Query 045829
Match_columns 161
No_of_seqs 101 out of 281
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:00:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fr2_A Hypothetical protein RV 100.0 1.5E-58 5E-63 362.9 20.6 155 5-161 1-163 (172)
2 3ia8_A THAP domain-containing 100.0 2.6E-58 8.9E-63 358.7 18.8 152 6-161 1-161 (163)
3 2a13_A AT1G79260; structural g 100.0 1.6E-57 5.3E-62 355.3 21.0 155 5-161 12-166 (166)
4 2fwv_A RV0813C, hypothetical p 100.0 2.6E-54 9E-59 350.9 19.4 154 4-161 56-224 (226)
5 2o62_A Hypothetical protein; s 56.1 78 0.0027 25.5 10.1 25 10-35 135-159 (270)
6 3na2_A Uncharacterized protein 21.5 53 0.0018 24.0 2.3 26 83-112 43-68 (172)
7 3ol0_A De novo designed monome 11.2 1.4E+02 0.0047 17.9 1.9 11 75-85 18-28 (48)
8 3fqm_A NS5A, non-structural pr 9.9 86 0.0029 23.8 0.8 14 17-30 11-24 (177)
9 2rsg_A Collagen type IV alpha- 9.2 2.3E+02 0.008 17.5 2.7 15 126-140 19-33 (94)
10 3rcp_A Pleckstrin homology dom 7.5 3.4E+02 0.011 16.9 3.0 17 126-142 17-33 (103)
No 1
>2fr2_A Hypothetical protein RV2717C; beta barrel, fatty acid binding, structural genomics, PSI, P structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: b.60.1.8
Probab=100.00 E-value=1.5e-58 Score=362.85 Aligned_cols=155 Identities=38% Similarity=0.706 Sum_probs=145.1
Q ss_pred CCCCCCCccccccceeeEEEeeeeecCCCCCcccceEEEEEEecCCcCceEEEEEEEECCCCCCceeeeeEEEeCCCCCE
Q 045829 5 GGVPVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSI 84 (161)
Q Consensus 5 ~~~~L~p~l~PLawLlG~W~G~G~~~yP~~~~~~y~Eei~fs~~~G~p~L~y~s~~w~~~~g~p~h~EtGfwr~~p~~~v 84 (161)
++++|||+|.||+||+|+|+|+|++.||++++|+|+|+|+|+| +|+|||+|+|++|++++++|+|+|+||||++|+++|
T Consensus 1 ~~~~l~p~L~PLa~LlG~W~G~G~~~~Pt~~~~~y~Eei~fs~-~G~p~L~Y~s~~w~~~~~~p~h~E~Gfwr~~~~g~v 79 (172)
T 2fr2_A 1 MTRDLAPALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAH-VGKPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCV 79 (172)
T ss_dssp ---CCCGGGGGGGGGCEEEEEEEEECCTTSCCEEEEEEEEEEE-CSSSEEEEEEEEEETTTCCEEEEEEEEEEESSTTEE
T ss_pred CCCCcCcchhccceeeEEEEeeeEEeCCCCCceeeEEEEEEEE-CCCCeEEEEEEEEECCCCCcceEeeEEEEECCCCcE
Confidence 4789999999999999999999999999999999999999999 599999999999999999999999999999999999
Q ss_pred EEEEEeCCceEEEEeEEe--cCCCCeEEEEee---eeec---cccccceeEEEEEECCeEEEEEEeeecCCCCcccceee
Q 045829 85 EVVIAQSTGLVEVQKGTY--NAEEKVIKLQSE---LVGN---ASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKA 156 (161)
Q Consensus 85 e~~la~p~G~~ei~~G~~--~~~~~~i~l~t~---~i~~---a~~v~~~~R~f~l~~~~L~~~~~ma~~~~~~l~~hlsa 156 (161)
