Query 045836
Match_columns 154
No_of_seqs 127 out of 865
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:58:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01124 MAPEG: MAPEG family; 99.9 1.1E-21 2.5E-26 142.1 12.5 122 25-146 3-129 (129)
2 COG3788 Uncharacterized relati 99.8 4.2E-18 9.1E-23 123.5 13.6 117 24-148 8-126 (131)
3 COG3686 Predicted membrane pro 99.7 4.9E-16 1.1E-20 112.6 11.3 103 42-145 20-124 (125)
4 COG5331 Uncharacterized protei 87.9 9.3 0.0002 28.4 10.7 49 72-120 56-106 (139)
5 PF15192 TMEM213: TMEM213 fami 49.2 38 0.00082 22.9 3.9 30 17-46 42-71 (82)
6 KOG3817 Uncharacterized conser 44.3 2.3E+02 0.0049 25.1 9.6 40 98-138 222-262 (452)
7 PF12273 RCR: Chitin synthesis 41.9 30 0.00065 25.1 2.9 17 33-49 14-30 (130)
8 PF07297 DPM2: Dolichol phosph 27.0 1.1E+02 0.0023 20.8 3.4 36 12-47 38-76 (78)
9 PF01102 Glycophorin_A: Glycop 24.9 1.2E+02 0.0027 22.2 3.7 19 31-49 78-96 (122)
10 PF01299 Lamp: Lysosome-associ 23.5 46 0.001 27.6 1.4 23 27-49 280-302 (306)
11 PF08009 CDP-OH_P_tran_2: CDP- 22.2 1.8E+02 0.0039 17.0 4.0 28 82-109 6-36 (39)
No 1
>PF01124 MAPEG: MAPEG family; InterPro: IPR001129 This entry represents a widespread superfamily known as MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism) []. Included are: 5-lipoxygenase activating protein (gene FLAP), which seems to be required for the activation of 5-lipoxygenase. Leukotriene C4 synthase (2.5.1.37 from EC), which catalyses the production of LTC4 from LTA4. Microsomal glutathione S-transferase II (2.5.1.18 from EC) (GST-II), which also produces LTC4 from LTA4. Prostaglandin E synthase, which catalyses the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.; PDB: 3DWW_A 2Q7R_D 2Q7M_B 2PNO_J 3B29_A 3HKK_A 2UUI_A 3PCV_A 2UUH_A 3LEO_A ....
Probab=99.88 E-value=1.1e-21 Score=142.05 Aligned_cols=122 Identities=31% Similarity=0.412 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc--ccchhhhHHHhHHHHhhhhhhhhHHHHHHHHHHHHhh--hHHHH
Q 045836 25 LVLVFYCFLNFWMGFQVGAARKKYKVPYPTLYAV--ESENKEAKLFNCVQRGHQNSLELMPVFFMLMIVGGLK--HPCVC 100 (154)
Q Consensus 25 l~~~l~~l~~~~~s~~V~~~R~k~~~~~p~~~~~--~~~~~~~~~~~ra~RAH~N~~E~~p~fl~~~ll~~l~--~p~~~ 100 (154)
+.+.+..+..++++..+++.|.+.+...|+.+.+ +.+++++++++|++|||+|++||+|+|+++++++.+. ++..+
T Consensus 3 ~~~~~l~~~~~~l~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ra~~N~~E~~~~f~~~~~~~~~~g~~~~~~ 82 (129)
T PF01124_consen 3 AWSALLVLLLFYLSYIVGAARFKAKVKGGEGDANPRDNPPTLPPWLERAQRAHQNFLENLPLFLVAVLLAILTGASPSLA 82 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHCCHHHTTTSSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-T-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCcccccccCcHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhCCcHHHH
Confidence 3455556677888899999999999988764432 2234567789999999999999999999999999998 56899
Q ss_pred HHHHHHHHHHHHHHhHhhccC-CCCCchhhhHHHHHHHHHHHHHHHH
Q 045836 101 AVLGSLFTVTRFFYFKGYATG-DPQKRLTIGKYGFLALLGLMVCTIS 146 (154)
