Query 045837
Match_columns 527
No_of_seqs 505 out of 4543
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 10:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-37 9.1E-42 307.0 18.9 274 74-353 24-307 (313)
2 3rgz_A Protein brassinosteroid 100.0 3.3E-34 1.1E-38 318.7 19.4 276 99-374 393-743 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 1.8E-32 6.3E-37 286.3 24.5 279 96-374 50-411 (455)
4 4eco_A Uncharacterized protein 100.0 1.6E-33 5.6E-38 306.3 16.4 270 74-354 57-449 (636)
5 3v47_A TOLL-like receptor 5B a 100.0 3.9E-32 1.3E-36 283.9 18.4 260 96-355 75-412 (455)
6 2id5_A Lingo-1, leucine rich r 100.0 1.2E-31 4E-36 282.1 19.5 259 96-354 52-312 (477)
7 3rgz_A Protein brassinosteroid 100.0 1.2E-31 4E-36 298.1 19.2 254 101-354 369-696 (768)
8 4ecn_A Leucine-rich repeat pro 100.0 5.4E-31 1.9E-35 292.4 19.2 258 86-354 315-689 (876)
9 4fcg_A Uncharacterized protein 100.0 6.8E-31 2.3E-35 262.4 14.8 258 79-354 57-317 (328)
10 1ogq_A PGIP-2, polygalacturona 100.0 4.4E-31 1.5E-35 262.2 12.7 249 124-374 50-307 (313)
11 2id5_A Lingo-1, leucine rich r 100.0 4.1E-30 1.4E-34 270.3 20.5 260 95-354 75-336 (477)
12 3t6q_A CD180 antigen; protein- 100.0 1.4E-29 4.9E-34 274.1 22.7 277 96-374 274-563 (606)
13 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-29 7.6E-34 272.7 22.9 158 218-375 399-562 (606)
14 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.5E-29 1.9E-33 267.1 25.7 153 218-373 353-512 (562)
15 1xku_A Decorin; proteoglycan, 100.0 1.2E-28 4E-33 246.5 24.3 264 81-351 29-306 (330)
16 2z80_A TOLL-like receptor 2, v 100.0 1.9E-29 6.6E-34 254.7 17.4 255 99-354 51-317 (353)
17 1xku_A Decorin; proteoglycan, 100.0 2.9E-28 1E-32 243.7 25.2 263 101-372 32-307 (330)
18 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-28 4.2E-33 270.5 24.1 280 96-375 325-626 (680)
19 3oja_B Anopheles plasmodium-re 100.0 1.9E-29 6.6E-34 272.5 17.3 269 100-373 51-360 (597)
20 2z7x_B TOLL-like receptor 1, v 100.0 7.5E-29 2.6E-33 263.5 21.5 154 218-374 324-484 (520)
21 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-28 5E-33 246.1 22.2 262 82-351 32-307 (332)
22 3o6n_A APL1; leucine-rich repe 100.0 3.7E-29 1.3E-33 256.1 17.7 269 100-373 45-354 (390)
23 3o6n_A APL1; leucine-rich repe 100.0 8.2E-29 2.8E-33 253.6 19.9 246 96-352 89-353 (390)
24 4eco_A Uncharacterized protein 100.0 2.6E-29 8.8E-34 273.3 15.3 255 96-354 202-504 (636)
25 2z66_A Variable lymphocyte rec 100.0 1.9E-28 6.5E-33 242.3 17.6 248 82-353 6-263 (306)
26 2ft3_A Biglycan; proteoglycan, 100.0 4.6E-28 1.6E-32 242.5 20.6 249 95-349 73-331 (332)
27 2z7x_B TOLL-like receptor 1, v 100.0 5E-28 1.7E-32 257.2 21.3 249 96-351 41-412 (520)
28 3t6q_A CD180 antigen; protein- 100.0 6.1E-28 2.1E-32 261.3 22.4 253 101-354 255-516 (606)
29 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-27 6.1E-32 258.5 25.4 135 240-374 443-583 (635)
30 2z66_A Variable lymphocyte rec 100.0 2.8E-28 9.6E-33 241.1 17.3 210 96-328 48-262 (306)
31 3oja_B Anopheles plasmodium-re 100.0 5.1E-28 1.7E-32 261.3 20.2 246 96-352 95-359 (597)
32 3zyi_A Leucine-rich repeat-con 100.0 1.3E-27 4.6E-32 249.4 22.6 228 100-352 75-304 (452)
33 3j0a_A TOLL-like receptor 5; m 100.0 9.2E-28 3.2E-32 269.5 22.5 259 95-353 68-377 (844)
34 3zyj_A Leucine-rich repeat-con 100.0 1.5E-27 5.1E-32 248.1 22.4 228 100-352 64-293 (440)
35 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-27 4.1E-32 268.6 23.1 262 95-356 43-356 (844)
36 2z63_A TOLL-like receptor 4, v 100.0 6.4E-28 2.2E-32 259.1 20.0 278 96-374 72-534 (570)
37 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-27 3.9E-32 256.9 21.7 257 96-357 72-469 (562)
38 2z81_A CD282 antigen, TOLL-lik 100.0 1E-27 3.4E-32 256.5 20.8 111 244-356 312-428 (549)
39 3zyi_A Leucine-rich repeat-con 100.0 2.3E-27 7.7E-32 247.7 21.2 212 95-329 94-305 (452)
40 4ecn_A Leucine-rich repeat pro 99.9 3.7E-27 1.3E-31 261.7 21.6 267 96-371 511-840 (876)
41 2z81_A CD282 antigen, TOLL-lik 99.9 4.4E-27 1.5E-31 251.5 21.0 277 95-374 69-513 (549)
42 1wwl_A Monocyte differentiatio 99.9 4.2E-29 1.4E-33 247.8 4.8 246 98-353 41-311 (312)
43 4fmz_A Internalin; leucine ric 99.9 1.5E-26 5.3E-31 232.7 23.3 244 96-354 84-327 (347)
44 3zyj_A Leucine-rich repeat-con 99.9 8.8E-27 3E-31 242.3 21.2 211 95-328 83-293 (440)
45 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-27 1.5E-31 230.0 17.6 223 103-328 14-239 (285)
46 1ozn_A Reticulon 4 receptor; N 99.9 2E-27 6.8E-32 232.5 14.5 237 98-336 30-270 (285)
47 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-26 4.7E-31 254.2 22.7 254 97-350 70-365 (680)
48 3vq2_A TLR4, TOLL-like recepto 99.9 3.6E-27 1.2E-31 255.3 16.5 252 96-354 303-561 (606)
49 2o6q_A Variable lymphocyte rec 99.9 4.9E-26 1.7E-30 220.8 22.0 219 80-329 2-220 (270)
50 3o53_A Protein LRIM1, AGAP0063 99.9 2E-27 6.9E-32 236.2 12.2 238 102-351 12-250 (317)
51 4fmz_A Internalin; leucine ric 99.9 4.1E-26 1.4E-30 229.6 21.6 239 97-350 107-345 (347)
52 2z80_A TOLL-like receptor 2, v 99.9 7.5E-27 2.6E-31 235.7 13.5 265 106-374 37-317 (353)
53 2z63_A TOLL-like receptor 4, v 99.9 5.2E-26 1.8E-30 244.2 19.6 253 96-355 278-535 (570)
54 1o6v_A Internalin A; bacterial 99.9 2.6E-25 9.1E-30 232.9 23.5 243 96-354 86-369 (466)
55 1o6v_A Internalin A; bacterial 99.9 3E-25 1E-29 232.5 20.9 246 96-357 108-394 (466)
56 3oja_A Leucine-rich immune mol 99.9 3.3E-26 1.1E-30 240.7 13.5 218 98-351 32-250 (487)
57 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-27 1.1E-31 234.7 5.0 238 98-348 32-272 (317)
58 4g8a_A TOLL-like receptor 4; l 99.9 7.3E-25 2.5E-29 237.9 23.3 132 222-353 449-582 (635)
59 4fcg_A Uncharacterized protein 99.9 2.1E-25 7.2E-30 222.6 16.3 208 96-329 100-316 (328)
60 3bz5_A Internalin-J, INLJ; leu 99.9 2E-24 6.7E-29 225.2 23.6 188 97-305 61-248 (457)
61 1wwl_A Monocyte differentiatio 99.9 1.9E-26 6.4E-31 228.7 6.6 223 101-329 64-311 (312)
62 3oja_A Leucine-rich immune mol 99.9 3.2E-26 1.1E-30 240.8 8.6 213 96-322 54-270 (487)
63 2z62_A TOLL-like receptor 4, v 99.9 2.1E-24 7.2E-29 210.0 19.4 206 124-352 28-238 (276)
64 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-24 8.6E-29 224.4 20.7 237 96-353 81-354 (457)
65 2z62_A TOLL-like receptor 4, v 99.9 3E-24 1E-28 208.9 16.2 207 100-329 28-239 (276)
66 1jl5_A Outer protein YOPM; leu 99.9 2.2E-24 7.5E-29 224.7 14.3 232 99-354 10-273 (454)
67 3goz_A Leucine-rich repeat-con 99.9 2.5E-25 8.6E-30 225.3 5.6 250 104-353 2-299 (362)
68 3m19_A Variable lymphocyte rec 99.9 3.6E-23 1.2E-27 198.4 18.4 191 81-304 3-193 (251)
69 1p9a_G Platelet glycoprotein I 99.9 4.7E-23 1.6E-27 201.8 19.2 202 98-328 8-209 (290)
70 3rfs_A Internalin B, repeat mo 99.9 2.8E-23 9.6E-28 201.6 17.1 206 98-336 39-244 (272)
71 2o6q_A Variable lymphocyte rec 99.9 1.6E-22 5.6E-27 196.0 21.7 199 85-305 18-220 (270)
72 1p9a_G Platelet glycoprotein I 99.9 1.2E-22 4E-27 199.0 19.9 205 119-352 5-209 (290)
73 1jl5_A Outer protein YOPM; leu 99.9 1.6E-22 5.5E-27 210.6 21.4 121 100-232 131-251 (454)
74 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-22 4.2E-27 218.3 19.2 220 100-351 61-297 (622)
75 2xwt_C Thyrotropin receptor; s 99.9 1.5E-22 5E-27 192.6 17.6 196 125-348 32-236 (239)
76 3rfs_A Internalin B, repeat mo 99.9 5.3E-23 1.8E-27 199.7 13.6 219 99-353 18-237 (272)
77 4glp_A Monocyte differentiatio 99.9 3.2E-23 1.1E-27 205.1 12.3 225 100-352 64-308 (310)
78 2ca6_A RAN GTPase-activating p 99.9 1.7E-24 5.7E-29 221.2 1.2 233 98-330 30-319 (386)
79 2ca6_A RAN GTPase-activating p 99.9 6.7E-24 2.3E-28 216.7 4.1 239 116-354 24-319 (386)
80 2ast_B S-phase kinase-associat 99.9 3.4E-24 1.2E-28 214.5 1.1 259 83-356 37-311 (336)
81 1h6u_A Internalin H; cell adhe 99.9 5.6E-22 1.9E-26 196.0 16.0 194 98-329 39-232 (308)
82 1z7x_W Ribonuclease inhibitor; 99.9 5.7E-25 1.9E-29 229.8 -6.7 255 98-352 111-412 (461)
83 3m19_A Variable lymphocyte rec 99.9 2.1E-21 7.3E-26 186.0 18.7 179 149-353 15-194 (251)
84 3goz_A Leucine-rich repeat-con 99.9 2.8E-23 9.4E-28 210.3 4.5 231 99-329 21-299 (362)
85 1z7x_W Ribonuclease inhibitor; 99.9 3.3E-24 1.1E-28 224.1 -4.6 252 101-352 86-384 (461)
86 2xwt_C Thyrotropin receptor; s 99.9 3.9E-21 1.3E-25 182.7 15.6 183 149-356 32-223 (239)
87 1h6u_A Internalin H; cell adhe 99.9 3E-21 1E-25 190.8 15.4 173 96-304 59-231 (308)
88 2ast_B S-phase kinase-associat 99.8 3E-22 1E-26 200.3 5.6 233 100-336 70-315 (336)
89 3cvr_A Invasion plasmid antige 99.8 3.9E-21 1.3E-25 204.2 13.7 198 84-314 49-254 (571)
90 3g06_A SSPH2 (leucine-rich rep 99.8 6.2E-20 2.1E-24 197.3 21.5 207 98-334 79-304 (622)
91 2o6s_A Variable lymphocyte rec 99.8 1.1E-20 3.8E-25 175.5 13.6 162 123-337 27-188 (208)
92 4glp_A Monocyte differentiatio 99.8 1E-20 3.5E-25 187.1 14.1 225 125-371 65-307 (310)
93 4ay9_X Follicle-stimulating ho 99.8 4.8E-20 1.6E-24 185.5 17.5 237 83-325 9-257 (350)
94 2o6s_A Variable lymphocyte rec 99.8 6.8E-20 2.3E-24 170.2 15.7 182 81-315 5-190 (208)
95 4ay9_X Follicle-stimulating ho 99.8 7.6E-20 2.6E-24 184.1 14.4 237 103-349 12-257 (350)
96 1h6t_A Internalin B; cell adhe 99.8 2.9E-20 9.8E-25 182.2 10.5 173 121-329 43-215 (291)
97 3cvr_A Invasion plasmid antige 99.8 2.8E-19 9.5E-24 190.0 17.7 187 124-336 59-252 (571)
98 1m9s_A Internalin B; cell inva 99.8 6.6E-20 2.3E-24 196.8 12.3 192 101-330 22-213 (605)
99 3e6j_A Variable lymphocyte rec 99.8 8.3E-19 2.9E-23 165.5 17.5 164 75-305 11-174 (229)
100 2xot_A Amphoterin-induced prot 99.8 5.2E-19 1.8E-23 178.7 14.9 176 103-303 21-202 (361)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 7.8E-19 2.7E-23 164.6 14.8 151 175-327 14-166 (220)
102 1dce_A Protein (RAB geranylger 99.8 9.2E-22 3.2E-26 209.9 -6.1 204 121-345 346-567 (567)
103 2v9t_B SLIT homolog 2 protein 99.8 9.1E-19 3.1E-23 164.1 14.9 134 219-352 33-166 (220)
104 2xot_A Amphoterin-induced prot 99.8 3.1E-19 1.1E-23 180.3 11.0 174 151-327 21-202 (361)
105 1h6t_A Internalin B; cell adhe 99.8 8.6E-19 3E-23 171.6 12.4 193 126-356 26-218 (291)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 3.7E-18 1.3E-22 160.0 15.9 153 127-305 14-168 (220)
107 2v9t_B SLIT homolog 2 protein 99.8 3E-18 1E-22 160.6 14.4 152 151-328 14-166 (220)
108 3e6j_A Variable lymphocyte rec 99.8 6.5E-18 2.2E-22 159.3 16.4 135 218-353 40-174 (229)
109 1m9s_A Internalin B; cell inva 99.8 3.2E-18 1.1E-22 183.7 15.4 172 97-280 40-211 (605)
110 1xeu_A Internalin C; cellular 99.8 6.6E-19 2.3E-23 169.8 8.4 171 98-305 17-187 (263)
111 4b8c_D Glucose-repressible alc 99.7 3E-19 1E-23 196.2 3.7 188 82-308 162-359 (727)
112 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.5E-22 153.4 13.8 105 220-328 90-195 (197)
113 1xeu_A Internalin C; cellular 99.7 4.6E-18 1.6E-22 163.8 9.4 171 146-329 17-187 (263)
114 3ogk_B Coronatine-insensitive 99.7 6.7E-20 2.3E-24 197.5 -4.8 139 218-356 378-531 (592)
115 4ezg_A Putative uncharacterize 99.7 2E-17 7E-22 152.1 11.5 154 169-352 41-195 (197)
116 1dce_A Protein (RAB geranylger 99.7 1.1E-19 3.7E-24 193.9 -4.6 190 145-356 346-551 (567)
117 3ogk_B Coronatine-insensitive 99.7 2.4E-19 8.2E-24 193.2 -4.9 112 240-351 376-501 (592)
118 1w8a_A SLIT protein; signaling 99.7 4.7E-17 1.6E-21 149.0 10.4 111 219-329 30-141 (192)
119 1w8a_A SLIT protein; signaling 99.7 1.7E-16 5.9E-21 145.3 12.8 131 220-353 10-141 (192)
120 2ell_A Acidic leucine-rich nuc 99.7 6.9E-17 2.4E-21 144.4 9.5 136 218-355 24-164 (168)
121 2wfh_A SLIT homolog 2 protein 99.7 9.2E-16 3.1E-20 140.5 13.8 128 221-352 13-140 (193)
122 3sb4_A Hypothetical leucine ri 99.7 5.7E-17 2E-21 161.5 6.2 102 241-344 225-327 (329)
123 4b8c_D Glucose-repressible alc 99.7 2.4E-17 8.3E-22 181.1 3.5 195 101-327 192-404 (727)
124 4fdw_A Leucine rich hypothetic 99.6 3.7E-15 1.3E-19 152.1 18.8 242 100-354 113-361 (401)
125 2je0_A Acidic leucine-rich nuc 99.6 2E-16 6.7E-21 138.5 7.8 128 218-347 17-149 (149)
126 2ell_A Acidic leucine-rich nuc 99.6 9.1E-16 3.1E-20 137.1 12.1 93 237-329 66-162 (168)
127 2o6r_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 134.8 15.1 131 220-353 9-139 (177)
128 2o6r_A Variable lymphocyte rec 99.6 5.3E-15 1.8E-19 133.3 13.7 111 219-329 29-139 (177)
129 4fdw_A Leucine rich hypothetic 99.6 2.8E-14 9.4E-19 145.6 19.8 245 95-351 131-383 (401)
130 2wfh_A SLIT homolog 2 protein 99.6 4.8E-15 1.6E-19 135.7 12.2 109 219-328 32-140 (193)
131 2p1m_B Transport inhibitor res 99.6 3.1E-17 1.1E-21 176.7 -3.9 89 262-351 428-519 (594)
132 2p1m_B Transport inhibitor res 99.6 1.5E-17 5E-22 179.2 -6.5 252 98-351 182-494 (594)
133 2je0_A Acidic leucine-rich nuc 99.6 3.5E-15 1.2E-19 130.5 8.8 104 218-323 42-149 (149)
134 3sb4_A Hypothetical leucine ri 99.5 2.1E-14 7E-19 143.0 10.2 196 123-321 100-328 (329)
135 1a9n_A U2A', U2A'; complex (nu 99.5 9.2E-15 3.1E-19 131.7 6.9 130 218-351 19-153 (176)
136 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 123.9 12.1 106 220-328 11-116 (170)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2.6E-14 9E-19 128.6 7.6 136 167-328 14-154 (176)
138 1ds9_A Outer arm dynein; leuci 99.5 1.5E-16 5E-21 146.5 -7.7 61 123-185 17-83 (198)
139 3g39_A Variable lymphocyte rec 99.5 1.9E-13 6.5E-18 122.3 12.3 108 244-354 11-118 (170)
140 2r9u_A Variable lymphocyte rec 99.5 1.8E-13 6.2E-18 122.9 12.1 105 221-328 15-119 (174)
141 2r9u_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 120.6 12.4 108 244-354 14-121 (174)
142 1ds9_A Outer arm dynein; leuci 99.4 1.9E-15 6.5E-20 139.0 -6.5 127 218-351 48-185 (198)
143 3un9_A NLR family member X1; l 99.4 2.3E-14 7.9E-19 144.8 -3.2 168 124-310 72-259 (372)
144 2ifg_A High affinity nerve gro 99.3 7.4E-12 2.5E-16 125.3 11.0 105 221-328 11-117 (347)
145 3un9_A NLR family member X1; l 99.3 2.4E-13 8.3E-18 137.3 -0.7 183 148-351 72-283 (372)
146 2ifg_A High affinity nerve gro 99.3 1.3E-11 4.4E-16 123.6 11.0 101 200-303 13-116 (347)
147 4gt6_A Cell surface protein; l 99.2 2.5E-10 8.6E-15 116.3 17.6 111 236-350 259-369 (394)
148 4fs7_A Uncharacterized protein 99.2 5E-10 1.7E-14 114.0 19.7 249 88-346 59-374 (394)
149 4fs7_A Uncharacterized protein 99.1 6.1E-10 2.1E-14 113.4 15.5 103 236-343 291-393 (394)
150 4gt6_A Cell surface protein; l 99.1 3E-09 1E-13 108.2 17.5 248 96-354 59-349 (394)
151 4h09_A Hypothetical leucine ri 99.0 1.5E-08 5.3E-13 102.3 20.1 130 219-353 218-347 (379)
152 2ra8_A Uncharacterized protein 99.0 4.6E-10 1.6E-14 112.4 6.6 204 99-325 106-341 (362)
153 4h09_A Hypothetical leucine ri 98.8 1.1E-07 3.9E-12 95.9 18.5 116 235-354 210-325 (379)
154 2ra8_A Uncharacterized protein 98.8 2.2E-09 7.4E-14 107.5 3.6 131 217-349 192-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 7.4E-09 2.5E-13 93.5 2.1 109 219-327 37-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 4.5E-09 1.5E-13 95.0 -0.0 116 236-351 30-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 3.2E-08 1.1E-12 94.2 -2.7 79 240-320 168-257 (267)
158 3rw6_A Nuclear RNA export fact 98.3 7.7E-07 2.6E-11 84.6 5.6 63 264-328 168-234 (267)
159 3e4g_A ATP synthase subunit S, 98.1 1.9E-06 6.7E-11 76.1 3.9 82 243-324 62-149 (176)
160 3e4g_A ATP synthase subunit S, 98.0 2.6E-06 9E-11 75.2 3.2 84 100-183 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 5.5E-06 1.9E-10 74.6 3.6 109 218-326 41-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 5.9E-06 2E-10 74.4 2.5 114 238-351 37-170 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0016 5.6E-08 54.4 6.5 36 267-302 32-67 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.002 6.8E-08 53.9 4.9 58 269-328 11-69 (130)
165 2w7z_A EFSQNR, pentapeptide re 80.6 4.5 0.00015 36.2 7.7 13 173-185 91-103 (214)
166 2lz0_A Uncharacterized protein 73.4 7.9 0.00027 30.0 6.2 45 113-158 9-53 (100)
167 2lz0_A Uncharacterized protein 69.2 13 0.00044 28.7 6.6 46 230-276 8-53 (100)
168 2w7z_A EFSQNR, pentapeptide re 67.1 15 0.0005 32.7 7.5 33 149-185 91-123 (214)
169 3du1_X ALL3740 protein, HETL; 56.7 22 0.00074 32.5 6.8 6 107-112 52-57 (257)
170 2xt2_A ALBG, MCBG-like protein 52.0 27 0.00092 30.4 6.4 12 244-255 97-108 (200)
171 2xt2_A ALBG, MCBG-like protein 44.7 50 0.0017 28.5 7.0 12 150-161 71-82 (200)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.6e-37 Score=307.01 Aligned_cols=274 Identities=22% Similarity=0.366 Sum_probs=246.5
Q ss_pred CCCCC-CCCCcc--ccceeeCCCCCCCCcceEEEEEcCCCCcCC--CCccccCCCCCCCEEEccC-CcccccccccccCC
Q 045837 74 QGNWV-GTDVCS--YYGVFCAPAPDNSNITVVAGIDLNGNDIAG--YFPAELGWLSDLALFHVNS-NRFCGIIPESLSNW 147 (527)
Q Consensus 74 ~~~w~-~~~~c~--~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l 147 (527)
+.+|. +.++|. |.||.|... ....+|++|+|++|.+.+ .++..|.++++|++|+|++ |++.+.++..|.++
T Consensus 24 l~~W~~~~~~C~~~w~gv~C~~~---~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l 100 (313)
T 1ogq_A 24 LSSWLPTTDCCNRTWLGVLCDTD---TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100 (313)
T ss_dssp GTTCCTTSCTTTTCSTTEEECCS---SSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC
T ss_pred ccCCCCCCCCCcCCCcceEeCCC---CCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC
Confidence 45785 567898 999999642 123689999999999998 8899999999999999995 99999999999999
Q ss_pred CCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc-cccchhhccccccccccccccCCC--CcceEe
Q 045837 148 KLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGES--TVSVVT 224 (527)
Q Consensus 148 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~--~L~~L~ 224 (527)
.+|++|+|++|++++.++..|.++.+|++|+|++|.+++.++..+.. .+|++|+|++|++++.++..++.. +|++|+
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 99999999999999999999999999999999999999888887766 799999999999998888777653 699999
Q ss_pred ccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC
Q 045837 225 FAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG 304 (527)
Q Consensus 225 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 304 (527)
+++|++.+.++..|..+. |++|+|++|.+++..+..|..+++|++|+|++|++++.++. +..+.+|++|+|++|+|++
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence 999999999999999987 99999999999989999999999999999999999977665 7888999999999999999
Q ss_pred cchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCC-CCCC
Q 045837 305 YVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNC-LAQR 353 (527)
Q Consensus 305 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~ 353 (527)
.++..+..+++|++|+|++|++++.++.. ..+.+|+.+++++|. +++.
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 99999999999999999999999888875 788999999999886 5543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-34 Score=318.67 Aligned_cols=276 Identities=25% Similarity=0.379 Sum_probs=246.6
Q ss_pred cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEe
Q 045837 99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLD 178 (527)
Q Consensus 99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 178 (527)
+.+|+.|+|++|.+.+.++..+.++++|++|+|++|++.+.++..|.++.+|++|+|++|++.+.++..+..+.+|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 56789999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcchhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837 179 LRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG 256 (527)
Q Consensus 179 Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 256 (527)
|++|.+++.++..+.. .+|++|+|++|++++.++..++. .+|++|+|++|++.+.++..++++.+|++|+|++|.+.|
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 9999999888887776 68999999999999988888765 569999999999999999999999999999999999887
Q ss_pred CChhhc----------------------------------------------------------------------cCCC
Q 045837 257 CLPSEI----------------------------------------------------------------------GWLK 266 (527)
Q Consensus 257 ~~p~~~----------------------------------------------------------------------~~l~ 266 (527)
.+|..+ +.+.
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 766543 3356
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCC
Q 045837 267 KLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDT 346 (527)
Q Consensus 267 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 346 (527)
+|++|||++|+++|.+|..++.+.+|+.|+|++|+++|.++..++++++|++|||++|+++|.++..+.++.+|++||++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC---CCCCCcccccccCCCCCCC
Q 045837 347 SNCLAQRPS---QKWATTCSPVVSNPVDCSK 374 (527)
Q Consensus 347 ~N~l~~~~~---~~~~~~~~~~~~np~~C~~ 374 (527)
+|.|++... ++.......+.+|+..|+.
T Consensus 713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp SSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred CCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 999996542 2333344567899999975
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-32 Score=286.35 Aligned_cols=279 Identities=19% Similarity=0.238 Sum_probs=186.1
Q ss_pred CCCcceEEEEEcCCCCcCCCC-ccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcc--cccCC
Q 045837 96 NSNITVVAGIDLNGNDIAGYF-PAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNV--CLSWT 172 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~ 172 (527)
+.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|++.+..+..|.++.+|++|+|++|++++..+.. |..+.
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 445556666666666554333 334556666666666666666555556666666666666666665433222 55566
Q ss_pred cccEEecccCCCCCCcchhhh-c-cccchhhccccccccccccccCC---------------------------------
Q 045837 173 SLRYLDLRYNNFEGEVPRELF-K-MKLDAIFLNNNRFSSWIPETIGE--------------------------------- 217 (527)
Q Consensus 173 ~L~~L~Ls~n~i~~~~p~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~--------------------------------- 217 (527)
+|++|+|++|.+++..+..++ . .+|++|++++|++.+.....+..
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence 666666666666644444322 2 46666666666665544433221
Q ss_pred --CCcceEeccCCcCCccCCCCC-------------------------------------C--CCCCCcEEEcccCCCCC
Q 045837 218 --STVSVVTFAHNNFSGCVPRSI-------------------------------------G--NMPNVNEIILSNNDLMG 256 (527)
Q Consensus 218 --~~L~~L~L~~n~l~~~~~~~l-------------------------------------~--~l~~L~~L~Ls~N~l~~ 256 (527)
.+|++|++++|++.+..+..+ . ...+|++|++++|.+.+
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence 235555555554433111100 0 11467777777777776
Q ss_pred CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCC
Q 045837 257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG 336 (527)
Q Consensus 257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (527)
..+..++.+++|++|+|++|++++..+..|.++.+|++|+|++|++++..+..+.++.+|++|+|++|++++..+..|.+
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 67777888899999999999998887888888999999999999998888888889999999999999998888888889
Q ss_pred CCCCceecCCCCCCCCCCCCCCC----CcccccccCCCCCCC
Q 045837 337 SKEGGVFDDTSNCLAQRPSQKWA----TTCSPVVSNPVDCSK 374 (527)
Q Consensus 337 l~~L~~L~l~~N~l~~~~~~~~~----~~~~~~~~np~~C~~ 374 (527)
+.+|++|++++|.|++++...+. -....+.+|++.|+.
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 99999999999999987754332 234456788888864
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-33 Score=306.28 Aligned_cols=270 Identities=19% Similarity=0.291 Sum_probs=210.3
Q ss_pred CCCCC-CCCCccc---cceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcc-------------
Q 045837 74 QGNWV-GTDVCSY---YGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRF------------- 136 (527)
Q Consensus 74 ~~~w~-~~~~c~~---~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i------------- 136 (527)
..+|. +.++|.| .||.|+.. .+|+.|+|+++++.|.++..|+++++|++|+|++|++
T Consensus 57 ~~~W~~~~~~c~w~~~~GV~C~~~------~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~ 130 (636)
T 4eco_A 57 GANWNFNKELDMWGAQPGVSLNSN------GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGIS 130 (636)
T ss_dssp -CCCCCSSCGGGTTCCTTEEECTT------CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBC
T ss_pred CCCCCCCCCcccccCCCCeEEcCC------CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccc
Confidence 34785 6789999 99999632 5899999999999999999999999999999988843
Q ss_pred -----------------------------------------------------------------cccccccccCCCCCc
Q 045837 137 -----------------------------------------------------------------CGIIPESLSNWKLIY 151 (527)
Q Consensus 137 -----------------------------------------------------------------~~~~~~~~~~l~~L~ 151 (527)
++ ++..|+++++|+
T Consensus 131 ~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~ 209 (636)
T 4eco_A 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR 209 (636)
T ss_dssp TTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCC
T ss_pred cCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCC
Confidence 34 677788899999
Q ss_pred EEEeecCcCccc-----------------CCcccc--cCCcccEEecccCCCCCCcchhhhc-cccchhhccccc-ccc-
Q 045837 152 EFDVSNNRLVGS-----------------FPNVCL--SWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNR-FSS- 209 (527)
Q Consensus 152 ~L~Ls~n~l~~~-----------------~~~~~~--~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~-l~~- 209 (527)
+|+|++|++++. ++..+. ++.+|++|+|++|.+.+.++..+.. .+|++|+|++|+ +++
T Consensus 210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~ 289 (636)
T 4eco_A 210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289 (636)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc
Confidence 999999999875 888888 8999999999999988888887776 689999999998 887
Q ss_pred ccccccCC-------CCcceEeccCCcCCccCCC--CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccc
Q 045837 210 WIPETIGE-------STVSVVTFAHNNFSGCVPR--SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG 280 (527)
Q Consensus 210 ~~~~~~~~-------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 280 (527)
.++..++. .+|++|++++|++. .++. .|+++.+|++|+|++|.++|.++ .++.+++|++|+|++|+++
T Consensus 290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~- 366 (636)
T 4eco_A 290 QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT- 366 (636)
T ss_dssp HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-
T ss_pred cchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-
Confidence 66666654 57888888888888 6777 78888888888888888887777 7777777777777777777
Q ss_pred cCCcccCCCCC-CcEEeccCCCCCCcchhhhhCCC--CCcEEEecCcccCCCCCCCCC-------CCCCCceecCCCCCC
Q 045837 281 SVPQSFSSLES-IHRLVLSYNQLTGYVSEQICKLP--NINNFTFSYNYFQGLGNECIP-------GSKEGGVFDDTSNCL 350 (527)
Q Consensus 281 ~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~l~~N~l 350 (527)
.++..+..+.+ |++|+|++|+++ .++..+..+. +|++|++++|++++..+..+. .+.+|+.|++++|.|
T Consensus 367 ~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l 445 (636)
T 4eco_A 367 EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445 (636)
T ss_dssp ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence 66666777777 777777777777 4455555433 677777777777666665555 555666666666666
Q ss_pred CCCC
Q 045837 351 AQRP 354 (527)
Q Consensus 351 ~~~~ 354 (527)
+.++
T Consensus 446 ~~lp 449 (636)
T 4eco_A 446 SKFP 449 (636)
T ss_dssp CSCC
T ss_pred CcCC
Confidence 6544
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=3.9e-32 Score=283.90 Aligned_cols=260 Identities=14% Similarity=0.196 Sum_probs=225.5
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccccc--ccCCCCCcEEEeecCcCcccCCcc-cccCC
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPES--LSNWKLIYEFDVSNNRLVGSFPNV-CLSWT 172 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~ 172 (527)
+..+++|++|+|++|.+.+..+..|.++++|++|+|++|++.+.++.. |.++.+|++|+|++|++++..+.. +.++.
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 677889999999999998888888999999999999999998754444 888999999999999998776665 78899
Q ss_pred cccEEecccCCCCCCcchhhhc-----------------------------------cccchhhcccccccccccccc--
Q 045837 173 SLRYLDLRYNNFEGEVPRELFK-----------------------------------MKLDAIFLNNNRFSSWIPETI-- 215 (527)
Q Consensus 173 ~L~~L~Ls~n~i~~~~p~~~~~-----------------------------------~~L~~L~L~~n~l~~~~~~~~-- 215 (527)
+|++|+|++|.+++..+..+.. .+|++|++++|++++..+..+
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 9999999999988655544322 468888888887765332211
Q ss_pred --------------------------------------CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837 216 --------------------------------------GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC 257 (527)
Q Consensus 216 --------------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 257 (527)
...+|++|++++|++.+..+..|+.+.+|++|+|++|.+++.
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 114699999999999999899999999999999999999988
Q ss_pred ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837 258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS 337 (527)
Q Consensus 258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (527)
.+..|.++.+|++|+|++|++++..+..|.++.+|++|+|++|+|++..+..+.++++|++|+|++|+++++....+..+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 88899999999999999999998888899999999999999999999889999999999999999999999888888999
Q ss_pred CCCceecCCCCCCCCCCC
Q 045837 338 KEGGVFDDTSNCLAQRPS 355 (527)
Q Consensus 338 ~~L~~L~l~~N~l~~~~~ 355 (527)
.+|+.|++++|.|++...
T Consensus 395 ~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCBCCCTT
T ss_pred CcccEEEccCCCcccCCC
Confidence 999999999999986543
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=282.10 Aligned_cols=259 Identities=15% Similarity=0.153 Sum_probs=133.2
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 175 (527)
+..+++|++|+|++|.+.+..+..|.++++|++|+|++|+|.++....|.++.+|++|+|++|++.+..+..|.++.+|+
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 44455555555555555555455555555555555555555544444455555555555555555555455555555555
Q ss_pred EEecccCCCCCCcchhhhc-cccchhhccccccccccccccC-CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCC
Q 045837 176 YLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNND 253 (527)
Q Consensus 176 ~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 253 (527)
+|+|++|.+++..+..+.. .+|++|+|++|++++.....+. ..+|++|+|++|.+.+.....|..+.+|++|++++|.
