BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045829
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMM|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
At1g79260 With Bound Heme
Length = 166
Score = 237 bits (604), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 117/158 (74%), Positives = 135/158 (85%), Gaps = 2/158 (1%)
Query: 4 GGGVPVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKL 63
G PVHP +AP+SYLLGTWRGQG G YPTI +F YGEE+ F+HSG KPVIAYTQKTWKL
Sbjct: 11 GESPPVHPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSG-KPVIAYTQKTWKL 69
Query: 64 GSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVR 123
SG PMHAESGY+RP PDGSIEVVIAQSTGLVEVQKGTYN +E+ IKL+S+LVGNASKV+
Sbjct: 70 ESGAPMHAESGYFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVGNASKVK 129
Query: 124 EVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 161
E+SR FELV+G+L YVV+M+T L+PHLKA+L KL
Sbjct: 130 EISREFELVDGKLSYVVRMSTT-TNPLQPHLKAILDKL 166
>pdb|2A13|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
At1g79260
pdb|2Q4N|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
From Arabidopsis Thaliana At1g79260
Length = 166
Score = 231 bits (590), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 115/158 (72%), Positives = 133/158 (84%), Gaps = 2/158 (1%)
Query: 4 GGGVPVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKL 63
G PVHP +AP+SYLLGTWRGQG G YPTI +F YGEE+ F+HSG KPVIAYTQKTWKL
Sbjct: 11 GESPPVHPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSG-KPVIAYTQKTWKL 69
Query: 64 GSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVR 123
SG P HAESGY+RP PDGSIEVVIAQSTGLVEVQKGTYN +E+ IKL+S+LVGNASKV+
Sbjct: 70 ESGAPXHAESGYFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVGNASKVK 129
Query: 124 EVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 161
E+SR FELV+G+L YVV+ +T L+PHLKA+L KL
Sbjct: 130 EISREFELVDGKLSYVVRXSTT-TNPLQPHLKAILDKL 166
>pdb|2FR2|A Chain A, Crystal Structure Of Rv2717c From M. Tuberculosis
Length = 172
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 10/156 (6%)
Query: 11 PAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMH 70
PA+ +S LLG+W G+G+G YPTI F+Y EE+ F H G KP + YTQ+T + G+P+H
Sbjct: 7 PALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVG-KPFLTYTQQTRAVADGKPLH 65
Query: 71 AESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE--------LVGNASKV 122
+E+GY R G +E+V+A +G+ E++ GTY+ VI+L+ L A +V
Sbjct: 66 SETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEV 125
Query: 123 REVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVL 158
+ R + + EL Y +QM L+ HL AVL
Sbjct: 126 TALDRSYRIDGDELSYSLQMRAVG-QPLQDHLAAVL 160
>pdb|3IA8|A Chain A, The Structure Of The C-Terminal Heme Nitrobindin Domain Of
Thap Domain-Containing Protein 4 From Homo Sapiens
pdb|3IA8|B Chain B, The Structure Of The C-Terminal Heme Nitrobindin Domain Of
Thap Domain-Containing Protein 4 From Homo Sapiens
Length = 163
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
Query: 11 PAIAPISYLLGTWRGQ--GSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEP 68
P + P+S+ LGTW G+G YPT+ F Y EE++ +H G+P + ++ ++ + +P
Sbjct: 6 PVVEPLSWXLGTWLSDPPGAGTYPTLQPFQYLEEVHISHV-GQPXLNFSFNSFHPDTRKP 64
Query: 69 MHAESGYWRPNPD-GSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASK---VRE 124
H E G+ R PD + V AQ+TG+VEV++G N +E I S + +K V +
Sbjct: 65 XHRECGFIRLKPDTNKVAFVSAQNTGVVEVEEGEVNGQELCIASHSIARISFAKEPHVEQ 124
Query: 125 VSRVFEL-VNGELRYVVQMA 143
++R F L G+L V A
Sbjct: 125 ITRKFRLNSEGKLEQTVSXA 144
>pdb|2FWV|A Chain A, Crystal Structure Of Rv0813
Length = 226
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 20 LGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSG----EPMHAESGY 75
+G WRG+G G P + + +G+++ +H GG + + ++W+L + EP E+G+
Sbjct: 72 VGVWRGEGEGRGPDGD-YRFGQQIVVSHDGGD-YLNWESRSWRLTATGDYQEPGLREAGF 129
Query: 76 WR-------PNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVR--EVS 126
WR P+ +IE+++A S G VE+ G + + L + S V
Sbjct: 130 WRFVADPYDPSESQAIELLLAHSAGYVELFYGRPRTQSSWELVTDALARSRSGVLVGGAK 189
Query: 127 RVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 161
R++ +V G V+ + L PHL A L +
Sbjct: 190 RLYGIVEGGDLAYVEERVDADGGLVPHLSARLSRF 224
>pdb|1O1U|A Chain A, Human Ileal Lipid-Binding Protein (Ilbp) In Free Form
pdb|1O1V|A Chain A, Human Ileal Lipid-Binding Protein (Ilbp) In Complex With
Cholyltaurine
Length = 127
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 22 TWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQ 58
TW SGG+ N F G+E N GGK A Q
Sbjct: 48 TWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQ 84
>pdb|1EIO|A Chain A, Ileal Lipid Binding Protein In Complex With Glycocholate
Length = 127
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 22 TWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQ 58
TW Q GG+ N F G+E + GGK A Q
Sbjct: 48 TWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQ 84
>pdb|1EAL|A Chain A, Nmr Study Of Ileal Lipid Binding Protein
Length = 127
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 22 TWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQ 58
TW Q GG+ N F G+E + GGK A Q
Sbjct: 48 TWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQ 84
>pdb|2CX7|A Chain A, Crystal Structure Of Sterol Carrier Protein 2
pdb|2CX7|B Chain B, Crystal Structure Of Sterol Carrier Protein 2
Length = 130
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 69 MHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKV 122
+ A+ W+ +G +E + A GL+E++KGT A + ELV A +V
Sbjct: 76 IEADLATWQEVLEGRLEPLSALXRGLLELKKGTIAALAPYAQAAQELVKVAREV 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,295,013
Number of Sequences: 62578
Number of extensions: 234550
Number of successful extensions: 346
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 12
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)