BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045836
         (154 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PNO|A Chain A, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|2PNO|B Chain B, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|2PNO|C Chain C, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|2PNO|D Chain D, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|2PNO|E Chain E, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|2PNO|F Chain F, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|2PNO|G Chain G, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|2PNO|H Chain H, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|2PNO|I Chain I, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|2PNO|J Chain J, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|2PNO|K Chain K, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|2PNO|L Chain L, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|3PCV|A Chain A, Crystal Structure Analysis Of Human Leukotriene C4
           Synthase At 1.9 Angstrom Resolution
 pdb|3B29|A Chain A, Human Leukotriene C4 Synthase In Complex With
           Dodecyl-Beta-D- Selenomaltoside
          Length = 156

 Score = 35.8 bits (81), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 19  EYGYVALVLVFYCFLNFWMGFQVGAARKKYKVPYPTLYAVESENKEAKLFNCVQRGHQNS 78
           E   +A V +    L  +   QV +AR+ ++V  P L     E      F  V R   N 
Sbjct: 4   EVALLAAVTLLGVLLQAYFSLQVISARRAFRVS-PPLTTGPPE------FERVYRAQVNC 56

Query: 79  LELMPVFFMLMIVGGLK-HPCVCAVLGSLFTVTRFFYFKGYATGDPQKRLT 128
            E  P+F   + V G+  H    A+ G ++   R  YF+GYA    Q RL 
Sbjct: 57  SEYFPLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSA-QLRLA 106


>pdb|2UUH|A Chain A, Crystal Structure Of Human Leukotriene C4 Synthase In
           Complex With Substrate Glutathione
 pdb|2UUI|A Chain A, Crystal Structure Of Human Leukotriene C4 Synthase
 pdb|3HKK|A Chain A, Structure Of Human Leukotriene C4 Synthase In Complex With
           G Sulfonate
          Length = 156

 Score = 35.8 bits (81), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 19  EYGYVALVLVFYCFLNFWMGFQVGAARKKYKVPYPTLYAVESENKEAKLFNCVQRGHQNS 78
           E   +A V +    L  +   QV +AR+ ++V  P L     E      F  V R   N 
Sbjct: 10  EVALLAAVTLLGVLLQAYFSLQVISARRAFRVS-PPLTTGPPE------FERVYRAQVNC 62

Query: 79  LELMPVFFMLMIVGGLK-HPCVCAVLGSLFTVTRFFYFKGYATGDPQKRLT 128
            E  P+F   + V G+  H    A+ G ++   R  YF+GYA    Q RL 
Sbjct: 63  SEYFPLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSA-QLRLA 112


>pdb|3LEO|A Chain A, Structure Of Human Leukotriene C4 Synthase Mutant R31q In
           Complex With Glutathione
          Length = 155

 Score = 35.4 bits (80), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 19  EYGYVALVLVFYCFLNFWMGFQVGAARKKYKVPYPTLYAVESENKEAKLFNCVQRGHQNS 78
           E   +A V +    L  +   QV +AR+ ++V  P L     E      F  V R   N 
Sbjct: 9   EVALLAAVTLLGVLLQAYFSLQVISARQAFRVS-PPLTTGPPE------FERVYRAQVNC 61

Query: 79  LELMPVFFMLMIVGGLK-HPCVCAVLGSLFTVTRFFYFKGYATGDPQKRLT 128
            E  P+F   + V G+  H    A+ G ++   R  YF+GYA    Q RL 
Sbjct: 62  SEYFPLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSA-QLRLA 111


>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
           With Compound 16
          Length = 271

 Score = 31.2 bits (69), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 23/118 (19%)

Query: 35  FWMGFQVGAARKKYKVPYPTLYAVESENKEAKLFNCVQRGHQNSLELMPVFFMLMIVGGL 94
           FW+G +V     ++         +E+  +EAKLF                         L
Sbjct: 27  FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLF-----------------------AML 63

Query: 95  KHPCVCAVLGSLFTVTRFFYFKGYATGDPQKRLTIGKYGFLALLGLMVCTISFGINQL 152
           KHP + A+ G             +A G P  R+  GK     +L      I+ G+N L
Sbjct: 64  KHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYL 121


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.144    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,262,508
Number of Sequences: 62578
Number of extensions: 152199
Number of successful extensions: 255
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 5
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)