Query 045842
Match_columns 765
No_of_seqs 177 out of 215
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 06:03:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2441 mRNA splicing factor/p 100.0 5E-178 1E-182 1392.7 35.2 503 1-567 1-505 (506)
2 PF02731 SKIP_SNW: SKIP/SNW do 100.0 1.1E-73 2.3E-78 547.8 16.0 157 184-343 2-158 (158)
3 PTZ00266 NIMA-related protein 93.1 0.44 9.6E-06 58.9 10.2 18 425-442 529-546 (1021)
4 PTZ00266 NIMA-related protein 91.2 1.9 4.2E-05 53.6 12.5 6 60-65 183-188 (1021)
5 KOG1029 Endocytic adaptor prot 90.3 0.76 1.7E-05 55.3 7.7 17 51-67 98-114 (1118)
6 KOG1029 Endocytic adaptor prot 88.9 3.8 8.1E-05 49.8 11.8 15 597-611 693-707 (1118)
7 PF07946 DUF1682: Protein of u 79.5 4.6 0.0001 43.8 6.7 23 295-319 237-259 (321)
8 PF09726 Macoilin: Transmembra 73.1 20 0.00044 43.3 10.2 35 298-332 489-523 (697)
9 KOG4364 Chromatin assembly fac 72.6 10 0.00023 45.5 7.5 40 305-344 261-300 (811)
10 PF15236 CCDC66: Coiled-coil d 67.7 89 0.0019 31.8 11.8 42 301-342 48-89 (157)
11 KOG1144 Translation initiation 67.0 18 0.0004 44.4 8.0 17 321-337 230-246 (1064)
12 PF06936 Selenoprotein_S: Sele 60.9 27 0.00059 36.1 7.0 30 290-319 76-105 (190)
13 KOG4661 Hsp27-ERE-TATA-binding 59.9 33 0.00072 40.9 8.2 12 429-440 689-700 (940)
14 KOG4661 Hsp27-ERE-TATA-binding 50.1 1.5E+02 0.0034 35.8 11.4 13 203-215 474-486 (940)
15 KOG1144 Translation initiation 48.0 2E+02 0.0043 36.2 12.1 23 424-446 327-349 (1064)
16 KOG2002 TPR-containing nuclear 45.0 1.8E+02 0.0039 36.9 11.4 17 392-408 863-879 (1018)
17 PRK06231 F0F1 ATP synthase sub 43.1 4E+02 0.0087 27.6 12.7 40 288-327 77-116 (205)
18 KOG4339 RPEL repeat-containing 41.5 21 0.00046 41.9 3.0 36 303-338 422-457 (533)
19 KOG2441 mRNA splicing factor/p 39.6 3.9E+02 0.0084 31.3 12.1 33 200-232 169-201 (506)
20 PRK10234 DNA-binding transcrip 38.5 22 0.00047 34.4 2.1 77 78-165 39-115 (118)
21 KOG2072 Translation initiation 38.3 2.5E+02 0.0054 35.4 11.0 9 121-129 552-560 (988)
22 KOG2412 Nuclear-export-signal 38.1 3.5E+02 0.0075 32.7 11.8 27 142-168 84-110 (591)
23 KOG0163 Myosin class VI heavy 37.1 2.4E+02 0.0053 35.4 10.6 22 623-644 1176-1197(1259)
24 PF09731 Mitofilin: Mitochondr 36.8 2.4E+02 0.0052 32.9 10.5 15 253-267 230-244 (582)
25 PLN03086 PRLI-interacting fact 36.5 67 0.0014 38.4 6.0 58 321-425 7-64 (567)
26 PF07946 DUF1682: Protein of u 36.1 1.4E+02 0.0029 32.8 7.9 11 205-215 194-204 (321)
27 PTZ00121 MAEBL; Provisional 32.0 2.1E+02 0.0046 38.1 9.4 7 297-303 1137-1143(2084)
28 CHL00118 atpG ATP synthase CF0 31.5 5.1E+02 0.011 25.4 12.5 35 290-324 53-87 (156)
29 KOG2357 Uncharacterized conser 29.5 1.9E+02 0.004 33.7 7.8 53 290-342 370-425 (440)
30 PF03154 Atrophin-1: Atrophin- 29.1 32 0.0007 43.0 2.0 18 232-249 526-543 (982)
31 PF11600 CAF-1_p150: Chromatin 28.6 6.6E+02 0.014 26.0 11.1 6 481-486 206-211 (216)
32 KOG4364 Chromatin assembly fac 28.2 4.4E+02 0.0096 32.6 10.7 42 394-437 326-367 (811)
33 PF05262 Borrelia_P83: Borreli 28.1 1.1E+03 0.024 28.1 13.7 75 252-326 140-228 (489)
34 PF15402 Spc7_N: N-terminus of 27.9 64 0.0014 40.5 4.2 40 387-435 141-180 (927)
35 KOG1363 Predicted regulator of 27.1 3.1E+02 0.0066 32.2 9.1 75 263-337 251-328 (460)
36 PRK14474 F0F1 ATP synthase sub 24.0 9E+02 0.02 25.8 12.6 35 290-324 36-70 (250)
37 PF12999 PRKCSH-like: Glucosid 23.2 4.5E+02 0.0097 27.4 8.5 50 290-340 121-170 (176)
38 PRK13453 F0F1 ATP synthase sub 22.9 7.7E+02 0.017 24.6 12.7 29 294-322 53-81 (173)
39 PF06923 GutM: Glucitol operon 22.7 22 0.00047 33.6 -0.8 45 79-128 39-83 (109)
40 PF01237 Oxysterol_BP: Oxyster 22.0 1.6E+02 0.0034 32.4 5.4 73 246-342 240-322 (354)
41 KOG3910 Helix loop helix trans 21.9 36 0.00078 40.0 0.6 32 399-438 514-545 (632)
42 KOG1114 Tripeptidyl peptidase 21.7 1.1E+02 0.0023 39.0 4.3 26 613-639 573-598 (1304)
43 PRK00247 putative inner membra 21.5 4.7E+02 0.01 30.5 9.2 16 401-416 351-366 (429)
44 COG3961 Pyruvate decarboxylase 21.3 36 0.00079 40.2 0.5 59 244-307 442-504 (557)