Q Consensus 101 ~~~g~~~~~gRi~y~~gY~~g-~p~~R~~gg~~~~~~~l~l~~~~~~ 146 (154)
..++.+|+++|+.|..+|..+ .|..|+.++..+..+.+.+.+.++|
T Consensus 83 ~~l~~~~~~~R~~y~~~y~~~~~~~~R~~~~~~~~~~~~~l~~~~~~ 129 (129)
T PF01124_consen 83 ALLAWVFVVARVAYAVGYIAGNIPPLRSLGFLVGLLCLLALALAALY 129 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999987 6779999667888888888877664
No 2
>COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only]
Probab=99.79 E-value=4.2e-18 Score=123.51 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhHHHhHHHHhhhhhhhhHHHHHHHHHHHHhh--hHHHHH
Q 045836 24 ALVLVFYCFLNFWMGFQVGAARKKYKVPYPTLYAVESENKEAKLFNCVQRGHQNSLELMPVFFMLMIVGGLK--HPCVCA 101 (154)
Q Consensus 24 ~l~~~l~~l~~~~~s~~V~~~R~k~~~~~p~~~~~~~~~~~~~~~~ra~RAH~N~~E~~p~fl~~~ll~~l~--~p~~~~ 101 (154)
.+.+.+.++....+|+.|.+.|.|+++.|.| +. .++++|+.|||.|..|++|++++++++.++. .+++.+
T Consensus 8 tlyavl~~llll~LS~~vVrlR~k~rVa~gd----gg----~~eLqraira~gNatEYIPi~lill~~lemnga~tw~ih 79 (131)
T COG3788 8 ALYAVLNALLLLKLSFDVVRLRMKYRVAYGD----GG----FSELQRAIRAHGNATEYIPIGLILLLFLEMNGAETWMVH 79 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheecC----CC----hHHHHHHHHHcCChHHHhHHHHHHHHHHHHcCchhHHHH
Confidence 5678888888899999999999999998865 22 3469999999999999999999999999999 679999
Q ss_pred HHHHHHHHHHHHHhHhhccCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 045836 102 VLGSLFTVTRFFYFKGYATGDPQKRLTIGKYGFLALLGLMVCTISFG 148 (154)
Q Consensus 102 ~~g~~~~~gRi~y~~gY~~g~p~~R~~gg~~~~~~~l~l~~~~~~~~ 148 (154)
.+|.++++||++|.+|.......+|..|...+|.+.+.+.+..++..
T Consensus 80 ilG~il~~gRv~Ha~g~~~~~~~~R~~Gm~aTw~~liv~~lanl~y~ 126 (131)
T COG3788 80 ILGIILTAGRVLHAYGLHHRLSPWRASGMSATWCALIVMVLANLWYL 126 (131)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999876444888833467777777777666654
No 3
>COG3686 Predicted membrane protein [Function unknown]
Probab=99.68 E-value=4.9e-16 Score=112.59 Aligned_cols=103 Identities=22% Similarity=0.218 Sum_probs=80.5
Q ss_pred HHHHhhcCCCCCCccccccchhhhHHHhHHHHhhhhhhhhHHHHHHHHHHHHhh-hH-HHHHHHHHHHHHHHHHHhHhhc
Q 045836 42 GAARKKYKVPYPTLYAVESENKEAKLFNCVQRGHQNSLELMPVFFMLMIVGGLK-HP-CVCAVLGSLFTVTRFFYFKGYA 119 (154)
Q Consensus 42 ~~~R~k~~~~~p~~~~~~~~~~~~~~~~ra~RAH~N~~E~~p~fl~~~ll~~l~-~p-~~~~~~g~~~~~gRi~y~~gY~ 119 (154)
..+|++-+.++.....|.. .|....-+||.|||||+.|.+|.|+++.+++.+. +| ..+..+.+.|+++|++|.+.|.
T Consensus 20 ~~A~~~~g~~~Na~PRd~~-~kl~G~a~RA~~A~~N~fE~fp~FaAavl~a~l~G~~~~~~~~~A~l~i~~RllYi~~Yl 98 (125)
T COG3686 20 AYAKFEGGRRWNAGPRDFL-AKLQGLAGRANRAQQNFFETFPAFAAAVLVAHLTGNPSQAANTLAILFIAARLLYIPCYL 98 (125)
T ss_pred HHHHhhcCCcCCCCchhhh-ccCccHHHHHHHHHhhhHHhhHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555544433222221 3334467899999999999999999999999999 66 6799999999999999999999
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHHH
Q 045836 120 TGDPQKRLTIGKYGFLALLGLMVCTI 145 (154)
Q Consensus 120 ~g~p~~R~~gg~~~~~~~l~l~~~~~ 145 (154)
.|.|..|++.+..++.+...+++.+.
