BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045839
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 17/90 (18%)
Query: 250 LLMEYIDGIPILNL----GDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFH 305
++MEY+DG+ + ++ G KR I ++ A A Q +L ++ ++G H
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAI----EVIADACQ----ALNFSH-----QNGIIH 139
Query: 306 ADPHPGNILICKGSEVALLDYGQVKDLPDN 335
D P NILI + V ++D+G + + D+
Sbjct: 140 RDVKPANILISATNAVKVVDFGIARAIADS 169
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 17/90 (18%)
Query: 250 LLMEYIDGIPILNL----GDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFH 305
++MEY+DG+ + ++ G KR I ++ A A Q +L ++ ++G H
Sbjct: 110 IVMEYVDGVTLRDIVHTEGPMTPKRAI----EVIADACQ----ALNFSH-----QNGIIH 156
Query: 306 ADPHPGNILICKGSEVALLDYGQVKDLPDN 335
D P NI+I + V ++D+G + + D+
Sbjct: 157 RDVKPANIMISATNAVKVMDFGIARAIADS 186
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 17/90 (18%)
Query: 250 LLMEYIDGIPILNL----GDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFH 305
++MEY+DG+ + ++ G KR I ++ A A Q +L ++ ++G H
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAI----EVIADACQ----ALNFSH-----QNGIIH 139
Query: 306 ADPHPGNILICKGSEVALLDYGQVKDLPDN 335
D P NI+I + V ++D+G + + D+
Sbjct: 140 RDVKPANIMISATNAVKVMDFGIARAIADS 169
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 17/90 (18%)
Query: 250 LLMEYIDGIPILNL----GDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFH 305
++MEY+DG+ + ++ G KR I ++ A A Q +L ++ ++G H
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAI----EVIADACQ----ALNFSH-----QNGIIH 139
Query: 306 ADPHPGNILICKGSEVALLDYGQVKDLPDN 335
D P NI+I + V ++D+G + + D+
Sbjct: 140 RDVKPANIMISATNAVKVMDFGIARAIADS 169
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 17/90 (18%)
Query: 250 LLMEYIDGIPILNL----GDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFH 305
++MEY+DG+ + ++ G KR I ++ A A Q +L ++ ++G H
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAI----EVIADACQ----ALNFSH-----QNGIIH 139
Query: 306 ADPHPGNILICKGSEVALLDYGQVKDLPDN 335
D P NI+I + V ++D+G + + D+
Sbjct: 140 RDVKPANIMISATNAVKVMDFGIARAIADS 169
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 17/90 (18%)
Query: 250 LLMEYIDGIPILNL----GDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFH 305
++MEY+DG+ + ++ G KR I ++ A A Q +L ++ ++G H
Sbjct: 93 IVMEYVDGVTLRDIVHTEGPMTPKRAI----EVIADACQ----ALNFSH-----QNGIIH 139
Query: 306 ADPHPGNILICKGSEVALLDYGQVKDLPDN 335
D P NI+I + V ++D+G + + D+
Sbjct: 140 RDVKPANIMISATNAVKVMDFGIARAIADS 169
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
L+M+ + G +L++ I +G + G + + IL+ + L + + K+G H D
Sbjct: 90 LVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREV-LEGLEYLHKNGQIHRDVK 148
Query: 310 PGNILICKGSEVALLDYG 327
GNIL+ + V + D+G
Sbjct: 149 AGNILLGEDGSVQIADFG 166
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
L+M+ + G +L++ I +G + G + + IL+ + L + + K+G H D
Sbjct: 85 LVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREV-LEGLEYLHKNGQIHRDVK 143
Query: 310 PGNILICKGSEVALLDYG 327
GNIL+ + V + D+G
Sbjct: 144 AGNILLGEDGSVQIADFG 161
>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With
Sb203580
Length = 362
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 296 QMILKSGFFHADPHPGNILICKGSEVALLDYGQVKD 331
++ ++G H D HPGNIL+ +++ + D+ ++
Sbjct: 148 HVLHEAGVVHRDLHPGNILLADNNDITICDFNLARE 183
>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs
Resolution)
Length = 362
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 296 QMILKSGFFHADPHPGNILICKGSEVALLDYGQVKD 331
++ ++G H D HPGNIL+ +++ + D+ ++
Sbjct: 148 HVLHEAGVVHRDLHPGNILLADNNDITICDFNLARE 183
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 137 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXV 196
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 197 RKGDARLPL 205
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 137 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXV 196
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 197 RKGDARLPL 205
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 146 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXV 205
