BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045839
(466 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86TW2|ADCK1_HUMAN Uncharacterized aarF domain-containing protein kinase 1 OS=Homo
sapiens GN=ADCK1 PE=2 SV=2
Length = 530
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 190/406 (46%), Gaps = 53/406 (13%)
Query: 61 HELAAEKIYAMCSDLGGFFLKVAQVVGKPD-LAPAAWVRRLVTLCDRAPATPYDTVQLVV 119
H +A ++ +C G F+KV Q +G D L P + L L +AP + ++ V+
Sbjct: 82 HLRSARRLCELCCANRGTFIKVGQHLGALDYLLPEEYTSTLKVLHSQAPQSSMQEIRQVI 141
Query: 120 ENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNL 179
+LG+ + ++F++FD PLG+AS+AQVH+A L D V VKVQHP VR DI +
Sbjct: 142 REDLGKEIHDLFQSFDDTPLGTASLAQVHKAVLH-DGRTVAVKVQHPKVRAQSSKDILLM 200
Query: 180 QAFALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREADAMERI----RHFLYKNNTKSPV 235
+ L +++ +F+ + E +K + E DF E E++ RHF + +
Sbjct: 201 EVLVLAVKQLFPEFEFMWLVDEAKKNLPLELDFLNEGRNAEKVSQMLRHFDF-------L 253
Query: 236 LVPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYG 295
VPR+ D+ T +VLLME++D G ++ R KI I + L Y
Sbjct: 254 KVPRIHWDLSTERVLLMEFVD-------GGQVNDRDYMERNKIDVN---EISRHLGKMYS 303
Query: 296 QMILKSGFFHADPHPGNILICKG-----SEVALLDYGQVKDLPDNLRLGYARLVLAIADN 350
+MI +GF H DPHPGN+L+ K +E+ LLD+G + L + RL Y L ++
Sbjct: 304 EMIFVNGFVHCDPHPGNVLVRKHPGTGKAEIVLLDHGLYQMLTEEFRLNYCHLWQSLIWT 363
Query: 351 DPIGAAESYRELGIETLSKCEDEQKEMFKLAQTMFDTKLPPGV---VMLQPF--SEDSSI 405
D E + LG +++ L M + V + P +ED I
Sbjct: 364 DMKRVKEYSQRLG----------AGDLYPLFACMLTARSWDSVNRGISQAPVTATEDLEI 413
Query: 406 KKIAVRAFPE----------ELFSVLRTVHLLRGLSVGLGINYSCA 441
+ A P+ ++ +L+T LLRG+ LG S +
Sbjct: 414 RNNAANYLPQISHLLNHVPRQMLLILKTNDLLRGIEAALGTRASAS 459
>sp|Q5ZMT7|ADCK1_CHICK Uncharacterized aarF domain-containing protein kinase 1 OS=Gallus
gallus GN=ADCK1 PE=2 SV=1
Length = 519
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 165/309 (53%), Gaps = 20/309 (6%)
Query: 61 HELAAEKIYAMCSDLGGFFLKVAQVVGKPD-LAPAAWVRRLVTLCDRAPATPYDTVQLVV 119
H +AE++ +C G F+KV Q +G D L P + R L L +AP + ++ V+
Sbjct: 72 HLRSAERLRELCCANRGTFIKVGQHLGALDYLLPEEYTRTLKVLHSQAPQSTRQEIEQVI 131
Query: 120 ENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNL 179
+LG+ + E+F +F+ PLG+AS+AQVH+A L+ D V VK+QHP V+ DI +
Sbjct: 132 REDLGKEIKELFVSFEDTPLGAASLAQVHKAVLQ-DGRTVAVKIQHPKVQAQSSKDIFLM 190
Query: 180 QAFALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLVPR 239
+ L +++ F+ + +E +K + E DF E E++ L KN + VPR
Sbjct: 191 EVLLLVVKQIFPDFEFMWLVEEAKKNLPLELDFLNEGRNAEKVAQML-KNF--EFLKVPR 247
Query: 240 LLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMIL 299
+ ++ TR+VLLME+++G + N + K GI+ I ++L Y +MI
Sbjct: 248 IYWELSTRRVLLMEFMEGGQV-NDKAYMEKNGIDVN---------EISRNLGKLYSEMIF 297
Query: 300 KSGFFHADPHPGNILICKGSE-----VALLDYGQVKDLPDNLRLGYARLVLAIADNDPIG 354
+GF H DPHPGN+L+ K + + LLD+G + L ++ R+ Y RL LA+ D
Sbjct: 298 VNGFVHCDPHPGNVLVKKCPDSGKAYIILLDHGLYQVLSESFRMDYCRLWLALIKADMKR 357
Query: 355 AAESYRELG 363
+ R LG
Sbjct: 358 VQKYSRRLG 366
>sp|Q9D0L4|ADCK1_MOUSE Uncharacterized aarF domain-containing protein kinase 1 OS=Mus
musculus GN=Adck1 PE=2 SV=1
Length = 525
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 189/402 (47%), Gaps = 45/402 (11%)
Query: 61 HELAAEKIYAMCSDLGGFFLKVAQVVGKPD-LAPAAWVRRLVTLCDRAPATPYDTVQLVV 119
H +A +++ +C G F+KV Q +G D L P + L L +AP + V+ V+
Sbjct: 75 HLRSARRLFELCCANRGTFIKVGQHLGALDYLLPEEYTSTLKVLHSQAPQSSMQEVRQVI 134
Query: 120 ENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNL 179
+LG+ + ++F +FD PLG+AS+AQVH+A L D V VKVQHP V+ DI +
Sbjct: 135 REDLGKEIHDLFLSFDDTPLGAASLAQVHKAVLH-DGRTVAVKVQHPKVQAQSSKDILLM 193
Query: 180 QAFALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLVPR 239
+ L +++ F+ + E +K + E DF E E++ H L + + VP+
Sbjct: 194 EVLVLAVKQLFPDFEFMWLVDEAKKNLPLELDFLNEGRNAEKVAHMLRHFDF---LKVPQ 250
Query: 240 LLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMIL 299
+ ++ T++VLLME+++ G ++ R +I I L Y +MI
Sbjct: 251 IHWELSTKRVLLMEFVE-------GGQVNDRAYMEKNQIDVN---EISCHLGKMYSEMIF 300
Query: 300 KSGFFHADPHPGNILICK-----GSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIG 354
+GF H DPHPGN+L+ K +E+ LLD+G + L + RL Y L ++ D G
Sbjct: 301 VNGFVHCDPHPGNVLVRKRPDTGKAEIVLLDHGLYQVLTEEFRLDYCHLWQSLIWTDMDG 360
Query: 355 AAESYRELGIETLSKCEDEQKEMFKLAQTMFDTKLPPGV---VMLQPFS--EDSSIKKIA 409
+ + LG +++ L M + V + P S EDS I+ A
Sbjct: 361 LKQYSQRLG----------AADLYPLFACMLTARSWDSVKQGIGQAPVSATEDSEIRNNA 410
Query: 410 VRAFPE----------ELFSVLRTVHLLRGLSVGLGINYSCA 441
PE ++ +L+T LLR + LG S +
Sbjct: 411 ACYLPEISQLLNHVPRQMLLILKTNDLLRSIETTLGTRSSAS 452
>sp|Q54TR5|ABKB_DICDI Probable serine/threonine-protein kinase abkB OS=Dictyostelium
discoideum GN=abkB PE=3 SV=1
Length = 668
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 114/425 (26%), Positives = 208/425 (48%), Gaps = 48/425 (11%)
Query: 33 IYAGYKAFQVRVSFVKDVQKQDAMW----EIQHELAAEKIYAMCSDLGGFFLKVAQVVGK 88
+YAG+K ++ + + D + +I H+LAA+ + +C G F+KVAQ++
Sbjct: 209 LYAGFKITFYYKYYLMGLNRGDEGFAENIQIAHKLAAKAMVDLCYQNKGIFIKVAQIIAS 268
Query: 89 PD-LAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGRSVSEMFETFDRDPLGSASIAQV 147
D + P +++ L D AP ++ V+ + + E G+ +MF F+R P+ SAS+AQV
Sbjct: 269 LDHILPQEYIKSLSIFQDHAPFVTFEEVEKLFKIETGKHPDDMFIDFERLPINSASLAQV 328
Query: 148 HRARLRGDKDDVV---VKVQHPGVRDLMMTDIRNLQAFALYMQKTDIKFDLFSITKEMEK 204
H+A+L+ + D+++ VKVQ+PG+ + D+ +L Y+ F I E
Sbjct: 329 HKAKLKLENDEIIEVAVKVQYPGLMNKFQKDMDSLDNVLTYITLFFPSFQFSWILGEASS 388
Query: 205 QIGFEFDFAREADAMERIRHFLYKNNTKSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLG 264
+ E DF EA E+++ N S +P++ + T+++L ME+I G+ I N
Sbjct: 389 CLSQELDFVNEAKNSEKMKQLFIGNQQLS---IPKVYWNHTTKRILTMEFIHGVRIDN-- 443
Query: 265 DEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPHPGNILICKG----SE 320
+ G++ K+ K+ + + + Q I GF H+DPHPGN+L+ K +
Sbjct: 444 ----REGLD---KLGIDLKE-LYYLFSDIFAQQIFVHGFLHSDPHPGNLLVRKTPNGKPD 495
Query: 321 VALLDYGQVKDLPDNLRLGYARLVLAIADNDP---------IGAAESYRELGIETLSKCE 371
+ LLD+G K + +N+RL + L ++ D +GA + LGI
Sbjct: 496 LVLLDHGLYKKIDENVRLDFCHLWKSLCLGDAKTSEFYAERLGAGIYAKHLGILLNLNPS 555
Query: 372 DEQKEMFKLAQTMFDTKLPPGVVMLQPFSEDSSIKKIAVRAFPEELFSVLRTVHLLRGLS 431
++ + + + + D L VV+ + ++ P+E+ VL+T +L+R ++
Sbjct: 556 KSRENLRNMKRELKDQTL---VVINE-----------ILKNLPKEILLVLKTNNLIRQIT 601
Query: 432 VGLGI 436
GI
Sbjct: 602 THFGI 606
>sp|Q6INL7|ADCK1_XENLA Uncharacterized aarF domain-containing protein kinase 1 OS=Xenopus
laevis GN=adck1 PE=2 SV=1
Length = 520
Score = 155 bits (391), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 163/314 (51%), Gaps = 29/314 (9%)
Query: 61 HELAAEKIYAMCSDLGGFFLKVAQVVGKPD-LAPAAWVRRLVTLCDRAPATPYDTVQLVV 119
H +A ++ +C G F+KV Q + + L P + + L L +AP TP+ V V+
Sbjct: 75 HLRSAHRLLDLCCFNRGTFIKVGQHLAALEYLVPPEYTKTLSVLHSQAPCTPFTDVVQVI 134
Query: 120 ENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNL 179
+LG+ +SE+FE F++ PLG+AS+AQVHRA L+ D V VKVQHP V+ DI +
Sbjct: 135 REDLGKEISEVFEEFEKTPLGAASLAQVHRAVLQ-DGRKVAVKVQHPKVQAQSSRDILIM 193
Query: 180 QAFALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLVPR 239
+ ++K +F+ + +E +K + E DF E E++ + ++ S + +PR
Sbjct: 194 EVLLHVVKKIFPQFEFMWLIEEAKKNLPLELDFQNEGRNAEKMSSIV---SSFSFLRIPR 250
Query: 240 LLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMIL 299
+ ++ T++VL+MEY++ G ++ R +I + L L Y +MI
Sbjct: 251 IYWELSTKRVLVMEYME-------GGQVNDREYMKRNQIDVNKVSHALGKL---YSEMIF 300
Query: 300 KSGFFHADPHPGNILICK-----GSEVALLDYGQVKDLPDNLRLGYARL--VLAIADNDP 352
GF H DPHPGN+L+ + E+ LLD+G + L ++ RL Y L L AD +
Sbjct: 301 VHGFVHCDPHPGNVLVRQNPENCAPEIILLDHGLYQVLTESFRLDYCSLWQALIAADKER 360
Query: 353 I-------GAAESY 359
I GA E Y
Sbjct: 361 IRIYSQRLGAGELY 374
>sp|Q5M7P6|ADCK1_XENTR Uncharacterized aarF domain-containing protein kinase 1 OS=Xenopus
tropicalis GN=adck1 PE=2 SV=1
Length = 523
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/297 (32%), Positives = 159/297 (53%), Gaps = 20/297 (6%)
Query: 61 HELAAEKIYAMCSDLGGFFLKVAQVVGKPD-LAPAAWVRRLVTLCDRAPATPYDTVQLVV 119
H +A ++ +C G F+KV Q +G + L P + + L L +AP TP+ V V+
Sbjct: 75 HFRSAHRLLDLCCANRGTFIKVGQHLGALEYLVPPEYTKTLSVLHSQAPCTPFPDVVQVI 134
