Query 045837
Match_columns 527
No_of_seqs 505 out of 4543
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:59:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.4E-33 1.4E-37 317.4 23.0 273 74-352 48-346 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.5E-29 1.4E-33 284.4 16.8 233 99-331 139-373 (968)
3 KOG4194 Membrane glycoprotein 99.9 4.1E-29 8.8E-34 248.3 2.3 262 97-358 146-436 (873)
4 KOG4194 Membrane glycoprotein 99.9 3.6E-28 7.9E-33 241.6 3.1 258 98-356 123-410 (873)
5 KOG0444 Cytoskeletal regulator 99.9 4.7E-25 1E-29 220.8 -1.9 251 96-351 74-329 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.2E-24 2.7E-29 217.9 -0.8 254 96-355 99-356 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3.4E-24 7.3E-29 205.0 -7.4 252 96-358 64-317 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 1.9E-24 4.1E-29 206.7 -9.5 260 102-370 47-309 (565)
9 KOG4237 Extracellular matrix p 99.8 6.4E-22 1.4E-26 189.2 -1.6 252 100-351 67-359 (498)
10 KOG0618 Serine/threonine phosp 99.8 9.4E-22 2E-26 205.9 -1.3 243 100-349 241-487 (1081)
11 KOG4237 Extracellular matrix p 99.8 4.1E-21 9E-26 183.7 -1.4 249 124-373 67-361 (498)
12 PLN03210 Resistant to P. syrin 99.8 1E-17 2.2E-22 193.2 20.3 240 98-347 609-878 (1153)
13 PRK15370 E3 ubiquitin-protein 99.8 1.6E-18 3.4E-23 187.9 10.6 227 100-354 178-404 (754)
14 PRK15387 E3 ubiquitin-protein 99.8 6.5E-18 1.4E-22 182.2 15.1 218 103-354 204-438 (788)
15 PRK15370 E3 ubiquitin-protein 99.8 3.3E-18 7.1E-23 185.5 12.0 228 100-352 199-429 (754)
16 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-19 4.7E-24 179.7 -0.3 86 100-185 23-121 (319)
17 cd00116 LRR_RI Leucine-rich re 99.7 2.4E-19 5.2E-24 179.3 -0.9 250 104-353 2-293 (319)
18 PLN03210 Resistant to P. syrin 99.7 1E-16 2.3E-21 184.9 19.7 242 102-355 591-863 (1153)
19 KOG0618 Serine/threonine phosp 99.7 1.6E-19 3.5E-24 189.3 -3.1 246 97-348 261-510 (1081)
20 PRK15387 E3 ubiquitin-protein 99.7 9.7E-17 2.1E-21 173.2 11.4 222 101-354 223-461 (788)
21 KOG0617 Ras suppressor protein 99.7 7E-19 1.5E-23 150.3 -4.8 162 98-287 31-193 (264)
22 KOG0617 Ras suppressor protein 99.7 7.1E-19 1.5E-23 150.3 -4.8 182 119-328 28-213 (264)
23 KOG1909 Ran GTPase-activating 99.4 1.6E-14 3.4E-19 137.2 -1.0 245 98-351 28-311 (382)
24 KOG1259 Nischarin, modulator o 99.4 3.9E-14 8.4E-19 131.7 1.6 133 219-357 285-418 (490)
25 PLN03150 hypothetical protein; 99.4 8.8E-13 1.9E-17 142.6 9.8 118 76-194 391-512 (623)
26 KOG0532 Leucine-rich repeat (L 99.4 4.4E-14 9.5E-19 141.7 -1.4 175 122-304 73-248 (722)
27 KOG0532 Leucine-rich repeat (L 99.4 2.8E-14 6.1E-19 143.1 -3.9 172 100-279 75-247 (722)
28 COG4886 Leucine-rich repeat (L 99.3 2.4E-12 5.1E-17 132.8 7.1 175 148-329 116-292 (394)
29 COG4886 Leucine-rich repeat (L 99.3 3.4E-12 7.4E-17 131.6 8.3 196 104-308 97-295 (394)
30 KOG3207 Beta-tubulin folding c 99.2 1.2E-12 2.6E-17 127.8 -0.1 206 145-352 118-340 (505)
31 KOG3207 Beta-tubulin folding c 99.2 9.2E-13 2E-17 128.6 -1.2 208 96-303 117-339 (505)
32 KOG1259 Nischarin, modulator o 99.2 4.1E-12 8.9E-17 118.3 0.8 113 236-354 278-390 (490)
33 PLN03150 hypothetical protein; 99.2 5E-11 1.1E-15 129.1 9.2 106 244-349 420-526 (623)
34 KOG0531 Protein phosphatase 1, 99.2 3E-12 6.6E-17 132.5 -1.7 241 100-352 72-319 (414)
35 KOG1909 Ran GTPase-activating 99.1 6.3E-12 1.4E-16 119.7 -1.5 225 118-352 24-284 (382)
36 PF14580 LRR_9: Leucine-rich r 99.1 7.7E-11 1.7E-15 105.3 5.5 81 220-303 44-126 (175)
37 KOG0531 Protein phosphatase 1, 99.1 6.8E-12 1.5E-16 129.9 -2.8 239 100-351 49-290 (414)
38 PF14580 LRR_9: Leucine-rich r 99.1 9.9E-11 2.1E-15 104.6 4.6 123 218-345 19-147 (175)
39 KOG1859 Leucine-rich repeat pr 99.0 3.6E-12 7.8E-17 131.3 -7.4 131 218-354 164-295 (1096)
40 COG5238 RNA1 Ran GTPase-activa 98.9 2.1E-10 4.5E-15 105.7 -1.9 245 99-352 29-317 (388)
41 PF13855 LRR_8: Leucine rich r 98.8 3.5E-09 7.5E-14 77.8 3.9 60 125-184 2-61 (61)
42 PF13855 LRR_8: Leucine rich r 98.8 3.6E-09 7.8E-14 77.7 3.7 58 268-325 3-60 (61)
43 KOG4658 Apoptotic ATPase [Sign 98.8 3.7E-09 8.1E-14 117.2 4.7 246 99-347 544-828 (889)
44 KOG1859 Leucine-rich repeat pr 98.8 8.7E-11 1.9E-15 121.3 -7.6 126 196-327 165-292 (1096)
45 COG5238 RNA1 Ran GTPase-activa 98.7 9.5E-10 2.1E-14 101.5 -2.6 213 98-329 56-318 (388)
46 KOG4658 Apoptotic ATPase [Sign 98.7 7E-09 1.5E-13 115.1 1.9 153 96-251 519-677 (889)
47 KOG2982 Uncharacterized conser 98.6 1.6E-08 3.4E-13 94.7 1.3 107 101-207 46-158 (418)
48 KOG2120 SCF ubiquitin ligase, 98.6 1.9E-09 4.2E-14 100.7 -4.9 58 125-182 186-244 (419)
49 KOG2120 SCF ubiquitin ligase, 98.3 4.7E-09 1E-13 98.2 -8.6 196 100-317 185-390 (419)
50 KOG4579 Leucine-rich repeat (L 98.2 6.9E-08 1.5E-12 80.4 -3.2 84 243-329 54-138 (177)
51 KOG4579 Leucine-rich repeat (L 98.2 3.4E-07 7.4E-12 76.4 0.5 111 97-210 50-161 (177)
52 KOG2982 Uncharacterized conser 98.1 2.9E-07 6.3E-12 86.4 -1.8 230 122-353 43-292 (418)
53 KOG1644 U2-associated snRNP A' 98.0 6.4E-06 1.4E-10 73.4 5.2 100 221-322 45-148 (233)
54 KOG3665 ZYG-1-like serine/thre 97.9 5.7E-06 1.2E-10 89.9 2.9 110 240-351 146-263 (699)
55 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 3.9E-10 53.4 3.1 12 244-255 3-14 (44)
56 KOG3671 Actin regulatory prote 97.8 0.002 4.3E-08 64.7 18.4 25 87-111 64-88 (569)
57 KOG1644 U2-associated snRNP A' 97.8 3.3E-05 7.3E-10 69.0 5.5 128 219-350 20-152 (233)
58 PF12799 LRR_4: Leucine Rich r 97.8 2.9E-05 6.4E-10 52.4 3.7 38 266-304 1-38 (44)
59 PRK15386 type III secretion pr 97.7 5.3E-05 1.1E-09 76.3 6.5 137 144-301 48-188 (426)
60 KOG3665 ZYG-1-like serine/thre 97.6 2E-05 4.3E-10 85.7 2.0 87 218-306 173-266 (699)
61 PRK15386 type III secretion pr 97.5 0.00021 4.5E-09 72.1 7.2 136 119-277 47-188 (426)
62 KOG3671 Actin regulatory prote 97.5 0.0027 5.8E-08 63.8 14.7 12 125-136 78-89 (569)
63 PF13306 LRR_5: Leucine rich r 97.3 0.00054 1.2E-08 58.3 6.5 114 219-338 13-126 (129)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00018 4E-09 67.0 3.3 98 220-320 45-149 (260)
65 PF13306 LRR_5: Leucine rich r 97.1 0.0013 2.8E-08 55.9 6.4 112 236-353 6-117 (129)
66 KOG2739 Leucine-rich acidic nu 97.1 0.00026 5.6E-09 66.0 1.8 90 238-329 39-131 (260)
67 KOG2123 Uncharacterized conser 97.0 2.1E-05 4.6E-10 73.4 -5.4 89 99-191 18-107 (388)
68 KOG2123 Uncharacterized conser 97.0 3.5E-05 7.7E-10 72.0 -4.3 96 220-320 21-123 (388)
69 KOG4341 F-box protein containi 97.0 2.9E-05 6.4E-10 76.5 -5.6 84 100-183 138-227 (483)
70 KOG4308 LRR-containing protein 96.6 2.5E-05 5.4E-10 81.4 -9.5 179 126-304 89-304 (478)
71 KOG4308 LRR-containing protein 96.6 2.2E-05 4.7E-10 81.8 -9.9 180 149-328 88-304 (478)
72 KOG4341 F-box protein containi 96.4 0.00027 5.8E-09 69.9 -3.4 250 97-348 161-436 (483)
73 KOG1947 Leucine rich repeat pr 95.9 0.0005 1.1E-08 72.6 -4.8 15 263-277 359-373 (482)
74 KOG1947 Leucine rich repeat pr 95.3 0.0012 2.5E-08 69.8 -4.7 60 195-254 243-307 (482)
75 PF00560 LRR_1: Leucine Rich R 94.8 0.015 3.2E-07 32.6 1.1 12 268-279 2-13 (22)
76 KOG0473 Leucine-rich repeat pr 94.5 0.00064 1.4E-08 62.2 -7.7 86 238-326 38-123 (326)
77 PF00560 LRR_1: Leucine Rich R 94.3 0.023 5E-07 31.8 1.1 12 126-137 2-13 (22)
78 KOG0473 Leucine-rich repeat pr 93.4 0.0019 4.1E-08 59.2 -6.7 87 96-185 38-124 (326)
79 PF08263 LRRNT_2: Leucine rich 92.8 0.11 2.4E-06 34.6 2.7 20 72-91 21-43 (43)
80 KOG3864 Uncharacterized conser 92.5 0.02 4.4E-07 51.6 -1.6 83 100-182 101-186 (221)
81 KOG3864 Uncharacterized conser 92.4 0.014 3E-07 52.6 -2.6 81 243-323 102-185 (221)
82 PF13504 LRR_7: Leucine rich r 90.3 0.19 4.1E-06 26.1 1.4 13 173-185 2-14 (17)
83 KOG4242 Predicted myosin-I-bin 90.0 1.3 2.8E-05 45.3 8.0 18 100-117 165-182 (553)
84 KOG4242 Predicted myosin-I-bin 88.8 1 2.2E-05 46.0 6.3 245 105-351 192-481 (553)
85 smart00369 LRR_TYP Leucine-ric 88.6 0.36 7.7E-06 28.1 1.9 19 172-191 2-20 (26)
86 smart00370 LRR Leucine-rich re 88.6 0.36 7.7E-06 28.1 1.9 19 172-191 2-20 (26)
87 smart00369 LRR_TYP Leucine-ric 86.9 0.66 1.4E-05 26.9 2.3 13 291-303 3-15 (26)
88 smart00370 LRR Leucine-rich re 86.9 0.66 1.4E-05 26.9 2.3 13 291-303 3-15 (26)
89 PF13516 LRR_6: Leucine Rich r 85.7 0.19 4.2E-06 28.6 -0.4 13 291-303 3-15 (24)
90 PRK09718 hypothetical protein; 81.3 2.6 5.6E-05 43.5 5.2 31 245-279 211-241 (512)
91 smart00365 LRR_SD22 Leucine-ri 76.6 2.1 4.5E-05 25.1 1.7 13 291-303 3-15 (26)
92 PRK09718 hypothetical protein; 75.8 8.4 0.00018 39.8 6.9 74 173-256 166-242 (512)
93 KOG3763 mRNA export factor TAP 74.4 1.5 3.3E-05 45.7 1.3 65 263-329 215-285 (585)
94 KOG3763 mRNA export factor TAP 73.1 2.2 4.7E-05 44.6 2.0 62 241-304 217-284 (585)
95 smart00368 LRR_RI Leucine rich 68.7 3 6.5E-05 24.7 1.2 13 291-303 3-15 (28)
96 PF07172 GRP: Glycine rich pro 60.9 13 0.00028 29.6 3.8 25 1-26 1-25 (95)
97 PHA03378 EBNA-3B; Provisional 59.8 2.6E+02 0.0057 30.4 15.1 7 345-351 641-647 (991)
98 smart00364 LRR_BAC Leucine-ric 54.5 8.5 0.00018 22.5 1.3 15 340-354 4-18 (26)
99 KOG1665 AFH1-interacting prote 52.8 17 0.00036 33.5 3.5 13 243-255 217-229 (302)
100 KOG1665 AFH1-interacting prote 50.2 18 0.00038 33.3 3.3 13 243-255 197-209 (302)
101 PRK15196 secreted effector pro 43.7 41 0.00088 33.9 5.1 8 129-136 152-159 (350)
102 TIGR00864 PCC polycystin catio 41.0 18 0.0004 45.4 2.5 32 272-303 1-32 (2740)
103 smart00367 LRR_CC Leucine-rich 30.5 39 0.00084 19.3 1.6 10 291-300 3-12 (26)
104 PF13956 Ibs_toxin: Toxin Ibs, 30.1 34 0.00074 17.9 1.1 12 6-17 5-16 (19)
105 TIGR00864 PCC polycystin catio 30.1 34 0.00074 43.3 2.4 32 106-137 1-32 (2740)
106 PRK15196 secreted effector pro 27.4 1.3E+02 0.0027 30.5 5.6 8 104-111 105-112 (350)
107 PRK10299 PhoPQ regulatory prot 27.2 52 0.0011 22.1 1.8 21 1-21 1-23 (47)
108 PRK15197 secreted effector pro 26.7 1.1E+02 0.0023 30.0 4.8 13 291-303 261-273 (291)
109 PF11714 Inhibitor_I53: Thromb 25.6 61 0.0013 23.7 2.1 20 1-20 1-20 (78)
110 PRK15197 secreted effector pro 24.8 1.2E+02 0.0026 29.7 4.7 54 267-327 220-273 (291)
111 PRK14762 membrane protein; Pro 23.1 95 0.0021 17.8 2.1 13 1-13 1-13 (27)
112 PRK15377 E3 ubiquitin-protein 23.1 97 0.0021 34.3 4.0 11 268-278 314-324 (782)
113 KOG4462 WASP-interacting prote 22.7 7.3E+02 0.016 24.9 9.4 87 419-507 287-373 (437)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.4e-33 Score=317.35 Aligned_cols=273 Identities=30% Similarity=0.476 Sum_probs=183.2
Q ss_pred CCCCC-CCCCccccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccc--------
Q 045837 74 QGNWV-GTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESL-------- 144 (527)
Q Consensus 74 ~~~w~-~~~~c~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~-------- 144 (527)
+.+|. +.++|.|.|+.|.. ..+++.|+|++|.+.+.++..|..+++|++|+|++|++.+.++..+
T Consensus 48 ~~~w~~~~~~c~w~gv~c~~------~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~ 121 (968)
T PLN00113 48 LSNWNSSADVCLWQGITCNN------SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLR 121 (968)
T ss_pred CCCCCCCCCCCcCcceecCC------CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCC
Confidence 34785 56899999999963 1245555555555555444445555555555555555544443332
Q ss_pred ---------------cCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc-cccchhhccccccc
Q 045837 145 ---------------SNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFS 208 (527)
Q Consensus 145 ---------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~ 208 (527)
+.+.+|++|+|++|.+.+.++..+..+.+|++|+|++|.+.+.++..+.. .+|++|+|++|.+.
T Consensus 122 ~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 201 (968)
T PLN00113 122 YLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201 (968)
T ss_pred EEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc
Confidence 23445555555555555555556666667777777777666666665554 56777777777776
Q ss_pred cccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccC
Q 045837 209 SWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFS 287 (527)
Q Consensus 209 ~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 287 (527)
+.++..++. .+|++|+|++|++.+.++..|+++.+|++|+|++|.+.+.++..++++++|++|+|++|++++.++..+.