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 5555555554332322322 3555555555555544333332 2345555555555555444445555555555555554
Q ss_pred CCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCC
Q 045837 254 LMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNEC 333 (527)
Q Consensus 254 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 333 (527)
+.+.++..+....+|++|+|++|++++.....|..+.+|++|+|++|.|++.....|.++.+|++|+|++|+++++.+..
T Consensus 212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred cccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence 44343333333345555555555554322234455555555555555555544444555555555555555555555555
Q ss_pred CCCCCCCceecCCCCCCCCCC
Q 045837 334 IPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 334 ~~~l~~L~~L~l~~N~l~~~~ 354 (527)
|.++.+|+.|++++|.|++++
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~ 312 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLE 312 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCC
T ss_pred hcCcccCCEEECCCCcCceeC
Confidence 555555555555555555444
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.2e-31 Score=298.08 Aligned_cols=254 Identities=29% Similarity=0.465 Sum_probs=220.0
Q ss_pred eEEEEEcCCCCcCCCCccccCC--CCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEe
Q 045837 101 VVAGIDLNGNDIAGYFPAELGW--LSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLD 178 (527)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 178 (527)
+|+.|+|++|.+.+.++..+.. +++|++|+|++|++++.++..|.++.+|++|+|++|++++.++..|..+.+|++|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 4445555555554444444444 66788888888888888888899999999999999999988899999999999999
Q ss_pred cccCCCCCCcchhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837 179 LRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG 256 (527)
Q Consensus 179 Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 256 (527)
|++|.+++.++..+.. .+|++|+|++|++++.++..++. .+|++|+|++|++.+.++..|+.+.+|++|+|++|.+++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 9999999888887766 68999999999999888877764 569999999999999999999999999999999999999
Q ss_pred CChhhccCCCCCCEEEccCCcccccCCccc--------------------------------------------------
Q 045837 257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSF-------------------------------------------------- 286 (527)
Q Consensus 257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-------------------------------------------------- 286 (527)
.++..++++++|++|||++|.++|.+|..+
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 999999999999999999999987776543
Q ss_pred --------------------CCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCC
Q 045837 287 --------------------SSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDT 346 (527)
Q Consensus 287 --------------------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 346 (527)
..+.+|+.|||++|+++|.++..++++.+|++|+|++|+++|.++..+.++.+|+.||++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 335678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 045837 347 SNCLAQRP 354 (527)
Q Consensus 347 ~N~l~~~~ 354 (527)
+|.+++..
T Consensus 689 ~N~l~g~i 696 (768)
T 3rgz_A 689 SNKLDGRI 696 (768)
T ss_dssp SSCCEECC
T ss_pred CCcccCcC
Confidence 99999654
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.4e-31 Score=292.38 Aligned_cols=258 Identities=18% Similarity=0.234 Sum_probs=200.8
Q ss_pred cceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEc-cCCccccc-------------------------
Q 045837 86 YGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHV-NSNRFCGI------------------------- 139 (527)
Q Consensus 86 ~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-s~n~i~~~------------------------- 139 (527)
.||.|+. -.+|+.|+|+++++.|.++..|+++++|++|+| ++|.+.|.
T Consensus 315 ~GV~C~~------~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~ 388 (876)
T 4ecn_A 315 PGVDLDN------NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388 (876)
T ss_dssp TTEEECT------TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHH
T ss_pred CceEecC------CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhh
Confidence 9999963 268999999999999999999999999999999 77654433
Q ss_pred ---------------------------------------------------ccccccCCCCCcEEEeecCcCcc------
Q 045837 140 ---------------------------------------------------IPESLSNWKLIYEFDVSNNRLVG------ 162 (527)
Q Consensus 140 ---------------------------------------------------~~~~~~~l~~L~~L~Ls~n~l~~------ 162 (527)
++..|+++.+|++|+|++|++++
T Consensus 389 ~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~ 468 (876)
T 4ecn_A 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD 468 (876)
T ss_dssp HHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSS
T ss_pred hhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccc
Confidence 67778899999999999999987
Q ss_pred -----------cCCcccc--cCCcccEEecccCCCCCCcchhhhc-cccchhhccccc-ccc-ccccccCC--------C
Q 045837 163 -----------SFPNVCL--SWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNR-FSS-WIPETIGE--------S 218 (527)
Q Consensus 163 -----------~~~~~~~--~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~-l~~-~~~~~~~~--------~ 218 (527)
.++..+. ++.+|++|+|++|.+.+.++..+.. .+|++|+|++|+ +++ .++..++. .
T Consensus 469 ~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~ 548 (876)
T 4ecn_A 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548 (876)
T ss_dssp CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTT
T ss_pred ccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccC
Confidence 3788877 8999999999999988888877776 689999999998 877 56554432 3
Q ss_pred CcceEeccCCcCCccCCC--CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCC-CcEE
Q 045837 219 TVSVVTFAHNNFSGCVPR--SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLES-IHRL 295 (527)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L 295 (527)
+|++|+|++|++. .++. .|+++.+|++|+|++|.++ .++ .|+.+.+|++|+|++|+++ .++..+..+.+ |++|
T Consensus 549 ~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp TCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred CccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence 6899999999888 7777 7888888999999998888 777 7888888888888888888 77777888887 8888
Q ss_pred eccCCCCCCcchhhhhCCCC--CcEEEecCcccCCCCCCCC---C--CCCCCceecCCCCCCCCCC
Q 045837 296 VLSYNQLTGYVSEQICKLPN--INNFTFSYNYFQGLGNECI---P--GSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 296 ~Ls~N~l~~~~~~~l~~l~~--L~~L~Ls~N~l~~~~~~~~---~--~l~~L~~L~l~~N~l~~~~ 354 (527)
+|++|.|+ .++..+..+.. |++|+|++|++.+.++... . .+.+|+.|++++|.|+.++
T Consensus 625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp 689 (876)
T 4ecn_A 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689 (876)
T ss_dssp ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC
T ss_pred ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC
Confidence 88888887 45565555443 7777777777766544221 1 2224555555555555443
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=6.8e-31 Score=262.43 Aligned_cols=258 Identities=17% Similarity=0.213 Sum_probs=214.4
Q ss_pred CCCCccccceeeCCCC---CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEe
Q 045837 79 GTDVCSYYGVFCAPAP---DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDV 155 (527)
Q Consensus 79 ~~~~c~~~gv~c~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 155 (527)
..++|.|.|+.|.... ......+|+.|+|++|.+. .++..+.++++|++|+|++|+|. .++..|+++.+|++|+|
T Consensus 57 ~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L 134 (328)
T 4fcg_A 57 NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134 (328)
T ss_dssp CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEE
T ss_pred cccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEEC
Confidence 5688999999984210 0123468999999999998 46778888999999999999999 78888999999999999
Q ss_pred ecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCC
Q 045837 156 SNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVP 235 (527)
Q Consensus 156 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 235 (527)
++|+++ .++..+.++.+|++|+|++|++.+.++..+.... +.+ ..-+..+|++|+|++|++. .++
T Consensus 135 s~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~----------~~~---~~~~l~~L~~L~L~~n~l~-~lp 199 (328)
T 4fcg_A 135 ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD----------ASG---EHQGLVNLQSLRLEWTGIR-SLP 199 (328)
T ss_dssp ESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-----------CC---CEEESTTCCEEEEEEECCC-CCC
T ss_pred CCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc----------chh---hhccCCCCCEEECcCCCcC-cch
Confidence 999999 7788899999999999999988877776554311 111 1113456888999999888 677
Q ss_pred CCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837 236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN 315 (527)
Q Consensus 236 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 315 (527)
..++++.+|++|+|++|.++ .++..++.+.+|++|+|++|++.+.++..+.++.+|++|+|++|.+.+.++..+.++++
T Consensus 200 ~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 200 ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp GGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred HhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 78889999999999999998 46667889999999999999998899989999999999999999998888988999999
Q ss_pred CcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837 316 INNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
|++|+|++|.+.+.++..+.++.+|+.+++..|.+....
T Consensus 279 L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred CCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 999999999999999999999999999999887776543
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4.4e-31 Score=262.17 Aligned_cols=249 Identities=23% Similarity=0.300 Sum_probs=224.0
Q ss_pred CCCCEEEccCCcccc--cccccccCCCCCcEEEeec-CcCcccCCcccccCCcccEEecccCCCCCCcchhhhc-cccch
Q 045837 124 SDLALFHVNSNRFCG--IIPESLSNWKLIYEFDVSN-NRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKLDA 199 (527)
Q Consensus 124 ~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~ 199 (527)
.++++|+|++|++.+ .++..|.++++|++|+|++ |++.+.++..|.++.+|++|+|++|.+++.++..+.. .+|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8899999999999999995 9999999999999999999999999999888887766 79999
Q ss_pred hhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCC-CCcEEEcccCCCCCCChhhccCCCCCCEEEccCCc
Q 045837 200 IFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMP-NVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNS 277 (527)
Q Consensus 200 L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 277 (527)
|+|++|.+++.++..++. .+|++|++++|++.+.++..++.+. +|++|+|++|.+++.++..+..+. |++|+|++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999888877754 6799999999999999999999998 999999999999999999999987 9999999999
Q ss_pred ccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCC
Q 045837 278 FYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQK 357 (527)
Q Consensus 278 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 357 (527)
+++..+..|..+.+|++|+|++|++++.++. +..+++|++|+|++|++++.++..+..+.+|++|++++|.|++.....
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999987666 788999999999999999989999999999999999999999443222
Q ss_pred ---CCCcccccccCCCCCCC
Q 045837 358 ---WATTCSPVVSNPVDCSK 374 (527)
Q Consensus 358 ---~~~~~~~~~~np~~C~~ 374 (527)
.......+.+|++.|+.
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST
T ss_pred ccccccChHHhcCCCCccCC
Confidence 22234457789999874
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=270.35 Aligned_cols=260 Identities=15% Similarity=0.079 Sum_probs=233.6
Q ss_pred CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837 95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL 174 (527)
Q Consensus 95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 174 (527)
.+.++.+|++|+|++|.+.++....|.++++|++|+|++|++.+..+..|.++.+|++|+|++|.+.+..+..|.++.+|
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence 46788999999999999998777778999999999999999999988899999999999999999998888899999999
Q ss_pred cEEecccCCCCCCcchhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837 175 RYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN 252 (527)
Q Consensus 175 ~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 252 (527)
++|+|++|.+++.....+.. .+|+.|+|++|.+.+.....+.. .+|++|++++|.+.+.++..+....+|++|+|++|
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 99999999998433333433 69999999999999877666654 56999999999988888777777779999999999
Q ss_pred CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCC
Q 045837 253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNE 332 (527)
Q Consensus 253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 332 (527)
.+++.....+..+.+|++|+|++|.+++.....|.++.+|++|+|++|++++..+..|.++++|++|+|++|+|+++...
T Consensus 235 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 99966557899999999999999999988888899999999999999999999899999999999999999999999888
Q ss_pred CCCCCCCCceecCCCCCCCCCC
Q 045837 333 CIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 333 ~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
.|..+.+|+.|++++|.+....
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp GBSCGGGCCEEECCSSCEECSG
T ss_pred HcCCCcccCEEEccCCCccCcc
Confidence 8999999999999999998543
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.4e-29 Score=274.14 Aligned_cols=277 Identities=19% Similarity=0.203 Sum_probs=217.8
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCc-ccccCCcc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPN-VCLSWTSL 174 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L 174 (527)
+..+++|++|+|++|.++. ++..+.++++|++|++++|++.+..+..+.++++|++|++++|.+.+.++. .+..+.+|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 5567788888888888773 566777888888888888888877777788888888888888887755443 47778888
Q ss_pred cEEecccCCCCCCc--chhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCC-CCCCCCCCcEEEc
Q 045837 175 RYLDLRYNNFEGEV--PRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPR-SIGNMPNVNEIIL 249 (527)
Q Consensus 175 ~~L~Ls~n~i~~~~--p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L 249 (527)
++|++++|.+++.. +..+.. .+|++|++++|++.+..+..+.. .+|++|++++|++.+..+. .+.++.+|++|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 88888888887433 333333 68888888888888776666654 5688899998888876554 3788889999999
Q ss_pred ccCCCCCCChhhccCCCCCCEEEccCCccccc---CCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCccc
Q 045837 250 SNNDLMGCLPSEIGWLKKLTVFDASSNSFYGS---VPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYF 326 (527)
Q Consensus 250 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 326 (527)
++|.+.+..+..+.++.+|++|+|++|.+++. ....+..+.+|++|+|++|++++..+..+.++++|++|+|++|++
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 99998877788888899999999999988752 235678888999999999999988888889999999999999999
Q ss_pred CCCCCCCCCCCCCCceecCCCCCCCCCCCCCC----CCcccccccCCCCCCC
Q 045837 327 QGLGNECIPGSKEGGVFDDTSNCLAQRPSQKW----ATTCSPVVSNPVDCSK 374 (527)
Q Consensus 327 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~----~~~~~~~~~np~~C~~ 374 (527)
++..+..+.++..| .|++++|.|++.+.... .-....+.+|+|.|+.
T Consensus 513 ~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 513 TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 98888888899999 99999999987764422 2244567899999864
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.2e-29 Score=272.65 Aligned_cols=158 Identities=15% Similarity=0.100 Sum_probs=130.8
Q ss_pred CCcceEeccCCcCCccCC-CCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccc-cCCcccCCCCCCcEE
Q 045837 218 STVSVVTFAHNNFSGCVP-RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG-SVPQSFSSLESIHRL 295 (527)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L 295 (527)
.+|++|++++|++.+..+ ..+..+.+|++|++++|.+.+..+..+.++++|++|+|++|++++ .++..|..+.+|++|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 345666666666665555 467777888888888888887778888889999999999999887 468889999999999
Q ss_pred eccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC----CcccccccCCCC
Q 045837 296 VLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA----TTCSPVVSNPVD 371 (527)
Q Consensus 296 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~~~~~~~~np~~ 371 (527)
+|++|++++..+..+.++++|++|++++|++++..+..+.++.+|+.|++++|.|+.++..... -....+.+|+|.
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence 9999999998888999999999999999999999888999999999999999999988765322 234567899999
Q ss_pred CCCc
Q 045837 372 CSKD 375 (527)
Q Consensus 372 C~~~ 375 (527)
|+..
T Consensus 559 c~c~ 562 (606)
T 3vq2_A 559 CICE 562 (606)
T ss_dssp CSST
T ss_pred cCCc
Confidence 9753
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=5.5e-29 Score=267.15 Aligned_cols=153 Identities=23% Similarity=0.276 Sum_probs=120.0
Q ss_pred CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC--ChhhccCCCCCCEEEccCCcccccCCc-ccCCCCCCcE
Q 045837 218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC--LPSEIGWLKKLTVFDASSNSFYGSVPQ-SFSSLESIHR 294 (527)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~ 294 (527)
.+|++|++++|++.+..+..++++.+|++|+|++|.+++. ++..+.++.+|++|+|++|++++.++. .+..+.+|++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 4588888888888887778888888889999988888853 345678888899999999988874544 4778888999
Q ss_pred EeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC----CcccccccCCC
Q 045837 295 LVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA----TTCSPVVSNPV 370 (527)
Q Consensus 295 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~~~~~~~~np~ 370 (527)
|+|++|++++.++..+. .+|++|++++|+|+.+ +..+.++.+|++|++++|.|+.++..... -....+.+|+|
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 99999988876554443 6899999999999865 44455899999999999999988765222 23345789999
Q ss_pred CCC
Q 045837 371 DCS 373 (527)
Q Consensus 371 ~C~ 373 (527)
.|+
T Consensus 510 ~c~ 512 (562)
T 3a79_B 510 DCT 512 (562)
T ss_dssp CCC
T ss_pred CCC
Confidence 997
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.2e-28 Score=246.51 Aligned_cols=264 Identities=18% Similarity=0.182 Sum_probs=145.9
Q ss_pred CCccccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEee
Q 045837 81 DVCSYYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVS 156 (527)
Q Consensus 81 ~~c~~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 156 (527)
..|+|..+.|..... .....+++.|+|++|.+++.....|.++++|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 345566665543210 1122456666666666666555556666666666666666666556666666666666666
Q ss_pred cCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc-cccchhhcccccccc--ccccccC-CCCcceEeccCCcCCc
Q 045837 157 NNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSS--WIPETIG-ESTVSVVTFAHNNFSG 232 (527)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~--~~~~~~~-~~~L~~L~L~~n~l~~ 232 (527)
+|+++ .++..+. .+|++|++++|.+++.....+.. .+|++|++++|.+.. .....+. ..+|++|++++|++..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 66665 3333332 56666666666665332222222 466666666666542 2222232 2346666666666553
Q ss_pred cCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhC
Q 045837 233 CVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICK 312 (527)
Q Consensus 233 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 312 (527)
++..+. .+|++|++++|.+++..+..+..+.+|++|+|++|.+++..+..+..+.+|++|+|++|+|+ .++..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 222222 45666666666666555555666666666666666666555455556666666666666665 34445556
Q ss_pred CCCCcEEEecCcccCCCCCCCCCC------CCCCceecCCCCCCC
Q 045837 313 LPNINNFTFSYNYFQGLGNECIPG------SKEGGVFDDTSNCLA 351 (527)
Q Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~ 351 (527)
+++|++|++++|+|+++....|.. ...++.|++++|.+.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 666666666666666555444432 244555666666554
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=254.70 Aligned_cols=255 Identities=15% Similarity=0.160 Sum_probs=215.0
Q ss_pred cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEe
Q 045837 99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLD 178 (527)
Q Consensus 99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 178 (527)
..+|++|+|++|++++.....|.++++|++|+|++|+|++..+..|.++.+|++|+|++|++++.....|.++.+|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 35899999999999987777899999999999999999988888899999999999999999966555688999999999
Q ss_pred cccCCCCCCcch--hhhc-cccchhhccccc-cccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCC
Q 045837 179 LRYNNFEGEVPR--ELFK-MKLDAIFLNNNR-FSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNND 253 (527)
Q Consensus 179 Ls~n~i~~~~p~--~~~~-~~L~~L~L~~n~-l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~ 253 (527)
|++|.++ .++. .+.. .+|++|++++|. +.......++. .+|++|++++|++.+..+..|..+.+|++|++++|.
T Consensus 131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 9999998 5655 3333 799999999994 66655555544 569999999999999889999999999999999999
Q ss_pred CCCCChhhccCCCCCCEEEccCCcccccCCccc---CCCCCCcEEeccCCCCCCc----chhhhhCCCCCcEEEecCccc
Q 045837 254 LMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSF---SSLESIHRLVLSYNQLTGY----VSEQICKLPNINNFTFSYNYF 326 (527)
Q Consensus 254 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l 326 (527)
++......+..+.+|++|+|++|.+++.....+ .....++.++|+++.+++. ++..+.++++|++|++++|++
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 974333345568999999999999986554433 2456789999999999863 567789999999999999999
Q ss_pred CCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837 327 QGLGNECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 327 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
+++....|..+.+|++|++++|.+++..
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 9876666789999999999999998654
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.9e-28 Score=243.66 Aligned_cols=263 Identities=17% Similarity=0.249 Sum_probs=225.9
Q ss_pred eEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecc
Q 045837 101 VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLR 180 (527)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 180 (527)
+++.++++++.+.. ++..+. .+|++|+|++|+|++.....|.++.+|++|+|++|++++..+..|.++.+|++|+|+
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 67899999999876 444443 689999999999998888789999999999999999998888999999999999999
Q ss_pred cCCCCCCcchhhhccccchhhccccccccccccccC-CCCcceEeccCCcCCc--cCCCCCCCCCCCcEEEcccCCCCCC
Q 045837 181 YNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSG--CVPRSIGNMPNVNEIILSNNDLMGC 257 (527)
Q Consensus 181 ~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~ 257 (527)
+|.++ .++..++ .+|++|++++|++++.....+. ..+|++|++++|.+.. .....|.++.+|++|++++|.++ .
T Consensus 109 ~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185 (330)
T ss_dssp SSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred CCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence 99998 6776655 7999999999999987766554 4679999999999974 56678899999999999999998 5
Q ss_pred ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837 258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS 337 (527)
Q Consensus 258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (527)
++..+. .+|++|+|++|++++..+..|..+.+|++|+|++|.+++.....+..+++|++|++++|+++. ++..+..+
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l 262 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADH 262 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTC
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChhhccC
Confidence 555443 899999999999998888899999999999999999998888889999999999999999995 46678899
Q ss_pred CCCceecCCCCCCCCCCCCCCCC----------cccccccCCCCC
Q 045837 338 KEGGVFDDTSNCLAQRPSQKWAT----------TCSPVVSNPVDC 372 (527)
Q Consensus 338 ~~L~~L~l~~N~l~~~~~~~~~~----------~~~~~~~np~~C 372 (527)
.+|++|++++|.|++++...+.. ....+.+|++.+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 99999999999999887554421 123456788765
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.2e-28 Score=270.45 Aligned_cols=280 Identities=15% Similarity=0.193 Sum_probs=221.3
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccc--cccccccCC--CCCcEEEeecCcCcccCCcccccC
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCG--IIPESLSNW--KLIYEFDVSNNRLVGSFPNVCLSW 171 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l 171 (527)
+..+++|+.|+|++|.+.+..+..|.++++|++|++++|.+.. .....|..+ .+|++|++++|++++..+..|..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 4456677777777777777666667777777777777775432 112223222 467778888888887777888889
Q ss_pred CcccEEecccCCCCCCcchhhhc--cccchhhccccccccccccccCC-CCcceEeccCCcCC--ccCCCCCCCCCCCcE
Q 045837 172 TSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFS--GCVPRSIGNMPNVNE 246 (527)
Q Consensus 172 ~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~ 246 (527)
.+|++|+|++|.+++.++...+. .+|++|++++|++.+.....+.. .+|++|++++|.+. +.++..|.++.+|++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 99999999999987666643333 68999999999988776666654 56999999999887 467788999999999
Q ss_pred EEcccCCCCCCChhhccCCCCCCEEEccCCcccccCC--------cccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcE
Q 045837 247 IILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP--------QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINN 318 (527)
Q Consensus 247 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 318 (527)
|+|++|.+++..+..|.++.+|++|+|++|++++... ..|.++.+|++|+|++|+|+.+....|.++.+|++
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 9999999997777789999999999999999985422 23788999999999999999776677999999999
Q ss_pred EEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCC-----CCCcccccccCCCCCCCc
Q 045837 319 FTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQK-----WATTCSPVVSNPVDCSKD 375 (527)
Q Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----~~~~~~~~~~np~~C~~~ 375 (527)
|+|++|+++++....|.++.+|+.|++++|.|++..... ..-....+.+|+|.|+..
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999999999988888999999999999999999877542 233455678999999854
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.9e-29 Score=272.49 Aligned_cols=269 Identities=16% Similarity=0.158 Sum_probs=137.6
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
.+++.|++++|.+..+....|.++++|++|+|++|.|.+..+..|+++.+|++|+|++|.+++..+..|.++.+|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34444445544444433333444444555555555444444444444445555555555444444444444444555555
Q ss_pred ccCCCCCCcchhhh-c-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCC-----------------
Q 045837 180 RYNNFEGEVPRELF-K-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIG----------------- 239 (527)
Q Consensus 180 s~n~i~~~~p~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~----------------- 239 (527)
++|.++ .++..++ . .+|++|+|++|.+++..+..++. .+|++|+|++|.+.+.....+.
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 554444 3333221 1 34444444444444444333322 2344444444444432110000
Q ss_pred --------------------CCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccC
Q 045837 240 --------------------NMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSY 299 (527)
Q Consensus 240 --------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 299 (527)
...+|++|+|++|.+++. ..+..+.+|++|+|++|.+++..+..|..+.+|++|+|++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 012455555555555532 4566667777777777777666666677777777777777
Q ss_pred CCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC-CcccccccCCCCCC
Q 045837 300 NQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA-TTCSPVVSNPVDCS 373 (527)
Q Consensus 300 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~~~~~np~~C~ 373 (527)
|.|+++ +..+..+++|++|+|++|.++++ +..+..+.+|+.|++++|.|++.+..... -....+.+|+|.|+
T Consensus 288 N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 288 NRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence 777653 44445566777777777776643 33455566677777777777655422221 12334556666664
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=7.5e-29 Score=263.55 Aligned_cols=154 Identities=22% Similarity=0.227 Sum_probs=116.1
Q ss_pred CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC--CChhhccCCCCCCEEEccCCcccccCCc-ccCCCCCCcE
Q 045837 218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG--CLPSEIGWLKKLTVFDASSNSFYGSVPQ-SFSSLESIHR 294 (527)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~ 294 (527)
.+|++|++++|++.+..+..++.+.+|++|+|++|.+++ .++..++.+++|++|+|++|.+++.++. .+..+.+|++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 357778888888887777777888888888888888875 4456677888888888888888764554 3677788888
Q ss_pred EeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC----CcccccccCCC
Q 045837 295 LVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA----TTCSPVVSNPV 370 (527)
Q Consensus 295 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~~~~~~~~np~ 370 (527)
|+|++|++++.++..+. .+|++|++++|+++.+ +..+..+.+|++|++++|.|+.++..... -....+.+|++
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECcCCCCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 88888888776655443 6889999999998854 55555889999999999999988765221 23445789999
Q ss_pred CCCC
Q 045837 371 DCSK 374 (527)
Q Consensus 371 ~C~~ 374 (527)
.|+.
T Consensus 481 ~c~c 484 (520)
T 2z7x_B 481 DCSC 484 (520)
T ss_dssp CCCH
T ss_pred cccC
Confidence 9873
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.5e-28 Score=246.10 Aligned_cols=262 Identities=18% Similarity=0.221 Sum_probs=185.6
Q ss_pred CccccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeec
Q 045837 82 VCSYYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSN 157 (527)
Q Consensus 82 ~c~~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 157 (527)
.|.|..+.|..... .....+|+.|+|++|.+.+..+..|.++++|++|+|++|+|++..+..|.++.+|++|+|++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 35676666653211 11235678888888888776666778888888888888888877777788888888888888
Q ss_pred CcCcccCCcccccCCcccEEecccCCCCCCcchh-hhc-cccchhhcccccccc--ccccccCCCCcceEeccCCcCCcc
Q 045837 158 NRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRE-LFK-MKLDAIFLNNNRFSS--WIPETIGESTVSVVTFAHNNFSGC 233 (527)
Q Consensus 158 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~-~~~-~~L~~L~L~~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~ 233 (527)
|+++ .++..+. .+|++|++++|.++ .++.. +.. .+|++|++++|.++. .....+...+|++|++++|++.+
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-
Confidence 8877 4444443 67888888888887 44433 333 578888888887753 44455555578888888888775
Q ss_pred CCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCC
Q 045837 234 VPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKL 313 (527)
Q Consensus 234 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 313 (527)
++..+. .+|++|+|++|.+++..+..+..+.+|++|+|++|++++..+..+..+.+|++|+|++|+|+ .++..+..+
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 343333 57888888888887666677777888888888888887766667777788888888888877 456667778
Q ss_pred CCCcEEEecCcccCCCCCCCCCCC------CCCceecCCCCCCC
Q 045837 314 PNINNFTFSYNYFQGLGNECIPGS------KEGGVFDDTSNCLA 351 (527)
Q Consensus 314 ~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~l~~N~l~ 351 (527)
++|++|++++|+|+++....|... ..|+.|++++|.+.
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 888888888888877766555442 45777788877765
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=3.7e-29 Score=256.10 Aligned_cols=269 Identities=16% Similarity=0.158 Sum_probs=144.4
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
.+++.|+++++.+..+....|..+++|++|+|++|+|.+.....|.++.+|++|+|++|++++..+..|.++.+|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 44555555555544433333444555555555555555444444555555555555555555444444445555555555
Q ss_pred ccCCCCCCcchhhhc--cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCC------------------
Q 045837 180 RYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSI------------------ 238 (527)
Q Consensus 180 s~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l------------------ 238 (527)
++|.++ .++..++. .+|++|++++|++.+.....++. .+|++|++++|++.+.....+
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 555554 33333221 34555555555554443333322 334444444444443210000
Q ss_pred -------------------CCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccC
Q 045837 239 -------------------GNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSY 299 (527)
Q Consensus 239 -------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 299 (527)
....+|++|++++|.+++. ..+..+.+|++|+|++|.+++..+..|..+.+|++|+|++
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 0113456666666666532 3566677777777777777766666777777777777777
Q ss_pred CCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC-CcccccccCCCCCC
Q 045837 300 NQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA-TTCSPVVSNPVDCS 373 (527)
Q Consensus 300 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~~~~~np~~C~ 373 (527)
|++++. +..+..+++|++|++++|+++++ +..+..+.+|+.|++++|.|+..+..... -....+.+|+|.|+
T Consensus 282 n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 282 NRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred CcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence 777653 34445667777777777777654 33455566777777777777766432221 22334566777765
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=8.2e-29 Score=253.55 Aligned_cols=246 Identities=17% Similarity=0.132 Sum_probs=188.8
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 175 (527)
+..+++|++|+|++|.+.+..+..|.++++|++|+|++|+|.......|.++.+|++|+|++|++.+..+..|.++.+|+
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 56677777888888777776666777777888888888877755555567777788888888877766666677777888
Q ss_pred EEecccCCCCCCcchhhhcccc-------------------chhhccccccccccccccCCCCcceEeccCCcCCccCCC
Q 045837 176 YLDLRYNNFEGEVPRELFKMKL-------------------DAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPR 236 (527)
Q Consensus 176 ~L~Ls~n~i~~~~p~~~~~~~L-------------------~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 236 (527)
+|++++|.+++. ... ...+| ++|++++|.+...... ...+|++|++++|.+.+. .
T Consensus 169 ~L~l~~n~l~~~-~~~-~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~ 242 (390)
T 3o6n_A 169 NLQLSSNRLTHV-DLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--A 242 (390)
T ss_dssp EEECCSSCCSBC-CGG-GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--G
T ss_pred EEECCCCcCCcc-ccc-cccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--H
Confidence 888888777632 211 11233 3344444444332111 124688888999888864 5
Q ss_pred CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCC
Q 045837 237 SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNI 316 (527)
Q Consensus 237 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 316 (527)
.+..+.+|++|+|++|.+++..+..|..+++|++|+|++|++++ ++..+..+++|++|+|++|++++ ++..+..+++|
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L 320 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRL 320 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTC
T ss_pred HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcC
Confidence 68899999999999999998888899999999999999999985 55667788999999999999985 46668889999
Q ss_pred cEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837 317 NNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 352 (527)
++|++++|++++.. +..+.+|+.|++++|.++.
T Consensus 321 ~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 321 ENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 99999999998873 6778899999999999984
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.6e-29 Score=273.26 Aligned_cols=255 Identities=17% Similarity=0.218 Sum_probs=179.6
Q ss_pred CCCcceEEEEEcCCCCcCCC-----------------CccccC--CCCCCCEEEccCCcccccccccccCCCCCcEEEee
Q 045837 96 NSNITVVAGIDLNGNDIAGY-----------------FPAELG--WLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVS 156 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 156 (527)
+.++++|++|+|++|.+++. ++..++ ++++|++|+|++|++.+.++..|+++.+|++|+|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 56778888888888888875 777777 88888888888888888888888888888888888
Q ss_pred cCc-Ccc-cCCcccccC------CcccEEecccCCCCCCcch--hhhc-cccchhhccccccccccccccC-CCCcceEe
Q 045837 157 NNR-LVG-SFPNVCLSW------TSLRYLDLRYNNFEGEVPR--ELFK-MKLDAIFLNNNRFSSWIPETIG-ESTVSVVT 224 (527)
Q Consensus 157 ~n~-l~~-~~~~~~~~l------~~L~~L~Ls~n~i~~~~p~--~~~~-~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~ 224 (527)
+|+ +++ .++..+..+ .+|++|+|++|.++ .++. .+.. .+|++|++++|+++|.++ .++ ..+|++|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 887 776 677666665 78888888888887 7776 5554 578888888888886666 433 34577777
Q ss_pred ccCCcCCccCCCCCCCCCC-CcEEEcccCCCCCCChhhccCCC--CCCEEEccCCcccccCCcccC-------CCCCCcE
Q 045837 225 FAHNNFSGCVPRSIGNMPN-VNEIILSNNDLMGCLPSEIGWLK--KLTVFDASSNSFYGSVPQSFS-------SLESIHR 294 (527)
Q Consensus 225 L~~n~l~~~~~~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~ 294 (527)
+++|++. .++..++.+.+ |++|+|++|.++ .++..+..+. +|++|+|++|++++.++..|. .+.+|++
T Consensus 360 L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 7777777 56666777777 777777777777 6666665544 677777777777766666666 5566777
Q ss_pred EeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCC-------CCceecCCCCCCCCCC
Q 045837 295 LVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSK-------EGGVFDDTSNCLAQRP 354 (527)
Q Consensus 295 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~l~~N~l~~~~ 354 (527)
|+|++|+|+++....+..+++|++|+|++|+++.+....+.... +|+.|++++|.|+.++
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 504 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence 77777777654444455566666666666666643333332221 5566666666655444
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.9e-28 Score=242.31 Aligned_cols=248 Identities=17% Similarity=0.178 Sum_probs=171.3
Q ss_pred CccccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccc--ccccccCCCCCcEEEe
Q 045837 82 VCSYYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGI--IPESLSNWKLIYEFDV 155 (527)
Q Consensus 82 ~c~~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L 155 (527)
.|.|.++.|..... .....+|++|+|++|.+..+....|.++++|++|+|++|+|... .+..+.++.+|++|+|
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 47788777754220 11224566666666666654434456666666666666666532 2344555666666666
Q ss_pred ecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccc-ccc-CCCCcceEeccCCcCCcc
Q 045837 156 SNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIP-ETI-GESTVSVVTFAHNNFSGC 233 (527)
Q Consensus 156 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~~~ 233 (527)
++|.+. .++..+..+.+|++|+|++|.++ +... ..+ ...+|++|++++|.+.+.
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-----------------------QMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEE-----------------------SSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCccc-----------------------ccccchhhhhccCCCEEECCCCcCCcc
Confidence 666665 34444556666666666666655 2221 112 234577788888877777
Q ss_pred CCCCCCCCCCCcEEEcccCCCCC-CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhC
Q 045837 234 VPRSIGNMPNVNEIILSNNDLMG-CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICK 312 (527)
Q Consensus 234 ~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 312 (527)
.+..|..+.+|++|+|++|.+.+ .++..+..+++|++|+|++|++++..+..|..+.+|++|+|++|++++.....+..
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 77778888888888888888875 46677888888888888888888777778888888888888888888777777888
Q ss_pred CCCCcEEEecCcccCCCCCCCCCCC-CCCceecCCCCCCCCC
Q 045837 313 LPNINNFTFSYNYFQGLGNECIPGS-KEGGVFDDTSNCLAQR 353 (527)
Q Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~ 353 (527)
+++|++|++++|++++..+..+..+ .+|++|++++|.|+..
