Query 045829
Match_columns 161
No_of_seqs 101 out of 281
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07828 nitrobindin nitrobindi 100.0 2.8E-53 6.1E-58 326.7 20.5 144 13-160 1-148 (148)
2 PF08768 DUF1794: Domain of un 100.0 3E-53 6.5E-58 328.2 19.1 147 11-161 1-154 (154)
3 KOG3371 Uncharacterized conser 100.0 2.2E-35 4.7E-40 241.7 16.6 154 4-161 70-242 (243)
4 COG5514 Uncharacterized conser 99.6 3.8E-14 8.2E-19 110.9 11.5 151 10-161 23-202 (203)
5 PF07617 DUF1579: Protein of u 97.7 0.01 2.3E-07 46.3 16.9 143 15-161 10-158 (159)
6 PF14231 GXWXG: GXWXG protein 38.4 11 0.00023 24.9 0.0 15 15-29 11-25 (60)
7 PF12204 DUF3598: Domain of un 36.1 90 0.0019 25.9 5.2 20 15-34 147-166 (252)
8 KOG0228 Beta-fructofuranosidas 35.9 76 0.0017 29.6 5.1 22 7-28 102-125 (571)
9 PF08300 HCV_NS5a_1a: Hepatiti 29.6 27 0.00058 23.2 0.9 12 19-30 10-21 (62)
10 PF14801 GCD14_N: tRNA methylt 26.9 76 0.0016 20.6 2.6 38 35-78 4-41 (54)
No 1
>cd07828 nitrobindin nitrobindin heme-binding domain. Nitrobindin is a heme-containing lipocalin that may reversibly bind nitric oxide. This heme-binding domain forms a beta barrel structure, and in a small family of proteins from tetrapods, it is found C-terminal to a THAP zinc finger domain (a sequence-specific DNA binding domain). Members of this group are putatively related to fatty acid-binding proteins (FABPs).
Probab=100.00 E-value=2.8e-53 Score=326.72 Aligned_cols=144 Identities=44% Similarity=0.942 Sum_probs=138.0
Q ss_pred cccccceeeEEEeeeeecCCCCCcccceEEEEEEecCCcCceEEEEEEEECCCCCCceeeeeEEEeCCCC-CEEEEEEeC
Q 045829 13 IAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDG-SIEVVIAQS 91 (161)
Q Consensus 13 l~PLawLlG~W~G~G~~~yP~~~~~~y~Eei~fs~~~G~p~L~y~s~~w~~~~g~p~h~EtGfwr~~p~~-~ve~~la~p 91 (161)
|.||+||||+|+|.|++.||++++|+|+|+|+|+| +|+|+|+|+|++|++++++|+|+|+||||++|++ +|++++|||
T Consensus 1 l~PLa~LvG~W~G~G~~~~P~~~~~~y~E~i~f~~-~g~p~L~Y~s~~w~~~~~~p~h~E~Gfwr~~~~~~~V~~~la~p 79 (148)
T cd07828 1 LGPLAWLLGTWEGKGVGGYPTIEEFTYGEEITFSH-DGQPFLNYTSRTWRLDDGRPLHRETGFWRIDPDTGEVELLLAHP 79 (148)
T ss_pred CcCcceEeEEEEeeeeccCCCCCceEeEEEEEEEc-CCCCeEEEEEEEEeCCCCCcceEeeEEEEEcCCCCEEEEEEEEC
Confidence 68999999999999999999999999999999999 5999999999999999999999999999999887 999999999
Q ss_pred CceEEEEeEEecCCCCeEEEEeeeeec---cccccceeEEEEEECCeEEEEEEeeecCCCCcccceeeeEEe