|++++||+|++|||+|++ .+++.+|+|+++ +|++ +++|++++|+|+|++|+|+|+++||+. ++|||+||||
T Consensus 80 e~~la~p~G~~ei~~G~~~~~~~~~~~~l~t~~~~~i~rs~~a~~v~~~~R~f~l~~~~L~y~~~ma~~-~~~l~~hlsa 158 (172)
T 2fr2_A 80 ELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAV-GQPLQDHLAA 158 (172)
T ss_dssp EEEEEETTTEEEEEEEEEEEETTEEEEEEETTTTCEEEECTTSCCEEEEEEEEEEETTEEEEEEEEEET-TEEEEEEEEE
T ss_pred EEEEEeCCceEEEEEEEeecCCCccEEEEEecccccEEecCCcccccceEEEEEEeCCEEEEEEEeecC-CCCCccceEE
Confidence 999999999999999988 444569999999 9987 456999999999999999999999999 9999999999
Q ss_pred eEEeC
Q 045829 157 VLRKL 161 (161)
Q Consensus 157 ~l~rv 161 (161)
+|+|+
T Consensus 159 ~l~r~ 163 (172)
T 2fr2_A 159 VLHRQ 163 (172)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99996
No 2
>3ia8_A THAP domain-containing protein 4; beta barrel,structural genomics, protein structure initiativ center for eukaryotic structural genomics, CESG; HET: HEM; 1.79A {Homo sapiens} SCOP: b.60.1.0
Probab=100.00 E-value=2.6e-58 Score=358.73 Aligned_cols=152 Identities=34% Similarity=0.684 Sum_probs=144.7
Q ss_pred CCCCCCccccccceeeEEEe--eeeecCCCCCcccceEEEEEEecCCcCceEEEEEEEECCCCCCceeeeeEEEeCCCC-
Q 045829 6 GVPVHPAIAPISYLLGTWRG--QGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDG- 82 (161)
Q Consensus 6 ~~~L~p~l~PLawLlG~W~G--~G~~~yP~~~~~~y~Eei~fs~~~G~p~L~y~s~~w~~~~g~p~h~EtGfwr~~p~~- 82 (161)
+++|||+|.||+||||+|+| .|++.||++++|.|+|+|+|+| +|+|||||+|++|++|+++|+|+|+||||++|++
T Consensus 1 ~~~l~p~L~pLa~L~G~W~G~~~G~~~yP~~~~~~y~eei~f~~-~G~p~L~Y~s~~w~~d~~~p~h~E~Gfwr~~p~~~ 79 (163)
T 3ia8_A 1 PPKMNPVVEPLSWMLGTWLSDPPGAGTYPTLQPFQYLEEVHISH-VGQPMLNFSFNSFHPDTRKPMHRECGFIRLKPDTN 79 (163)
T ss_dssp CCCCCGGGGGGGGGCEEEEESSCEEEEETTEEEEEEEEEEEEEC-SSSSEEEEEEEEECTTTCCEEEEEEEEEEECTTSC
T ss_pred CCCCCcchhccceeeEEEeccCCccccCCCCCCceeEEEEEEEe-CCCCeEEEEEEEEECCCCCcceEEeEEEEEcCCCC
Confidence 57999999999999999999 5999999999999999999999 5999999999999999999999999999999985
Q ss_pred CEEEEEEeCCceEEEEeEEecCCCCeEEEEeeeeec---ccc--ccceeEEEEEE-CCeEEEEEEeeecCCCCcccceee
Q 045829 83 SIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGN---ASK--VREVSRVFELV-NGELRYVVQMATNHLTSLRPHLKA 156 (161)
Q Consensus 83 ~ve~~la~p~G~~ei~~G~~~~~~~~i~l~t~~i~~---a~~--v~~~~R~f~l~-~~~L~~~~~ma~~~~~~l~~hlsa 156 (161)
+|++++|||+|++|||+|+++ +++|+|+|++|+| ++. |++++|+|+|+ +|+|+|+++||+. ++|||+||||
T Consensus 80 ~ve~~la~p~G~~ei~~G~~~--~~~i~L~t~~v~rt~~a~~~~v~~~~R~~~l~~~g~L~~~~~ma~~-~~~l~~hlsa 156 (163)
T 3ia8_A 80 KVAFVSAQNTGVVEVEEGEVN--GQELCIASHSIARISFAKEPHVEQITRKFRLNSEGKLEQTVSMATT-TQPMTQHLHV 156 (163)