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 8888888888888888877777777 4888888888888754
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=4.6e-28 Score=242.48 Aligned_cols=249 Identities=15% Similarity=0.213 Sum_probs=213.4
Q ss_pred CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837 95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL 174 (527)
Q Consensus 95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 174 (527)
.+.++.+|++|+|++|.+++..+..|.++++|++|+|++|++.. ++..+. .+|++|++++|++++.....|.++.+|
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence 36788999999999999999888999999999999999999984 444443 799999999999997777778999999
Q ss_pred cEEecccCCCCC--CcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837 175 RYLDLRYNNFEG--EVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN 252 (527)
Q Consensus 175 ~~L~Ls~n~i~~--~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 252 (527)
++|++++|.++. ..+..+...+|++|++++|++++. +..+. .+|++|++++|.+.+.....|..+.+|++|+|++|
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l-~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI-PKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSC-CSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred CEEECCCCccccCCCCcccccCCccCEEECcCCCCCcc-Ccccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 999999999963 444444446999999999999884 33333 57999999999999888888999999999999999
Q ss_pred CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhC------CCCCcEEEecCccc
Q 045837 253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICK------LPNINNFTFSYNYF 326 (527)
Q Consensus 253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~------l~~L~~L~Ls~N~l 326 (527)
.+++..+..+..+.+|++|+|++|+++ .++..+..+.+|++|+|++|+|++.....|.. ..+|++|++++|.+
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 999877778999999999999999998 78888999999999999999999877776654 36789999999998
Q ss_pred C--CCCCCCCCCCCCCceecCCCCC
Q 045837 327 Q--GLGNECIPGSKEGGVFDDTSNC 349 (527)
Q Consensus 327 ~--~~~~~~~~~l~~L~~L~l~~N~ 349 (527)
. +..+..|..+.+|+.|++++|.
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccCcccccccchhhhhhccccc
Confidence 8 6677788999999999999885
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=5e-28 Score=257.20 Aligned_cols=249 Identities=15% Similarity=0.142 Sum_probs=159.8
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcc-cCCcccccCCcc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVG-SFPNVCLSWTSL 174 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 174 (527)
+..+++|++|+|++|.+++..+..|.++++|++|+|++|+|+. ++.. .+.+|++|+|++|++++ .++..|.++.+|
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L 117 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQL 117 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcc
Confidence 4566777788888887777667777777788888888887773 4433 67778888888887775 356677778888
Q ss_pred cEEecccCCCCCCcchhhhcccc--chhhcccccc--ccccccccCC---------------------------------
Q 045837 175 RYLDLRYNNFEGEVPRELFKMKL--DAIFLNNNRF--SSWIPETIGE--------------------------------- 217 (527)
Q Consensus 175 ~~L~Ls~n~i~~~~p~~~~~~~L--~~L~L~~n~l--~~~~~~~~~~--------------------------------- 217 (527)
++|+|++|.+++.....+ .+| ++|++++|.+ .+..+..+..
T Consensus 118 ~~L~L~~n~l~~~~~~~l--~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 118 KFLGLSTTHLEKSSVLPI--AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp CEEEEEESSCCGGGGGGG--TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred eEEEecCcccchhhcccc--ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 888888887764211111 344 8888888777 3333222211
Q ss_pred ---------------------------------------------------CCcceEeccCCcCCccCCCCC-----CCC
Q 045837 218 ---------------------------------------------------STVSVVTFAHNNFSGCVPRSI-----GNM 241 (527)
Q Consensus 218 ---------------------------------------------------~~L~~L~L~~n~l~~~~~~~l-----~~l 241 (527)
.+|++|++++|++.+.++..+ +.+
T Consensus 196 ~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l 275 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275 (520)
T ss_dssp CEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC
T ss_pred cccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC
Confidence 156777777777776666665 444
Q ss_pred CCCcEEEcccCCCCCCCh-hh-------------------------ccCCCCCCEEEccCCcccccCCcccCCCCCCcEE
Q 045837 242 PNVNEIILSNNDLMGCLP-SE-------------------------IGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRL 295 (527)
Q Consensus 242 ~~L~~L~Ls~N~l~~~~p-~~-------------------------~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 295 (527)
.+|+.+++++|.+ .++ .. +..+.+|++|+|++|++++.++..+..+.+|++|
T Consensus 276 ~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 353 (520)
T 2z7x_B 276 KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353 (520)
T ss_dssp CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEE
T ss_pred ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEE
Confidence 4444444444443 111 00 1456677777777777776666677777777777
Q ss_pred eccCCCCCC--cchhhhhCCCCCcEEEecCcccCC-CCCCCCCCCCCCceecCCCCCCC
Q 045837 296 VLSYNQLTG--YVSEQICKLPNINNFTFSYNYFQG-LGNECIPGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 296 ~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~ 351 (527)
+|++|++++ .++..+.++++|++|++++|++++ +....+..+.+|+.|++++|.|+
T Consensus 354 ~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp ECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred EccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 777777775 344567777777777777777776 33333555566666666666664
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=6.1e-28 Score=261.34 Aligned_cols=253 Identities=15% Similarity=0.140 Sum_probs=227.5
Q ss_pred eEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecc
Q 045837 101 VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLR 180 (527)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 180 (527)
+|+.|+|++|.+.+.....|.++++|++|+|++|+++ .++..+.++.+|++|++++|.+.+..+..+..+.+|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 8999999999999988888999999999999999998 677789999999999999999998878889999999999999
Q ss_pred cCCCCCCcchhhhc--cccchhhcccccccccc--ccccC-CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC
Q 045837 181 YNNFEGEVPRELFK--MKLDAIFLNNNRFSSWI--PETIG-ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM 255 (527)
Q Consensus 181 ~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~--~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 255 (527)
+|.+.+.++...+. .+|++|++++|.+.+.. ...++ ..+|++|++++|++.+..+..|..+.+|++|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 99998777765433 69999999999998865 44443 467999999999999888889999999999999999998
Q ss_pred CCChh-hccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc---chhhhhCCCCCcEEEecCcccCCCCC
Q 045837 256 GCLPS-EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY---VSEQICKLPNINNFTFSYNYFQGLGN 331 (527)
Q Consensus 256 ~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~l~~L~~L~Ls~N~l~~~~~ 331 (527)
+..+. .+..+++|++|+|++|.+++..+..+.++.+|++|+|++|.+++. ....+..+.+|++|++++|++++..+
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 76654 488999999999999999988888999999999999999999873 23568899999999999999999999
Q ss_pred CCCCCCCCCceecCCCCCCCCCC
Q 045837 332 ECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 332 ~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
..|.++.+|+.|++++|.|++..
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGG
T ss_pred hhhccccCCCEEECCCCccCcCC
Confidence 99999999999999999998754
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.8e-27 Score=258.52 Aligned_cols=135 Identities=20% Similarity=0.206 Sum_probs=109.4
Q ss_pred CCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCccc-ccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcE
Q 045837 240 NMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFY-GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINN 318 (527)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 318 (527)
.+.+++++++++|.+.+..+..+..+.+|++|+|++|++. +..+..|..+.+|++|+|++|+|+++.+..|.++++|++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 3344555555555555555556677788889999988744 456778999999999999999999999999999999999
Q ss_pred EEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC-----CcccccccCCCCCCC
Q 045837 319 FTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA-----TTCSPVVSNPVDCSK 374 (527)
Q Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-----~~~~~~~~np~~C~~ 374 (527)
|+|++|+|+++.+..|.++++|++||+++|.|++....... -....+.+|+|.|+.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999998999999999999999999988655432 234567899999984
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.8e-28 Score=241.08 Aligned_cols=210 Identities=18% Similarity=0.227 Sum_probs=138.6
Q ss_pred CCCcceEEEEEcCCCCcCCC--CccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCC-cccccCC
Q 045837 96 NSNITVVAGIDLNGNDIAGY--FPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP-NVCLSWT 172 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~ 172 (527)
+..+++|++|+|++|.+... .+..+..+.+|++|+|++|.+.. ++..|.++.+|++|++++|++++... ..+..+.
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhcc
Confidence 67889999999999998743 24567789999999999999985 55678999999999999999986554 5788899
Q ss_pred cccEEecccCCCCCCcchhhhc-cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEccc
Q 045837 173 SLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSN 251 (527)
Q Consensus 173 ~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 251 (527)
+|++|++++|.+++..+..+.. .+|++|++++|.+.+. ..+..+..+.+|++|+|++
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN----------------------FLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG----------------------EECSCCTTCTTCCEEECTT
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc----------------------cchhHHhhCcCCCEEECCC
Confidence 9999999999987554443332 3555555555554431 2344455555555555555
Q ss_pred CCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCC-CCcEEEecCcccCC
Q 045837 252 NDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP-NINNFTFSYNYFQG 328 (527)
Q Consensus 252 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~ 328 (527)
|.+++..+..+..+.+|++|+|++|++++.....+..+.+|++|+|++|++++..+..+..+. +|++|+|++|.+++
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 555544444555555555555555555544444455555555555555555555554455542 55555555555544
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=5.1e-28 Score=261.35 Aligned_cols=246 Identities=17% Similarity=0.119 Sum_probs=163.4
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 175 (527)
+..+.+|+.|+|++|.+.+..+..|+++++|++|+|++|.|.+.....|+++.+|++|+|++|.+++..+..|.++.+|+
T Consensus 95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 34444555555555555544444445555555555555555544333345555555555555555544444455555555
Q ss_pred EEecccCCCCCCcchhhhccccchhhccccccc-------------------cccccccCCCCcceEeccCCcCCccCCC
Q 045837 176 YLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFS-------------------SWIPETIGESTVSVVTFAHNNFSGCVPR 236 (527)
Q Consensus 176 ~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~-------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 236 (527)
+|+|++|.+++. +.. ...+|+.|++++|.+. ..... ...+|++|+|++|.+.+. .
T Consensus 175 ~L~L~~N~l~~~-~~~-~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~--~ 248 (597)
T 3oja_B 175 NLQLSSNRLTHV-DLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--A 248 (597)
T ss_dssp EEECTTSCCSBC-CGG-GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCC--G
T ss_pred EEECcCCCCCCc-Chh-hhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCCC--h
Confidence 555555554421 100 0122222222222222 11110 113577888888888764 5
Q ss_pred CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCC
Q 045837 237 SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNI 316 (527)
Q Consensus 237 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 316 (527)
.+..+.+|++|+|++|.+.+..+..|+.+.+|++|+|++|.+++ ++..+..+++|+.|+|++|.+++ ++..+..+++|
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L 326 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRL 326 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTC
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCC
Confidence 68899999999999999998889999999999999999999985 56677789999999999999994 56778899999
Q ss_pred cEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837 317 NNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 352 (527)
++|+|++|.|++.. +..+.+|+.|++++|.+++
T Consensus 327 ~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 327 ENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 99999999998873 6778899999999999874
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.3e-27 Score=249.40 Aligned_cols=228 Identities=16% Similarity=0.155 Sum_probs=152.0
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
.+++.|+|++|++.++.+..|.++++|++|+|++|+|.++.+..|.++.+|++|+|++|++++.....|.++.+|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 35566666666666655556666666666666666666555556666666666666666666544455555666666666
Q ss_pred ccCCCCCCcchhhhccccchhhccccccccccccccC-CCCcceEeccCCc-CCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837 180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNN-FSGCVPRSIGNMPNVNEIILSNNDLMGC 257 (527)
Q Consensus 180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 257 (527)
++|.++ .++ ...+. ..+|++|++++|+ +.......|.++.+|++|+|++|.+++
T Consensus 155 ~~N~l~-~~~----------------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 155 RNNPIE-SIP----------------------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp CSCCCC-EEC----------------------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCCCcc-eeC----------------------HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 666655 232 22222 2346666666633 333333457777788888888887773
Q ss_pred ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837 258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS 337 (527)
Q Consensus 258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (527)
++ .+..+.+|++|+|++|++++..+..|.++.+|++|+|++|+|++..+..|.++++|++|+|++|+|+++....|..+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 33 46777788888888888877777777778888888888888877777777777888888888888887777777777
Q ss_pred CCCceecCCCCCCCC
Q 045837 338 KEGGVFDDTSNCLAQ 352 (527)
Q Consensus 338 ~~L~~L~l~~N~l~~ 352 (527)
.+|+.|++++|.+..
T Consensus 290 ~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 290 RYLVELHLHHNPWNC 304 (452)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEccCCCcCC
Confidence 788888888877654
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=9.2e-28 Score=269.47 Aligned_cols=259 Identities=18% Similarity=0.193 Sum_probs=183.4
Q ss_pred CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccccc--ccCCCCCcEEEeecCcCcccCC-cccccC
Q 045837 95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPES--LSNWKLIYEFDVSNNRLVGSFP-NVCLSW 171 (527)
Q Consensus 95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l 171 (527)
.+.++++|++|+|++|.+.+..+..|.++.+|++|+|++|++.+.++.. |.++.+|++|+|++|.+++... ..|.++
T Consensus 68 ~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L 147 (844)
T 3j0a_A 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147 (844)
T ss_dssp TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence 3677888999999999998888888899999999999999888755544 8888999999999998886544 468888
Q ss_pred CcccEEecccCCCCCCcchhhhc---cccchhhccccccccccccccCC-------CCcceEeccCCcCCccCCCCCC--
Q 045837 172 TSLRYLDLRYNNFEGEVPRELFK---MKLDAIFLNNNRFSSWIPETIGE-------STVSVVTFAHNNFSGCVPRSIG-- 239 (527)
Q Consensus 172 ~~L~~L~Ls~n~i~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~l~-- 239 (527)
.+|++|+|++|.+++..+..+.. .+|+.|+|++|.+.+..+..++. ..|++|++++|.+.+..+..+.
T Consensus 148 ~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 99999999999888666655543 56777777777776655443322 2367777777655543322211
Q ss_pred ----------------------------------C--CCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCC
Q 045837 240 ----------------------------------N--MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP 283 (527)
Q Consensus 240 ----------------------------------~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 283 (527)
+ ..+|++|+|++|.+.+..+..|..+.+|++|+|++|++++..+
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 1 1456777777777666666666667777777777777766666
Q ss_pred cccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837 284 QSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR 353 (527)
Q Consensus 284 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 353 (527)
..|.++.+|++|+|++|.+++..+..+.++++|++|++++|++.++....|.++.+|+.|++++|.|+++
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 6666777777777777777666666666777777777777777666666666667777777777666654
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=248.14 Aligned_cols=228 Identities=17% Similarity=0.146 Sum_probs=149.6
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
.+++.|+|++|++.++....|.++++|++|+|++|+|.++....|.++.+|++|+|++|+++......|..+.+|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555666666665555555556666666666666665555555566666666666666665444445555566666666
Q ss_pred ccCCCCCCcchhhhccccchhhccccccccccccccC-CCCcceEeccCCcCCc-cCCCCCCCCCCCcEEEcccCCCCCC
Q 045837 180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSG-CVPRSIGNMPNVNEIILSNNDLMGC 257 (527)
Q Consensus 180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~ 257 (527)
++|.++ ......+. ..+|++|+|++|+..+ .....|.++.+|++|+|++|.++ .
T Consensus 144 ~~N~i~-----------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 144 RNNPIE-----------------------SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp CSCCCC-----------------------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCCccc-----------------------ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 666554 32222222 2456667776643333 33345777778888888888777 4
Q ss_pred ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837 258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS 337 (527)
Q Consensus 258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (527)
++ .+..+.+|++|+|++|++++..+..|.++.+|++|+|++|+|+++.+..|.++++|++|+|++|+|+++....|..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 46777788888888888777767777777888888888888877777777777888888888888887777777777
Q ss_pred CCCceecCCCCCCCC
Q 045837 338 KEGGVFDDTSNCLAQ 352 (527)
Q Consensus 338 ~~L~~L~l~~N~l~~ 352 (527)
.+|+.|++++|.+..
T Consensus 279 ~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 279 HHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEcCCCCccC
Confidence 788888888777653
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=268.56 Aligned_cols=262 Identities=17% Similarity=0.190 Sum_probs=219.5
Q ss_pred CCCCcceEEEEEcCCCCcCCCC-ccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcc--cccC
Q 045837 95 DNSNITVVAGIDLNGNDIAGYF-PAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNV--CLSW 171 (527)
Q Consensus 95 ~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l 171 (527)
.+.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|+|.+..+..|.++.+|++|+|++|++++.++.. |.++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 3677888999999998665554 677889999999999999999888888999999999999999988755544 8888
Q ss_pred CcccEEecccCCCCCCcch-hhhc-cccchhhccccccccccccccCC---CCcceEeccCCcCCccCCCCCCCCCC---
Q 045837 172 TSLRYLDLRYNNFEGEVPR-ELFK-MKLDAIFLNNNRFSSWIPETIGE---STVSVVTFAHNNFSGCVPRSIGNMPN--- 243 (527)
Q Consensus 172 ~~L~~L~Ls~n~i~~~~p~-~~~~-~~L~~L~L~~n~l~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~l~~l~~--- 243 (527)
.+|++|+|++|.+++..+. .+.. .+|++|+|++|.+++.....++. .+|++|++++|.+.+..+..++.+.+
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 9999999999998855443 3333 68999999999988877666643 57899999999998877776666655
Q ss_pred ---CcEEEcccCCCCCCChhhccC--------------------------------------CCCCCEEEccCCcccccC
Q 045837 244 ---VNEIILSNNDLMGCLPSEIGW--------------------------------------LKKLTVFDASSNSFYGSV 282 (527)
Q Consensus 244 ---L~~L~Ls~N~l~~~~p~~~~~--------------------------------------l~~L~~L~Ls~n~l~~~~ 282 (527)
|++|++++|.+++..+..+.. ..+|++|+|++|.+.+..
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 999999999877555433321 267999999999999888
Q ss_pred CcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCC
Q 045837 283 PQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQ 356 (527)
Q Consensus 283 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 356 (527)
+..|..+.+|+.|+|++|+|++..+..|.++.+|++|+|++|++++..+..|.++.+|+.|++++|.|..+...
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh
Confidence 88999999999999999999999889999999999999999999999899999999999999999999887654
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=6.4e-28 Score=259.08 Aligned_cols=278 Identities=17% Similarity=0.201 Sum_probs=185.7
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcc-cCCcccccCCcc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVG-SFPNVCLSWTSL 174 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 174 (527)
+.++++|++|+|++|.+.+..+..|.++++|++|++++|++.+.....|+++.+|++|+|++|.+.+ .++..|.++.+|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence 6678888999999988888777788888999999999998887666568889999999999998886 367888889999
Q ss_pred cEEecccCCCCCCcchhhhc-c----------------------------------------------------------
Q 045837 175 RYLDLRYNNFEGEVPRELFK-M---------------------------------------------------------- 195 (527)
Q Consensus 175 ~~L~Ls~n~i~~~~p~~~~~-~---------------------------------------------------------- 195 (527)
++|++++|.+++..+..+.. .
T Consensus 152 ~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~ 231 (570)
T 2z63_A 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231 (570)
T ss_dssp CEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEE
T ss_pred CEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceee
Confidence 99999988876432221111 1
Q ss_pred ---------------------------------------------------ccchhhcccccccccccccc---------
Q 045837 196 ---------------------------------------------------KLDAIFLNNNRFSSWIPETI--------- 215 (527)
Q Consensus 196 ---------------------------------------------------~L~~L~L~~n~l~~~~~~~~--------- 215 (527)
+|++|++++|.+.+ ++..+
T Consensus 232 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~ 310 (570)
T 2z63_A 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLE 310 (570)
T ss_dssp EEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEE
T ss_pred eccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEe
Confidence 12222222222221 00000
Q ss_pred ----------------------------------CCCCcceEeccCCcCCccC--CCC----------------------
Q 045837 216 ----------------------------------GESTVSVVTFAHNNFSGCV--PRS---------------------- 237 (527)
Q Consensus 216 ----------------------------------~~~~L~~L~L~~n~l~~~~--~~~---------------------- 237 (527)
...+|++|++++|.+.+.. +..
T Consensus 311 l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 390 (570)
T 2z63_A 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390 (570)
T ss_dssp EESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE
T ss_pred eccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc
Confidence 1122444444444433211 111
Q ss_pred -CCCCCCCcEEEcccCCCCCCCh-hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCC-CcchhhhhCCC
Q 045837 238 -IGNMPNVNEIILSNNDLMGCLP-SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT-GYVSEQICKLP 314 (527)
Q Consensus 238 -l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~ 314 (527)
+..+.+|++|++++|.+.+..+ ..+.++++|++|+|++|.+++..+..|.++.+|++|+|++|.++ +.++..+..++
T Consensus 391 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 3444555555555555554333 34666777777777777777667777777788888888888776 45667778888
Q ss_pred CCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCCCC----CcccccccCCCCCCC
Q 045837 315 NINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQKWA----TTCSPVVSNPVDCSK 374 (527)
Q Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~----~~~~~~~~np~~C~~ 374 (527)
+|++|++++|++++..+..|..+.+|++|++++|.|++.+...+. -....+.+|++.|+.
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 888888888888887777888888888888888888877644322 234456788888763
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.1e-27 Score=256.91 Aligned_cols=257 Identities=18% Similarity=0.155 Sum_probs=156.5
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCccc-CCcccccCCcc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGS-FPNVCLSWTSL 174 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L 174 (527)
+..+++|++|+|++|.+++..++.|.++++|++|+|++|+|+. ++.. .+.+|++|+|++|++++. ++..|.++.+|
T Consensus 72 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 5667777777777777777666777777777777777777773 3333 677777777777777753 34667777777
Q ss_pred cEEecccCCCCCCcchhhhccccchhhcccccc--ccccccccCC-----------------------------------
Q 045837 175 RYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRF--SSWIPETIGE----------------------------------- 217 (527)
Q Consensus 175 ~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l--~~~~~~~~~~----------------------------------- 217 (527)
++|+|++|.+++.....+...+|++|++++|.+ ++..+..+..
T Consensus 149 ~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 228 (562)
T 3a79_B 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228 (562)
T ss_dssp CEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEE
T ss_pred cEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecc
Confidence 888887777764222222222447778877777 3333222211
Q ss_pred -----------------------------------------------CCcceEeccCCcCCccCCCCC------------
Q 045837 218 -----------------------------------------------STVSVVTFAHNNFSGCVPRSI------------ 238 (527)
Q Consensus 218 -----------------------------------------------~~L~~L~L~~n~l~~~~~~~l------------ 238 (527)
.+|++|++++|.+.+.++..+
T Consensus 229 ~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~ 308 (562)
T 3a79_B 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308 (562)
T ss_dssp ECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred cccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence 156677777777776555544
Q ss_pred -----------------------------------------CCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCc
Q 045837 239 -----------------------------------------GNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNS 277 (527)
Q Consensus 239 -----------------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 277 (527)
..+.+|++|++++|.+++.++..++++.+|++|+|++|+
T Consensus 309 ~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred hhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 444556666666666665555556666666666666666
Q ss_pred ccc--cCCcccCCCCCCcEEeccCCCCCCcch-hhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837 278 FYG--SVPQSFSSLESIHRLVLSYNQLTGYVS-EQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 278 l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
+++ .++..+..+.+|++|+|++|++++.++ ..+..+.+|++|++++|++++..+..+. .+|+.|++++|.|+.++
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip 466 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP 466 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC
Confidence 653 222345556666666666666655222 3355556666666666666554433332 46667777777766655
Q ss_pred CCC
Q 045837 355 SQK 357 (527)
Q Consensus 355 ~~~ 357 (527)
...
T Consensus 467 ~~~ 469 (562)
T 3a79_B 467 KDV 469 (562)
T ss_dssp TTT
T ss_pred hhh
Confidence 443
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1e-27 Score=256.48 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=74.4
Q ss_pred CcEEEcccCCCCCCChhhc-cCCCCCCEEEccCCcccccCC---cccCCCCCCcEEeccCCCCCCcch--hhhhCCCCCc
Q 045837 244 VNEIILSNNDLMGCLPSEI-GWLKKLTVFDASSNSFYGSVP---QSFSSLESIHRLVLSYNQLTGYVS--EQICKLPNIN 317 (527)
Q Consensus 244 L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~l~~L~ 317 (527)
|++|++++|.+. .++..+ ..+++|++|+|++|++++.++ ..++.+.+|++|+|++|+|++... ..+..+++|+
T Consensus 312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence 333333444333 233333 357778888888888876553 236677788888888888876532 4577888888
Q ss_pred EEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCC
Q 045837 318 NFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQ 356 (527)
Q Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 356 (527)
+|++++|+++++ +..+..+.+|++|++++|.|+.++..
T Consensus 391 ~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~ 428 (549)
T 2z81_A 391 SLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTC 428 (549)
T ss_dssp EEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCTT
T ss_pred EEECCCCCCccC-ChhhcccccccEEECCCCCcccccch
Confidence 888888888754 55667777888888888887765543
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.3e-27 Score=247.68 Aligned_cols=212 Identities=16% Similarity=0.120 Sum_probs=178.4
Q ss_pred CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837 95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL 174 (527)
Q Consensus 95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 174 (527)
.+.++++|+.|+|++|.+.++.+..|.++.+|++|+|++|+|+++....|.++.+|++|+|++|+++......|.++.+|
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence 46789999999999999999888899999999999999999998888889999999999999999997777789999999
Q ss_pred cEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCC
Q 045837 175 RYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDL 254 (527)
Q Consensus 175 ~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 254 (527)
++|+|++|+..+.++...+. +..+|++|+|++|++.+. ..+..+.+|++|+|++|.+
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~---------------------~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFE---------------------GLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CEEECCCCTTCCEECTTTTT---------------------TCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCC
T ss_pred cEEeCCCCCCccccChhhcc---------------------CCCCCCEEECCCCccccc--ccccccccccEEECcCCcC
Confidence 99999996544344432211 224577777777777643 3477888899999999999
Q ss_pred CCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837 255 MGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329 (527)
Q Consensus 255 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 329 (527)
++..+..|.++.+|++|+|++|++++..+..|.++.+|++|+|++|+|++...+.+..+.+|++|+|++|.+...
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 888888889999999999999999888888888899999999999999888777888889999999999987653
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3.7e-27 Score=261.70 Aligned_cols=267 Identities=19% Similarity=0.253 Sum_probs=155.9
Q ss_pred CCCcceEEEEEcCCCC-cCC-CCccccCCCC-------CCCEEEccCCcccccccc--cccCCCCCcEEEeecCcCcccC
Q 045837 96 NSNITVVAGIDLNGND-IAG-YFPAELGWLS-------DLALFHVNSNRFCGIIPE--SLSNWKLIYEFDVSNNRLVGSF 164 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~ 164 (527)
+.++++|+.|+|++|+ +++ .++..++++. +|++|+|++|+|. .++. .|.++.+|++|+|++|+++ .+
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~l 588 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HL 588 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BC
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cc
Confidence 3445566666666665 555 4444333332 5555555555555 4444 5555555555555555555 44
Q ss_pred CcccccCCcccEEecccCCCCCCcchhhhc-cc-cchhhccccccccccccccCC-------------------------
Q 045837 165 PNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MK-LDAIFLNNNRFSSWIPETIGE------------------------- 217 (527)
Q Consensus 165 ~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~-L~~L~L~~n~l~~~~~~~~~~------------------------- 217 (527)
+ .|..+.+|++|+|++|.++ .++..+.. .+ |++|+|++|.++ .++..+..
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence 4 4555555555555555555 44444433 23 555555555544 22333222
Q ss_pred -------CCcceEeccCCcCCccCCCC-CCCCCCCcEEEcccCCCCCCChhhccCC--------CCCCEEEccCCccccc
Q 045837 218 -------STVSVVTFAHNNFSGCVPRS-IGNMPNVNEIILSNNDLMGCLPSEIGWL--------KKLTVFDASSNSFYGS 281 (527)
Q Consensus 218 -------~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l--------~~L~~L~Ls~n~l~~~ 281 (527)
.+|++|+|++|.+.. ++.. +..+.+|++|+|++|.++ .++..+... ++|++|+|++|+++ .
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~ 742 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-S 742 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-C
T ss_pred hhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-c
Confidence 234455555555542 2222 235566777777777776 444433222 27777888887777 5
Q ss_pred CCcccC--CCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecC------cccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837 282 VPQSFS--SLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY------NYFQGLGNECIPGSKEGGVFDDTSNCLAQR 353 (527)
Q Consensus 282 ~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 353 (527)
++..+. .+.+|+.|+|++|+|++ ++..+.++.+|++|+|++ |++.+.++..+.++.+|+.|+|++|.|..+
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I 821 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc
Confidence 666665 77888888888888876 566777888888888865 667777777788888888888888888766
Q ss_pred CCCCCCC-cccccccCCCC
Q 045837 354 PSQKWAT-TCSPVVSNPVD 371 (527)
Q Consensus 354 ~~~~~~~-~~~~~~~np~~ 371 (527)
+...... ....+.+|++.
T Consensus 822 p~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 822 DEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp CSCCCSSSCEEECCSCTTC
T ss_pred CHhhcCCCCEEECCCCCCC
Confidence 6554321 12234455543
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=4.4e-27 Score=251.52 Aligned_cols=277 Identities=19% Similarity=0.202 Sum_probs=183.5
Q ss_pred CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccc-ccccccCCCCCcEEEeecCcCcccC-CcccccCC
Q 045837 95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGI-IPESLSNWKLIYEFDVSNNRLVGSF-PNVCLSWT 172 (527)
Q Consensus 95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~ 172 (527)
.+..+++|++|+|++|.+.+..+..|+++++|++|+|++|++.+. .+..|+++.+|++|++++|.+.+.+ ...|.++.
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 366778888888888888887777788888888888888888763 4567888888888888888743344 35788888
Q ss_pred cccEEecccCCCCCCcchhhh-------------------------ccccchhhcccccccccc----------------
Q 045837 173 SLRYLDLRYNNFEGEVPRELF-------------------------KMKLDAIFLNNNRFSSWI---------------- 211 (527)
Q Consensus 173 ~L~~L~Ls~n~i~~~~p~~~~-------------------------~~~L~~L~L~~n~l~~~~---------------- 211 (527)
+|++|++++|.+++.++..+. ..+|++|++++|++++..
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 999999999988765544332 135666777777665521
Q ss_pred --------------------------------------------------------------------------------
Q 045837 212 -------------------------------------------------------------------------------- 211 (527)
Q Consensus 212 -------------------------------------------------------------------------------- 211 (527)
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence
Q ss_pred -----------------cccc--CCCCcceEeccCCcCCccC---CCCCCCCCCCcEEEcccCCCCCCCh--hhccCCCC
Q 045837 212 -----------------PETI--GESTVSVVTFAHNNFSGCV---PRSIGNMPNVNEIILSNNDLMGCLP--SEIGWLKK 267 (527)
Q Consensus 212 -----------------~~~~--~~~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~ 267 (527)
+..+ ...+|++|++++|++.+.+ ...++.+.+|++|+|++|.+++... ..+..+++
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 0000 1234566666666666543 2235566677777777777763321 34677777
Q ss_pred CCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchh-----------------hhhCCCCCcEEEecCcccCCCC
Q 045837 268 LTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSE-----------------QICKLPNINNFTFSYNYFQGLG 330 (527)
Q Consensus 268 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-----------------~l~~l~~L~~L~Ls~N~l~~~~ 330 (527)
|++|||++|+++ .++..+..+.+|++|+|++|+|++.... .+.++++|++|+|++|+|+.+
T Consensus 389 L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~i- 466 (549)
T 2z81_A 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTL- 466 (549)
T ss_dssp CCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC-
T ss_pred CCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcC-
Confidence 888888888777 5666666667777777777766532111 112566777777777777644
Q ss_pred CCCCCCCCCCceecCCCCCCCCCCCCCC----CCcccccccCCCCCCC
Q 045837 331 NECIPGSKEGGVFDDTSNCLAQRPSQKW----ATTCSPVVSNPVDCSK 374 (527)
Q Consensus 331 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~----~~~~~~~~~np~~C~~ 374 (527)
+. ...+.+|++|++++|.|++.+.... .-....+.+|+|.|+.
T Consensus 467 p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 467 PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 32 3456778888888888887664422 2234457789998873
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.2e-29 Score=247.77 Aligned_cols=246 Identities=14% Similarity=0.106 Sum_probs=201.9
Q ss_pred CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccc-cccccccc-------CCCCCcEEEeecCcCcccCCccc-
Q 045837 98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFC-GIIPESLS-------NWKLIYEFDVSNNRLVGSFPNVC- 168 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~- 168 (527)
...+|+.|++++|.+ .++..+... |++|+|++|++. ..++..+. ++.+|++|+|++|++++.++..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 567899999999999 566666544 899999999994 44555554 78999999999999998888876
Q ss_pred -ccCCcccEEecccCCCCCCcchhhhc------cccchhhccccccccccccccCC-CCcceEeccCCcCCccC--CCC-
Q 045837 169 -LSWTSLRYLDLRYNNFEGEVPRELFK------MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCV--PRS- 237 (527)
Q Consensus 169 -~~l~~L~~L~Ls~n~i~~~~p~~~~~------~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~--~~~- 237 (527)
..+.+|++|+|++|.+++. +..+.. .+|++|+|++|++.+..+..++. .+|++|++++|++.+.+ +..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 8899999999999999965 554443 68999999999999988676654 56999999999987642 222
Q ss_pred -CCCCCCCcEEEcccCCCCCC--C-hhhccCCCCCCEEEccCCcccccCC-cccCCCCCCcEEeccCCCCCCcchhhhhC
Q 045837 238 -IGNMPNVNEIILSNNDLMGC--L-PSEIGWLKKLTVFDASSNSFYGSVP-QSFSSLESIHRLVLSYNQLTGYVSEQICK 312 (527)
Q Consensus 238 -l~~l~~L~~L~Ls~N~l~~~--~-p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 312 (527)
+..+.+|++|+|++|.+++. + ...+.++++|++|+|++|++++..+ ..+..+.+|++|+|++|+|+ .++..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 38899999999999999832 2 2345678999999999999998764 45667899999999999998 5566555
Q ss_pred CCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837 313 LPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR 353 (527)
Q Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 353 (527)
.+|++|+|++|+|++. +. +..+.+|++|++++|.|++.
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 7899999999999998 44 88999999999999999753
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.5e-26 Score=232.68 Aligned_cols=244 Identities=19% Similarity=0.276 Sum_probs=151.8
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 175 (527)
+..+++|++|+|++|.+.+. ..+.++++|++|++++|++.+... +.++.+|++|++++|.....+ ..+..+.+|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~ 158 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLN 158 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCC
T ss_pred hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCc
Confidence 45677888888888887764 357788888888888888775432 777778888888777554333 2366677777
Q ss_pred EEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC
Q 045837 176 YLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM 255 (527)
Q Consensus 176 ~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 255 (527)
+|++++|.+. .+.......+|++|++++|.+.+... .....+|++|++++|.+.+... +..+.+|++|++++|.++
T Consensus 159 ~L~l~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 159 YLTVTESKVK-DVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp EEECCSSCCC-CCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EEEecCCCcC-CchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC
Confidence 7777777776 33332222567777777777665433 2233456666666666664432 555666666666666665
Q ss_pred CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCC
Q 045837 256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIP 335 (527)
Q Consensus 256 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (527)
+. +. +..+.+|++|+|++|.+++. ..+..+.+|++|+|++|++++. ..+..+++|++|++++|++++..+..+.
T Consensus 235 ~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 235 DL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp CC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred CC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence 32 22 55666666666666666532 3455566666666666666554 3455666666666666666655555555
Q ss_pred CCCCCceecCCCCCCCCCC
Q 045837 336 GSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 336 ~l~~L~~L~l~~N~l~~~~ 354 (527)
++.+|+.|++++|.+++..