Q 045829 92 TGLVEVQKGTYNAEEKVIKLQSELVGN---ASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 160 (161)
Q Consensus 92 ~G~~ei~~G~~~~~~~~i~l~t~~i~~---a~~v~~~~R~f~l~~~~L~~~~~ma~~~~~~l~~hlsa~l~r 160 (161)
+|+|||++|+++ +++|+|+++.|++ ++++++++|+|+|++|+|+|+++|++. ++||++|+||+|+|
T Consensus 80 ~G~~ei~~G~~~--~~~~~l~~~~i~rt~~a~~~~~~~R~~~l~~~~L~~~~~~~~~-~~~l~~h~s~~L~r 148 (148)
T cd07828 80 TGVVEIEEGEVR--GTQLELTTDAVARTSFAPEVTAAKRLYGLVDGTLSYTVDMATV-GQPLTHHLSARLKR 148 (148)
T ss_pred CceEEEEEeEEc--CCEEEEEEccEEEcCCcccccceEEEEEEeCCeEEEEEEeeeC-CCCCceeEeeEEeC
Confidence 999999999997 5799999999987 446999999999999999999999999 89999999999998
No 2
>PF08768 DUF1794: Domain of unknown function (DUF1794); InterPro: IPR014878 This protein forms a beta barrel structure. It is sometimes found on proteins containing a THAP (IPR006612 from INTERPRO) domain. ; PDB: 2FR2_A 2A13_A 2Q4N_A 3EMM_A 3IA8_B 2FWV_A.
Probab=100.00 E-value=3e-53 Score=328.17 Aligned_cols=147 Identities=40% Similarity=0.876 Sum_probs=137.2
Q ss_pred CccccccceeeEEEeeeeecCCCCCcccceEEEEEEecCCcCceEEEEEEEECCCCC--CceeeeeEEEeCCCCC-EEEE
Q 045829 11 PAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGE--PMHAESGYWRPNPDGS-IEVV 87 (161)
Q Consensus 11 p~l~PLawLlG~W~G~G~~~yP~~~~~~y~Eei~fs~~~G~p~L~y~s~~w~~~~g~--p~h~EtGfwr~~p~~~-ve~~ 87 (161)
|+|.||+||||+|+|+|++.||++++|+|+|+|+|+| +|+|+|+|++++|.+++|+ |+|+|+||||++|+++ |+++
T Consensus 1 p~L~PLa~LlG~W~G~G~~~~P~~~~~~y~e~i~f~~-~g~p~L~y~~~~~~~~~g~~~p~h~E~Gf~~~~~~~~~v~~~ 79 (154)
T PF08768_consen 1 PELGPLAWLLGTWEGEGVGVYPTIEDFPYGEEITFSH-DGQPFLNYTSRTWNVDDGSVRPFHDETGFWRVDPATNEVELS 79 (154)
T ss_dssp GGGGGGGGG-EEEEEEEEEEETTEEEEEEEEEEEEEE-SSSSEEEEEEEEEETTTS-EEEEEEEEEEEEESTTSEEEEEE
T ss_pred CCCcccccEeEEEEEeeEccCCCCCCcCcEEEEEEEE-CCcCeEEEEEEEEECCCCCCCccccceeEEEEeCCCCEEEEE
Confidence 7899999999999999999999999999999999999 5999999999999999888 9999999999999986 9999
Q ss_pred EEeCCceEEEEeEEecCCCCeEEEEeeeeecc---ccccceeEEEEEEC-CeEEEEEEeeecCCCCcccceeeeEEeC
Q 045829 88 IAQSTGLVEVQKGTYNAEEKVIKLQSELVGNA---SKVREVSRVFELVN-GELRYVVQMATNHLTSLRPHLKAVLRKL 161 (161)
Q Consensus 88 la~p~G~~ei~~G~~~~~~~~i~l~t~~i~~a---~~v~~~~R~f~l~~-~~L~~~~~ma~~~~~~l~~hlsa~l~rv 161 (161)
+++|+|+++||+|+++ +++|+|++++|+++ ++|++++|+|+|++ |+|+|+++|++. ++||++|+||+|+||
T Consensus 80 ~~~p~G~~~l~~G~~~--~~~i~l~t~~i~r~~~~k~v~~~~R~~~l~~~~~L~~~~~~~~~-~~~l~~h~sa~L~Rv 154 (154)