T Consensus 202 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 281 (968)
T PLN00113 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281 (968)
T ss_pred CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh
Confidence 666655543 4477777777777777777777777777777777777767777777777777777777777777777777
Q ss_pred CCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837 288 SLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 288 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 352 (527)
.+.+|++|+|++|.+.+.++..+.++.+|++|++++|.+.+..+..+..+.+|+.|++++|.+++
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 77777777777777777777777777777777777777777777777777788888888887764
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=6.5e-29 Score=284.37 Aligned_cols=233 Identities=29% Similarity=0.466 Sum_probs=123.4
Q ss_pred cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEe
Q 045837 99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLD 178 (527)
Q Consensus 99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 178 (527)
+.+|++|+|++|.+.+.++..++++++|++|+|++|.+.+.++..|.++.+|++|+|++|++.+.++..+.++.+|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 44555555555555555555555566666666666655555555555566666666666655555555555555566666
Q ss_pred cccCCCCCCcchhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837 179 LRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG 256 (527)
Q Consensus 179 Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 256 (527)
|++|.+.+.++..+.. .+|++|+|++|.+.+.++..++. .+|++|++++|++.+.++..+.++.+|++|+|++|.+.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 6555555555554444 45555555555555544444433 235555555555555444455555555555555555554
Q ss_pred CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCC
Q 045837 257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGN 331 (527)
Q Consensus 257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 331 (527)
.++..+.++++|++|++++|.+++.++..+..+.+|+.|+|++|.+++.++..+..+.+|+.|++++|++++..+
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 455445555555555555555544444444444455555555554444444444444444444444444444333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=4.1e-29 Score=248.29 Aligned_cols=262 Identities=18% Similarity=0.221 Sum_probs=170.2
Q ss_pred CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837 97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY 176 (527)
Q Consensus 97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 176 (527)
..+..|+.|||+.|.|+.+-...|..-.+|++|+|++|+|+.+.-+.|.++.+|.+|.|++|+++..-...|.+|.+|+.
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 34455566666666655544445554455666666666665555555555555666666666655444444555555555
Q ss_pred EecccCCCCC-----------------------Ccchhhhc--cccchhhccccccccccccc-cCCCCcceEeccCCcC
Q 045837 177 LDLRYNNFEG-----------------------EVPRELFK--MKLDAIFLNNNRFSSWIPET-IGESTVSVVTFAHNNF 230 (527)
Q Consensus 177 L~Ls~n~i~~-----------------------~~p~~~~~--~~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~L~~n~l 230 (527)
|+|..|.|.- .+.+..|. .++++|+|..|+++.....+ |+...|+.|+|++|.|
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 5555555531 22222222 35666666666665543333 3445567777777777
Q ss_pred CccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcch---
Q 045837 231 SGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVS--- 307 (527)
Q Consensus 231 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~--- 307 (527)
..+..+++.-..+|++|+|++|+|+..-+..|..+..|++|+|++|.+...-...|.++++|+.|||++|.|...+.
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch
Confidence 76666666666677777777777775556666667777777777777765555567778888888888888876543
Q ss_pred hhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCC
Q 045837 308 EQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKW 358 (527)
Q Consensus 308 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 358 (527)
..|.++++|+.|+|.+|+|..+....|.++.+|+.|||.+|.|.++....+
T Consensus 386 ~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 357788899999999999999888899999999999999999987654433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=3.6e-28 Score=241.56 Aligned_cols=258 Identities=21% Similarity=0.196 Sum_probs=214.0
Q ss_pred CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837 98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL 177 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 177 (527)
...+|+.|+|.+|.|..+-.+.+..+..|+.|||+.|.|+.+-..+|..-.+|++|+|++|+|+..--+.|.++.+|..|
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 34579999999999988877888999999999999999998777788888899999999999998888889999999999
Q ss_pred ecccCCCCCCcchhhhc--cccchhhccccccccccc-------------------------cccCCCCcceEeccCCcC
Q 045837 178 DLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIP-------------------------ETIGESTVSVVTFAHNNF 230 (527)
Q Consensus 178 ~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~-------------------------~~~~~~~L~~L~L~~n~l 230 (527)
.|++|.|+ .++...|. .+|+.|+|..|+|.-.-. .+++..++++|+|+.|++
T Consensus 203 kLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 203 KLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred ecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 99999999 78777666 588999988888753211 222445677888888888
Q ss_pred CccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhh
Q 045837 231 SGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQI 310 (527)
Q Consensus 231 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l 310 (527)
...--.++.+++.|+.|+||+|.|..+..+.|....+|++|||++|+|+..-+..|..+..|+.|+|++|.|+.+....|
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence 87666777888888888888888887777888888888888888888887777778888888888888888887777788
Q ss_pred hCCCCCcEEEecCcccCCCCC---CCCCCCCCCceecCCCCCCCCCCCC
Q 045837 311 CKLPNINNFTFSYNYFQGLGN---ECIPGSKEGGVFDDTSNCLAQRPSQ 356 (527)
Q Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~~~ 356 (527)
..+.+|++|||++|.|...+. ..|.++++|+.|++.+|+|..++..
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence 888999999999998876543 3478899999999999999877644
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=4.7e-25 Score=220.84 Aligned_cols=251 Identities=22% Similarity=0.321 Sum_probs=142.4
Q ss_pred CCCcceEEEEEcCCCCcC-CCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837 96 NSNITVVAGIDLNGNDIA-GYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL 174 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 174 (527)
.+.+.+|+.+++++|++. .-+|..+..+..|..|||++|++. ..|..+.+.+++-+|+|++|+|..+--..|.+|..|
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence 345666777777777663 235666777777777777777776 455666666777777777777763333345566777
Q ss_pred cEEecccCCCCCCcchhhhc-cccchhhcccccccccccccc-CCCCcceEeccCCcC-CccCCCCCCCCCCCcEEEccc
Q 045837 175 RYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAHNNF-SGCVPRSIGNMPNVNEIILSN 251 (527)
Q Consensus 175 ~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~Ls~ 251 (527)
-+|||++|++. .+|..+.. ..|++|.|++|.+.-.--..+ ...+|+.|.+++.+= ...++.++..+.+|..+|||.
T Consensus 153 LfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 153 LFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred hhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 77777777776 66665555 567777777776532111111 122345555544322 124455555556666666666
Q ss_pred CCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccC-CCC
Q 045837 252 NDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ-GLG 330 (527)
Q Consensus 252 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~ 330 (527)
|++. .+|+.+.++.+|+.|+||+|+|+ .+.-......+|++|+||+|+++ .+|..++++++|+.|.+.+|+++ +.+
T Consensus 232 N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 232 NNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred cCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence 6665 55666666666666666666655 33333344455566666666655 34555555555555555555544 122
Q ss_pred CCCCCCCCCCceecCCCCCCC
Q 045837 331 NECIPGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 331 ~~~~~~l~~L~~L~l~~N~l~ 351 (527)
+..++.+..|+++...+|.+.
T Consensus 309 PSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred ccchhhhhhhHHHHhhccccc
Confidence 344444444444444444443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.2e-24 Score=217.86 Aligned_cols=254 Identities=22% Similarity=0.263 Sum_probs=190.4
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 175 (527)
...++.|+.|||++|++.. .|..+.+-+++-.|+|++|+|.++-...|-+|..|-+|||++|++. .+|..+..|.+|+
T Consensus 99 iF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQ 176 (1255)
T ss_pred hcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhh
Confidence 5578899999999999976 6788999999999999999999776667789999999999999998 7788888999999
Q ss_pred EEecccCCCCCCcchhhhc-cccchhhccccccc-ccccccc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837 176 YLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFS-SWIPETI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN 252 (527)
Q Consensus 176 ~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 252 (527)
.|+|++|.+.-.--..+-. ++|+.|++++.+-+ ..++..+ +..+|..++|+.|++. .+++.+.++.+|+.|+||+|
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcC
Confidence 9999999875111111111 47788888776543 2233333 3356788888888877 66777777888888888888
Q ss_pred CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC-cchhhhhCCCCCcEEEecCcccCCCCC
Q 045837 253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG-YVSEQICKLPNINNFTFSYNYFQGLGN 331 (527)
Q Consensus 253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~ 331 (527)
.|+ ++....+...+|++|+||+|+++ .+|..++.+++|+.|++.+|+++- -+|..++++..|+++..++|.+. .++
T Consensus 256 ~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVP 332 (1255)
T KOG0444|consen 256 KIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVP 332 (1255)
T ss_pred cee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCc
Confidence 887 55555666777888888888887 777777788888888888887652 25666777777777777777664 446
Q ss_pred CCCCCCCCCceecCCCCCCCCCCC
Q 045837 332 ECIPGSKEGGVFDDTSNCLAQRPS 355 (527)
Q Consensus 332 ~~~~~l~~L~~L~l~~N~l~~~~~ 355 (527)
..++.|..|+.|.|+.|.+...+.
T Consensus 333 EglcRC~kL~kL~L~~NrLiTLPe 356 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLITLPE 356 (1255)
T ss_pred hhhhhhHHHHHhcccccceeechh
Confidence 667777777777777777776653
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=3.4e-24 Score=204.98 Aligned_cols=252 Identities=21% Similarity=0.320 Sum_probs=206.4
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 175 (527)
..++..+++|++.+|.+.. ++.+++.+..++.|++++|++. .+++.++.+..|+.|++++|++. .+++.++.+..|.
T Consensus 64 l~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLE 140 (565)
T ss_pred hhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhh
Confidence 5567788888998888876 5668888888888999999888 66778888888999999999888 6677788888899
Q ss_pred EEecccCCCCCCcchhhhc-cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCC
Q 045837 176 YLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDL 254 (527)
Q Consensus 176 ~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 254 (527)
.|+..+|+++ .++..++. .+|..+++.+|.+....+..+....|++|++..|.+. .+|..++.+.+|+-|||..|+|
T Consensus 141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc
Confidence 9999999988 66766665 6888999999998888777777677899998888777 6778889999999999999999
Q ss_pred CCCChhhccCCCCCCEEEccCCcccccCCcc-cCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCC
Q 045837 255 MGCLPSEIGWLKKLTVFDASSNSFYGSVPQS-FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNEC 333 (527)
Q Consensus 255 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 333 (527)
. .+| +|.++..|++|+++.|+|. .++.. ..++.+|..|||..|+++ ..|+.++-+.+|++||+++|.+++.. ..
T Consensus 219 ~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp-~s 293 (565)
T KOG0472|consen 219 R-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLP-YS 293 (565)
T ss_pred c-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCC-cc
Confidence 8 777 7888999999999999887 44544 448888999999999998 56778888888999999999998874 45
Q ss_pred CCCCCCCceecCCCCCCCCCCCCCC
Q 045837 334 IPGSKEGGVFDDTSNCLAQRPSQKW 358 (527)
Q Consensus 334 ~~~l~~L~~L~l~~N~l~~~~~~~~ 358 (527)
++++ .|+.|-+.||.+..+-....
T Consensus 294 Lgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred cccc-eeeehhhcCCchHHHHHHHH
Confidence 7777 88888899998886554433
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=1.9e-24 Score=206.71 Aligned_cols=260 Identities=21% Similarity=0.285 Sum_probs=225.2
Q ss_pred EEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEeccc
Q 045837 102 VAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRY 181 (527)
Q Consensus 102 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 181 (527)
++.++|++|.+... .+.+.++..|.+|++.+|++. ..+.+++.+..++.|++++|.+. .+++.+..+.+|+.|++++
T Consensus 47 l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 77899999999764 457889999999999999998 55668999999999999999998 7888889999999999999
Q ss_pred CCCCCCcchhhhc-cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChh
Q 045837 182 NNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS 260 (527)
Q Consensus 182 n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 260 (527)
|.+. .+++.++. ..|+.++..+|+++......+...++..|++.+|++....++.+. |+.|++||+..|.++ .+|.
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~ 200 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPP 200 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCCh
Confidence 9998 67777766 799999999999998777766777899999999999966655555 999999999999998 8999
Q ss_pred hccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCC
Q 045837 261 EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEG 340 (527)
Q Consensus 261 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (527)
.++.+.+|+-|+|.+|+|. .+| .|.++..|++|+++.|+|.-...+...++.+|.+|||++|+++.. |..++-+++|
T Consensus 201 ~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL 277 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSL 277 (565)
T ss_pred hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-chHHHHhhhh
Confidence 9999999999999999998 666 899999999999999999855555566999999999999999986 6667888999
Q ss_pred ceecCCCCCCCCCCCCCCCCcc--cccccCCC
Q 045837 341 GVFDDTSNCLAQRPSQKWATTC--SPVVSNPV 370 (527)
Q Consensus 341 ~~L~l~~N~l~~~~~~~~~~~~--~~~~~np~ 370 (527)
.+||+++|.|++.+.....-.- ..+.+||.
T Consensus 278 ~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPl 309 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNLHLKFLALEGNPL 309 (565)
T ss_pred hhhcccCCccccCCcccccceeeehhhcCCch
Confidence 9999999999999877655422 23456765
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=6.4e-22 Score=189.23 Aligned_cols=252 Identities=17% Similarity=0.153 Sum_probs=187.5
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeec-CcCcccCCcccccCCcccEEe
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSN-NRLVGSFPNVCLSWTSLRYLD 178 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ 178 (527)
...+.|+|..|+|+.+-+..|..+++|+.|||++|+|+.+-+++|.++..|.+|-+.+ |+|+....+.|.+|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3567899999999998888999999999999999999999999999999988877766 999977778899999999999
Q ss_pred cccCCCCCCcchhhhc-cccchhhccccccccccccccC-CCCcceEeccCCcCCc------------cCCCCCCCCCCC
Q 045837 179 LRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSG------------CVPRSIGNMPNV 244 (527)
Q Consensus 179 Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~------------~~~~~l~~l~~L 244 (527)
+.-|++.....+.+.. .+|..|.+..|.+.......+. ...++.+.+..|.+.. ..+..++.+.-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 9999888444343333 5788888888887665443443 3346666666665221 111112221111
Q ss_pred cEEEc-------------------------ccCCCCCCCh-hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837 245 NEIIL-------------------------SNNDLMGCLP-SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS 298 (527)
Q Consensus 245 ~~L~L-------------------------s~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 298 (527)
.-..| +.+...++.| ..|..+.+|++|+|++|+|+++-..+|.++..|++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 11111 1122222333 357788889999999999988888888888899999999
Q ss_pred CCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCC
Q 045837 299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 351 (527)
.|+|..+....|.++..|++|+|.+|+|+...+..|..+..|..|++-.|.+.
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99888777778888888999999999998888888888888888888777765
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=9.4e-22 Score=205.87 Aligned_cols=243 Identities=21% Similarity=0.315 Sum_probs=157.8
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
.+++.+++++|++++ +++.++.+.+|+.|++.+|+++ .++..+....+|+.|++.+|.+. -++....+++.|+.|+|
T Consensus 241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 466677777777766 3466677777777777777774 45555666667777777777776 55666677889999999
Q ss_pred ccCCCCCCcchhhhc---cccchhhccccccccccccc-cCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC
Q 045837 180 RYNNFEGEVPRELFK---MKLDAIFLNNNRFSSWIPET-IGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM 255 (527)
Q Consensus 180 s~n~i~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 255 (527)
..|+|. .+++.++. ..|+.|+.+.|++....... .....|+.|++.+|.+++..-..|.++.+|+.|+|++|++.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 999987 77776554 24666666666665432111 11234777777777777666666677777777777777776
Q ss_pred CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCC
Q 045837 256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIP 335 (527)
Q Consensus 256 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (527)
..-...+.++..|++|+||||+++ .++..+..+..|++|...+|+|.. .| .+..++.|+.+|++.|+|+...-..-.
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 444445666777777777777776 555666666667777666666663 33 566666667777777666654332223
Q ss_pred CCCCCceecCCCCC
Q 045837 336 GSKEGGVFDDTSNC 349 (527)
Q Consensus 336 ~l~~L~~L~l~~N~ 349 (527)
.+++|++||++||.
T Consensus 474 p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNT 487 (1081)
T ss_pred CCcccceeeccCCc
Confidence 33666666666665
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=4.1e-21 Score=183.73 Aligned_cols=249 Identities=17% Similarity=0.271 Sum_probs=196.0
Q ss_pred CCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEeccc-CCCCCCcchhhhc--cccchh
Q 045837 124 SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRY-NNFEGEVPRELFK--MKLDAI 200 (527)
Q Consensus 124 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~p~~~~~--~~L~~L 200 (527)
..-.+|+|..|.|+.+-+.+|..+++|+.|||++|+|+.+-++.|.++.+|..|-+.+ |+|+ .++...|. ..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999988777666 9998 88887777 689999
Q ss_pred hccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC------------CCChhhccCCCC
Q 045837 201 FLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM------------GCLPSEIGWLKK 267 (527)
Q Consensus 201 ~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~------------~~~p~~~~~l~~ 267 (527)
.+.-|++.-.....+.. .++..|.+..|.+......+|..+.+++.+.+..|.+- ...+..+++..-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 99999998776666654 45888999999999666668999999999998888722 111222222211
Q ss_pred ----------------------CCEE---EccCCcccccCC-cccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEe
Q 045837 268 ----------------------LTVF---DASSNSFYGSVP-QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTF 321 (527)
Q Consensus 268 ----------------------L~~L---~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 321 (527)
++.+ -.+.+...++.| ..|..+.+|+.|+|++|+|+++...+|.++.++++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1111 112222222333 24788999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCCC----cccccccCCCCCC
Q 045837 322 SYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWAT----TCSPVVSNPVDCS 373 (527)
Q Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----~~~~~~~np~~C~ 373 (527)
..|+|.......|.++..|+.|+|.+|+|+......+.. ....+.+|||.|+
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 999999888888999999999999999999654333332 3345679999997
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=1e-17 Score=193.20 Aligned_cols=240 Identities=17% Similarity=0.168 Sum_probs=141.9
Q ss_pred CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837 98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL 177 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 177 (527)
...+|+.|+|.++.+.. +...+..+.+|++|+|++++..+.++ .++.+.+|++|+|++|.....++..+..+.+|++|
T Consensus 609 ~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 45678888888887764 45566778888888888775544555 37778888888888876655777777788888888
Q ss_pred ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCC-------------------
Q 045837 178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSI------------------- 238 (527)
Q Consensus 178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l------------------- 238 (527)
++++|...+.++..+...+|+.|+|++|.....++.. ..+|++|+|++|.+.. ++..+
T Consensus 687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred eCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccc-ccccccccccccccccccchhhcc
Confidence 8887654446666554466777777776543333321 1235555555555432 11110
Q ss_pred -----------CCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcch
Q 045837 239 -----------GNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVS 307 (527)
Q Consensus 239 -----------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 307 (527)
....+|++|+|++|...+.+|..++++++|+.|+|++|...+.++..+ .+.+|++|+|++|.....++
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 012356666666665555666667777777777777664333455443 45556666665553322222
Q ss_pred hhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCC
Q 045837 308 EQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTS 347 (527)
Q Consensus 308 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 347 (527)
.. ..+|++|+|++|.++.+ +..+..+.+|+.|++++
T Consensus 843 ~~---~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 843 DI---STNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred cc---ccccCEeECCCCCCccC-hHHHhcCCCCCEEECCC
Confidence 21 23455555555555432 33444555555555554
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=1.6e-18 Score=187.92 Aligned_cols=227 Identities=22% Similarity=0.371 Sum_probs=133.8
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
.+.+.|+|++++++. +|..+. .+|+.|+|++|+|+. ++..+. .+|++|+|++|+++ .++..+. .+|+.|+|
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 345677777777765 344342 467777777777774 333332 46777777777776 3444432 46777777
Q ss_pred ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCCh
Q 045837 180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP 259 (527)
Q Consensus 180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 259 (527)
++|.+. .++..+. .+|+.|+|++|+++. ++..+. .+|++|++++|++.+ ++..+. .+|++|++++|.++ .++
T Consensus 249 s~N~L~-~LP~~l~-s~L~~L~Ls~N~L~~-LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP 320 (754)
T PRK15370 249 SINRIT-ELPERLP-SALQSLDLFHNKISC-LPENLP-EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALP 320 (754)
T ss_pred cCCccC-cCChhHh-CCCCEEECcCCccCc-cccccC-CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCC
Confidence 777776 5665443 467777777777764 333332 357777777777764 333332 35666777777666 344
Q ss_pred hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCC
Q 045837 260 SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKE 339 (527)
Q Consensus 260 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (527)
..+ ..+|++|++++|.+++ ++..+. .+|+.|+|++|+|+. ++..+. .+|++|+|++|+|+.+.. .+. ..