Query: 120 ENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNL 179
+LG+ +SE+F F+ PLG+AS+AQVHRA L+ D V VKVQHP V+ DI +
Sbjct: 135 REDLGKEISEVFVEFEEKPLGAASLAQVHRAVLQ-DGRKVAVKVQHPKVQAQSARDILLM 193
Query: 180 QAFALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLVPR 239
+ ++K +F+ + +E +K + E DF E E++ + ++ S + +PR
Sbjct: 194 EVLLHAVKKIFPQFEFMWLIEEAKKNLPLELDFENEGRNAEKMSAIV---SSFSFLRIPR 250
Query: 240 LLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMIL 299
+ ++ T++VL+MEY++G + + E KR ++A ++L Y +MI
Sbjct: 251 IYWELSTKRVLVMEYMEGGQVND--REYMKRNQIDINQVA--------RALGQLYSEMIF 300
Query: 300 KSGFFHADPHPGNILICKG-----SEVALLDYGQVKDLPDNLRLGYARLVLAIADND 351
GF H DPHPGN+L+ + E+ LLD+G + L ++ RL Y L A+ D
Sbjct: 301 VHGFVHCDPHPGNVLVRQNPETLVPEIILLDHGLYQVLTESFRLDYCSLWQALIAAD 357
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 195/396 (49%), Gaps = 38/396 (9%)
Query: 64 AAEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENE 122
+ E + +LG F+K+ Q++ +PDL P +++ L L + P + ++ + E
Sbjct: 32 SPENLRKAFEELGPTFIKIGQILSTRPDLLPLPYIKELSKLQNNVPPENFIDIENLFFEE 91
Query: 123 LGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAF 182
L ++ F FD+ P+GSASIAQVH A L+ D V+VK+Q PG+ ++M TD+ ++
Sbjct: 92 LSSTIDNTFLYFDKTPIGSASIAQVHDAILK-DGRFVIVKIQRPGIAEMMKTDLSIIKKL 150
Query: 183 ALYMQK---TDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLVPR 239
L + K TD D E+ E DF E + +++ + N V P
Sbjct: 151 -LNITKTKFTDALIDPKEAIDELFISTTQELDFINEINNIKKFKKL---NEDVKFVRTPY 206
Query: 240 LLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMIL 299
+ + T K+++ME I GI I NL K+ +N G + K+ LTL+Y + +
Sbjct: 207 TIDKLCTEKIIVMEKIVGIKIDNL-----KKLLNEGYDLEELGKK-----LTLSYFKQVF 256
Query: 300 KSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAESY 359
+ GFFH DPHPGN+LI + + + +D+G + + +L++ +LA+A +D
Sbjct: 257 QDGFFHGDPHPGNLLI-RENHICYIDFGIMGTISKSLKISLNDAILAVAYHDVNKMISVI 315
Query: 360 RELGIETLSKCEDEQKEMFKLAQTMFDTKLPPGV------VMLQP---FSEDSSIKKIAV 410
+G++ K + +++ + +FD + + VMLQ S++++IK
Sbjct: 316 MSIGVK---KGYVNRNSLYESIEYLFDNYISVSLKNIKISVMLQEIFQISKNNNIK---- 368
Query: 411 RAFPEELFSVLRTVHLLRGLSVGLGINYSCAEQWRP 446
P+EL +L++ ++ G+ + S + P
Sbjct: 369 --LPKELTMLLKSTLMIEGVIARISPELSIVDVLIP 402
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 141 bits (356), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 152/307 (49%), Gaps = 19/307 (6%)
Query: 66 EKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELG 124
E + + +LG F++K+ Q++ +PDL P ++ L L P P+ ++ +++ E
Sbjct: 44 EVLTKILVELGPFYIKLGQLLSTRPDLLPPRYINALTALQSNVPPLPWSAIEDLLQREFP 103
Query: 125 RSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVR------DLMMTDIRN 178
+ + E F+ + +P+ + SI Q+HRA L+ + V +KV+ PG+ L++ D+
Sbjct: 104 QPLGETFQEIESEPIAAGSIGQIHRAVLQSG-ETVAIKVKRPGIDVIVEQDSLLIKDVAE 162
Query: 179 LQAFALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSP--VL 236
L A + Q +D+ + E + + E +F EA +R L K P ++
Sbjct: 163 LLALTEFGQN----YDIVKLADEFTQTVKAELNFDTEAAYTNNLRTNLAKTTWFDPNQLV 218
Query: 237 VPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQ 296
+P++ ++ +K L++E++DG+PIL A P K A K+ I L A+ Q
Sbjct: 219 IPKVYWELTNQKFLVLEWLDGVPILT-----ADLTQPPSDKDIAEKKKEITTLLFRAFFQ 273
Query: 297 MILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAA 356
+ GFFHADPHPGNI +AL+D G V L R ++LAI D D A
Sbjct: 274 QLYVDGFFHADPHPGNIFYLADGRLALIDCGMVGRLDPRTRQLLTEMLLAIVDLDAKRCA 333
Query: 357 ESYRELG 363
+ EL
Sbjct: 334 QLTVELS 340
>sp|Q9ASX5|Y5520_ARATH Uncharacterized aarF domain-containing protein kinase At5g05200,
chloroplastic OS=Arabidopsis thaliana GN=At5g05200 PE=1
SV=1
Length = 540
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 138/259 (53%), Gaps = 14/259 (5%)
Query: 75 LGGFFLKVAQVVGK-PDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGRSVSEMFET 133
+G ++K+ Q + P L P +V+ D+AP P++ ++ +++ ELGR + ++E
Sbjct: 136 MGATYIKLGQFIASAPTLFPPEYVKEFQNCFDKAPPVPFEEIRKILQEELGRPIESVYEY 195
Query: 134 FDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQKTDIKF 193
D P+ SASIAQVH ARLRG ++DVV+KV PG+ D ++ D+ + + + +F
Sbjct: 196 VDPTPIASASIAQVHGARLRGSQEDVVIKVLKPGIEDFLVADLNFIYVVSRIFEFLSPEF 255
Query: 194 ---DLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLVPRLLPDMVTRKVL 250
L I K++ + + E DF +EA +E + +L PR+ +R+VL
Sbjct: 256 SRTSLVGIVKDIRESMLEEVDFNKEAQNIESFKRYLETMGLTGQATAPRVYKYCSSRRVL 315
Query: 251 LMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPHP 310
ME + G+P+ +L D I + ++ + +++ +L + +G + L FHAD H
Sbjct: 316 TMERLYGVPLTDL-DSIR--------SLVSSPENSLITALNVWFGSL-LACESFHADVHA 365
Query: 311 GNILICKGSEVALLDYGQV 329
GN+ + + + LD+G V
Sbjct: 366 GNLWLLRDGRIGFLDFGIV 384
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 113/389 (29%), Positives = 183/389 (47%), Gaps = 39/389 (10%)
Query: 75 LGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGRSVSEMFET 133
LG F+KV Q+ + DL PA +V L L D PA Y+ ++E ELG+ +++++ +
Sbjct: 95 LGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKPIAKLYRS 154
Query: 134 FDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQ---KTD 190
FD PL +AS+ QVH+A+L +DVVVKVQ PG++ L D+ L+ A Y Q K
Sbjct: 155 FDPVPLAAASLGQVHKAQLH-TGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQNHPKWG 213
Query: 191 IKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLVPRLLPDMVTRKVL 250
D I +E K + E D+ RE + + R + V VPR+ + ++L
Sbjct: 214 RGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDW---VKVPRVYWRYTSTQIL 270
Query: 251 LMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPHP 310
+EY+ GI I + D + G+ ++ + + AY +L GFFHADPHP
Sbjct: 271 TLEYLPGIKISHY-DALEAAGLE---------RKELAQLGARAYLFQLLNHGFFHADPHP 320
Query: 311 GNILIC-KGSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAESYRELGIETLSK 369
GN+ + + E+ D+G + ++ + + + +A+ + S LG L +
Sbjct: 321 GNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALG--ALKE 378
Query: 370 CEDEQKEMFKLAQTMFDTKLPPGVVMLQPFSEDSSIKKIAVR----------AFPEELFS 419
ED + + Q + D M +PF E+ SI KI+ FP
Sbjct: 379 TED-MGPIRRSVQFLLDN------FMDKPF-EEQSITKISDDLYEIAYDQPFRFPATFTF 430
Query: 420 VLRTVHLLRGLSVGLGINYSCAEQWRPIA 448
V+R L G+ GL +++ +P A
Sbjct: 431 VMRAFSTLEGVGKGLDPDFNFMAVAQPFA 459
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 192/405 (47%), Gaps = 39/405 (9%)
Query: 50 VQKQDAMWEIQHELAAEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAP 108
+++ D M++++ A ++ + +LG ++K+AQ V +PDL P ++ L L D+
Sbjct: 109 LERSDQMFKVR----AAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDELSLLQDQI- 163
Query: 109 ATPYDTVQL--VVENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHP 166
TP+ T ++E+ELG + E+F +P+ +AS+ QV++ARLR V VKVQ P
Sbjct: 164 -TPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAVKVQRP 222
Query: 167 GVRDLMMTDIRNLQAFALYMQKTD-IKFDLFSITKEMEKQIGFEFDFAREADAMERIRHF 225
GVR + D L+ A ++K DL ++ E + E D+ EA + R
Sbjct: 223 GVRAAIALDTLILRYIAGLIKKAGRFNSDLEAVVDEWATSLFKEMDYLNEAQNGIKFRK- 281
Query: 226 LYKNNTKSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLGD-EIAKRGINPGGKIAATAKQ 284
LY VLVP++ + T KVL+ME+++G + + D + + G+
Sbjct: 282 LYGGIKD--VLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDLYLVEVGV------------ 327
Query: 285 NILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDNLRLGYARLV 344
++ Q+ L+ GF+HADPHPGN L ++A LD+G + D LR G+
Sbjct: 328 ------YCSFNQL-LEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGDFRPELRDGFMEAC 380
Query: 345 LAIADNDPIGAAESYRELGIETLSKCEDEQKEMFKLAQTMFDTKLPPGVVMLQPFSEDSS 404
L + + D A+ + LG L E+ + K +F + GV +
Sbjct: 381 LHLVNRDFKALAKDFVTLG---LLPPTAEKSAVTKALTDVFQDAISRGVRNISFGDLLGD 437
Query: 405 IKKIAVR---AFPEELFSVLRTVHLLRGLSVGLGINYSCAEQWRP 446
+ K R P V+R++ +L G+++G+ NY P
Sbjct: 438 LGKTMYRFKFRIPPYFSLVIRSLAVLEGIAIGISPNYKVLGSTYP 482
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/401 (26%), Positives = 195/401 (48%), Gaps = 31/401 (7%)
Query: 65 AEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENEL 123
A ++ + ++LG ++KV Q + +PDL P ++ L TL D+ P+ P + +E EL
Sbjct: 104 AIQLRELLTNLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEEL 163
Query: 124 GRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFA 183