T PF08768_consen 80 LAHPRGVTELEEGTVD--GPRIELETDAIARSPFAKEVTAFKRMFGLVDDGTLMYTQDMATI-GGPLQHHLSARLKRV 154 (154)
T ss_dssp EEETTTEEEEEEEEEE--TTEEEEEEEEEEE-TTS-SEEEEEEEEEEETTSEEEEEEEEEET-TSEEEEEEEEEEEEE
T ss_pred EEeCCceEEEEEEEcC--CCEEEEEECcEEecccccccccEEEEEEEecCCeEEEEEEhhhc-CCCCcceEEEEEEeC
Confidence 9999999999999976 78999999999974 58999999999995 599999999998 889999999999996
No 3
>KOG3371 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.2e-35 Score=241.66 Aligned_cols=154 Identities=34% Similarity=0.712 Sum_probs=142.3
Q ss_pred CCCCCCCCccccccceeeEEEee--eeecCCCCCcccceEEEEEEecCC-----cCceEEEEEEEECCCCCCceeeeeEE
Q 045829 4 GGGVPVHPAIAPISYLLGTWRGQ--GSGGYPTINAFDYGEELNFTHSGG-----KPVIAYTQKTWKLGSGEPMHAESGYW 76 (161)
Q Consensus 4 ~~~~~L~p~l~PLawLlG~W~G~--G~~~yP~~~~~~y~Eei~fs~~~G-----~p~L~y~s~~w~~~~g~p~h~EtGfw 76 (161)
.....|+|.|.|++||||+|+++ |++.||++.+|.|+|||++++. | .|+|||++++|+++|.+++|+|+||+
T Consensus 70 ~~~~~L~P~l~p~~~~vG~W~S~~~g~~~fPt~~~f~y~Eei~i~~~-~~~~~~~p~LNyTa~aws~~~~~~~H~e~Gfi 148 (243)
T KOG3371|consen 70 QDDLPLNPILKPIAWLVGRWRSEFSGKGRFPTDPSFTYGEEIIISIP-GNPSFHVPFLNYTATAWSLDDKDPMHVENGFI 148 (243)
T ss_pred ccccccCcccchhhhhhceeeeecCCceecCCCCCCccceeEEEecC-CccccCCcceEEeeeeeccCCCcccceecceE
Confidence 45678999999999999999999 9999999999999999999995 6 99999999999999999999999999
Q ss_pred EeCCC---CCEEEEEEeCCceEEEEeEEecCCCCeEEEEeeeeec-----cccccceeEEEEEE-CCeEEEEEEeee---
Q 045829 77 RPNPD---GSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGN-----ASKVREVSRVFELV-NGELRYVVQMAT--- 144 (161)
Q Consensus 77 r~~p~---~~ve~~la~p~G~~ei~~G~~~~~~~~i~l~t~~i~~-----a~~v~~~~R~f~l~-~~~L~~~~~ma~--- 144 (161)
+++|+ +.|+++.++|+|+++|++|++. ++++.|....+.+ .+.+...+|.|.|. ++.|++++.|.+
T Consensus 149 t~~p~~~t~~val~t~~N~Gl~~iEeGtv~--~~~l~l~lk~~~riSf~~~~~v~~~~r~~~l~~~n~Le~~v~m~t~~~ 226 (243)
T KOG3371|consen 149 TLKPDKMTRSVALTTVMNTGLVEIEEGTVN--GNQLRLKLKYIGRISFSRDKAVHNIRREFTLGDENKLEMQVHMLTIRG 226 (243)
T ss_pred EEccCCCCceEEEEeeccCceEEEEeeccc--CcEEEEEEeecceeeeccccccccceeEEEEecCCceeeeeeeeeccc
Confidence 99999 7999999999999999999998 4588888876653 56899999999998 689999999999
Q ss_pred cCCCCcccceeeeEEeC
Q 045829 145 NHLTSLRPHLKAVLRKL 161 (161)
Q Consensus 145 ~~~~~l~~hlsa~l~rv 161 (161)
. ++.+++|..+.|+|+
T Consensus 227 ~-T~~~~eh~~v~y~k~ 242 (243)
T KOG3371|consen 227 T-THKFTEHYKVIYKKV 242 (243)
T ss_pred c-cccceeeeeeeeeec