T ss_dssp EEEEEEEETTTEEEEEEEEEE--TTEEEEEEEEEEECTTCCSSCEEEEEEEEEECTTSCEEEEEEEEET-TEEEEEEEEE
T ss_pred eEEEEEEeCCCeEEEEEEEeC--CCEEEEEEccEEeccCCCCCceeeEEEEEEEcCCCcEEEEEEeecc-CCCCCcceeE
Confidence 899999999999999999997 6799999999987 454 99999999999 7899999999999 9999999999
Q ss_pred eEEeC
Q 045829 157 VLRKL 161 (161)
Q Consensus 157 ~l~rv 161 (161)
+|+||
T Consensus 157 ~l~r~ 161 (163)
T 3ia8_A 157 TYKKV 161 (163)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99997
No 3
>2a13_A AT1G79260; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; HET: MSE; 1.32A {Arabidopsis thaliana} SCOP: b.60.1.8 PDB: 2q4n_A 3emm_A*
Probab=100.00 E-value=1.6e-57 Score=355.27 Aligned_cols=155 Identities=74% Similarity=1.219 Sum_probs=147.0
Q ss_pred CCCCCCCccccccceeeEEEeeeeecCCCCCcccceEEEEEEecCCcCceEEEEEEEECCCCCCceeeeeEEEeCCCCCE
Q 045829 5 GGVPVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSI 84 (161)
Q Consensus 5 ~~~~L~p~l~PLawLlG~W~G~G~~~yP~~~~~~y~Eei~fs~~~G~p~L~y~s~~w~~~~g~p~h~EtGfwr~~p~~~v 84 (161)
.+++|||+|+||+||+|+|+|+|++.||++++|+|+|+|+|+| +|+|||+|+|++|++++++|+|+|+||||++|+++|
T Consensus 12 ~~~~l~~~L~PLa~L~G~W~G~G~~~~P~~~~~~y~Eei~fs~-~G~p~L~Y~~~~w~~~~~~p~h~E~Gywr~~p~~~v 90 (166)
T 2a13_A 12 ESPPVHPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSH-SGKPVIAYTQKTWKLESGAPMHAESGYFRPRPDGSI 90 (166)
T ss_dssp --CCCCTTTGGGGGGCEEEEEEEEEEETTEEEEEEEEEEEEEC-CSSSCEEEEEEEECTTTCCEEEEEEEEEEECTTSEE
T ss_pred CCCCCChhhhccceeeEEEEeeeEEeCCCCCceeeEEEEEEEe-CCCCeEEEEEEEEECCCCCcceEeeEEEEECCCCcE
Confidence 4679999999999999999999999999999999999999999 599999999999999999999999999999999999
Q ss_pred EEEEEeCCceEEEEeEEecCCCCeEEEEeeeeeccccccceeEEEEEECCeEEEEEEeeecCCCCcccceeeeEEeC
Q 045829 85 EVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 161 (161)
Q Consensus 85 e~~la~p~G~~ei~~G~~~~~~~~i~l~t~~i~~a~~v~~~~R~f~l~~~~L~~~~~ma~~~~~~l~~hlsa~l~rv 161 (161)
++++|||+|++|||+|+++++..+|+|++++|++++..+..+|+|+|++|+|+|+++|++. ++||++|+||+|+||
T Consensus 91 e~~la~p~G~~ei~~G~~~~~~~~~~l~t~~I~r~~~a~~~~R~y~l~~g~L~y~~~ma~~-~~~l~~h~sa~L~Rv 166 (166)
T 2a13_A 91 EVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVGNASKVKEISREFELVDGKLSYVVRMSTT-TNPLQPHLKAILDKL 166 (166)
T ss_dssp EEEEEETTSCEEEEEEEEETTTTEEEEEEEEEESCSSEEEEEEEEEEETTEEEEEEEEEES-SSCSEEEEEEEEEEC
T ss_pred EEEEEeCCceEEEEEEEecCCceEEEEEEccEEecCcchhcEEEEEEeCCEEEEEEEeecC-CCCCceeEEEEEEeC
Confidence 9999999999999999998665689999999999887777889999999999999999999 999999999999997
No 4