G E++ +P+ +AS+ QV++ +L+ + V VKVQ P + + DI +++ +
Sbjct: 164 GAPAEEIYAELSPEPIAAASLGQVYKGKLKTG-EAVAVKVQRPDLVRRITLDIYIMRSLS 222
Query: 184 LYMQKT--DIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLVPRLL 241
L+ +++ ++ DL +IT E+ ++ E ++ +EA E+ LY + + VP +
Sbjct: 223 LWARRSVKRLRSDLVAITDELASRVFEEMNYYQEAINGEKFAQ-LY--GSLPEIYVPSIY 279
Query: 242 PDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKS 301
R+VL ME+++GI + N+ I +GI+ + Q L+ L L+
Sbjct: 280 WQYTGRRVLTMEWVEGIKLTNI-KAIQAQGID-ATHLVEVGVQCSLRQL--------LEH 329
Query: 302 GFFHADPHPGNILICKGSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAESYRE 361
GFFHADPHPGN+L +A LD+G + + R G V+ + + D A+ Y +
Sbjct: 330 GFFHADPHPGNLLAMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVK 389
Query: 362 LGIETLSKCEDEQKEMFKLAQTMFDTKLPPGVVMLQPFSEDSSIKKIAVRAFPEELFS-- 419
L K + + K + +F L V L F + + FP + +
Sbjct: 390 LD---FLKPDTDLKPIIPALGQVFGNALGASVAELN-FKSITDQMSAMMYEFPFRVPAYY 445
Query: 420 --VLRTVHLLRGLSVGLGINYSCAEQWRPIAEEALYLAGRI 458
++R++ L G+++G+ N+ + P Y+A R+
Sbjct: 446 ALIIRSMVTLEGIAIGIDPNFKVLSKAYP------YIAKRL 480
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 168/342 (49%), Gaps = 20/342 (5%)
Query: 24 FQFWVRAAEIYAGYKAFQVRVSFVKDVQKQDAMWEIQHELAAEKIYAMCSDLGGFFLKVA 83
F+ R+ EI F +++ QKQ + + + A E + + + LG F+K+
Sbjct: 110 FKALRRSLEILGALGGFALKLGID---QKQGNLEKNMKKRAIE-LRRIFTRLGPTFVKLG 165
Query: 84 Q-VVGKPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGRSVSEMFETFDRDPLGSA 142
Q + +PDL P ++ L L D P P +E EL S+ +F + +P+ +A
Sbjct: 166 QGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLETIFSSVSPEPIAAA 225
Query: 143 SIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQK-TD-IKFDLFSITK 200
S+ QV++A+LR V VKVQ PG+ + + D ++ + K D I D+ ++
Sbjct: 226 SLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKYVDFITTDVLTLID 285
Query: 201 EMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLVPRLLPDMVTRKVLLMEYIDGIPI 260
E ++ E ++ +EA R + LY + K+ VLVP + D +RKVL ME+++G
Sbjct: 286 EFACRVYQELNYVQEAQNARRFKK-LYAD--KADVLVPDIFWDYTSRKVLTMEWVEGT-- 340
Query: 261 LNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSE 320
L +++A + G K+ I SL + +L+ GFFHADPHPGN+L +
Sbjct: 341 -KLNEQLAIE--SQGLKVLDLVNTGIQCSL-----RQLLEYGFFHADPHPGNLLATPDGK 392
Query: 321 VALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAESYREL 362
+A LD+G + + P+ R V+ + + D A Y L
Sbjct: 393 LAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYAL 434
>sp|O04212|Y2090_ARATH Putative ABC1 protein At2g40090 OS=Arabidopsis thaliana
GN=At2g40090 PE=2 SV=2
Length = 538
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 164/350 (46%), Gaps = 30/350 (8%)
Query: 33 IYAGYKAFQVRVSFVKDVQKQDAMWEIQHEL---AAEKIYAMCSDLGGFFLKVAQVVGKP 89
+ A AF S + + +++HE+ +A+K+ +C GG ++K+ Q +G+
Sbjct: 54 VTAASIAFDYEYSLLGLAEGSSERAKVKHEVHLRSAQKLQELCFKNGGIYIKLGQHIGQL 113
Query: 90 D-LAPAAWVRRL-VTLCDRAPATPYDTVQLVVENELGRSVSEMFETFDRDPLGSASIAQV 147
+ L P +VR + ++ ++ P + Y+ V V + E+G ++F FD P+ SAS+AQV
Sbjct: 114 EYLVPEEYVRTMRESMLNKCPISSYEQVCEVFKKEVGEMPDQVFAEFDPVPIASASLAQV 173
Query: 148 HRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQKTDIKFDLFSITKEMEKQIG 207
H AR D V VKVQH + D D + + + FD + EM + +
Sbjct: 174 HVARTH-DGKKVAVKVQHAHMTDTAAADTAAVGVLVNTLHRIFPSFDYRWLLDEMSESLP 232
Query: 208 FEFDFAREADAMERIRHFLYK--NNTKSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLGD 265
E DF EA E+ K + V P + ++ T K+L ME++DG + N D
Sbjct: 233 KELDFLVEAKNNEKCLDNFRKLSPHIAEYVYAPTIYWNLSTSKLLTMEFMDGAQV-NDVD 291
Query: 266 EIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPHPGNILI---------- 315
+I K GI P + K ++ + +M+ K GF H DPH N+++
Sbjct: 292 KIRKLGIQP---------YEVSKLVSQTFAEMMFKHGFVHCDPHAANLIVRPDPSGKRNI 342
Query: 316 --CKGSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAESYRELG 363
+ ++ +LD+G K+L N R YA L A+ +D E +LG
Sbjct: 343 YGKRKPQLVILDHGLYKELDFNTRFNYASLWKALVFSDAKAIKEHSEKLG 392
>sp|Q80V03|ADCK5_MOUSE Uncharacterized aarF domain-containing protein kinase 5 OS=Mus
musculus GN=Adck5 PE=2 SV=2
Length = 582
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/420 (25%), Positives = 204/420 (48%), Gaps = 37/420 (8%)
Query: 61 HELAAEKIYAMCSDLGGFFLKVAQ-VVGKPDLAPAAWVRRLVTLCDRAPATPYDTVQLVV 119
H+ AA+ + A GG ++K+ Q + L P +++ L L D+A + V +
Sbjct: 127 HQRAADALVAGAIRNGGLYVKLGQGLCSFNHLLPTEYIQTLRVLEDKALTRGFREVDELF 186
Query: 120 ENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNL 179
+ +E+F+ FD +P+ +AS+AQVHRA+L D DV VKVQ+ +RD D++ L
Sbjct: 187 LEDFQALPNELFQEFDYEPMAAASLAQVHRAKLH-DGTDVAVKVQYIDLRDRFDGDVQTL 245
Query: 180 QAFALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREADAMER----IRHFLYKNNTKSPV 235
+ ++ F + ++++ + E DF E ER ++HF Y V
Sbjct: 246 ELLLRLVELMHPSFGFSWVLQDLKGTLVQELDFENEGRNAERCAQELKHFHY-------V 298
Query: 236 LVPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYG 295
++PR+ D +++VL ++ +G + ++ G K A Q++ K L +
Sbjct: 299 VIPRVHWDRSSKRVLTADFCNGCKVNDM----------EGIKSQGLAVQDVAKKLIQTFA 348
Query: 296 QMILKSGFFHADPHPGNILICKG----SEVALLDYGQVKDLPDNLRLGYARLVLAIADND 351
+ I +GF H+DPHPGN+L+ KG +E+ LLD+G + L + R +L AI D
Sbjct: 349 EQIFHTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRD 408
Query: 352 PIGAAESYRELGIET-LSKCEDEQKEMFKLAQTMFDTKL--PPGVVMLQPFSEDS--SIK 406
+ LG++ + E + +L Q ++ + L +Q + + I
Sbjct: 409 NAAMKKHAAALGVQDYMLFSEVLMQRPVRLGQ-LWGSHLISREEAAYMQDMAREHFDGIM 467
Query: 407 KIAVRAFPEELFSVLRTVHLLRGLSVGLGINYSCAEQWRPIAEEALYLAGRIKGWLFQLI 466
++ ++A P + VLR ++ +R ++ LG + +++ +A+ A++ R+ G +Q I
Sbjct: 468 EV-LKALPRPMLLVLRNINTVRAINSNLG---TPVDRYFLMAKSAVWGWSRLVGAAYQGI 523
>sp|O60111|YG62_SCHPO ABC1 family protein C15C4.02 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBC15C4.02 PE=3 SV=2
Length = 557
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 169/360 (46%), Gaps = 51/360 (14%)
Query: 45 SFVKDVQKQDAMWEIQHELAAEKIYAMCSDLGGFFLKVAQVVGKPD-LAPAAWVRRLVTL 103
S+ + ++Q A+ E H AE+ + + GG ++K+ Q + + P W +V L
Sbjct: 92 SYASEEERQLALSEC-HLRCAERSLKVFEENGGIYIKIGQHLSAMGYVIPKEWTNTMVKL 150
Query: 104 CDRAPATPYDTVQLVVENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKV 163
DR P+T + + + G+ + E F+ FD LG AS+AQVH+ARL+ V VKV
Sbjct: 151 QDRCPSTSLKDIDHLFRVDTGKGLDETFDEFDPIALGVASLAQVHKARLKDSDVWVAVKV 210
Query: 164 QHPGVR-----DLMMTD--IRNLQAFALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREA 216
QHP V DL MT + ++ F F L + E+E+ + E DF REA
Sbjct: 211 QHPSVSLNSPLDLSMTRWVFKAIKTFF-------PDFKLMWLADEIERSLPQELDFTREA 263
Query: 217 -DAMERIRHFLYKNNTKSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLG--DEIAKRGIN 273
+++E HF + + + + VP ++ ++L+MEY+ G I NL DE
Sbjct: 264 KNSIETKEHFAHLSTS---LYVPEVM--WSKPRILVMEYVAGARIDNLSFMDE------- 311
Query: 274 PGGKIAATAKQNILKSLTLAYGQMIL-KSGFFHADPHPGNILI---------CKGSEVAL 323
+ ++ + + + +MI K G H DPH GN+LI + E+ L
Sbjct: 312 -----HSISRDLVSVDICHIFNEMIFGKGGHLHCDPHGGNVLIRSKPKNSKSPRNYEIVL 366
Query: 324 LDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAESYRELGIETLSKCEDEQKEMFKLAQT 383
LD+G +D+P L++ YA + L I I E + + ++ DE +F A T
Sbjct: 367 LDHGLYRDIPHELQVDYANMWLNI-----INFNEKNLKFYAKKVANVSDENFPIFATAIT 421
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 166/346 (47%), Gaps = 25/346 (7%)
Query: 66 EKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELG 124
+++ LG F+K QV+ + DL P + L L DR P D + VVE LG
Sbjct: 50 QRVRLALESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLG 109
Query: 125 RSVSEMFETFDRDPLGSASIAQVHRARLR----GDKDDVVVKVQHPGVRDLMMTDIRNLQ 180
R V E+F FD P+ SAS+AQVH+A LR G +V VKV PG+ ++ D+ ++
Sbjct: 110 RKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMR 169
Query: 181 AFALYMQK---TDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLV 237
A +++K + + E +K + E D EA ++R ++ ++V
Sbjct: 170 TLAGWVEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDM---LIV 226
Query: 238 PRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQM 297
P + D +R+VL +E++ GIP+ + + + + G++ Q + + +
Sbjct: 227 PEVFYDYSSREVLTLEWMHGIPVGQI-ERLREAGVD---------LQKLSRFGVEIFFTQ 276
Query: 298 ILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAE 357
+ + GFFHAD HPGNI + LD+G V L D + A LA + D A
