Query 045838
Match_columns 150
No_of_seqs 107 out of 139
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 06:00:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04674 Phi_1: Phosphate-indu 100.0 8.7E-79 1.9E-83 514.7 10.2 141 1-150 114-273 (273)
2 PF15232 DUF4585: Domain of un 72.4 5 0.00011 29.2 3.2 38 106-145 3-40 (75)
3 PF11305 DUF3107: Protein of u 43.1 14 0.00029 26.6 1.2 16 122-137 39-54 (74)
4 PF07265 TAP35_44: Tapetum spe 37.9 24 0.00053 27.5 1.9 21 54-78 75-96 (119)
5 COG4733 Phage-related protein, 30.5 24 0.00052 35.7 1.1 63 79-148 188-256 (952)
6 PF03128 CXCXC: CXCXC repeat; 30.4 25 0.00054 17.8 0.6 12 136-147 1-12 (14)
7 PLN00042 photosystem II oxygen 24.7 51 0.0011 28.8 1.9 27 117-143 86-112 (260)
8 smart00815 AMA-1 Apical membra 24.6 40 0.00087 29.2 1.2 20 130-149 120-139 (240)
9 cd05479 RP_DDI RP_DDI; retrope 24.5 33 0.00072 25.2 0.7 20 106-127 23-42 (124)
10 KOG3591 Alpha crystallins [Pos 24.3 26 0.00057 28.3 0.1 17 131-147 119-135 (173)
No 1
>PF04674 Phi_1: Phosphate-induced protein 1 conserved region; InterPro: IPR006766 This entry represents a family of conserved plant proteins. A conserved region in these proteins was identified in a phosphate-induced protein of unknown function [].
Probab=100.00 E-value=8.7e-79 Score=514.66 Aligned_cols=141 Identities=50% Similarity=0.921 Sum_probs=136.0
Q ss_pred CCCeeccccccCcCCCCCCCCCCcccccccccccCccCCCCCCCCCCCCCCCccCCCCcCCCCCCCCcccCCCC------
Q 045838 1 KDMIVERFCMGSRGFHDSIIVPGKVRVKSCLFTRRRHPPPPPPSPRLQYLGLCAWLYEVPAYGPPGQALVAPNA------ 74 (150)
Q Consensus 1 ~DV~VegFC~~~CG~H~~~~~~~~~~~~~~~~~~~~~~YawVGns~~qCpg~CAwPf~~P~ygP~~~pLvaPNg------ 74 (150)
+||.||+|||++||+|++++ ++ .++. ++||+|||||++||||+||||||+|+||||+++|+||||
T Consensus 114 ~DV~v~gFC~~~CG~H~~~~-~~---~~~~-----~~~YawVGns~~qCPg~CAwPf~~p~ygp~~~~l~~PNgDvGvDG 184 (273)
T PF04674_consen 114 ADVAVEGFCMSRCGFHGSTF-PS---SVGK-----RLPYAWVGNSETQCPGQCAWPFHQPIYGPQGPPLVPPNGDVGVDG 184 (273)
T ss_pred ccceecccccccccCCcCCc-cc---cccc-----ceeEEEecCccCCCCCCCCCCCcccccCCCCCCccCCCCCcchhh
Confidence 69999999999999999988 43 3455 899999999999999999999999999999999999999
Q ss_pred -------------CCCCCCccccCCCCCCchhhhcccCcccCCCCCCCCcceeecCCCCceeecccCCCceeeeeccccC
Q 045838 75 -------------TNPFKTGYFQGDALAPLESIAACLGLFGAGAYAGLPGDLKADKVSKASYNAYGARGSKFLLPAIWLP 141 (150)
Q Consensus 75 -------------TNP~~ngyyqG~~~aplEa~~aC~GiyG~GaypGy~G~l~vD~~tGaSYNa~G~~GRkfLlpa~wdP 141 (150)
||||+|||||||++|||||+|+|+||||+||||||+|+|+||++||||||++|+|||||||||||||
T Consensus 185 Mvi~iA~~LA~~~TNP~~~g~yqg~~~aplEaa~aC~giyG~Gaypgy~G~l~vD~~tGaSyN~~G~~gRkfLlpa~wdP 264 (273)
T PF04674_consen 185 MVINIAHELAGAVTNPFGNGYYQGDATAPLEAADACAGIYGSGAYPGYPGQLLVDPATGASYNANGVNGRKFLLPALWDP 264 (273)
T ss_pred HHHHHHHHHHHhhcCccccccccCCCCCccchhhhccccccCCCCCCCCcceeecCCCCceeeccccCCceEEeecccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCC
Q 045838 142 VSLDCKIAV 150 (150)
Q Consensus 142 ~t~~C~~~~ 150 (150)
+|++|+|||
T Consensus 265 ~t~~C~t~v 273 (273)
T PF04674_consen 265 ETSSCSTLV 273 (273)