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt~LP~-~l~--~s 389 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALTNLPE-NLP--AA 389 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCCCCCH-hHH--HH
Confidence 332 2466666777766663 444432 466667777766663 343332 356667777766665432 222 24
Q ss_pred CceecCCCCCCCCCC
Q 045837 340 GGVFDDTSNCLAQRP 354 (527)
Q Consensus 340 L~~L~l~~N~l~~~~ 354 (527)
|+.|++++|.|+.++
T Consensus 390 L~~LdLs~N~L~~LP 404 (754)
T PRK15370 390 LQIMQASRNNLVRLP 404 (754)
T ss_pred HHHHhhccCCcccCc
Confidence 666666666666554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=6.5e-18 Score=182.16 Aligned_cols=218 Identities=20% Similarity=0.241 Sum_probs=100.4
Q ss_pred EEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccc-------------
Q 045837 103 AGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCL------------- 169 (527)
Q Consensus 103 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------------- 169 (527)
..|+|++++++. +|..+. .+|+.|++.+|+|+. ++. ...+|++|+|++|+|+ .++..+.
T Consensus 204 ~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchh
Confidence 345666665553 444443 245555665555553 221 1345555555555555 2222110
Q ss_pred ----cCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCc
Q 045837 170 ----SWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVN 245 (527)
Q Consensus 170 ----~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 245 (527)
...+|+.|+|++|+++ .++.. ..+|+.|+|++|++++. +.. ..+|+.|++++|++.+ ++.. ..+|+
T Consensus 276 ~Lp~lp~~L~~L~Ls~N~Lt-~LP~~--p~~L~~LdLS~N~L~~L-p~l--p~~L~~L~Ls~N~L~~-LP~l---p~~Lq 345 (788)
T PRK15387 276 HLPALPSGLCKLWIFGNQLT-SLPVL--PPGLQELSVSDNQLASL-PAL--PSELCKLWAYNNQLTS-LPTL---PSGLQ 345 (788)
T ss_pred hhhhchhhcCEEECcCCccc-ccccc--ccccceeECCCCccccC-CCC--cccccccccccCcccc-cccc---ccccc
Confidence 0133444555555554 33321 13566666666665542 111 1124444444444442 2211 13566
Q ss_pred EEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcc
Q 045837 246 EIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNY 325 (527)
Q Consensus 246 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~ 325 (527)
+|+|++|+|+ .+|.. ..+|+.|++++|+|+ .++.. ..+|+.|+|++|+|+++ +.. ..+|+.|++++|+
T Consensus 346 ~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 346 ELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSL-PVL---PSELKELMVSGNR 413 (788)
T ss_pred eEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCC-CCc---ccCCCEEEccCCc
Confidence 6777777666 34432 234455555555554 23322 13455666666655532 221 2345555555555
Q ss_pred cCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837 326 FQGLGNECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 326 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
|+++ +.. ..+|+.|++++|+|+.++
T Consensus 414 LssI-P~l---~~~L~~L~Ls~NqLt~LP 438 (788)
T PRK15387 414 LTSL-PML---PSGLLSLSVYRNQLTRLP 438 (788)
T ss_pred CCCC-Ccc---hhhhhhhhhccCcccccC
Confidence 5543 221 123445555555555544
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=3.3e-18 Score=185.47 Aligned_cols=228 Identities=22% Similarity=0.355 Sum_probs=178.3
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
.+|+.|+|++|+++. ++..+. .+|++|+|++|+|+. ++..+. .+|++|+|++|++. .++..+. .+|++|+|
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 478999999999986 454443 589999999999984 454443 47999999999998 5666554 58999999
Q ss_pred ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCCh
Q 045837 180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP 259 (527)
Q Consensus 180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 259 (527)
++|+++ .++..+. .+|+.|+|++|+++.. +..+. .+|++|++++|++.. ++..+. .+|++|++++|.++ .++
T Consensus 270 s~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~L-P~~lp-~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt-~LP 341 (754)
T PRK15370 270 FHNKIS-CLPENLP-EELRYLSVYDNSIRTL-PAHLP-SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALT-SLP 341 (754)
T ss_pred cCCccC-ccccccC-CCCcEEECCCCccccC-cccch-hhHHHHHhcCCcccc-CCcccc--ccceeccccCCccc-cCC
Confidence 999998 6776554 5899999999999864 33222 368999999999985 444333 58999999999998 466
Q ss_pred hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCC---CCCCCC
Q 045837 260 SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLG---NECIPG 336 (527)
Q Consensus 260 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~---~~~~~~ 336 (527)
..+ ..+|+.|+|++|+|+ .++..+. .+|++|+|++|+|+++ +..+.. .|+.|++++|+|+++. +.++..
T Consensus 342 ~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L-P~~l~~--sL~~LdLs~N~L~~LP~sl~~~~~~ 413 (754)
T PRK15370 342 ASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL-PENLPA--ALQIMQASRNNLVRLPESLPHFRGE 413 (754)
T ss_pred hhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC-CHhHHH--HHHHHhhccCCcccCchhHHHHhhc
Confidence 655 379999999999998 5666553 6899999999999954 544543 6899999999998652 223445
Q ss_pred CCCCceecCCCCCCCC
Q 045837 337 SKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 337 l~~L~~L~l~~N~l~~ 352 (527)
+..+..|++.+|.|+.
T Consensus 414 ~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 414 GPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCCccEEEeeCCCccH
Confidence 5788999999999973
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2.1e-19 Score=179.69 Aligned_cols=86 Identities=21% Similarity=0.155 Sum_probs=43.8
Q ss_pred ceEEEEEcCCCCcCCC----CccccCCCCCCCEEEccCCcccc------cccccccCCCCCcEEEeecCcCcccCCcccc
Q 045837 100 TVVAGIDLNGNDIAGY----FPAELGWLSDLALFHVNSNRFCG------IIPESLSNWKLIYEFDVSNNRLVGSFPNVCL 169 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 169 (527)
..|+.|+|+++.++.. +...+...++|++|+++++.+.+ .+...+..+.+|++|+|++|.+.+.....+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 4466666666665332 22334445556666666655541 1223444555666666666665533333333
Q ss_pred cCCc---ccEEecccCCCC
Q 045837 170 SWTS---LRYLDLRYNNFE 185 (527)
Q Consensus 170 ~l~~---L~~L~Ls~n~i~ 185 (527)
.+.+ |++|++++|.++
T Consensus 103 ~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHhccCcccEEEeeCCccc
Confidence 3333 666666666554
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=2.4e-19 Score=179.34 Aligned_cols=250 Identities=18% Similarity=0.178 Sum_probs=147.2
Q ss_pred EEEcCCCCcCC-CCccccCCCCCCCEEEccCCccccc----ccccccCCCCCcEEEeecCcCcc------cCCcccccCC
Q 045837 104 GIDLNGNDIAG-YFPAELGWLSDLALFHVNSNRFCGI----IPESLSNWKLIYEFDVSNNRLVG------SFPNVCLSWT 172 (527)
Q Consensus 104 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~ 172 (527)
.|+|.++.+.+ .....+..+.+|++|+++++.++.. +...+...++|++|+++++.+.+ .+...+..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35566666542 2233445566677777777777432 33445566667777777776651 1223455566
Q ss_pred cccEEecccCCCCCCcchhhhc-cc---cchhhcccccccccccc----ccC-C-CCcceEeccCCcCCcc----CCCCC
Q 045837 173 SLRYLDLRYNNFEGEVPRELFK-MK---LDAIFLNNNRFSSWIPE----TIG-E-STVSVVTFAHNNFSGC----VPRSI 238 (527)
Q Consensus 173 ~L~~L~Ls~n~i~~~~p~~~~~-~~---L~~L~L~~n~l~~~~~~----~~~-~-~~L~~L~L~~n~l~~~----~~~~l 238 (527)
+|++|+|++|.+.+.....+.. .+ |++|++++|++.+.... .+. . .+|++|++++|.+++. +...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 7777777777776434333332 23 77777777777632111 111 2 4677777777777732 22334
Q ss_pred CCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCccccc----CCcccCCCCCCcEEeccCCCCCCcchhhh
Q 045837 239 GNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGYVSEQI 310 (527)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l 310 (527)
..+.+|++|+|++|.+++. +...+..+.+|++|+|++|.+++. +...+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5556777777777777642 223344556777777777776532 22345566777778887777775322222
Q ss_pred hC-----CCCCcEEEecCcccCCC----CCCCCCCCCCCceecCCCCCCCCC
Q 045837 311 CK-----LPNINNFTFSYNYFQGL----GNECIPGSKEGGVFDDTSNCLAQR 353 (527)
Q Consensus 311 ~~-----l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~ 353 (527)
.. ...|++|++++|.+++. ....+..+.+|++|++++|.++..
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 21 35777777777777622 112344556777777877777744
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=1e-16 Score=184.92 Aligned_cols=242 Identities=13% Similarity=0.108 Sum_probs=166.6
Q ss_pred EEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEeccc
Q 045837 102 VAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRY 181 (527)
Q Consensus 102 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 181 (527)
|+.|++.++.+.. ++..| .+.+|++|+|.+|++. .++..+..+.+|++|+|+++.....++ .+..+.+|+.|+|++
T Consensus 591 Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 4444444443322 23333 3467777777777776 345556777788888887765443444 366677888888887
Q ss_pred CCCCCCcchhhhc-cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChh
Q 045837 182 NNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS 260 (527)
Q Consensus 182 n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 260 (527)
|.....++..+.. .+|+.|++++|.....++..+...+|++|+|++|.....++.. ..+|++|+|++|.+. .++.
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~ 742 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPS 742 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccc
Confidence 7655567766655 5788888887765555555555567888888887655554432 357888888888876 4443
Q ss_pred hc------------------------------cCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhh
Q 045837 261 EI------------------------------GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQI 310 (527)
Q Consensus 261 ~~------------------------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l 310 (527)
.+ ....+|+.|+|++|...+.+|..++++.+|+.|+|++|...+.++..+
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 21 112478889999998777899999999999999999986555666555
Q ss_pred hCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCC
Q 045837 311 CKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPS 355 (527)
Q Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 355 (527)
++.+|++|+|++|......+. ...+|+.|++++|.|..++.
T Consensus 823 -~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~ 863 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPW 863 (1153)
T ss_pred -CccccCEEECCCCCccccccc---cccccCEeECCCCCCccChH
Confidence 789999999999865443332 23689999999999997764
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=1.6e-19 Score=189.27 Aligned_cols=246 Identities=21% Similarity=0.279 Sum_probs=197.2
Q ss_pred CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCc-cc
Q 045837 97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTS-LR 175 (527)
Q Consensus 97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~ 175 (527)
..+.+|+.|++.+|.++. ++..+..+++|++|++..|.+. .++....+++.|++|+|..|+|.......|..+.. |+
T Consensus 261 ~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~ 338 (1081)
T KOG0618|consen 261 GACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLN 338 (1081)
T ss_pred HhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHH
Confidence 356799999999999954 6778888999999999999998 45556788999999999999998443333333333 78
Q ss_pred EEecccCCCCCCcchhhh--ccccchhhcccccccccccccc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837 176 YLDLRYNNFEGEVPRELF--KMKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN 252 (527)
Q Consensus 176 ~L~Ls~n~i~~~~p~~~~--~~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 252 (527)
.|+.+.|++. ..+..-. ...|+.|.+.+|.+++.....+ +..+|+.|+|++|++...-...+.++..|++|+||+|
T Consensus 339 ~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 339 TLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred HHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence 8888888887 4442211 1589999999999987654444 5678999999999999776677899999999999999
Q ss_pred CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCC
Q 045837 253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNE 332 (527)
Q Consensus 253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 332 (527)
+++ .++..+.++..|++|...+|++. .+| .+..+..|+.+||+.|+|+...-......++|++|||++|......-.
T Consensus 418 kL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~ 494 (1081)
T KOG0618|consen 418 KLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHK 494 (1081)
T ss_pred hhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchh
Confidence 999 89999999999999999999998 777 788899999999999999865444333447999999999986544445
Q ss_pred CCCCCCCCceecCCCC
Q 045837 333 CIPGSKEGGVFDDTSN 348 (527)
Q Consensus 333 ~~~~l~~L~~L~l~~N 348 (527)
.|..+..+...+++-|
T Consensus 495 ~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 495 TLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhHHhhhhhheecccC
Confidence 5666666666666555
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=9.7e-17 Score=173.16 Aligned_cols=222 Identities=19% Similarity=0.259 Sum_probs=156.8
Q ss_pred eEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccccccc-----------------CCCCCcEEEeecCcCccc
Q 045837 101 VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLS-----------------NWKLIYEFDVSNNRLVGS 163 (527)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-----------------~l~~L~~L~Ls~n~l~~~ 163 (527)
+|+.|+|.+|+++. ++. .+.+|++|+|++|+|+.+ +..+. ...+|+.|+|++|+++ .
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~ 296 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-S 296 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-c
Confidence 45666666666654 222 235566666666666532 21111 1134566666666666 2
Q ss_pred CCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCC
Q 045837 164 FPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPN 243 (527)
Q Consensus 164 ~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 243 (527)
++. .+.+|++|+|++|+|+ .++.. ..+|+.|++++|.+++. +.. ..+|++|+|++|+|.+ ++.. ..+
T Consensus 297 LP~---~p~~L~~LdLS~N~L~-~Lp~l--p~~L~~L~Ls~N~L~~L-P~l--p~~Lq~LdLS~N~Ls~-LP~l---p~~ 363 (788)
T PRK15387 297 LPV---LPPGLQELSVSDNQLA-SLPAL--PSELCKLWAYNNQLTSL-PTL--PSGLQELSVSDNQLAS-LPTL---PSE 363 (788)
T ss_pred ccc---cccccceeECCCCccc-cCCCC--cccccccccccCccccc-ccc--ccccceEecCCCccCC-CCCC---Ccc
Confidence 332 2368999999999998 45542 24688999999999863 321 2469999999999995 4433 347
Q ss_pred CcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecC
Q 045837 244 VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY 323 (527)
Q Consensus 244 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 323 (527)
|+.|++++|.|+ .++.. ..+|+.|+|++|+|++ ++.. ..+|+.|+|++|+|++ ++..+ .+|+.|++++
T Consensus 364 L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~ 431 (788)
T PRK15387 364 LYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYR 431 (788)
T ss_pred cceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhcc
Confidence 888999999998 46643 3579999999999984 5543 3589999999999986 44433 4688899999
Q ss_pred cccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837 324 NYFQGLGNECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 324 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
|+|+.+ +..+.++.+|+.|++++|.|++..
T Consensus 432 NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 432 NQLTRL-PESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred Cccccc-ChHHhhccCCCeEECCCCCCCchH
Confidence 999864 777889999999999999998653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=7e-19 Score=150.34 Aligned_cols=162 Identities=27% Similarity=0.507 Sum_probs=102.0
Q ss_pred CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837 98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL 177 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 177 (527)
++.+++.|.|++|.++. ++..+.++.+|+.|++.+|+|. .++..++.+++|+.|++.-|++. .++..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 45677777788887765 4456777777888888777777 55667777777777777777776 677777777777777
Q ss_pred ecccCCCCC-CcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837 178 DLRYNNFEG-EVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG 256 (527)
Q Consensus 178 ~Ls~n~i~~-~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 256 (527)
||.+|++.. .+|..+|. ...|+.|+|+.|.+. .++..++++++|+.|.+++|++-
T Consensus 108 dltynnl~e~~lpgnff~----------------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll- 163 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFY----------------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL- 163 (264)
T ss_pred hccccccccccCCcchhH----------------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-
Confidence 777777642 22322222 122333333333333 44555666666666666666665
Q ss_pred CChhhccCCCCCCEEEccCCcccccCCcccC
Q 045837 257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFS 287 (527)
Q Consensus 257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 287 (527)
.+|..++.+..|++|++.+|+++ .+|..++
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence 56666666666666666666665 4444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=7.1e-19 Score=150.30 Aligned_cols=182 Identities=21% Similarity=0.374 Sum_probs=149.4
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc-ccc
Q 045837 119 ELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKL 197 (527)
Q Consensus 119 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L 197 (527)
.+.++.+++.|.|++|+++. ++..+..+.+|+.|++++|+|. .++..+..+.+|+.|+++.|++. .+|..++. ..|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 45577889999999999994 5557899999999999999998 78889999999999999999997 77777766 566
Q ss_pred chhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCc
Q 045837 198 DAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNS 277 (527)
Q Consensus 198 ~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 277 (527)
+.|+|.+|.+.. ..++..|..+..|+-|+|++|++. .+|.+++++++|+.|.+.+|.
