Query 045838
Match_columns 150
No_of_seqs 107 out of 139
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 10:09:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045838.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045838hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eqfa2 a.29.2.1 (A:1498-1625) 13.0 23 0.0017 23.8 0.3 9 53-61 27-35 (128)
2 d2bi6h1 g.3.12.1 (H:8-31) Brom 12.6 33 0.0024 18.0 0.8 8 47-54 5-12 (26)
3 d1l6ja5 g.14.1.2 (A:332-390) G 10.9 39 0.0029 20.6 0.9 15 41-58 7-21 (59)
4 d1ur6b_ g.44.1.1 (B:) Not-4 N- 10.0 44 0.0032 18.8 0.9 18 40-58 33-50 (52)
5 d2c7na1 g.39.1.15 (A:18-73) Ra 9.8 51 0.0037 20.2 1.2 12 8-19 1-12 (56)
6 d2gycf2 d.100.1.1 (F:1-58) Rib 9.6 21 0.0015 21.7 -0.8 10 129-138 25-34 (58)
7 d1e6ia_ a.29.2.1 (A:) GCN5 {Ba 9.5 36 0.0026 22.0 0.3 10 52-61 19-28 (111)
8 d1bika2 g.8.1.1 (A:79-134) Bik 9.2 50 0.0037 19.3 0.9 19 130-148 13-31 (56)
9 d1eaka5 g.14.1.2 (A:336-393) G 8.9 53 0.0038 19.8 1.0 14 42-58 6-19 (58)
10 d2gqfa1 c.3.1.8 (A:1-194,A:343 8.9 27 0.002 24.4 -0.5 23 96-126 214-237 (253)
No 1
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.96 E-value=23 Score=23.77 Aligned_cols=9 Identities=22% Similarity=0.778 Sum_probs=7.3
Q ss_pred ccCCCCcCC
Q 045838 53 CAWLYEVPA 61 (150)
Q Consensus 53 CAwPf~~P~ 61 (150)
+||||..|.
T Consensus 27 ~a~pF~~pV 35 (128)
T d1eqfa2 27 DSWPFHHPV 35 (128)
T ss_dssp TCGGGTSCC
T ss_pred CCChhcCCC
Confidence 689998774
No 2
>d2bi6h1 g.3.12.1 (H:8-31) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=12.58 E-value=33 Score=18.03 Aligned_cols=8 Identities=25% Similarity=0.654 Sum_probs=6.3
Q ss_pred CCCCCCcc
Q 045838 47 LQYLGLCA 54 (150)
Q Consensus 47 ~qCpg~CA 54 (150)
+.|||.|.
T Consensus 5 sdcpgfck 12 (26)
T d2bi6h1 5 SDCPGFCK 12 (26)
T ss_dssp SSCCTTCS
T ss_pred ccCchHHH
Confidence 57999884
No 3
>d1l6ja5 g.14.1.2 (A:332-390) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.91 E-value=39 Score=20.57 Aligned_cols=15 Identities=7% Similarity=0.230 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCccCCCC
Q 045838 41 PPPSPRLQYLGLCAWLYE 58 (150)
Q Consensus 41 wVGns~~qCpg~CAwPf~ 58 (150)
.-||+..++ |..||-
T Consensus 7 ~GGns~G~~---C~FPF~ 21 (59)
T d1l6ja5 7 MGGNSAGEL---CVFPFT 21 (59)
T ss_dssp BSTTTTTCB---CCSSEE
T ss_pred ecCCCCCCc---cCCCEE
Confidence 468887665 999994
No 4
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.96 E-value=44 Score=18.78 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCccCCCC
Q 045838 40 PPPPSPRLQYLGLCAWLYE 58 (150)
Q Consensus 40 awVGns~~qCpg~CAwPf~ 58 (150)
.|.-+...+|| .|.-||.