45 KOG3654 Uncharacterized CH dom 20.7 7.1E+02 0.015 30.2 10.3 24 315-338 408-431 (708)
46 PRK08475 F0F1 ATP synthase sub 20.7 8.5E+02 0.018 24.3 12.5 33 290-322 53-85 (167)
47 KOG2963 RNA-binding protein re 20.0 2.7E+02 0.0058 32.0 6.6 22 311-332 323-344 (405)
No 1
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=100.00 E-value=5.1e-178 Score=1392.67 Aligned_cols=503 Identities=59% Similarity=0.957 Sum_probs=466.7
Q ss_pred CCccccCCCCccCCcccccccchhhhhhccCcchhccccccccCCCCCccccCCCccCCcccCCCCCCCCccccccCCCc
Q 045842 1 MSLKEILPPVKSNHASFYDHSNDMWFKNLYNSSEKEKSLEAKRKPVPPYLKRQGFVPRKIEDFGDGGAFPEIHIGQYPLD 80 (765)
Q Consensus 1 ~sl~~~LPaP~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~PpYg~R~gw~Pr~~eDFgDGGAFPEIhvAQYPL~ 80 (765)
|.|.+.||+|++..+.++|++++ ..+.+++ ++..++ +.+||||+|+||+||.+|||||||||||||||||||+
T Consensus 1 m~l~~~~pap~~~~~~~~~~~~d---~~r~~~~--~~~~~s--~~~ppyg~Rkg~~pr~pEDFGDGGAFPEihvaqyPl~ 73 (506)
T KOG2441|consen 1 MKLLSDLPAPKSTTTDYYDHEED---KNRVTES--ETVLVS--SEPPPYGYRKGWRPRLPEDFGDGGAFPEIHVAQYPLD 73 (506)
T ss_pred CcccccCCCCCCCCchHHHHhhh---hccccch--hhhhhc--CCCCccccccCcccCChhhccCCCccchhhhhcCCcc
Confidence 78999999999999999988876 2333333 233333 4899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcceEEeCCCCCcchHHHHhhccCCCceeecccCCcccccccCCCcccccCcCCHHHHHHHHHHHHHHH
Q 045842 81 MGRNKSGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLIPKFLRNDEEEEETDEEMQREIDETTQETKACL 160 (765)
Q Consensus 81 MG~k~~~~~~sn~lalqvD~~GkV~YDaIarqG~~~~kiV~Ss~~DlIPlr~r~~~~~~~l~rPseEei~etterTK~AL 160 (765)
||++++ .+|+|+||||.+|+|.||+||||||++++||||+|.||||+++.+ +.+.++++|++++|+|||++||.||
T Consensus 74 mg~~k~---~s~aLa~qv~seg~i~~DaIarqg~~~~kvvysk~~DliPk~~~n-~~d~d~~~p~~~~iqE~tekTk~al 149 (506)
T KOG2441|consen 74 MGRQKK---VSNALALQVDSEGAILYDAIARQGHSKDKVVYSKLDDLIPKRQSN-EDDSDLQKPDDEEIQECTEKTKSAL 149 (506)
T ss_pred ccccCc---cccccceeeccccchhhHHHHhccccccceeeehhhhhcchhhhc-cCCccccCCcHHHHHHHHHHHHHHH
Confidence 999765 899999999999999999999999999999999999999999986 4556899999999999999999999
Q ss_pred HHHHhhhhhccCCCCcCCCCCCCceEEeccCCccccccCCCcceEEEeeeccCCCCCCCcccc-cCCCCCCCCCCCCccc
Q 045842 161 EKVVNVKLSAAQPKNVPQQSSDSKYIKYKPSQQSVAFNSGAKERVIRMMEMPVDPLEPPKFKH-KRVPRASGSPPVPVMH 239 (765)
Q Consensus 161 Ekll~~Ki~aa~pk~~~~~~~~~~yIrYTPsqq~~~fnsg~~qRIIkmvE~q~DPLePPkFK~-KKipr~ppSPP~PVLH 239 (765)
|||||.|+++++|.+++.+.++++||||||+||++ |+|++||||+||++|+|||+||+||| ||||++|||||+||||
T Consensus 150 eKiVn~klA~a~P~~~a~q~a~s~YIrytpsqq~~--~sg~kqriIrmVe~q~DPmePpkfk~nkkiprappsppvPVmH 227 (506)
T KOG2441|consen 150 EKIVNAKLAAAQPSRIADQRADSQYIRYTPSQQAG--NSGSKQRIIRMVEMQKDPMEPPKFKINKKIPRAPPSPPVPVMH 227 (506)
T ss_pred HHHHHHHHhhccchhhhhccCCcceeeecccchhh--hhcchhhhhhhhhcccCCCCCcccccccccCCCCCCCCCCccc
Confidence 99999999999999999999999999999999987 79999999999999999999999997 9999999999999999
Q ss_pred CCCCCCCccccccccCCCccccCCCCCCcccccchhhhhcCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 240 SPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKE 319 (765)
Q Consensus 240 SPpRKlTkeEQq~WkIPPcISNWKNpKGYTIpLDKRLAADGRgLq~v~INDkFA~LSEALyiADrkAREEV~~Rae~qk~ 319 (765)
|||||+|++||++||||||||||||||||||||||||||||||||+||||||||+||||||+||++|||||++|++|+++
T Consensus 228 sp~rk~t~kdqqdWKIPp~ISNWKNpkGYTipLdkRlaadgrglq~v~INdnFaKlseALy~adrKAReeV~~ra~~~r~ 307 (506)
T KOG2441|consen 228 SPSRKMTAKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVHINDNFAKLSEALYIADRKAREEVRMRAQLERK 307 (506)
T ss_pred CCCccccccccccccCCchhhcCcCCCCceecchhhhhhccCCcccceecccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccccccchhhhhhhhhhccCCCccchHHHHHHHHHHHH
Q 045842 320 MLMKEKERKEQELRALAQKARSERTGAAPPASVPIPSEKSAMDTSDMREDYEHERERRRERDMPKETREEREERLQREKL 399 (765)
Q Consensus 320 la~KEKe~KEEkLR~LAqkAReER~g~~~~~~~~~~~~~~~~~~~~~~~~y~~d~~~~~~~~~~~~~~e~~e~~reRe~i 399 (765)
+++|||++||++||+||||||++|+|...+ ..++++.+++.|++|
T Consensus 308 ma~kek~~kE~kL~elAQkAR~~r~g~~~~-----------------------------------~~~ked~e~~~R~ei 352 (506)