Sbjct: 277 VFRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVAT 336
Query: 358 SYRELG-IETLSKCEDEQKEMFKLAQTMFDTKLPP---GVVMLQPF 399
++ E G + ++ E+ + + + + +F+ L G+V+L+ F
Sbjct: 337 AHIESGWVPRDTRAEELEAAVRTVCEPIFEKPLSEISFGMVLLRLF 382
>sp|Q3MIX3|ADCK5_HUMAN Uncharacterized aarF domain-containing protein kinase 5 OS=Homo
sapiens GN=ADCK5 PE=2 SV=2
Length = 580
Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 113/413 (27%), Positives = 182/413 (44%), Gaps = 39/413 (9%)
Query: 61 HELAAEKIYAMCSDLGGFFLKVAQ-VVGKPDLAPAAWVRRLVTLCDRAPATPYDTVQLVV 119
H+ AA+ + A GG ++K+ Q + L P + R L L DRA + V +
Sbjct: 127 HQRAADALVAGAISNGGLYVKLGQGLCSFNHLLPPEYTRTLRVLEDRALKRGFQEVDELF 186
Query: 120 ENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNL 179
+ E+F+ FD P+ +AS+AQVHRA+L D V VKVQ+ +RD DI L
Sbjct: 187 LEDFQALPHELFQEFDYQPIAAASLAQVHRAKLH-DGTSVAVKVQYIDLRDRFDGDIHTL 245
Query: 180 QAFALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREADAMER----IRHFLYKNNTKSPV 235
+ ++ F + ++++ + E DF E ER + HF Y V
Sbjct: 246 ELLLRLVEVMHPSFGFSWVLQDLKGTLAQELDFENEGRNAERCARELAHFPY-------V 298
Query: 236 LVPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYG 295
+VPR+ D +++VL ++ G + N + I +G+ A +I + L A+
Sbjct: 299 VVPRVHWDKSSKRVLTADFCAGCKV-NDVEAIRSQGL---------AVHDIAEKLIKAFA 348
Query: 296 QMILKSGFFHADPHPGNILICKG----SEVALLDYGQVKDLPDNLRLGYARLVLAIADND 351
+ I +GF H+DPHPGN+L+ KG +E+ LLD+G + L + R +L AI D
Sbjct: 349 EQIFYTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLEEKDRAALCQLWRAIILRD 408
Query: 352 PIGAAESYRELGIET-LSKCEDEQKEMFKLAQTMFDTKLP--PGVVMLQPFSEDSSIKKI 408
LG++ L E + +L Q L M+ E
Sbjct: 409 DAAMRAHAAALGVQDYLLFAEMLMQRPVRLGQLWGSHLLSREEAAYMVDMARERFEAVMA 468
Query: 409 AVRAFPEELFSVLRTVHLLRGLSVGLGINYSCAEQWRPIAEEALYLAGRIKGW 461
+R P + VLR ++ +R ++V LG P+ L ++GW
Sbjct: 469 VLRELPRPMLLVLRNINTVRAINVALGA---------PVDRYFLMAKRAVRGW 512
>sp|B3PH50|UBIB_CELJU Probable ubiquinone biosynthesis protein UbiB OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiB PE=3 SV=1
Length = 552
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 160/339 (47%), Gaps = 33/339 (9%)
Query: 65 AEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENEL 123
E++ C DLG F+K Q++ +PDL PA V L L D Q +VE+ L
Sbjct: 49 GERLRRACEDLGPIFVKFGQLLSTRPDLVPADIVLELNHLQDNVTPFSKGEFQRIVESSL 108
Query: 124 GRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFA 183
G SV+E+F +F+ +PL SAS+AQVH A L+ D +VV+KV PG+ ++ DI L A
Sbjct: 109 GASVAEVFASFNIEPLASASVAQVHTAVLK-DGREVVIKVIRPGIDKVIAQDIALLLRVA 167
Query: 184 LYMQKTDI---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPR 239
+++ + + I ++ I E D REA ++R +N SP+L VP
Sbjct: 168 RWVENNTLDGKRLHPVEIVEDYRTTIFDELDLQREAANGSQLR----RNFLNSPLLYVPE 223
Query: 240 LLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSL----TLAYG 295
+ + VL+ME I GIP+ +L A A+Q +K L +
Sbjct: 224 VYWEYTRTNVLVMERIYGIPVTDLA--------------ALNAQQTDMKKLAERGVEIFF 269
Query: 296 QMILKSGFFHADPHPGNILIC----KGSEVALLDYGQVKDLPDNLRLGYARLVLAIADND 351
+ + FFHAD HPGNI + + +D V L + AR +LA+ D
Sbjct: 270 TQVFEHNFFHADMHPGNIFVAHEHPSAPQYIAVDMAIVGSLTRADQYYLARNLLAMFRRD 329
Query: 352 PIGAAESYRELG-IETLSKCEDEQKEMFKLAQTMFDTKL 389
AE + E G + + + E+ + + + + +F+ L
Sbjct: 330 YRQVAELHVESGWVPSHVRVEELEAAVRTVCEPIFEKPL 368
>sp|Q06567|YL253_YEAST ABC1 family protein YLR253W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YLR253W PE=1 SV=1
Length = 569
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 151/314 (48%), Gaps = 41/314 (13%)
Query: 60 QHELAAEKIYAMCSDL--------GGFFLKVAQVVGKPD-LAPAAWVRRLVTLCDRAPAT 110
+ E+A K + MC+ + GG ++K+ Q +G L P W ++ L D P +
Sbjct: 96 EREVALNKCHKMCALITLHALRSNGGIYIKLGQHIGAMTYLLPKEWTDTMIPLQDHCPES 155
Query: 111 PYDTVQLVVENELGRSVSEMFETFDRDPLGSASIAQVHRARLR---GDKDDVVVKVQHPG 167
Y+ + + + +LG S+ +MF F++ P+G AS+AQVH A+L+ G V VK QHP
Sbjct: 156 TYEEIDELFKEDLGTSIEDMFLEFNKTPIGVASLAQVHVAKLKNSDGKGSSVAVKCQHPS 215
Query: 168 VRDLMMTDIRNLQAFALYMQKTDIKFDLFSIT---KEMEKQIGFEFDFAREADAMERIRH 224
+++ + D+ + + D+ F + +T E++ I E +F +EA+ E+ RH
Sbjct: 216 LKEFIPLDVMLTRTV---FELLDVFFPDYPLTWLGDELQSSIYVELNFTKEAENAEKTRH 272
Query: 225 FLYKNNTKSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQ 284
+ K ++ + +P+++ +++L+MEY+ G + +L + I GI ++
Sbjct: 273 YFSKFKKQTALKIPKVIESH--KRILIMEYVGGKRLDDL-EYIDSHGI---------SRS 320
Query: 285 NILKSLTLAYGQMILKSGF-FHADPHPGNILI----------CKGSEVALLDYGQVKDLP 333
+ L+ + MI H DPH GN+ I E+ L D+G +
Sbjct: 321 EVSSCLSHIFNNMIFTPNVGIHCDPHGGNLAIRSVKPAKDNGYHNFEIVLFDHGLYRYPS 380
Query: 334 DNLRLGYARLVLAI 347
R YA+ L++
Sbjct: 381 TRTRRLYAKFWLSL 394
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 178/352 (50%), Gaps = 26/352 (7%)
Query: 58 EIQHELAAEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDT-- 114
++++E A ++ LG F+K QV+ +PDL P + L L D+ P P+D
Sbjct: 44 KLKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVP--PFDARL 101
Query: 115 VQLVVENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMT 174
+ +E LG+S+ +++ F+ +P+ SASIAQVH+ARL + V VKV P + L+
Sbjct: 102 SREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSG-ERVAVKVLRPNLLPLIEQ 160
Query: 175 DIRNLQAFALYMQK---TDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNT 231
D+ ++ A ++++ + + E +K + E D REA ++ + +N
Sbjct: 161 DLSLMRFGAAWVERLFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNM 220
Query: 232 KSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLT 291
++VP++ D T VL +E++DG P+ ++ ++ GI+ K+A +
Sbjct: 221 ---LIVPKVFYDYCTSDVLTIEWMDGTPVADIA-KLKADGID-LHKLADYGVE------- 268
Query: 292 LAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDNLRLGYARLVLAIADND 351
+ + + GFFHAD HPGNIL+ + LD+G V L D + A LA + D
Sbjct: 269 -IFFTQVFRDGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRD 327
Query: 352 PIGAAESYRELG-IETLSKCEDEQKEMFKLAQTMFD---TKLPPGVVMLQPF 399
A ++ E G + ++ E+ + + + + +F+ +++ G+V+++ F
Sbjct: 328 YRRVATAHIESGWVPADTRAEELEAAVRAVCEPVFNKPISQISFGLVLMRLF 379
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 134/282 (47%), Gaps = 26/282 (9%)
Query: 65 AEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENEL 123
E++ LG F+K QV+ + DL P L L DR P +VE L
Sbjct: 50 GERLRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERSL 109
Query: 124 GRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDD---VVVKVQHPGVRDLMMTDIRNLQ 180
G+ +S +F FD P+ SASIAQVH A LRG DD V VKV PG+ ++ +D+ ++
Sbjct: 110 GKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALMR 169
Query: 181 AFALYMQK---TDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSP-VL 236
A +M+K + + E +K + E D REA ++R +N KS +L
Sbjct: 170 DVATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLR----RNFAKSELLL 225
Query: 237 VPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQ 296
VP + D T +V +ME + G+ + + DE+ G++ + + +
Sbjct: 226 VPEVFWDWCTSEVFVMERMHGVRVSH-ADELRAAGVD---------THKLARDGVEIFFT 275
Query: 297 MILKSGFFHADPHPGNILICKGSE----VALLDYGQVKDLPD 334
+ + GFFHAD HPGNIL+ E LD+G V L +
Sbjct: 276 QVFRDGFFHADMHPGNILVSVAPESLGRYIALDFGIVGALSE 317
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/364 (28%), Positives = 172/364 (47%), Gaps = 36/364 (9%)
Query: 60 QHELAAEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLV 118
HE ++ LG F+K QV+ + DL P L L DR P P D +
Sbjct: 45 HHEPRGVRLRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAA 104
Query: 119 VENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRN 178
V LGR + E+F +FD DP+ SASIAQVH L D +V VKV P V +++ D+
Sbjct: 105 VVQSLGRPIEEVFASFDADPVASASIAQVHFGVLH-DGREVAVKVLRPNVLNIIEADLAL 163
Query: 179 LQAFALYMQKTDI---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPV 235
L+ A ++++ + + E + + E D REA ++R + + +
Sbjct: 164 LRVAAAWLERLSPDGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDL---I 220
Query: 236 LVPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYG 295
++P ++ D+ + +VL+ME + G+PI + + + GI+ I A+ + T+ +
Sbjct: 221 MLPEMIWDLSSAEVLVMERMHGVPISQI-ETLRAAGID----IPKLARDGV----TIFFT 271
Query: 296 QMILKSGFFHADPHPGNILICK-----GSEVALLDYGQVKDLPDNLRLGYARLVLAIADN 350
Q + + GFFHAD HPGNI++ G +A LD+G V L + A+ LA
Sbjct: 272 Q-VFRDGFFHADMHPGNIMVSTAPATFGRYIA-LDFGIVGTLDSRDKEYLAQNFLAFFRR 329
