BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045842
(765 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 68 AFPEIHIGQYPLDMGR 83
AFPEIH+ QYPLDMGR
Sbjct: 187 AFPEIHVAQYPLDMGR 202
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 36/114 (31%)
Query: 48 PYLKRQGFVPR---KIEDF----GDGGAFPEIHIGQYP------LDMGRNK--------- 85
PY+ +G P K+ED G + +IH+G L++ RN+
Sbjct: 128 PYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSY 187
Query: 86 --------SGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLIPKF 131
+GK G+ ++PV+V G D +VK++E K++ +S+ +PK
Sbjct: 188 TRSKAAWEAGKFGNEVIPVTVTVKGQ--PDVVVKEDEEYKRVDFSK----VPKL 235
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 36/114 (31%)
Query: 48 PYLKRQGFVPR---KIEDF----GDGGAFPEIHIGQYP------LDMGRNK--------- 85
PY+ +G P K+ED G + +IH+G L++ RN+
Sbjct: 128 PYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSY 187
Query: 86 --------SGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLIPKF 131
+GK G+ ++PV+V G D +VK++E K++ +S+ +PK
Sbjct: 188 TRSKAAWEAGKFGNEVIPVTVTVKGQ--PDVVVKEDEEYKRVDFSK----VPKL 235
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 36/114 (31%)
Query: 48 PYLKRQGFVPR---KIEDF----GDGGAFPEIHIGQYP------LDMGRNK--------- 85
PY+ +G P K+ED G + +IH+G L++ RN+
Sbjct: 139 PYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSY 198
Query: 86 --------SGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLIPKF 131
+GK G+ ++PV+V G D +VK++E K++ +S+ +PK
Sbjct: 199 TRSKAAWEAGKFGNEVIPVTVTVKGQ--PDVVVKEDEEYKRVDFSK----VPKL 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,897,428
Number of Sequences: 62578
Number of extensions: 791320
Number of successful extensions: 1675
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1672
Number of HSP's gapped (non-prelim): 6
length of query: 765
length of database: 14,973,337
effective HSP length: 106
effective length of query: 659
effective length of database: 8,340,069
effective search space: 5496105471
effective search space used: 5496105471
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)