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 206 RKGDARLPL 214
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 146 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDXV 205
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 206 RKGDARLPL 214
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
L+MEY G +L L + +R I A + L + +A + + G+ H D
Sbjct: 138 LVMEYYVGGDLLTLLSKFGER-------IPAEMARFYLAEIVMAI-DSVHRLGYVHRDIK 189
Query: 310 PGNILICKGSEVALLDYGQVKDLPDNLRLGYARLVLAIADND 351
P NIL+ + + L D+G L + G R ++A+ D
Sbjct: 190 PDNILLDRCGHIRLADFGSCLKLRAD---GTVRSLVAVGTPD 228
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 146 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXV 205
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 206 RKGDARLPL 214
>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue
pdb|2PMN|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp-Site
Inhibitor
pdb|2PMO|X Chain X, Crystal Structure Of Pfpk7 In Complex With Hymenialdisine
Length = 348
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
++ EY++ IL + N I + I+KS+ ++ + + H D
Sbjct: 120 IIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVK 179
Query: 310 PGNILICKGSEVALLDYGQVKDLPD 334
P NIL+ K V L D+G+ + + D
Sbjct: 180 PSNILMDKNGRVKLSDFGESEYMVD 204
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 189 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 248
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 249 RKGDARLPL 257
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
+ ME++DG + D++ K+ +I ++K LT + K H D
Sbjct: 100 ICMEHMDGGSL----DQVLKKAGRIPEQILGKVSIAVIKGLTY----LREKHKIMHRDVK 151
Query: 310 PGNILICKGSEVALLDYGQVKDLPDNL 336
P NIL+ E+ L D+G L D++
Sbjct: 152 PSNILVNSRGEIKLCDFGVSGQLIDSM 178
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 191 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 250
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 251 RKGDARLPL 259
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 196 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 255
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 256 RKGDARLPL 264
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 137 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 196
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 197 RKGDARLPL 205
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 137 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 196
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 197 RKGDARLPL 205
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 146 TLEHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXV 205
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 206 RKGDARLPL 214
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 198 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 257
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 258 RKGDARLPL 266
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 146 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 205
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 206 RKGDARLPL 214
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 283 KQNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDN 335
++ IL SL + + K GF+H D P N+++ L+D+G + P +
Sbjct: 341 REKILGSLLRSLA-ALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 148 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 207
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 208 RKGDARLPL 216
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 283 KQNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDN 335
++ IL SL + + K GF+H D P N+++ L+D+G + P +
Sbjct: 341 REKILGSLLRSLA-ALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 183 TLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 242
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 243 RKGDARLPL 251
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 142 TLEHLICYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV 201
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 202 RKGDARLPL 210