T Consensus 99 a~~p~lRSlvW~~gmvg~~~lfv~~~ 124 (125)
T COG3686 99 ADIPYLRSLVWLGGMVGTGALFVALA 124 (125)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999977778888777776543
No 4
>COG5331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.88 E-value=9.3 Score=28.39 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=39.0
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHhHhhcc
Q 045836 72 QRGHQNSLELMPVFFMLMIVGGLK--HPCVCAVLGSLFTVTRFFYFKGYAT 120 (154)
Q Consensus 72 ~RAH~N~~E~~p~fl~~~ll~~l~--~p~~~~~~g~~~~~gRi~y~~gY~~ 120 (154)
.+--.|.+|-=.+|-+++++.-++ .......++++|+..|..|.+-=.+
T Consensus 56 ~nnl~NqFElPVLF~alcl~L~iT~~~n~vtv~lAWiFVl~Ry~Hs~VHvt 106 (139)
T COG5331 56 SNNLANQFELPVLFYALCLLLYITQAVNTVTVNLAWIFVLFRYAHSVVHVT 106 (139)
T ss_pred HHhHHHhhhhhHHHHHHHHHHHhhcccceeeeHHHHHHHHHHHHHHHheeh
Confidence 336789999888888888877777 3478888999999999999766554
No 5
>PF15192 TMEM213: TMEM213 family
Probab=49.15 E-value=38 Score=22.93 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=20.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045836 17 PTEYGYVALVLVFYCFLNFWMGFQVGAARK 46 (154)
Q Consensus 17 p~~~~~v~l~~~l~~l~~~~~s~~V~~~R~ 46 (154)
-+||||++..+.++..-....=+.|.+.+|
T Consensus 42 vDeyGWIAAAVGWSLwFLTLILLCvdKlmK 71 (82)
T PF15192_consen 42 VDEYGWIAAAVGWSLWFLTLILLCVDKLMK 71 (82)
T ss_pred CchhhHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 379999999888886644444455666553
No 6
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.31 E-value=2.3e+02 Score=25.07 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccCCCC-CchhhhHHHHHHHH
Q 045836 98 CVCAVLGSLFTVTRFFYFKGYATGDPQ-KRLTIGKYGFLALL 138 (154)
Q Consensus 98 ~~~~~~g~~~~~gRi~y~~gY~~g~p~-~R~~gg~~~~~~~l 138 (154)
..-.++|.+-++|=+-++++|..|.|+ .|+. -+++|.-.+
T Consensus 222 yr~yvLgYvlivgliSfaVCYK~GPp~d~RS~-~ilmWtLql 262 (452)
T KOG3817|consen 222 YRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQ-TILMWTLQL 262 (452)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCcchh-hHHHHHHHH
Confidence 456888999999999999999998777 7887 666775553
No 7
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.86 E-value=30 Score=25.09 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhcC
Q 045836 33 LNFWMGFQVGAARKKYK 49 (154)
Q Consensus 33 ~~~~~s~~V~~~R~k~~ 49 (154)
+.++...+..+.|++.|
T Consensus 14 l~~~~~~~~~rRR~r~G 30 (130)
T PF12273_consen 14 LFLFLFYCHNRRRRRRG 30 (130)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 33333444555555544
No 8
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=27.00 E-value=1.1e+02 Score=20.81 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=20.6
Q ss_pred hccccCccchHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 045836 12 ATQFLPTEYGYVALVL---VFYCFLNFWMGFQVGAARKK 47 (154)
Q Consensus 12 ~~~~~p~~~~~v~l~~---~l~~l~~~~~s~~V~~~R~k 47 (154)
-.+.+|+||+..+-+. +.......+.+....+.++|
T Consensus 38 ~~~F~Pr~yAi~lP~~lll~~~~~vg~f~g~vmik~~~k 76 (78)
T PF07297_consen 38 HSFFPPREYAIILPIFLLLLGLSGVGTFLGYVMIKSKKK 76 (78)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3677899998754332 22233555666665555543
No 9
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.93 E-value=1.2e+02 Score=22.17 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 045836 31 CFLNFWMGFQVGAARKKYK 49 (154)
Q Consensus 31 ~l~~~~~s~~V~~~R~k~~ 49 (154)
++..+++.+.+.|.|||.+
T Consensus 78 Ig~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 3444566677777777754
No 10
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=23.45 E-value=46 Score=27.62 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 045836 27 LVFYCFLNFWMGFQVGAARKKYK 49 (154)
Q Consensus 27 ~~l~~l~~~~~s~~V~~~R~k~~ 49 (154)
++..+++.++.++.++|.|.+.|
T Consensus 280 ~La~lvlivLiaYli~Rrr~~~g 302 (306)
T PF01299_consen 280 ALAGLVLIVLIAYLIGRRRSRAG 302 (306)
T ss_pred HHHHHHHHHHHhheeEecccccc
Confidence 34444555677888887776653
No 11
>PF08009 CDP-OH_P_tran_2: CDP-alcohol phosphatidyltransferase 2; InterPro: IPR012616 This domain is found on CDP-alcohol phosphatidyltransferases. These enzymes catalyse the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond.
Probab=22.15 E-value=1.8e+02 Score=17.03 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhh--hHH-HHHHHHHHHHH
Q 045836 82 MPVFFMLMIVGGLK--HPC-VCAVLGSLFTV 109 (154)
Q Consensus 82 ~p~fl~~~ll~~l~--~p~-~~~~~g~~~~~ 109 (154)
+|.++...+.+.+. +|+ .....+.+|+.
T Consensus 6 lpl~~~v~l~~a~Lis~PW~tL~~~~i~Yl~ 36 (39)
T PF08009_consen 6 LPLILLVGLYAALLISYPWLTLSVLGILYLA 36 (39)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45555555544443 784 66777777765
Done!