T KOG2441|consen 308 MAEKEKEEKEQKLRELAQKAREERGGPQTG-----------------------------------AIEKEDREARTREEI 352 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccc-----------------------------------ccccchhHHHHHHHH
Confidence 999999999999999999999999986542 123345667779999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchhhhhhccCCCchhhhhcCCCcCCCCCCCcccchhhhhccccCCCCCCCCCcccccc
Q 045842 400 RAERRRERERERRLEAKDAAMGKKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVY 479 (765)
Q Consensus 400 R~ERrRErERE~Rlsr~g~~e~K~~klaReq~RDISEKIALG~Ak~t~~~s~E~~yDsRLFNQs~G~dSGFgdDD~YNVY 479 (765)
|++|++|+|+++++++|++ +|++||+|+++||||||||||+|+++ .++|+|||||||||++||+|||++||+||||
T Consensus 353 R~~Rrke~~~~~nlsra~~--dKrsKl~r~r~RDiSEkIaLG~~~~~--~~~e~qyDqRlFnq~~g~dSg~~~dd~ynvY 428 (506)
T KOG2441|consen 353 RRDRRKEREKDRNLSRAAP--DKRSKLQRDRGRDISEKIALGLAKPS--ESGEVQYDQRLFNQGKGLDSGFADDDEYNVY 428 (506)
T ss_pred HHHHHHHHHHhhhhhhhcc--chhhhhhhccCcchHhhhhhccCCCC--CCCcchhhHHhhhcccCcccccccccccccc
Confidence 9999999999999999997 79999999999999999999999998 8999999999999999999999999999999
Q ss_pred CccccCCCccccccccCCCCCCccccCCCchHHHHHHhhc-CcCCCCCCCCCCCCCCCCCCCCeeeecccccCCCchhhh
Q 045842 480 DKGLFTAQPTLSTLYRPKKDADDDMYGGNADEQMEKIMKT-DRFKPDKGFAGSSERSGPRDRPVEFEKEAEEADPFGLDE 558 (765)
Q Consensus 480 DKPLF~~q~a~~sIYRP~~~~d~d~~gg~~~e~iek~~kt-~RF~~~kgF~Gad~~~~~R~gPVqFEKd~~~~DPFGld~ 558 (765)
|+|||++++ +++||||+++.++++||. .+++.++++ .||+++|+|+|+|..+++ +||||||| ||||||
T Consensus 429 D~~wr~~q~-~~siYrp~k~ld~e~yg~---~el~~~i~~~~rf~~dk~f~gsd~~~~~-~gPV~FEk-----Dpfg~~- 497 (506)
T KOG2441|consen 429 DKPWRGAQD-ISSIYRPSKNLDDEVYGV---DELESIIKGPNRFVADKSFSGSDERVRS-DGPVQFEK-----DPFGLD- 497 (506)
T ss_pred ccccccCCc-hhhhhCCCccchhhhhcc---hhhhhhccCccccccccccccccccccC-CCCceecc-----CCcccc-
Confidence 999999999 799999999999999964 356666654 999999999999985555 99999996 799999
Q ss_pred hhHHHHhcC
Q 045842 559 FLTEVKKGG 567 (765)
Q Consensus 559 fL~eaKk~~ 567 (765)
|+++|+++
T Consensus 498 -l~~~~~~~ 505 (506)
T KOG2441|consen 498 -LSDLKKHK 505 (506)
T ss_pred -hHhhhhcC
Confidence 99999874
No 2
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=100.00 E-value=1.1e-73 Score=547.77 Aligned_cols=157 Identities=73% Similarity=1.184 Sum_probs=154.4
Q ss_pred ceEEeccCCccccccCCCcceEEEeeeccCCCCCCCcccccCCCCCCCCCCCCcccCCCCCCCccccccccCCCccccCC
Q 045842 184 KYIKYKPSQQSVAFNSGAKERVIRMMEMPVDPLEPPKFKHKRVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWK 263 (765)
Q Consensus 184 ~yIrYTPsqq~~~fnsg~~qRIIkmvE~q~DPLePPkFK~KKipr~ppSPP~PVLHSPpRKlTkeEQq~WkIPPcISNWK 263 (765)
+||+|||+++++++| ++|||+||++++|||+||+|||||+|++++|||+||||||+||||+|||++|+|||||||||
T Consensus 2 ~yi~ytp~~~~~~~~---~~RiIk~ve~~~DPl~PpkfK~kkv~~~~~spp~PVlhsp~rKlT~eeq~~WkIPp~ISNWK 78 (158)
T PF02731_consen 2 QYIKYTPSQQGGAFN---KQRIIKMVEKQQDPLEPPKFKHKKVPRGPPSPPAPVLHSPPRKLTKEEQQKWKIPPCISNWK 78 (158)
T ss_pred CceeecCCCcCCCcC---CeeEEEEEecCCCCCCcchhhcccCCCCCCCCCCccccCCcccCCHHHHhcccCCCcccccc
Confidence 799999999988766 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccchhhhhcCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045842 264 NPKGYTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKEKERKEQELRALAQKARSER 343 (765)
Q Consensus 264 NpKGYTIpLDKRLAADGRgLq~v~INDkFA~LSEALyiADrkAREEV~~Rae~qk~la~KEKe~KEEkLR~LAqkAReER 343 (765)
||+|||||||||||||||||++++||||||+||||||+||++|||||++|++|+++++++|+++|||+||+||++||+||
T Consensus 79 N~kGytIpLDKRlaadgr~l~~~~INd~Fa~LseAL~~Ad~~aReev~~R~~~~~~~a~ke~~~kEe~lr~lA~~aR~eR 158 (158)
T PF02731_consen 79 NPKGYTIPLDKRLAADGRGLQDVEINDKFAKLSEALYIADRKAREEVRQRAEMQKELAEKEKEEKEEKLRELAQRAREER 158 (158)
T ss_pred CCCCCccCHHHHHhhcccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=93.12 E-value=0.44 Score=58.93 Aligned_cols=18 Identities=0% Similarity=-0.405 Sum_probs=9.7
Q ss_pred hhhhccCCCchhhhhcCC
Q 045842 425 KITRDRDRDISEKFALGM 442 (765)
Q Consensus 425 klaReq~RDISEKIALG~ 442 (765)
++...++.||.--+-.|.
