Query 045838
Match_columns 150
No_of_seqs 107 out of 139
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:09:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b5b_A Defensin; antibiotic; N 33.8 14 0.00048 22.4 0.9 10 46-55 1-10 (36)
2 1rzh_H Reaction center protein 27.7 38 0.0013 28.3 2.9 39 100-138 153-194 (260)
3 2wjn_H Reaction center protein 26.6 34 0.0012 28.6 2.4 39 100-138 157-199 (258)
4 3s8i_A Protein DDI1 homolog 1; 26.1 11 0.00038 28.0 -0.6 33 92-126 17-49 (148)
5 3sri_A Apical membrane antigen 21.1 28 0.00096 30.7 0.9 20 130-149 137-156 (381)
6 2y8t_A Apical membrane antigen 17.0 30 0.001 31.0 0.1 21 129-149 151-171 (432)
7 3zve_A 3C protease; hydrolase, 16.9 37 0.0013 26.6 0.6 23 119-141 21-43 (190)
8 1w8k_A Apical membrane antigen 16.9 29 0.001 31.2 0.1 21 129-149 135-155 (447)
9 3ecq_A Protein SPR0328, endo-a 16.9 39 0.0013 34.6 0.9 12 129-140 923-934 (1531)
10 4apm_A Apical membrane antigen 16.6 32 0.0011 30.9 0.2 19 131-149 144-162 (437)
No 1
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=33.81 E-value=14 Score=22.35 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=7.8
Q ss_pred CCCCCCCccC
Q 045838 46 RLQYLGLCAW 55 (150)
Q Consensus 46 ~~qCpg~CAw 55 (150)
|+.|||+|.-
T Consensus 1 ekkcpgrctl 10 (36)
T 2b5b_A 1 EKKCPGRCTL 10 (36)
T ss_dssp CCCCSSCSSS
T ss_pred CCCCCcceeE
Confidence 5789999954
No 2
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=27.66 E-value=38 Score=28.34 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=26.8
Q ss_pred cccCCCCC-CCCcceeecCCCCc-eeecccC-CCceeeeecc
Q 045838 100 LFGAGAYA-GLPGDLKADKVSKA-SYNAYGA-RGSKFLLPAI 138 (150)
Q Consensus 100 iyG~Gayp-Gy~G~l~vD~~tGa-SYNa~G~-~GRkfLlpa~ 138 (150)
|||...=- |-.-+|+||+.+|- .|=+.-. .|||.|||+.
T Consensus 153 Vyg~DGe~iGsV~Dl~VD~~eg~VRYLVVdtGggrkVLLP~~ 194 (260)
T 1rzh_H 153 VRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQ 194 (260)
T ss_dssp EEETTSCEEEEEEEEEEETTTTEEEEEEEECTTSCEEEEEGG
T ss_pred eEcCCCCeeEEEEEEEEECCCCEEEEEEEEeCCCCEEEeeeE
Confidence 66653332 66667899997786 5544322 7899999986
No 3
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=26.61 E-value=34 Score=28.59 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=26.2
Q ss_pred cccCCCCC-CCCcceeecCCCCc-eeecccC--CCceeeeecc
Q 045838 100 LFGAGAYA-GLPGDLKADKVSKA-SYNAYGA--RGSKFLLPAI 138 (150)
Q Consensus 100 iyG~Gayp-Gy~G~l~vD~~tGa-SYNa~G~--~GRkfLlpa~ 138 (150)
|||...=- |-.-+++||+.+|- .|=+.-. .|||.|||+.
T Consensus 157 Vyg~DGe~iGsV~Dl~VD~~eg~VRYLVVdtGgggrkVLLP~~ 199 (258)
T 2wjn_H 157 VVAADGVEAGTVTDLWVDRSEHYFRYLELSVAGSARTALIPLG 199 (258)
T ss_dssp EECTTSCEEEEEEEEEEETTTTEEEEEEEEETTTTEEEEEEGG
T ss_pred eEcCCCCeeEEEEEEEEECCCCEEEEEEEEcCCCCCEEEeeeE
Confidence 55543322 55667899997776 6644322 7999999986
No 4
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=26.11 E-value=11 Score=27.99 Aligned_cols=33 Identities=18% Similarity=0.070 Sum_probs=22.4
Q ss_pred hhhhcccCcccCCCCCCCCcceeecCCCCceeecc
Q 045838 92 ESIAACLGLFGAGAYAGLPGDLKADKVSKASYNAY 126 (150)
Q Consensus 92 Ea~~aC~GiyG~GaypGy~G~l~vD~~tGaSYNa~ 126 (150)
|+.+.+.=+|=.+---|.+-+.+|| ||||+|+-
T Consensus 17 ~~~~~~~~l~v~~~Ing~~v~~LVD--TGAs~s~I 49 (148)
T 3s8i_A 17 RGSGQVTMLYINCKVNGHPLKAFVD--SGAQMTIM 49 (148)
T ss_dssp -----CCCCEEEEEETTEEEEEEEC--TTCSSCEE
T ss_pred eeccccCEEEEEEEECCEEEEEEEe--CCCCcEee
Confidence 6666676677666677888899998 79999874