Query: 351 DPIGAAESYRELG-IETLSKCEDEQKEMFKLAQTMFDTKLPPGVVMLQPFSEDSSIKKIA 409
D AE + E G + ++ ++ + + + + FD L +D S+ ++
Sbjct: 330 DYRRVAELHIESGWVPASTRVDELEGAVRAVCEPHFDRPL-----------KDISLGQVL 378
Query: 410 VRAF 413
+R F
Sbjct: 379 LRLF 382
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 131/258 (50%), Gaps = 22/258 (8%)
Query: 65 AEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPA-TPYDTVQLVVENE 122
A ++ DLG F+K Q++ + DL P L L DR P P +V L+ E +
Sbjct: 57 AVRLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALI-EEQ 115
Query: 123 LGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAF 182
LG V E F FD +PL SAS+AQVH A+L+ ++VVVKV PG++ ++ D+ L F
Sbjct: 116 LGARVDEAFARFDSEPLASASVAQVHAAQLKTG-EEVVVKVVRPGLKAVIRQDLAWLYLF 174
Query: 183 ALYMQKTDI---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VP 238
A ++ + L + + EK I E D REA +++ +N SP+L VP
Sbjct: 175 ARLAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLK----RNFEGSPLLYVP 230
Query: 239 RLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMI 298
++ D KVL+ME I G+P+ +L ++ G + A++ + T +
Sbjct: 231 QIYWDWCRPKVLVMERIYGVPVTDLAA-----LVDQGTDLKLLAERGVEIFFT-----QV 280
Query: 299 LKSGFFHADPHPGNILIC 316
+ FFHAD HPGNI +
Sbjct: 281 FRDSFFHADMHPGNIFVS 298
>sp|Q54P00|ABKD_DICDI Probable serine/threonine-protein kinase abkD OS=Dictyostelium
discoideum GN=abkD PE=2 SV=1
Length = 695
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 157/321 (48%), Gaps = 31/321 (9%)
Query: 58 EIQHELAAEKIYAMCSDLGGFFLKVAQVVGKPD-LAPAAWVRRLVTLCDRAPATPYDTVQ 116
+I H+ +A+ I +C GG ++K Q + + + P + + L L D+AP + V+
Sbjct: 241 KICHQESADLILDLCLTNGGLYIKAGQYIASLNHILPIQYTKTLSVLQDQAPWRDFYEVE 300
Query: 117 LVVENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDI 176
V +LG + + F FDR P+ +AS+AQVHRA + + ++V VKVQ+ ++ DI
Sbjct: 301 SVFLKDLGNAPNHYFSDFDRLPIAAASLAQVHRA-ITKEGEEVAVKVQYVDLQRNFDGDI 359
Query: 177 --RNLQAFALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSP 234
N+ + M D +F+ + +EM+ + E DF++EAD ER L NN
Sbjct: 360 FTHNVLLTLVNMAFPDFEFNW--MAEEMKNVLIKELDFSQEADNAERAAQDLSSNNN--- 414
Query: 235 VLVPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAY 294
+P++ ++++L E+I G I N+ + I G T Q ++ +
Sbjct: 415 AYIPKVFRPYSSKRILTTEFIHGCKINNV------QAIRSMGLSEKTVSQRFMEIMC--- 465
Query: 295 GQMILKSGFFHADPHPGNILICKG------SEVALLDYGQVKDLPDNLRLGYARLV--LA 346
+ I F H DPH GN+L+ + ++ LLD+G ++ + RL + L L
Sbjct: 466 -EQIFIHAFVHVDPHAGNVLVRQHPNHPNQPQIVLLDHGLYREYDEEFRLNFCNLYKNLV 524
Query: 347 IADNDPIGAAESY-RELGIET 366
+ +N + E Y + LG++
Sbjct: 525 LCNNKKV---EKYSKALGVQN 542
>sp|P96936|Y647_MYCTU Uncharacterized protein Rv0647c/MT0675 OS=Mycobacterium
tuberculosis GN=Rv0647c PE=3 SV=1
Length = 488
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 152/324 (46%), Gaps = 19/324 (5%)
Query: 28 VRAAEIYA-GYKAFQVRVSFVKDVQKQDAMWEIQHELAAEKIYAMCSDLGGFFLKVAQVV 86
V AA + A G++ + V F+ + ++ W+ + +++ +DLG ++K Q++
Sbjct: 59 VEAARVAATGWQVTRTAVRFIGRLPRKGP-WQ---QKVIKELPQTFADLGPTYVKFGQII 114
Query: 87 GK-PDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGRSVSEMFETFDRDPLGSASIA 145
P + R L DR P D V + ELG + +F +F+ +P SASIA
Sbjct: 115 ASSPGAFGESLSREFRGLLDRVPPAKTDEVHKLFVEELGDEPARLFASFEEEPFASASIA 174
Query: 146 QVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFA--LYMQKTDIKFDLFSITKEME 203
QVH A LR ++VVVK+Q PG+R + D++ L+ FA + + K + + +
Sbjct: 175 QVHYATLRSG-EEVVVKIQRPGIRRRVAADLQILKRFAQTVELAKLGRRLSAQDVVADFA 233
Query: 204 KQIGFEFDFAREADAMERIRHFLYKNNTKSPVLVPRLLPDMVTRKVLLMEYIDGIPILNL 263
+ E DF EA +ME L+ + + VP++ D T +VL ME + GI I N
Sbjct: 234 DNLAEELDFRLEAQSMEAWVSHLHASPLGKNIRVPQVHWDFTTERVLTMERVHGIRIDNA 293
Query: 264 GDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPHPGNILICKGSEVAL 323
I K G + ++K+L + + L+ G FH D H GN+ + + +
Sbjct: 294 A-AIRKAGFD---------GVELVKALLFSVFEGGLRHGLFHGDLHAGNLYVDEAGRIVF 343
Query: 324 LDYGQVKDLPDNLRLGYARLVLAI 347
D+G + + R LV A+
Sbjct: 344 FDFGIMGRIDPRTRWLLRELVYAL 367
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 157/326 (48%), Gaps = 25/326 (7%)
Query: 74 DLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGRSVSEMFE 132
DLG F+K Q++ + DL P L L D+ P P D ++E +LG VS++F
Sbjct: 65 DLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAPVSQLFA 124
Query: 133 TFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQKTDI- 191
FD PL SAS+AQVH A+L+ ++VVVKV PG++ ++ D+ L A ++
Sbjct: 125 RFDSQPLASASVAQVHAAQLKSG-EEVVVKVVRPGLKPVIRQDLAWLFLLARIAERASAD 183
Query: 192 --KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLLPDMVTRK 248
+ + + EK I E D REA ++R +N SP+L VP++ D+ +
Sbjct: 184 ARRLRPVEVVSDYEKTIFDELDLLREAANASQLR----RNFEGSPLLYVPQVYWDLCRHQ 239
Query: 249 VLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADP 308
VL+ME I G+P+ +L +R K+ A I + + + FFHAD
Sbjct: 240 VLVMERIYGVPVTDLATLADQRT---DMKLLAERGVEI-------FFTQVFRDSFFHADM 289
Query: 309 HPGNILICKGS----EVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAESYRELG- 363
HPGNI + + + +D G + L D + AR ++A D A+ + + G
Sbjct: 290 HPGNIFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGW 349
Query: 364 IETLSKCEDEQKEMFKLAQTMFDTKL 389
+ +K + + + + + +F+ L
Sbjct: 350 VPADTKVNEFEAAIRTVCEPIFEKPL 375
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 177/353 (50%), Gaps = 28/353 (7%)
Query: 58 EIQHELAAEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDT-- 114
++++E A ++ LG F+K QV+ +PDL P + L L D+ P P+D
Sbjct: 44 KLKNEPPAVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVP--PFDARL 101
Query: 115 VQLVVENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMT 174
+ +E LG+S+ +++ F+ +P+ SASIAQVH+ARL + V VKV P + ++
Sbjct: 102 SREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARLHSG-EQVAVKVLRPNLLPVIEQ 160
Query: 175 DIRNLQAFALYMQK---TDIKFDLFSITKEMEKQIGFEFDFARE-ADAMERIRHFLYKNN 230
D+ ++ A ++++ + + E +K + E D RE A+A + R+F
Sbjct: 161 DLSLMRFGAGWVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNF----Q 216
Query: 231 TKSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSL 290
++VP++ D T VL +E++DG P+ +IAK + G + A +
Sbjct: 217 NSDMLIVPKVFYDYCTSDVLTIEWMDGTPV----SDIAKLKAD-GIDLHKLADYGVEIFF 271
Query: 291 TLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDNLRLGYARLVLAIADN 350
T + + GFFHAD HPGNIL+ + LD+G V L D + A LA +
Sbjct: 272 T-----QVFRDGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNR 326
Query: 351 DPIGAAESYRELG-IETLSKCEDEQKEMFKLAQTMFD---TKLPPGVVMLQPF 399
D A ++ E G + ++ E+ + + + + +F+ +++ G+V+++ F
Sbjct: 327 DYRRVATAHIESGWVPADTRAEELEAAVRAVCEPVFNKPISQISFGLVLMRLF 379
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 157/333 (47%), Gaps = 25/333 (7%)
Query: 67 KIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGR 125
++ DLG F+K Q++ + DL P L L D+ P P + +E +LG
Sbjct: 59 RLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGA 118
Query: 126 SVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALY 185
+ ++F F+R+PL SAS+AQVH ARL+ ++VVVKV P + ++ +DI L A
Sbjct: 119 KIEQVFARFEREPLASASVAQVHAARLKSG-EEVVVKVIRPNLEPVIRSDIAWLFILARL 177
Query: 186 MQKTDI---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLL 241
++ + + + EK I E D REA ++R +N SP+L VP++
Sbjct: 178 AERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLR----RNFEGSPLLYVPQVY 233
Query: 242 PDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKS 301
D KVL+ME I GIP+ +L +R A A++ + T + +
Sbjct: 234 WDWCRPKVLVMERIYGIPVTDLETLRDQR-----TDFKALAERGVEIFFT-----QVFRD 283
Query: 302 GFFHADPHPGNILICK----GSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAE 357
FFHAD HPGNI + + +D G V L D + AR ++A D A+
Sbjct: 284 SFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQ 343
Query: 358 SYRELG-IETLSKCEDEQKEMFKLAQTMFDTKL 389
+ + G + +K D + + + + +F+ L
Sbjct: 344 LHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPL 376
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 157/333 (47%), Gaps = 25/333 (7%)
Query: 67 KIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGR 125
++ DLG F+K Q++ + DL P L L D+ P P + +E +LG
Sbjct: 59 RLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGA 118
Query: 126 SVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALY 185