T Consensus 105 evldltynnl~e----------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 105 EVLDLTYNNLNE----------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhhcccccccc----------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 777776665543 246677888999999999999998 999999999999999999999
Q ss_pred ccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC---CcEEEecCcccCC
Q 045837 278 FYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN---INNFTFSYNYFQG 328 (527)
Q Consensus 278 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~---L~~L~Ls~N~l~~ 328 (527)
+. .+|..++.+..|++|++.+|+++ .++..++.+.- -+++.+.+|-+..
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 87 78999999999999999999998 44555554322 2344555665543
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.42 E-value=1.6e-14 Score=137.20 Aligned_cols=245 Identities=18% Similarity=0.184 Sum_probs=154.9
Q ss_pred CcceEEEEEcCCCCcCCC----CccccCCCCCCCEEEccCC---ccccccc-------ccccCCCCCcEEEeecCcCccc
Q 045837 98 NITVVAGIDLNGNDIAGY----FPAELGWLSDLALFHVNSN---RFCGIIP-------ESLSNWKLIYEFDVSNNRLVGS 163 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n---~i~~~~~-------~~~~~l~~L~~L~Ls~n~l~~~ 163 (527)
.+..++.|+|++|.|... +-..+.+.++|+..++++- +....++ .++-++.+|++||||+|-|...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 456788889998888543 3345667778888888763 2222222 2344456777777777776533
Q ss_pred CCc----ccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccC----C
Q 045837 164 FPN----VCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCV----P 235 (527)
Q Consensus 164 ~~~----~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~----~ 235 (527)
... .+.++..|++|+|.+|.+. ..........|..|. .++..+ ...+|+.++..+|++.... .
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~--~~kk~~------~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELA--VNKKAA------SKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHH--HHhccC------CCcceEEEEeeccccccccHHHHH
Confidence 322 2345667777777777765 322222222333333 221111 1245888888888877532 2
Q ss_pred CCCCCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCccccc----CCcccCCCCCCcEEeccCCCCCCcch
Q 045837 236 RSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGYVS 307 (527)
Q Consensus 236 ~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~ 307 (527)
..|.....|+++.+++|.|... +...+..+++|+.|||.+|.++.. +...+..+++|+.|++++|.+.....
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 2355567888888888887632 334567788888888888888632 23446667788888888888875433
Q ss_pred hhh-----hCCCCCcEEEecCcccCCC----CCCCCCCCCCCceecCCCCCCC
Q 045837 308 EQI-----CKLPNINNFTFSYNYFQGL----GNECIPGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 308 ~~l-----~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 351 (527)
..| ...++|++|.|.+|.++.. +..++...+.|..|+|++|.+.
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 322 2467888888888888742 2345566778888888888884
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.42 E-value=3.9e-14 Score=131.69 Aligned_cols=133 Identities=21% Similarity=0.234 Sum_probs=108.7
Q ss_pred CcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837 219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS 298 (527)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 298 (527)
.|.+|+|++|.|+ ++..++.-++.++.|++|+|.|. .+. .+..+.+|+.|||++|.++ .+..+-..+.++++|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4888999999888 55667777789999999999998 333 3778899999999999998 445566778899999999
Q ss_pred CCCCCCcchhhhhCCCCCcEEEecCcccCCCCC-CCCCCCCCCceecCCCCCCCCCCCCC
Q 045837 299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGLGN-ECIPGSKEGGVFDDTSNCLAQRPSQK 357 (527)
Q Consensus 299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~ 357 (527)
+|.|... ..+.++-+|..||+++|+|..... ..+++++.|+.+.|.+|.|..++.+.
T Consensus 361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR 418 (490)
T KOG1259|consen 361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR 418 (490)
T ss_pred hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence 9998753 457778889999999999986543 46888999999999999999877553
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.39 E-value=8.8e-13 Score=142.59 Aligned_cols=118 Identities=28% Similarity=0.469 Sum_probs=103.0
Q ss_pred CCCCCCCc----cccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCc
Q 045837 76 NWVGTDVC----SYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIY 151 (527)
Q Consensus 76 ~w~~~~~c----~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 151 (527)
+|.+..|| .|.|+.|.... ......++.|+|++|.+.+.++..+..+++|++|+|++|++.+.++..++++.+|+
T Consensus 391 ~W~g~~C~p~~~~w~Gv~C~~~~-~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~ 469 (623)
T PLN03150 391 GWNGDPCVPQQHPWSGADCQFDS-TKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE 469 (623)
T ss_pred CCCCCCCCCcccccccceeeccC-CCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 78764332 69999995321 11233699999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc
Q 045837 152 EFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK 194 (527)
Q Consensus 152 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~ 194 (527)
+|+|++|++++.++..+.++.+|++|+|++|.++|.+|..+..
T Consensus 470 ~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred EEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 9999999999999999999999999999999999999887654
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=4.4e-14 Score=141.72 Aligned_cols=175 Identities=25% Similarity=0.436 Sum_probs=133.6
Q ss_pred CCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhh
Q 045837 122 WLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIF 201 (527)
Q Consensus 122 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~ 201 (527)
.+..-...||+.|++. .++..+..+..|+.|.|++|.+. .++..+..+..|.+|||+.|+++ .++..++..-|+.|.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLI 149 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEE
Confidence 4555667888888887 56667777788888888888887 77778888888888888888888 888888888888888
Q ss_pred ccccccccccccccC-CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccc
Q 045837 202 LNNNRFSSWIPETIG-ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG 280 (527)
Q Consensus 202 L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 280 (527)
+++|+++.. +..++ ..+|.+|+.+.|.+. .++..++++.+|+.|.++.|++. .+|..+. .-.|..||++.|++.
T Consensus 150 ~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccccC-CcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-
Confidence 888887763 33333 345777888888777 45566777778888888888877 6666666 445778888888887
Q ss_pred cCCcccCCCCCCcEEeccCCCCCC
Q 045837 281 SVPQSFSSLESIHRLVLSYNQLTG 304 (527)
Q Consensus 281 ~~p~~~~~l~~L~~L~Ls~N~l~~ 304 (527)
.+|-.|.+|..|++|-|.+|-|..
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCCC
Confidence 677778888888888888888774
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=2.8e-14 Score=143.10 Aligned_cols=172 Identities=20% Similarity=0.268 Sum_probs=110.6
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
...+..||+.|++.. ++..+..+-.|+.|.|..|.|. .++..+.++..|.+|||+.|++. .++..++.| -|+.|-+
T Consensus 75 tdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIV 150 (722)
T ss_pred cchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEE
Confidence 344556666666654 4556666666667777777666 55666677777777777777776 455555443 4667777
Q ss_pred ccCCCCCCcchhhhc-cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCC
Q 045837 180 RYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCL 258 (527)
Q Consensus 180 s~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 258 (527)
++|+++ .++..+.. .+|..|+.+.|.+........+..+|+.|.+..|++. .++.+++.| .|..||+|.|++. .+
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YL 226 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ec
Confidence 777776 66665554 4667777777777665555555566777777777766 344555544 3666777777776 66
Q ss_pred hhhccCCCCCCEEEccCCccc
Q 045837 259 PSEIGWLKKLTVFDASSNSFY 279 (527)
Q Consensus 259 p~~~~~l~~L~~L~Ls~n~l~ 279 (527)
|..|..|+.|++|-|.+|-+.
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred chhhhhhhhheeeeeccCCCC
Confidence 767777777777777777665
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.31 E-value=2.4e-12 Score=132.79 Aligned_cols=175 Identities=26% Similarity=0.347 Sum_probs=75.4
Q ss_pred CCCcEEEeecCcCcccCCcccccCC-cccEEecccCCCCCCcchhhhc-cccchhhccccccccccccccCCCCcceEec
Q 045837 148 KLIYEFDVSNNRLVGSFPNVCLSWT-SLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTF 225 (527)
Q Consensus 148 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L 225 (527)
..++.|++.+|.++ .++.....+. +|+.|++++|.+. .++..+.. .+|+.|++++|++............|+.|++
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 34444444444444 2222222232 4444444444444 33222222 3444444444444432222112333445555
Q ss_pred cCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc
Q 045837 226 AHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY 305 (527)
Q Consensus 226 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 305 (527)
++|++. .++..+....+|++|++++|.+. .....+.++.++..|.+.+|++. .+...++.+.+|++|++++|+++.+
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc
Confidence 555544 22222233334555555555332 23334444555555555555544 2233444445555555555555533
Q ss_pred chhhhhCCCCCcEEEecCcccCCC
Q 045837 306 VSEQICKLPNINNFTFSYNYFQGL 329 (527)
Q Consensus 306 ~~~~l~~l~~L~~L~Ls~N~l~~~ 329 (527)
.. +..+.+|++|++++|.+...
T Consensus 271 ~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 271 SS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cc--ccccCccCEEeccCcccccc
Confidence 22 44555555555555554433
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.31 E-value=3.4e-12 Score=131.63 Aligned_cols=196 Identities=29% Similarity=0.418 Sum_probs=128.8
Q ss_pred EEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCC-CCcEEEeecCcCcccCCcccccCCcccEEecccC
Q 045837 104 GIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWK-LIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYN 182 (527)
Q Consensus 104 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 182 (527)
.+++..+.+...+ ..+..++.++.|++.+|.++.+ +.....+. +|++|++++|.+. .++..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666653322 2344556777777777777733 33444453 7777777777776 33345666777777777777
Q ss_pred CCCCCcchhh-hccccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChh
Q 045837 183 NFEGEVPREL-FKMKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS 260 (527)
Q Consensus 183 ~i~~~~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 260 (527)
++. .++... ....|+.|++++|++...- ..... ..|++|.+++|.+. .....+..+.++..|++.+|++. .+..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccCc-hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 777 555555 4467777777777776632 32222 33777788777544 23345677777888888888776 4455
Q ss_pred hccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchh
Q 045837 261 EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSE 308 (527)
Q Consensus 261 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 308 (527)
.++.+.+|++|++++|+++. +.. ++.+.+|+.|++++|.+....+.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchh
Confidence 67778888888888888873 333 77778888888888887765444
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.2e-12 Score=127.79 Aligned_cols=206 Identities=18% Similarity=0.204 Sum_probs=103.7
Q ss_pred cCCCCCcEEEeecCcCcccCC-cccccCCcccEEecccCCCCCCcchh--hhc--cccchhhcccccccccccccc--CC
Q 045837 145 SNWKLIYEFDVSNNRLVGSFP-NVCLSWTSLRYLDLRYNNFEGEVPRE--LFK--MKLDAIFLNNNRFSSWIPETI--GE 217 (527)
Q Consensus 145 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~p~~--~~~--~~L~~L~L~~n~l~~~~~~~~--~~ 217 (527)
+++.+|+++.|++..+..... .....|.+++.|||+.|-|. .+-.. +.. .+|+.|+|+.|++........ ..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 345556666666655542211 23445566666666666554 22111 111 456666666666544322222 12
Q ss_pred CCcceEeccCCcCCccC-CCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCC--cccCCCCCCcE
Q 045837 218 STVSVVTFAHNNFSGCV-PRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP--QSFSSLESIHR 294 (527)
Q Consensus 218 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~ 294 (527)
..|+.|.|+.|+++... ...+..+++|+.|+|.+|.....-......++.|++|||++|++.. ++ ...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 34666666666666421 1223445666667776664222223333445666667776666542 22 23445566666
Q ss_pred EeccCCCCCCcch-hh-----hhCCCCCcEEEecCcccCCCCC-CCCCCCCCCceecCCCCCCCC
Q 045837 295 LVLSYNQLTGYVS-EQ-----ICKLPNINNFTFSYNYFQGLGN-ECIPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 295 L~Ls~N~l~~~~~-~~-----l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~ 352 (527)
|+++.+.|.++.- +. ...+.+|++|+++.|++.+... ..+..+.+|+.|.+..|.|+.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 6666666654311 11 2345566667777766654321 223344555666666666653
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=9.2e-13 Score=128.60 Aligned_cols=208 Identities=17% Similarity=0.206 Sum_probs=105.9
Q ss_pred CCCcceEEEEEcCCCCcCCCCc-cccCCCCCCCEEEccCCcccc--cccccccCCCCCcEEEeecCcCcccCCcc-cccC
Q 045837 96 NSNITVVAGIDLNGNDIAGYFP-AELGWLSDLALFHVNSNRFCG--IIPESLSNWKLIYEFDVSNNRLVGSFPNV-CLSW 171 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l 171 (527)
.+++++|+.+.|+++.+....- +....|.+++.|||+.|-|.. .+......|++|+.|+|+.|++....... -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3456677777777766543221 244566777777777775542 12233456677777777777665222111 1134
Q ss_pred CcccEEecccCCCCCCcchhhhc--cccchhhcccccccccccccc-CCCCcceEeccCCcCCccC-CCCCCCCCCCcEE
Q 045837 172 TSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAHNNFSGCV-PRSIGNMPNVNEI 247 (527)
Q Consensus 172 ~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L 247 (527)
..|+.|.|+.|.++..--..+.. .+|+.|+|.+|.......... -...|++|+|++|.+.+.. ....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 66777777777665222122222 567777776664211111111 1234666666666665432 1234556666666
Q ss_pred EcccCCCCCCChhh------ccCCCCCCEEEccCCccccc-CCcccCCCCCCcEEeccCCCCC
Q 045837 248 ILSNNDLMGCLPSE------IGWLKKLTVFDASSNSFYGS-VPQSFSSLESIHRLVLSYNQLT 303 (527)
Q Consensus 248 ~Ls~N~l~~~~p~~------~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~ 303 (527)
+++.|.+.+.--.. ...+.+|++|++..|++... .-..+..+.+|+.|.+..|.|.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 66666665321111 23345566666666665310 0012333445555555555554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=4.1e-12 Score=118.33 Aligned_cols=113 Identities=22% Similarity=0.154 Sum_probs=94.4
Q ss_pred CCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837 236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN 315 (527)
Q Consensus 236 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 315 (527)
..+..+..|++||||+|.|+ .+-+++.-+..++.|++++|.|..+ ..+..+.+|+.|||++|.++. +..+-.++-+
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGN 353 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGN 353 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcC
Confidence 34455678999999999998 7777888889999999999999843 348889999999999999984 4456667889
Q ss_pred CcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837 316 INNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
+++|.|+.|.+..+ ..+..+-+|..||+++|+|..+.
T Consensus 354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHH
Confidence 99999999999765 34667788999999999998654
No 33
>PLN03150 hypothetical protein; Provisional
Probab=99.18 E-value=5e-11 Score=129.06 Aligned_cols=106 Identities=28% Similarity=0.472 Sum_probs=73.5
Q ss_pred CcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecC
Q 045837 244 VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY 323 (527)
Q Consensus 244 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 323 (527)
++.|+|++|.+.|.++..++.+++|+.|+|++|++.|.++..+..+.+|+.|+|++|+++|.+++.++++.+|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677777777777777777777777777777777777776677777777777777777777777777777777777777
Q ss_pred cccCCCCCCCCCCC-CCCceecCCCCC
Q 045837 324 NYFQGLGNECIPGS-KEGGVFDDTSNC 349 (527)
Q Consensus 324 N~l~~~~~~~~~~l-~~L~~L~l~~N~ 349 (527)
|++++.++..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 77777666655443 345566666664
No 34
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.15 E-value=3e-12 Score=132.47 Aligned_cols=241 Identities=18% Similarity=0.155 Sum_probs=113.8
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
..+..+.++.|.+.. +-..+..+++|++|++.+|+|..+.. .+..+.+|++|+|++|.|+.+ ..+..+..|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 444445555555543 22235555666666666666653321 144555666666666666533 23344455666666
Q ss_pred ccCCCCCCcchhhhccccchhhcccccccccccc-ccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCC
Q 045837 180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPE-TIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCL 258 (527)
Q Consensus 180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 258 (527)
++|.|. .+...-....|+.+++++|++...-.. .....+++.+.+.+|.+... ..+..+..+..+++..|.+...-
T Consensus 148 ~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 148 SGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred ccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc
Confidence 666655 333322234555555666555543221 12233455555555555422 12333334444455555554111
Q ss_pred hhhccCCC--CCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCC---CC-
Q 045837 259 PSEIGWLK--KLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLG---NE- 332 (527)
Q Consensus 259 p~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~---~~- 332 (527)
. +..+. +|+.+++++|.+.. ++..+..+..+..|++.+|++... ..+.....+..+.+.+|.+.... ..