Confidence 6 889999999999996
No 4
>COG5514 Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=3.8e-14 Score=110.87 Aligned_cols=151 Identities=21% Similarity=0.322 Sum_probs=111.0
Q ss_pred CCccccccceeeEEEee-eeecCCCC----------CcccceEEEEEEec----CCcC----ceEEEEEEEECCCCCCce
Q 045829 10 HPAIAPISYLLGTWRGQ-GSGGYPTI----------NAFDYGEELNFTHS----GGKP----VIAYTQKTWKLGSGEPMH 70 (161)
Q Consensus 10 ~p~l~PLawLlG~W~G~-G~~~yP~~----------~~~~y~Eei~fs~~----~G~p----~L~y~s~~w~~~~g~p~h 70 (161)
.-++.||+-|+|+|+++ |.+-.|.. ..-+|.|.|+|+.. ++-| .|+|++.+.+..|...+|
T Consensus 23 st~inPLakL~GvW~~dkGvDVaP~~e~s~v~~G~~a~~py~E~i~~~~~~~aTNas~Q~Lv~~~Yh~~vfr~~dn~~fH 102 (203)
T COG5514 23 STNINPLAKLAGVWQSDKGVDVAPKEEGSNVGNGGPARRPYRERIRMDAIDPATNASPQLLVGLRYHSHVFRPGDNITFH 102 (203)
T ss_pred ccccchhHHhhceeecccccccCcccccCCCCCCCccccceeEEEEeccCCcccCCCcceeEEEeeeeeccccccCceee
Confidence 34588999999999998 88777632 34679999999985 3433 389999999999999999
Q ss_pred eeeeEEEeCCCC-CEEEEEEeCCceEEEEeEEecCCCCeEEEEee-eeeccc------cccceeEEEEEE-CCeEEEEEE
Q 045829 71 AESGYWRPNPDG-SIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE-LVGNAS------KVREVSRVFELV-NGELRYVVQ 141 (161)
Q Consensus 71 ~EtGfwr~~p~~-~ve~~la~p~G~~ei~~G~~~~~~~~i~l~t~-~i~~a~------~v~~~~R~f~l~-~~~L~~~~~ 141 (161)
...|||-|++.. -|.=++..|+|+|.+.+|....+ +...-.+. .|+..+ +.+...--.-|. ||.|.|.+.
T Consensus 103 DQvGywiwdkknn~i~~sfcIPRgvc~~AeG~a~~t-~~~~t~t~G~iae~sfm~kn~kT~~fs~di~ln~DgslsY~q~ 181 (203)
T COG5514 103 DQVGYWIWDKKNNLIMQSFCIPRGVCLLAEGWANDT-KFSVTATRGDIAETSFMDKNFKTTSFSCDIALNDDGSLSYLQQ 181 (203)
T ss_pred ccceEEEEecCCCeEEEeeeccceEEEEeecccCCc-eeeeecccCCchhhhHHHhcCCcceEEEEEEecCCCcEEEEEE
Confidence 999999998754 67888999999999999998632 22222222 355433 333333334445 668999884
Q ss_pred eeec-CCCCcccceeeeEEeC
Q 045829 142 MATN-HLTSLRPHLKAVLRKL 161 (161)
Q Consensus 142 ma~~-~~~~l~~hlsa~l~rv 161 (161)
..-. .|+++.|-.+..|.||
T Consensus 182 TsL~iyGq~F~HvD~sTL~kv 202 (203)
T COG5514 182 TSLMIYGQAFNHVDASTLTKV 202 (203)
T ss_pred EEEEEeccccceechhheEec
Confidence 3322 3788888888888876
No 5
>PF07617 DUF1579: Protein of unknown function (DUF1579); InterPro: IPR011473 This is a family of paralogous hypothetical proteins identified in Rhodopirellula baltica that also has members in Gloeobacter violaceus, Rhizobium meliloti and Agrobacterium tumefaciens, amongst others.