+ ++F F+R+PL SAS+AQVH ARL+ ++VVVKV P + ++ +DI L A
Sbjct: 119 KIEQVFARFEREPLASASVAQVHAARLKSG-EEVVVKVIRPNLEPVIRSDIAWLFILARL 177
Query: 186 MQKTDI---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLL 241
++ + + + EK I E D REA ++R +N SP+L VP++
Sbjct: 178 AERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLR----RNFEGSPLLYVPQVY 233
Query: 242 PDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKS 301
D KVL+ME I GIP+ +L +R A A++ + T + +
Sbjct: 234 WDWCRPKVLVMERIYGIPVTDLETLRDQR-----TDFKALAERGVEIFFT-----QVFRD 283
Query: 302 GFFHADPHPGNILICK----GSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAE 357
FFHAD HPGNI + + +D G V L D + AR ++A D A+
Sbjct: 284 SFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQ 343
Query: 358 SYRELG-IETLSKCEDEQKEMFKLAQTMFDTKL 389
+ + G + +K D + + + + +F+ L
Sbjct: 344 LHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPL 376
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 157/333 (47%), Gaps = 25/333 (7%)
Query: 67 KIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGR 125
++ DLG F+K Q++ + DL P L L D+ P P + +E +LG
Sbjct: 59 RLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGA 118
Query: 126 SVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALY 185
+ ++F F+R+PL SAS+AQVH ARL+ ++VVVKV P + ++ +DI L A
Sbjct: 119 KIEQVFARFEREPLASASVAQVHAARLKSG-EEVVVKVIRPNLEPVIRSDIAWLFILARL 177
Query: 186 MQKTDI---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLL 241
++ + + + EK I E D REA ++R +N SP+L VP++
Sbjct: 178 AERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLR----RNFEGSPLLYVPQVY 233
Query: 242 PDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKS 301
D KVL+ME I GIP+ +L +R A A++ + T + +
Sbjct: 234 WDWCRPKVLVMERIYGIPVTDLETLRDQR-----TDFKALAERGVEIFFT-----QVFRD 283
Query: 302 GFFHADPHPGNILICK----GSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAE 357
FFHAD HPGNI + + +D G V L D + AR ++A D A+
Sbjct: 284 SFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQ 343
Query: 358 SYRELG-IETLSKCEDEQKEMFKLAQTMFDTKL 389
+ + G + +K D + + + + +F+ L
Sbjct: 344 LHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPL 376
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 157/333 (47%), Gaps = 25/333 (7%)
Query: 67 KIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGR 125
++ DLG F+K Q++ + DL P L L D+ P P + +E +LG
Sbjct: 59 RLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGA 118
Query: 126 SVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALY 185
+ ++F F+R+PL SAS+AQVH ARL+ ++VVVKV P + ++ +DI L A
Sbjct: 119 KIEQVFARFEREPLASASVAQVHAARLKSG-EEVVVKVIRPNLEPVIRSDIAWLFILARL 177
Query: 186 MQKTDI---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLL 241
++ + + + EK I E D REA ++R +N SP+L VP++
Sbjct: 178 AERVSSEARRLHPVEVVSDYEKTIVDELDLLREAANASQLR----RNFEGSPLLYVPQVY 233
Query: 242 PDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKS 301
D KVL+ME I GIP+ +L +R A A++ + T + +
Sbjct: 234 WDWCRPKVLVMERIYGIPVTDLETLRDQR-----TDFKALAERGVEIFFT-----QVFRD 283
Query: 302 GFFHADPHPGNILICK----GSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAE 357
FFHAD HPGNI + + +D G V L D + AR ++A D A+
Sbjct: 284 SFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQ 343
Query: 358 SYRELG-IETLSKCEDEQKEMFKLAQTMFDTKL 389
+ + G + +K D + + + + +F+ L
Sbjct: 344 LHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPL 376
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 157/332 (47%), Gaps = 50/332 (15%)
Query: 18 RPWQRSFQFWVRAAEIYAGYKAFQVRVSFVKDVQKQ--DAMWEIQHELAAEKIYAMCSDL 75
RPW+R R ++ + ++ R++ + Q++ A W +Q L L
Sbjct: 21 RPWRRQLAV-TRVFLLFVFFLSWD-RLTAPRSAQRRYRRAQWLVQQLLY----------L 68
Query: 76 GGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQL--VVENELGRSVSEMFE 132
G F+K+ Q + + D+ PA ++ L DR P P+D+ Q V+E EL ++ E+F+
Sbjct: 69 GPTFIKIGQSLSTRADIIPAEYIEAFTQLQDRVP--PFDSRQAIAVIEQELHGAIDEIFQ 126
Query: 133 TFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDI-----------RNLQA 181
F+ PL SAS+ QVHRA L + VVVKVQ PG+ L+ D R L
Sbjct: 127 QFEVTPLASASLGQVHRAVL-PTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPG 185
Query: 182 FALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSP-VLVPRL 240
F QK +I+ +I +E + E D+ E ER R +N P V VP +
Sbjct: 186 FRRLAQKYEIE----AIYQEFFSLLFLEIDYIHEGKNAERFR----QNFADYPRVRVPEI 237
Query: 241 LPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILK 300
TR VL +EY+ GI + + + GIN ++++ AY + +L
Sbjct: 238 YWQYTTRMVLTLEYLPGIKV-DDRQALETAGIN---------LDLVIQTGICAYLKQLLV 287
Query: 301 SGFFHADPHPGNILICKGSEVALLDYGQVKDL 332
GFF +DPHPGN+ + ++ D+G + ++
Sbjct: 288 DGFFQSDPHPGNMAVDSQGDLIFYDFGTMAEV 319
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 130/271 (47%), Gaps = 21/271 (7%)
Query: 65 AEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENEL 123
A ++ + +LG F+K QV+ +PD+ ++ L L D P P + ++E EL
Sbjct: 167 ARQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEEL 226
Query: 124 GRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDI---RNLQ 180
G+ + +F + +AS+ QV+RA LR +DV +KVQ P + ++ D+ R L
Sbjct: 227 GQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLA 286
Query: 181 AF--ALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLVP 238
+F +QK +L I E +++ E D+ EA +E FL V +P
Sbjct: 287 SFLNGFSLQKLGCNAEL--IVDEFGEKLLEELDYTLEARNIE---DFLENFKDDPTVKIP 341
Query: 239 RLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMI 298
+ ++ +VL+ME+IDGI + I GI+ G + A + +
Sbjct: 342 GVYKNLCGPRVLVMEWIDGIRCTD-PQAIKDAGIDLNGFLTVGVS---------AALRQL 391
Query: 299 LKSGFFHADPHPGNILICKGSEVALLDYGQV 329
L+ G FH DPHPGNI + +A +D+G V
Sbjct: 392 LEFGLFHGDPHPGNIFAMQDGRIAYVDFGNV 422
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 131/251 (52%), Gaps = 26/251 (10%)
Query: 74 DLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQL---VVENELGRSVSE 129
DLG F+K Q++ + DL P L+ L DR P P+D+ QL ++E +LG+ +SE
Sbjct: 65 DLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVP--PFDS-QLSVKLIEEQLGKKISE 121
Query: 130 MFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQKT 189
+F FD +PL SAS+AQVH A+L+ ++VVVKV PG++ ++ D+ L A +K
Sbjct: 122 VFSRFDVEPLASASVAQVHAAQLKTG-EEVVVKVIRPGLKPIIAQDLAWLFILARAAEKV 180
Query: 190 DIKFDLF---SITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLLPDMV 245
L + + EK I E D REA +++ +N SP+L VP++ D
Sbjct: 181 SADARLLHPVDVVSDYEKTIYDELDLLREAANASQLK----RNFEGSPLLYVPQVYWDWC 236
Query: 246 TRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFH 305
KVL+ME I GI + +L +R K + + + + Q + + FFH
Sbjct: 237 RPKVLVMERIYGIQVTDLATLADQR---------TDMKMLAERGVEIFFTQ-VFRDSFFH 286
Query: 306 ADPHPGNILIC 316
AD HPGNI +
Sbjct: 287 ADMHPGNIFVS 297
>sp|O42653|YF9E_SCHPO ABC1 family protein C10F6.14c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC10F6.14c PE=3 SV=1
Length = 535
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 23/306 (7%)
Query: 48 KDVQKQDAMWEIQHELAAEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDR 106
K K DA+ H+ A++++ GG ++K+ Q++ + + P A+ + + D
Sbjct: 97 KKADKIDAL----HQRVAQRLFKTIYKNGGLYIKMGQIIAMQSNNLPEAYGKAFQGMFDN 152
Query: 107 APATPYDTVQLVVENELGRSVSEMFETFDRDPLGSASIAQVHRARL-RGDKDDVVVKVQH 165
AP ++ +Q + + + GR V E+F + ++ SASIAQVHRA L G+K V VK+Q
Sbjct: 153 APQVEWEELQDIFKEQYGRPVEEVFASIEKRAAASASIAQVHRAVLPSGEK--VAVKIQK 210
Query: 166 PGVRDLMMTDIRNLQAFALYMQKTDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHF 225
P V M D+ + K L+ + +++ E DF EA+ E R
Sbjct: 211 PDVAKQMSWDLLVYKYMMYVYDKWIFHIPLYFTVDYVSERLRSEVDFTTEANNSEHAREG 270
Query: 226 LYKNN-TKSPVLVPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQ 284
+ + + + + +P++ ++ ++V++ E+ DGIP L D+ A A +K+
Sbjct: 271 VEETDYLRDKIYIPKVYKEISGKRVMVTEWADGIP---LYDQTALSE-------AGMSKK 320
Query: 285 NILKSLTLAYGQMILKSGFFHADPHPGNILICKGS----EVALLDYGQVKDLPDNLRLGY 340
IL +L + S H DPHPGNIL+ K + +LD+G + R +
Sbjct: 321 EILTNLFRFLAFQMFHSKQVHCDPHPGNILVRKNQAGLCQTVILDHGLYVFESEKFRKEF 380
Query: 341 ARLVLA 346
A L A
Sbjct: 381 ALLFTA 386
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 158/328 (48%), Gaps = 29/328 (8%)
Query: 74 DLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLV--VENELGRSVSEM 130