T Consensus 225 ~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (414)
T KOG0531|consen 225 G--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEY 299 (414)
T ss_pred C--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccc
Confidence 1 11112 25666666666552 213444455566666666665543 22333444445555555544211 11
Q ss_pred CCCCCCCCceecCCCCCCCC
Q 045837 333 CIPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 333 ~~~~l~~L~~L~l~~N~l~~ 352 (527)
.......+..+.+.+|.+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 300 ITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cccccccccccccccCcccc
Confidence 12334455555555555543
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=6.3e-12 Score=119.73 Aligned_cols=225 Identities=19% Similarity=0.231 Sum_probs=158.3
Q ss_pred cccCCCCCCCEEEccCCccccc----ccccccCCCCCcEEEeecCcC---cccCC-------cccccCCcccEEecccCC
Q 045837 118 AELGWLSDLALFHVNSNRFCGI----IPESLSNWKLIYEFDVSNNRL---VGSFP-------NVCLSWTSLRYLDLRYNN 183 (527)
Q Consensus 118 ~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l---~~~~~-------~~~~~l~~L~~L~Ls~n~ 183 (527)
..+..+..+++|+|++|.|... +...+.+.++|++.++++-.. ...++ ..+.++.+|++||||+|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 4566788999999999998743 445667778899998886421 11222 234456799999999999
Q ss_pred CCCCcchhhhc-----cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC-
Q 045837 184 FEGEVPRELFK-----MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC- 257 (527)
Q Consensus 184 i~~~~p~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~- 257 (527)
|.-.....+.. ..|++|.|.+|.+.-.....++. .|.+|. .+ .....-.+|+++....|++...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~-al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR-ALFELA--VN-------KKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH-HHHHHH--HH-------hccCCCcceEEEEeecccccccc
Confidence 97555544432 57888888888775432222111 123332 11 1233446899999999998743
Q ss_pred ---ChhhccCCCCCCEEEccCCccccc----CCcccCCCCCCcEEeccCCCCCCc----chhhhhCCCCCcEEEecCccc
Q 045837 258 ---LPSEIGWLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGY----VSEQICKLPNINNFTFSYNYF 326 (527)
Q Consensus 258 ---~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l 326 (527)
+...|.....|+.+.+..|.|... +-..|..+++|+.|||.+|-++.. +...+..+++|++|+++++.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 344577788999999999988522 234578899999999999999753 455677889999999999998
Q ss_pred CCCCCCC-----CCCCCCCceecCCCCCCCC
Q 045837 327 QGLGNEC-----IPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 327 ~~~~~~~-----~~~l~~L~~L~l~~N~l~~ 352 (527)
....... -...++|++|++.+|.|+.
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 8643322 2346799999999999984
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=7.7e-11 Score=105.33 Aligned_cols=81 Identities=21% Similarity=0.298 Sum_probs=20.6
Q ss_pred cceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhc-cCCCCCCEEEccCCcccccC-CcccCCCCCCcEEec
Q 045837 220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSV-PQSFSSLESIHRLVL 297 (527)
Q Consensus 220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L 297 (527)
|+.|+|++|.|... +.+..+.+|++|++++|.|+. +...+ ..+.+|++|+|++|+|.... -..+..+++|+.|+|
T Consensus 44 L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 44 LEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp --EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred CCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeec
Confidence 44444444444432 234444555555555555542 22122 23445555555555544211 022334445555555
Q ss_pred cCCCCC
Q 045837 298 SYNQLT 303 (527)
Q Consensus 298 s~N~l~ 303 (527)
.+|.++
T Consensus 121 ~~NPv~ 126 (175)
T PF14580_consen 121 EGNPVC 126 (175)
T ss_dssp TT-GGG
T ss_pred cCCccc
Confidence 555443
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.09 E-value=6.8e-12 Score=129.87 Aligned_cols=239 Identities=20% Similarity=0.185 Sum_probs=149.9
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
..++.++..++.+...--. ...+..++.+++..|.|.. +-..+..+.+|.+|++.+|.|... ...+..+.+|++|+|
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~l 125 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDL 125 (414)
T ss_pred chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheec
Confidence 3445555555544332111 1456778888888888874 333578889999999999999844 233677899999999
Q ss_pred ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCC-CCCCCCCCCcEEEcccCCCCCCC
Q 045837 180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVP-RSIGNMPNVNEIILSNNDLMGCL 258 (527)
Q Consensus 180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~ 258 (527)
++|.|+ .+...-....|+.|++.+|.|...-. .-....|+.+++++|++...-. . +..+.+|+.+++.+|.+...
T Consensus 126 s~N~I~-~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i- 201 (414)
T KOG0531|consen 126 SFNKIT-KLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI- 201 (414)
T ss_pred cccccc-cccchhhccchhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-
Confidence 999998 44444344568888888888876321 1124457777777777775433 1 45667777777877777622
Q ss_pred hhhccCCCCCCEEEccCCcccccCCcccCCCCC--CcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCC
Q 045837 259 PSEIGWLKKLTVFDASSNSFYGSVPQSFSSLES--IHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG 336 (527)
Q Consensus 259 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (527)
..+..+..+..+++..|.++..- .+..+.. |+.+++++|.+.... ..+..+..+..|++.+|++... ..+..
T Consensus 202 -~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~ 275 (414)
T KOG0531|consen 202 -EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLER 275 (414)
T ss_pred -cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccc
Confidence 12334455555577777776322 2222222 777888888776431 4455666777777777777654 22344
Q ss_pred CCCCceecCCCCCCC
Q 045837 337 SKEGGVFDDTSNCLA 351 (527)
Q Consensus 337 l~~L~~L~l~~N~l~ 351 (527)
...+..+...+|.+.
T Consensus 276 ~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 276 LPKLSELWLNDNKLA 290 (414)
T ss_pred cchHHHhccCcchhc
Confidence 455555666666655
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=9.9e-11 Score=104.64 Aligned_cols=123 Identities=21% Similarity=0.290 Sum_probs=42.1
Q ss_pred CCcceEeccCCcCCccCCCCCC-CCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCccc-CCCCCCcEE
Q 045837 218 STVSVVTFAHNNFSGCVPRSIG-NMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSF-SSLESIHRL 295 (527)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L 295 (527)
.++++|+|.+|.|... +.++ .+.+|++|+|++|.|+. +. .+..+.+|++|++++|.|+. +.+.+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 4577788888877743 3454 46677888888887773 32 46667778888888887773 33333 346777888
Q ss_pred eccCCCCCCcc-hhhhhCCCCCcEEEecCcccCCCCC---CCCCCCCCCceecC
Q 045837 296 VLSYNQLTGYV-SEQICKLPNINNFTFSYNYFQGLGN---ECIPGSKEGGVFDD 345 (527)
Q Consensus 296 ~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l 345 (527)
+|++|+|.... -..+..+++|++|+|.+|.++.... ..+..+++|+.||-
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 88888776532 2456677777788888777764311 11345566666654
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.03 E-value=3.6e-12 Score=131.27 Aligned_cols=131 Identities=24% Similarity=0.244 Sum_probs=84.5
Q ss_pred CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEec
Q 045837 218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL 297 (527)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 297 (527)
.+|...++++|.+. .+...+.-+..|+.|+|++|+++.. . .+..+.+|++|||++|.++ .++..-..-.+|+.|+|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 34666777777766 3444566667778888888877733 2 5677777888888888776 34322111234777888
Q ss_pred cCCCCCCcchhhhhCCCCCcEEEecCcccCCCCC-CCCCCCCCCceecCCCCCCCCCC
Q 045837 298 SYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGN-ECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 298 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
+||.++.. ..+.++.+|+.||+++|-|.+..- ..+..+..|+.|+|.||.+...+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 88877643 446677777788888887765321 12344556777788888777554
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.86 E-value=2.1e-10 Score=105.73 Aligned_cols=245 Identities=17% Similarity=0.144 Sum_probs=146.7
Q ss_pred cceEEEEEcCCCCcCCCC----ccccCCCCCCCEEEccCCcc---ccc-------ccccccCCCCCcEEEeecCcCcccC
Q 045837 99 ITVVAGIDLNGNDIAGYF----PAELGWLSDLALFHVNSNRF---CGI-------IPESLSNWKLIYEFDVSNNRLVGSF 164 (527)
Q Consensus 99 ~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~i---~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~ 164 (527)
+..++.++|++|.|...- ...+.+-++|+..++++-.. ... +-.++.+|+.|+..+||.|.|....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 567888888888886543 33455667788777776311 111 1224566778888888888776544
Q ss_pred Cc----ccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCC----
Q 045837 165 PN----VCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPR---- 236 (527)
Q Consensus 165 ~~----~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---- 236 (527)
+. .+.+-..|++|.|++|.+. .+...-....|.+ |.+|+-. -....|+.+++..|++..-.-.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~--la~nKKa------a~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFH--LAYNKKA------ADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHH--HHHHhhh------ccCCCceEEEeccchhccCcHHHHHH
Confidence 43 3445567888888887765 3322211112221 1222110 1224577777777777632111
Q ss_pred CCCCCCCCcEEEcccCCCCCCC-----hhhccCCCCCCEEEccCCcccccC----CcccCCCCCCcEEeccCCCCCCcch
Q 045837 237 SIGNMPNVNEIILSNNDLMGCL-----PSEIGWLKKLTVFDASSNSFYGSV----PQSFSSLESIHRLVLSYNQLTGYVS 307 (527)
Q Consensus 237 ~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~~ 307 (527)
.|..-.+|+++.+.+|.|.-.- -..+..+++|+.|||++|.++... ...++.+..|+.|.+..|-++....
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence 1222257888888888886331 123445788999999999887322 2345566778899999888875433
Q ss_pred hhh------hCCCCCcEEEecCcccCCCCCCC-------CCCCCCCceecCCCCCCCC
Q 045837 308 EQI------CKLPNINNFTFSYNYFQGLGNEC-------IPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 308 ~~l------~~l~~L~~L~Ls~N~l~~~~~~~-------~~~l~~L~~L~l~~N~l~~ 352 (527)
..+ ...++|+.|.+.||.+.+.+-.. -..++-|..|.+++|.|..
T Consensus 260 ~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 260 KSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 322 13577888889999776532211 1245667788889998874
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=3.5e-09 Score=77.82 Aligned_cols=60 Identities=35% Similarity=0.543 Sum_probs=38.4
Q ss_pred CCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCC
Q 045837 125 DLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNF 184 (527)
Q Consensus 125 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 184 (527)
+|++|+|++|+|..+..+.|.++++|++|+|++|.++...++.|.++.+|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655555666666666666666666655555666666666666666653
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3.6e-09 Score=77.74 Aligned_cols=58 Identities=34% Similarity=0.479 Sum_probs=27.9
Q ss_pred CCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcc
Q 045837 268 LTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNY 325 (527)
Q Consensus 268 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~ 325 (527)
|++|+|++|+++......|.++.+|++|+|++|.|+.+.++.|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444444444443333444444555555555555544444444555555555555544
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=3.7e-09 Score=117.24 Aligned_cols=246 Identities=13% Similarity=0.107 Sum_probs=116.4
Q ss_pred cceEEEEEcCCCC--cCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837 99 ITVVAGIDLNGND--IAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY 176 (527)
Q Consensus 99 ~~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 176 (527)
+..|++|-+.+|. +..+..+.|..++.|++|||++|.-.+.+|..+++|-+|++|+|++..+. .+|..+.+|.+|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3356566665554 33333334556666666666665555566666666666666666666666 55666666666666
Q ss_pred EecccCCCCCCcchhhh-ccccchhhccccccccc--cccc-cCCCCcceEecc--------------------------
Q 045837 177 LDLRYNNFEGEVPRELF-KMKLDAIFLNNNRFSSW--IPET-IGESTVSVVTFA-------------------------- 226 (527)
Q Consensus 177 L~Ls~n~i~~~~p~~~~-~~~L~~L~L~~n~l~~~--~~~~-~~~~~L~~L~L~-------------------------- 226 (527)
|++..+.....++.... ..+|++|.+........ .-.. ....+|+.|...
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhc
Confidence 66666554433333333 24555555544431110 0000 001112222221
Q ss_pred CCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccC------CCCCCEEEccCCcccccCCcccCCCCCCcEEeccCC
Q 045837 227 HNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGW------LKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN 300 (527)
Q Consensus 227 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 300 (527)
++... .....+..+.+|+.|.+.++.+....-..... +.+|..+.+.++..- ....+.....+|+.|++.++
T Consensus 703 ~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 703 GCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSC 780 (889)
T ss_pred ccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecc
Confidence 11111 22233455566666666666554221111110 111111112222111 11122223467888888777
Q ss_pred CCCCcchhhhhCCCCCcEEEecCcccCCC-CCCCCCCCCCCceecCCC
Q 045837 301 QLTGYVSEQICKLPNINNFTFSYNYFQGL-GNECIPGSKEGGVFDDTS 347 (527)
Q Consensus 301 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~ 347 (527)
.....+......+..++++.+..+.+.+. .-....+++++..+.+.+
T Consensus 781 ~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 781 RLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred cccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence 66555555555555666666666666665 233344445444444443
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.79 E-value=8.7e-11 Score=121.29 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=62.5
Q ss_pred ccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChh-hccCCCCCCEEEcc
Q 045837 196 KLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS-EIGWLKKLTVFDAS 274 (527)
Q Consensus 196 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls 274 (527)
+|...++++|+++......--...++.|+|++|++.... .+..+.+|++|||++|.+. .++. ...+++ |+.|+|+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence 445555555555432221112233555566666555432 4555566666666666665 3332 122233 6666666
Q ss_pred CCcccccCCcccCCCCCCcEEeccCCCCCCcc-hhhhhCCCCCcEEEecCcccC
Q 045837 275 SNSFYGSVPQSFSSLESIHRLVLSYNQLTGYV-SEQICKLPNINNFTFSYNYFQ 327 (527)
Q Consensus 275 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~ 327 (527)
+|.++.. ..+.++.+|+.|||++|.|.+.- ...+..+..|++|+|.+|-+.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6665522 23455566666666666655431 122334445556666666543
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.71 E-value=9.5e-10 Score=101.47 Aligned_cols=213 Identities=14% Similarity=0.068 Sum_probs=124.5
Q ss_pred CcceEEEEEcCCCCcCC---CCc-------cccCCCCCCCEEEccCCccccccc----ccccCCCCCcEEEeecCcCccc
Q 045837 98 NITVVAGIDLNGNDIAG---YFP-------AELGWLSDLALFHVNSNRFCGIIP----ESLSNWKLIYEFDVSNNRLVGS 163 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~---~~~-------~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~ 163 (527)
+-++|+..++++-.... .+. ..+-+|.+|+.++|++|.|....+ +.++.-..|++|.|++|.+.-.
T Consensus 56 ~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 56 NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 45677888777643321 111 245678999999999999875544 3456778999999999987522
Q ss_pred CCcccc-------------cCCcccEEecccCCCCCCcchhhhccccchhhcccccccccccccc-CCCCcceEeccCCc
Q 045837 164 FPNVCL-------------SWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAHNN 229 (527)
Q Consensus 164 ~~~~~~-------------~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~ 229 (527)
-...++ +-+.|+.+....|++. ..+...... .+ ....|+++.+..|.
T Consensus 136 aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~------------------~l~sh~~lk~vki~qNg 196 (388)
T COG5238 136 AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAA------------------LLESHENLKEVKIQQNG 196 (388)
T ss_pred chhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHH------------------HHHhhcCceeEEeeecC
Confidence 222222 2244555555555554 222221110 00 11235555555555
Q ss_pred CCcc-----CCCCCCCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCcccccCCccc------CCCCCCcE
Q 045837 230 FSGC-----VPRSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGSVPQSF------SSLESIHR 294 (527)
Q Consensus 230 l~~~-----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~------~~l~~L~~ 294 (527)
|.-. +...+..+.+|+.|||.+|.++-. +...+..+..|+.|.+.+|-++......+ ....+|..
T Consensus 197 Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~ 276 (388)
T COG5238 197 IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMP 276 (388)
T ss_pred cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccc
Confidence 5422 112345567888888888877622 33445566678888888887764332221 12467788
Q ss_pred EeccCCCCCCcchhh-------hhCCCCCcEEEecCcccCCC
Q 045837 295 LVLSYNQLTGYVSEQ-------ICKLPNINNFTFSYNYFQGL 329 (527)
Q Consensus 295 L~Ls~N~l~~~~~~~-------l~~l~~L~~L~Ls~N~l~~~ 329 (527)
|.+.+|.+.+.+-.. -..++-|..|.+++|+|...
T Consensus 277 L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 277 LPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred cccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 888888765432111 12455566677788887653
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=7e-09 Score=115.09 Aligned_cols=153 Identities=19% Similarity=0.216 Sum_probs=113.7
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCc--ccccccccccCCCCCcEEEeecCcCcccCCcccccCCc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR--FCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTS 173 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 173 (527)
......++++.+.+|.+.... ... +..+|+.|-+.+|. +..+..+.|..++.|++|||++|.--+.+|..+++|-+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~-~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIA-GSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchhhcc-CCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 345567888888888876532 222 34479999999996 56555566889999999999998877799999999999
Q ss_pred ccEEecccCCCCCCcchhhhc-cccchhhccccccccccccccC-CCCcceEeccCCcCC--ccCCCCCCCCCCCcEEEc
Q 045837 174 LRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFS--GCVPRSIGNMPNVNEIIL 249 (527)
Q Consensus 174 L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L 249 (527)
||+|+|++..+. .+|..+.. .+|.+|++.++.....++.... ..+|++|.+...... ...-..+.++.+|+.|..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999999998 89998888 6899999999876555544444 677999988765422 222233455555555555
Q ss_pred cc
Q 045837 250 SN 251 (527)
Q Consensus 250 s~ 251 (527)
..
