Query 045842
Match_columns 765
No_of_seqs 177 out of 215
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 10:15:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k7n_A Peptidyl-prolyl CIS-tra 97.9 3.1E-06 1.1E-10 84.2 2.1 31 54-84 173-203 (203)
2 1f5n_A Interferon-induced guan 17.7 1.1E+03 0.038 26.7 13.0 13 261-273 426-438 (592)
3 1v9d_A Diaphanous protein homo 17.6 1.8E+02 0.006 30.3 6.1 21 143-163 209-229 (340)
4 3nmd_A CGMP dependent protein 14.1 3.9E+02 0.013 23.1 6.2 42 292-338 21-62 (72)
5 3sjd_D Golgi to ER traffic pro 13.3 95 0.0033 24.8 2.1 19 408-426 23-43 (46)
6 3b8m_A Ferric enterobactin (en 9.8 1.1E+03 0.037 24.1 9.2 47 252-310 100-152 (280)
7 3oja_A Leucine-rich immune mol 9.6 1.3E+03 0.045 24.3 10.1 17 422-438 453-469 (487)
8 2q2f_A Selenoprotein S; anti-p 9.4 8.7E+02 0.03 21.8 7.0 29 290-318 40-68 (89)
9 1wt6_A Myotonin-protein kinase 8.9 8.4E+02 0.029 21.5 6.7 35 288-322 29-63 (81)
10 3nmd_A CGMP dependent protein 8.8 7.4E+02 0.025 21.4 6.2 36 294-329 23-58 (72)
No 1
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=97.89 E-value=3.1e-06 Score=84.21 Aligned_cols=31 Identities=61% Similarity=0.987 Sum_probs=26.5
Q ss_pred CCccCCcccCCCCCCCCccccccCCCcCCCC
Q 045842 54 GFVPRKIEDFGDGGAFPEIHIGQYPLDMGRN 84 (765)
Q Consensus 54 gw~Pr~~eDFgDGGAFPEIhvAQYPL~MG~k 84 (765)
|--|.+-.-=||||||||+||+||||+||||
T Consensus 173 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (203)
T 2k7n_A 173 GSGGGSGGGSGDGGAFPEIHVAQYPLDMGRK 203 (203)
T ss_dssp CTTCCSSCCCSCBCCCTTTTSCCCSSSTTTC
T ss_pred CCCCCCCCCCccCccccceeecccccccCCC
Confidence 4456666677999999999999999999986
No 2
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=17.70 E-value=1.1e+03 Score=26.73 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=8.5
Q ss_pred cCCCCCCcccccc
Q 045842 261 NWKNPKGYTIPLD 273 (765)
Q Consensus 261 NWKNpKGYTIpLD 273 (765)
.|.-|-||..=++
T Consensus 426 ~~~~p~g~~~~~~ 438 (592)
T 1f5n_A 426 IYSKPGGYRLFVQ 438 (592)
T ss_dssp TTSSTTHHHHHHH
T ss_pred CcCCCCcHHHHHH
Confidence 4777888765443
No 3
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=17.62 E-value=1.8e+02 Score=30.34 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=13.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHH
Q 045842 143 EEMQREIDETTQETKACLEKV 163 (765)
Q Consensus 143 rPseEei~etterTK~ALEkl 163 (765)
+-+-+++.......+.-|..+
T Consensus 209 kvs~~~l~~~l~~l~~~~~~~ 229 (340)
T 1v9d_A 209 RVSAENLQKSLDQMKKQIADV 229 (340)
T ss_dssp HCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHH
Confidence 446677777766666666543
No 4
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=14.11 E-value=3.9e+02 Score=23.11 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 292 FAKLSEALYVAEQKAREAVAMRSKVQKEMLMKEKERKEQELRALAQK 338 (765)
Q Consensus 292 FA~LSEALyiADrkAREEV~~Rae~qk~la~KEKe~KEEkLR~LAqk 338 (765)
.-+|=++|. +..|||+++-++-+ ..+++-.+||+.+++|=..