T Consensus 309 ~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp TCTTCSEEECCSSSCCCCG
T ss_pred ccccCCEEEccCCcccccc
Confidence 5666666666666665543
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=8.8e-27 Score=242.33 Aligned_cols=211 Identities=19% Similarity=0.183 Sum_probs=168.1
Q ss_pred CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837 95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL 174 (527)
Q Consensus 95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 174 (527)
.+.++++|+.|+|++|.+.++.+..|.++.+|++|+|++|+|+++....|.++.+|++|+|++|.+.......|.++.+|
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence 47789999999999999999888899999999999999999998877789999999999999999997777789999999
Q ss_pred cEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCC
Q 045837 175 RYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDL 254 (527)
Q Consensus 175 ~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 254 (527)
++|+|++|+..+.++...+. +..+|++|+|++|++... + .+..+.+|++|+|++|.+
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~---------------------~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFE---------------------GLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CEEECCCCTTCCEECTTTTT---------------------TCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCC
T ss_pred CEeCCCCCCCcceeCcchhh---------------------cccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCcc
Confidence 99999996544344432221 123466666666666532 2 466777788888888888
Q ss_pred CCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837 255 MGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328 (527)
Q Consensus 255 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 328 (527)
++..+..|.++.+|++|+|++|++++..+..|.++.+|++|+|++|+|++.....+..+.+|++|+|++|.+..
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 77667777788888888888888877777777778888888888888887777777778888888888887754
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.5e-27 Score=230.02 Aligned_cols=223 Identities=14% Similarity=0.166 Sum_probs=141.1
Q ss_pred EEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccC
Q 045837 103 AGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYN 182 (527)
Q Consensus 103 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 182 (527)
+.++.+++.+..+ +.. ...+|++|+|++|+|.+.....|.++.+|++|+|++|.+++..+..|.++.+|++|+|++|
T Consensus 14 ~~~~c~~~~l~~i-p~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4556666666543 322 2356777777777777666666777777777777777776665666677777777777777
Q ss_pred C-CCCCcchhhhc-cccchhhccccccccccccccC-CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCCh
Q 045837 183 N-FEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP 259 (527)
Q Consensus 183 ~-i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 259 (527)
. ++...+..+.. .+|++|++++|.+++..+..+. ..+|++|++++|++.+.....|+.+.+|++|+|++|.+++...
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 5 54222333322 3555555555555554444333 2456666676666665555556667777777777777765444
Q ss_pred hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837 260 SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328 (527)
Q Consensus 260 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 328 (527)
..|..+.+|++|+|++|.+++..+..|.++.+|++|+|++|+|++.....+..+++|++|++++|.+.+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 456667777777777777766666667777777777777777776666666777777777777776654
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2e-27 Score=232.54 Aligned_cols=237 Identities=17% Similarity=0.195 Sum_probs=200.7
Q ss_pred CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCc-CcccCCcccccCCcccE
Q 045837 98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR-LVGSFPNVCLSWTSLRY 176 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 176 (527)
...+|++|+|++|.+.+.....|.++++|++|+|++|+|.+..+..|.++.+|++|+|++|. +....+..|..+.+|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 45689999999999999877889999999999999999998888899999999999999997 87666888999999999
Q ss_pred EecccCCCCCCcchhhhc-cccchhhccccccccccccccC-CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCC
Q 045837 177 LDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDL 254 (527)
Q Consensus 177 L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 254 (527)
|+|++|.+++..+..+.. .+|++|++++|++++.....++ ..+|++|++++|++.+.....|..+.+|++|+|++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 999999999655555554 7999999999999987766664 46799999999999987777799999999999999999
Q ss_pred CCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchh-hhhCCCCCcEEEecCcccCCCCCCC
Q 045837 255 MGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSE-QICKLPNINNFTFSYNYFQGLGNEC 333 (527)
Q Consensus 255 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~ 333 (527)
++..+..|..+.+|++|+|++|++++..+..+..+.+|++|+|++|.+...... ++. ..|+.++.+.|.+.+..+..
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~--~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--AWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH--HHHHHCCSEECCCBEEESGG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH--HHHHhcccccCccccCCchH
Confidence 988899999999999999999999977667799999999999999999864321 111 12444556677777666655
Q ss_pred CCC
Q 045837 334 IPG 336 (527)
Q Consensus 334 ~~~ 336 (527)
+.+
T Consensus 268 l~g 270 (285)
T 1ozn_A 268 LAG 270 (285)
T ss_dssp GTT
T ss_pred hCC
Confidence 443
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1.4e-26 Score=254.21 Aligned_cols=254 Identities=16% Similarity=0.190 Sum_probs=186.1
Q ss_pred CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837 97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY 176 (527)
Q Consensus 97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 176 (527)
.++++|++|+|++|.+.++....|+++++|++|+|++|++.++.+..|+++.+|++|+|++|.+++..+..+.++.+|++
T Consensus 70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 149 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149 (680)
T ss_dssp HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCE
T ss_pred hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCE
Confidence 45677888888888887765556888888888888888888777777888888888888888888777777778888888
Q ss_pred EecccCCCCCCcchhhhc---cccchhhccccccccccccccCC----------------------------CCcceEec
Q 045837 177 LDLRYNNFEGEVPRELFK---MKLDAIFLNNNRFSSWIPETIGE----------------------------STVSVVTF 225 (527)
Q Consensus 177 L~Ls~n~i~~~~p~~~~~---~~L~~L~L~~n~l~~~~~~~~~~----------------------------~~L~~L~L 225 (527)
|+|++|.+++..+..+.. .+|++|++++|.+++..+..+.. .+|++|++
T Consensus 150 L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L 229 (680)
T 1ziw_A 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229 (680)
T ss_dssp EECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred EEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence 888888887554443322 57888888888877665543321 34677777
Q ss_pred cCCcCCccCCCCCCCCCC--CcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCC
Q 045837 226 AHNNFSGCVPRSIGNMPN--VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT 303 (527)
Q Consensus 226 ~~n~l~~~~~~~l~~l~~--L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 303 (527)
++|.+.+..+..|.++.. |++|+|++|.+++..+..|+.+.+|++|+|++|++++..+..|.++.+|++|+|++|...
T Consensus 230 ~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp TTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred cCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence 777777777777776644 888888888887766777778888888888888887777777777777777777766544
Q ss_pred Cc-----ch----hhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCC
Q 045837 304 GY-----VS----EQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCL 350 (527)
Q Consensus 304 ~~-----~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 350 (527)
+. ++ ..+..+.+|++|++++|++++..+..|.++.+|++|++++|.+
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred cccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 31 11 2566677777777777777777666677777777777766653
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=3.6e-27 Score=255.33 Aligned_cols=252 Identities=17% Similarity=0.117 Sum_probs=211.6
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCccc--CCcccccCCc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGS--FPNVCLSWTS 173 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~ 173 (527)
+..+.+|++|+|++|.+ +.++ .+ .+++|++|++++|++.+.+ .+..+++|++|++++|++++. .+..+..+.+
T Consensus 303 l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377 (606)
T ss_dssp CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence 45566777788888777 4455 44 7778888888888555443 567888899999999988755 3667788899
Q ss_pred ccEEecccCCCCCCcchhhhc-cccchhhccccccccccc-ccc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcc
Q 045837 174 LRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIP-ETI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILS 250 (527)
Q Consensus 174 L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 250 (527)
|++|+|++|.++ .++..+.. .+|++|++++|++.+..+ ..+ ...+|++|++++|.+.+..+..|.++.+|++|+++
T Consensus 378 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 999999999987 45554444 689999999999998766 344 34679999999999999889999999999999999
Q ss_pred cCCCCC-CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837 251 NNDLMG-CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329 (527)
Q Consensus 251 ~N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 329 (527)
+|.+++ .++..++.+++|++|+|++|++++..+..|.++.+|++|+|++|++++..+..+.++++|++|++++|+|+.+
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 536 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc
Confidence 999987 3788899999999999999999998889999999999999999999999999999999999999999999965
Q ss_pred CCCCCCCCC-CCceecCCCCCCCCCC
Q 045837 330 GNECIPGSK-EGGVFDDTSNCLAQRP 354 (527)
Q Consensus 330 ~~~~~~~l~-~L~~L~l~~N~l~~~~ 354 (527)
+..+..+. +|++|++++|.+....
T Consensus 537 -p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 537 -KGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp -ESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred -CHhHhhhcccCcEEEccCCCcccCC
Confidence 44477776 6999999999998643
No 49
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.9e-26 Score=220.85 Aligned_cols=219 Identities=15% Similarity=0.241 Sum_probs=160.7
Q ss_pred CCCccccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCc
Q 045837 80 TDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR 159 (527)
Q Consensus 80 ~~~c~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 159 (527)
.+.|.|.|+.|.-. ..++.+++++++++. ++..+. .+|++|+|++|+|.+.....|.++.+|++|+|++|+
T Consensus 2 ~~~C~~~~~~C~c~------~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 2 EALCKKDGGVCSCN------NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp CCCBGGGTCSBEEE------TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred CccCCCCCCCCEeC------CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence 57899999998421 245689999999986 454443 679999999999998777789999999999999999
Q ss_pred CcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCC
Q 045837 160 LVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIG 239 (527)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 239 (527)
++......|.++.+|++|+|++|.++ .++...+. ...+|++|++++|++.+.....|.
T Consensus 73 l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~---------------------~l~~L~~L~l~~n~l~~~~~~~~~ 130 (270)
T 2o6q_A 73 LQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFD---------------------QLVNLAELRLDRNQLKSLPPRVFD 130 (270)
T ss_dssp CSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTT---------------------TCSSCCEEECCSSCCCCCCTTTTT
T ss_pred cCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcc---------------------cccCCCEEECCCCccCeeCHHHhC
Confidence 98666666788899999999999887 33221110 123466666666666666666677
Q ss_pred CCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEE
Q 045837 240 NMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNF 319 (527)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 319 (527)
.+.+|++|+|++|.+++.....|..+.+|++|+|++|++++..+..|..+.+|++|+|++|+|++.....+..+.+|++|
T Consensus 131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 77777777777777775555556777777777777777776555567777777777777777776666667777777777
Q ss_pred EecCcccCCC
Q 045837 320 TFSYNYFQGL 329 (527)
Q Consensus 320 ~Ls~N~l~~~ 329 (527)
+|++|.+...
T Consensus 211 ~l~~N~~~c~ 220 (270)
T 2o6q_A 211 QLQENPWDCT 220 (270)
T ss_dssp ECCSSCBCCS
T ss_pred EecCCCeeCC
Confidence 7777776543
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2e-27 Score=236.21 Aligned_cols=238 Identities=16% Similarity=0.122 Sum_probs=129.9
Q ss_pred EEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEeccc
Q 045837 102 VAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRY 181 (527)
Q Consensus 102 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 181 (527)
++.++++++.+...+...+..+++|++|+|++|+|.+..+..|.++.+|++|+|++|++++..+ +..+.+|++|+|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4444444444443333333444455555555555555444455555555555555555543322 44555555555555
Q ss_pred CCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhh
Q 045837 182 NNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSE 261 (527)
Q Consensus 182 n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 261 (527)
|.++ .++ ...+|++|++++|++++..... ..+|++|++++|++.+..+..++.+.+|++|+|++|.+++..+..
T Consensus 90 n~l~-~l~---~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 90 NYVQ-ELL---VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp SEEE-EEE---ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred Cccc-ccc---CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 5554 221 1145555555555555443322 234666666666666555555666666666666666666544444
Q ss_pred c-cCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCC
Q 045837 262 I-GWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEG 340 (527)
Q Consensus 262 ~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (527)
+ ..+.+|++|+|++|++++. .....+.+|++|+|++|+|++... .+..+.+|++|+|++|+++++ +..+..+.+|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTC
T ss_pred HhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccch-hhHhhcCCCC
Confidence 4 3566666666666666543 122335666666666666665433 356666666666666666643 3445666666
Q ss_pred ceecCCCCCCC
Q 045837 341 GVFDDTSNCLA 351 (527)
Q Consensus 341 ~~L~l~~N~l~ 351 (527)
+.|++++|.+.
T Consensus 240 ~~L~l~~N~~~ 250 (317)
T 3o53_A 240 EHFDLRGNGFH 250 (317)
T ss_dssp CEEECTTCCCB
T ss_pred CEEEccCCCcc
Confidence 66666666665
No 51
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=4.1e-26 Score=229.59 Aligned_cols=239 Identities=19% Similarity=0.261 Sum_probs=103.3
Q ss_pred CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837 97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY 176 (527)
Q Consensus 97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 176 (527)
..+++|++|+|++|.+.+.. .+..+++|++|++++|.....+. .+.++.+|++|++++|.+.+... +..+.+|++
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~--~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCG--GGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred cCCCcCCEEECcCCcccCch--hhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 34444444455444444321 14444444455554443332222 24444444455554444442211 344444444
Q ss_pred EecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837 177 LDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG 256 (527)
Q Consensus 177 L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 256 (527)
|++++|.+. .+.......+|++|++++|.+.+... .....+|++|++++|++.+... +..+.+|++|++++|.+++
T Consensus 182 L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 182 LSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp EECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred EEccCCccc-ccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 555444444 22221111344444444444444322 1122334444444444443222 4444444455554444442
Q ss_pred CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCC
Q 045837 257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG 336 (527)
Q Consensus 257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (527)
+ ..+..+.+|++|++++|++++. ..+..+.+|++|+|++|.+++..+..+.++++|++|++++|.+++..+ +..
T Consensus 258 -~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 258 -I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp -C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred -C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 1 2344444445555544444432 234444444455555444444444444444444455555444444433 344
Q ss_pred CCCCceecCCCCCC
Q 045837 337 SKEGGVFDDTSNCL 350 (527)
Q Consensus 337 l~~L~~L~l~~N~l 350 (527)
+.+|+.|++++|.|
T Consensus 332 l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 332 LSKMDSADFANQVI 345 (347)
T ss_dssp CTTCSEESSSCC--
T ss_pred hhccceeehhhhcc
Confidence 44444444444444
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=7.5e-27 Score=235.68 Aligned_cols=265 Identities=15% Similarity=0.152 Sum_probs=212.8
Q ss_pred EcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCC
Q 045837 106 DLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFE 185 (527)
Q Consensus 106 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 185 (527)
++++++++. +|..+. .+|++|++++|+|++.....|.++.+|++|+|++|++++..+..|.++.+|++|+|++|.++
T Consensus 37 ~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 37 KGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp ECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 346677765 454443 58999999999999887778999999999999999999887888999999999999999998
Q ss_pred CCcchh-hhc-cccchhhccccccccccc-cccC-CCCcceEeccCCc-CCccCCCCCCCCCCCcEEEcccCCCCCCChh
Q 045837 186 GEVPRE-LFK-MKLDAIFLNNNRFSSWIP-ETIG-ESTVSVVTFAHNN-FSGCVPRSIGNMPNVNEIILSNNDLMGCLPS 260 (527)
Q Consensus 186 ~~~p~~-~~~-~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 260 (527)
.++.. +.. .+|++|+|++|++++... ..+. ..+|++|++++|. +.+..+..|.++.+|++|++++|.+++..+.
T Consensus 114 -~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 114 -NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp -SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred -cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 55555 433 699999999999987554 3443 4679999999994 6666677899999999999999999988888
Q ss_pred hccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhh---hCCCCCcEEEecCcccCCC----CCCC
Q 045837 261 EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQI---CKLPNINNFTFSYNYFQGL----GNEC 333 (527)
Q Consensus 261 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~~----~~~~ 333 (527)
.+..+++|++|++++|+++......+..+.+|++|+|++|.+++.....+ .....++.+++++|.+.+. ++..
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~ 272 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH
Confidence 99999999999999999874433345568899999999999987654433 3466788999999988762 3445
Q ss_pred CCCCCCCceecCCCCCCCCCCCCCCC----CcccccccCCCCCCC
Q 045837 334 IPGSKEGGVFDDTSNCLAQRPSQKWA----TTCSPVVSNPVDCSK 374 (527)
Q Consensus 334 ~~~l~~L~~L~l~~N~l~~~~~~~~~----~~~~~~~~np~~C~~ 374 (527)
+..+.+|+.|++++|.|+.++...+. -....+.+|+|.|+.
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 77889999999999999988765422 234567899999973
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.2e-26 Score=244.18 Aligned_cols=253 Identities=17% Similarity=0.156 Sum_probs=217.6
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 175 (527)
+..+++|+.|++++|.+.+ ++..+..+ +|++|++++|++. .++. ..+.+|++|++++|.+.+.... ..+.+|+
T Consensus 278 ~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~ 350 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLE 350 (570)
T ss_dssp TGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCC
T ss_pred hcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCC
Confidence 4567888999999998875 66777777 8999999999888 3433 5678899999999988765544 6789999
Q ss_pred EEecccCCCCCCc--chhhhc-cccchhhccccccccccccccCCCCcceEeccCCcCCccCC-CCCCCCCCCcEEEccc
Q 045837 176 YLDLRYNNFEGEV--PRELFK-MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVP-RSIGNMPNVNEIILSN 251 (527)
Q Consensus 176 ~L~Ls~n~i~~~~--p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~ 251 (527)
+|++++|.+++.. +..+.. .+|++|++++|.+.+.........+|++|++++|.+.+..+ ..+.++.+|++|++++
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC
Confidence 9999999998443 344444 79999999999998866654455679999999999997765 5688999999999999
Q ss_pred CCCCCCChhhccCCCCCCEEEccCCccc-ccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCC
Q 045837 252 NDLMGCLPSEIGWLKKLTVFDASSNSFY-GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLG 330 (527)
Q Consensus 252 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 330 (527)
|.+.+..+..+.++.+|++|+|++|.++ +.++..+..+.+|++|+|++|++++..+..+.++++|++|++++|++++..
T Consensus 431 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence 9999888889999999999999999997 578889999999999999999999988999999999999999999999998
Q ss_pred CCCCCCCCCCceecCCCCCCCCCCC
Q 045837 331 NECIPGSKEGGVFDDTSNCLAQRPS 355 (527)
Q Consensus 331 ~~~~~~l~~L~~L~l~~N~l~~~~~ 355 (527)
+..|..+.+|+.|++++|.+++...
T Consensus 511 ~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 511 DGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HHHhhcccCCcEEEecCCcccCCCc
Confidence 8889999999999999999987543
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.6e-25 Score=232.92 Aligned_cols=243 Identities=20% Similarity=0.299 Sum_probs=118.3
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCC----------
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP---------- 165 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------- 165 (527)
+..+.+|++|+|++|.+.+..+ +.++++|++|+|++|++.+... +.++.+|++|++++|.+.+...
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L 161 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQL 161 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEE
T ss_pred hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEe
Confidence 3445566666666666655432 5566666666666666554322 5555566666665555542110
Q ss_pred ---------cccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCC-----
Q 045837 166 ---------NVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFS----- 231 (527)
Q Consensus 166 ---------~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~----- 231 (527)
..+.++.+|++|++++|.++ .+.......+|++|++++|.+.+..+ .....+|++|++++|++.
T Consensus 162 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l 239 (466)
T 1o6v_A 162 SFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTL 239 (466)
T ss_dssp EEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGG
T ss_pred ecCCcccCchhhccCCCCCEEECcCCcCC-CChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhh
Confidence 11334455555555555554 22221111455555555555544332 111233444444444444
Q ss_pred -----------------ccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045837 232 -----------------GCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHR 294 (527)
Q Consensus 232 -----------------~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 294 (527)
+..+ +..+.+|++|++++|.+++..+ +..+.+|++|+|++|++++..+ +..+.+|++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 3221 3444444444444444442211 4444555555555555443221 444555555
Q ss_pred EeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837 295 LVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 295 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
|+|++|++++..+ +..+++|++|++++|++++. ..+..+.+|+.|++++|.+++..
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCG
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccc
Confidence 5555555554433 44555555555555555554 24555566666666666665443
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=3e-25 Score=232.53 Aligned_cols=246 Identities=23% Similarity=0.308 Sum_probs=176.2
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccc-------------------ccccCCCCCcEEEee
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP-------------------ESLSNWKLIYEFDVS 156 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-------------------~~~~~l~~L~~L~Ls 156 (527)
+..+.+|++|+|++|.+.+.. .+.++++|++|++++|++.+... ..+.++.+|++|+++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred hcCCCCCCEEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence 445666777777777666542 25566666666666655543210 113444555555555
Q ss_pred cCcCcccCCccccc----------------------CCcccEEecccCCCCCCcchhhhccccchhhccccccccccccc
Q 045837 157 NNRLVGSFPNVCLS----------------------WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPET 214 (527)
Q Consensus 157 ~n~l~~~~~~~~~~----------------------l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~ 214 (527)
+|.+.+. ..+.. +.+|++|++++|.++ .+.......+|++|++++|.+.+... .
T Consensus 186 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~-~ 261 (466)
T 1o6v_A 186 SNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAP-L 261 (466)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred CCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc-cchhhhcCCCCCEEECCCCccccchh-h
Confidence 5555432 12334 445555555555554 22221122567777777777776544 3
Q ss_pred cCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcE
Q 045837 215 IGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHR 294 (527)
Q Consensus 215 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 294 (527)
....+|++|++++|.+.+... +..+.+|++|+|++|.+++..+ +..+.+|++|+|++|++++..+ +..+.+|++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 344679999999999997644 8899999999999999996543 7899999999999999997654 788999999
Q ss_pred EeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCCC
Q 045837 295 LVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQK 357 (527)
Q Consensus 295 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 357 (527)
|++++|++++. ..+.++++|++|++++|++++..+ +..+.+|+.|++++|.+++.+...
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCBCC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCchhh
Confidence 99999999986 578999999999999999998876 888999999999999999876544
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.3e-26 Score=240.71 Aligned_cols=218 Identities=19% Similarity=0.161 Sum_probs=131.2
Q ss_pred CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837 98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL 177 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 177 (527)
.+.+|+.|+|++|.+.+..+..|..+++|++|+|++|.|++..+ |.++.+|++|+|++|.|++. ....+|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEE
Confidence 34467777777777766666667777777777777777765543 66667777777777766632 223566666
Q ss_pred ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837 178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC 257 (527)
Q Consensus 178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 257 (527)
+|++|.+++... .. ..+|++|+|++|.+.+..+..|+.+.+|++|+|++|.+++.
T Consensus 105 ~L~~N~l~~~~~-----------------------~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 105 HAANNNISRVSC-----------------------SR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp ECCSSCCCCEEE-----------------------CC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred ECcCCcCCCCCc-----------------------cc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence 666666653222 11 12455666666666655555566666666666666666655
Q ss_pred Chhhcc-CCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCC
Q 045837 258 LPSEIG-WLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG 336 (527)
Q Consensus 258 ~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (527)
.+..+. .+.+|++|+|++|.+++.. .+..+.+|++|+|++|.|++..+. +..+.+|++|+|++|.|+++ +..+..
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~ 235 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRF 235 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCC
T ss_pred ChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhcc
Confidence 555554 5666666666666665441 233456666666666666654333 55666666666666666653 334555
Q ss_pred CCCCceecCCCCCCC
Q 045837 337 SKEGGVFDDTSNCLA 351 (527)
Q Consensus 337 l~~L~~L~l~~N~l~ 351 (527)
+.+|+.|++++|.+.
T Consensus 236 l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 236 SQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCEEECTTCCBC
T ss_pred CCCCCEEEcCCCCCc
Confidence 666666666666665
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.2e-27 Score=234.74 Aligned_cols=238 Identities=19% Similarity=0.209 Sum_probs=201.6
Q ss_pred CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837 98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL 177 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 177 (527)
.+++|++|+|++|.+.+..+..|.++++|++|+|++|++.+..+ |.++.+|++|+|++|++++. ..+.+|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEE
Confidence 45789999999999999888899999999999999999987654 89999999999999999843 345899999
Q ss_pred ecccCCCCCCcchhhhccccchhhccccccccccccccC-CCCcceEeccCCcCCccCCCCC-CCCCCCcEEEcccCCCC
Q 045837 178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNNFSGCVPRSI-GNMPNVNEIILSNNDLM 255 (527)
Q Consensus 178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~ 255 (527)
++++|.+++..... ..+|++|++++|++++.....++ ..+|++|++++|.+.+.....+ ..+.+|++|+|++|.++
T Consensus 105 ~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp ECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 99999998443322 36899999999999987776665 4679999999999998766666 47899999999999998
Q ss_pred CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccC-CCCCCCC
Q 045837 256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ-GLGNECI 334 (527)
Q Consensus 256 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~ 334 (527)
+. + ....+.+|++|+|++|++++. +..+..+.+|++|+|++|+|++ ++..+..+++|++|++++|.+. +..+..+
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 183 DV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred cc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 54 3 344689999999999999854 4568899999999999999995 5677889999999999999998 5556667
Q ss_pred CCCCCCceecCCCC
Q 045837 335 PGSKEGGVFDDTSN 348 (527)
Q Consensus 335 ~~l~~L~~L~l~~N 348 (527)
..+.+|+.|+++++
T Consensus 259 ~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 259 SKNQRVQTVAKQTV 272 (317)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred hccccceEEECCCc
Confidence 78888999888743
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=7.3e-25 Score=237.90 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=114.7
Q ss_pred eEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC-CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCC
Q 045837 222 VVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM-GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN 300 (527)
Q Consensus 222 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 300 (527)
.+++++|.+.+..+..+..+..|++|+|++|.+. +..+..|..+++|++|||++|++++..+..|.++.+|++|+|++|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence 3344444444445566778899999999999754 456778999999999999999999988999999999999999999
Q ss_pred CCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC-CCCceecCCCCCCCCC
Q 045837 301 QLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS-KEGGVFDDTSNCLAQR 353 (527)
Q Consensus 301 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~ 353 (527)
+|++..+..|.++++|++|+|++|+|++..+..+..+ .+|++|++++|.++.-
T Consensus 529 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999989999999999999999999999999999888 6899999999998753
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.1e-25 Score=222.61 Aligned_cols=208 Identities=14% Similarity=0.213 Sum_probs=173.6
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCccccc-----
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLS----- 170 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----- 170 (527)
+..+++|++|+|++|.+. .++..++++++|++|+|++|+|. .++..|.++.+|++|+|++|++.+.++..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 345789999999999998 68889999999999999999999 77889999999999999999888888877654
Q ss_pred ----CCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcE
Q 045837 171 ----WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNE 246 (527)
Q Consensus 171 ----l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 246 (527)
+.+|++|+|++|.++ .++..+.. ..+|++|+|++|++.+ ++..++.+.+|++
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~----------------------l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIAN----------------------LQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGG----------------------CTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcC----------------------CCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 888888888888887 56544332 2356677777777764 4456788888999
Q ss_pred EEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCccc
Q 045837 247 IILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYF 326 (527)
Q Consensus 247 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 326 (527)
|+|++|.+.+.++..++++.+|++|+|++|++.+.++..+..+.+|++|+|++|.+.+.++..+.++++|+.+++..|.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99999888888888888889999999999888888888888889999999999988888898999999999999888866
Q ss_pred CCC
Q 045837 327 QGL 329 (527)
Q Consensus 327 ~~~ 329 (527)
...
T Consensus 314 ~~l 316 (328)
T 4fcg_A 314 AQL 316 (328)
T ss_dssp CC-
T ss_pred HHH
Confidence 554
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2e-24 Score=225.25 Aligned_cols=188 Identities=15% Similarity=0.215 Sum_probs=97.3
Q ss_pred CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837 97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY 176 (527)
Q Consensus 97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 176 (527)
..+++|++|+|++|.+++. .++.+++|++|++++|+|++. .|+++.+|++|++++|++++. .+..+.+|++
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l---~~~~l~~L~~ 131 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL---DVSQNPLLTY 131 (457)
T ss_dssp GGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCC---CCTTCTTCCE
T ss_pred cccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCee---cCCCCCcCCE
Confidence 3445555555555555553 255555555555555555543 255555555555555555542 1455555555
Q ss_pred EecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837 177 LDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG 256 (527)
Q Consensus 177 L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 256 (527)
|++++|.+++ ++ .....+|++|++++|...+.+ ......+|++|++++|++++. + ++.+.+|++|++++|.+++
T Consensus 132 L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 132 LNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp EECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSC
T ss_pred EECCCCccce-ec-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCe
Confidence 5555555553 21 111145555555555433322 111223455566665555542 1 5555556666666665553
Q ss_pred CChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc
Q 045837 257 CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY 305 (527)
Q Consensus 257 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 305 (527)
. .++.+.+|++|+|++|++++ ++ +..+.+|++|+|++|++++.
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 3 25555556666666666554 33 55555566666666665554
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.9e-26 Score=228.69 Aligned_cols=223 Identities=16% Similarity=0.180 Sum_probs=181.9
Q ss_pred eEEEEEcCCCCcC-CCCccccC-------CCCCCCEEEccCCcccccccccc--cCCCCCcEEEeecCcCcccCCccccc
Q 045837 101 VVAGIDLNGNDIA-GYFPAELG-------WLSDLALFHVNSNRFCGIIPESL--SNWKLIYEFDVSNNRLVGSFPNVCLS 170 (527)
Q Consensus 101 ~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~ 170 (527)
.|+.|+|++|.+. ..++..+. ++++|++|+|++|+|++.++..+ .++.+|++|+|++|++++. +..+..
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 3788899999884 34555554 78999999999999998888776 8899999999999999976 777776
Q ss_pred C-----CcccEEecccCCCCCCcchhhhc-cccchhhccccccccccc---cc--cCCCCcceEeccCCcCCcc---CCC
Q 045837 171 W-----TSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIP---ET--IGESTVSVVTFAHNNFSGC---VPR 236 (527)
Q Consensus 171 l-----~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~---~~--~~~~~L~~L~L~~n~l~~~---~~~ 236 (527)
+ .+|++|+|++|.+++..+..+.. .+|++|+|++|++.+... .. ....+|++|++++|++.+. ...
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 6 89999999999998655555555 689999999999876421 11 2346799999999999842 223
Q ss_pred CCCCCCCCcEEEcccCCCCCCCh-hhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837 237 SIGNMPNVNEIILSNNDLMGCLP-SEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN 315 (527)
Q Consensus 237 ~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 315 (527)
.+.++.+|++|+|++|.+++..+ ..+..+.+|++|+|++|+++ .++..+. .+|++|+|++|+|++. +. +..+++
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 34577899999999999997664 45677899999999999998 7777766 8999999999999987 44 889999
Q ss_pred CcEEEecCcccCCC
Q 045837 316 INNFTFSYNYFQGL 329 (527)
Q Consensus 316 L~~L~Ls~N~l~~~ 329 (527)
|++|++++|.|++.
T Consensus 298 L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 298 VGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEECTTCTTTCC
T ss_pred CCEEeccCCCCCCC
Confidence 99999999999864
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.2e-26 Score=240.82 Aligned_cols=213 Identities=14% Similarity=0.067 Sum_probs=166.2
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 175 (527)
+..+++|+.|+|++|.+.+..+ |..+++|++|+|++|.|++.. ...+|++|+|++|.+++.... .+.+|+
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~---~l~~L~ 123 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKK 123 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCCCEEEC---CCSSCE
T ss_pred HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcCCcCCCCCcc---ccCCCC
Confidence 5678899999999999988654 899999999999999998543 348999999999999976543 458899
Q ss_pred EEecccCCCCCCcchhhhc-cccchhhccccccccccccccC--CCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837 176 YLDLRYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIG--ESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN 252 (527)
Q Consensus 176 ~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 252 (527)
+|+|++|.+++..+..+.. .+|++|+|++|.+++..+..+. ..+|++|+|++|.+.+.. .+..+.+|++|+|++|
T Consensus 124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSN 201 (487)
T ss_dssp EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSS
T ss_pred EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCC
Confidence 9999999999766655554 6888888888888887666653 456888888888887653 2345778888888888
Q ss_pred CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCC-CcchhhhhCCCCCcEEEec
Q 045837 253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLT-GYVSEQICKLPNINNFTFS 322 (527)
Q Consensus 253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~Ls 322 (527)
.+++.. ..+..+.+|+.|+|++|.+++ ++..+..+.+|+.|+|++|.+. +.++.++..+..|+.|+++
T Consensus 202 ~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 202 KLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 887543 347778888888888888874 5666777788888888888877 5566667777777777765
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.1e-24 Score=209.98 Aligned_cols=206 Identities=15% Similarity=0.101 Sum_probs=117.0
Q ss_pred CCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhcc
Q 045837 124 SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLN 203 (527)
Q Consensus 124 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~ 203 (527)
.+|++|+|++|+|++.....|.++.+|++|+|++|++++.....|.++.+|++|+|++|.+++..+..+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------- 97 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS---------- 97 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc----------
Confidence 3466666666666655555566666666666666666555444555666666666666665522111111
Q ss_pred ccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC-ChhhccCCCCCCEEEccCCcccccC
Q 045837 204 NNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC-LPSEIGWLKKLTVFDASSNSFYGSV 282 (527)
Q Consensus 204 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~ 282 (527)
...+|++|++++|++.+.....++.+.+|++|++++|.+++. ++..+.++++|++|+|++|++++..
T Consensus 98 ------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 98 ------------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp ------------TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ------------CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 112344444444444444333455666666666666666542 4556666666666666666666554
Q ss_pred CcccCCCCCCc----EEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837 283 PQSFSSLESIH----RLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 283 p~~~~~l~~L~----~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 352 (527)
...+..+.+|+ +|++++|.+++.....+.. .+|++|++++|++++.....|..+.+|+.|++++|.++.
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 44554444444 6666666666544443332 356666676666666655556666666677777666664
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.5e-24 Score=224.43 Aligned_cols=237 Identities=14% Similarity=0.131 Sum_probs=146.3
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 175 (527)
+..+++|++|+|++|.+++. .++++++|++|++++|++++. .++++.+|++|++++|++++. .+..+.+|+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~ 151 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLT 151 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCC
T ss_pred cccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCC
Confidence 45667777777777777764 267777777777777777754 267777777777777777653 255666666
Q ss_pred EEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC
Q 045837 176 YLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM 255 (527)
Q Consensus 176 ~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 255 (527)
+|++++|...+.+. .....+|++|++++|++++.. .....+|++|++++|++.+. .++.+.+|++|++++|+++
T Consensus 152 ~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 152 ELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp EEECTTCSCCCCCC-CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS
T ss_pred EEECCCCCcccccc-cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc
Confidence 66666664433441 111246666666666666532 22233456666666665543 2555555666666666655
Q ss_pred CCChhhccCCCCCCEEEccCCcccccCCcc-----------------------------cCCCCCCcEEeccCCCCCCcc
Q 045837 256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQS-----------------------------FSSLESIHRLVLSYNQLTGYV 306 (527)
Q Consensus 256 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-----------------------------~~~l~~L~~L~Ls~N~l~~~~ 306 (527)
+ ++ ++.+.+|++|++++|++++..... +..+.+|+.|+|++|.+.+.+
T Consensus 226 ~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 226 E-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp C-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEE
T ss_pred c-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCccccee
Confidence 4 33 555555555555555555432222 233456666666666554433
Q ss_pred hh--------hhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837 307 SE--------QICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR 353 (527)
Q Consensus 307 ~~--------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 353 (527)
+. .+.++++|++|++++|+|+++ .+.++.+|+.|++++|.|+++
T Consensus 303 ~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 303 DCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC
T ss_pred ccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc
Confidence 32 245667888888888888885 377888888888888888864
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3e-24 Score=208.87 Aligned_cols=207 Identities=16% Similarity=0.147 Sum_probs=174.9
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
.+|++|+|++|.+++.....|.++++|++|+|++|+|.+.....|.++.+|++|+|++|++++..+..|.++.+|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46999999999999887778999999999999999999888888999999999999999999887788999999999999
Q ss_pred ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCcc-CCCCCCCCCCCcEEEcccCCCCCCC
Q 045837 180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGC-VPRSIGNMPNVNEIILSNNDLMGCL 258 (527)
Q Consensus 180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~ 258 (527)
++|.+++.....+. ...+|++|++++|.+.+. ++..|.++.+|++|+|++|.+++..