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
+ ME++DG + D++ K+ +I ++K LT + K H D
Sbjct: 108 ICMEHMDGGSL----DQVLKKAGRIPEQILGKVSIAVIKGLTY----LREKHKIMHRDVK 159
Query: 310 PGNILICKGSEVALLDYGQVKDLPDNL 336
P NIL+ E+ L D+G L D++
Sbjct: 160 PSNILVNSRGEIKLCDFGVSGQLIDSM 186
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 249 VLLMEYIDGIPILNLGDEIAKRGINPGGKIAATA 282
V LM Y GIP L GDEI RGIN G ++ A
Sbjct: 521 VFLMTY-KGIPSLFYGDEIGLRGINLQGMESSRA 553
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
++M+YI+G + +L + ++R NP K A L L Y + + D
Sbjct: 83 MIMDYIEGGELFSLLRK-SQRFPNPVAKFYAAEV-----CLALEY---LHSKDIIYRDLK 133
Query: 310 PGNILICKGSEVALLDYGQVKDLPD 334
P NIL+ K + + D+G K +PD
Sbjct: 134 PENILLDKNGHIKITDFGFAKYVPD 158
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
+ ME++DG + D++ K+ +I ++K LT + K H D
Sbjct: 81 ICMEHMDGGSL----DQVLKKAGRIPEQILGKVSIAVIKGLTY----LREKHKIMHRDVK 132
Query: 310 PGNILICKGSEVALLDYGQVKDLPDNL 336
P NIL+ E+ L D+G L D++
Sbjct: 133 PSNILVNSRGEIKLCDFGVSGQLIDSM 159
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
+ ME++DG + D++ K+ +I ++K LT + K H D
Sbjct: 81 ICMEHMDGGSL----DQVLKKAGRIPEQILGKVSIAVIKGLTY----LREKHKIMHRDVK 132
Query: 310 PGNILICKGSEVALLDYGQVKDLPDNL 336
P NIL+ E+ L D+G L D++
Sbjct: 133 PSNILVNSRGEIKLCDFGVSGQLIDSM 159
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 142 TLEHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDYV 201
Query: 337 RLGYARLVL 345
R G ARL L
Sbjct: 202 RKGDARLPL 210
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 283 KQNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDN 335
++ IL SL + + K GF+H D P N+++ L+D+G + P +
Sbjct: 341 REKILGSLLRSLA-ALEKKGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
+ ME++DG + D++ K+ +I ++K LT + K H D
Sbjct: 81 ICMEHMDGGSL----DQVLKKAGRIPEQILGKVSIAVIKGLTY----LREKHKIMHRDVK 132
Query: 310 PGNILICKGSEVALLDYGQVKDLPDNL 336
P NIL+ E+ L D+G L D++
Sbjct: 133 PSNILVNSRGEIKLCDFGVSGQLIDSM 159
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
+ ME++DG + D++ K+ +I ++K LT + K H D
Sbjct: 81 ICMEHMDGGSL----DQVLKKAGRIPEQILGKVSIAVIKGLTY----LREKHKIMHRDVK 132
Query: 310 PGNILICKGSEVALLDYGQVKDLPDNL 336
P NIL+ E+ L D+G L D++
Sbjct: 133 PSNILVNSRGEIKLCDFGVSGQLIDSM 159
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
+ ME++DG + D++ K+ +I ++K LT + K H D
Sbjct: 81 ICMEHMDGGSL----DQVLKKAGRIPEQILGKVSIAVIKGLTY----LREKHKIMHRDVK 132
Query: 310 PGNILICKGSEVALLDYGQVKDLPDNL 336
P NIL+ E+ L D+G L D++
Sbjct: 133 PSNILVNSRGEIKLCDFGVSGQLIDSM 159
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
+ ME++DG + D++ K+ +I ++K LT + K H D
Sbjct: 84 ICMEHMDGGSL----DQVLKKAGRIPEQILGKVSIAVIKGLTY----LREKHKIMHRDVK 135
Query: 310 PGNILICKGSEVALLDYGQVKDLPDNL 336
P NIL+ E+ L D+G L D +
Sbjct: 136 PSNILVNSRGEIKLCDFGVSGQLIDEM 162
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
+ ME++DG + D++ K+ +I ++K LT + K H D
Sbjct: 143 ICMEHMDGGSL----DQVLKKAGRIPEQILGKVSIAVIKGLTY----LREKHKIMHRDVK 194
Query: 310 PGNILICKGSEVALLDYGQVKDLPDNL 336
P NIL+ E+ L D+G L D++
Sbjct: 195 PSNILVNSRGEIKLCDFGVSGQLIDSM 221
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 281 TAKQNILKSLTLAYGQMILKS-GFFHADPHPGNILICKGSEVALLDYGQVKDL---PDNL 336
T + I S +A G L S H D NIL+ + + V + D+G +D+ PD +
Sbjct: 197 TMEDLISYSFQVARGMEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYV 256
Query: 337 RLGYARLVL 345
R G RL L
Sbjct: 257 RKGDTRLPL 265
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 284 QNILKSLTLAYGQMI---LKSGFFHADPHPGNILICKGSEVALLDYG 327
++++KS+T Q + K H D P NILI K S + L D+G
Sbjct: 101 EHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFG 147
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 298 ILKSGFFHADPHPGNILICKGSEVALLDYG 327
I +G H D P N+ + + SE+ +LD+G
Sbjct: 147 IHSAGIIHRDLKPSNVAVNEDSELRILDFG 176
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 298 ILKSGFFHADPHPGNILICKGSEVALLDYG 327
I +G H D P N+ + + SE+ +LD+G
Sbjct: 147 IHSAGIIHRDLKPSNVAVNEDSELRILDFG 176
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 232 KSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIA 279
KSP L D+ K ++ Y+ +LNLGD + I+P G IA