DLG F+K Q++ + DL P L+ L DR P P+D Q V +E++LG V E+
Sbjct: 65 DLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVP--PFDPKQAVALIESQLGAKVGEV 122
Query: 131 FETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQKTD 190
F FD +PL SAS+AQVH ARL+ ++VVVKV PG++ ++ D+ L A ++
Sbjct: 123 FSRFDVEPLASASVAQVHAARLKTG-EEVVVKVVRPGLKPVIAQDLAWLFLIAKGAERAS 181
Query: 191 I---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLLPDMVT 246
+ I + EK I E D REA ++R +N S ++ VP++ D+
Sbjct: 182 ADARRLHPVEIVGDYEKTIYDELDLLREAANASQLR----RNFEGSELMYVPQVYWDLCR 237
Query: 247 RKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHA 306
KVL+ME I G+P+ ++ +R T + + + + + + FFHA
Sbjct: 238 PKVLVMERIYGVPVTDMATLADQR----------TDMKLLAERGVEVFFTQVFRHSFFHA 287
Query: 307 DPHPGNILICK----GSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAESYREL 362
D HPGNI + + +D G V L + AR ++A D AE + +
Sbjct: 288 DMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAELHIDS 347
Query: 363 G-IETLSKCEDEQKEMFKLAQTMFDTKL 389
G + +K + + + + + +F+ L
Sbjct: 348 GWVPAHTKVNEFEAAIRTVCEPIFEKPL 375
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 130/251 (51%), Gaps = 24/251 (9%)
Query: 73 SDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQL--VVENELGRSVSE 129
DLG F+K Q++ + DL P L+ L DR P P+D+ Q ++E +LG+ +SE
Sbjct: 64 QDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVP--PFDSQQSMKLIEEQLGKKISE 121
Query: 130 MFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQKT 189
+F FD DPL SAS+AQVH A+L+ ++VVVKV PG++ ++ D+ L A ++
Sbjct: 122 VFSRFDVDPLASASVAQVHAAQLKTG-EEVVVKVIRPGLKPIIGQDLAWLFILARAAERF 180
Query: 190 DIKFDLF---SITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLLPDMV 245
L + + EK I E D REA +++ +N SP+L VP++ D
Sbjct: 181 SADARLLHPVDVVADYEKTIYDELDLLREAANASQLK----RNFEGSPLLYVPQVYWDWC 236
Query: 246 TRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFH 305
KVL+ME I G+ + +L +R K + + + + Q + + FFH
Sbjct: 237 RPKVLVMERIYGVQVTDLATLADQR---------TDMKMLAERGVEIFFTQ-VFRDSFFH 286
Query: 306 ADPHPGNILIC 316
AD HPGNI +
Sbjct: 287 ADMHPGNIFVS 297
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 144/296 (48%), Gaps = 24/296 (8%)
Query: 65 AEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENEL 123
+++ +LG F+K Q++ + DL P L L DR P P + + ++E L
Sbjct: 52 GDRLRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKSL 111
Query: 124 GRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFA 183
G VSE+F F DP+ SAS+AQVH A L + VVVKV PG+ ++ D+ + A
Sbjct: 112 GAPVSELFAEFSPDPMASASVAQVHAATL-PNGQKVVVKVLRPGIEKVIRQDLGLMYLMA 170
Query: 184 LYMQK---TDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPR 239
++K + + + + I E D REA ++R +N SP++ +P
Sbjct: 171 GLLEKYWSEGKRLHPVEVVADYDSTIHDELDLQREAANASQLR----RNFENSPLIYIPF 226
Query: 240 LLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMIL 299
+ D + VL+ME I GIPI ++ + K G+N ++ A K + + + Q +
Sbjct: 227 IDWDYTRKSVLVMERIHGIPIADV-PALEKAGVN--MRVLAE------KGVEIFFTQ-VF 276
Query: 300 KSGFFHADPHPGNILICKGS----EVALLDYGQVKDLPDNLRLGYARLVLAIADND 351
+ FFHAD HPGNI + + + +D+G V L + + AR +LA D
Sbjct: 277 RDSFFHADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRD 332
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 130/250 (52%), Gaps = 24/250 (9%)
Query: 74 DLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLV--VENELGRSVSEM 130
DLG F+K Q++ + DL P L+ L DR P P+D+ + V +E +LG+ +S++
Sbjct: 65 DLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVP--PFDSQKSVALIEAQLGKKISDV 122
Query: 131 FETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQKTD 190
F FD +PL SAS+AQVH A+L+ ++VVVKV PG++ ++ D+ L A +K
Sbjct: 123 FSRFDIEPLASASVAQVHAAKLKTG-EEVVVKVIRPGLKPIIAQDLAWLFILARAAEKLS 181
Query: 191 IKFDLF---SITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLLPDMVT 246
L + + EK I E D REA +++ +N SP+L VP++ D
Sbjct: 182 ADARLLHPVDVVSDYEKTIYDELDLLREAANASQLK----RNFEGSPLLYVPQVYWDWCR 237
Query: 247 RKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHA 306
KVL+ME I GI + +L +R K + + + + Q + + FFHA
Sbjct: 238 PKVLVMERIYGIQVTDLATLADQR---------TDMKMLAERGVEIFFTQ-VFRDSFFHA 287
Query: 307 DPHPGNILIC 316
D HPGNI +
Sbjct: 288 DMHPGNIFVS 297
>sp|Q491V8|UBIB_BLOPB Probable ubiquinone biosynthesis protein UbiB OS=Blochmannia
pennsylvanicus (strain BPEN) GN=ubiB PE=3 SV=1
Length = 546
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 167/351 (47%), Gaps = 31/351 (8%)
Query: 65 AEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTV--QLVVEN 121
E+ +LG ++K Q++ + D+ P + +L L DR P+D + ++ +E
Sbjct: 54 GERFRLALQELGPIWIKFGQMLSTRRDIFPDSVADQLSILQDRV--APFDGIIAKMCIER 111
Query: 122 ELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQA 181
+G S+ F+ F PL SASI+QVH ARL+ + D+V+K+ PG+ ++ DI +
Sbjct: 112 AIGNSLETWFKDFQEIPLASASISQVHSARLKKNNKDIVIKIIRPGLLPVIKIDICLMYR 171
Query: 182 FALYMQK---TDIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-V 237
A ++ K KF + E EK + E + +E ++R +N KS +L +
Sbjct: 172 LAKWICKFLPEGRKFKFSEVVSEYEKTLFNELNLLKETANTIQLR----RNFKKSQILYI 227
Query: 238 PRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQM 297
P++ D + V++ME I GIP+ NL +A + K+ A + + + + Q
Sbjct: 228 PKVYVDFCSENVMVMERIYGIPVYNL---VALKKQKTNMKLLAE------RGIEIFFTQ- 277
Query: 298 ILKSGFFHADPHPGNILICK----GSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPI 353
+ + FFH D HPGNI I + +D G V L + A +A ++D
Sbjct: 278 VFRDSFFHGDMHPGNIFISYKHPGNPKYISVDCGIVGSLNKKDKYYLAANFIAFFNHDYR 337
Query: 354 GAAESYRELG-IETLSKCEDEQKEMFKLAQTMFDT---KLPPGVVMLQPFS 400
AE + + G I + ED + M + + +F+ K+P ++L F+
Sbjct: 338 KIAELHLDSGWIPLDTNIEDFECAMRTVFEPIFEQPLEKIPFSKILLYLFN 388
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 158/354 (44%), Gaps = 28/354 (7%)
Query: 15 YHFRPWQRSFQFWVRAAEIYAGYKAFQVRVSFVKDVQKQDAMWEIQHELAAEKIYAMCSD 74
Y RPW+ W RA E+ + F + + + E AE + + +
Sbjct: 28 YRRRPWK---VLW-RALEVVWSFGFFLTCLLW----DQWTGQVEYYKRQRAEDLRELLTK 79
Query: 75 LGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGRSVSEMFET 133
LG F+KV Q + +PDL ++ L+ L D+ P D ++E +LG V E +
Sbjct: 80 LGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKVDEAYRE 139
Query: 134 FDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNL----QAFALYMQKT 189
P+ +AS+ QV+RA L ++V VKVQ P +R + D+ + Q F ++
Sbjct: 140 ISAHPVAAASLGQVYRAMLFS-GEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFGRFL-PL 197
Query: 190 DIKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLVPRLLPDMVTRKV 249
++ DL I E ++ E D+ E E+ F + + V VP + +KV
Sbjct: 198 NLGHDLTLIVDEFGIKLFEEIDYLNEGRNAEK---FAENFHGDAEVKVPCIYWQYSNQKV 254
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
L +E+I G + + D+I G++P I + + +L+ GFFHADPH
Sbjct: 255 LTLEWIQGFKLTD-TDKIRAAGLDPSDIIRIGVTSGL---------RQLLEHGFFHADPH 304
Query: 310 PGNILICKGSEVALLDYGQVKDLPDNLRLGYARLVLAIADNDPIGAAESYRELG 363
PGN+ +A +D+G + L + A ++ + + D + E + LG
Sbjct: 305 PGNLFATLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALG 358
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 126/250 (50%), Gaps = 24/250 (9%)
Query: 74 DLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLV--VENELGRSVSEM 130
DLG F+K Q++ + DL P L+ L DR P P+D V +E +LG V E+
Sbjct: 66 DLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVP--PFDPQHAVALIEEQLGAKVGEV 123
Query: 131 FETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQKTD 190
F FD +PL SAS+AQVH ARL+ ++VVVKV PG++ ++ D+ L A ++
Sbjct: 124 FSRFDVEPLASASVAQVHAARLKSG-EEVVVKVVRPGLKPVIAQDLAWLFLIAKAAERAS 182
Query: 191 I---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLLPDMVT 246
+ I + EK I E D REA ++R +N S ++ VP++ D+
Sbjct: 183 ADARRLHPVEIVGDYEKTIYDELDLLREAANASQLR----RNFEGSELMYVPQVYWDLCR 238
Query: 247 RKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHA 306
KVL+ME I G+P+ ++ +R T + + + + + + FFHA
Sbjct: 239 PKVLVMERIYGVPVTDMATLADQR----------TDMKMLAERGVEVFFTQVFRDSFFHA 288
Query: 307 DPHPGNILIC 316
D HPGNI +
Sbjct: 289 DMHPGNIFVS 298
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 129/260 (49%), Gaps = 42/260 (16%)
Query: 73 SDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLV--VENELGRSVSE 129