T Consensus 108 ~~n~l~~~~~~~~~----------------------~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 108 VETNLASLENFPIG----------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTSCCCCSTTCCCT----------------------TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCccccCchhcc----------------------cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 99998732221111 224578888888887763 5778899999999999999999777
Q ss_pred hhhccCCCCCC----EEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837 259 PSEIGWLKKLT----VFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329 (527)
Q Consensus 259 p~~~~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 329 (527)
...+..+.+|+ +|++++|.+++.....+. ..+|++|+|++|+|++.....+.++.+|++|++++|.+.+.
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 77777776666 899999999866555554 45899999999999988777889999999999999999864
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=2.2e-24 Score=224.70 Aligned_cols=232 Identities=16% Similarity=0.218 Sum_probs=102.0
Q ss_pred cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCC-------------cEEEeecCcCcccCC
Q 045837 99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLI-------------YEFDVSNNRLVGSFP 165 (527)
Q Consensus 99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~~ 165 (527)
.++|++|++++|.+ +.+|..++++++|++|++++|++.+.++..++++.+| ++|++++|.+++ ++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 35566666666666 5566666666666666666666666666666655543 666666666553 22
Q ss_pred cccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCc
Q 045837 166 NVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVN 245 (527)
Q Consensus 166 ~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 245 (527)
.. ..+|++|++++|.+++ ++..+ .+|++|++++|++++... . ..+|++|++++|++.+ ++ .|+++.+|+
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~~--~~L~~L~l~~n~l~~l~~-~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~ 156 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPELP--QSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQLEK-LP-ELQNSSFLK 156 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCCC--TTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred CC---cCCCCEEEccCCcCCc-ccccc--CCCcEEECCCCccCcccC-C--CCCCCEEECcCCCCCC-Cc-ccCCCCCCC
Confidence 21 2455666666665553 43321 455555555555544211 0 0245555555555553 33 355555555
Q ss_pred EEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC-------------------cc
Q 045837 246 EIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG-------------------YV 306 (527)
Q Consensus 246 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-------------------~~ 306 (527)
+|++++|.+++ ++.. ..+|++|++++|++++ ++ .+.++.+|++|++++|++++ .+
T Consensus 157 ~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~l 230 (454)
T 1jl5_A 157 IIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL 230 (454)
T ss_dssp EEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSC
T ss_pred EEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcc
Confidence 55555555542 3322 1345555555555543 22 34444444444444444443 22
Q ss_pred hhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837 307 SEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 307 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
+ .+.++++|++|++++|+++++.. ...+|+.|++++|.+++++
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCC
T ss_pred c-ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccC
Confidence 2 24455555555555555554321 1244555555555555443
No 67
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.5e-25 Score=225.29 Aligned_cols=250 Identities=17% Similarity=0.180 Sum_probs=192.8
Q ss_pred EEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccc----ccccCCC-CCcEEEeecCcCcccCCcccccC-----Cc
Q 045837 104 GIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP----ESLSNWK-LIYEFDVSNNRLVGSFPNVCLSW-----TS 173 (527)
Q Consensus 104 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~ 173 (527)
.++|++|++++.++..+...++|++|+|++|+|.+... +.|.++. +|++|+|++|++++.....+..+ .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788889988888777777789999999999987665 6778888 89999999999987666666554 88
Q ss_pred ccEEecccCCCCCCcchhhhc------cccchhhccccccccccccccC------CCCcceEeccCCcCCccCC----CC
Q 045837 174 LRYLDLRYNNFEGEVPRELFK------MKLDAIFLNNNRFSSWIPETIG------ESTVSVVTFAHNNFSGCVP----RS 237 (527)
Q Consensus 174 L~~L~Ls~n~i~~~~p~~~~~------~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~L~~n~l~~~~~----~~ 237 (527)
|++|+|++|.+++.....+.. .+|++|+|++|++++.....+. ..+|++|+|++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998655554333 4899999999998876554432 2479999999999985332 23
Q ss_pred CCCCC-CCcEEEcccCCCCCCChhhc----cCC-CCCCEEEccCCccccc----CCcccCC-CCCCcEEeccCCCCCCcc
Q 045837 238 IGNMP-NVNEIILSNNDLMGCLPSEI----GWL-KKLTVFDASSNSFYGS----VPQSFSS-LESIHRLVLSYNQLTGYV 306 (527)
Q Consensus 238 l~~l~-~L~~L~Ls~N~l~~~~p~~~----~~l-~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~~ 306 (527)
+..+. +|++|+|++|.+++.....+ ..+ ++|++|||++|.+++. +...+.. ..+|++|+|++|.|++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34454 89999999999987766444 344 6999999999999853 3344444 458999999999998765
Q ss_pred h----hhhhCCCCCcEEEecCcccCCCCC-------CCCCCCCCCceecCCCCCCCCC
Q 045837 307 S----EQICKLPNINNFTFSYNYFQGLGN-------ECIPGSKEGGVFDDTSNCLAQR 353 (527)
Q Consensus 307 ~----~~l~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~l~~N~l~~~ 353 (527)
. ..+..+.+|++|+|++|.+.++.. ..+..+.+|+.||+++|.|...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 344677899999999999665543 3577888999999999998754
No 68
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=3.6e-23 Score=198.38 Aligned_cols=191 Identities=16% Similarity=0.238 Sum_probs=123.1
Q ss_pred CCccccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcC
Q 045837 81 DVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL 160 (527)
Q Consensus 81 ~~c~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 160 (527)
++|.|.|..|. ...++++++++.+.. ++..+. .+|++|+|++|+|.+..+..|.++.+|++|+|++|++
T Consensus 3 ~Cp~~~gC~C~--------~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 3 TCETVTGCTCN--------EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71 (251)
T ss_dssp -CHHHHSSEEE--------GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCceEcC--------CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence 56788899994 245689999999876 444444 6899999999999988888899999999999999999
Q ss_pred cccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCC
Q 045837 161 VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGN 240 (527)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 240 (527)
++..+..|..+.+|++|+|++|.++ .++...+. ...+|++|+|++|++.+.....|..
T Consensus 72 ~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~---------------------~l~~L~~L~L~~N~l~~~~~~~~~~ 129 (251)
T 3m19_A 72 QTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFD---------------------HLTQLDKLYLGGNQLKSLPSGVFDR 129 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTT---------------------TCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CccCHhHhccCCcCCEEECCCCccc-ccChhHhc---------------------ccCCCCEEEcCCCcCCCcChhHhcc
Confidence 8877777888889999999888887 22211100 1123444444444444443334455
Q ss_pred CCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC
Q 045837 241 MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG 304 (527)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 304 (527)
+.+|++|+|++|.+++..+..|+.+.+|++|+|++|++++..+..|..+.+|++|+|++|.+++
T Consensus 130 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 5555555555555554434345555555555555555554444445555555555555555544
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=4.7e-23 Score=201.84 Aligned_cols=202 Identities=15% Similarity=0.192 Sum_probs=127.7
Q ss_pred CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837 98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL 177 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 177 (527)
.+.+++.|++++++++. ++..+. ++|++|+|++|+|.+..+..|.++.+|++|+|++|.+++... ...+.+|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 45677888888888775 343332 578888888888887777778888888888888888774422 2567777777
Q ss_pred ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837 178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC 257 (527)
Q Consensus 178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 257 (527)
+|++|.++ .++..+. ...+|++|++++|++.+..+..|.++.+|++|+|++|++++.
T Consensus 83 ~Ls~N~l~-~l~~~~~----------------------~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQ----------------------TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp ECCSSCCS-SCCCCTT----------------------TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred ECCCCcCC-cCchhhc----------------------cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 77777776 3332211 123455555666655555445566666666666666666655
Q ss_pred ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837 258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328 (527)
Q Consensus 258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 328 (527)
.+..|..+.+|++|+|++|++++.....|..+.+|++|+|++|+|+ .++..+..+.+|++|+|++|.+..
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 4555566666666666666666444444556666666666666666 334445555566666666666543
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.8e-23 Score=201.62 Aligned_cols=206 Identities=18% Similarity=0.194 Sum_probs=124.1
Q ss_pred CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837 98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL 177 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 177 (527)
.+.+|+.|++++|.+... ..+..+++|++|+|++|++.+. ..+.++.+|++|+|++|++++..+..|.++.+|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 445677777777776643 2466677777777777777653 356677777777777777776555556667777777
Q ss_pred ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837 178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC 257 (527)
Q Consensus 178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 257 (527)
+|++|.+++..+..+. ...+|++|++++|++.+.....|..+.+|++|++++|.+++.
T Consensus 115 ~L~~n~l~~~~~~~~~----------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFD----------------------KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp ECTTSCCCCCCTTTTT----------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCcCCccCHHHhc----------------------cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 7777766522111110 123455555555555544444556666666666666666655
Q ss_pred ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCC
Q 045837 258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG 336 (527)
Q Consensus 258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (527)
.+..++.+.+|++|+|++|++++..+..+..+.+|++|+|++|.+.+ .+++|+.|++.+|+++|.++..+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 55555666666666666666665555555666666666666666553 2334556666666666665554443
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.6e-22 Score=195.96 Aligned_cols=199 Identities=19% Similarity=0.202 Sum_probs=164.1
Q ss_pred ccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcC
Q 045837 85 YYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL 160 (527)
Q Consensus 85 ~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 160 (527)
+..+.|..... ..-..+++.|+|++|++.++....|.++++|++|+|++|+|+.+....|.++.+|++|+|++|++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred CCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 45566653221 11235699999999999988777899999999999999999987777789999999999999999
Q ss_pred cccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCC
Q 045837 161 VGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGN 240 (527)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 240 (527)
++.....|.++.+|++|+|++|.+++..+..+. ...+|++|+|++|++.+.....|..
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------------~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD----------------------SLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT----------------------TCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CcCCHhHcccccCCCEEECCCCccCeeCHHHhC----------------------cCcCCCEEECCCCcCCccCHhHccC
Confidence 977777888999999999999999833222111 2246788888888888766667899
Q ss_pred CCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc
Q 045837 241 MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY 305 (527)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 305 (527)
+.+|++|+|++|.+++..+..|.++.+|++|+|++|++++.....|..+.+|+.|+|++|.+...
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 99999999999999977777799999999999999999977666788999999999999998753
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.2e-22 Score=199.05 Aligned_cols=205 Identities=16% Similarity=0.152 Sum_probs=171.5
Q ss_pred ccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccc
Q 045837 119 ELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLD 198 (527)
Q Consensus 119 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~ 198 (527)
.+.++.+|++|++++|+++. ++..+. .+|++|+|++|++++..+..|..+.+|++|+|++|.|+ .++..
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~------- 73 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD------- 73 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-------
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-------
Confidence 36678889999999998884 444443 67899999999998777778888999999999999887 22211
Q ss_pred hhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcc
Q 045837 199 AIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSF 278 (527)
Q Consensus 199 ~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 278 (527)
....+|++|+|++|++. .++..+..+.+|++|+|++|++++..+..|.++.+|++|+|++|++
T Consensus 74 ----------------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 74 ----------------GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp ----------------SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred ----------------CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 12346888888888887 5667788999999999999999977778899999999999999999
Q ss_pred cccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837 279 YGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 279 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 352 (527)
++..+..|..+.+|+.|+|++|+|+++....+.++.+|++|+|++|+|+.+ +..+..+.+|+.|++++|.+..
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence 977777788999999999999999988777888999999999999999965 5566777899999999999864
No 73
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.6e-22 Score=210.61 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=74.0
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
++|++|+|++|.+++ ++ .|+++++|++|++++|++++ ++.. ..+|++|++++|++++ ++ .+.++.+|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 567788888887776 44 57777888888888877775 3332 2467777777777764 33 4666777777777
Q ss_pred ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCc
Q 045837 180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSG 232 (527)
Q Consensus 180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~ 232 (527)
++|.+++ ++... .+|++|++++|.+.. ++......+|++|++++|++.+
T Consensus 203 ~~N~l~~-l~~~~--~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 203 DNNSLKK-LPDLP--LSLESIVAGNNILEE-LPELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CSSCCSS-CCCCC--TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS
T ss_pred CCCcCCc-CCCCc--CcccEEECcCCcCCc-ccccCCCCCCCEEECCCCcCCc
Confidence 7777663 33221 356666666666553 3332223345555555555553
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=1.2e-22 Score=218.28 Aligned_cols=220 Identities=19% Similarity=0.201 Sum_probs=107.3
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
++|+.|+|++|.++. ++. .+++|++|+|++|+|++ ++. .+.+|++|+|++|.+++. +. .+.+|++|+|
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEEC
Confidence 455666666666554 222 34566666666666553 222 455666666666666532 22 3456666666
Q ss_pred ccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCCh
Q 045837 180 RYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLP 259 (527)
Q Consensus 180 s~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 259 (527)
++|+++ .++..+ .+|++|+|++|.+++.. . ...+|++|++++|.+.+. + ..+.+|++|+|++|.+++ ++
T Consensus 129 ~~N~l~-~lp~~l--~~L~~L~Ls~N~l~~l~-~--~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~ 197 (622)
T 3g06_A 129 FGNQLT-SLPVLP--PGLQELSVSDNQLASLP-A--LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LP 197 (622)
T ss_dssp CSSCCS-CCCCCC--TTCCEEECCSSCCSCCC-C--CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CC
T ss_pred CCCCCC-cCCCCC--CCCCEEECcCCcCCCcC-C--ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CC
Confidence 666665 344322 56666666666665521 1 112355555555555432 2 233566666666666653 22
Q ss_pred hhcc-----------------CCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEec
Q 045837 260 SEIG-----------------WLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFS 322 (527)
Q Consensus 260 ~~~~-----------------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 322 (527)
..+. .+.+|++|+|++|+|++ ++ ..+.+|++|+|++|+|+++ +. .+.+|++|+|+
T Consensus 198 ~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls 269 (622)
T 3g06_A 198 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVY 269 (622)
T ss_dssp CCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECC
T ss_pred CccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCC
Confidence 2110 11334444444444442 22 2234444555555544432 21 33445555555
Q ss_pred CcccCCCCCCCCCCCCCCceecCCCCCCC
Q 045837 323 YNYFQGLGNECIPGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 351 (527)
+|+|+.+ +..+.++.+|+.|++++|.|+
T Consensus 270 ~N~L~~l-p~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 270 RNQLTRL-PESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp SSCCCSC-CGGGGGSCTTCEEECCSCCCC
T ss_pred CCCCCcC-CHHHhhccccCEEEecCCCCC
Confidence 5555422 334444555555555555544
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.5e-22 Score=192.61 Aligned_cols=196 Identities=13% Similarity=0.098 Sum_probs=114.9
Q ss_pred CCCEEEccCCcccccccccccCCCCCcEEEeecCc-CcccCCcccccCCcccEEeccc-CCCCCCcchhhhccccchhhc
Q 045837 125 DLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR-LVGSFPNVCLSWTSLRYLDLRY-NNFEGEVPRELFKMKLDAIFL 202 (527)
Q Consensus 125 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~p~~~~~~~L~~L~L 202 (527)
+|++|+|++|+|+++....|.++.+|++|+|++|+ ++......|.++.+|++|+|++ |.++ .++...+.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~-------- 102 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALK-------- 102 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEE--------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhC--------
Confidence 56666666666665555566666666666666665 5544444566666666666666 6665 22211110
Q ss_pred cccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCc---EEEcccC-CCCCCChhhccCCCCCC-EEEccCCc
Q 045837 203 NNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVN---EIILSNN-DLMGCLPSEIGWLKKLT-VFDASSNS 277 (527)
Q Consensus 203 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~n~ 277 (527)
+..+|++|++++|++.+ ++. |..+.+|+ +|++++| .+++.....|.++.+|+ +|++++|+
T Consensus 103 -------------~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 103 -------------ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp -------------CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred -------------CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 11234444444444443 222 44555555 7777777 66655555566777777 77777777
Q ss_pred ccccCCcccCCCCCCcEEeccCCC-CCCcchhhhhCC-CCCcEEEecCcccCCCCCCCCCCCCCCceecCCCC
Q 045837 278 FYGSVPQSFSSLESIHRLVLSYNQ-LTGYVSEQICKL-PNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSN 348 (527)
Q Consensus 278 l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 348 (527)
++ .++.......+|++|+|++|+ ++++....|.++ .+|++|++++|+++++... .+.+|+.|+++++
T Consensus 168 l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 168 FT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred Cc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 76 333332223677777777774 766556667777 7777777777777765443 4556666666654
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=5.3e-23 Score=199.68 Aligned_cols=219 Identities=15% Similarity=0.134 Sum_probs=170.7
Q ss_pred cceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEe
Q 045837 99 ITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLD 178 (527)
Q Consensus 99 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 178 (527)
+..+..+++.++.+.+. ..+..+++|++|++++|.+... ..+..+++|++|+|++|.+++. ..+..+.+|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 34455666777666554 2455678888888888887743 2477788888888888888753 3667778888888
Q ss_pred cccCCCCCCcchhhhccccchhhcccccccccccccc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837 179 LRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC 257 (527)
Q Consensus 179 Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 257 (527)
|++|.+++..+ ..+ ...+|++|++++|++.+..+..|+.+.+|++|+|++|.+++.
T Consensus 92 L~~n~l~~~~~-----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 148 (272)
T 3rfs_A 92 LTGNQLQSLPN-----------------------GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148 (272)
T ss_dssp CTTSCCCCCCT-----------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCccCccCh-----------------------hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc
Confidence 88887763222 112 224688888888888877777788999999999999999977
Q ss_pred ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837 258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS 337 (527)
Q Consensus 258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (527)
.+..++.+.+|++|+|++|++++..+..|..+.+|++|+|++|++++..+..+..+++|++|++++|.+.+. +
T Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~ 221 (272)
T 3rfs_A 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------C 221 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------T
T ss_pred CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------C
Confidence 777788999999999999999977777788899999999999999998888889999999999999988754 5
Q ss_pred CCCceecCCCCCCCCC
Q 045837 338 KEGGVFDDTSNCLAQR 353 (527)
Q Consensus 338 ~~L~~L~l~~N~l~~~ 353 (527)
++|+.|++..|.+++.
T Consensus 222 ~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 222 PGIRYLSEWINKHSGV 237 (272)
T ss_dssp TTTHHHHHHHHHTGGG
T ss_pred cHHHHHHHHHHhCCCc
Confidence 5788889888888754
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=3.2e-23 Score=205.14 Aligned_cols=225 Identities=12% Similarity=0.073 Sum_probs=154.0
Q ss_pred ceEEEEEcCCCCcCCCCcc---ccCCCCCCCEEEccCCcccccccccc--cCCCCCcEEEeecCcCcccCC----ccccc
Q 045837 100 TVVAGIDLNGNDIAGYFPA---ELGWLSDLALFHVNSNRFCGIIPESL--SNWKLIYEFDVSNNRLVGSFP----NVCLS 170 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~ 170 (527)
.+++.|++.++.+....-. .+..+.+|++|+|++|++.+..+..+ .++.+|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3567888888777542111 12235679999999999998888887 889999999999999986443 23456
Q ss_pred CCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCcc--C--CCCCCCCCCCcE
Q 045837 171 WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGC--V--PRSIGNMPNVNE 246 (527)
Q Consensus 171 l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~ 246 (527)
+.+|++|+|++|.+.+..+..+.. ..+|++|+|++|++.+. + ...+..+.+|++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~----------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRA----------------------FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN 201 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCC----------------------CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred ccCCCEEEeeCCCcchhhHHHhcc----------------------CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence 889999999999997444333322 12355555555554331 1 122356677888
Q ss_pred EEcccCCCCCCChh----hccCCCCCCEEEccCCcccccCCcccCCC---CCCcEEeccCCCCCCcchhhhhCCCCCcEE
Q 045837 247 IILSNNDLMGCLPS----EIGWLKKLTVFDASSNSFYGSVPQSFSSL---ESIHRLVLSYNQLTGYVSEQICKLPNINNF 319 (527)
Q Consensus 247 L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 319 (527)
|+|++|.++ .++. .++.+.+|++|||++|++++..+..+..+ ++|++|+|++|+|+. ++..+. ++|++|
T Consensus 202 L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L 277 (310)
T 4glp_A 202 LALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVL 277 (310)
T ss_dssp CBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCE
T ss_pred EECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEE
Confidence 888888776 3332 24667788888888888877666666555 578888888888873 444443 578888
Q ss_pred EecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837 320 TFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 352 (527)
+|++|+|+++ + .+..+++|+.|++++|.|+.
T Consensus 278 ~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 278 DLSSNRLNRA-P-QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSCCCCSC-C-CTTSCCCCSCEECSSTTTSC
T ss_pred ECCCCcCCCC-c-hhhhCCCccEEECcCCCCCC
Confidence 8888888775 2 25667788888888888764
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.7e-24 Score=221.18 Aligned_cols=233 Identities=18% Similarity=0.199 Sum_probs=145.3
Q ss_pred CcceEEEEEcCCCCcCCCC----ccccCCCCCCCEEEccCCc---ccccccccc-------cCCCCCcEEEeecCcCcc-
Q 045837 98 NITVVAGIDLNGNDIAGYF----PAELGWLSDLALFHVNSNR---FCGIIPESL-------SNWKLIYEFDVSNNRLVG- 162 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~---i~~~~~~~~-------~~l~~L~~L~Ls~n~l~~- 162 (527)
.+++|++|+|++|.+.+.. ...|..+++|++|+|++|. +.+.++..+ .++.+|++|+|++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 4567888888888887653 2346678888888888853 344444333 677888888888888875
Q ss_pred ---cCCcccccCCcccEEecccCCCCCCcchhhhc--------------cccchhhccccccccc-cc---ccc-CCCCc
Q 045837 163 ---SFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--------------MKLDAIFLNNNRFSSW-IP---ETI-GESTV 220 (527)
Q Consensus 163 ---~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~--------------~~L~~L~L~~n~l~~~-~~---~~~-~~~~L 220 (527)
.++..+..+.+|++|+|++|.+++.....+.. .+|++|+|++|+++.. +. ..+ ...+|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 35556777888888888888876332222222 3677777777766522 21 111 22456
Q ss_pred ceEeccCCcCCc-----cCCCCCCCCCCCcEEEcccCCCC----CCChhhccCCCCCCEEEccCCccccc----CCccc-
Q 045837 221 SVVTFAHNNFSG-----CVPRSIGNMPNVNEIILSNNDLM----GCLPSEIGWLKKLTVFDASSNSFYGS----VPQSF- 286 (527)
Q Consensus 221 ~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~- 286 (527)
++|+|++|++.. ..+..+..+.+|++|+|++|.++ +.++..+..+++|++|+|++|.+++. ++..+
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 677777776662 22235566666777777777664 34555666666677777777766543 23344
Q ss_pred -CCCCCCcEEeccCCCCCC----cchhhh-hCCCCCcEEEecCcccCCCC
Q 045837 287 -SSLESIHRLVLSYNQLTG----YVSEQI-CKLPNINNFTFSYNYFQGLG 330 (527)
Q Consensus 287 -~~l~~L~~L~Ls~N~l~~----~~~~~l-~~l~~L~~L~Ls~N~l~~~~ 330 (527)
+.+.+|++|+|++|.|++ .++..+ .++++|++|++++|.+++..
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 225667777777776665 244444 44666777777777666543
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=6.7e-24 Score=216.73 Aligned_cols=239 Identities=15% Similarity=0.177 Sum_probs=188.8
Q ss_pred CccccCCCCCCCEEEccCCccccc----ccccccCCCCCcEEEeecCcC---cccCCccc-------ccCCcccEEeccc
Q 045837 116 FPAELGWLSDLALFHVNSNRFCGI----IPESLSNWKLIYEFDVSNNRL---VGSFPNVC-------LSWTSLRYLDLRY 181 (527)
Q Consensus 116 ~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~-------~~l~~L~~L~Ls~ 181 (527)
+...+..+++|++|+|++|+|... +...|.++.+|++|+|++|.+ .+.++..+ ..+.+|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 445677889999999999999875 334577899999999999744 34444333 6789999999999
Q ss_pred CCCCCC----cchhhhc-cccchhhccccccccccccccCC--------------CCcceEeccCCcCCc-cCC---CCC
Q 045837 182 NNFEGE----VPRELFK-MKLDAIFLNNNRFSSWIPETIGE--------------STVSVVTFAHNNFSG-CVP---RSI 238 (527)
Q Consensus 182 n~i~~~----~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~--------------~~L~~L~L~~n~l~~-~~~---~~l 238 (527)
|.+++. ++..+.. .+|++|+|++|.++......+.. .+|++|+|++|++.. .+. ..|
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 999863 4444444 69999999999997544333322 589999999999983 232 356
Q ss_pred CCCCCCcEEEcccCCCCC-----CChhhccCCCCCCEEEccCCccc----ccCCcccCCCCCCcEEeccCCCCCCc----
Q 045837 239 GNMPNVNEIILSNNDLMG-----CLPSEIGWLKKLTVFDASSNSFY----GSVPQSFSSLESIHRLVLSYNQLTGY---- 305 (527)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~---- 305 (527)
..+.+|++|+|++|.++. ..+..+..+++|++|+|++|.++ +.++..+..+.+|++|+|++|.|++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 678899999999999973 23337888999999999999996 56777888999999999999999876
Q ss_pred chhhhhC--CCCCcEEEecCcccCC----CCCCCC-CCCCCCceecCCCCCCCCCC
Q 045837 306 VSEQICK--LPNINNFTFSYNYFQG----LGNECI-PGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 306 ~~~~l~~--l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~ 354 (527)
++..+.. +++|++|+|++|.+++ .++..+ .++++|+.|++++|.|++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 4556643 8999999999999988 344445 56799999999999998654
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=3.4e-24 Score=214.48 Aligned_cols=259 Identities=15% Similarity=0.165 Sum_probs=189.9
Q ss_pred ccccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCC--CCCCEEEccCCcccccccccccCCCCCcEEEeecCcC
Q 045837 83 CSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWL--SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRL 160 (527)
Q Consensus 83 c~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 160 (527)
.+|.++.|+. ..++.|+++++.+.. ..+..+ .+|++|++++|.+.+.... +.++.+|++|+|++|.+
T Consensus 37 ~~W~~~~~~~-------~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 37 KRWYRLASDE-------SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp HHHHHHHTCS-------TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE
T ss_pred HHHHHHhcCc-------hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc
Confidence 3488877642 236788888887763 455556 7888999999888876654 55788899999998888
Q ss_pred ccc-CCcccccCCcccEEecccCCCCCCcchhhhc-cccchhhcccc-ccccc-ccccc-CCCCcceEeccCC-cCCcc-
Q 045837 161 VGS-FPNVCLSWTSLRYLDLRYNNFEGEVPRELFK-MKLDAIFLNNN-RFSSW-IPETI-GESTVSVVTFAHN-NFSGC- 233 (527)
Q Consensus 161 ~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~-~~L~~L~L~~n-~l~~~-~~~~~-~~~~L~~L~L~~n-~l~~~- 233 (527)
++. ++..+..+.+|++|+|++|.+++.++..+.. .+|++|+|++| .+++. +...+ ...+|++|++++| .+++.
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 754 6667778888999999988887666555554 68888999888 56642 33323 3467999999999 88754
Q ss_pred CCCCCCCCC-CCcEEEcccC--CCC-CCChhhccCCCCCCEEEccCCc-ccccCCcccCCCCCCcEEeccCCC-CCCcch
Q 045837 234 VPRSIGNMP-NVNEIILSNN--DLM-GCLPSEIGWLKKLTVFDASSNS-FYGSVPQSFSSLESIHRLVLSYNQ-LTGYVS 307 (527)
Q Consensus 234 ~~~~l~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~ 307 (527)
+...+..++ +|++|+|++| .++ +.++..+..+++|++|+|++|. +++.....+..+.+|++|+|++|. +.....
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence 445577788 9999999999 454 3456677788999999999998 666666788888999999999994 443333
Q ss_pred hhhhCCCCCcEEEecCcccCCCCCCCCCCC-CCCceecCCCCCCCCCCCC
Q 045837 308 EQICKLPNINNFTFSYNYFQGLGNECIPGS-KEGGVFDDTSNCLAQRPSQ 356 (527)
Q Consensus 308 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~ 356 (527)
..+.++++|++|++++| ++. ..+..+ ..+..|++++|.+++....
T Consensus 266 ~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence 46788899999999988 433 233334 3477788899998865433
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=5.6e-22 Score=196.00 Aligned_cols=194 Identities=21% Similarity=0.336 Sum_probs=144.5
Q ss_pred CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837 98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL 177 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 177 (527)
.+.+|++|++++|.+... + .+..+++|++|+|++|++.+... +.++.+|++|+|++|++++. ..+..+.+|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 467788888888888763 2 57778888888888888876543 78888888888888888753 357778888888
Q ss_pred ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837 178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC 257 (527)
Q Consensus 178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 257 (527)
+|++|.+++ ++. + ....+|++|++++|.+.+... +..+.+|++|+|++|.+++
T Consensus 113 ~l~~n~l~~-~~~-l----------------------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~- 165 (308)
T 1h6u_A 113 DLTSTQITD-VTP-L----------------------AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD- 165 (308)
T ss_dssp ECTTSCCCC-CGG-G----------------------TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-
T ss_pred ECCCCCCCC-chh-h----------------------cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-
Confidence 888888763 322 1 122356667777776665432 7778888888888888874
Q ss_pred ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837 258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329 (527)
Q Consensus 258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 329 (527)
++. +..+.+|++|+|++|++++..+ +..+.+|++|+|++|++++.. .+..+++|++|++++|.+++.
T Consensus 166 ~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 166 LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 433 7888888888888888875432 777888888888888888765 378888888888888888764
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=5.7e-25 Score=229.84 Aligned_cols=255 Identities=15% Similarity=0.089 Sum_probs=130.2
Q ss_pred CcceEEEEEcCCCCcCCCCcccc-----CCCCCCCEEEccCCccccc----ccccccCCCCCcEEEeecCcCcccCCccc
Q 045837 98 NITVVAGIDLNGNDIAGYFPAEL-----GWLSDLALFHVNSNRFCGI----IPESLSNWKLIYEFDVSNNRLVGSFPNVC 168 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 168 (527)
.+++|++|+|++|.+.+.....+ ....+|++|+|++|++++. +...+..+.+|++|+|++|.+.+.....+
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 190 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence 34455555555555433211111 1233455555555555432 23334445555555555555543222222
Q ss_pred c-----cCCcccEEecccCCCCCC----cchhhhc-cccchhhcccccccccccc-----cc-CCCCcceEeccCCcCCc
Q 045837 169 L-----SWTSLRYLDLRYNNFEGE----VPRELFK-MKLDAIFLNNNRFSSWIPE-----TI-GESTVSVVTFAHNNFSG 232 (527)
Q Consensus 169 ~-----~l~~L~~L~Ls~n~i~~~----~p~~~~~-~~L~~L~L~~n~l~~~~~~-----~~-~~~~L~~L~L~~n~l~~ 232 (527)
. .+.+|++|+|++|.+++. +...+.. .+|++|++++|.+++.... .+ ...+|++|++++|.+++
T Consensus 191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 1 133555666666655532 1222222 4566666666655442111 11 12456666666666654
Q ss_pred c----CCCCCCCCCCCcEEEcccCCCCCCChhhcc-----CCCCCCEEEccCCccccc----CCcccCCCCCCcEEeccC
Q 045837 233 C----VPRSIGNMPNVNEIILSNNDLMGCLPSEIG-----WLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSY 299 (527)
Q Consensus 233 ~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~ 299 (527)
. +...+..+.+|++|+|++|.+++.....+. ...+|++|+|++|.+++. ++..+..+.+|++|+|++
T Consensus 271 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence 2 233344556666666666665432222221 124666666666666543 234445566777777777
Q ss_pred CCCCCcchhhhhC-----CCCCcEEEecCcccCC----CCCCCCCCCCCCceecCCCCCCCC
Q 045837 300 NQLTGYVSEQICK-----LPNINNFTFSYNYFQG----LGNECIPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 300 N~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~ 352 (527)
|.+++.....+.. ..+|++|++++|++++ .++..+..+++|++|++++|.|++
T Consensus 351 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 7776544333332 5577777777777764 344445566777777777777763
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.1e-21 Score=185.97 Aligned_cols=179 Identities=17% Similarity=0.159 Sum_probs=121.7
Q ss_pred CCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccC-CCCcceEeccC
Q 045837 149 LIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAH 227 (527)
Q Consensus 149 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~ 227 (527)
..++++++++.++ .++..+. .+|++|+|++|.+++. ....+. ..+|++|+|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-----------------------~~~~~~~l~~L~~L~L~~ 68 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATL-----------------------SDATFRGLTKLTWLNLDY 68 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCC-----------------------CTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCcc-----------------------CHhHhcCcccCCEEECCC
Confidence 3456666666666 3444333 4566666666666533 222222 24567777777
Q ss_pred CcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcch
Q 045837 228 NNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVS 307 (527)
Q Consensus 228 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 307 (527)
|.+.+..+..|..+.+|++|+|++|.+++..+..|..+.+|++|+|++|++++..+..|..+.+|++|+|++|+|+++..
T Consensus 69 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 77776666667777777777777777776656667777777777777777776555556777777777777777777666
Q ss_pred hhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837 308 EQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR 353 (527)
Q Consensus 308 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 353 (527)
..|.++++|++|+|++|+|++.....|..+.+|+.|++++|.++..
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6677777777777777777777666777777777777777777654
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2.8e-23 Score=210.28 Aligned_cols=231 Identities=14% Similarity=0.138 Sum_probs=180.6
Q ss_pred cceEEEEEcCCCCcCCCCc----cccCCCC-CCCEEEccCCcccccccccccCC-----CCCcEEEeecCcCcccCCcc-
Q 045837 99 ITVVAGIDLNGNDIAGYFP----AELGWLS-DLALFHVNSNRFCGIIPESLSNW-----KLIYEFDVSNNRLVGSFPNV- 167 (527)
Q Consensus 99 ~~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~- 167 (527)
..+|++|+|++|.+.+... ..|..++ +|++|+|++|+|.+.....|..+ .+|++|+|++|++++.....