T Consensus 529 ~~~~~~~~~~~~~~~~~~ 546 (1021)
T PTZ00266 529 FLKGMENGLSAGGGPGDG 546 (1021)
T ss_pred hhhhcccccccccccCCC
Confidence 455566777765433333
No 4
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.20 E-value=1.9 Score=53.57 Aligned_cols=6 Identities=67% Similarity=0.971 Sum_probs=3.3
Q ss_pred cccCCC
Q 045842 60 IEDFGD 65 (765)
Q Consensus 60 ~eDFgD 65 (765)
+-|||-
T Consensus 183 LsDFGl 188 (1021)
T PTZ00266 183 IGDFGL 188 (1021)
T ss_pred EccCCc
Confidence 456664
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.34 E-value=0.76 Score=55.27 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=13.7
Q ss_pred ccCCCccCCcccCCCCC
Q 045842 51 KRQGFVPRKIEDFGDGG 67 (765)
Q Consensus 51 ~R~gw~Pr~~eDFgDGG 67 (765)
+=.+.+|.+.--||-|+
T Consensus 98 ~~~~~~p~~~p~fg~Gs 114 (1118)
T KOG1029|consen 98 QPPRNAPSTWPGFGMGS 114 (1118)
T ss_pred cCCcCCCCCCCccCCCC
Confidence 33678999999999986
No 6
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.93 E-value=3.8 Score=49.78 Aligned_cols=15 Identities=33% Similarity=0.208 Sum_probs=10.5
Q ss_pred ceeeeeeeeeeccce
Q 045842 597 FEFIKAVLSFEAFSL 611 (765)
Q Consensus 597 ~~~~~~~~~~~~~~~ 611 (765)
+-...|+.-|||-|-
T Consensus 693 ~vkyrAly~FeaRs~ 707 (1118)
T KOG1029|consen 693 TVKYRALYPFEARSH 707 (1118)
T ss_pred eEEEeeecccccCCc
Confidence 445678888988653
No 7
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=79.47 E-value=4.6 Score=43.81 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 295 LSEALYVAEQKAREAVAMRSKVQKE 319 (765)
Q Consensus 295 LSEALyiADrkAREEV~~Rae~qk~ 319 (765)
|.-+|+++|.-+ .++++.++.++
T Consensus 237 ~~~v~~l~D~~~--~~~l~~e~~~K 259 (321)
T PF07946_consen 237 LKLVFYLIDKLA--RFKLSPEAKKK 259 (321)
T ss_pred HHHHHHHHHHhh--eeeeCHHHHHH
Confidence 344577777766 44445544443
No 8
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.14 E-value=20 Score=43.27 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 298 ALYVAEQKAREAVAMRSKVQKEMLMKEKERKEQEL 332 (765)
Q Consensus 298 ALyiADrkAREEV~~Rae~qk~la~KEKe~KEEkL 332 (765)
+|..+||+.++|-++|+.++++|.+..|.+++|+-
T Consensus 489 ~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~ 523 (697)
T PF09726_consen 489 SLQQLEKRLAEERRQRASLEKQLQEERKARKEEEE 523 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46778999999999999999999988888877653
No 9
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=72.64 E-value=10 Score=45.49 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045842 305 KAREAVAMRSKVQKEMLMKEKERKEQELRALAQKARSERT 344 (765)
Q Consensus 305 kAREEV~~Rae~qk~la~KEKe~KEEkLR~LAqkAReER~ 344 (765)
++|++-++.-...++|.++++++.++.+.+-+.++++|+-
T Consensus 261 K~R~erEr~~leeKrlk~~~~~eek~~~keE~~kekee~K 300 (811)
T KOG4364|consen 261 KERKERERQVLEEKRLKEKEQKEEKKAIKEENNKEKEETK 300 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555545556666677777777777777777777654
No 10
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=67.69 E-value=89 Score=31.75 Aligned_cols=42 Identities=14% Similarity=0.325 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 301 VAEQKAREAVAMRSKVQKEMLMKEKERKEQELRALAQKARSE 342 (765)
Q Consensus 301 iADrkAREEV~~Rae~qk~la~KEKe~KEEkLR~LAqkAReE 342 (765)
-=|++-+.+++..+-+.+++.+|+..+++|+-|.+-....+|
T Consensus 48 Ere~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE 89 (157)
T PF15236_consen 48 ERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEE 89 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456677778888999999999999888888877766555554
No 11
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=66.99 E-value=18 Score=44.38 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045842 321 LMKEKERKEQELRALAQ 337 (765)
Q Consensus 321 a~KEKe~KEEkLR~LAq 337 (765)
.++++.++||+||..++
T Consensus 230 eE~qkreeEE~~r~eeE 246 (1064)
T KOG1144|consen 230 EERQKREEEERLRREEE 246 (1064)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555443
No 12
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=60.90 E-value=27 Score=36.11 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 290 DNFAKLSEALYVAEQKAREAVAMRSKVQKE 319 (765)
Q Consensus 290 DkFA~LSEALyiADrkAREEV~~Rae~qk~ 319 (765)
|.+.+..||+..|.++..||....++..++
T Consensus 76 d~v~~rqEa~eaAR~RmQEE~dakA~~~kE 105 (190)
T PF06936_consen 76 DVVVRRQEAMEAARRRMQEELDAKAEEYKE 105 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999998876543
No 13
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=59.91 E-value=33 Score=40.95 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=7.0
Q ss_pred ccCCCchhhhhc
Q 045842 429 DRDRDISEKFAL 440 (765)
Q Consensus 429 eq~RDISEKIAL 440 (765)
+|.|=++|+--|
T Consensus 689 eqeRihreReel 700 (940)
T KOG4661|consen 689 EQERIHREREEL 700 (940)
T ss_pred hhhhhhhhHHHH
Confidence 455666666555
No 14
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=50.12 E-value=1.5e+02 Score=35.77 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=6.7
Q ss_pred ceEEEeeeccCCC
Q 045842 203 ERVIRMMEMPVDP 215 (765)
Q Consensus 203 qRIIkmvE~q~DP 215 (765)
.|||-|.-....|
T Consensus 474 GrmISVEkaKNEp 486 (940)
T KOG4661|consen 474 GRMISVEKAKNEP 486 (940)
T ss_pred ceeeeeeecccCc
Confidence 4666555444444
No 15
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=47.96 E-value=2e+02 Score=36.16 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=17.8
Q ss_pred hhhhhccCCCchhhhhcCCCcCC
Q 045842 424 SKITRDRDRDISEKFALGMASTG 446 (765)
Q Consensus 424 ~klaReq~RDISEKIALG~Ak~t 446 (765)
++.+|.+.-|++.-..||...++
T Consensus 327 Kk~~rq~~~~~~s~~~~~~~~~~ 349 (1064)
T KOG1144|consen 327 KKKARQKGNDRTSVEKLGEVEAK 349 (1064)
T ss_pred cccccccccchhhhhhcccCchh
Confidence 44588889999999999975544
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=44.99 E-value=1.8e+02 Score=36.94 Aligned_cols=17 Identities=47% Similarity=0.685 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045842 392 ERLQREKLRAERRRERE 408 (765)
Q Consensus 392 ~~reRe~iR~ERrRErE 408 (765)
++..|++++++|..-+|
T Consensus 863 e~~~r~~l~~qr~e~~e 879 (1018)
T KOG2002|consen 863 EKARREKLEKQREEYRE 879 (1018)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 17
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=43.10 E-value=4e+02 Score=27.60 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=25.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 288 INDNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKEKER 327 (765)
Q Consensus 288 INDkFA~LSEALyiADrkAREEV~~Rae~qk~la~KEKe~ 327 (765)
|.+.-..+...|..|+..-.+.-++.++.+++++.-+.+.