T Consensus 676 ~~ 677 (889)
T KOG4658|consen 676 TI 677 (889)
T ss_pred ec
Confidence 33
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.6e-08 Score=94.71 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCcCCCCc-ccc-CCCCCCCEEEccCCcccc--cccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837 101 VVAGIDLNGNDIAGYFP-AEL-GWLSDLALFHVNSNRFCG--IIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY 176 (527)
Q Consensus 101 ~L~~L~L~~n~l~~~~~-~~l-~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 176 (527)
.++.|.+.++.|...-. ..| ...+.+++|||.+|.|+. .+...+.+++.|++|+|+.|.+...+-..-..+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 45566666666643211 122 245788889999988873 33444677888899999998887433222135678888
Q ss_pred EecccCCCCCCcchhhhc--cccchhhcccccc
Q 045837 177 LDLRYNNFEGEVPRELFK--MKLDAIFLNNNRF 207 (527)
Q Consensus 177 L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l 207 (527)
|-|.+..+.-.-...+.. .++++|+++.|.+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 888877765222222222 4667777777643
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.9e-09 Score=100.71 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=31.2
Q ss_pred CCCEEEccCCccccc-ccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccC
Q 045837 125 DLALFHVNSNRFCGI-IPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYN 182 (527)
Q Consensus 125 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 182 (527)
.|++|||++..|+.. +-..++.+.+|+.|.|.++++.+.+...+.+..+|+.|+|+.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 355666666555421 1122345556666666666665555555555556666666554
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4.7e-09 Score=98.19 Aligned_cols=196 Identities=16% Similarity=0.083 Sum_probs=133.3
Q ss_pred ceEEEEEcCCCCcCCC-CccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCc-Cccc-CCcccccCCcccE
Q 045837 100 TVVAGIDLNGNDIAGY-FPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR-LVGS-FPNVCLSWTSLRY 176 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~ 176 (527)
.+|+.|||++..|+.. +-..+..+.+|+.|.|+++++...+...+..-.+|+.|+|+.+. ++.. ..-.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4689999999888642 23356788999999999999999888899999999999999764 3311 1123567899999
Q ss_pred EecccCCCCCCcchhhhc---cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCC
Q 045837 177 LDLRYNNFEGEVPRELFK---MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNND 253 (527)
Q Consensus 177 L~Ls~n~i~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 253 (527)
|+|+.+.+....-..+.. .+|+.|+|++++-.- + .+++. .....+.+|.+|||++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl------~----------~sh~~----tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL------Q----------KSHLS----TLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh------h----------hhHHH----HHHHhCCceeeecccccc
Confidence 999999876433111111 466777776654211 0 01111 113467889999999875
Q ss_pred -CCCCChhhccCCCCCCEEEccCCcccccCCc---ccCCCCCCcEEeccCCCCCCcchhhhhCCCCCc
Q 045837 254 -LMGCLPSEIGWLKKLTVFDASSNSFYGSVPQ---SFSSLESIHRLVLSYNQLTGYVSEQICKLPNIN 317 (527)
Q Consensus 254 -l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 317 (527)
++......|.++..|++|.|+.|.. ++|+ .+...++|.+||+.++--.+...-....+++|+
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 5544555677889999999999864 3443 356678999999888755443333334555555
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=6.9e-08 Score=80.43 Aligned_cols=84 Identities=19% Similarity=0.323 Sum_probs=36.6
Q ss_pred CCcEEEcccCCCCCCChhhcc-CCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEe
Q 045837 243 NVNEIILSNNDLMGCLPSEIG-WLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTF 321 (527)
Q Consensus 243 ~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 321 (527)
.|+.++|++|.+. ..+..|. ....++.|+|++|.|+ .+|..+..++.|+.|+++.|.|... +..+..+.+|..|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcC
Confidence 3444444444444 2222222 2234444555555544 3444444455555555555544422 223333444444554
Q ss_pred cCcccCCC
Q 045837 322 SYNYFQGL 329 (527)
Q Consensus 322 s~N~l~~~ 329 (527)
.+|.+..+
T Consensus 131 ~~na~~ei 138 (177)
T KOG4579|consen 131 PENARAEI 138 (177)
T ss_pred CCCccccC
Confidence 44544433
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=3.4e-07 Score=76.36 Aligned_cols=111 Identities=20% Similarity=0.172 Sum_probs=84.4
Q ss_pred CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837 97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY 176 (527)
Q Consensus 97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 176 (527)
....+|+.++|++|.|....+.....++.++.|+|++|.|+ .+|..+..++.|+.|++++|.+. ..+..+..|.+|.+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 34567899999999997744434456678899999999998 56667999999999999999998 66777777899999
Q ss_pred EecccCCCCCCcchhhhcc-ccchhhccccccccc
Q 045837 177 LDLRYNNFEGEVPRELFKM-KLDAIFLNNNRFSSW 210 (527)
Q Consensus 177 L~Ls~n~i~~~~p~~~~~~-~L~~L~L~~n~l~~~ 210 (527)
|+..+|.+. .++..++.. ..-.+.+.++.+.+.
T Consensus 128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred hcCCCCccc-cCcHHHhccccHHHHHhcCCccccc
Confidence 999999887 676665553 444455666666553
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=2.9e-07 Score=86.38 Aligned_cols=230 Identities=13% Similarity=0.090 Sum_probs=136.0
Q ss_pred CCCCCCEEEccCCccccccc-ccc-cCCCCCcEEEeecCcCcc--cCCcccccCCcccEEecccCCCCCCcchh-hhccc
Q 045837 122 WLSDLALFHVNSNRFCGIIP-ESL-SNWKLIYEFDVSNNRLVG--SFPNVCLSWTSLRYLDLRYNNFEGEVPRE-LFKMK 196 (527)
Q Consensus 122 ~l~~L~~L~Ls~n~i~~~~~-~~~-~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~-~~~~~ 196 (527)
..+.++.|.+.++.|...-. +.| ..+..+++|||.+|.|+. .+...+.+|+.|+.|+|+.|.+...|-.. +-..+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 34455667777776653211 122 335678999999998862 33345667889999999999887544333 22258
Q ss_pred cchhhccccccccccccccC--CCCcceEeccCCcCCccCC--CCCCCC-CCCcEEEcccCCCCC--CChhhccCCCCCC
Q 045837 197 LDAIFLNNNRFSSWIPETIG--ESTVSVVTFAHNNFSGCVP--RSIGNM-PNVNEIILSNNDLMG--CLPSEIGWLKKLT 269 (527)
Q Consensus 197 L~~L~L~~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~--~~l~~l-~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~ 269 (527)
|+.|.|.+..+.+.....+. ...+++|.++.|++..... +....+ +.+++|.+-.|...- ..-.....+.++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 88888888877664443332 2346677777664432111 111112 134444443332210 0000112345677
Q ss_pred EEEccCCcccccC-CcccCCCCCCcEEeccCCCCCCcc-hhhhhCCCCCcEEEecCcccCCCCCC------CCCCCCCCc
Q 045837 270 VFDASSNSFYGSV-PQSFSSLESIHRLVLSYNQLTGYV-SEQICKLPNINNFTFSYNYFQGLGNE------CIPGSKEGG 341 (527)
Q Consensus 270 ~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~------~~~~l~~L~ 341 (527)
.+.+..|.+...- -+.+..++.+..|+|+.|+|.+.. -+.+.+++.|..|.+++|-+.+.... .++.+.+++
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~ 282 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQ 282 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceE
Confidence 7777777664221 234555667778999999998653 25678889999999999987654332 255677777
Q ss_pred eecCCCCCCCCC
Q 045837 342 VFDDTSNCLAQR 353 (527)
Q Consensus 342 ~L~l~~N~l~~~ 353 (527)
.|+-+ .|++.
T Consensus 283 vLNGs--kIss~ 292 (418)
T KOG2982|consen 283 VLNGS--KISSR 292 (418)
T ss_pred EecCc--ccchh
Confidence 77554 66643
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.04 E-value=6.4e-06 Score=73.44 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=42.5
Q ss_pred ceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccC-CcccCCCCCCcEEeccC
Q 045837 221 SVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSV-PQSFSSLESIHRLVLSY 299 (527)
Q Consensus 221 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~ 299 (527)
..++|++|.+... +.|..+..|.+|.|.+|+|+.+-+.--..+.+|+.|.|.+|+|.... -.-+..+++|++|.+-+
T Consensus 45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 3344444444321 23444455555555555555333332223344555555555543110 01233444555555555
Q ss_pred CCCCCc---chhhhhCCCCCcEEEec
Q 045837 300 NQLTGY---VSEQICKLPNINNFTFS 322 (527)
Q Consensus 300 N~l~~~---~~~~l~~l~~L~~L~Ls 322 (527)
|.++.. -...+..+++|++||++
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehh
Confidence 544321 11233444455555443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=5.7e-06 Score=89.92 Aligned_cols=110 Identities=13% Similarity=0.134 Sum_probs=67.4
Q ss_pred CCCCCcEEEcccCCCCCC-ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC-cchhhhhCCCCCc
Q 045837 240 NMPNVNEIILSNNDLMGC-LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG-YVSEQICKLPNIN 317 (527)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~ 317 (527)
.++.|+.|.+++-.+... .-....++.+|..||+|+.+++.. ..+..+++|+.|.+.+=.+.. ..-..+.+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 356777777777555322 223345667777777777777633 456667777777776665553 2234566777777
Q ss_pred EEEecCcccCCCC------CCCCCCCCCCceecCCCCCCC
Q 045837 318 NFTFSYNYFQGLG------NECIPGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 318 ~L~Ls~N~l~~~~------~~~~~~l~~L~~L~l~~N~l~ 351 (527)
+||+|........ -+|...+++|+.||.+++.+.
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 7777766544321 134455777778877777666
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.8e-05 Score=53.42 Aligned_cols=12 Identities=42% Similarity=0.617 Sum_probs=3.7
Q ss_pred CcEEEcccCCCC
Q 045837 244 VNEIILSNNDLM 255 (527)
Q Consensus 244 L~~L~Ls~N~l~ 255 (527)
|++|++++|+|+
T Consensus 3 L~~L~l~~N~i~ 14 (44)
T PF12799_consen 3 LEELDLSNNQIT 14 (44)
T ss_dssp -SEEEETSSS-S
T ss_pred ceEEEccCCCCc
Confidence 333333333333
No 56
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.81 E-value=0.002 Score=64.68 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=12.3
Q ss_pred ceeeCCCCCCCCcceEEEEEcCCCC
Q 045837 87 GVFCAPAPDNSNITVVAGIDLNGND 111 (527)
Q Consensus 87 gv~c~~~~~~~~~~~L~~L~L~~n~ 111 (527)
|+.|.....-.+..-|+..||.+++
T Consensus 64 Gal~lVkD~~~rsyFlrl~di~~~r 88 (569)
T KOG3671|consen 64 GALCLVKDNAQRSYFLRLVDIVNNR 88 (569)
T ss_pred eeEEEeeccccceeeeEEeeecCce
Confidence 4556433333344455555555554
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=3.3e-05 Score=68.97 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=91.1
Q ss_pred CcceEeccCCcCCccCCCCCCC-CCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEec
Q 045837 219 TVSVVTFAHNNFSGCVPRSIGN-MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL 297 (527)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 297 (527)
.-++++|.+.++.... .++. +.+...+||++|++. .+. .|..+..|.+|.|++|.|+.+-+..-..+.+|+.|.|
T Consensus 20 ~e~e~~LR~lkip~ie--nlg~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIE--NLGATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccccchh--hccccccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 3456666666655221 1222 257888999999987 332 5778899999999999999666655555678999999
Q ss_pred cCCCCCCcc-hhhhhCCCCCcEEEecCcccCCCCC---CCCCCCCCCceecCCCCCC
Q 045837 298 SYNQLTGYV-SEQICKLPNINNFTFSYNYFQGLGN---ECIPGSKEGGVFDDTSNCL 350 (527)
Q Consensus 298 s~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~l 350 (527)
.+|.|.... -+-+..+++|++|.+-+|.++.... -.+..+++|++||.+.-..
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 999887432 1346678899999999998876432 2356778999998875443
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.9e-05 Score=52.37 Aligned_cols=38 Identities=32% Similarity=0.481 Sum_probs=27.6
Q ss_pred CCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC
Q 045837 266 KKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG 304 (527)
Q Consensus 266 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 304 (527)
++|++|+|++|+|+ .++..++++.+|+.|+|++|+|+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46788888888887 455567888888888888888774
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=5.3e-05 Score=76.32 Aligned_cols=137 Identities=13% Similarity=0.188 Sum_probs=85.2
Q ss_pred ccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhcccc-ccccccccccCCCCcce
Q 045837 144 LSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNN-RFSSWIPETIGESTVSV 222 (527)
Q Consensus 144 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~L~~ 222 (527)
+..+.++++|++++|.++ .++. + -.+|+.|+++++.--..++..+ ..+|++|++++| .+.. ++ ..|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~s-LP-----~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISG-LP-----ESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccc-cc-----cccce
Confidence 455688999999999888 4452 2 2469999998854333555433 468999999988 4432 22 24777
Q ss_pred EeccCCcCCccCCCCCCCC-CCCcEEEcccCCCC--CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccC
Q 045837 223 VTFAHNNFSGCVPRSIGNM-PNVNEIILSNNDLM--GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSY 299 (527)
Q Consensus 223 L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 299 (527)
|++..+.... +..+ .+|++|++.+++.. ..++. .-..+|++|++++|... .++..+- .+|++|++++
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 8877655431 2333 35777777543311 01111 11267889999888765 3443333 5888888877
Q ss_pred CC
Q 045837 300 NQ 301 (527)
Q Consensus 300 N~ 301 (527)
|.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 63
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=2e-05 Score=85.74 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC-CChhhccCCCCCCEEEccCCcccccC------CcccCCCC
Q 045837 218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG-CLPSEIGWLKKLTVFDASSNSFYGSV------PQSFSSLE 290 (527)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~------p~~~~~l~ 290 (527)
.+|..||+++++++.. .+++++++|++|.+.+-.+.. ..-..+.+|++|+.||+|........ -+.-..++
T Consensus 173 pNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp 250 (699)
T KOG3665|consen 173 PNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP 250 (699)
T ss_pred CccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc
Confidence 4566666666666643 456677777777776655542 12234556777777777765443111 01223456
Q ss_pred CCcEEeccCCCCCCcc
Q 045837 291 SIHRLVLSYNQLTGYV 306 (527)
Q Consensus 291 ~L~~L~Ls~N~l~~~~ 306 (527)
+|+.||.|+..+.+.+
T Consensus 251 eLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 251 ELRFLDCSGTDINEEI 266 (699)
T ss_pred cccEEecCCcchhHHH
Confidence 7777777776666543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00021 Score=72.13 Aligned_cols=136 Identities=12% Similarity=0.197 Sum_probs=87.3
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCC-CCCcEEEeecCcCcccCCcccccCCcccEEecccC-CCCCCcchhhhccc
Q 045837 119 ELGWLSDLALFHVNSNRFCGIIPESLSNW-KLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYN-NFEGEVPRELFKMK 196 (527)
Q Consensus 119 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~p~~~~~~~ 196 (527)
.+..+.++++|++++|.|+. ++ .+ .+|++|+++++.--..+++.+. .+|++|++++| .+. .++. .
T Consensus 47 r~~~~~~l~~L~Is~c~L~s-LP----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~-----s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIES-LP----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE-----S 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcc-cC----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc-----c
Confidence 45567899999999998874 34 23 3699999988543335665553 68999999998 554 4544 5
Q ss_pred cchhhcccccccc--ccccccCCCCcceEeccCCcCCccCCCCCC-CC-CCCcEEEcccCCCCCCChhhccCCCCCCEEE
Q 045837 197 LDAIFLNNNRFSS--WIPETIGESTVSVVTFAHNNFSGCVPRSIG-NM-PNVNEIILSNNDLMGCLPSEIGWLKKLTVFD 272 (527)
Q Consensus 197 L~~L~L~~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 272 (527)
|+.|++..+.... .++ .+|++|.+.+++.... ..+. .+ .+|++|++++|... .++..+ ..+|+.|+
T Consensus 114 Le~L~L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ 183 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVP-----NGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNI-ILPEKL--PESLQSIT 183 (426)
T ss_pred cceEEeCCCCCcccccCc-----chHhheeccccccccc--cccccccCCcccEEEecCCCcc-cCcccc--cccCcEEE
Confidence 6777776655432 111 2477777754331111 1111 12 57999999998865 444433 26889999
Q ss_pred ccCCc
Q 045837 273 ASSNS 277 (527)
Q Consensus 273 Ls~n~ 277 (527)
++.+.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 88763
No 62
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.53 E-value=0.0027 Score=63.78 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=7.8
Q ss_pred CCCEEEccCCcc
Q 045837 125 DLALFHVNSNRF 136 (527)
Q Consensus 125 ~L~~L~Ls~n~i 136 (527)
.|+.+||.+|+|
T Consensus 78 Flrl~di~~~rl 89 (569)
T KOG3671|consen 78 FLRLVDIVNNRL 89 (569)
T ss_pred eeEEeeecCcee
Confidence 466677777664
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.33 E-value=0.00054 Score=58.30 Aligned_cols=114 Identities=13% Similarity=0.191 Sum_probs=40.8
Q ss_pred CcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837 219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS 298 (527)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 298 (527)
+|+.+.+.. .+.......|.++.+|+.+++.++ +...-...|.++.+|+.+++.+ .+.......|..+.+|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 455555542 333333344555555666665553 3323333455555556665544 2222223344455556665554
Q ss_pred CCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCC
Q 045837 299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSK 338 (527)
Q Consensus 299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (527)
.+ +..+....|.++ +|+.+.+.. .+..+...+|.++.
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~ 126 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCT 126 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG---
T ss_pred cc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccc
Confidence 43 332333344444 555555543 33333333444433
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00018 Score=66.97 Aligned_cols=98 Identities=17% Similarity=0.282 Sum_probs=53.2
Q ss_pred cceEeccCCcCCccCCCCCCCCCCCcEEEcccC--CCCCCChhhccCCCCCCEEEccCCcccccCC--cccCCCCCCcEE
Q 045837 220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN--DLMGCLPSEIGWLKKLTVFDASSNSFYGSVP--QSFSSLESIHRL 295 (527)
Q Consensus 220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L 295 (527)
|+.|.+.+..++.. ..|-.|++|++|.++.| ++.+.+......+.+|++|+|++|+|.. +- ..+..+.+|..|
T Consensus 45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENLKSL 121 (260)
T ss_pred hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcchhhh
Confidence 44444445444432 23445567777777777 5555554444555777777777777652 11 123445566677
Q ss_pred eccCCCCCCcc---hhhhhCCCCCcEEE
Q 045837 296 VLSYNQLTGYV---SEQICKLPNINNFT 320 (527)
Q Consensus 296 ~Ls~N~l~~~~---~~~l~~l~~L~~L~ 320 (527)
++.+|..+... -..|.-+++|++||
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhcccc
Confidence 77777655421 12344455555544
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.10 E-value=0.0013 Score=55.93 Aligned_cols=112 Identities=13% Similarity=0.184 Sum_probs=69.8
Q ss_pred CCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837 236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN 315 (527)
Q Consensus 236 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 315 (527)
..|.++.+|+.+.+.. .+...-...|.++.+|+.+++.++ +.......|.++.+|+.+++.+ .+.......|..+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4577788999999985 566455667888989999999886 6655556788888999999976 555455567888999
Q ss_pred CcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837 316 INNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR 353 (527)
Q Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 353 (527)
|+.+++..+ +..+....|.++ +|+.+.+.. .+..+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i 117 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKI 117 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS-
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEE
Confidence 999999776 666666678887 888888775 44433
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00026 Score=66.02 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCC--cccccCCcccCCCCCCcEEeccCCCCCCc-chhhhhCCC
Q 045837 238 IGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSN--SFYGSVPQSFSSLESIHRLVLSYNQLTGY-VSEQICKLP 314 (527)
Q Consensus 238 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~ 314 (527)
.-.+.+|+.|++.+..++... .|-.+.+|++|+++.| .+.+.+.-....+++|++|+|++|+|..+ --..+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 344567777778777776322 3556789999999999 56655555556679999999999998742 113456777
Q ss_pred CCcEEEecCcccCCC
Q 045837 315 NINNFTFSYNYFQGL 329 (527)
Q Consensus 315 ~L~~L~Ls~N~l~~~ 329 (527)
+|..|++.+|..+..