>2fwv_A RV0813C, hypothetical protein mtubf_01000852; structural genomics, conserved hypothetical; 1.70A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.6e-54 Score=350.91 Aligned_cols=154 Identities=28% Similarity=0.567 Sum_probs=143.0
Q ss_pred CCCCCCCCccccccceeeEEEeeeeecCCCCCcccceEEEEEEecCCcCceEEEEEEEECCCC----CCceeeeeEEEeC
Q 045829 4 GGGVPVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSG----EPMHAESGYWRPN 79 (161)
Q Consensus 4 ~~~~~L~p~l~PLawLlG~W~G~G~~~yP~~~~~~y~Eei~fs~~~G~p~L~y~s~~w~~~~g----~p~h~EtGfwr~~ 79 (161)
.++++|||+|.||+||||+|+|+|++.| ++++|+|+|||+|+| +|+|||+|+|++|+++++ +|+|+|+||||++
T Consensus 56 ~~~~dL~p~L~PLa~LlG~W~G~G~~~y-ti~~~~Y~EeI~Fsh-~G~P~L~Y~s~tw~~d~~g~~~~P~H~EtGywr~~ 133 (226)
T 2fwv_A 56 REGADLNNALLALLPLVGVWRGEGEGRG-PDGDYRFGQQIVVSH-DGGDYLNWESRSWRLTATGDYQEPGLREAGFWRFV 133 (226)
T ss_dssp TSSSCCCGGGGGGGGGCEEEEEEEEEEE-TTEEEEEEEEEEEEB-CSSSSEEEEEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred CCCCCCChhhhccceeeEEEEecccccc-ccCceeeEEEEEEEe-CCCCeEEEEEEEEEcCCCCCcCCcceeeeeEEEeC
Confidence 4788999999999999999999999999 999999999999999 599999999999999988 8999999999999
Q ss_pred CC-------CCEEEEEEeCCceEEEEeEEecCCCCeEEEEeeeeecc---ccccceeEEEEEEC-CeEEEEEEeeecCCC
Q 045829 80 PD-------GSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNA---SKVREVSRVFELVN-GELRYVVQMATNHLT 148 (161)
Q Consensus 80 p~-------~~ve~~la~p~G~~ei~~G~~~~~~~~i~l~t~~i~~a---~~v~~~~R~f~l~~-~~L~~~~~ma~~~~~ 148 (161)
|+ ++||++++||+|++|||+|++.+ .++|+|+++.|+|+ ++|++.+|+|+|++ |+|+|+++|++. ++
T Consensus 134 p~~~~~~~~g~Vel~la~p~Givei~~G~~~~-~~~i~L~t~~I~rt~~a~~v~~~~R~yglv~dg~L~y~~dma~~-g~ 211 (226)
T 2fwv_A 134 ADPYDPSESQAIELLLAHSAGYVELFYGRPRT-QSSWELVTDALARSRSGVLVGGAKRLYGIVEGGDLAYVEERVDA-DG 211 (226)
T ss_dssp C----------EEEEEEETTTEEEEEEEEEEE-TTEEEEEEEEEEECTTSCCCCCEEEEEEECTTSCEEEEEEEECT-TS
T ss_pred CCccCCCCCCeEEEEEEeCCceEEEEEEEcCC-CceEEEEEccEEecCccccccccEEEEEEcCCCcEEEEEEeecC-CC
Confidence 87 78999999999999999999974 26999999999874 56999999999995 899999999999 99
Q ss_pred CcccceeeeEEeC
Q 045829 149 SLRPHLKAVLRKL 161 (161)
Q Consensus 149 ~l~~hlsa~l~rv 161 (161)
||++||||+|+||
T Consensus 212 pl~~hlsa~L~Rv 224 (226)
T 2fwv_A 212 GLVPHLSARLSRF 224 (226)
T ss_dssp CEEEEEEEEEEEE
T ss_pred CcceeeEEEEEec
Confidence 9999999999996
No 5
>2o62_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.75A {Nostoc punctiforme} SCOP: b.60.1.9 b.60.1.9
Probab=56.09 E-value=78 Score=25.47 Aligned_cols=25 Identities=40% Similarity=0.777 Sum_probs=17.5
Q ss_pred CCccccccceeeEEEeeeeecCCCCC
Q 045829 10 HPAIAPISYLLGTWRGQGSGGYPTIN 35 (161)
Q Consensus 10 ~p~l~PLawLlG~W~G~G~~~yP~~~ 35 (161)
+|.|. +..|+|+|+|.-.-.+|+..