Sbjct: 643 KSPPFFENLTLDLQPPKSIVDAYV----LLNLGDSVTTDHISPAGNIA 686
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 232 KSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIA 279
KSP L D+ K ++ Y+ +LNLGD + I+P G IA
Sbjct: 663 KSPPFFENLTLDLQPPKSIVDAYV----LLNLGDSVTTDHISPAGNIA 706
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 265 DEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALL 324
D+ K+ I+ G I I S+ A + K H D P N+LI +V +
Sbjct: 93 DKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMC 152
Query: 325 DYG 327
D+G
Sbjct: 153 DFG 155
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 207 GFEFDFAREADAMERIRHFLYKNNTKSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLGDE 266
G RE + R+ F + N + + D + L+ E++D +L
Sbjct: 45 GLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ----DLRTY 100
Query: 267 IAKRGINPGGKIAATAK---QNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVAL 323
+ K P G A T K + L+ L + I+ H D P NIL+ G V L
Sbjct: 101 LDK--APPPGLPAETIKDLMRQFLRGLDFLHANCIV-----HRDLKPENILVTSGGTVKL 153
Query: 324 LDYG 327
D+G
Sbjct: 154 ADFG 157
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 207 GFEFDFAREADAMERIRHFLYKNNTKSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLGDE 266
G RE + R+ F + N + + D + L+ E++D +L
Sbjct: 45 GLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ----DLRTY 100
Query: 267 IAKRGINPGGKIAATAK---QNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVAL 323
+ K P G A T K + L+ L + I+ H D P NIL+ G V L
Sbjct: 101 LDK--APPPGLPAETIKDLMRQFLRGLDFLHANCIV-----HRDLKPENILVTSGGTVKL 153
Query: 324 LDYG 327
D+G
Sbjct: 154 ADFG 157
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 207 GFEFDFAREADAMERIRHFLYKNNTKSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLGDE 266
G RE + R+ F + N + + D + L+ E++D +L
Sbjct: 45 GLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ----DLRTY 100
Query: 267 IAKRGINPGGKIAATAK---QNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVAL 323
+ K P G A T K + L+ L + I+ H D P NIL+ G V L
Sbjct: 101 LDK--APPPGLPAETIKDLMRQFLRGLDFLHANCIV-----HRDLKPENILVTSGGTVKL 153
Query: 324 LDYG 327
D+G
Sbjct: 154 ADFG 157
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 246 TRKVLLMEYIDGIPILNLGDEIAKRGINPGG---KIAATAKQNILKSLTLAYGQMILKSG 302
T+ ++MEY+ G L+L + PG AT + ILK L + + +
Sbjct: 78 TKLWIIMEYLGGGSALDL--------LEPGPLDETQIATILREILKGLDYLHSEKKI--- 126
Query: 303 FFHADPHPGNILICKGSEVALLDYGQVKDLPDN 335
H D N+L+ + EV L D+G L D
Sbjct: 127 --HRDIKAANVLLSEHGEVKLADFGVAGQLTDT 157
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
+ ME++DG + D++ K +I +L+ L AY + K H D
Sbjct: 91 ICMEHMDGGSL----DQVLKEAKRIPEEILGKVSIAVLRGL--AY--LREKHQIMHRDVK 142
Query: 310 PGNILICKGSEVALLDYGQVKDLPDNL 336
P NIL+ E+ L D+G L D++
Sbjct: 143 PSNILVNSRGEIKLCDFGVSGQLIDSM 169
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 246 TRKVLLMEYIDGIPILNLGDEIAKRGINPGG---KIAATAKQNILKSLTLAYGQMILKSG 302
T+ ++MEY+ G L+L + PG AT + ILK L + + +
Sbjct: 78 TKLWIIMEYLGGGSALDL--------LEPGPLDETQIATILREILKGLDYLHSEKKI--- 126
Query: 303 FFHADPHPGNILICKGSEVALLDYGQVKDLPDN 335
H D N+L+ + EV L D+G L D
Sbjct: 127 --HRDIKAANVLLSEHGEVKLADFGVAGQLTDT 157
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 265 DEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALL 324
D+ K+ I+ G I I S+ A + K H D P N+LI +V +
Sbjct: 137 DKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMC 196
Query: 325 DYG 327
D+G
Sbjct: 197 DFG 199
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 246 TRKVLLMEYIDGIPILNLGDEIAKRGINPGG---KIAATAKQNILKSLTLAYGQMILKSG 302
T+ ++MEY+ G L+L + PG AT + ILK L + + +
Sbjct: 90 TKLWIIMEYLGGGSALDL--------LKPGPLEETYIATILREILKGLDYLHSERKI--- 138
Query: 303 FFHADPHPGNILICKGSEVALLDYGQVKDLPDN 335
H D N+L+ + +V L D+G L D
Sbjct: 139 --HRDIKAANVLLSEQGDVKLADFGVAGQLTDT 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,392,599
Number of Sequences: 62578
Number of extensions: 535349
Number of successful extensions: 1903
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1883
Number of HSP's gapped (non-prelim): 69
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)