Probab=97.66 E-value=0.01 Score=46.33 Aligned_cols=143 Identities=18% Similarity=0.221 Sum_probs=92.7
Q ss_pred cccceeeEEEeeeeecC-CCCCcccceEEEEEEecCCcCceEEEEEEEECCCCCCceeeeeEEEeCCCC-CEEEEEEeCC
Q 045829 15 PISYLLGTWRGQGSGGY-PTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDG-SIEVVIAQST 92 (161)
Q Consensus 15 PLawLlG~W~G~G~~~y-P~~~~~~y~Eei~fs~~~G~p~L~y~s~~w~~~~g~p~h~EtGfwr~~p~~-~ve~~la~p~ 92 (161)
=|+.|+|.|++++...+ |+..+....=+.++... |.-+|--+.+--.. +|.|++. .+.+=.+|.. +..-.-+.+-
T Consensus 10 ~L~~lvG~W~~~~~~~~~P~~~~~~~~~~~~~r~L-gG~~l~~e~~g~~~-~g~~~~~-~~~lGYD~~~~~yvgtWidSM 86 (159)
T PF07617_consen 10 WLARLVGEWTGEGECWMGPDQPPMKSTGTETVRML-GGRWLIQEYEGSMP-GGGPFEG-IGTLGYDPAKKKYVGTWIDSM 86 (159)
T ss_pred HHHhhcCceeEEEEEecCCCCCCcEEEEEEEEEEe-CCEEEEEEEEeecC-CCCceEE-EEEEEECCccCeEEEEEeccC
Confidence 36677999999998755 65544444333334433 55565555444333 4778753 3444457764 3444433333
Q ss_pred ce-EEEEeEEecCCCCeEEEEeeeee-c-cccccceeEEEEEE-CCeEEEEEEeeecCCCCcccceeeeEEeC
Q 045829 93 GL-VEVQKGTYNAEEKVIKLQSELVG-N-ASKVREVSRVFELV-NGELRYVVQMATNHLTSLRPHLKAVLRKL 161 (161)
Q Consensus 93 G~-~ei~~G~~~~~~~~i~l~t~~i~-~-a~~v~~~~R~f~l~-~~~L~~~~~ma~~~~~~l~~hlsa~l~rv 161 (161)
|- ..+++|+++.+++.|+|.+.-.. . ..+....+=++.++ +|.+.....+... +.+=+.-+++.|+|.
T Consensus 87 ~t~~~~~~G~~d~~gk~ltl~~~gp~~~~~G~~~~~R~v~~~~ddd~~~~~~~~~~~-dG~w~~~me~~yrR~ 158 (159)
T PF07617_consen 87 GTGIWVYEGTLDDDGKTLTLNGEGPDPGGSGKMWGYRDVIEFVDDDHRTLTSYMKQP-DGEWKKFMEIVYRRK 158 (159)
T ss_pred CCceeeEccccCCCCCEEEEEEEecCCCCCCcccceEEEEEEeCCCeeEEEEEEeCC-CCceEEEEEEEEEEc
Confidence 32 66999999988888999776322 1 23345677788888 7788888888887 677788899999985
No 6
>PF14231 GXWXG: GXWXG protein
Probab=38.37 E-value=11 Score=24.91 Aligned_cols=15 Identities=33% Similarity=0.804 Sum_probs=11.6
Q ss_pred cccceeeEEEeeeee
Q 045829 15 PISYLLGTWRGQGSG 29 (161)
Q Consensus 15 PLawLlG~W~G~G~~ 29 (161)
+...|+|+|+|.+..