T Consensus 33 ~w~~~~~~~CP-~CR~~~~ 50 (52)
T d1ur6b_ 33 RIRTDENGLCP-ACRKPYP 50 (52)
T ss_dssp HHTTTSCCBCT-TTCCBCS
T ss_pred HHHhhcCCCCC-ccCCcCC
Confidence 35555556899 7888874
No 5
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.76 E-value=51 Score=20.22 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=10.0
Q ss_pred ccccCcCCCCCC
Q 045838 8 FCMGSRGFHDSI 19 (150)
Q Consensus 8 FC~~~CG~H~~~ 19 (150)
.|...|||-|+.
T Consensus 1 lC~~gCGFyG~~ 12 (56)
T d2c7na1 1 LCKKGCGYYGNP 12 (56)
T ss_dssp CCTTCSSSCCCG
T ss_pred CCccCCCCCCCc
Confidence 589999998874
No 6
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]}
Probab=9.60 E-value=21 Score=21.73 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=7.4
Q ss_pred CCceeeeecc
Q 045838 129 RGSKFLLPAI 138 (150)
Q Consensus 129 ~GRkfLlpa~ 138 (150)
-.|+||||.-
T Consensus 25 yaRNyLiP~g 34 (58)
T d2gycf2 25 YARNFLVPQG 34 (58)
T ss_dssp TTTTTTTTTT
T ss_pred hhHHHhccCC
Confidence 4588999853
No 7
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.49 E-value=36 Score=21.99 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=8.0
Q ss_pred CccCCCCcCC
Q 045838 52 LCAWLYEVPA 61 (150)
Q Consensus 52 ~CAwPf~~P~ 61 (150)
.+||||..|.
T Consensus 19 ~~a~pF~~pv 28 (111)
T d1e6ia_ 19 AAAWPFLQPV 28 (111)
T ss_dssp TTCGGGSSCC
T ss_pred CCChhhcCCC
Confidence 3699999875
No 8
>d1bika2 g.8.1.1 (A:79-134) Bikunin from inter-alpha-inhibitor complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.19 E-value=50 Score=19.26 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=15.9
Q ss_pred CceeeeeccccCCCCcccc
Q 045838 130 GSKFLLPAIWLPVSLDCKI 148 (150)
Q Consensus 130 GRkfLlpa~wdP~t~~C~~ 148 (150)
.+..+.-|-||+++++|..
T Consensus 13 C~~~~~rwyyd~~~~~C~~ 31 (56)
T d1bika2 13 CRAFIQLWAFDAVKGKCVL 31 (56)
T ss_dssp CCCCEEEEEEETTTTEEEE
T ss_pred CCCceeEEEEECCCCcEee
Confidence 4667888999999999974
No 9
>d1eaka5 g.14.1.2 (A:336-393) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.95 E-value=53 Score=19.84 Aligned_cols=14 Identities=7% Similarity=0.209 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCccCCCC
Q 045838 42 PPSPRLQYLGLCAWLYE 58 (150)
Q Consensus 42 VGns~~qCpg~CAwPf~ 58 (150)
-||+..++ |..||-
T Consensus 6 gGns~G~~---C~FPF~ 19 (58)
T d1eaka5 6 GGNSEGAP---CVFPFT 19 (58)
T ss_dssp STTTTTCC---CCSSEE
T ss_pred cCCCCCCc---cCCCEE
Confidence 57887654 999994
No 10
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}
Probab=8.86 E-value=27 Score=24.36 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=0.0
Q ss_pred cccCcccCCCCCCCCccee-ecCCCCceeecc
Q 045838 96 ACLGLFGAGAYAGLPGDLK-ADKVSKASYNAY 126 (150)
Q Consensus 96 aC~GiyG~GaypGy~G~l~-vD~~tGaSYNa~ 126 (150)
.|+|+|-. |+++ ||..+|. ||.+
T Consensus 214 ~~~gl~~~-------ge~ldv~g~~gg-~n~~ 237 (253)
T d2gqfa1 214 QVSGLYFI-------GEVLDVTGWLGG-YNFQ 237 (253)
T ss_dssp SSTTEEEC-------GGGBSCEECTTT-HHHH
T ss_pred cCCCcEEe-------eeEEEeeeecCC-Eehh
Done!