T Consensus 21 i~eLq~~L~----~K~eELr~kd~~I~-eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 21 LRDLQYALQ----EKIEELRQRDALID-ELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 455665555 45555666555533 3345556667777766443
No 5
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=13.30 E-value=95 Score=24.84 Aligned_cols=19 Identities=37% Similarity=0.372 Sum_probs=8.5
Q ss_pred HHHHHHHhhhh--hhcchhhh
Q 045842 408 ERERRLEAKDA--AMGKKSKI 426 (765)
Q Consensus 408 ERE~Rlsr~g~--~e~K~~kl 426 (765)
-||+|..++.. +..|+.++
T Consensus 23 rRERR~aKi~~G~assRLNkI 43 (46)
T 3sjd_D 23 LRERRQKKFSNGGASSRLNKI 43 (46)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHH
Confidence 34444444432 14565554
No 6
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=9.85 E-value=1.1e+03 Score=24.14 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=30.4
Q ss_pred cc-cCCCccccCCCCCC-----cccccchhhhhcCCCCCccccchhHHHHHHHHHHHHHHHHHHH
Q 045842 252 DW-KIPPCISNWKNPKG-----YTIPLDKRLAADGRGLQDVQINDNFAKLSEALYVAEQKAREAV 310 (765)
Q Consensus 252 ~W-kIPPcISNWKNpKG-----YTIpLDKRLAADGRgLq~v~INDkFA~LSEALyiADrkAREEV 310 (765)
+| .|+..... |+... |||.+----+. +-..-|.+-+.-+..++++++
T Consensus 100 ~~~~i~~~~~~-~~~~~~~~~~~~lsf~a~t~~-----------~A~~lL~~YI~fv~~~~~~~l 152 (280)
T 3b8m_A 100 KMKAVDDNASK-KKDEPSLYTSWTLSFTAPTSE-----------EAQTVLSGYIDYISALVVKES 152 (280)
T ss_dssp TEEEEETTTSS-CTTSCCSSCCEEEEEEESSHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhcccccccc-cCCCcccccceEEEEEeCCHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 67 37766554 44442 68876543333 566677888888888888776
No 7
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=9.57 E-value=1.3e+03 Score=24.30 Aligned_cols=17 Identities=12% Similarity=0.220 Sum_probs=8.2
Q ss_pred chhhhhhccCCCchhhh
Q 045842 422 KKSKITRDRDRDISEKF 438 (765)
Q Consensus 422 K~~klaReq~RDISEKI 438 (765)
|.+++.++-+-.|.|+.
T Consensus 453 ~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 453 RLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHhcc
Confidence 44555544444444443
No 8
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=9.36 E-value=8.7e+02 Score=21.76 Aligned_cols=29 Identities=31% Similarity=0.298 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 290 DNFAKLSEALYVAEQKAREAVAMRSKVQK 318 (765)
Q Consensus 290 DkFA~LSEALyiADrkAREEV~~Rae~qk 318 (765)
|..+..=|||..|.+...|++...|+.-+
T Consensus 40 d~vv~RQEAl~aaRlRMQEeldAqAe~~k 68 (89)
T 2q2f_A 40 DVVVKRQEALAAARLKMQEELNAQVEKHK 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888999998888888888877654
No 9
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=8.89 E-value=8.4e+02 Score=21.51 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=20.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 288 INDNFAKLSEALYVAEQKAREAVAMRSKVQKEMLM 322 (765)
Q Consensus 288 INDkFA~LSEALyiADrkAREEV~~Rae~qk~la~ 322 (765)
|.+...+..+++-.++.+-|+.-..-.+++.++..
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~ 63 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777777554444444444333
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=8.79 E-value=7.4e+02 Score=21.36 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045842 294 KLSEALYVAEQKAREAVAMRSKVQKEMLMKEKERKE 329 (765)
Q Consensus 294 ~LSEALyiADrkAREEV~~Rae~qk~la~KEKe~KE 329 (765)
+|=++|...+.+-|+--..=.++++++.+|+.+-++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!