T Consensus 117 nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNL 131 (260)
T ss_pred chhhhhcccCCcccc
Confidence 888999999877663
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=2.1e-05 Score=73.44 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=60.2
Q ss_pred cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccC-CcccccCCcccEE
Q 045837 99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSF-PNVCLSWTSLRYL 177 (527)
Q Consensus 99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L 177 (527)
+.+++.|++-++++.++ .....|+.|+.|.|+-|+|+... .|..+++|++|+|+.|.|..+- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45667777777777664 23457788888888888887553 3677788888888888776321 1245667778888
Q ss_pred ecccCCCCCCcchh
Q 045837 178 DLRYNNFEGEVPRE 191 (527)
Q Consensus 178 ~Ls~n~i~~~~p~~ 191 (527)
.|..|.-.|.....
T Consensus 94 WL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 94 WLDENPCCGEAGQN 107 (388)
T ss_pred hhccCCcccccchh
Confidence 88877766554443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=3.5e-05 Score=72.03 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=59.3
Q ss_pred cceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCC--cccCCCCCCcEEec
Q 045837 220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP--QSFSSLESIHRLVL 297 (527)
Q Consensus 220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L 297 (527)
++.|++.+|.++++. ....|..|++|.||-|+|+..- .|..|++|++|+|..|.|.. +. ..+.++++|+.|+|
T Consensus 21 vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWL 95 (388)
T ss_pred hhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhh
Confidence 455666666665431 2345677778888888777332 35667777777777777752 22 23567777788888
Q ss_pred cCCCCCCcc-----hhhhhCCCCCcEEE
Q 045837 298 SYNQLTGYV-----SEQICKLPNINNFT 320 (527)
Q Consensus 298 s~N~l~~~~-----~~~l~~l~~L~~L~ 320 (527)
..|--.|.. ...+.-|++|++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 777554432 22455566666665
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.95 E-value=2.9e-05 Score=76.50 Aligned_cols=84 Identities=11% Similarity=0.132 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCCcCCCC--ccccCCCCCCCEEEccCCc-ccccccccc-cCCCCCcEEEeecC-cCcccCCc-ccccCCc
Q 045837 100 TVVAGIDLNGNDIAGYF--PAELGWLSDLALFHVNSNR-FCGIIPESL-SNWKLIYEFDVSNN-RLVGSFPN-VCLSWTS 173 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~ 173 (527)
..|+.|.|+++.-.+.- -....+++++++|++.++. |+...-..+ ..+.+|++|+|..+ .|+...-. ...++.+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46777778777654432 1233467788888887764 332222222 44677888888773 34422211 2345678
Q ss_pred ccEEecccCC
Q 045837 174 LRYLDLRYNN 183 (527)
Q Consensus 174 L~~L~Ls~n~ 183 (527)
|++|+++++.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 8888887764
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.63 E-value=2.5e-05 Score=81.42 Aligned_cols=179 Identities=20% Similarity=0.188 Sum_probs=84.7
Q ss_pred CCEEEccCCccccc----ccccccCCCCCcEEEeecCcCcccCC----cccccC-CcccEEecccCCCCCCcchhhhc--
Q 045837 126 LALFHVNSNRFCGI----IPESLSNWKLIYEFDVSNNRLVGSFP----NVCLSW-TSLRYLDLRYNNFEGEVPRELFK-- 194 (527)
Q Consensus 126 L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l-~~L~~L~Ls~n~i~~~~p~~~~~-- 194 (527)
+..|.|.+|.+... +...+..+..|+.|++++|.+.+.-. ..+... ..|++|++..|.+++.....+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67777777777643 23345556677777777777753211 122222 45666777777666433322221
Q ss_pred ---cccchhhcccccccccc----cccc-----CCCCcceEeccCCcCCccC----CCCCCCCCC-CcEEEcccCCCCCC
Q 045837 195 ---MKLDAIFLNNNRFSSWI----PETI-----GESTVSVVTFAHNNFSGCV----PRSIGNMPN-VNEIILSNNDLMGC 257 (527)
Q Consensus 195 ---~~L~~L~L~~n~l~~~~----~~~~-----~~~~L~~L~L~~n~l~~~~----~~~l~~l~~-L~~L~Ls~N~l~~~ 257 (527)
..++.++++.|.+.... ...+ ...++++|.+++|.++... ...+..... +.+|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 35666666666653210 0011 1123555555555554211 111222223 44455555555422
Q ss_pred ----ChhhccCC-CCCCEEEccCCcccccCC----cccCCCCCCcEEeccCCCCCC
Q 045837 258 ----LPSEIGWL-KKLTVFDASSNSFYGSVP----QSFSSLESIHRLVLSYNQLTG 304 (527)
Q Consensus 258 ----~p~~~~~l-~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~ 304 (527)
+...+..+ ..+++++++.|.|+.... +.+..+..++.|.+++|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 11122233 344555555555543221 223334455555555555543
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.63 E-value=2.2e-05 Score=81.84 Aligned_cols=180 Identities=19% Similarity=0.222 Sum_probs=100.3
Q ss_pred CCcEEEeecCcCccc----CCcccccCCcccEEecccCCCCCCcchhhhc------cccchhhcccccccccccccc---
Q 045837 149 LIYEFDVSNNRLVGS----FPNVCLSWTSLRYLDLRYNNFEGEVPRELFK------MKLDAIFLNNNRFSSWIPETI--- 215 (527)
Q Consensus 149 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~------~~L~~L~L~~n~l~~~~~~~~--- 215 (527)
.+..|.|.+|.+... +...+..+..|..|++++|.+.+..-..+.. ..+++|++..|.+++.....+
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 377888888888643 2234556788888999999887433333322 356777787777766433322
Q ss_pred --CCCCcceEeccCCcCCcc----CCCCCC----CCCCCcEEEcccCCCCCCC----hhhccCCCC-CCEEEccCCcccc
Q 045837 216 --GESTVSVVTFAHNNFSGC----VPRSIG----NMPNVNEIILSNNDLMGCL----PSEIGWLKK-LTVFDASSNSFYG 280 (527)
Q Consensus 216 --~~~~L~~L~L~~n~l~~~----~~~~l~----~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~-L~~L~Ls~n~l~~ 280 (527)
....++.++++.|.+... +...+. ...++++|.+.+|.++... ...+..... +..|++..|++..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 123466777777766421 112222 3556677777776665211 112233333 5556666666643
Q ss_pred cC----CcccCCC-CCCcEEeccCCCCCCc----chhhhhCCCCCcEEEecCcccCC
Q 045837 281 SV----PQSFSSL-ESIHRLVLSYNQLTGY----VSEQICKLPNINNFTFSYNYFQG 328 (527)
Q Consensus 281 ~~----p~~~~~l-~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~ 328 (527)
.. ...+..+ ..++.++++.|.|+.. +.+.+..+.+++++.+++|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 21 1223333 4556666666666543 23334455566666666666653
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.39 E-value=0.00027 Score=69.93 Aligned_cols=250 Identities=13% Similarity=0.050 Sum_probs=138.5
Q ss_pred CCcceEEEEEcCCCCc-CCCCcccc-CCCCCCCEEEccCC-cccccccc-cccCCCCCcEEEeecCc-Cccc-CCccccc
Q 045837 97 SNITVVAGIDLNGNDI-AGYFPAEL-GWLSDLALFHVNSN-RFCGIIPE-SLSNWKLIYEFDVSNNR-LVGS-FPNVCLS 170 (527)
Q Consensus 97 ~~~~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~ 170 (527)
.+++++++|.|.++.. ++..-..+ ..+++|++|++..| .|+...-. -..++++|++|+++.+. |++. +-..+.+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 4667888888888753 22111122 36789999999984 45543322 23568899999998874 3321 1123455
Q ss_pred CCcccEEecccCCCCCCcchhhhc-----cccchhhccccc-cccccccc--cCCCCcceEeccCCcCCcc-CCCC-CCC
Q 045837 171 WTSLRYLDLRYNNFEGEVPRELFK-----MKLDAIFLNNNR-FSSWIPET--IGESTVSVVTFAHNNFSGC-VPRS-IGN 240 (527)
Q Consensus 171 l~~L~~L~Ls~n~i~~~~p~~~~~-----~~L~~L~L~~n~-l~~~~~~~--~~~~~L~~L~L~~n~l~~~-~~~~-l~~ 240 (527)
+++|+.+.+.++.=. --..+.. ..+..+++..|. +++..-.. .+...|+.|..+++...+. .-.. ..+
T Consensus 241 ~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 241 CKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred chhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 667777776654311 1111111 234455554553 33321111 1234578888877654321 1111 234
Q ss_pred CCCCcEEEcccCCC-CCCChhhc-cCCCCCCEEEccCCccc--ccCCcccCCCCCCcEEeccCCCCCCcc-----hhhhh
Q 045837 241 MPNVNEIILSNNDL-MGCLPSEI-GWLKKLTVFDASSNSFY--GSVPQSFSSLESIHRLVLSYNQLTGYV-----SEQIC 311 (527)
Q Consensus 241 l~~L~~L~Ls~N~l-~~~~p~~~-~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~-----~~~l~ 311 (527)
..+|+.|.++.++- +..--..+ .++..|+.+|+.++... +.+...-.++..|+.|.|+++.+.... ...-+
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 57888888888863 21111112 35678888888887653 112222345678888888887543211 12234
Q ss_pred CCCCCcEEEecCcccC-CCCCCCCCCCCCCceecCCCC
Q 045837 312 KLPNINNFTFSYNYFQ-GLGNECIPGSKEGGVFDDTSN 348 (527)
Q Consensus 312 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N 348 (527)
.+..|+.+.|++..+. +..-..+..+++|+.+++-+.
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 5677888888887543 333344556667777666443
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.88 E-value=0.0005 Score=72.63 Aligned_cols=15 Identities=27% Similarity=0.016 Sum_probs=7.4
Q ss_pred cCCCCCCEEEccCCc
Q 045837 263 GWLKKLTVFDASSNS 277 (527)
Q Consensus 263 ~~l~~L~~L~Ls~n~ 277 (527)
..+.+|+.+.|.++.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 344555555555544
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.27 E-value=0.0012 Score=69.84 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=30.9
Q ss_pred cccchhhccccc-cccccccccC--CCCcceEeccCCc-CCccCC-CCCCCCCCCcEEEcccCCC
Q 045837 195 MKLDAIFLNNNR-FSSWIPETIG--ESTVSVVTFAHNN-FSGCVP-RSIGNMPNVNEIILSNNDL 254 (527)
Q Consensus 195 ~~L~~L~L~~n~-l~~~~~~~~~--~~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~Ls~N~l 254 (527)
.+|+.|+++++. +++..-..+. ..+|++|.+.++. +++..- .....+.+|++|+|+++..
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 456666666665 3332222222 2357777766555 343211 1223456677777777654
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.78 E-value=0.015 Score=32.64 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=5.5
Q ss_pred CCEEEccCCccc
Q 045837 268 LTVFDASSNSFY 279 (527)
Q Consensus 268 L~~L~Ls~n~l~ 279 (527)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.46 E-value=0.00064 Score=62.18 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=47.8
Q ss_pred CCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCc
Q 045837 238 IGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNIN 317 (527)
Q Consensus 238 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 317 (527)
+..+...+.||++.|++. .+-..|+.++.|..||++.|++. .+++.+++...+..+++.+|.++ ..|.++...++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344455566666666554 34444555555666666666654 45555555555555555555554 3455555556666
Q ss_pred EEEecCccc
Q 045837 318 NFTFSYNYF 326 (527)
Q Consensus 318 ~L~Ls~N~l 326 (527)
++++.+|.|
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 666555544
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.26 E-value=0.023 Score=31.84 Aligned_cols=12 Identities=17% Similarity=0.420 Sum_probs=5.4
Q ss_pred CCEEEccCCccc
Q 045837 126 LALFHVNSNRFC 137 (527)
Q Consensus 126 L~~L~Ls~n~i~ 137 (527)
|++|+|++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.44 E-value=0.0019 Score=59.19 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=71.8
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 175 (527)
...+++++.||++.|++.. +-..|.-++.|..|+++.|.|. ..+.++..+..++.+++.+|+.. ..|.++..+..++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 4567889999999998754 2346777788899999999887 56778888888999999999887 6788888999999
Q ss_pred EEecccCCCC
Q 045837 176 YLDLRYNNFE 185 (527)
Q Consensus 176 ~L~Ls~n~i~ 185 (527)
++++..|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9999998865
No 79
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=92.80 E-value=0.11 Score=34.59 Aligned_cols=20 Identities=35% Similarity=0.772 Sum_probs=13.1
Q ss_pred ccCCCCCC---CCCccccceeeC
Q 045837 72 TRQGNWVG---TDVCSYYGVFCA 91 (527)
Q Consensus 72 ~~~~~w~~---~~~c~~~gv~c~ 91 (527)
..+.+|.. .++|+|.||+|+
T Consensus 21 ~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 21 GVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp CCCTT--TT--S-CCCSTTEEE-
T ss_pred cccccCCCcCCCCCeeeccEEeC
Confidence 44678964 699999999994
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=0.02 Score=51.58 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccc-cccc-CCCCCcEEEeecC-cCcccCCcccccCCcccE
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP-ESLS-NWKLIYEFDVSNN-RLVGSFPNVCLSWTSLRY 176 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 176 (527)
..++.+|-++..|..+--+.+.+++.|+.|.+.++.-.+... +.++ -..+|+.|+|++| +|+..--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 458889999988876655677778888888888875443211 1122 3467888888866 566544445666788888
Q ss_pred EecccC
Q 045837 177 LDLRYN 182 (527)
Q Consensus 177 L~Ls~n 182 (527)
|.|++=
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 777653
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=0.014 Score=52.59 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=54.3
Q ss_pred CCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCC-cccC-CCCCCcEEeccCC-CCCCcchhhhhCCCCCcEE
Q 045837 243 NVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP-QSFS-SLESIHRLVLSYN-QLTGYVSEQICKLPNINNF 319 (527)
Q Consensus 243 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~-~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L 319 (527)
.++.+|-++..|..+--+.+.++..|+.|.+.+|.-.+..- +.++ -..+|+.|+|++| +|+...-..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 57788888888876666667777888888887775321100 0111 2367888888877 6776666677777777777
Q ss_pred EecC
Q 045837 320 TFSY 323 (527)
Q Consensus 320 ~Ls~ 323 (527)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7655
No 82
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.32 E-value=0.19 Score=26.11 Aligned_cols=13 Identities=46% Similarity=0.636 Sum_probs=4.6
Q ss_pred cccEEecccCCCC
Q 045837 173 SLRYLDLRYNNFE 185 (527)
Q Consensus 173 ~L~~L~Ls~n~i~ 185 (527)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=89.96 E-value=1.3 Score=45.28 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=12.4
Q ss_pred ceEEEEEcCCCCcCCCCc
Q 045837 100 TVVAGIDLNGNDIAGYFP 117 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~ 117 (527)
.+++.++++.|.+....+
T Consensus 165 pr~r~~dls~npi~dkvp 182 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVP 182 (553)
T ss_pred chhhhhccCCCcccccCC
Confidence 466788888887765544
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=88.79 E-value=1 Score=45.98 Aligned_cols=245 Identities=14% Similarity=0.051 Sum_probs=134.3
Q ss_pred EEcCCCCcCCCCccccC---CCCCCCEEEccCCcccccccccccCC---CCCcEEEeecCcCcc---cCCcccccCCccc
Q 045837 105 IDLNGNDIAGYFPAELG---WLSDLALFHVNSNRFCGIIPESLSNW---KLIYEFDVSNNRLVG---SFPNVCLSWTSLR 175 (527)
Q Consensus 105 L~L~~n~l~~~~~~~l~---~l~~L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~ 175 (527)
+.++.+.++..+-..+. .-..+.+++|+.|.....++..+..+ .-|++++.+...+.. .-+..+..-.+|.
T Consensus 192 l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~ 271 (553)
T KOG4242|consen 192 LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLT 271 (553)
T ss_pred cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccc
Confidence 56666665543222111 12357899999998877666544322 347788887776641 1112233456788
Q ss_pred EEecccCCCCCC----cch---hhhc--cccchhhcccccccccccccc--CC----C-CcceEeccCCcCCccCC--CC
Q 045837 176 YLDLRYNNFEGE----VPR---ELFK--MKLDAIFLNNNRFSSWIPETI--GE----S-TVSVVTFAHNNFSGCVP--RS 237 (527)
Q Consensus 176 ~L~Ls~n~i~~~----~p~---~~~~--~~L~~L~L~~n~l~~~~~~~~--~~----~-~L~~L~L~~n~l~~~~~--~~ 237 (527)
+.+++.|..+-. +.. ..+. .++ +|++.+++........+ +. . .-.++++..|...+.-- ..