DLG F+K Q++ + DL P L+ L DR P P+D + V +E +LG V E
Sbjct: 65 QDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVP--PFDPQKAVALIEEQLGAKVGE 122
Query: 130 MFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQKT 189
+F FD +PL SAS+AQVH ARL+ ++VVVKV PG++ ++ D+ L A ++
Sbjct: 123 VFSRFDVEPLASASVAQVHAARLKTG-EEVVVKVVRPGLKPVIAQDLAWLFLIAKAAERA 181
Query: 190 DI---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLLPDMV 245
+ I + EK I E D REA ++R +N S ++ VP++ D+
Sbjct: 182 SADARRLHPVEIVGDYEKTIYDELDLLREAANASQLR----RNFEGSELMYVPQVYWDLC 237
Query: 246 TRKVLLMEYIDGIPI---LNLGDE------IAKRGINPGGKIAATAKQNILKSLTLAYGQ 296
KVL+ME I G+P+ + L D+ +A+RG+ +
Sbjct: 238 RPKVLVMERIYGVPVTDMVTLADQRTDMKLLAERGVE-------------------VFFT 278
Query: 297 MILKSGFFHADPHPGNILIC 316
+ + FFHAD HPGNI +
Sbjct: 279 QVFRDSFFHADMHPGNIFVS 298
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 127/250 (50%), Gaps = 24/250 (9%)
Query: 74 DLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLV--VENELGRSVSEM 130
DLG F+K Q++ + DL P L+ L DR P P+D + V +E +LG V E+
Sbjct: 66 DLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVP--PFDPKKAVALIEEQLGAKVGEV 123
Query: 131 FETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQKTD 190
F FD +PL SAS+AQVH ARL+ ++VVVKV PG++ ++ D+ L A ++
Sbjct: 124 FSRFDVEPLASASVAQVHAARLKTG-EEVVVKVVRPGLKPVIAQDLAWLFLIAKAAERAS 182
Query: 191 I---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLLPDMVT 246
+ I + EK I E D REA ++R +N S ++ VP++ D+
Sbjct: 183 ADARRLHPVEIVGDYEKTIYDELDLLREAANASQLR----RNFEDSELMYVPQVYWDLCR 238
Query: 247 RKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHA 306
KVL+ME I G+P+ ++ +R T + + + + + + FFHA
Sbjct: 239 PKVLVMERIYGVPVTDMATLADQR----------TDMKLLAERGVEVFFTQVFRDSFFHA 288
Query: 307 DPHPGNILIC 316
D HPGNI +
Sbjct: 289 DMHPGNIFVS 298
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 164/351 (46%), Gaps = 28/351 (7%)
Query: 65 AEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENEL 123
+++ LG F+K QV+ + DL P L L DR P P +E
Sbjct: 50 GQRLREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAF 109
Query: 124 GRSVSEMFETFDRDPLGSASIAQVHRARLRGDKD---DVVVKVQHPGVRDLMMTDIRNLQ 180
R V ++F FD P+ SASIAQVH A +R D+ +V VKV P +R ++ D+ +
Sbjct: 110 RRPVGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALMA 169
Query: 181 AFALYMQKTDI---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLV 237
A +++K + + E +K + E D REA ++R + + VL+
Sbjct: 170 MMAGWVEKLSPDGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNM---ASLELVLI 226
Query: 238 PRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQM 297
P + D +V++ME ++G+PI L D + G++ I A+ + T+ + Q
Sbjct: 227 PEMFWDFCHPEVIVMERMNGVPIAQL-DRLRAAGVD----IPKLARDGV----TIFFTQ- 276
Query: 298 ILKSGFFHADPHPGNILICKGSEV----ALLDYGQVKDLPDNLRLGYARLVLAIADNDPI 353
+ + GFFHAD HPGNI + E LD+G + L ++ + A+ +A D
Sbjct: 277 VFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFRRDYK 336
Query: 354 GAAESYRELG-IETLSKCEDEQKEMFKLAQTMFDTKLPP---GVVMLQPFS 400
AE + E G + ++ ++ + + + + FD L G+V+++ F
Sbjct: 337 RVAELHLESGWVPEGTRIDELEGAIRTVCEPYFDRPLKEISLGMVLMRLFQ 387
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 121/247 (48%), Gaps = 19/247 (7%)
Query: 75 LGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGRSVSEMFET 133
LG F+K Q++ + DL P L L DR P + +E LG ++ +F+
Sbjct: 64 LGPIFIKFGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQAARRQIEASLGCTIETLFDD 123
Query: 134 FDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQK---TD 190
FD PL SASIAQVH ARL+ + ++V+KV P + ++ D+R +QA A + +
Sbjct: 124 FDETPLASASIAQVHTARLKENGREIVIKVIRPDIEPVIEADLRLMQALARLVARFVPQS 183
Query: 191 IKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLLPDMVTRKV 249
+ + +E K I E + REA ++R +N T S L VP + + +V
Sbjct: 184 GRLRPIEVVEEYRKTILDELNLMREAANAIQLR----RNFTGSEALYVPEVFTEHCREQV 239
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
L+ME I GIP+ +IA N G + A++ + T + + FFHAD H
Sbjct: 240 LVMERIYGIPV----SDIAALEAN-GTNMKLLAERGVEVFFT-----QVFRDSFFHADMH 289
Query: 310 PGNILIC 316
PGNI +
Sbjct: 290 PGNIFVS 296
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 116/247 (46%), Gaps = 19/247 (7%)
Query: 75 LGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENELGRSVSEMFET 133
LG F+K Q++ + DL P L L DR P +L +E LG V +F+
Sbjct: 64 LGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVPPFCGQAARLKIEESLGCPVETLFDD 123
Query: 134 FDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDIRNLQAFALYMQK---TD 190
FD PL SASIAQVH RL+ + ++V+KV P + ++ D+R +Q A + +
Sbjct: 124 FDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTLARLVARFVPQS 183
Query: 191 IKFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVL-VPRLLPDMVTRKV 249
+ + +E K I E + REA ++R +N T S L VP + + V
Sbjct: 184 ARLRPIEVVEEYRKTILDELNLMREAANAIQLR----RNFTGSDALYVPEVFTEHCREHV 239
Query: 250 LLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQMILKSGFFHADPH 309
L+ME I GIP+ ++ P + T + + + + + + FFHAD H
Sbjct: 240 LVMERIYGIPVSDI----------PALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMH 289
Query: 310 PGNILIC 316
PGNI +
Sbjct: 290 PGNIFVS 296
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 160/351 (45%), Gaps = 28/351 (7%)
Query: 65 AEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQLVVENEL 123
+++ LG F+K QV+ + DL P L L DR P D +E
Sbjct: 50 GQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAF 109
Query: 124 GRSVSEMFETFDRDPLGSASIAQVHRARLR---GDKDDVVVKVQHPGVRDLMMTDIRNLQ 180
R + E+F +FDR P+ SASIAQVH A +R G +V VKV PG+ ++ D+ ++
Sbjct: 110 RRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMR 169
Query: 181 AFALYMQKTDI---KFDLFSITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKSPVLV 237
A +++ + + E + + E D REA ++R + + VL+
Sbjct: 170 MMAGWVESLSADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDL---VLI 226
Query: 238 PRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLAYGQM 297
P + D +VL+ME + G+PI N D + G++ I A+ + T+ + Q
Sbjct: 227 PEVFWDFCHAEVLVMERMKGVPI-NQVDRLRSAGVD----IPKLARDGV----TIFFTQ- 276
Query: 298 ILKSGFFHADPHPGNILICKGSEV----ALLDYGQVKDLPDNLRLGYARLVLAIADNDPI 353
+ + GFFHAD HPGNI + E LD+G V L + + A+ A D
Sbjct: 277 VFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYK 336
Query: 354 GAAESYRELG-IETLSKCEDEQKEMFKLAQTMFDTKLPP---GVVMLQPFS 400
AE + E G + ++ + + + + + FD L G+V+L+ F
Sbjct: 337 RVAELHIESGWVPAHTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQ 387
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 141/316 (44%), Gaps = 24/316 (7%)
Query: 58 EIQHELAAEKIYAMCSDLGGFFLKVAQVVG-KPDLAPAAWVRRLVTLCDRAPATPYDTVQ 116
EI + ++ +LG F+K Q++ + DL P LV L DR T +
Sbjct: 45 EIVEQSRGRRLRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTAR 104
Query: 117 LVVENELGRSVSEMFETFDRDPLGSASIAQVHRARLRGDKDDVVVKVQHPGVRDLMMTDI 176
+++E LG+SV F FD PL SASI+QVH A L D+ +VVVKV P + + DI
Sbjct: 105 IIIETALGKSVESAFAHFDTVPLASASISQVHAATLH-DRREVVVKVLRPDIEHQISDDI 163
Query: 177 RNLQAFALYMQKTDIKFDLF---SITKEMEKQIGFEFDFAREADAMERIRHFLYKNNTKS 233
L++ A ++ T D I E+E + E D RE +R F ++
Sbjct: 164 ALLKSLATLVEHTHPNADKIRPREIVAEIETTLAAELDLQREGANASVLRRFWEASDD-- 221
Query: 234 PVLVPRLLPDMVTRKVLLMEYIDGIPILNLGDEIAKRGINPGGKIAATAKQNILKSLTLA 293
+ VP ++ +VL +E + GIP D+IA + + A ++ K + +
Sbjct: 222 -IYVPEVIWSHTAERVLTLERMYGIP----SDDIALLDASGIDRKALSS-----KGIRVF 271
Query: 294 YGQMILKSGFFHADPHPGNILI------CKGSEVALLDYGQVKDLPDNLRLGYARLVLAI 347
Y Q + + FFHAD H GNI + LD+G + L + A +AI
Sbjct: 272 YTQ-VFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAI 330
Query: 348 ADNDPIGAAESYRELG 363
D AE + E G
Sbjct: 331 FHKDYRRIAELHVEAG 346
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,881,872
Number of Sequences: 539616
Number of extensions: 6928487
Number of successful extensions: 18556
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 17920
Number of HSP's gapped (non-prelim): 270
length of query: 466
length of database: 191,569,459
effective HSP length: 121
effective length of query: 345
effective length of database: 126,275,923
effective search space: 43565193435
effective search space used: 43565193435
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)