T Consensus 77 L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA 116 (205)
T PRK06231 77 LNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQA 116 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777777777666666665554433
No 18
>KOG4339 consensus RPEL repeat-containing protein [General function prediction only]
Probab=41.47 E-value=21 Score=41.85 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 303 EQKAREAVAMRSKVQKEMLMKEKERKEQELRALAQK 338 (765)
Q Consensus 303 DrkAREEV~~Rae~qk~la~KEKe~KEEkLR~LAqk 338 (765)
+|=.=||+++||.|+++-.+.|+++|||+-|.|-.|
T Consensus 422 qRPT~EELEqRNILK~kn~~~eqe~k~E~k~rL~RK 457 (533)
T KOG4339|consen 422 QRPTPEELEQRNILKRKNEAEEQEAKEEKKRRLLRK 457 (533)
T ss_pred cCCCHHHHHHhhhhcccChhhHHHHHHHHHHHHHHh
Confidence 344458999999999999999999999998888755
No 19
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=39.64 E-value=3.9e+02 Score=31.30 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=22.1
Q ss_pred CCcceEEEeeeccCCCCCCCcccccCCCCCCCC
Q 045842 200 GAKERVIRMMEMPVDPLEPPKFKHKRVPRASGS 232 (765)
Q Consensus 200 g~~qRIIkmvE~q~DPLePPkFK~KKipr~ppS 232 (765)
.+..++|+-.--|+--+.-.+-++-++.-.+-.
T Consensus 169 ~a~s~YIrytpsqq~~~sg~kqriIrmVe~q~D 201 (506)
T KOG2441|consen 169 RADSQYIRYTPSQQAGNSGSKQRIIRMVEMQKD 201 (506)
T ss_pred cCCcceeeecccchhhhhcchhhhhhhhhcccC
Confidence 356688988877777777677777666544433
No 20
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=38.52 E-value=22 Score=34.40 Aligned_cols=77 Identities=10% Similarity=0.135 Sum_probs=47.6
Q ss_pred CCcCCCCCCCCCCCCcceEEeCCCCCcchHHHHhhccCCCceeecccCCcccccccCCCcccccCcCCHHHHHHHHHHHH
Q 045842 78 PLDMGRNKSGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLIPKFLRNDEEEEETDEEMQREIDETTQETK 157 (765)
Q Consensus 78 PL~MG~k~~~~~~sn~lalqvD~~GkV~YDaIarqG~~~~kiV~Ss~~DlIPlr~r~~~~~~~l~rPseEei~etterTK 157 (765)
..+.|++++.=..+.++.|-+|++|+|. |+..=+|. +|.+.|+++--+.. .++..=+++.+...-..|+
T Consensus 39 ~V~iGr~~grf~~g~IvllaiD~~~~I~-d~~~M~G~----TVFARfk~~~~~~G------~~i~~l~~~~~~~~~~~~q 107 (118)
T PRK10234 39 RVGVGRSSGRFKPRVVVALALDEQQRVV-DTLFMKGL----TVFARPQKIPALTG------LHLGDLQPDVIFPHDPLSQ 107 (118)
T ss_pred ceEEecccCccCCCeEEEEEECCCCcEE-eeEEEccE----EEEecccchhhhcC------CcHHHcCHHhhccCCHHHH
Confidence 3455665331124567778899999986 44333454 99999998733322 2233233466666667788
Q ss_pred HHHHHHHh
Q 045842 158 ACLEKVVN 165 (765)
Q Consensus 158 ~ALEkll~ 165 (765)
.||+..++
T Consensus 108 ~Al~~A~~ 115 (118)
T PRK10234 108 NALSLALK 115 (118)
T ss_pred HHHHHHhc
Confidence 88887665
No 21
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=38.26 E-value=2.5e+02 Score=35.39 Aligned_cols=9 Identities=0% Similarity=-0.119 Sum_probs=4.2
Q ss_pred ecccCCccc
Q 045842 121 YSQHKDLIP 129 (765)
Q Consensus 121 ~Ss~~DlIP 129 (765)
+++|.+-++
T Consensus 552 v~~~~~~v~ 560 (988)
T KOG2072|consen 552 VTNYLKNVD 560 (988)
T ss_pred HHHHHhcch
Confidence 444444444
No 22
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=38.07 E-value=3.5e+02 Score=32.67 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=17.4
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHhhhh
Q 045842 142 DEEMQREIDETTQETKACLEKVVNVKL 168 (765)
Q Consensus 142 ~rPseEei~etterTK~ALEkll~~Ki 168 (765)
+.+.++.-.-++.-|+-+-++|...-.
T Consensus 84 ~l~e~~~s~~~~a~t~m~~~qL~~~~~ 110 (591)
T KOG2412|consen 84 ELEEEDHSQKCTAGTRMACAQLYLSDE 110 (591)
T ss_pred cccCcchhHhhhccchhHHHHHHHHHH
Confidence 344455556677777777777776554
No 23
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=37.13 E-value=2.4e+02 Score=35.35 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=13.3
Q ss_pred CCcccccCCCCCCCCCCCchhh
Q 045842 623 LSGTHIRRPSWFNAPTAPQPLI 644 (765)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~ 644 (765)
++|..|+|--=+.+...|+-|+
T Consensus 1176 FdGq~I~RQm~l~~~kpP~lLv 1197 (1259)
T KOG0163|consen 1176 FDGQWIARQMELHPDKPPILLV 1197 (1259)
T ss_pred cCcHHHHhhheecCCCCCeEEE
Confidence 3466666666666666666553
No 24
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=36.85 E-value=2.4e+02 Score=32.85 Aligned_cols=15 Identities=7% Similarity=-0.168 Sum_probs=9.2
Q ss_pred ccCCCccccCCCCCC
Q 045842 253 WKIPPCISNWKNPKG 267 (765)
Q Consensus 253 WkIPPcISNWKNpKG 267 (765)
=-||..|.+|+..+.
