BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045838
         (150 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B9EB66|PYRB_MACCJ Aspartate carbamoyltransferase OS=Macrococcus caseolyticus (strain
           JCSC5402) GN=pyrB PE=3 SV=1
          Length = 293

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 104 GAYAGLP----GDLKADKVSKASYNAYGARGS--KFLLPAIWLPVSLDCK 147
           G + GL     GD+   +V++++Y+A  + G+  KF+ P IW   SLD +
Sbjct: 141 GKFEGLKIIICGDILNSRVARSNYHALTSLGAQVKFVAPEIWQDHSLDAE 190


>sp|B8II09|HUTI_METNO Imidazolonepropionase OS=Methylobacterium nodulans (strain ORS2060
           / LMG 21967) GN=hutI PE=3 SV=1
          Length = 400

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 15/94 (15%)

Query: 37  HPPPPPPSPRLQYLG-LCAWLYEVPAYGPPGQALVAPNATNPFKTGYFQGDALAPLESIA 95
           H  PP  S R +++  +CA +  +PA    G A    +A + F     +G A +P+E+  
Sbjct: 175 HALPPEESDRDRFIDRICAEM--LPAIAQEGLA----DAVDAF----CEGIAFSPVETAR 224

Query: 96  ACLGLFGAGAYAGLPGDLKADKVSKASYNAYGAR 129
               +F A   AGLP  L AD++S     A  AR
Sbjct: 225 ----VFEAARDAGLPVKLHADQLSNLGGAALAAR 254


>sp|B9DPM9|PYRB_STACT Aspartate carbamoyltransferase OS=Staphylococcus carnosus (strain
           TM300) GN=pyrB PE=3 SV=1
          Length = 302

 Score = 30.8 bits (68), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 111 GDLKADKVSKASYNAYGARGS--KFLLPAIWLPVSLDC 146
           GD+K  +V++++Y A  A G+  KF  P  W+  SLD 
Sbjct: 153 GDIKNSRVARSNYQALTALGANVKFAAPGEWVDESLDA 190


>sp|Q5R5M1|PRDM4_PONAB PR domain zinc finger protein 4 OS=Pongo abelii GN=PRDM4 PE=2 SV=1
          Length = 801

 Score = 30.0 bits (66), Expect = 5.7,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 25/129 (19%)

Query: 30  CLFTRRRHPPPPPPSPRLQ--YL-----GLCAWLYEVPAYGPPGQALVAPNATNPFKTGY 82
           C    R +  PPPP P L+  Y      G+ ++L + P   PP    + PN+ N      
Sbjct: 83  CGLPERNYTLPPPPYPHLESSYFRTILPGILSYLADRP---PP--QYIHPNSIN------ 131

Query: 83  FQGDALAPLESIAACLGLFGAGAYAGL-PGDLKADKVSKASYNAYGARGSKFLLPAIWLP 141
             G+    + + A+ L  + +    GL PG +  D     S N +GA+    L P+    
Sbjct: 132 VDGNTALSITNNASALDPYQSNGNVGLEPGIVSID---SRSVNTHGAQS---LHPSDGHE 185

Query: 142 VSLDCKIAV 150
           V+LD  I +
Sbjct: 186 VALDTAITM 194


>sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2
           SV=1
          Length = 944

 Score = 29.6 bits (65), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 101 FGAGAYAGLPGDLKADKVSKASYNAYGARGS 131
           FG G +A  PG  +  K+S+ S++A+G  GS
Sbjct: 14  FGFGGFAITPGKKEEPKLSQQSHSAFGTAGS 44


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.142    0.461 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,490,319
Number of Sequences: 539616
Number of extensions: 3096583
Number of successful extensions: 16815
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 16446
Number of HSP's gapped (non-prelim): 256
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)