T Consensus 11 ~~~~m~G~W~G~~f~ 25 (60)
T PF14231_consen 11 DPEFMLGRWRGGEFD 25 (60)
T ss_pred CHHHheEecccCccC
Confidence 457899999997543
No 7
>PF12204 DUF3598: Domain of unknown function (DUF3598); InterPro: IPR022017 Proteins containing this domain are found in bacteria and eukaryotes and contain a barrel structure similar to that seen in the lipocalin superfamily. ; PDB: 2O62_B.
Probab=36.09 E-value=90 Score=25.88 Aligned_cols=20 Identities=35% Similarity=0.727 Sum_probs=14.2
Q ss_pred cccceeeEEEeeeeecCCCC
Q 045829 15 PISYLLGTWRGQGSGGYPTI 34 (161)
Q Consensus 15 PLawLlG~W~G~G~~~yP~~ 34 (161)
+..-|+|+|+|.-.-.+|+.
T Consensus 147 ~~~~llG~W~G~~~t~~~d~ 166 (252)
T PF12204_consen 147 TIEQLLGKWQGESVTITPDL 166 (252)
T ss_dssp -HHHC-EEEEEEEEEEETT-
T ss_pred ChhhcCcceEEEEEEecCCC
Confidence 45568999999988888776
No 8
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=35.90 E-value=76 Score=29.61 Aligned_cols=22 Identities=36% Similarity=0.718 Sum_probs=17.8
Q ss_pred CCCCCcccccc--ceeeEEEeeee
Q 045829 7 VPVHPAIAPIS--YLLGTWRGQGS 28 (161)
Q Consensus 7 ~~L~p~l~PLa--wLlG~W~G~G~ 28 (161)
..|||++.|=. =+-|.|.|.-.
T Consensus 102 ~~lp~Ai~Ps~~~ding~wSGSat 125 (571)
T KOG0228|consen 102 EALPPAIAPSEWFDINGCWSGSAT 125 (571)
T ss_pred cccCcccCCCCccccCccccceEE
Confidence 36899999999 56799999743
No 9
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=29.64 E-value=27 Score=23.25 Aligned_cols=12 Identities=42% Similarity=0.877 Sum_probs=7.8
Q ss_pred eeeEEEeeeeec
Q 045829 19 LLGTWRGQGSGG 30 (161)
Q Consensus 19 LlG~W~G~G~~~ 30 (161)
.-|.|+|+|...
T Consensus 10 y~G~W~GdG~~~ 21 (62)
T PF08300_consen 10 YKGVWRGDGVMH 21 (62)
T ss_dssp B-SEEES-EEEE
T ss_pred CCcEEcCCCEEE
Confidence 458999999863
No 10
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=26.87 E-value=76 Score=20.56 Aligned_cols=38 Identities=26% Similarity=0.485 Sum_probs=22.8
Q ss_pred CcccceEEEEEEecCCcCceEEEEEEEECCCCCCceeeeeEEEe
Q 045829 35 NAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRP 78 (161)
Q Consensus 35 ~~~~y~Eei~fs~~~G~p~L~y~s~~w~~~~g~p~h~EtGfwr~ 78 (161)
.+|.++|.|-++..-|+- .+-.+..|.-+|..-|+++=
T Consensus 4 Gpf~~GdrVQlTD~Kgr~------~Ti~L~~G~~fhThrG~i~H 41 (54)
T PF14801_consen 4 GPFRAGDRVQLTDPKGRK------HTITLEPGGEFHTHRGAIRH 41 (54)
T ss_dssp -S--TT-EEEEEETT--E------EEEE--TT-EEEETTEEEEH
T ss_pred CCCCCCCEEEEccCCCCe------eeEEECCCCeEEcCccccch
Confidence 368999999999754542 24557789999999999875
Done!