T Consensus 230 ~~~~~l~~~~~~~~~ 244 (582)
T PF09731_consen 230 SIFNDLIESINEGNL 244 (582)
T ss_pred Hhccchhhhhccccc
Confidence 446666667765544
No 25
>PLN03086 PRLI-interacting factor K; Provisional
Probab=36.45 E-value=67 Score=38.35 Aligned_cols=58 Identities=34% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccccccccccchhhhhhhhhhccCCCccchHHHHHHHHHHHHH
Q 045842 321 LMKEKERKEQELRALAQKARSERTGAAPPASVPIPSEKSAMDTSDMREDYEHERERRRERDMPKETREEREERLQREKLR 400 (765)
Q Consensus 321 a~KEKe~KEEkLR~LAqkAReER~g~~~~~~~~~~~~~~~~~~~~~~~~y~~d~~~~~~~~~~~~~~e~~e~~reRe~iR 400 (765)
+.+||.++|++-|.--.|.|.||..... ++++++||.|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~- 44 (567)
T PLN03086 7 RAREKLEREQRERKQRAKLKLERERKAK-----------------------------------------EEAAKQREAI- 44 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------HHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhh
Q 045842 401 AERRRERERERRLEAKDAAMGKKSK 425 (765)
Q Consensus 401 ~ERrRErERE~Rlsr~g~~e~K~~k 425 (765)
....|.+|+++..+ ..|.+.
T Consensus 45 ----~~~~~~~~~~~~~~-~~~~~~ 64 (567)
T PLN03086 45 ----EAAQRSRRLDAIEA-QIKADQ 64 (567)
T ss_pred ----HHHHHHHHHHHHHH-HHHHHH
No 26
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=36.11 E-value=1.4e+02 Score=32.79 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=5.1
Q ss_pred EEEeeeccCCC
Q 045842 205 VIRMMEMPVDP 215 (765)
Q Consensus 205 IIkmvE~q~DP 215 (765)
.|.|.+...+|
T Consensus 194 ~i~~TDq~~~~ 204 (321)
T PF07946_consen 194 YIHFTDQPSGK 204 (321)
T ss_pred EEEEECCCCCC
Confidence 34455554443
No 27
>PTZ00121 MAEBL; Provisional
Probab=32.04 E-value=2.1e+02 Score=38.13 Aligned_cols=7 Identities=43% Similarity=0.221 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 045842 297 EALYVAE 303 (765)
Q Consensus 297 EALyiAD 303 (765)
|++-.||
T Consensus 1137 e~~Rr~E 1143 (2084)
T PTZ00121 1137 EDARKAE 1143 (2084)
T ss_pred HHHHHHH
Confidence 3444443
No 28
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=31.46 E-value=5.1e+02 Score=25.38 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 290 DNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKE 324 (765)
Q Consensus 290 DkFA~LSEALyiADrkAREEV~~Rae~qk~la~KE 324 (765)
+.=....+.|..|++...+.-.++++.+++++.-+
T Consensus 53 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~ 87 (156)
T CHL00118 53 ERKEYIRKNLTKASEILAKANELTKQYEQELSKAR 87 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666665555555555554443
No 29
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.51 E-value=1.9e+02 Score=33.73 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 045842 290 DNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKEKERKE---QELRALAQKARSE 342 (765)
Q Consensus 290 DkFA~LSEALyiADrkAREEV~~Rae~qk~la~KEKe~KE---EkLR~LAqkAReE 342 (765)
.++.+..|..+.--+.+|+|..++-..+++.|+||+.+-+ |++|++-.+.|++
T Consensus 370 ~~RQ~~~e~~~K~th~~rqEaaQ~kk~Ek~Ka~kekl~a~~d~Ek~rr~EakerkR 425 (440)
T KOG2357|consen 370 KNRQRVEEEFLKLTHAARQEAAQEKKAEKKKAEKEKLKASGDPEKQRRKEAKERKR 425 (440)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 4666777777777778888887777777777777665543 6777544444433
No 30
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=29.08 E-value=32 Score=42.97 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=9.1
Q ss_pred CCCCCcccCCCCCCCccc
Q 045842 232 SPPVPVMHSPPRPVTVKD 249 (765)
Q Consensus 232 SPP~PVLHSPpRKlTkeE 249 (765)
+.|+|+.+||.=.-+++|
T Consensus 526 Esp~pppRsPSPEPkvvD 543 (982)
T PF03154_consen 526 ESPPPPPRSPSPEPKVVD 543 (982)
T ss_pred CCCCCCCCCCCCCCcccc
Confidence 345555666644444444
No 31
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=28.61 E-value=6.6e+02 Score=26.05 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=2.7
Q ss_pred ccccCC
Q 045842 481 KGLFTA 486 (765)
Q Consensus 481 KPLF~~ 486 (765)
.|+|.-
T Consensus 206 ~pF~~k 211 (216)
T PF11600_consen 206 LPFFVK 211 (216)
T ss_pred cCceec
Confidence 355543
No 32
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=28.18 E-value=4.4e+02 Score=32.64 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccCCCchhh
Q 045842 394 LQREKLRAERRRERERERRLEAKDAAMGKKSKITRDRDRDISEK 437 (765)
Q Consensus 394 reRe~iR~ERrRErERE~Rlsr~g~~e~K~~klaReq~RDISEK 437 (765)
.+-++.+++|+++.||..-.++..- ..++++.+.+-+.+-++
T Consensus 326 ~kKqeek~KR~k~~Erkee~~rk~d--eerkK~e~ke~ea~E~r 367 (811)
T KOG4364|consen 326 LKKQEEKQKRAKIMERKEEKSRKSD--EERKKLESKEVEAQELR 367 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh--hhhhhhhhhHHHHHHHH
