T Consensus 162 v~~k~~~~ 169 (171)
T 1ut7_A 162 IYKKQSSA 169 (171)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998644
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=26.72 E-value=29 Score=24.25 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=21.6
Q ss_pred CCCceeEcC-CHHHHHHHHhhhhhhCCC
Q 045827 52 LPPGFKFLP-TDEELVLHFLYPKASLLP 78 (227)
Q Consensus 52 LPpGfRF~P-TDeELI~~YL~~Ki~g~p 78 (227)
.|.|+.|.. |++||-. ||..++...-
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~k 62 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGR 62 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTS
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCe
Confidence 477999998 9999987 7999998543
No 4
>4eqa_C PA1845 protein, putative uncharacterized protein; type VI secretion, T6S, antitoxin-toxin complex, unknown FUN; 1.60A {Pseudomonas aeruginosa} PDB: 4fgi_B
Probab=24.69 E-value=23 Score=26.96 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=9.6
Q ss_pred eeCCCCCCCCCCcccc
Q 045827 85 PELNPQLHDPWQLNGR 100 (227)
Q Consensus 85 ~~~DVy~~~P~eLp~~ 100 (227)
..-|....+|...|..
T Consensus 32 snedpnddnpdafpep 47 (153)
T 4eqa_C 32 SNEDPNDDNPDAFPEP 47 (153)
T ss_dssp ECCCTTCSSCSEECSC
T ss_pred ccCCCCCCCcccCCCC
Confidence 3446666677666653
No 5
>3vpj_E TSE1-specific immunity protein; hydrolase-hydrolase inhibitor complex; 2.50A {Pseudomonas aeruginosa}
Probab=20.20 E-value=31 Score=27.10 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=7.9
Q ss_pred EEEEEEecCCCCCC
Q 045827 199 LCRVYEEDGNSKGF 212 (227)
Q Consensus 199 LCkIy~k~~~~~~~ 212 (227)
-|||-.+..+|.++
T Consensus 140 tckvvhredisgqr 153 (192)
T 3vpj_E 140 TCKVVHREDISGQR 153 (192)
T ss_dssp TCCEEEEEECTTCE
T ss_pred eeEEEeeccccCce
Confidence 36666665555554
No 6
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=18.94 E-value=25 Score=28.34 Aligned_cols=14 Identities=14% Similarity=0.019 Sum_probs=11.0
Q ss_pred ceeeCCCCCCCCCC
Q 045827 83 IIPELNPQLHDPWQ 96 (227)
Q Consensus 83 ~I~~~DVy~~~P~e 96 (227)
-+.++|||.+.|..
T Consensus 118 ~l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 118 CLAECDIYSYNPDL 131 (164)
T ss_dssp CGGGCEEEEECCCG
T ss_pred CccCCeEEEEcCCC
Confidence 35678999999983
No 7
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=17.88 E-value=64 Score=27.25 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=18.6
Q ss_pred CCCCCceeEcCCHHHHHHHHhhhhhh
Q 045827 50 INLPPGFKFLPTDEELVLHFLYPKAS 75 (227)
Q Consensus 50 ~~LPpGfRF~PTDeELI~~YL~~Ki~ 75 (227)
++-+-|..+.||++|+|.|=..+++.
T Consensus 153 l~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 153 MQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp CCCTTCCSSCCCHHHHHHHHTC----
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 45566999999999999986666554
No 8
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=14.30 E-value=60 Score=28.08 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=15.8
Q ss_pred CCCCCcee--EcCCHHHHHHHHh
Q 045827 50 INLPPGFK--FLPTDEELVLHFL 70 (227)
Q Consensus 50 ~~LPpGfR--F~PTDeELI~~YL 70 (227)
+-+||-|- |.||+++|+.||-
T Consensus 108 lv~~Pyy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 108 MAMPPYHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp EECCSCBTTTBCCCHHHHHHHHH
T ss_pred EEcCCCCccCCCCCHHHHHHHHH
Confidence 46777442 8999999999763
No 9
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=14.10 E-value=73 Score=16.81 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=8.6
Q ss_pred CCHHHHHHHHhhh
Q 045827 60 PTDEELVLHFLYP 72 (227)
Q Consensus 60 PTDeELI~~YL~~ 72 (227)
+.|.+|+. ||.-
T Consensus 3 ~kdhqllr-ylld 14 (21)
T 3dct_B 3 SKDHQLLR-YLLD 14 (26)
T ss_pred hhHHHHHH-HHHc
Confidence 67899998 4543
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=13.93 E-value=45 Score=28.77 Aligned_cols=20 Identities=30% Similarity=0.570 Sum_probs=15.5
Q ss_pred CCCCCceeEcCCHHHHHHHHh
Q 045827 50 INLPPGFKFLPTDEELVLHFL 70 (227)
Q Consensus 50 ~~LPpGfRF~PTDeELI~~YL 70 (227)
+-+|| |.|.||+++|+.||-
T Consensus 116 lv~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 116 LVVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EEECC-CSSCCCHHHHHHHHH
T ss_pred EECCC-CCCCCCHHHHHHHHH
Confidence 45677 558899999999873
Done!