T Consensus 272 ~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleac 350 (553)
T KOG4242|consen 272 FGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEAC 350 (553)
T ss_pred hhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhcc
Confidence 888888865411 111 1122 356 77877777654433322 11 1 12355666655553211 11
Q ss_pred CCCCCCCcEEEcccCCCCCCChhh--ccCCCCCCEEEccCCccccc-CCccc--------CCCCCCcEEeccCCCCCCcc
Q 045837 238 IGNMPNVNEIILSNNDLMGCLPSE--IGWLKKLTVFDASSNSFYGS-VPQSF--------SSLESIHRLVLSYNQLTGYV 306 (527)
Q Consensus 238 l~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~~-~p~~~--------~~l~~L~~L~Ls~N~l~~~~ 306 (527)
+.+ ..+++|.++.|++.+..... +..-+.++.+++.+-.-..+ +.... ....-+..+.++.|.+....
T Consensus 351 i~g-~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l 429 (553)
T KOG4242|consen 351 IFG-QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGL 429 (553)
T ss_pred ccc-eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccH
Confidence 222 35999999999988765433 33456778888766432111 11111 11234678889999887543
Q ss_pred h---hhhhCCCCCcEEEecCcccCCCC----CCCCCCCCCCceecCCCCCCC
Q 045837 307 S---EQICKLPNINNFTFSYNYFQGLG----NECIPGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 307 ~---~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~ 351 (527)
- ..+...+.+..|++++|...... +........++.+..+.|...
T Consensus 430 ~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 430 ESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred HHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 2 23456678999999999776432 222333334555555555443
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.60 E-value=0.36 Score=28.07 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=10.3
Q ss_pred CcccEEecccCCCCCCcchh
Q 045837 172 TSLRYLDLRYNNFEGEVPRE 191 (527)
Q Consensus 172 ~~L~~L~Ls~n~i~~~~p~~ 191 (527)
.+|++|+|++|.|+ .++..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45556666666555 44443
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.60 E-value=0.36 Score=28.07 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=10.3
Q ss_pred CcccEEecccCCCCCCcchh
Q 045837 172 TSLRYLDLRYNNFEGEVPRE 191 (527)
Q Consensus 172 ~~L~~L~Ls~n~i~~~~p~~ 191 (527)
.+|++|+|++|.|+ .++..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45556666666555 44443
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.85 E-value=0.66 Score=26.92 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=6.0
Q ss_pred CCcEEeccCCCCC
Q 045837 291 SIHRLVLSYNQLT 303 (527)
Q Consensus 291 ~L~~L~Ls~N~l~ 303 (527)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 88
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.85 E-value=0.66 Score=26.92 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=6.0
Q ss_pred CCcEEeccCCCCC
Q 045837 291 SIHRLVLSYNQLT 303 (527)
Q Consensus 291 ~L~~L~Ls~N~l~ 303 (527)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.75 E-value=0.19 Score=28.60 Aligned_cols=13 Identities=46% Similarity=0.554 Sum_probs=4.7
Q ss_pred CCcEEeccCCCCC
Q 045837 291 SIHRLVLSYNQLT 303 (527)
Q Consensus 291 ~L~~L~Ls~N~l~ 303 (527)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 90
>PRK09718 hypothetical protein; Validated
Probab=81.27 E-value=2.6 Score=43.45 Aligned_cols=31 Identities=10% Similarity=-0.012 Sum_probs=16.6
Q ss_pred cEEEcccCCCCCCChhhccCCCCCCEEEccCCccc
Q 045837 245 NEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY 279 (527)
Q Consensus 245 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 279 (527)
+...+.++.+.+. .| .-..|+.+|++.|.+.
T Consensus 211 Kka~F~~cDLt~A---dF-~qT~LkgVDFSdC~Le 241 (512)
T PRK09718 211 KEISFIKSNLTAV---MF-DHVRISTGNFKDCITE 241 (512)
T ss_pred CCCEEeCCCCCCC---Cc-CCCcCCCccccccccc
Confidence 4455555555422 12 1356677777777665
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.63 E-value=2.1 Score=25.06 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=6.7
Q ss_pred CCcEEeccCCCCC
Q 045837 291 SIHRLVLSYNQLT 303 (527)
Q Consensus 291 ~L~~L~Ls~N~l~ 303 (527)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4555555555554
No 92
>PRK09718 hypothetical protein; Validated
Probab=75.77 E-value=8.4 Score=39.84 Aligned_cols=74 Identities=7% Similarity=0.083 Sum_probs=35.6
Q ss_pred cccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCc---ceEeccCCcCCccCCCCCCCCCCCcEEEc
Q 045837 173 SLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTV---SVVTFAHNNFSGCVPRSIGNMPNVNEIIL 249 (527)
Q Consensus 173 ~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L---~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 249 (527)
.|+...+.++.+.+. .+...+|+...+.+|++.+.. |....+ +...+.++.+.+. .|.+ ..|+.+|+
T Consensus 166 ~Lk~V~FsdCnL~yA---nFsgAnLskA~F~gCDLseAd---FSEcdLS~aKka~F~~cDLt~A---dF~q-T~LkgVDF 235 (512)
T PRK09718 166 ILDTVDFSQSQLTHS---NFRECQIRNSNFDNCYLYASH---FTRAEFLSAKEISFIKSNLTAV---MFDH-VRISTGNF 235 (512)
T ss_pred ccCCcEEeeeEeccc---CCCCCcCCCCEEeCccCCcCC---ccCCccCCCCCCEEeCCCCCCC---CcCC-CcCCCccc
Confidence 344444444444321 122345555555555554422 222222 4555555554432 1222 46777888
Q ss_pred ccCCCCC
Q 045837 250 SNNDLMG 256 (527)
Q Consensus 250 s~N~l~~ 256 (527)
+.|.+.+
T Consensus 236 SdC~Le~ 242 (512)
T PRK09718 236 KDCITEQ 242 (512)
T ss_pred ccccccc
Confidence 8887763
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.39 E-value=1.5 Score=45.73 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=42.3
Q ss_pred cCCCCCCEEEccCCccccc--CCcccCCCCCCcEEeccCC--CCCCcchhhhhCC--CCCcEEEecCcccCCC
Q 045837 263 GWLKKLTVFDASSNSFYGS--VPQSFSSLESIHRLVLSYN--QLTGYVSEQICKL--PNINNFTFSYNYFQGL 329 (527)
Q Consensus 263 ~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~l--~~L~~L~Ls~N~l~~~ 329 (527)
.+...+..++|++|++... +...-...++|+.|+|++| .+.. ..++.++ ..|++|-|.+|.++..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 3456778889999988622 1112234478999999999 4432 2334333 3477899999988753
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.06 E-value=2.2 Score=44.61 Aligned_cols=62 Identities=29% Similarity=0.293 Sum_probs=30.6
Q ss_pred CCCCcEEEcccCCCCCC--ChhhccCCCCCCEEEccCC--cccccCCcccCC--CCCCcEEeccCCCCCC
Q 045837 241 MPNVNEIILSNNDLMGC--LPSEIGWLKKLTVFDASSN--SFYGSVPQSFSS--LESIHRLVLSYNQLTG 304 (527)
Q Consensus 241 l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~ 304 (527)
...+..++|++|++... +.......++|+.|+|++| .+.. ..++.+ ...|++|.|.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 34566666666666521 1111123456677777776 3321 112221 2356677777776653
No 95
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.74 E-value=3 Score=24.75 Aligned_cols=13 Identities=46% Similarity=0.516 Sum_probs=7.4
Q ss_pred CCcEEeccCCCCC
Q 045837 291 SIHRLVLSYNQLT 303 (527)
Q Consensus 291 ~L~~L~Ls~N~l~ 303 (527)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555556555554
No 96
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=60.93 E-value=13 Score=29.63 Aligned_cols=25 Identities=16% Similarity=0.281 Sum_probs=12.4
Q ss_pred CccchhHHHHHHHHhhhhhhhhhccH
Q 045837 1 MQVVGCLVLFSLICSSFSSFSFALSD 26 (527)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (527)
|. .+.|++|.+++++++.++.+.+.
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhhh
Confidence 66 34555555555544444444333
No 97
>PHA03378 EBNA-3B; Provisional
Probab=59.81 E-value=2.6e+02 Score=30.44 Aligned_cols=7 Identities=43% Similarity=0.183 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 045837 345 DTSNCLA 351 (527)
Q Consensus 345 l~~N~l~ 351 (527)
+.+|.+.
T Consensus 641 ~~f~~~~ 647 (991)
T PHA03378 641 ITFNVLV 647 (991)
T ss_pred ccccccc
Confidence 4555444
No 98
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=54.52 E-value=8.5 Score=22.51 Aligned_cols=15 Identities=20% Similarity=0.177 Sum_probs=7.7
Q ss_pred CceecCCCCCCCCCC
Q 045837 340 GGVFDDTSNCLAQRP 354 (527)
Q Consensus 340 L~~L~l~~N~l~~~~ 354 (527)
|+.|++++|.|+..|
T Consensus 4 L~~L~vs~N~Lt~LP 18 (26)
T smart00364 4 LKELNVSNNQLTSLP 18 (26)
T ss_pred cceeecCCCccccCc
Confidence 445555555555444
No 99
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=52.81 E-value=17 Score=33.47 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=5.7
Q ss_pred CCcEEEcccCCCC
Q 045837 243 NVNEIILSNNDLM 255 (527)
Q Consensus 243 ~L~~L~Ls~N~l~ 255 (527)
+|+.-+|.++.+.
T Consensus 217 NLeganLkG~~~e 229 (302)
T KOG1665|consen 217 NLEGANLKGADME 229 (302)
T ss_pred ccccccccccccc
Confidence 4444444444443
No 100
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=50.17 E-value=18 Score=33.32 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=5.5
Q ss_pred CCcEEEcccCCCC
Q 045837 243 NVNEIILSNNDLM 255 (527)
Q Consensus 243 ~L~~L~Ls~N~l~ 255 (527)
+++--.|.+|++.
T Consensus 197 N~eGA~L~gcNfe 209 (302)
T KOG1665|consen 197 NAEGASLKGCNFE 209 (302)
T ss_pred ccccccccCcCCC
Confidence 3344444444443
No 101
>PRK15196 secreted effector protein PipB2; Provisional
Probab=43.69 E-value=41 Score=33.92 Aligned_cols=8 Identities=0% Similarity=0.231 Sum_probs=3.1
Q ss_pred EEccCCcc
Q 045837 129 FHVNSNRF 136 (527)
Q Consensus 129 L~Ls~n~i 136 (527)
++|++..+
T Consensus 152 ~~L~ga~L 159 (350)
T PRK15196 152 MNLKGAVL 159 (350)
T ss_pred ccccCCcc
Confidence 34444333
No 102
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.99 E-value=18 Score=45.43 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=23.0
Q ss_pred EccCCcccccCCcccCCCCCCcEEeccCCCCC
Q 045837 272 DASSNSFYGSVPQSFSSLESIHRLVLSYNQLT 303 (527)
Q Consensus 272 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 303 (527)
||++|+|+.+-...|..+.+|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57777777555556777777788888877765
No 103
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.51 E-value=39 Score=19.33 Aligned_cols=10 Identities=30% Similarity=0.208 Sum_probs=5.1
Q ss_pred CCcEEeccCC
Q 045837 291 SIHRLVLSYN 300 (527)
Q Consensus 291 ~L~~L~Ls~N 300 (527)
+|++|+|+++
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4555555554
No 104
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=30.08 E-value=34 Score=17.94 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=4.7
Q ss_pred hHHHHHHHHhhh
Q 045837 6 CLVLFSLICSSF 17 (527)
Q Consensus 6 ~~~~~~~~~~~~ 17 (527)
++++++++.++|
T Consensus 5 vIIlvvLLliSf 16 (19)
T PF13956_consen 5 VIILVVLLLISF 16 (19)
T ss_pred hHHHHHHHhccc
Confidence 333344443433
No 105
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.07 E-value=34 Score=43.27 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=23.9
Q ss_pred EcCCCCcCCCCccccCCCCCCCEEEccCCccc
Q 045837 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFC 137 (527)
Q Consensus 106 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 137 (527)
||++|+|..+-...|..+.+|++|+|++|-+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57778887766667777778888888877665
No 106
>PRK15196 secreted effector protein PipB2; Provisional
Probab=27.45 E-value=1.3e+02 Score=30.45 Aligned_cols=8 Identities=13% Similarity=0.210 Sum_probs=3.4
Q ss_pred EEEcCCCC
Q 045837 104 GIDLNGND 111 (527)
Q Consensus 104 ~L~L~~n~ 111 (527)
.++++.+.
T Consensus 105 ~v~v~~~~ 112 (350)
T PRK15196 105 IVRVSKGD 112 (350)
T ss_pred EEEEecCC
Confidence 34444443
No 107
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=27.23 E-value=52 Score=22.08 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=11.4
Q ss_pred CccchhHHHHHH--HHhhhhhhh
Q 045837 1 MQVVGCLVLFSL--ICSSFSSFS 21 (527)
Q Consensus 1 M~~~~~~~~~~~--~~~~~~~~~ 21 (527)
||.++.++++++ .|+++..++
T Consensus 1 ~kk~rwiili~iv~~Cl~lyl~a 23 (47)
T PRK10299 1 MKKFRWVVLVVVVLACLLLWAQV 23 (47)
T ss_pred CceeeehHHHHHHHHHHHHHHHH
Confidence 888777665333 344443333
No 108
>PRK15197 secreted effector protein PipB; Provisional
Probab=26.71 E-value=1.1e+02 Score=30.01 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=7.3
Q ss_pred CCcEEeccCCCCC
Q 045837 291 SIHRLVLSYNQLT 303 (527)
Q Consensus 291 ~L~~L~Ls~N~l~ 303 (527)
.|+..++.+..++
T Consensus 261 ~L~gad~~ga~~t 273 (291)
T PRK15197 261 ALTGADLTGSQHT 273 (291)
T ss_pred CCCCCcccCCccC
Confidence 5555556655554
No 109
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=25.61 E-value=61 Score=23.71 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=11.0
Q ss_pred CccchhHHHHHHHHhhhhhh
Q 045837 1 MQVVGCLVLFSLICSSFSSF 20 (527)
Q Consensus 1 M~~~~~~~~~~~~~~~~~~~ 20 (527)
||.|.++++++++..+.-++
T Consensus 1 MKhFaiLilavVaSAvVMAy 20 (78)
T PF11714_consen 1 MKHFAILILAVVASAVVMAY 20 (78)
T ss_pred CchHHHHHHHHHHHHHHHhc
Confidence 78766665555544444333
No 110
>PRK15197 secreted effector protein PipB; Provisional
Probab=24.78 E-value=1.2e+02 Score=29.71 Aligned_cols=54 Identities=9% Similarity=0.058 Sum_probs=26.7
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccC
Q 045837 267 KLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ 327 (527)
Q Consensus 267 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 327 (527)
.|+..+|++..+.+. .|.+ ..|+.-+|.+..|.+. .|...+.|+..++.+.+++
T Consensus 220 dL~~A~Ls~A~L~gA---~L~g-AdLs~A~L~gAnL~~A---~L~~a~~L~gad~~ga~~t 273 (291)
T PRK15197 220 DLTCANMSGVNLTAA---ILFG-SDLTDTKLNGAKLDKI---ALTLAKALTGADLTGSQHT 273 (291)
T ss_pred cCceeecCccCcCCC---EeCC-CCcCCCCCCCCCCCcc---ccccCCCCCCCcccCCccC
Confidence 344555555555432 1221 2445555555555543 3334445666667776666
No 111
>PRK14762 membrane protein; Provisional
Probab=23.14 E-value=95 Score=17.79 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=7.7
Q ss_pred CccchhHHHHHHH
Q 045837 1 MQVVGCLVLFSLI 13 (527)
Q Consensus 1 M~~~~~~~~~~~~ 13 (527)
||+.++++.++|+
T Consensus 1 mki~lw~i~iifl 13 (27)
T PRK14762 1 MKIILWAVLIIFL 13 (27)
T ss_pred CeeHHHHHHHHHH
Confidence 7886665544444
No 112
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=23.07 E-value=97 Score=34.34 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=5.0
Q ss_pred CCEEEccCCcc
Q 045837 268 LTVFDASSNSF 278 (527)
Q Consensus 268 L~~L~Ls~n~l 278 (527)
|+.++|.+|.+
T Consensus 314 l~~i~l~g~~i 324 (782)
T PRK15377 314 PPSVSLGGNFI 324 (782)
T ss_pred ccccccCccee
Confidence 34444444444
No 113
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=22.66 E-value=7.3e+02 Score=24.85 Aligned_cols=87 Identities=25% Similarity=0.467 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045837 419 PPTPKPLTPVPTPLPPVNSPNPPPRNWRVRSHTPPQPWRPSAPAPEPSKPLLPPVQYPPSSVQSTPPPSPLPQSPPPPPS 498 (527)
Q Consensus 419 ~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pp~p~~~~~~p~~~ 498 (527)
++..++......++.++--++++....+-+..+.+++.+-.-... ....+.+++..+....-++-....+++++....
T Consensus 287 PplapP~~tsa~Pplp~~~PPPPvrd~p~r~ap~pppPPv~r~~s--ar~~P~pPp~~~~~ts~~P~~~~rpP~PPs~~~ 364 (437)
T KOG4462|consen 287 PPLAPPPPTSAAPPLPPKVPPPPVRDPPSRAAPAPPPPPVSRTGS--ARDAPAPPPPAPNVTSESPKSGNRPPPPPSRSP 364 (437)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCcccccCCCCCCCccccccc--cccCCCCCCCcccccccCCCcCCCCCCCCCccc
Q ss_pred CCCCCCCCC
Q 045837 499 VKYPPPVQS 507 (527)
Q Consensus 499 ~~~~~~~~~ 507 (527)
...++++++
T Consensus 365 A~~PPPPPP 373 (437)
T KOG4462|consen 365 APAPPPPPP 373 (437)
T ss_pred CCCCCCCCC
Done!