Confidence 3344445555555555555555553 23344444333444433
No 33
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=28.06 E-value=1.1e+03 Score=28.15 Aligned_cols=75 Identities=23% Similarity=0.314 Sum_probs=44.9
Q ss_pred cccCCCccccCCCCCCcccccchhhhhcCCCC-Cccccch-------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 252 DWKIPPCISNWKNPKGYTIPLDKRLAADGRGL-QDVQIND-------------NFAKLSEALYVAEQKAREAVAMRSKVQ 317 (765)
Q Consensus 252 ~WkIPPcISNWKNpKGYTIpLDKRLAADGRgL-q~v~IND-------------kFA~LSEALyiADrkAREEV~~Rae~q 317 (765)
+-=|+-..++|-=..=-.|||-+=...|+-.- ...+|.| .-..--+...++|++|-++-+.-.+.+
T Consensus 140 k~Gls~~y~eWpG~tqI~IPL~~~~~~~~~s~vdt~~i~~~~vv~~l~~~~dk~~~~rk~m~D~KEreaeea~k~aq~~K 219 (489)
T PF05262_consen 140 KAGLSRRYSEWPGKTQIVIPLSDNILSGSLSDVDTDEISDEKVVQELREDKDKGIDKRKDMVDIKEREAEEAAKRAQEAK 219 (489)
T ss_pred hcccccccccCCCCceEEEeccccccCCCccccchhhcccHHHHHHHhhccccChhhhhhhHHHHHHHhHHHHHHHHHHH
Confidence 44577778899888888999986555543322 1222432 122234667778888887776555455
Q ss_pred HHHHHHHHH
Q 045842 318 KEMLMKEKE 326 (765)
Q Consensus 318 k~la~KEKe 326 (765)
++..+++++
T Consensus 220 ~ea~qkq~~ 228 (489)
T PF05262_consen 220 KEAQQKQKE 228 (489)
T ss_pred HHHHHHHHH
Confidence 555444433
No 34
>PF15402 Spc7_N: N-terminus of kinetochore NMS complex subunit Spc7
Probab=27.90 E-value=64 Score=40.51 Aligned_cols=40 Identities=35% Similarity=0.601 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhccCCCch
Q 045842 387 REEREERLQREKLRAERRRERERERRLEAKDAAMGKKSKITRDRDRDIS 435 (765)
Q Consensus 387 ~e~~e~~reRe~iR~ERrRErERE~Rlsr~g~~e~K~~klaReq~RDIS 435 (765)
+|...++||||+. || +|+||+.=|++..+ |++-|| ||=||
T Consensus 141 eeqqaAarEREe~--er-~e~ek~~il~~R~A---RRKSlA---nRRVS 180 (927)
T PF15402_consen 141 EEQQAAAREREER--ER-AEREKEAILERREA---RRKSLA---NRRVS 180 (927)
T ss_pred HHHHHHHHHHHHH--HH-HHHHHHHHHHHHHH---HHhhhh---ccccc
Confidence 3444566777754 32 35555555555543 444455 45555
No 35
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=27.14 E-value=3.1e+02 Score=32.20 Aligned_cols=75 Identities=20% Similarity=0.112 Sum_probs=41.5
Q ss_pred CCCCCcccccchhhhhcCCCC---CccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 263 KNPKGYTIPLDKRLAADGRGL---QDVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKEKERKEQELRALAQ 337 (765)
Q Consensus 263 KNpKGYTIpLDKRLAADGRgL---q~v~INDkFA~LSEALyiADrkAREEV~~Rae~qk~la~KEKe~KEEkLR~LAq 337 (765)
|+.++-++||--.+....-.. ..++=+.+--++...|+++...-.+..++|-..++.-++++..+.|+.....|+
T Consensus 251 ~~~~~~~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~~~q~~~~~~~er~~r~~~~~eQd~eyq~s 328 (460)
T KOG1363|consen 251 KASKSERFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEERRLQMRRSEQDEREARLALEQEQDDEYQAS 328 (460)
T ss_pred chhhcccCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHHhhcccchhHHHHHHHHHHhhHHHHHHH
Confidence 455677777766665544110 011111333455566777777777777777666666666666666644443333
No 36
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=24.01 E-value=9e+02 Score=25.82 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 290 DNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKE 324 (765)
Q Consensus 290 DkFA~LSEALyiADrkAREEV~~Rae~qk~la~KE 324 (765)
+.=......|..|++.-.+.-+++.+.+++++.-+
T Consensus 36 eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~ 70 (250)
T PRK14474 36 KRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLE 70 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666776666666666666666555443
No 37
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=23.21 E-value=4.5e+02 Score=27.36 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 290 DNFAKLSEALYVAEQKAREAVAMRSKVQKEMLMKEKERKEQELRALAQKAR 340 (765)
Q Consensus 290 DkFA~LSEALyiADrkAREEV~~Rae~qk~la~KEKe~KEEkLR~LAqkAR 340 (765)
+-=.+.-+.+....+..++.+++|.+|.++ +++.+++.+++|.+|-++-.
T Consensus 121 e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~-a~~~~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 121 ELGKEYREELEEEEEIYKEGLKIRQELIEE-AKKKREELEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666777778888877765 45556666667766665543
No 38
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=22.91 E-value=7.7e+02 Score=24.61 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 294 KLSEALYVAEQKAREAVAMRSKVQKEMLM 322 (765)
Q Consensus 294 ~LSEALyiADrkAREEV~~Rae~qk~la~ 322 (765)
.+.+.|..|++.-.+.-+++++.++++..