T Consensus 135 ~p~l~-~~~llG~W~G~~~t~~~d~~ 159 (270)
T 2o62_A 135 RPLLQ-INDLLGEWRGQAVTIYRDLR 159 (270)
T ss_dssp CCCCC-GGGTCEEEEEEEEEEETTCC
T ss_pred CCCCC-hHHhcCcceeEEEEecCCCC
Confidence 34444 34789999999777777654
No 6
>3na2_A Uncharacterized protein; beta-fold, metagenome, structural genomics, PSI-2, protein S initiative, midwest center for structural genomics; 2.29A {Leptospirillum rubarum}
Probab=21.46 E-value=53 Score=23.98 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=19.9
Q ss_pred CEEEEEEeCCceEEEEeEEecCCCCeEEEE
Q 045829 83 SIEVVIAQSTGLVEVQKGTYNAEEKVIKLQ 112 (161)
Q Consensus 83 ~ve~~la~p~G~~ei~~G~~~~~~~~i~l~ 112 (161)
---+++-.|.|++|+|.|+.+ ++++.
T Consensus 43 mclfsvrspg~vaelyggear----kv~i~ 68 (172)
T 3na2_A 43 MCLFSVRSPGGVAELYGGEAR----KVEIT 68 (172)
T ss_dssp CEEEEEEETTEEEEECCSCCS----EEEEE
T ss_pred ceEEEecCCCchhhhcCccee----EEEee
Confidence 456778899999999999753 45554
No 7
>3ol0_A De novo designed monomer trefoil-fold SUB-domain forms HOMO-trimer assembly; beta-trefoil, synthetic protein, function-COMP only; 1.48A {Synthetic construct}
Probab=11.18 E-value=1.4e+02 Score=17.87 Aligned_cols=11 Identities=55% Similarity=1.186 Sum_probs=8.4
Q ss_pred EEEeCCCCCEE
Q 045829 75 YWRPNPDGSIE 85 (161)
Q Consensus 75 fwr~~p~~~ve 85 (161)
|+++.||+.|.
T Consensus 18 ~LqI~PdG~V~ 28 (48)
T 3ol0_A 18 YLRINPDGTVD 28 (48)
T ss_dssp EEEECTTSBEE
T ss_pred EeEECCCCCCc
Confidence 67888888764
No 8
>3fqm_A NS5A, non-structural protein 5A; HCV, domain I, phosphoprotein, RNA-binding, metal BIND protein; 1.90A {Hepatitis c virus} PDB: 3fqq_A* 1zh1_A
Probab=9.87 E-value=86 Score=23.84 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=10.8
Q ss_pred cceeeEEEeeeeec
Q 045829 17 SYLLGTWRGQGSGG 30 (161)
Q Consensus 17 awLlG~W~G~G~~~ 30 (161)
.-.-|.|+|+|...
T Consensus 11 ~Gy~G~W~GdG~~~ 24 (177)
T 3fqm_A 11 RGYKGVWRGDGIMQ 24 (177)
T ss_dssp CCBCSEEESCEEEE
T ss_pred CCccceeccCceEE
Confidence 34569999999863
No 9
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=9.21 E-value=2.3e+02 Score=17.46 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=11.7
Q ss_pred eEEEEEECCeEEEEE
Q 045829 126 SRVFELVNGELRYVV 140 (161)
Q Consensus 126 ~R~f~l~~~~L~~~~ 140 (161)
+|-|-|.++.|.|.-
T Consensus 19 kR~FvL~~~~L~Yy~ 33 (94)
T 2rsg_A 19 DRWVVLKNNALSYYK 33 (94)
T ss_dssp EEEEEEETTEEEEES
T ss_pred EEEEEEECCEEEEEE
Confidence 477778899998864
No 10
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=7.51 E-value=3.4e+02 Score=16.89 Aligned_cols=17 Identities=41% Similarity=0.456 Sum_probs=12.9
Q ss_pred eEEEEEECCeEEEEEEe
Q 045829 126 SRVFELVNGELRYVVQM 142 (161)
Q Consensus 126 ~R~f~l~~~~L~~~~~m 142 (161)
+|.|-|.++.|.|.-+-
T Consensus 17 ~R~fvL~~~~L~Yy~~~ 33 (103)
T 3rcp_A 17 PRWFVLDNGILSYYDSQ 33 (103)
T ss_dssp EEEEEEETTEEEEESSC
T ss_pred ceEEEEECCEEEEEecC
Confidence 57788889999987643
Done!