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3559999999999988766 6778888 89999999999998766666664 89999999999998665554
Q ss_pred ---cccC-CcccEEecccCCCCCCcchhhhc------cccchhhcccccccccccccc----C-C-CCcceEeccCCcCC
Q 045837 168 ---CLSW-TSLRYLDLRYNNFEGEVPRELFK------MKLDAIFLNNNRFSSWIPETI----G-E-STVSVVTFAHNNFS 231 (527)
Q Consensus 168 ---~~~l-~~L~~L~Ls~n~i~~~~p~~~~~------~~L~~L~L~~n~l~~~~~~~~----~-~-~~L~~L~L~~n~l~ 231 (527)
+..+ .+|++|+|++|.+++.....+.. .+|++|+|++|.+++.....+ . . .+|++|+|++|++.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3344 89999999999998655444432 489999999999986444333 2 2 37999999999998
Q ss_pred ccCCCCC----CCC-CCCcEEEcccCCCCCC----ChhhccC-CCCCCEEEccCCcccccCC----cccCCCCCCcEEec
Q 045837 232 GCVPRSI----GNM-PNVNEIILSNNDLMGC----LPSEIGW-LKKLTVFDASSNSFYGSVP----QSFSSLESIHRLVL 297 (527)
Q Consensus 232 ~~~~~~l----~~l-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L 297 (527)
+.....+ ..+ .+|++|+|++|.+++. ++..+.. .++|++|||++|.+++... ..+..+.+|++|+|
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 7654333 344 5999999999999863 4445555 4699999999999986433 34577899999999
Q ss_pred cCCCCCCcch-------hhhhCCCCCcEEEecCcccCCC
Q 045837 298 SYNQLTGYVS-------EQICKLPNINNFTFSYNYFQGL 329 (527)
Q Consensus 298 s~N~l~~~~~-------~~l~~l~~L~~L~Ls~N~l~~~ 329 (527)
++|.+.++.. ..+.++.+|++||+++|++.+.
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 9999665433 3566788899999999998765
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=3.3e-24 Score=224.06 Aligned_cols=252 Identities=12% Similarity=0.087 Sum_probs=188.8
Q ss_pred eEEEEEcCCCCcCC----CCccccCCCCCCCEEEccCCcccccccccc-----cCCCCCcEEEeecCcCcccC----Ccc
Q 045837 101 VVAGIDLNGNDIAG----YFPAELGWLSDLALFHVNSNRFCGIIPESL-----SNWKLIYEFDVSNNRLVGSF----PNV 167 (527)
Q Consensus 101 ~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~----~~~ 167 (527)
+|++|+|++|.+.. .+...+..+++|++|+|++|.+.+.....+ ..+.+|++|+|++|++++.. ...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 68999999999874 456778889999999999999875433322 23567999999999988533 455
Q ss_pred cccCCcccEEecccCCCCCCcchhhhc------cccchhhcccccccccc----cccc-CCCCcceEeccCCcCCccC--
Q 045837 168 CLSWTSLRYLDLRYNNFEGEVPRELFK------MKLDAIFLNNNRFSSWI----PETI-GESTVSVVTFAHNNFSGCV-- 234 (527)
Q Consensus 168 ~~~l~~L~~L~Ls~n~i~~~~p~~~~~------~~L~~L~L~~n~l~~~~----~~~~-~~~~L~~L~L~~n~l~~~~-- 234 (527)
+..+.+|++|+|++|.+++.....+.. .+|++|++++|.+++.. ...+ ...+|++|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 667789999999999987443333322 48999999999988742 2222 3467999999999887642
Q ss_pred ---CCCCCCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCcccccCCcccC-----CCCCCcEEeccCCCC
Q 045837 235 ---PRSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGSVPQSFS-----SLESIHRLVLSYNQL 302 (527)
Q Consensus 235 ---~~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l 302 (527)
...+..+.+|++|+|++|.+++. ++..+..+++|++|+|++|.+++.....+. ...+|++|+|++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 12233578999999999999853 566777899999999999998754333332 236999999999999
Q ss_pred CCc----chhhhhCCCCCcEEEecCcccCCCCCCCCC-----CCCCCceecCCCCCCCC
Q 045837 303 TGY----VSEQICKLPNINNFTFSYNYFQGLGNECIP-----GSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 303 ~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~ 352 (527)
++. +...+..+++|++|++++|++++.....+. ...+|++|++++|.|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 876 456677889999999999998765333222 25799999999999983
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.9e-21 Score=182.73 Aligned_cols=183 Identities=12% Similarity=0.170 Sum_probs=154.1
Q ss_pred CCcEEEeecCcCcccCCcccccCCcccEEecccCC-CCCCcchhhhccccchhhccccccccccccccCCCCcceEeccC
Q 045837 149 LIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNN-FEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAH 227 (527)
Q Consensus 149 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~ 227 (527)
+|++|+|++|++++.....|.++.+|++|+|++|. ++ .++...+ .+..+|++|++++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f---------------------~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSF---------------------YNLSKVTHIEIRN 89 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTE---------------------ESCTTCCEEEEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHc---------------------CCCcCCcEEECCC
Confidence 79999999999997777789999999999999997 76 4432211 1234688888887
Q ss_pred -CcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCC---EEEccCC-cccccCCcccCCCCCCc-EEeccCCC
Q 045837 228 -NNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLT---VFDASSN-SFYGSVPQSFSSLESIH-RLVLSYNQ 301 (527)
Q Consensus 228 -n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~---~L~Ls~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~ 301 (527)
|++.+.....|.++.+|++|++++|.+++ ++. +..+.+|+ +|++++| ++++.....|.++.+|+ +|+|++|+
T Consensus 90 ~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 90 TRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp ETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred CCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 88887666788999999999999999995 665 88888888 9999999 99877777799999999 99999999
Q ss_pred CCCcchhhhhCCCCCcEEEecCcc-cCCCCCCCCCCC-CCCceecCCCCCCCCCCCC
Q 045837 302 LTGYVSEQICKLPNINNFTFSYNY-FQGLGNECIPGS-KEGGVFDDTSNCLAQRPSQ 356 (527)
Q Consensus 302 l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~ 356 (527)
++.+....+.. .+|++|++++|+ ++++....|.++ .+|+.|++++|.|++++..
T Consensus 168 l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 168 FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 99554444544 899999999995 998888889999 9999999999999988765
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3e-21 Score=190.79 Aligned_cols=173 Identities=14% Similarity=0.294 Sum_probs=128.9
Q ss_pred CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCccc
Q 045837 96 NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLR 175 (527)
Q Consensus 96 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 175 (527)
+..+++|+.|+|++|.+.+... +..+++|++|+|++|++.+. ..+.++.+|++|+|++|++++. + .+..+.+|+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~ 132 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQ 132 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCC
T ss_pred hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCC
Confidence 4567899999999999988644 99999999999999999865 3689999999999999999864 3 488999999
Q ss_pred EEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCC
Q 045837 176 YLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLM 255 (527)
Q Consensus 176 ~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 255 (527)
+|+|++|.+++ ++. +. ...+|++|++++|++.+... +..+.+|++|+|++|.++
T Consensus 133 ~L~l~~n~l~~-~~~-l~----------------------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 133 VLYLDLNQITN-ISP-LA----------------------GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EEECCSSCCCC-CGG-GG----------------------GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCccCc-Ccc-cc----------------------CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 99999999983 332 11 12345556666665554322 666777777777777776
Q ss_pred CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCC
Q 045837 256 GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTG 304 (527)
Q Consensus 256 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 304 (527)
+. +. +..+.+|++|+|++|++++.. .+..+.+|++|+|++|.+++
T Consensus 187 ~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 43 22 667777777777777776543 36677777777777777764
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3e-22 Score=200.28 Aligned_cols=233 Identities=13% Similarity=0.077 Sum_probs=184.3
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccc-ccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEe
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGI-IPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLD 178 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 178 (527)
.+++.|++++|.+.+.... +..+.+|++|+|++|.+.+. ++..+.++++|++|+|++|.+++..+..+..+.+|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6789999999999887654 56799999999999999865 777889999999999999999877777888899999999
Q ss_pred cccC-CCCCC-cchhhhc-cccchhhcccc-ccccc-ccccc-CCC-CcceEeccCC--cCC-ccCCCCCCCCCCCcEEE
Q 045837 179 LRYN-NFEGE-VPRELFK-MKLDAIFLNNN-RFSSW-IPETI-GES-TVSVVTFAHN--NFS-GCVPRSIGNMPNVNEII 248 (527)
Q Consensus 179 Ls~n-~i~~~-~p~~~~~-~~L~~L~L~~n-~l~~~-~~~~~-~~~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~ 248 (527)
|++| .+++. ++..+.. .+|++|++++| .+++. +...+ ... +|++|++++| .++ +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 67642 4433333 68999999999 88764 23333 345 8999999999 455 34445667889999999
Q ss_pred cccCC-CCCCChhhccCCCCCCEEEccCCc-ccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCccc
Q 045837 249 LSNND-LMGCLPSEIGWLKKLTVFDASSNS-FYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYF 326 (527)
Q Consensus 249 Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 326 (527)
|++|. +++.....+..+++|++|+|++|. +....-..+..+++|++|+|++| ++...-..+.. +|..|++++|++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~--~l~~L~l~~n~l 305 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--ALPHLQINCSHF 305 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH--HSTTSEESCCCS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh--hCcceEEecccC
Confidence 99999 776777789999999999999995 43332236788999999999999 66543334432 355667999999
Q ss_pred CCCCCCCCCC
Q 045837 327 QGLGNECIPG 336 (527)
Q Consensus 327 ~~~~~~~~~~ 336 (527)
++..+..+..
T Consensus 306 ~~~~~~~~~~ 315 (336)
T 2ast_B 306 TTIARPTIGN 315 (336)
T ss_dssp CCTTCSSCSS
T ss_pred ccccCCcccc
Confidence 9988765553
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=3.9e-21 Score=204.20 Aligned_cols=198 Identities=21% Similarity=0.378 Sum_probs=157.8
Q ss_pred cccce-eeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcc
Q 045837 84 SYYGV-FCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVG 162 (527)
Q Consensus 84 ~~~gv-~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 162 (527)
.|.++ .|. ..+|+.|+|++|++.+ ++..+ +++|++|+|++|+|+ .++ ..+.+|++|+|++|+|++
T Consensus 49 ~~~~l~~C~-------~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 49 AVSLLKECL-------INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST 114 (571)
T ss_dssp HHHHHHHHH-------HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC
T ss_pred hhhhccccc-------cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC
Confidence 58888 673 2479999999999988 66555 378999999999999 455 457899999999999996
Q ss_pred cCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCC
Q 045837 163 SFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMP 242 (527)
Q Consensus 163 ~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 242 (527)
++. +.+ +|++|+|++|.|++ ++. ...+|++|+|++|.+++ ++. ...+|++|+|++|.+++ ++. |. .
T Consensus 115 -ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~ 180 (571)
T 3cvr_A 115 -LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP--E 180 (571)
T ss_dssp -CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--T
T ss_pred -cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--C
Confidence 666 554 99999999999985 666 45789999999999987 333 44578999999999886 555 55 7
Q ss_pred CCcEEEcccCCCCCCChhhccCCCCC-------CEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCC
Q 045837 243 NVNEIILSNNDLMGCLPSEIGWLKKL-------TVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP 314 (527)
Q Consensus 243 ~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 314 (527)
+|++|+|++|.|+ .++. |.. +| ++|+|++|+|+ .++..+..+.+|+.|+|++|.|++.++..+..+.
T Consensus 181 ~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 181 SLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp TCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 8999999999988 6665 544 67 89999999988 5777777788999999999999888887776643
No 90
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=6.2e-20 Score=197.26 Aligned_cols=207 Identities=20% Similarity=0.261 Sum_probs=152.0
Q ss_pred CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837 98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL 177 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 177 (527)
.+++|++|+|++|.+++ ++. .+.+|++|+|++|+|+++ +. .+.+|++|+|++|++++ ++.. +.+|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L 146 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL 146 (622)
T ss_dssp CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence 56889999999999986 443 678999999999999864 32 56789999999999884 4433 4788888
Q ss_pred ecccCCCCCCcchhhhccccchhhcccccccccc-------------------ccccCCCCcceEeccCCcCCccCCCCC
Q 045837 178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWI-------------------PETIGESTVSVVTFAHNNFSGCVPRSI 238 (527)
Q Consensus 178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~-------------------~~~~~~~~L~~L~L~~n~l~~~~~~~l 238 (527)
+|++|.++ .++.. ..+|+.|++++|.+++.. +.. ..+|++|++++|.+.. ++.
T Consensus 147 ~Ls~N~l~-~l~~~--~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~-l~~-- 218 (622)
T 3g06_A 147 SVSDNQLA-SLPAL--PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS-LPA-- 218 (622)
T ss_dssp ECCSSCCS-CCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSS-CCC--
T ss_pred ECcCCcCC-CcCCc--cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccc-cCC--
Confidence 88888887 34332 134555555555554421 111 1345555555555542 221
Q ss_pred CCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcE
Q 045837 239 GNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINN 318 (527)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 318 (527)
.+.+|++|+|++|.|++ ++ ..+.+|++|+|++|+|+ .++. .+.+|++|+|++|+|+ .++..+.++++|++
T Consensus 219 -~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 219 -LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETT 288 (622)
T ss_dssp -CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCE
T ss_pred -CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCE
Confidence 23689999999999984 55 55789999999999998 4554 5689999999999999 56788999999999
Q ss_pred EEecCcccCCCCCCCC
Q 045837 319 FTFSYNYFQGLGNECI 334 (527)
Q Consensus 319 L~Ls~N~l~~~~~~~~ 334 (527)
|+|++|.|++..+..+
T Consensus 289 L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 289 VNLEGNPLSERTLQAL 304 (622)
T ss_dssp EECCSCCCCHHHHHHH
T ss_pred EEecCCCCCCcCHHHH
Confidence 9999999988665543
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.1e-20 Score=175.55 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=99.8
Q ss_pred CCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhc
Q 045837 123 LSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFL 202 (527)
Q Consensus 123 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L 202 (527)
..+|++|+|++|+|.+.....|.++.+|++|+|++|++++.....|..+.+|++|+|++|.++ .++.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~------------ 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPN------------ 93 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT------------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCH------------
Confidence 457888999988888777777888888999999999888666666778888888888888776 2211
Q ss_pred cccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccC
Q 045837 203 NNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSV 282 (527)
Q Consensus 203 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 282 (527)
..|.++.+|++|+|++|.+++..+..|..+.+|++|+|++|++++..
T Consensus 94 ---------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 94 ---------------------------------GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp ---------------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ---------------------------------hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 12334445555555555555333334455555555555555555444
Q ss_pred CcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCC
Q 045837 283 PQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGS 337 (527)
Q Consensus 283 p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (527)
...|..+.+|++|+|++|.+.+ .+++|++|+++.|+++|.++..+..+
T Consensus 141 ~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 141 DGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred HHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 3345555555555555554442 23345555555565555555544433
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=187.15 Aligned_cols=225 Identities=15% Similarity=0.160 Sum_probs=157.8
Q ss_pred CCCEEEccCCcccccccc---cccCCCCCcEEEeecCcCcccCCccc--ccCCcccEEecccCCCCCCcchhhhccccch
Q 045837 125 DLALFHVNSNRFCGIIPE---SLSNWKLIYEFDVSNNRLVGSFPNVC--LSWTSLRYLDLRYNNFEGEVPRELFKMKLDA 199 (527)
Q Consensus 125 ~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~ 199 (527)
.++.|.+.++.+....-. .+..+.+|++|+|++|.+.+..+..+ ..+.+|++|+|++|.+++..+.. ..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~------~~ 138 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL------AE 138 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH------HH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh------HH
Confidence 466777777666432110 11223557777777777776666666 66777777777777776422210 00
Q ss_pred hhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC--C--hhhccCCCCCCEEEccC
Q 045837 200 IFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC--L--PSEIGWLKKLTVFDASS 275 (527)
Q Consensus 200 L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~L~Ls~ 275 (527)
+ ......+|++|+|++|++.+..+..|+.+.+|++|+|++|++.+. + ...++.+.+|++|+|++
T Consensus 139 ~------------~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 139 L------------QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp H------------HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred H------------HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 0 011345799999999999888888999999999999999998642 2 22346889999999999
Q ss_pred CcccccCCc----ccCCCCCCcEEeccCCCCCCcchhhhhCC---CCCcEEEecCcccCCCCCCCCCCCCCCceecCCCC
Q 045837 276 NSFYGSVPQ----SFSSLESIHRLVLSYNQLTGYVSEQICKL---PNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSN 348 (527)
Q Consensus 276 n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 348 (527)
|+++. ++. .+..+.+|++|+|++|+|++..+..+..+ ++|++|+|++|+|+.+ +..+. .+|+.|++++|
T Consensus 207 N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 207 TGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp SCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSC
T ss_pred CCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCC
Confidence 99973 222 25678999999999999999877777766 6999999999999965 54443 79999999999
Q ss_pred CCCCCCCC--CCCCcccccccCCCC
Q 045837 349 CLAQRPSQ--KWATTCSPVVSNPVD 371 (527)
Q Consensus 349 ~l~~~~~~--~~~~~~~~~~~np~~ 371 (527)
.|++++.. ...-....+.+|++.
T Consensus 283 ~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 283 RLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred cCCCCchhhhCCCccEEECcCCCCC
Confidence 99986531 112223345566554
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=4.8e-20 Score=185.53 Aligned_cols=237 Identities=14% Similarity=0.117 Sum_probs=161.5
Q ss_pred ccccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccc-ccccCCCCCcE-EEee
Q 045837 83 CSYYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIP-ESLSNWKLIYE-FDVS 156 (527)
Q Consensus 83 c~~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~-L~Ls 156 (527)
|.+..|.|..... ..-..++++|+|++|+|+.+....|.++++|++|+|++|+|.+.++ .+|.++.+|++ ++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 6677778854221 0123578899999999987666678999999999999999866544 56788888765 5667
Q ss_pred cCcCcccCCcccccCCcccEEecccCCCCCCcchhhhc--cccchhhccc-cccccccccccCC--CCcceEeccCCcCC
Q 045837 157 NNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNN-NRFSSWIPETIGE--STVSVVTFAHNNFS 231 (527)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~-n~l~~~~~~~~~~--~~L~~L~L~~n~l~ 231 (527)
+|+++...++.|..+.+|++|++++|.++ .++...+. .++..|++.+ +++.......+.. ..+++|+|++|+|.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 78898777888889999999999999988 44433322 4666777754 4555544444433 24778888888887
Q ss_pred ccCCCCCCCCCCCcEEEccc-CCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhh
Q 045837 232 GCVPRSIGNMPNVNEIILSN-NDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQI 310 (527)
Q Consensus 232 ~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l 310 (527)
.. +..+....+|++|++++ |.++..-...|.++++|++|||++|+|+..-... +.+|++|.+.++.--..++ .+
T Consensus 168 ~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred CC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence 54 34444556788888875 5565333345788888888888888887433222 4456666655543333444 36
Q ss_pred hCCCCCcEEEecCcc
Q 045837 311 CKLPNINNFTFSYNY 325 (527)
Q Consensus 311 ~~l~~L~~L~Ls~N~ 325 (527)
.++.+|+++++.++.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 778888888887653
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=6.8e-20 Score=170.21 Aligned_cols=182 Identities=16% Similarity=0.154 Sum_probs=129.3
Q ss_pred CCccccceeeCCCCC----CCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEee
Q 045837 81 DVCSYYGVFCAPAPD----NSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVS 156 (527)
Q Consensus 81 ~~c~~~gv~c~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 156 (527)
..|.|.++.|..... .....+|++|+|++|++.+.....|.++++|++|+|++|+|++.....|.++.+|++|+|+
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 347788888864321 1234567888888888877666667788888888888888887666667778888888888
Q ss_pred cCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCC
Q 045837 157 NNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPR 236 (527)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 236 (527)
+|++++.....|..+.+|++|+|++|.+++ ....
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------------------------------~~~~ 118 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQS----------------------------------------------LPDG 118 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCC----------------------------------------------CCTT
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcc----------------------------------------------cCHh
Confidence 888876655566777777777777776651 1122
Q ss_pred CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837 237 SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN 315 (527)
Q Consensus 237 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 315 (527)
.|..+.+|++|+|++|.+++.....+..+.+|++|+|++|.+.+ .+.+|++|+++.|+++|.++.+++.+..
T Consensus 119 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 35566778888888888876555567778888888888886653 3457788888888888887777765543
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=7.6e-20 Score=184.07 Aligned_cols=237 Identities=11% Similarity=0.049 Sum_probs=177.9
Q ss_pred EEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCC-cccccCCcccE-Eecc
Q 045837 103 AGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP-NVCLSWTSLRY-LDLR 180 (527)
Q Consensus 103 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~Ls 180 (527)
++++.++++++. +|..+ .++|++|+|++|+|+.+..++|.++.+|++|+|++|++.+.++ ..|.++.+|++ ++++
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 467888988876 55555 3689999999999997777789999999999999999876554 46788888765 6677
Q ss_pred cCCCCCCcchh-hhc-cccchhhcccccccccccccc-CCCCcceEeccC-CcCCccCCCCCCCC-CCCcEEEcccCCCC
Q 045837 181 YNNFEGEVPRE-LFK-MKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAH-NNFSGCVPRSIGNM-PNVNEIILSNNDLM 255 (527)
Q Consensus 181 ~n~i~~~~p~~-~~~-~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~-n~l~~~~~~~l~~l-~~L~~L~Ls~N~l~ 255 (527)
+|+++ .++.. +.. .+|++|++++|++.......+ ...++..|++.+ +++.......|..+ ..+++|+|++|+|+
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 89998 55444 433 699999999999987655444 345678888865 56665555566666 46899999999998
Q ss_pred CCChhhccCCCCCCEEEccC-CcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCc-ccCCCCCCC
Q 045837 256 GCLPSEIGWLKKLTVFDASS-NSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYN-YFQGLGNEC 333 (527)
Q Consensus 256 ~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~ 333 (527)
.++.......+|++|++++ |.++..-...|.++.+|++|||++|+|+.+....+ .+|++|.+.++ .++.+ + .
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~l-P-~ 241 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKL-P-T 241 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCC-C-C
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcC-C-C
Confidence 4554555567899999986 55654434568999999999999999997655444 45666665554 34443 4 4
Q ss_pred CCCCCCCceecCCCCC
Q 045837 334 IPGSKEGGVFDDTSNC 349 (527)
Q Consensus 334 ~~~l~~L~~L~l~~N~ 349 (527)
+..+.+|+.++++++.
T Consensus 242 l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 242 LEKLVALMEASLTYPS 257 (350)
T ss_dssp TTTCCSCCEEECSCHH
T ss_pred chhCcChhhCcCCCCc
Confidence 7788999999997654
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.9e-20 Score=182.16 Aligned_cols=173 Identities=17% Similarity=0.286 Sum_probs=106.6
Q ss_pred CCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchh
Q 045837 121 GWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAI 200 (527)
Q Consensus 121 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L 200 (527)
..+.+|++|++++|.+... ..+..+.+|++|+|++|++++... +..+.+|++|+|++|.+++ ++. +
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l-------- 108 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-L-------- 108 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-G--------
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-h--------
Confidence 3455566666666665533 235556666666666666654322 5556666666666666552 211 1
Q ss_pred hccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccc
Q 045837 201 FLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYG 280 (527)
Q Consensus 201 ~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 280 (527)
....+|++|++++|++.+. ..+..+.+|++|++++|.+++. ..+..+++|++|+|++|++++
T Consensus 109 --------------~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 109 --------------KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp --------------TTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred --------------ccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 0112344555555544432 3456667777777777777743 467777777888888777775
Q ss_pred cCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837 281 SVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329 (527)
Q Consensus 281 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 329 (527)
..+ +..+.+|++|+|++|.|++. ..+..+++|++|++++|.++..
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECC
T ss_pred chh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCC
Confidence 433 77777788888888877764 2477777888888888877664
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.8e-19 Score=189.97 Aligned_cols=187 Identities=22% Similarity=0.315 Sum_probs=153.6
Q ss_pred CCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhcc
Q 045837 124 SDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLN 203 (527)
Q Consensus 124 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~ 203 (527)
.+|++|+|++|+|++ ++..+ +.+|++|+|++|+|+ .++ ..+.+|++|+|++|.|++ ++. +.. +|++|+|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECC
Confidence 389999999999987 55544 378999999999999 555 447899999999999995 777 444 99999999
Q ss_pred ccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCC
Q 045837 204 NNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVP 283 (527)
Q Consensus 204 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 283 (527)
+|++++ ++. ...+|++|+|++|.|++ ++. .+.+|++|+|++|.|++ ++. |. .+|++|+|++|+|+ .++
T Consensus 129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 999998 444 45679999999999996 444 57899999999999995 666 65 89999999999998 666
Q ss_pred cccCCCCCC-------cEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCC
Q 045837 284 QSFSSLESI-------HRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPG 336 (527)
Q Consensus 284 ~~~~~l~~L-------~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (527)
. |.. +| +.|+|++|+|+. ++..+..+++|++|+|++|.|++.++..+..
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 6 554 77 999999999995 6777778999999999999998876655443
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=6.6e-20 Score=196.76 Aligned_cols=192 Identities=16% Similarity=0.251 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecc
Q 045837 101 VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLR 180 (527)
Q Consensus 101 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 180 (527)
.+..+.|.++.+.+.. .+..+.+|++|++++|.|... + .|..+.+|++|+|++|++.+..+ +..+.+|++|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 3444455555554432 244566666777777666643 2 46666777777777776664432 6666677777777
Q ss_pred cCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChh
Q 045837 181 YNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS 260 (527)
Q Consensus 181 ~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 260 (527)
+|.+++ ++. +. ...+|++|+|++|.+.+. ..+..+.+|++|+|++|.+++. .
T Consensus 96 ~N~l~~-l~~-l~----------------------~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~ 147 (605)
T 1m9s_A 96 ENKIKD-LSS-LK----------------------DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T 147 (605)
T ss_dssp SSCCCC-CTT-ST----------------------TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G
T ss_pred CCCCCC-Chh-hc----------------------cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h
Confidence 776652 221 11 122345555555555432 2355666666666666666643 4
Q ss_pred hccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCC
Q 045837 261 EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLG 330 (527)
Q Consensus 261 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 330 (527)
.+..+.+|+.|+|++|.|++..+ +..+.+|+.|+|++|.|++. ..+..+.+|+.|+|++|.+.+..
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 56666667777777776665443 66666777777777766654 34666667777777777666543
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=8.3e-19 Score=165.46 Aligned_cols=164 Identities=21% Similarity=0.224 Sum_probs=119.9
Q ss_pred CCCCCCCCccccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEE
Q 045837 75 GNWVGTDVCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFD 154 (527)
Q Consensus 75 ~~w~~~~~c~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 154 (527)
..|.+...|.|.++.|.. +++.. ++..+ ..+|++|+|++|+|.++.+..|.++.+|++|+
T Consensus 11 ~~~~~~~~Cs~~~v~c~~-----------------~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 70 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS-----------------KRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELY 70 (229)
T ss_dssp CCCCTTCEEETTEEECTT-----------------SCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCCCCCEEeCCEeEccC-----------------CCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEE
Confidence 356788899999888842 23332 33333 27888999999998888788888888888888
Q ss_pred eecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccC
Q 045837 155 VSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCV 234 (527)
Q Consensus 155 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 234 (527)
|++|+|.......|..+.+|++|+|++|.|++ ..
T Consensus 71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~----------------------------------------------l~ 104 (229)
T 3e6j_A 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV----------------------------------------------LP 104 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----------------------------------------------CC
T ss_pred CCCCCCCCcChhhcccCCCcCEEECCCCcCCc----------------------------------------------cC
Confidence 88888875555666777778887777777651 22
Q ss_pred CCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc
Q 045837 235 PRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY 305 (527)
Q Consensus 235 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 305 (527)
...|..+.+|++|+|++|.|+ .++..+..+.+|++|+|++|+|++.....|..+.+|++|+|++|.+.+.
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred hhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 234556777888888888887 6677777788888888888888766556677778888888888877754
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=5.2e-19 Score=178.69 Aligned_cols=176 Identities=22% Similarity=0.240 Sum_probs=110.2
Q ss_pred EEEEcCCCCcCCCCccccCCCCCCCEEEccCCccccccccccc-CCCCCcEEEeecCcCcccCCcccccCCcccEEeccc
Q 045837 103 AGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLS-NWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRY 181 (527)
Q Consensus 103 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 181 (527)
+.++++++++.. +|..+. ..|++|+|++|+|++.....|. ++.+|++|+|++|+|++..+..|.++.+|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 367788888876 454443 4689999999999988777777 899999999999999877777888888999999988
Q ss_pred CCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhh
Q 045837 182 NNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSE 261 (527)
Q Consensus 182 n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 261 (527)
|+|+ .++...+ .+..+|++|+|++|+|.+..+..|.++.+|++|+|++|.|++.....
T Consensus 98 N~l~-~~~~~~~---------------------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 98 NHLH-TLDEFLF---------------------SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp SCCC-EECTTTT---------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred CcCC-cCCHHHh---------------------CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 8886 2221110 01134555555555555544555566666666666666665332222
Q ss_pred c---cCCCCCCEEEccCCcccccCCcccCCCCC--CcEEeccCCCCC
Q 045837 262 I---GWLKKLTVFDASSNSFYGSVPQSFSSLES--IHRLVLSYNQLT 303 (527)
Q Consensus 262 ~---~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~Ls~N~l~ 303 (527)
| ..+.+|++|||++|+|++.....+..+.. |+.|+|++|.+.
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 3 34555555555555555333333444443 245555555554
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=7.8e-19 Score=164.57 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=71.9
Q ss_pred cEEecccCCCCCCcchhhhccccchhhcccccccccccc-cc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837 175 RYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPE-TI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN 252 (527)
Q Consensus 175 ~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~-~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 252 (527)
+.+++++|.++ .++..+. ..+++|+|++|++++.... .+ ...+|++|+|++|++.+.....|.++.+|++|+|++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~-~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcc-cCccCCC-CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 46777777766 4554322 2344555555555544221 12 2233444444444444444444444444444444444
Q ss_pred CCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccC
Q 045837 253 DLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ 327 (527)
Q Consensus 253 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 327 (527)
.+++..+..|.++.+|++|+|++|+|++..+..|.++.+|++|+|++|+|++..+..|..+.+|++|+|++|.|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 444444444444444444444444444444444444444444444444444444444444444444444444444
No 102
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=9.2e-22 Score=209.89 Aligned_cols=204 Identities=18% Similarity=0.202 Sum_probs=146.0
Q ss_pred CCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCc-------------CcccCCcccccCCcccEEe-cccCCCCC
Q 045837 121 GWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR-------------LVGSFPNVCLSWTSLRYLD-LRYNNFEG 186 (527)
Q Consensus 121 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~i~~ 186 (527)
..+.+|+.|+|++|++. .++..++++.+|++|++++|. +.+..+..+..+.+|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 44566666666666665 456666666666666665543 2333334444455555555 4443321
Q ss_pred CcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCC
Q 045837 187 EVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLK 266 (527)
Q Consensus 187 ~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 266 (527)
.|+.+.+.+|.++... ...|++|+|++|++++ ++. |+.+.+|++|+|++|.|+ .+|..|+++.
T Consensus 424 ---------~L~~l~l~~n~i~~l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred ---------hhhhhhhhcccccccC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 3445555555554422 1358899999999986 454 889999999999999998 7888999999
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcc-hhhhhCCCCCcEEEecCcccCCCCCCC---CCCCCCCce
Q 045837 267 KLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYV-SEQICKLPNINNFTFSYNYFQGLGNEC---IPGSKEGGV 342 (527)
Q Consensus 267 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~ 342 (527)
+|++|+|++|+|++ ++ .+..+.+|+.|+|++|+|++.. +..+.++++|++|+|++|.|++..+.. +..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 99999999999986 56 7889999999999999999887 888999999999999999998875532 223677777
Q ss_pred ecC
Q 045837 343 FDD 345 (527)
Q Consensus 343 L~l 345 (527)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 754
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=9.1e-19 Score=164.13 Aligned_cols=134 Identities=18% Similarity=0.197 Sum_probs=94.3
Q ss_pred CcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837 219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS 298 (527)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 298 (527)
++++|+|++|+|.+.....|..+.+|++|+|++|.+++..+..|.++.+|++|+|++|+|++.....|.++.+|++|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 46666666666665555566777777777777777776666677777777777777777775544556667777777777
Q ss_pred CCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837 299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 352 (527)
+|+|++..+..|.++.+|++|+|++|+|+++....|..+.+|+.|++++|.+..
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 777777666677777777777777777777766667777777777777777653
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=3.1e-19 Score=180.33 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=91.6
Q ss_pred cEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhh-c-cccchhhccccccccccccccCC-CCcceEeccC
Q 045837 151 YEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELF-K-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAH 227 (527)
Q Consensus 151 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~ 227 (527)
+++++++++++ .++..+. ..|++|+|++|.|++.....+. . .+|++|+|++|+|++.....+.. .+|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888887 4555443 4578888888888733322221 1 45555555555555544433322 3455555555
Q ss_pred CcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCccc---CCCCCCcEEeccCCCCCC
Q 045837 228 NNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSF---SSLESIHRLVLSYNQLTG 304 (527)
Q Consensus 228 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~ 304 (527)
|+|.+.....|.++.+|++|+|++|.|++..+..|.++.+|++|+|++|+|++.....| ..+.+|++|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 55554444445555555555555555554444455555555555555555553222222 334555555555555554
Q ss_pred cchhhhhCCCC--CcEEEecCcccC
Q 045837 305 YVSEQICKLPN--INNFTFSYNYFQ 327 (527)
Q Consensus 305 ~~~~~l~~l~~--L~~L~Ls~N~l~ 327 (527)
+....+..+.. |+.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44444444444 244555555544
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=8.6e-19 Score=171.59 Aligned_cols=193 Identities=16% Similarity=0.194 Sum_probs=152.2
Q ss_pred CCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhcccc
Q 045837 126 LALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNN 205 (527)
Q Consensus 126 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n 205 (527)
+..+.+..+.+.+.. .+..+.+|++|++++|.+... ..+..+.+|++|+|++|.+++ +.. +
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~-l------------- 86 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP-L------------- 86 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG-G-------------
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc-c-------------
Confidence 334445555555432 345678899999999988744 347788899999999998873 222 1
Q ss_pred ccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcc
Q 045837 206 RFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQS 285 (527)
Q Consensus 206 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 285 (527)
....+|++|++++|.+.+. ..+..+.+|++|+|++|.+++ + ..+..+.+|++|+|++|++++. ..
T Consensus 87 ---------~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~ 151 (291)
T 1h6t_A 87 ---------ANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TV 151 (291)
T ss_dssp ---------TTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GG
T ss_pred ---------ccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hh
Confidence 1224577777777777653 348899999999999999985 4 4688999999999999999865 67
Q ss_pred cCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCCCC
Q 045837 286 FSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRPSQ 356 (527)
Q Consensus 286 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 356 (527)
+..+.+|++|+|++|+|++..+ +..+++|++|++++|+++++. .+..+.+|+.|++++|.++..+..
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCccc
Confidence 8899999999999999998755 899999999999999999863 488899999999999999876543
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=159.98 Aligned_cols=153 Identities=16% Similarity=0.258 Sum_probs=121.3
Q ss_pred CEEEccCCcccccccccccCCCCCcEEEeecCcCcccCC-cccccCCcccEEecccCCCCCCcchhhhccccchhhcccc
Q 045837 127 ALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFP-NVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNN 205 (527)
Q Consensus 127 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n 205 (527)
++|++++|+++. ++..+. ..+++|+|++|+|++..+ ..|..+.+|++|+|++|.|++ ++.