T Consensus 53 ~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~ 81 (173)
T PRK13453 53 DINRDIDDAEQAKLNAQKLEEENKQKLKE 81 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444444444444433
No 39
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=22.66 E-value=22 Score=33.61 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=30.3
Q ss_pred CcCCCCCCCCCCCCcceEEeCCCCCcchHHHHhhccCCCceeecccCCcc
Q 045842 79 LDMGRNKSGKPGSNILPVSVDAHGNVAYDAIVKQNENSKKIVYSQHKDLI 128 (765)
Q Consensus 79 L~MG~k~~~~~~sn~lalqvD~~GkV~YDaIarqG~~~~kiV~Ss~~DlI 128 (765)
.+.|+.++.=..+.++.|-+|++|+|..-.+. +|. +|.+.|+++=
T Consensus 39 V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M-~G~----TVFArFk~~~ 83 (109)
T PF06923_consen 39 VGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIM-KGI----TVFARFKPLP 83 (109)
T ss_pred EEEeeecCcccCCeEEEEEECCCCcEEEEEEE-ece----EEEEeeEehH
Confidence 34565533113467788889999999854443 454 8999999873
No 40
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=21.96 E-value=1.6e+02 Score=32.38 Aligned_cols=73 Identities=30% Similarity=0.441 Sum_probs=34.4
Q ss_pred CccccccccCCCccccCCCCCCc---cccc-------chhhhhcCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 246 TVKDQQDWKIPPCISNWKNPKGY---TIPL-------DKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAVAMRSK 315 (765)
Q Consensus 246 TkeEQq~WkIPPcISNWKNpKGY---TIpL-------DKRLAADGRgLq~v~INDkFA~LSEALyiADrkAREEV~~Rae 315 (765)
+.+..--|++.+...++++..|| +++| +..+.. ++++.--|..|=++=.+
T Consensus 240 ~~~~~~lw~~~~~~~~~~~~~~ft~fa~~LNe~~~~~~~~~~p-----------------tDSr~R~d~~al~~gd~--- 299 (354)
T PF01237_consen 240 TGESKLLWDANPLPPNPKKYYGFTQFAIPLNELTPELEEKLPP-----------------TDSRWRPDQRALENGDI--- 299 (354)
T ss_dssp GGGEEEEEETTTS-SS--B----------G-------G-GS-T-----------------TBHHHHHHHHHHHHT-H---
T ss_pred CCCceEEEECCCCcccccceecccccccccccccccccccCCc-----------------hhccchHHHHHHHcCCH---
Confidence 34445679999999999888866 5566 212211 12233333333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 316 VQKEMLMKEKERKEQELRALAQKARSE 342 (765)
Q Consensus 316 ~qk~la~KEKe~KEEkLR~LAqkAReE 342 (765)
+.|++||.+=||+-|+.+ +.|++
T Consensus 300 ---~~A~~eK~~lEe~QR~~r-k~R~~ 322 (354)
T PF01237_consen 300 ---DKAQEEKKRLEEKQRADR-KERKE 322 (354)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHH-HHHHH
Confidence 667888888888887765 44544
No 41
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=21.85 E-value=36 Score=40.05 Aligned_cols=32 Identities=44% Similarity=0.688 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhhhhhccCCCchhhh
Q 045842 399 LRAERRRERERERRLEAKDAAMGKKSKITRDRDRDISEKF 438 (765)
Q Consensus 399 iR~ERrRErERE~Rlsr~g~~e~K~~klaReq~RDISEKI 438 (765)
+--|.+-|||+|+|+.+... +| -+=|||-|-.
T Consensus 514 l~peqkaeREkERR~aNNAR--ER------lRVRDINeAf 545 (632)
T KOG3910|consen 514 LNPEQKAEREKERRMANNAR--ER------LRVRDINEAF 545 (632)
T ss_pred cChhhhhhHHHHHHhhhhhh--hh------eehhhHHHHH
Confidence 33466778888888888774 23 2368998854
No 42
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=21.65 E-value=1.1e+02 Score=39.05 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=19.6
Q ss_pred eeeeecccCCCCcccccCCCCCCCCCC
Q 045842 613 ASVDVFNSNDLSGTHIRRPSWFNAPTA 639 (765)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (765)
.+|.|-|+- --|.|+|.|-|.++|+-
T Consensus 573 ~~v~VgN~~-srGIyLRep~~~~~p~e 598 (1304)
T KOG1114|consen 573 INVNVGNSC-SRGIYLREPTQVCSPSE 598 (1304)
T ss_pred EEEeecccc-ccceEecCCcccCCccc
Confidence 356676765 46899999999988764
No 43
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=21.51 E-value=4.7e+02 Score=30.49 Aligned_cols=16 Identities=50% Similarity=0.665 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 045842 401 AERRRERERERRLEAK 416 (765)
Q Consensus 401 ~ERrRErERE~Rlsr~ 416 (765)
+..|||.+||.|.++.
T Consensus 351 ~~~~~~~~~~~~~~~~ 366 (429)
T PRK00247 351 AQKRRAAEREINREAR 366 (429)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444555666666443
No 44
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=21.27 E-value=36 Score=40.23 Aligned_cols=59 Identities=27% Similarity=0.403 Sum_probs=45.4
Q ss_pred CCCccccc---cccCCCccccCCCCCCcccccchhhhhcCCCCCccccc-hhHHHHHHHHHHHHHHHH
Q 045842 244 PVTVKDQQ---DWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQIN-DNFAKLSEALYVAEQKAR 307 (765)
Q Consensus 244 KlTkeEQq---~WkIPPcISNWKNpKGYTIpLDKRLAADGRgLq~v~IN-DkFA~LSEALyiADrkAR 307 (765)
-||++|.. .|.|||-|.=| |+.|||| -|+.++ ..-.-..|. =++.+|=+||-..+.+++
T Consensus 442 QlTvQEiStmiR~gl~p~ifvl-NN~GYTI---Er~IHg-~~~~YNdI~~Wd~~~l~~afg~~~~~~~ 504 (557)
T COG3961 442 QLTVQEISTMIRWGLKPIIFVL-NNDGYTI---ERAIHG-PTAPYNDIQSWDYTALPEAFGAKNGEAK 504 (557)
T ss_pred hhhHHHHHHHHHcCCCcEEEEE-cCCCcEE---EehhcC-CCcCcccccccchhhhhhhcCCCCceEE
Confidence 68999864 69999999998 7799999 688875 222222343 589999999998888775
No 45
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=20.72 E-value=7.1e+02 Score=30.16 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 315 KVQKEMLMKEKERKEQELRALAQK 338 (765)
Q Consensus 315 e~qk~la~KEKe~KEEkLR~LAqk 338 (765)
.++||..+-|++.|.|+-|.+|+.
T Consensus 408 r~rkqqleae~e~kreearrkaee 431 (708)
T KOG3654|consen 408 RRRKQQLEAEKEQKREEARRKAEE 431 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHh
Confidence 445566666677776776666643
No 46
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=20.70 E-value=8.5e+02 Score=24.31 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 290 DNFAKLSEALYVAEQKAREAVAMRSKVQKEMLM 322 (765)
Q Consensus 290 DkFA~LSEALyiADrkAREEV~~Rae~qk~la~ 322 (765)
+.-.++.+.|..|+..-.+..++..+.++++.+
T Consensus 53 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~ 85 (167)
T PRK08475 53 SRINKISKRLEEIQEKLKESKEKKEDALKKLEE 85 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555444443
No 47
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.02 E-value=2.7e+02 Score=32.01 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045842 311 AMRSKVQKEMLMKEKERKEQEL 332 (765)
Q Consensus 311 ~~Rae~qk~la~KEKe~KEEkL 332 (765)
.+|+-+.+++++||+++||+..
T Consensus 323 ~l~~~~ekk~~lKeqRkkeQ~e 344 (405)
T KOG2963|consen 323 ALRKRHEKKRRLKEQRKKEQEE 344 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777766654
Done!