T ss_pred CcCcccccC
Confidence 999999997
No 2
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=72.42 E-value=5 Score=29.16 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=26.9
Q ss_pred CCCCCcceeecCCCCceeecccCCCceeeeeccccCCCCc
Q 045838 106 YAGLPGDLKADKVSKASYNAYGARGSKFLLPAIWLPVSLD 145 (150)
Q Consensus 106 ypGy~G~l~vD~~tGaSYNa~G~~GRkfLlpa~wdP~t~~ 145 (150)
|+--.++||+|++||-=|=+. -=|.=.+--++||+|.+
T Consensus 3 ~~~tqrKvL~DP~SG~Yy~vd--~P~Qp~~k~lfDPETGq 40 (75)
T PF15232_consen 3 YPATQRKVLQDPESGQYYVVD--APVQPKTKTLFDPETGQ 40 (75)
T ss_pred CCccCccEeecCCCCCEEEEe--cCCCcceeeeecCCCCc
Confidence 556678999999998777663 22444455678999865
No 3
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=43.14 E-value=14 Score=26.62 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=12.3
Q ss_pred eeecccCCCceeeeec
Q 045838 122 SYNAYGARGSKFLLPA 137 (150)
Q Consensus 122 SYNa~G~~GRkfLlpa 137 (150)
-..+.-.+|||||||+
T Consensus 39 ~l~LtD~kGr~~lVp~ 54 (74)
T PF11305_consen 39 VLTLTDEKGRRVLVPA 54 (74)
T ss_pred eEEEEeCCCCEEEEEC
Confidence 3445568999999997
No 4
>PF07265 TAP35_44: Tapetum specific protein TAP35/TAP44; InterPro: IPR009891 This family consists of several plant tapetum specific proteins. Members of this family are found in Arabidopsis thaliana, Brassica napus and Sinapis alba. Members of this family may be involved in sporopollenin formation and/or deposition [].
Probab=37.89 E-value=24 Score=27.46 Aligned_cols=21 Identities=43% Similarity=0.869 Sum_probs=15.8
Q ss_pred cCCCCcCCCCCCCCcccCCCC-CCCC
Q 045838 54 AWLYEVPAYGPPGQALVAPNA-TNPF 78 (150)
Q Consensus 54 AwPf~~P~ygP~~~pLvaPNg-TNP~ 78 (150)
.|||| .|.|= +++-||- |||-
T Consensus 75 GWPF~--KyppF--~MvNPniptnPs 96 (119)
T PF07265_consen 75 GWPFP--KYPPF--TMVNPNIPTNPS 96 (119)
T ss_pred CCCCC--CCCCc--cccCCCCCCCCc
Confidence 79996 57764 5688887 8885
No 5
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=30.54 E-value=24 Score=35.69 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=38.6
Q ss_pred CCccccCC--CCCCchhhhcccCcccCCCCCCCC-cceeecCCC---CceeecccCCCceeeeeccccCCCCcccc
Q 045838 79 KTGYFQGD--ALAPLESIAACLGLFGAGAYAGLP-GDLKADKVS---KASYNAYGARGSKFLLPAIWLPVSLDCKI 148 (150)
Q Consensus 79 ~ngyyqG~--~~aplEa~~aC~GiyG~GaypGy~-G~l~vD~~t---GaSYNa~G~~GRkfLlpa~wdP~t~~C~~ 148 (150)
++++-|.. -++-.|+.|+=. -||.-+ =-|.||.+- =-+=|.| ++||+.-||.++||+|.+-++
T Consensus 188 ~s~~l~n~t~~~s~tEiID~k~------~YPNtAlvgl~vdaeQFgs~~t~~y~-~rGrii~VPSNYDp~trtYsG 256 (952)
T COG4733 188 TSDQLQNKTLWSSYTEIIDVKQ------CYPNTALVGLQVDAEQFGGQPTVNYH-IRGRIIQVPSNYDPETRTYSG 256 (952)
T ss_pred chhhhhcchhhhhhhheeeccc------cCCCceEEEEEEcHHHhCCcceeEEe-ecceEEeCCCCCCcccceeee
Confidence 35555554 245578887632 233211 015566431 2234555 799999999999999998765
No 6
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=30.36 E-value=25 Score=17.78 Aligned_cols=12 Identities=25% Similarity=0.880 Sum_probs=9.7
Q ss_pred eccccCCCCccc
Q 045838 136 PAIWLPVSLDCK 147 (150)
Q Consensus 136 pa~wdP~t~~C~ 147 (150)
|..||.+|=+|.