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~--------------- 74 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEE--------------- 74 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECT---------------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECH---------------
Confidence 578888888874 454442 356788888888886643 457778888888888888763 221
Q ss_pred cccccccccc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCc
Q 045837 206 RFSSWIPETI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQ 284 (527)
Q Consensus 206 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 284 (527)
..+ +..+|++|+|++|++.+..+..|.++.+|++|+|++|.|++..+..|.++.+|++|+|++|++++..+.
T Consensus 75 -------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 75 -------GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred -------HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 112 234688999999999887777789999999999999999988888899999999999999999988888
Q ss_pred ccCCCCCCcEEeccCCCCCCc
Q 045837 285 SFSSLESIHRLVLSYNQLTGY 305 (527)
Q Consensus 285 ~~~~l~~L~~L~Ls~N~l~~~ 305 (527)
.|..+.+|++|+|++|.+.+.
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECS
T ss_pred HhcCCCCCCEEEecCcCCcCC
Confidence 899999999999999998764
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3e-18 Score=160.57 Aligned_cols=152 Identities=17% Similarity=0.219 Sum_probs=118.2
Q ss_pred cEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccC-CCCcceEeccCCc
Q 045837 151 YEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIG-ESTVSVVTFAHNN 229 (527)
Q Consensus 151 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~L~~n~ 229 (527)
+.++++++.++ .++..+. .+|++|+|++|.|+ +.....+. ..+|++|+|++|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-----------------------~i~~~~~~~l~~L~~L~Ls~N~ 67 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-----------------------VIPPGAFSPYKKLRRIDLSNNQ 67 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-----------------------EECTTSSTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-----------------------CcCHhHhhCCCCCCEEECCCCc
Confidence 45666666665 3344332 45666666666665 32222332 3468888888888
Q ss_pred CCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhh
Q 045837 230 FSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQ 309 (527)
Q Consensus 230 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 309 (527)
+.+..+..|.++.+|++|+|++|.|++.....|.++.+|++|+|++|+|++..+..|..+.+|++|+|++|+|+++....
T Consensus 68 i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 68 ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence 88877888999999999999999998655566788999999999999999888888999999999999999999888888
Q ss_pred hhCCCCCcEEEecCcccCC
Q 045837 310 ICKLPNINNFTFSYNYFQG 328 (527)
Q Consensus 310 l~~l~~L~~L~Ls~N~l~~ 328 (527)
|..+.+|++|+|++|.|..
T Consensus 148 ~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTCTTCCEEECCSSCEEC
T ss_pred HhCCCCCCEEEeCCCCcCC
Confidence 8899999999999998865
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=6.5e-18 Score=159.34 Aligned_cols=135 Identities=17% Similarity=0.204 Sum_probs=110.2
Q ss_pred CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEec
Q 045837 218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL 297 (527)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 297 (527)
.+|++|+|++|++.+..+..|.++.+|++|+|++|.|++.....|..+.+|++|+|++|+|++..+..|..+.+|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45778888888888777777888888888888888887555566788888888888888888766666788888888888
Q ss_pred cCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837 298 SYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR 353 (527)
Q Consensus 298 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 353 (527)
++|+|+ .++..+..+.+|++|+|++|+|+++....|..+.+|+.|++++|.+...
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 888888 4567778888888888888888888777788888888888888888754
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.2e-18 Score=183.66 Aligned_cols=172 Identities=20% Similarity=0.341 Sum_probs=130.6
Q ss_pred CCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccE
Q 045837 97 SNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRY 176 (527)
Q Consensus 97 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 176 (527)
..+.+|+.|+|++|.+... ..|..+++|++|+|++|+|.+..+ |.++.+|++|+|++|++.+. ..+..+.+|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 3567789999999998775 368899999999999999997654 88999999999999999853 36888999999
Q ss_pred EecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCC
Q 045837 177 LDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMG 256 (527)
Q Consensus 177 L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 256 (527)
|+|++|.+. .++......+|+.|+|++|++++. .......+|++|+|++|.+.+..+ +..+.+|++|+|++|.|++
T Consensus 114 L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 114 LSLEHNGIS-DINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp EECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred EEecCCCCC-CCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 999999998 444333336788888888877765 222334567777777777776544 6777777777777777774
Q ss_pred CChhhccCCCCCCEEEccCCcccc
Q 045837 257 CLPSEIGWLKKLTVFDASSNSFYG 280 (527)
Q Consensus 257 ~~p~~~~~l~~L~~L~Ls~n~l~~ 280 (527)
+ ..+..+.+|+.|+|++|.+.+
T Consensus 190 -l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 -L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -C-GGGTTCTTCSEEECCSEEEEC
T ss_pred -C-hHHccCCCCCEEEccCCcCcC
Confidence 3 356777777777777777764
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=6.6e-19 Score=169.78 Aligned_cols=171 Identities=16% Similarity=0.249 Sum_probs=116.6
Q ss_pred CcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEE
Q 045837 98 NITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYL 177 (527)
Q Consensus 98 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 177 (527)
.+.+++.++++++.+++.. .+..+.+|++|++++|+|... + .+..+.+|++|+|++|++++..+ +.++.+|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3556777778888877643 567788888888888888754 3 57788888888888888875433 7778888888
Q ss_pred ecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837 178 DLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC 257 (527)
Q Consensus 178 ~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 257 (527)
+|++|.+++ ++... . .+|++|++++|++.+. ..+..+.+|++|+|++|++++.
T Consensus 91 ~L~~N~l~~-l~~~~-----------------------~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 91 SVNRNRLKN-LNGIP-----------------------S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp ECCSSCCSC-CTTCC-----------------------C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC
T ss_pred ECCCCccCC-cCccc-----------------------c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC
Confidence 888888762 22110 1 3466666666666643 2466677777777777777643
Q ss_pred ChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc
Q 045837 258 LPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY 305 (527)
Q Consensus 258 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 305 (527)
+ .+..+++|++|+|++|++++. ..+..+.+|+.|+|++|.+++.
T Consensus 144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 3 566677777777777777654 4566667777777777766644
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=3e-19 Score=196.23 Aligned_cols=188 Identities=17% Similarity=0.168 Sum_probs=74.8
Q ss_pred CccccceeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccc---------cccccccCCCCCcE
Q 045837 82 VCSYYGVFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCG---------IIPESLSNWKLIYE 152 (527)
Q Consensus 82 ~c~~~gv~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~---------~~~~~~~~l~~L~~ 152 (527)
.+.|.+..+. ..+++.|+|.+|.+... +.. .|+.++|+.|+|.+ ..++.|..+..|++
T Consensus 162 ~~~~~~~~~s-------~~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~ 228 (727)
T 4b8c_D 162 SGTATNSAVS-------TPLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHA 228 (727)
T ss_dssp -------------------------------------------------------------------------CCCCCCE
T ss_pred cccCCCceec-------CCccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcE
Confidence 4556666552 35688999998888663 222 23444444444432 33445566666666
Q ss_pred EEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCc
Q 045837 153 FDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSG 232 (527)
Q Consensus 153 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~ 232 (527)
|+|++|.+. .++..+.++.+|++|+|++|.|+ .++..+.. ..+|++|+|++|+|+
T Consensus 229 L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------------l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 229 LDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN----------------------LSNLRVLDLSHNRLT- 283 (727)
T ss_dssp EECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG----------------------GTTCCEEECTTSCCS-
T ss_pred EECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC----------------------CCCCCEEeCcCCcCC-
Confidence 666666665 44444556666666666666665 55544332 233555555555555
Q ss_pred cCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCC-CcEEeccCCCCCCcchh
Q 045837 233 CVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLES-IHRLVLSYNQLTGYVSE 308 (527)
Q Consensus 233 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~ 308 (527)
.++..|+++.+|++|+|++|.|+ .++..|+.+++|++|+|++|.|++.++..+..+.. +..|+|++|.+++.++.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 44555555566666666666555 45555555666666666666665555544433211 12245555555554443
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.3e-17 Score=153.36 Aligned_cols=105 Identities=13% Similarity=0.235 Sum_probs=69.4
Q ss_pred cceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCc-ccccCCcccCCCCCCcEEecc
Q 045837 220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNS-FYGSVPQSFSSLESIHRLVLS 298 (527)
Q Consensus 220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls 298 (527)
|++|++++|.+.+..+..|+.+.+|++|+|++|.+++..+..++.+++|++|+|++|. ++ .++ .+..+.+|++|+|+
T Consensus 90 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp CCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECT
T ss_pred CCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECC
Confidence 3444444444444444556677778888888888876667777778888888888887 54 443 56777778888888
Q ss_pred CCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837 299 YNQLTGYVSEQICKLPNINNFTFSYNYFQG 328 (527)
Q Consensus 299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 328 (527)
+|++++.. .+.++++|++|++++|++.+
T Consensus 168 ~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 168 FDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred CCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 88777643 56777777778877777653
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=4.6e-18 Score=163.82 Aligned_cols=171 Identities=14% Similarity=0.179 Sum_probs=118.6
Q ss_pred CCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEec
Q 045837 146 NWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTF 225 (527)
Q Consensus 146 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L 225 (527)
++.++..+++++|.+++.. .+..+.+|++|++++|.++ .++......+|++|+|++|++++... .....+|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 4556777788888887443 5677888999999999887 55532223678888888887777544 333456777777
Q ss_pred cCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCc
Q 045837 226 AHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGY 305 (527)
Q Consensus 226 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 305 (527)
++|++.+.. . +.. .+|++|+|++|.+++ ++ .+..+.+|++|+|++|++++. ..+..+.+|++|+|++|+|++.
T Consensus 93 ~~N~l~~l~-~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLN-G-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCT-T-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcC-c-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence 777777532 2 222 677777777777774 33 467777777777777777643 2566777777777777777765
Q ss_pred chhhhhCCCCCcEEEecCcccCCC
Q 045837 306 VSEQICKLPNINNFTFSYNYFQGL 329 (527)
Q Consensus 306 ~~~~l~~l~~L~~L~Ls~N~l~~~ 329 (527)
..+..+.+|++|++++|.+++.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 5667777777777777777665
No 114
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=6.7e-20 Score=197.55 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=89.3
Q ss_pred CCcceEeccCCcCCccCCCCCCC-CCCCcEEEcc----cCCCCCC-----ChhhccCCCCCCEEEccCCc--ccccCCcc
Q 045837 218 STVSVVTFAHNNFSGCVPRSIGN-MPNVNEIILS----NNDLMGC-----LPSEIGWLKKLTVFDASSNS--FYGSVPQS 285 (527)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L~~L~Ls~n~--l~~~~p~~ 285 (527)
.+|++|+++.|++++.....+.. +++|++|+++ .|.+++. +...+.++++|++|+|++|. +++.....
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 45666666656555443333333 6677777775 4556542 23335567778888876543 44333333
Q ss_pred c-CCCCCCcEEeccCCCCCCc-chhhhhCCCCCcEEEecCcccCCC-CCCCCCCCCCCceecCCCCCCCCCCCC
Q 045837 286 F-SSLESIHRLVLSYNQLTGY-VSEQICKLPNINNFTFSYNYFQGL-GNECIPGSKEGGVFDDTSNCLAQRPSQ 356 (527)
Q Consensus 286 ~-~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~ 356 (527)
+ ..+++|++|+|++|++++. +...+.++++|++|++++|.+++. ....+..+++|++|++++|.++....+
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~ 531 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD 531 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHH
Confidence 3 2367899999999988763 345567888999999999987643 222334678899999999998865433
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2e-17 Score=152.09 Aligned_cols=154 Identities=16% Similarity=0.246 Sum_probs=122.1
Q ss_pred ccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEE
Q 045837 169 LSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEII 248 (527)
Q Consensus 169 ~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 248 (527)
..+.+|++|++++|.++ .++. + ....+|++|++++|.+... ..+..+.+|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~~-l----------------------~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~ 94 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLTG-I----------------------EYAHNIKDLTINNIHATNY--NPISGLSNLERLR 94 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCTT-G----------------------GGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCcc-ChHH-H----------------------hcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEE
Confidence 34566777777777665 3331 1 1224577777777765533 3688899999999
Q ss_pred cccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCC-CCCcchhhhhCCCCCcEEEecCcccC
Q 045837 249 LSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQ-LTGYVSEQICKLPNINNFTFSYNYFQ 327 (527)
Q Consensus 249 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~Ls~N~l~ 327 (527)
+++|.+++..+..++.+.+|++|+|++|++++..+..+..+.+|++|+|++|. ++.. + .+.++++|++|++++|+++
T Consensus 95 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 95 IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCC
T ss_pred eECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCc
Confidence 99999997778889999999999999999998778889999999999999998 6654 4 6899999999999999999
Q ss_pred CCCCCCCCCCCCCceecCCCCCCCC
Q 045837 328 GLGNECIPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 328 ~~~~~~~~~l~~L~~L~l~~N~l~~ 352 (527)
+.. .+..+++|+.|++++|.|.+
T Consensus 173 ~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 173 DYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCT--TGGGCSSCCEEEECBC----
T ss_pred ChH--HhccCCCCCEEEeeCcccCC
Confidence 864 68889999999999999864
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.1e-19 Score=193.87 Aligned_cols=190 Identities=17% Similarity=0.151 Sum_probs=156.4
Q ss_pred cCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCC-------------CCCCcchhhhc-cccchhh-cccccccc
Q 045837 145 SNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNN-------------FEGEVPRELFK-MKLDAIF-LNNNRFSS 209 (527)
Q Consensus 145 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~~~p~~~~~-~~L~~L~-L~~n~l~~ 209 (527)
..+..|+.|+|++|++. .++..++.|.+|+.|++++|. +.+.++..+.. .+|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788999999999997 778888999999999987764 33344444433 4677777 6666543
Q ss_pred ccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCC
Q 045837 210 WIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSL 289 (527)
Q Consensus 210 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 289 (527)
.|..+.+.+|.+..... ..|++|+|++|.|++ ++. ++.+.+|++|+|++|+|+ .+|..|+.+
T Consensus 424 ---------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred ---------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 35666777777664322 258999999999995 675 999999999999999999 788999999
Q ss_pred CCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCC-CCCCCCCCCCceecCCCCCCCCCCCC
Q 045837 290 ESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLG-NECIPGSKEGGVFDDTSNCLAQRPSQ 356 (527)
Q Consensus 290 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~ 356 (527)
.+|+.|+|++|+|++ ++ .++++.+|++|+|++|+|++.. +..+..+.+|+.|++++|.|++.+..
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 999999999999998 45 8999999999999999999987 88899999999999999999987643
No 117
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=2.4e-19 Score=193.18 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=76.7
Q ss_pred CCCCCcEEEcccCCCCCCChhhccC-CCCCCEEEcc----CCccccc-----CCcccCCCCCCcEEeccCCC--CCCcch
Q 045837 240 NMPNVNEIILSNNDLMGCLPSEIGW-LKKLTVFDAS----SNSFYGS-----VPQSFSSLESIHRLVLSYNQ--LTGYVS 307 (527)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls----~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~--l~~~~~ 307 (527)
.+.+|++|+++.|.+++.....+.. +++|++|+|+ .|.+++. +...+.++++|++|+|++|. +++...
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 4667777777777776555445544 7778888885 5566542 22335567888888887543 665544
Q ss_pred hhhh-CCCCCcEEEecCcccCCC-CCCCCCCCCCCceecCCCCCCC
Q 045837 308 EQIC-KLPNINNFTFSYNYFQGL-GNECIPGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 308 ~~l~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~ 351 (527)
..+. .+++|++|++++|++++. ....+.++.+|++|++++|.|+
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 4444 478899999999988753 2334567889999999999876
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=4.7e-17 Score=149.00 Aligned_cols=111 Identities=16% Similarity=0.249 Sum_probs=73.6
Q ss_pred CcceEeccCCcCCccCCC-CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEec
Q 045837 219 TVSVVTFAHNNFSGCVPR-SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL 297 (527)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 297 (527)
++++|++++|++.+.... .|+.+.+|++|+|++|.|++..+..|.++.+|++|+|++|+|++..+..|.++.+|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455566666665544433 3666667777777777776666666667777777777777776666666666777777777
Q ss_pred cCCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837 298 SYNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329 (527)
Q Consensus 298 s~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 329 (527)
++|+|++..+..+..+++|++|+|++|.|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77777766666666677777777777766654
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.7e-16 Score=145.25 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=117.8
Q ss_pred cceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChh-hccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837 220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPS-EIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS 298 (527)
Q Consensus 220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 298 (527)
.++|++++|++. .++..+.. +|++|+|++|.+++..+. .|+.+++|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 467889999886 55655544 899999999999966554 48999999999999999998889999999999999999
Q ss_pred CCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837 299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR 353 (527)
Q Consensus 299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 353 (527)
+|+|++..+..|.++++|++|+|++|+|++..+..|..+.+|++|++++|.+++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999998888899999999999999999999999999999999999999999854
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=6.9e-17 Score=144.43 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=112.0
Q ss_pred CCcceEeccCCcCC-ccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEe
Q 045837 218 STVSVVTFAHNNFS-GCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLV 296 (527)
Q Consensus 218 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 296 (527)
.+|++|++++|.+. +.++..+..+.+|++|+|++|.+++. ..+..+.+|++|+|++|++++.++..+..+.+|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45888888888887 56677778888999999999998855 6788889999999999999876777777788999999
Q ss_pred ccCCCCCCcc-hhhhhCCCCCcEEEecCcccCCCCC---CCCCCCCCCceecCCCCCCCCCCC
Q 045837 297 LSYNQLTGYV-SEQICKLPNINNFTFSYNYFQGLGN---ECIPGSKEGGVFDDTSNCLAQRPS 355 (527)
Q Consensus 297 Ls~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~~ 355 (527)
|++|+|++.. ...+..+++|++|++++|.+++... ..+..+++|+.|++++|.+..++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 9999988753 2678888999999999999988765 467888899999999988876653
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=9.2e-16 Score=140.47 Aligned_cols=128 Identities=23% Similarity=0.303 Sum_probs=97.8
Q ss_pred ceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCC
Q 045837 221 SVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN 300 (527)
Q Consensus 221 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 300 (527)
+.+++++|++. .++..+. .+|++|+|++|.|+ .++..|.++.+|++|+|++|+|++..+..|.++.+|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45677777766 3444443 47888888888887 66677888888888888888888776677888888888888888
Q ss_pred CCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCC
Q 045837 301 QLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQ 352 (527)
Q Consensus 301 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 352 (527)
+|+++.+..|.++++|++|+|++|+|+++....|..+.+|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8887777778888888888888888887777777778888888888887764
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=5.7e-17 Score=161.52 Aligned_cols=102 Identities=16% Similarity=0.103 Sum_probs=82.2
Q ss_pred CCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCc-EEeccCCCCCCcchhhhhCCCCCcEE
Q 045837 241 MPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIH-RLVLSYNQLTGYVSEQICKLPNINNF 319 (527)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L 319 (527)
+.+|++|+|++|+++..-...|.++.+|++|+|.+| ++.+....|.++.+|+ .|+|.+ .++.+....|.++.+|++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678888888888888666667888888888888887 6656666788888888 888887 6776667788888888888
Q ss_pred EecCcccCCCCCCCCCCCCCCceec
Q 045837 320 TFSYNYFQGLGNECIPGSKEGGVFD 344 (527)
Q Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (527)
++++|+++.+...+|.++.+|+.|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 8888888888888888888888775
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=2.4e-17 Score=181.07 Aligned_cols=195 Identities=16% Similarity=0.137 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcCC---------CCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccC
Q 045837 101 VVAGIDLNGNDIAG---------YFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSW 171 (527)
Q Consensus 101 ~L~~L~L~~n~l~~---------~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 171 (527)
.++.++|+.+.|.+ ..++.+..+..|++|+|++|+|. .++..+.++.+|++|+|++|.|+ .++..|.+|
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 34555555555443 23567889999999999999998 56666779999999999999999 788889999
Q ss_pred CcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEccc
Q 045837 172 TSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSN 251 (527)
Q Consensus 172 ~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 251 (527)
.+|++|+|++|.|+ .++..+.. ..+|++|+|++|.|. .++..|+++.+|++|+|++
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~----------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGS----------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGG----------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCCCEEeCcCCcCC-ccChhhcC----------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 99999999999998 77765543 123555555555554 4455566666666777776
Q ss_pred CCCCCCChhhccCCCC-CCEEEccCCcccccCCcccCCCCCCcEEeccCC--------CCCCcchhhhhCCCCCcEEEec
Q 045837 252 NDLMGCLPSEIGWLKK-LTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN--------QLTGYVSEQICKLPNINNFTFS 322 (527)
Q Consensus 252 N~l~~~~p~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~~~~l~~l~~L~~L~Ls 322 (527)
|.|++.++..+..+.. +..|+|++|.+++.++. .|+.|++++| .|.+.....+.++..+....++
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls 399 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLS 399 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeee
Confidence 6666665555543321 12355666666655543 3344444444 2222233333444444555555
Q ss_pred CcccC
Q 045837 323 YNYFQ 327 (527)
Q Consensus 323 ~N~l~ 327 (527)
+|.+.
T Consensus 400 ~Nil~ 404 (727)
T 4b8c_D 400 YNTLC 404 (727)
T ss_dssp --CCC
T ss_pred ccccc
Confidence 55553
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=3.7e-15 Score=152.07 Aligned_cols=242 Identities=11% Similarity=0.082 Sum_probs=129.1
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEec
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDL 179 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 179 (527)
..++.+.|.+ .++.+-...|.++ +|+.++|.++ ++.+...+|.++ +|++++|.+ .+...-...|.+|.+|+.++|
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3444555543 2333333455553 5666666554 544444555553 466666654 444444455666666666666
Q ss_pred ccCCCCCCcchhhhc-cccchhhccccccccccccccCC-CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCC
Q 045837 180 RYNNFEGEVPRELFK-MKLDAIFLNNNRFSSWIPETIGE-STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGC 257 (527)
Q Consensus 180 s~n~i~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 257 (527)
.+|.++ .++...+. .+|+.+.|..+ +.......|.. .+|++|+|..+ +.......|.+ .+|+.++|. +.++..
T Consensus 188 ~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 666665 44443333 45666666533 44333333433 34666666543 33333344444 566666663 334434
Q ss_pred ChhhccCCCCCCEEEccCCccc-----ccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCC
Q 045837 258 LPSEIGWLKKLTVFDASSNSFY-----GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNE 332 (527)
Q Consensus 258 ~p~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 332 (527)
-...|.++.+|+.|++.+|.+. ......|.+|.+|+.|+|.+ .++.+....|.++.+|+.|+|.+| ++.+...
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 4455666666666666665543 23334566666666666663 355455556666666666666443 5555555
Q ss_pred CCCCCCCCceecCCCCCCCCCC
Q 045837 333 CIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 333 ~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
+|.++ +|+.|++.+|.+..+.
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCC
T ss_pred hCCCC-CCCEEEEcCCCCcccc
Confidence 66666 6666666666555443
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=2e-16 Score=138.48 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=103.4
Q ss_pred CCcceEeccCCcCC-ccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEe
Q 045837 218 STVSVVTFAHNNFS-GCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLV 296 (527)
Q Consensus 218 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 296 (527)
.++++|++++|.+. +.++..+..+.+|++|++++|.+++. ..+..+.+|++|+|++|.+++.++..+..+.+|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 35788888888887 56777778888899999999988855 6788888899999999988876777777788899999
Q ss_pred ccCCCCCCc-chhhhhCCCCCcEEEecCcccCCCCC---CCCCCCCCCceecCCC
Q 045837 297 LSYNQLTGY-VSEQICKLPNINNFTFSYNYFQGLGN---ECIPGSKEGGVFDDTS 347 (527)
Q Consensus 297 Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~l~~ 347 (527)
|++|++++. ....+.++++|++|++++|.+++... ..+..+++|+.||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999988874 34678888889999999998888765 4577788888888763
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=9.1e-16 Score=137.10 Aligned_cols=93 Identities=20% Similarity=0.212 Sum_probs=56.8
Q ss_pred CCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccC-CcccCCCCCCcEEeccCCCCCCcch---hhhhC
Q 045837 237 SIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSV-PQSFSSLESIHRLVLSYNQLTGYVS---EQICK 312 (527)
Q Consensus 237 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~ 312 (527)
.+..+.+|++|+|++|.+++.++..+..+.+|++|+|++|++++.. ...+..+.+|++|+|++|.+++... ..+..
T Consensus 66 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL 145 (168)
T ss_dssp SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT
T ss_pred hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh
Confidence 3445556666666666666545555555666666666666665421 1456666666777777776665544 45666
Q ss_pred CCCCcEEEecCcccCCC
Q 045837 313 LPNINNFTFSYNYFQGL 329 (527)
Q Consensus 313 l~~L~~L~Ls~N~l~~~ 329 (527)
+++|++|++++|.+...
T Consensus 146 l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 146 LPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CSSCCEETTEETTSCBC
T ss_pred CccCcEecCCCCChhhc
Confidence 77777777777766543
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=3.2e-15 Score=134.81 Aligned_cols=131 Identities=16% Similarity=0.145 Sum_probs=92.7
Q ss_pred cceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccC
Q 045837 220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSY 299 (527)
Q Consensus 220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 299 (527)
.+.++++++++.. ++..+ ..+|++|++++|.+++..+..|..+.+|++|+|++|++++..+..|..+.+|++|+|++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4566666666663 33322 25677777777777755555667777778888877777765555667777788888888
Q ss_pred CCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837 300 NQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR 353 (527)
Q Consensus 300 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 353 (527)
|+|++.....+..+.+|++|++++|+++++....+..+.+|++|++++|.+.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 877776666677777788888888877777666667777788888888877654
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=5.3e-15 Score=133.34 Aligned_cols=111 Identities=16% Similarity=0.212 Sum_probs=88.4
Q ss_pred CcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837 219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS 298 (527)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 298 (527)
+|++|++++|++.+.....|..+.+|++|+|++|.+++..+..|..+.+|++|+|++|++++..+..|..+.+|++|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 57777777777776666667788888888888888886666667888888888888888887666667888888888888
Q ss_pred CCCCCCcchhhhhCCCCCcEEEecCcccCCC
Q 045837 299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGL 329 (527)
Q Consensus 299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 329 (527)
+|+|+++....+..+++|++|+|++|.+.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 8888877666677888888888888888764
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=2.8e-14 Score=145.63 Aligned_cols=245 Identities=13% Similarity=0.089 Sum_probs=194.4
Q ss_pred CCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcc
Q 045837 95 DNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSL 174 (527)
Q Consensus 95 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 174 (527)
.|.++ +|+.++|.++ +..+-...|.++ +|+.++|.+ ++..+...+|.++.+|+.++|.+|+++..-...|. +.+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence 35554 6999999876 666555677774 799999986 67777778899999999999999999855555565 6899
Q ss_pred cEEecccCCCCCCcchhhhc--cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccC
Q 045837 175 RYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNN 252 (527)
Q Consensus 175 ~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 252 (527)
+.+.|.++ ++ .+....+. .+|+.|+|..+ ++......|...+|+++.| .+.+.......|.++.+|+++++.+|
T Consensus 206 ~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 206 EEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp SEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred CEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence 99999855 65 56555554 58999999875 5555556666678999999 45666666778999999999999998
Q ss_pred CCC-----CCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccC
Q 045837 253 DLM-----GCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQ 327 (527)
Q Consensus 253 ~l~-----~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 327 (527)
.+. ......|.++.+|+.++|.+ +++......|.+|.+|+.|+|.+| ++.+...+|.++ +|+.|++++|.+.
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 765 34566899999999999994 577666678999999999999665 776667889999 9999999999998
Q ss_pred CCCCCCCCCCC-CCceecCCCCCCC
Q 045837 328 GLGNECIPGSK-EGGVFDDTSNCLA 351 (527)
Q Consensus 328 ~~~~~~~~~l~-~L~~L~l~~N~l~ 351 (527)
.+....|.++. +++.|.+..+.+.
T Consensus 359 ~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 359 QVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp BCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ccccccccCCCCCccEEEeCHHHHH
Confidence 88778888884 7788888777654
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=4.8e-15 Score=135.69 Aligned_cols=109 Identities=21% Similarity=0.268 Sum_probs=88.5
Q ss_pred CcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837 219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS 298 (527)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 298 (527)
++++|+|++|++. .++..|.++.+|++|+|++|.|++..+..|.++.+|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5677777777776 455678888888888888888887777778888888888888888887777778888888888888
Q ss_pred CCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837 299 YNQLTGYVSEQICKLPNINNFTFSYNYFQG 328 (527)
Q Consensus 299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 328 (527)
+|+|+++....|..+.+|++|+|++|.+.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 888887776778888888888888888765
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=3.1e-17 Score=176.68 Aligned_cols=89 Identities=8% Similarity=0.013 Sum_probs=53.9
Q ss_pred ccCCCCCCEEEccCCcccccCCcccCC-CCCCcEEeccCCCCCCcchhhh-hCCCCCcEEEecCcccCCCCCC-CCCCCC
Q 045837 262 IGWLKKLTVFDASSNSFYGSVPQSFSS-LESIHRLVLSYNQLTGYVSEQI-CKLPNINNFTFSYNYFQGLGNE-CIPGSK 338 (527)
Q Consensus 262 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~ 338 (527)
+..+++|++|+|++ .+++.....+.. +++|++|+|++|.+++.....+ .++++|++|+|++|.+++.... .+..++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34455566666654 343322223332 5677888888887765544444 5677888888888877543222 234467
Q ss_pred CCceecCCCCCCC
Q 045837 339 EGGVFDDTSNCLA 351 (527)
Q Consensus 339 ~L~~L~l~~N~l~ 351 (527)
+|+.|++++|.++
T Consensus 507 ~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 507 TMRSLWMSSCSVS 519 (594)
T ss_dssp GSSEEEEESSCCB
T ss_pred CCCEEeeeCCCCC
Confidence 8888888888774
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=1.5e-17 Score=179.24 Aligned_cols=252 Identities=13% Similarity=0.094 Sum_probs=148.5
Q ss_pred CcceEEEEEcCCCC--cCCC-CccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCc---------------
Q 045837 98 NITVVAGIDLNGND--IAGY-FPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR--------------- 159 (527)
Q Consensus 98 ~~~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--------------- 159 (527)
.+++|+.|+|+++. +... +...+.++++|++|+|++|...+.++..+.++.+|++|++.++.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 56788888998886 2111 11122456888888888873222255556666677777654431
Q ss_pred -----------Cc----ccCCcccccCCcccEEecccCCCCCCcchhhhc--cccchhhcccccccccccccc--CCCCc
Q 045837 160 -----------LV----GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETI--GESTV 220 (527)
Q Consensus 160 -----------l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~--~~~~L 220 (527)
+. ..++..+..+.+|++|+|++|.+++.....+.. .+|++|++.+| +.......+ ...+|
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 11 112222235678888888888866433222222 57888888877 332211111 23568
Q ss_pred ceEeccC---------CcCCccCCCCC-CCCCCCcEEEcccCCCCCCChhhcc-CCCCCCEEEcc--C----Cccccc--
Q 045837 221 SVVTFAH---------NNFSGCVPRSI-GNMPNVNEIILSNNDLMGCLPSEIG-WLKKLTVFDAS--S----NSFYGS-- 281 (527)
Q Consensus 221 ~~L~L~~---------n~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls--~----n~l~~~-- 281 (527)
++|++.+ +.+++.....+ .++.+|++|+++.|.+++.....+. .+++|++|+|+ + |++++.
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 8887743 33332211112 2367788888887877754444443 47788888888 3 444411
Q ss_pred ---CCcccCCCCCCcEEeccCCCCCCcchhhhhC-CCCCcEEEecCcccCCCCCCCC-CCCCCCceecCCCCCCC
Q 045837 282 ---VPQSFSSLESIHRLVLSYNQLTGYVSEQICK-LPNINNFTFSYNYFQGLGNECI-PGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 282 ---~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~ 351 (527)
+...+..+.+|++|+|++ .+++.....+.. +++|++|+|++|.+++.....+ .++++|+.|++++|.++
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 112245667888888876 666554555554 7788888888888765433223 45678888888888875
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.5e-15 Score=130.45 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=90.4
Q ss_pred CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCccccc-CCcccCCCCCCcEEe
Q 045837 218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGS-VPQSFSSLESIHRLV 296 (527)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~ 296 (527)
.+|++|++++|.+.+. ..++.+.+|++|+|++|.+++.++..+..+.+|++|++++|.+++. .+..+..+++|++|+
T Consensus 42 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 42 EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 4688888888888866 6788999999999999999977888888899999999999999863 336788999999999
Q ss_pred ccCCCCCCcch---hhhhCCCCCcEEEecC
Q 045837 297 LSYNQLTGYVS---EQICKLPNINNFTFSY 323 (527)
Q Consensus 297 Ls~N~l~~~~~---~~l~~l~~L~~L~Ls~ 323 (527)
|++|.+++... ..+..+++|++|++++
T Consensus 120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999998765 5789999999999864
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=2.1e-14 Score=142.97 Aligned_cols=196 Identities=9% Similarity=0.049 Sum_probs=131.5
Q ss_pred CCCCCEEEccCCcccccccccccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCC----C-------------
Q 045837 123 LSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNF----E------------- 185 (527)
Q Consensus 123 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i----~------------- 185 (527)
+.+|++|+|.+ +++.+...+|.++.+|++|+|++|.+.......|.++.++.+|.+..+.. .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 56666666665 55555555566666666666666665544445555555555554443211 0
Q ss_pred ---------CCcchhhhc-----cccchhhcccccccccccccc-CCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcc
Q 045837 186 ---------GEVPRELFK-----MKLDAIFLNNNRFSSWIPETI-GESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILS 250 (527)
Q Consensus 186 ---------~~~p~~~~~-----~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 250 (527)
+.+...++. .+++.+.+.++-......... ...+|++|+|.+|++.......|.++.+|++|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 011111111 123333333321110000000 13579999999999997777889999999999999
Q ss_pred cCCCCCCChhhccCCCCCC-EEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEe
Q 045837 251 NNDLMGCLPSEIGWLKKLT-VFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTF 321 (527)
Q Consensus 251 ~N~l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 321 (527)
+| ++..-...|.++.+|+ .|+|.+ +++.+....|.+|.+|+.|+|++|.++.+....|.++.+|+.|+.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 98 7766677899999999 999999 777666788999999999999999999888889999999999874
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=9.2e-15 Score=131.66 Aligned_cols=130 Identities=14% Similarity=0.120 Sum_probs=87.4
Q ss_pred CCcceEeccCCcCCccCCCCCCCCC-CCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEe
Q 045837 218 STVSVVTFAHNNFSGCVPRSIGNMP-NVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLV 296 (527)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 296 (527)
.+|++|++++|++... + .+..+. +|++|+|++|.+++. ..+..+.+|++|+|++|++++..+..|..+.+|++|+
T Consensus 19 ~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 4577777777777643 2 344444 777777777777743 4677777777888877777754444456777778888
Q ss_pred ccCCCCCCcch-hhhhCCCCCcEEEecCcccCCCCCC---CCCCCCCCceecCCCCCCC
Q 045837 297 LSYNQLTGYVS-EQICKLPNINNFTFSYNYFQGLGNE---CIPGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 297 Ls~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~ 351 (527)
|++|+|+.... ..+..+++|++|++++|.++..... .+..+++|+.||+++|.+.