No 5
>3sri_A Apical membrane antigen 1; AMA1, RON2, malaria, cell invasion; 1.60A {Plasmodium falciparum} PDB: 3srj_A 3zwz_A 2z8v_A 2z8w_A 1z40_A 2q8a_A 2q8b_A 1yxe_A
Probab=21.07 E-value=28 Score=30.71 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=17.7
Q ss_pred CceeeeeccccCCCCccccC
Q 045838 130 GSKFLLPAIWLPVSLDCKIA 149 (150)
Q Consensus 130 GRkfLlpa~wdP~t~~C~~~ 149 (150)
..+|-+|++||.+|+.|-.|
T Consensus 137 ns~YRyP~VYD~ktkeC~IL 156 (381)
T 3sri_A 137 NSNYKYPAVYDDKDKKCHIL 156 (381)
T ss_dssp TCCCCCCEEEETTTTEEEEB
T ss_pred CceeecceEEcCCCCeEEEE
Confidence 46799999999999999765
No 6
>2y8t_A Apical membrane antigen, putative; membrane protein, moving junction, invasion; HET: NAG; 1.95A {Toxoplasma gondii} PDB: 2y8r_A* 2y8s_A* 2x2z_A*
Probab=17.04 E-value=30 Score=31.01 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=18.4
Q ss_pred CCceeeeeccccCCCCccccC
Q 045838 129 RGSKFLLPAIWLPVSLDCKIA 149 (150)
Q Consensus 129 ~GRkfLlpa~wdP~t~~C~~~ 149 (150)
+..+|-+|++||.+|+.|-.|
T Consensus 151 ~Ns~YRyP~VYD~ktk~C~IL 171 (432)
T 2y8t_A 151 KATKYRYPFVYDSKKRLCHIL 171 (432)
T ss_dssp CBCSCCCCEEEETTTTEEEEB
T ss_pred CCceeecceEEcCCCCeEEEe
Confidence 338899999999999999876
No 7
>3zve_A 3C protease; hydrolase, michael inhibitor; HET: G84; 1.80A {Human enterovirus} PDB: 3zv8_A* 3zva_A* 3zvb_A* 3zv9_A* 3zvd_A* 3zvc_A* 3zvf_A* 3zvg_A*
Probab=16.94 E-value=37 Score=26.61 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=19.0
Q ss_pred CCceeecccCCCceeeeeccccC
Q 045838 119 SKASYNAYGARGSKFLLPAIWLP 141 (150)
Q Consensus 119 tGaSYNa~G~~GRkfLlpa~wdP 141 (150)
..++||+-|+.+|.+|||.-=.|
T Consensus 21 ~~G~ft~LgI~dr~~lvP~Ha~~ 43 (190)
T 3zve_A 21 EKGEFTMLGVHDRVAVIPTHASV 43 (190)
T ss_dssp TTEEEEEEEEEBTEEEEEGGGCC
T ss_pred CCEEEEEEEEeCCEEEEecCCCC
Confidence 34689999999999999976444
No 8
>1w8k_A Apical membrane antigen 1; plasmodium antigen, malaria vaccine candidate; 1.8A {Plasmodium vivax} PDB: 1w81_A 2j4w_D
Probab=16.93 E-value=29 Score=31.19 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=17.2
Q ss_pred CCceeeeeccccCCCCccccC
Q 045838 129 RGSKFLLPAIWLPVSLDCKIA 149 (150)
Q Consensus 129 ~GRkfLlpa~wdP~t~~C~~~ 149 (150)
+..+|-+|++||.+|+.|-.|
T Consensus 135 ~Ns~YRyP~VYD~ktk~C~IL 155 (447)
T 1w8k_A 135 QNSNYRHPAVYDEKEKTCHML 155 (447)
T ss_dssp --CCCCCCEEEETTTTEEEEB
T ss_pred CcceeecceEEcCCCCeEEEE
Confidence 446799999999999999765
No 9
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae}
Probab=16.90 E-value=39 Score=34.59 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=10.2
Q ss_pred CCceeeeecccc
Q 045838 129 RGSKFLLPAIWL 140 (150)
Q Consensus 129 ~GRkfLlpa~wd 140 (150)
+|-+|||||.||
T Consensus 923 ~G~~YLLPW~~d 934 (1531)
T 3ecq_A 923 DGSAYLTPWNWD 934 (1531)
T ss_dssp ETTEEEEEECBC
T ss_pred cCCcEEeccccc
Confidence 456899999997
No 10
>4apm_A Apical membrane antigen 1; membrane protein, apicomplexa, moving junction, invasion; 2.30A {Babesia divergens}
Probab=16.55 E-value=32 Score=30.86 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=17.3
Q ss_pred ceeeeeccccCCCCccccC
Q 045838 131 SKFLLPAIWLPVSLDCKIA 149 (150)
Q Consensus 131 RkfLlpa~wdP~t~~C~~~ 149 (150)
.+|-+|++||.+|+.|-.|
T Consensus 144 S~YRyP~VYD~ktkeC~IL 162 (437)
T 4apm_A 144 TKYRYPFVYDAKEEMCHIL 162 (437)
T ss_dssp CCCCCCEEEETTTTEEEEB
T ss_pred ceeecceEEcCCCCeEEEe
Confidence 5899999999999999866
Done!