T Consensus 1 ~q~wn~~tC~C~ 12 (14)
T PF03128_consen 1 PQVWNDDTCQCE 12 (14)
T ss_pred CceecCCCcCcc
Confidence 578999998874
No 7
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=24.72 E-value=51 Score=28.83 Aligned_cols=27 Identities=26% Similarity=0.631 Sum_probs=20.6
Q ss_pred CCCCceeecccCCCceeeeeccccCCC
Q 045838 117 KVSKASYNAYGARGSKFLLPAIWLPVS 143 (150)
Q Consensus 117 ~~tGaSYNa~G~~GRkfLlpa~wdP~t 143 (150)
+++-..|..+=..|=+||+|.-|.|..
T Consensus 86 ~k~~~gF~~y~~dgY~FlyP~~W~~~k 112 (260)
T PLN00042 86 PKTNTGFLPYNGDGFKLLVPSKWNPSK 112 (260)
T ss_pred CCCCCCCeEeeCCCeEEecCCCCcccc
Confidence 444556666656889999999999875
No 8
>smart00815 AMA-1 Apical membrane antigen 1. Apical membrane antigen 1 (AMA-1) is a Plasmodium asexual blood-stage antigen. It has been suggested that positive selection operates on the AMA-1 gene in regions coding for antigenic sites.
Probab=24.58 E-value=40 Score=29.23 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=17.2
Q ss_pred CceeeeeccccCCCCccccC
Q 045838 130 GSKFLLPAIWLPVSLDCKIA 149 (150)
Q Consensus 130 GRkfLlpa~wdP~t~~C~~~ 149 (150)
..+|=+|++||.+|+.|-.|
T Consensus 120 ns~YR~PaVYD~k~~~C~IL 139 (240)
T smart00815 120 NSKYRYPFVYDSDDKLCYIL 139 (240)
T ss_pred CceeecceEEcCCCCeEEEe
Confidence 36788999999999999765
No 9
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=24.48 E-value=33 Score=25.24 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=15.4
Q ss_pred CCCCCcceeecCCCCceeeccc
Q 045838 106 YAGLPGDLKADKVSKASYNAYG 127 (150)
Q Consensus 106 ypGy~G~l~vD~~tGaSYNa~G 127 (150)
--|.+.+.++| ||||.|+..
T Consensus 23 Ing~~~~~LvD--TGAs~s~Is 42 (124)
T cd05479 23 INGVPVKAFVD--SGAQMTIMS 42 (124)
T ss_pred ECCEEEEEEEe--CCCceEEeC
Confidence 34667789998 799999753
No 10
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=24.35 E-value=26 Score=28.25 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=15.0
Q ss_pred ceeeeeccccCCCCccc
Q 045838 131 SKFLLPAIWLPVSLDCK 147 (150)
Q Consensus 131 RkfLlpa~wdP~t~~C~ 147 (150)
|||+||...||.+-++.
T Consensus 119 R~y~LP~~vdp~~V~S~ 135 (173)
T KOG3591|consen 119 RKYLLPEDVDPTSVTST 135 (173)
T ss_pred EEecCCCCCChhheEEe
Confidence 89999999999987664
Done!