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88877764322 2667777788888888877654322 3666777778877777665
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.1e-13 Score=123.91 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=62.4
Q ss_pred cceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccC
Q 045837 220 VSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSY 299 (527)
Q Consensus 220 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 299 (527)
.++|++++|++.. ++..+. .+|++|+|++|.|++..+..|.++.+|++|+|++|+|++..+..|.++.+|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4556666666653 333332 4566666666666655555566666666666666666655444555666666666666
Q ss_pred CCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837 300 NQLTGYVSEQICKLPNINNFTFSYNYFQG 328 (527)
Q Consensus 300 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 328 (527)
|+|+++....|.++.+|++|+|++|.|++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 66665555555666666666666665554
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=2.6e-14 Score=128.64 Aligned_cols=136 Identities=18% Similarity=0.180 Sum_probs=97.0
Q ss_pred ccccCCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcE
Q 045837 167 VCLSWTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNE 246 (527)
Q Consensus 167 ~~~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 246 (527)
.+..+.+|++|+|++|.++ .++...... .+|++|++++|.+.+. ..|..+.+|++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~----------------------~~L~~L~Ls~N~l~~~--~~l~~l~~L~~ 68 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATL----------------------DQFDAIDFSDNEIRKL--DGFPLLRRLKT 68 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGT----------------------TCCSEEECCSSCCCEE--CCCCCCSSCCE
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcC----------------------CCCCEEECCCCCCCcc--cccccCCCCCE
Confidence 3456778888888888887 332211111 1566777777777654 56778888888
Q ss_pred EEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCc--ccCCCCCCcEEeccCCCCCCcchh---hhhCCCCCcEEEe
Q 045837 247 IILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQ--SFSSLESIHRLVLSYNQLTGYVSE---QICKLPNINNFTF 321 (527)
Q Consensus 247 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L~~L~L 321 (527)
|+|++|.+++..+..+..+.+|++|+|++|+++ .++. .+..+.+|++|+|++|.++..... .+..+++|++||+
T Consensus 69 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp EECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred EECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 888888888554444578888888888888886 4554 677888888888888888754322 4788888999998
Q ss_pred cCcccCC
Q 045837 322 SYNYFQG 328 (527)
Q Consensus 322 s~N~l~~ 328 (527)
++|.+..
T Consensus 148 ~~n~~~~ 154 (176)
T 1a9n_A 148 QKVKLKE 154 (176)
T ss_dssp EECCHHH
T ss_pred CcCCHHH
Confidence 8887653
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.5e-16 Score=146.46 Aligned_cols=61 Identities=21% Similarity=0.264 Sum_probs=33.6
Q ss_pred CCCCCEEEccCCcccccccc------cccCCCCCcEEEeecCcCcccCCcccccCCcccEEecccCCCC
Q 045837 123 LSDLALFHVNSNRFCGIIPE------SLSNWKLIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFE 185 (527)
Q Consensus 123 l~~L~~L~Ls~n~i~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 185 (527)
...++.++++++++.+.++. .|.++.+|++|+|++|++++ ++ .+..+.+|++|+|++|.++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence 33444444444444444333 55566666666666666654 33 5555666666666666554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1.9e-13 Score=122.26 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=82.4
Q ss_pred CcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecC
Q 045837 244 VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY 323 (527)
Q Consensus 244 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 323 (527)
.++|++++|.++ .+|..+ ..+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 567888888877 566544 37788888888888877677777888888888888888877666777788888888888
Q ss_pred cccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837 324 NYFQGLGNECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 324 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
|+|+++.+..|..+.+|+.|+|++|.++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8888777777777888888888888776543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1.8e-13 Score=122.87 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=60.5
Q ss_pred ceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCC
Q 045837 221 SVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYN 300 (527)
Q Consensus 221 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 300 (527)
+.+++++|++. .++..+. .+|++|+|++|.|++..+..|.++++|++|+|++|+|++.....|..+.+|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666654 3343332 45666666666666555555666666666666666666444444555666666666666
Q ss_pred CCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837 301 QLTGYVSEQICKLPNINNFTFSYNYFQG 328 (527)
Q Consensus 301 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 328 (527)
+|+++....|.++.+|++|+|++|.|..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 6665544445556666666666665554
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=4e-13 Score=120.63 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=79.6
Q ss_pred CcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecC
Q 045837 244 VNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSY 323 (527)
Q Consensus 244 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 323 (527)
-+++++++|.++ .+|..+. .+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++....|.++.+|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367777777776 5665543 6777888888887776677777777788888888877776666667777788888888
Q ss_pred cccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837 324 NYFQGLGNECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 324 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
|+|+++....|..+.+|+.|++++|.|...+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 8777776666777777888888887776544
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.9e-15 Score=138.96 Aligned_cols=127 Identities=15% Similarity=0.167 Sum_probs=90.5
Q ss_pred CCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEec
Q 045837 218 STVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVL 297 (527)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 297 (527)
.+|++|++++|++.+ ++ .+..+.+|++|++++|.++ .++..+..+.+|++|+|++|++++ ++ .+..+.+|++|+|
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 457777777777775 44 6777788888888888877 566666667788888888888875 33 5667778888888
Q ss_pred cCCCCCCcch-hhhhCCCCCcEEEecCcccCCCCCCC----------CCCCCCCceecCCCCCCC
Q 045837 298 SYNQLTGYVS-EQICKLPNINNFTFSYNYFQGLGNEC----------IPGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 298 s~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~----------~~~l~~L~~L~l~~N~l~ 351 (527)
++|+|++... ..+..+++|++|++++|.+++..+.. +..+++|+.|| +|.++
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888876433 46777888888888888876654432 56677777776 55554
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=2.3e-14 Score=144.76 Aligned_cols=168 Identities=14% Similarity=0.195 Sum_probs=78.3
Q ss_pred CCCCEEEccCCcccccccccccC-----CCCCcEEEeecCcCcccCCccc-ccCCcccEEecccCCCCCCcchhhhcccc
Q 045837 124 SDLALFHVNSNRFCGIIPESLSN-----WKLIYEFDVSNNRLVGSFPNVC-LSWTSLRYLDLRYNNFEGEVPRELFKMKL 197 (527)
Q Consensus 124 ~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~p~~~~~~~L 197 (527)
.+|++|+|++|+|+......|.. ..+|++|+|++|.++......+ ..+.+|++|+|++|.|+......+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~--- 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD--- 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH---
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH---
Confidence 46777777777766433222221 2466666666666643211111 22345666666666554211111110
Q ss_pred chhhcccccccccccccc--CCCCcceEeccCCcCCcc----CCCCCCCCCCCcEEEcccCCCCCC----ChhhccCCCC
Q 045837 198 DAIFLNNNRFSSWIPETI--GESTVSVVTFAHNNFSGC----VPRSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKK 267 (527)
Q Consensus 198 ~~L~L~~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~ 267 (527)
.+ ...+|++|+|++|.|++. +...+..+.+|++|+|++|.|++. +...+..+.+
T Consensus 149 ----------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 149 ----------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp ----------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred ----------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 00 112355555555554431 112234445566666666665422 1333444555
Q ss_pred CCEEEccCCccccc----CCcccCCCCCCcEEeccCCCCCCcchhhh
Q 045837 268 LTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGYVSEQI 310 (527)
Q Consensus 268 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l 310 (527)
|++|+|++|.|+.. +...+..+.+|++|+|++|.|++.....+
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 66666666655432 11223334556666666665554433333
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=7.4e-12 Score=125.26 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=70.9
Q ss_pred ceEeccCC-cCCccCCCCCCCCCCCcEEEccc-CCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837 221 SVVTFAHN-NFSGCVPRSIGNMPNVNEIILSN-NDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS 298 (527)
Q Consensus 221 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 298 (527)
..++++++ ++.+ ++. |..+.+|++|+|++ |.|++..+..|.++.+|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34566666 5653 555 77777777777775 77776666667777777777777777776666667777777777777
Q ss_pred CCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837 299 YNQLTGYVSEQICKLPNINNFTFSYNYFQG 328 (527)
Q Consensus 299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 328 (527)
+|+|+++.+..+..+. |++|+|++|.|..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 7777765555555544 7777777776654
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=2.4e-13 Score=137.27 Aligned_cols=183 Identities=11% Similarity=0.143 Sum_probs=116.3
Q ss_pred CCCcEEEeecCcCcccCCccccc-----CCcccEEecccCCCCCCcchhhhccccchhhccccccccccccccCCCCcce
Q 045837 148 KLIYEFDVSNNRLVGSFPNVCLS-----WTSLRYLDLRYNNFEGEVPRELFKMKLDAIFLNNNRFSSWIPETIGESTVSV 222 (527)
Q Consensus 148 ~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~i~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~ 222 (527)
..|++|+|++|.++......+.. ..+|++|+|++|.++......+.. ...+|++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~---------------------~L~~L~~ 130 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP---------------------VFLRARK 130 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH---------------------HHHTEEE
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH---------------------HHHhccH
Confidence 56888888888876432222222 257888888888776322222111 0113566
Q ss_pred EeccCCcCCccCCCCC-----CCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCccccc----CCcccCCC
Q 045837 223 VTFAHNNFSGCVPRSI-----GNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQSFSSL 289 (527)
Q Consensus 223 L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l 289 (527)
|+|++|.+.+.....+ ....+|++|+|++|.|++. +...+..+.+|++|||++|.|+.. +...+..+
T Consensus 131 L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 6666666654322222 2457899999999998742 344557789999999999998743 24456677
Q ss_pred CCCcEEeccCCCCCCc----chhhhhCCCCCcEEEecCcccCCCCCCCCCCC---C--CCceec--CCCCCCC
Q 045837 290 ESIHRLVLSYNQLTGY----VSEQICKLPNINNFTFSYNYFQGLGNECIPGS---K--EGGVFD--DTSNCLA 351 (527)
Q Consensus 290 ~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~--~L~~L~--l~~N~l~ 351 (527)
.+|++|+|++|.|++. +...+..+++|++|+|++|.|++.....+..+ . .|+.+. +.+|.++
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 8999999999999864 34456677899999999999875433222211 1 166665 5555554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.3e-11 Score=123.55 Aligned_cols=101 Identities=14% Similarity=0.222 Sum_probs=52.8
Q ss_pred hhcccc-ccccccccccCC-CCcceEeccC-CcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCC
Q 045837 200 IFLNNN-RFSSWIPETIGE-STVSVVTFAH-NNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSN 276 (527)
Q Consensus 200 L~L~~n-~l~~~~~~~~~~-~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 276 (527)
++++++ +++. ++. +.. .+|++|+|++ |.|.+..+..|.++.+|++|+|++|+|++..+..|.++.+|++|||++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 4444 233 322 3455556653 5555544455555555666666666555555555555555666666666
Q ss_pred cccccCCcccCCCCCCcEEeccCCCCC
Q 045837 277 SFYGSVPQSFSSLESIHRLVLSYNQLT 303 (527)
Q Consensus 277 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 303 (527)
+|++..+..|..+. |+.|+|.+|.|.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55544333343333 555566555555
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.22 E-value=2.5e-10 Score=116.26 Aligned_cols=111 Identities=5% Similarity=0.045 Sum_probs=80.4
Q ss_pred CCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837 236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN 315 (527)
Q Consensus 236 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 315 (527)
..|.++.+|+.+.+.++... .....|.++.+|+.+++. +.++......|.++.+|+.++|.++ ++.+...+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 45667778888888765443 445567788888888886 3454455567888888888888754 55555677888888
Q ss_pred CcEEEecCcccCCCCCCCCCCCCCCceecCCCCCC
Q 045837 316 INNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCL 350 (527)
Q Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 350 (527)
|+.+.|..+ ++.+...+|.++.+|+.+++.+|..
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 888888654 6666677888888888888877654
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.21 E-value=5e-10 Score=114.04 Aligned_cols=249 Identities=14% Similarity=0.083 Sum_probs=122.1
Q ss_pred eeeCCCCCCCCcceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecCc--------
Q 045837 88 VFCAPAPDNSNITVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNNR-------- 159 (527)
Q Consensus 88 v~c~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------- 159 (527)
|+-.....|.++.+|+.++|.++ ++.+-..+|.++.+|+.++|.++ ++.+-..+|.++.+|+.+.+..+-
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 33344445778888888888643 55555567888888888888654 444444566666666655543321
Q ss_pred -------------CcccCCcccccCCcccEEecccCCCCCCcchhhhc--cccchhhccccccccccccc----------
Q 045837 160 -------------LVGSFPNVCLSWTSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPET---------- 214 (527)
Q Consensus 160 -------------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~---------- 214 (527)
+.......|.++.+|+.+.+.++.. .+....+. .+|+.+++..+ +.......
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 1111223466677777777765432 33333333 45666655443 11111111
Q ss_pred -------------cCCCCcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhcc------------------
Q 045837 215 -------------IGESTVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIG------------------ 263 (527)
Q Consensus 215 -------------~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~------------------ 263 (527)
+....|+.+.+..+ +.......+.++.+|+.+.+..+... .....|.
T Consensus 214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~ 291 (394)
T 4fs7_A 214 EFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEK 291 (394)
T ss_dssp CCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTT
T ss_pred ecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccc
Confidence 11223444444322 12122234555566666666554332 2222333
Q ss_pred ---CCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCC
Q 045837 264 ---WLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEG 340 (527)
Q Consensus 264 ---~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (527)
.+.+|+.+++.++ ++......|.++.+|+.++|.++ ++.+...+|.++.+|+.+++..| ++.+...+|.++.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3444444444332 22222334444555555555432 33333344555555555555444 444444455555555
Q ss_pred ceecCC
Q 045837 341 GVFDDT 346 (527)
Q Consensus 341 ~~L~l~ 346 (527)
+.+++.
T Consensus 369 ~~i~lp 374 (394)
T 4fs7_A 369 KKVELP 374 (394)
T ss_dssp CEEEEE
T ss_pred CEEEEC
Confidence 555443
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.13 E-value=6.1e-10 Score=113.39 Aligned_cols=103 Identities=9% Similarity=0.023 Sum_probs=80.2
Q ss_pred CCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCC
Q 045837 236 RSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPN 315 (527)
Q Consensus 236 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 315 (527)
..|..+.+|+++.+.++ ++..-..+|.++.+|+.++|.++ ++......|.++.+|+.++|..| ++.+...+|.++.+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 35777889999999765 55455667999999999999755 66555678999999999999877 77677789999999
Q ss_pred CcEEEecCcccCCCCCCCCCCCCCCcee
Q 045837 316 INNFTFSYNYFQGLGNECIPGSKEGGVF 343 (527)
Q Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (527)
|+.+++..+ ++.. ..+|.++.+|+.+
T Consensus 368 L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 368 LKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp CCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred CCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 999999766 3322 3467777777654
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=3e-09 Score=108.22 Aligned_cols=248 Identities=7% Similarity=0.086 Sum_probs=139.6
Q ss_pred CCCcc-eEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCc---ccccccccccCCCCCcEEEeecCcCcccCCcccccC
Q 045837 96 NSNIT-VVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR---FCGIIPESLSNWKLIYEFDVSNNRLVGSFPNVCLSW 171 (527)
Q Consensus 96 ~~~~~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 171 (527)
|.+++ .|+.+.|.++ ++.+-..+|.++.+|+.+.+.+|. ++.+-..+|.++.+|+.+.+..+ ++......|.++
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 44443 3666666543 444444566666677776666542 44444455666666665555433 332333455556
Q ss_pred CcccEEecccCCCCCCcchhhhc--cccchhhccccccccccccccCCCCcceEeccCCcCCccCCCCCCCCCCCcE---
Q 045837 172 TSLRYLDLRYNNFEGEVPRELFK--MKLDAIFLNNNRFSSWIPETIGESTVSVVTFAHNNFSGCVPRSIGNMPNVNE--- 246 (527)
Q Consensus 172 ~~L~~L~Ls~n~i~~~~p~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~--- 246 (527)
.+|+.+.+..+. . .+....+. .+|+.+.+..+ ++......|....|+.+.+..+-. ......|.++.+|+.
T Consensus 137 ~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 137 EELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALSTITS 212 (394)
T ss_dssp TTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEE
T ss_pred ccccccccccee-e-eecccceecccccccccccce-eeEeccccccccceeEEEECCccc-ccccchhhhccccceecc
Confidence 666666664332 1 22222222 34444444332 222222223333444444432211 111222333333333
Q ss_pred ----------------------------------EEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCC
Q 045837 247 ----------------------------------IILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESI 292 (527)
Q Consensus 247 ----------------------------------L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 292 (527)
+.+.+ .++..-...|.++.+|+.+++.++..+ .....|.++.+|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L 290 (394)
T 4gt6_A 213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPAL 290 (394)
T ss_dssp CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTC
T ss_pred cccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccccccc
Confidence 22221 122123446788899999999776543 555678889999
Q ss_pred cEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837 293 HRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 293 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
+.+++. +.++.+....|.++.+|+.++|.++ ++.+...+|.++.+|+.+.+..+ ++.+.
T Consensus 291 ~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~ 349 (394)
T 4gt6_A 291 QDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP 349 (394)
T ss_dssp CEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC
T ss_pred ccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh
Confidence 999996 4566666778999999999999865 77777789999999999999654 55544
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=1.5e-08 Score=102.31 Aligned_cols=130 Identities=8% Similarity=0.057 Sum_probs=93.0
Q ss_pred CcceEeccCCcCCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEecc
Q 045837 219 TVSVVTFAHNNFSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLS 298 (527)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 298 (527)
.++.+.+..+ +.......|.++.+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++......|.++.+|+.+++.
T Consensus 218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEEC
T ss_pred ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccc
Confidence 4555555433 33334455677788888888765 44344567788888888888654 443445678888899999998
Q ss_pred CCCCCCcchhhhhCCCCCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCC
Q 045837 299 YNQLTGYVSEQICKLPNINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQR 353 (527)
Q Consensus 299 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 353 (527)
++.++.+....|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus 295 ~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 295 NSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred ccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 88888777778888899999998755 66666778888889988888654 4433
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=4.6e-10 Score=112.42 Aligned_cols=204 Identities=11% Similarity=0.145 Sum_probs=109.8
Q ss_pred cceEEEEEcCCCCcCC-CC-------ccccCCCCCCCEEEccCCccc---------ccccccccCCCCCcEEEeecCcCc
Q 045837 99 ITVVAGIDLNGNDIAG-YF-------PAELGWLSDLALFHVNSNRFC---------GIIPESLSNWKLIYEFDVSNNRLV 161 (527)
Q Consensus 99 ~~~L~~L~L~~n~l~~-~~-------~~~l~~l~~L~~L~Ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~ 161 (527)
..+++.|.+....+.+ .. ...+..+++|+.|.|.++.+. +.+...+..+++|++|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3456677776555432 11 223445678888888664321 123344566778888888877311
Q ss_pred ccCCcccccCCcccEEecccCCCCCCcchhhh---ccccchhhcccc--ccccccccccCCCCcceEeccCCcCCccCCC
Q 045837 162 GSFPNVCLSWTSLRYLDLRYNNFEGEVPRELF---KMKLDAIFLNNN--RFSSWIPETIGESTVSVVTFAHNNFSGCVPR 236 (527)
Q Consensus 162 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~p~~~~---~~~L~~L~L~~n--~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 236 (527)
.+.. + .+.+|++|+|..|.+....-..+. ..+|++|+|+.+ ...+. . .+.+ +..
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~-------~----------~~~~-l~~ 244 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD-------G----------DMNV-FRP 244 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC-------S----------CGGG-TGG
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc-------h----------hHHH-HHH
Confidence 1222 2 367788888877776532222222 134444444321 10000 0 0000 000
Q ss_pred CC--CCCCCCcEEEcccCCCCCCChhhc---cCCCCCCEEEccCCcccccC----CcccCCCCCCcEEeccCCCCCCcch
Q 045837 237 SI--GNMPNVNEIILSNNDLMGCLPSEI---GWLKKLTVFDASSNSFYGSV----PQSFSSLESIHRLVLSYNQLTGYVS 307 (527)
Q Consensus 237 ~l--~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~~ 307 (527)
.+ ..+++|++|+|++|.+.+.....+ ..+++|++|||+.|.+.+.. ...+..+++|+.|+|++|.|+....
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 11 246788888888887764332222 24677888888888776432 2223445778888888887775544
Q ss_pred hhhhC-CCCCcEEEecCcc
Q 045837 308 EQICK-LPNINNFTFSYNY 325 (527)
Q Consensus 308 ~~l~~-l~~L~~L~Ls~N~ 325 (527)
..+.. + ...+++++|+
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 44443 2 3457777776
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.83 E-value=1.1e-07 Score=95.90 Aligned_cols=116 Identities=8% Similarity=-0.005 Sum_probs=90.5
Q ss_pred CCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCCcccccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCC
Q 045837 235 PRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP 314 (527)
Q Consensus 235 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 314 (527)
...+....+|+.+.+..+ +.......|.++..|+.+++..+ ++......|.++.+|+.+++..+ ++.+....|.++.
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 345566778888888665 33345567888999999999876 55455567888999999999754 5555567889999
Q ss_pred CCcEEEecCcccCCCCCCCCCCCCCCceecCCCCCCCCCC
Q 045837 315 NINNFTFSYNYFQGLGNECIPGSKEGGVFDDTSNCLAQRP 354 (527)
Q Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 354 (527)
+|+.+++.++.++.+...+|.++.+|+.+++..+ ++.+.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence 9999999999999888889999999999999755 55443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=2.2e-09 Score=107.51 Aligned_cols=131 Identities=14% Similarity=0.166 Sum_probs=78.5
Q ss_pred CCCcceEeccCCcCCccCCCCCC--CCCCCcEEEccc--CCCCCC-----Chhhc--cCCCCCCEEEccCCcccccCCcc
Q 045837 217 ESTVSVVTFAHNNFSGCVPRSIG--NMPNVNEIILSN--NDLMGC-----LPSEI--GWLKKLTVFDASSNSFYGSVPQS 285 (527)
Q Consensus 217 ~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~ 285 (527)
..+|++|+|..|.+.......+. .+++|++|+|+. |...+. +...+ ..+++|++|+|.+|.+.+.....
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 45677777777766543222332 577888888753 221111 11122 24678999999888876433222
Q ss_pred c---CCCCCCcEEeccCCCCCCcc----hhhhhCCCCCcEEEecCcccCCCCCCCCCC-CCCCceecCCCCC
Q 045837 286 F---SSLESIHRLVLSYNQLTGYV----SEQICKLPNINNFTFSYNYFQGLGNECIPG-SKEGGVFDDTSNC 349 (527)
Q Consensus 286 ~---~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~ 349 (527)
+ ..+++|++|+|+.|.|++.. ...+..+++|+.|+|++|.|++..-..+.. + ...+++++|.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2 24678999999998887642 333456688999999988876532222221 1 2456777665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=7.4e-09 Score=93.55 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=60.9
Q ss_pred CcceEeccCC-cCCcc----CCCCCCCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCccccc----CCcc
Q 045837 219 TVSVVTFAHN-NFSGC----VPRSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQS 285 (527)
Q Consensus 219 ~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~ 285 (527)
+|++|+|++| .+... +...+....+|++|+|++|.|... +...+....+|++|+|++|.|... +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 4555555555 55432 222344456677777777766532 233344456677777777766532 2334
Q ss_pred cCCCCCCcEEec--cCCCCCCc----chhhhhCCCCCcEEEecCcccC
Q 045837 286 FSSLESIHRLVL--SYNQLTGY----VSEQICKLPNINNFTFSYNYFQ 327 (527)
Q Consensus 286 ~~~l~~L~~L~L--s~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 327 (527)
+....+|++|+| ++|.|+.. +.+.+....+|++|+|++|.+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 555566777777 66666643 2334445566667776666653
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=4.5e-09 Score=94.99 Aligned_cols=116 Identities=10% Similarity=0.062 Sum_probs=90.6
Q ss_pred CCCCCCCCCcEEEcccC-CCCCC----ChhhccCCCCCCEEEccCCccccc----CCcccCCCCCCcEEeccCCCCCCc-
Q 045837 236 RSIGNMPNVNEIILSNN-DLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQSFSSLESIHRLVLSYNQLTGY- 305 (527)
Q Consensus 236 ~~l~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~- 305 (527)
..+....+|++|+|++| .+... +...+...++|++|+|++|.|... +...+....+|++|+|++|.|+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566789999999999 88743 345567789999999999999742 233455668999999999999864
Q ss_pred ---chhhhhCCCCCcEEEe--cCcccCCCC----CCCCCCCCCCceecCCCCCCC
Q 045837 306 ---VSEQICKLPNINNFTF--SYNYFQGLG----NECIPGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 306 ---~~~~l~~l~~L~~L~L--s~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~ 351 (527)
+.+.+....+|++|+| ++|.|.+.. ...+.....|+.|++++|.|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4566778889999999 889987542 233456688999999999885
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=3.2e-08 Score=94.16 Aligned_cols=79 Identities=20% Similarity=0.305 Sum_probs=43.9
Q ss_pred CCCCCcEEEcccCCCCC--CChhhccCCCCCCEEEccCCcccccCCcccCCCC--CCcEEeccCCCCCCcch-------h
Q 045837 240 NMPNVNEIILSNNDLMG--CLPSEIGWLKKLTVFDASSNSFYGSVPQSFSSLE--SIHRLVLSYNQLTGYVS-------E 308 (527)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~-------~ 308 (527)
++.+|++|+|++|.|++ .++..+..+.+|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.++ .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45567777777777664 2334455666666666666666643 1222222 66666666666654322 2
Q ss_pred hhhCCCCCcEEE
Q 045837 309 QICKLPNINNFT 320 (527)
Q Consensus 309 ~l~~l~~L~~L~ 320 (527)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 345556665554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=7.7e-07 Score=84.59 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=31.9
Q ss_pred CCCCCCEEEccCCcccc--cCCcccCCCCCCcEEeccCCCCCCcchhhhhCCC--CCcEEEecCcccCC
Q 045837 264 WLKKLTVFDASSNSFYG--SVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLP--NINNFTFSYNYFQG 328 (527)
Q Consensus 264 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~Ls~N~l~~ 328 (527)
++.+|++|+|++|+|++ .++..+..+.+|+.|+|++|+|++. ..+..+. +|++|+|++|.+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 34555555666555554 2233344555555566655555543 2222222 55555555555554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=1.9e-06 Score=76.05 Aligned_cols=82 Identities=11% Similarity=0.060 Sum_probs=33.5
Q ss_pred CCcEEEcccCCCCCCChhhccCCCCCCEEEccCCc-ccccCCcccCCC----CCCcEEeccCC-CCCCcchhhhhCCCCC
Q 045837 243 NVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSNS-FYGSVPQSFSSL----ESIHRLVLSYN-QLTGYVSEQICKLPNI 316 (527)
Q Consensus 243 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N-~l~~~~~~~l~~l~~L 316 (527)
+|++||+++|.|+..--..+.++++|++|+|++|. |+...-..+..+ .+|++|+|++| +|+...-..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444443322333444444444444442 332211222222 13445555444 2443333334444445
Q ss_pred cEEEecCc
Q 045837 317 NNFTFSYN 324 (527)
Q Consensus 317 ~~L~Ls~N 324 (527)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=2.6e-06 Score=75.21 Aligned_cols=84 Identities=15% Similarity=0.055 Sum_probs=66.1
Q ss_pred ceEEEEEcCCCCcCCCCccccCCCCCCCEEEccCCc-ccccccccccCC----CCCcEEEeecCc-CcccCCcccccCCc
Q 045837 100 TVVAGIDLNGNDIAGYFPAELGWLSDLALFHVNSNR-FCGIIPESLSNW----KLIYEFDVSNNR-LVGSFPNVCLSWTS 173 (527)
Q Consensus 100 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 173 (527)
.+|+.|||+++.++..--..+.++++|++|+|++|. |+..--..+..+ .+|++|+|++|. |++.--..+..+.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999877655677899999999999985 765444456654 379999999984 77554456778899
Q ss_pred ccEEecccCC
Q 045837 174 LRYLDLRYNN 183 (527)
Q Consensus 174 L~~L~Ls~n~ 183 (527)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.90 E-value=5.5e-06 Score=74.57 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=63.7
Q ss_pred CCcceEeccCC-cCCcc----CCCCCCCCCCCcEEEcccCCCCCC----ChhhccCCCCCCEEEccCCccccc----CCc
Q 045837 218 STVSVVTFAHN-NFSGC----VPRSIGNMPNVNEIILSNNDLMGC----LPSEIGWLKKLTVFDASSNSFYGS----VPQ 284 (527)
Q Consensus 218 ~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~ 284 (527)
.+|++|+|++| .|... +.+.+..-..|++|+|++|.|... +...+...+.|++|+|++|.|... +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 34666666654 55431 223344556777777777777632 334445567777777777777632 223
Q ss_pred ccCCCCCCcEEeccCC---CCCC----cchhhhhCCCCCcEEEecCccc
Q 045837 285 SFSSLESIHRLVLSYN---QLTG----YVSEQICKLPNINNFTFSYNYF 326 (527)
Q Consensus 285 ~~~~l~~L~~L~Ls~N---~l~~----~~~~~l~~l~~L~~L~Ls~N~l 326 (527)
.+.....|++|+|++| .+.. .+.+.+....+|++|+++.|.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3455566777777755 3332 1344566667777777766643
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.83 E-value=5.9e-06 Score=74.36 Aligned_cols=114 Identities=12% Similarity=0.018 Sum_probs=82.9
Q ss_pred CCCCCCCcEEEcccC-CCCCC----ChhhccCCCCCCEEEccCCcccccC----CcccCCCCCCcEEeccCCCCCCc---
Q 045837 238 IGNMPNVNEIILSNN-DLMGC----LPSEIGWLKKLTVFDASSNSFYGSV----PQSFSSLESIHRLVLSYNQLTGY--- 305 (527)
Q Consensus 238 l~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~--- 305 (527)
+.+-..|++|+|++| .|... +.+.+...+.|++|+|++|+|.... .+.+.....|++|+|++|+|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345578999999986 77632 4556777899999999999997432 33445668999999999999864
Q ss_pred -chhhhhCCCCCcEEEecCcc---cCCC----CCCCCCCCCCCceecCCCCCCC
Q 045837 306 -VSEQICKLPNINNFTFSYNY---FQGL----GNECIPGSKEGGVFDDTSNCLA 351 (527)
Q Consensus 306 -~~~~l~~l~~L~~L~Ls~N~---l~~~----~~~~~~~l~~L~~L~l~~N~l~ 351 (527)
+.+.+.....|++|+|++|. +... +...+.....|..|++++|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 44567777889999998763 3321 1223455678899999887754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.89 E-value=0.0016 Score=54.41 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=16.4
Q ss_pred CCCEEEccCCcccccCCcccCCCCCCcEEeccCCCC
Q 045837 267 KLTVFDASSNSFYGSVPQSFSSLESIHRLVLSYNQL 302 (527)
Q Consensus 267 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 302 (527)
+|++|+|++|+|+..-...|..+.+|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344455555544433333344444444444444443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.61 E-value=0.002 Score=53.88 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=45.4
Q ss_pred CEEEccCCccc-ccCCcccCCCCCCcEEeccCCCCCCcchhhhhCCCCCcEEEecCcccCC
Q 045837 269 TVFDASSNSFY-GSVPQSFSSLESIHRLVLSYNQLTGYVSEQICKLPNINNFTFSYNYFQG 328 (527)
Q Consensus 269 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 328 (527)
..++.++++++ ..+|..+. .+|++|+|++|+|+.+..+.|..+.+|++|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888888886 35554443 478899999999988777788888899999999987754
No 165
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=80.59 E-value=4.5 Score=36.21 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=5.5
Q ss_pred cccEEecccCCCC
Q 045837 173 SLRYLDLRYNNFE 185 (527)
Q Consensus 173 ~L~~L~Ls~n~i~ 185 (527)
+|+.-++.++.+.
T Consensus 91 ~l~~~~f~~~~l~ 103 (214)
T 2w7z_A 91 SFHRVTFLRCNLT 103 (214)
T ss_dssp EEEEEEEESCBCT
T ss_pred EEEeeEEeCCeee
Confidence 3444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.38 E-value=7.9 Score=29.96 Aligned_cols=45 Identities=9% Similarity=0.022 Sum_probs=25.7
Q ss_pred CCCCccccCCCCCCCEEEccCCcccccccccccCCCCCcEEEeecC
Q 045837 113 AGYFPAELGWLSDLALFHVNSNRFCGIIPESLSNWKLIYEFDVSNN 158 (527)
Q Consensus 113 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 158 (527)
+.+-...|.++++|+.+.|-.+ ++.+-..+|.++.+|+.+.+...
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3333345666666666666553 33344456666666666666554
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.17 E-value=13 Score=28.72 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=26.7
Q ss_pred CCccCCCCCCCCCCCcEEEcccCCCCCCChhhccCCCCCCEEEccCC
Q 045837 230 FSGCVPRSIGNMPNVNEIILSNNDLMGCLPSEIGWLKKLTVFDASSN 276 (527)
Q Consensus 230 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 276 (527)
++..-...|.++.+|+.+.|-.+ ++.+-...|.++.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33333445666667777777654 33244456666677776666554
No 168
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=67.13 E-value=15 Score=32.70 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=15.5
Q ss_pred CCcEEEeecCcCcccCCcccccCCcccEEecccCCCC
Q 045837 149 LIYEFDVSNNRLVGSFPNVCLSWTSLRYLDLRYNNFE 185 (527)
Q Consensus 149 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 185 (527)
.|+.-++.++.+.+. .|.+ .+|+...+.++.+.
T Consensus 91 ~l~~~~f~~~~l~~a---~f~~-a~l~~~~f~~~~l~ 123 (214)
T 2w7z_A 91 SFHRVTFLRCNLTGT---NFAD-SYLXDCLFEDCXAD 123 (214)
T ss_dssp EEEEEEEESCBCTTC---BCTT-CEEEEEEEESCBCT
T ss_pred EEEeeEEeCCeeeCC---CcCC-CEeeeeEEeCCCCC
Confidence 355555666655532 1211 33555555555544
No 169
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}
Probab=56.69 E-value=22 Score=32.54 Aligned_cols=6 Identities=50% Similarity=1.016 Sum_probs=2.2
Q ss_pred cCCCCc
Q 045837 107 LNGNDI 112 (527)
Q Consensus 107 L~~n~l 112 (527)
+.+..+
T Consensus 52 l~~~~~ 57 (257)
T 3du1_X 52 LTGADL 57 (257)
T ss_dssp CTTCBC
T ss_pred CCCCCC
Confidence 333333
No 170
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=51.99 E-value=27 Score=30.36 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=5.3
Q ss_pred CcEEEcccCCCC
Q 045837 244 VNEIILSNNDLM 255 (527)
Q Consensus 244 L~~L~Ls~N~l~ 255 (527)
++..++.++.+.
T Consensus 97 l~~~~f~~~~l~ 108 (200)
T 2xt2_A 97 EGALSFERCILN 108 (200)
T ss_dssp TTSEEEESCBCT
T ss_pred ccceEEEcCccc
Confidence 444444444443
No 171
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=44.71 E-value=50 Score=28.54 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=6.0
Q ss_pred CcEEEeecCcCc
Q 045837 150 IYEFDVSNNRLV 161 (527)
Q Consensus 150 L~~L~Ls~n~l~ 161 (527)
|+.-++.++.+.
T Consensus 71 l~~~~f~~~~l~ 82 (200)
T 2xt2_A 71 FMEVRFVDCKML 82 (200)
T ss_dssp EEEEEEESCBCT
T ss_pred eeeeEEEcCEec
Confidence 444555555544
Done!