Query 045843
Match_columns 913
No_of_seqs 467 out of 3931
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-96 3E-101 869.1 46.4 819 14-906 2-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.3E-62 5E-67 612.2 46.6 444 158-638 182-691 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.2E-44 4.7E-49 387.3 18.7 272 165-437 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.8 1.6E-20 3.4E-25 236.5 16.8 161 717-892 304-464 (968)
5 PLN00113 leucine-rich repeat r 99.8 3.3E-20 7.2E-25 233.5 19.1 64 830-894 474-537 (968)
6 KOG0444 Cytoskeletal regulator 99.8 2.8E-22 6.1E-27 213.9 -4.2 315 503-890 52-372 (1255)
7 KOG4194 Membrane glycoprotein 99.8 1.9E-19 4.1E-24 191.7 7.9 337 505-886 101-445 (873)
8 PLN03210 Resistant to P. syrin 99.8 2.2E-18 4.7E-23 216.9 16.8 124 506-638 589-714 (1153)
9 KOG4194 Membrane glycoprotein 99.7 1.9E-19 4.1E-24 191.8 0.2 325 507-877 126-465 (873)
10 KOG0444 Cytoskeletal regulator 99.7 1.2E-19 2.6E-24 194.1 -5.1 316 502-892 28-351 (1255)
11 KOG0472 Leucine-rich repeat pr 99.6 1E-17 2.2E-22 171.3 -6.6 334 503-893 203-541 (565)
12 KOG0618 Serine/threonine phosp 99.5 3.6E-16 7.8E-21 176.1 -3.2 112 508-621 23-137 (1081)
13 KOG4658 Apoptotic ATPase [Sign 99.5 5.4E-14 1.2E-18 168.0 7.9 307 507-875 546-866 (889)
14 PRK15387 E3 ubiquitin-protein 99.5 1.8E-13 3.8E-18 160.0 11.5 254 508-867 203-456 (788)
15 PRK15387 E3 ubiquitin-protein 99.4 2.7E-13 6E-18 158.4 11.8 259 528-894 201-459 (788)
16 KOG0618 Serine/threonine phosp 99.4 1E-14 2.2E-19 164.6 -0.4 264 507-843 220-488 (1081)
17 KOG0472 Leucine-rich repeat pr 99.4 7.2E-15 1.6E-19 150.7 -3.6 261 507-814 46-309 (565)
18 PRK15370 E3 ubiquitin-protein 99.3 6.1E-12 1.3E-16 148.3 12.3 115 507-638 179-293 (754)
19 PRK04841 transcriptional regul 99.3 2.2E-10 4.7E-15 144.0 25.7 283 162-483 16-332 (903)
20 KOG4237 Extracellular matrix p 99.3 2.1E-13 4.5E-18 140.0 -2.2 116 516-639 56-175 (498)
21 PRK15370 E3 ubiquitin-protein 99.3 1E-11 2.2E-16 146.4 9.5 228 505-814 198-427 (754)
22 PRK00411 cdc6 cell division co 99.2 2.1E-09 4.5E-14 121.1 26.6 286 160-462 30-357 (394)
23 KOG0617 Ras suppressor protein 99.2 2.3E-13 5.1E-18 123.7 -5.1 111 519-638 24-137 (264)
24 TIGR03015 pepcterm_ATPase puta 99.2 1.5E-09 3.3E-14 115.3 23.0 178 178-358 40-242 (269)
25 KOG0617 Ras suppressor protein 99.2 2E-12 4.3E-17 117.7 -2.1 129 501-638 51-183 (264)
26 TIGR02928 orc1/cdc6 family rep 99.1 1.6E-08 3.5E-13 112.7 26.8 287 161-463 16-350 (365)
27 KOG4237 Extracellular matrix p 99.1 2.5E-12 5.4E-17 132.3 -4.1 313 504-844 65-399 (498)
28 PRK00080 ruvB Holliday junctio 99.1 9.4E-09 2E-13 112.0 23.2 273 157-464 22-311 (328)
29 TIGR00635 ruvB Holliday juncti 99.1 5.9E-09 1.3E-13 112.9 20.7 271 159-464 3-290 (305)
30 PF01637 Arch_ATPase: Archaeal 99.0 1.8E-09 3.8E-14 112.3 11.9 189 162-353 1-233 (234)
31 COG2256 MGS1 ATPase related to 98.9 1.9E-08 4.2E-13 105.2 14.8 175 155-353 19-211 (436)
32 PF05729 NACHT: NACHT domain 98.9 1.3E-08 2.9E-13 99.3 12.1 137 182-323 1-163 (166)
33 COG2909 MalT ATP-dependent tra 98.9 1.5E-07 3.3E-12 107.4 21.3 281 169-485 24-340 (894)
34 PF05496 RuvB_N: Holliday junc 98.8 2.6E-08 5.6E-13 97.6 11.6 176 155-359 19-226 (233)
35 PRK13342 recombination factor 98.8 4.4E-08 9.5E-13 110.0 14.1 177 157-357 9-199 (413)
36 cd00116 LRR_RI Leucine-rich re 98.8 1.9E-09 4.1E-14 118.0 2.2 88 546-638 17-118 (319)
37 PRK06893 DNA replication initi 98.8 1.3E-07 2.7E-12 97.2 14.7 152 179-358 37-207 (229)
38 COG2255 RuvB Holliday junction 98.7 1.3E-06 2.8E-11 87.4 20.3 220 156-405 22-282 (332)
39 cd00116 LRR_RI Leucine-rich re 98.7 6.3E-09 1.4E-13 113.8 3.3 86 526-612 21-121 (319)
40 PF14580 LRR_9: Leucine-rich r 98.6 2.1E-08 4.6E-13 96.5 4.5 122 507-638 20-150 (175)
41 PF14580 LRR_9: Leucine-rich r 98.6 5.2E-08 1.1E-12 93.8 5.3 117 514-638 5-123 (175)
42 PTZ00112 origin recognition co 98.6 6.6E-06 1.4E-10 95.0 22.6 198 161-359 756-987 (1164)
43 PRK04195 replication factor C 98.6 7.5E-06 1.6E-10 94.0 22.7 183 157-360 11-208 (482)
44 PRK07003 DNA polymerase III su 98.5 8.6E-06 1.9E-10 93.7 21.9 181 156-358 12-225 (830)
45 KOG0532 Leucine-rich repeat (L 98.5 2.9E-09 6.2E-14 115.0 -5.9 118 510-637 79-198 (722)
46 KOG4341 F-box protein containi 98.5 4.4E-09 9.5E-14 109.7 -4.4 161 720-884 293-456 (483)
47 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.2E-06 2.6E-11 90.4 13.1 165 164-356 21-203 (226)
48 TIGR02903 spore_lon_C ATP-depe 98.5 8.1E-06 1.8E-10 95.7 20.9 199 157-357 151-398 (615)
49 PTZ00202 tuzin; Provisional 98.4 6.5E-05 1.4E-09 80.8 24.0 156 158-323 260-434 (550)
50 PF13855 LRR_8: Leucine rich r 98.4 2.4E-07 5.3E-12 73.0 3.7 58 528-585 1-59 (61)
51 PRK12402 replication factor C 98.4 1.9E-05 4.2E-10 87.0 19.9 191 158-353 13-225 (337)
52 PRK14961 DNA polymerase III su 98.4 1.3E-05 2.8E-10 88.4 18.2 190 157-353 13-219 (363)
53 COG1474 CDC6 Cdc6-related prot 98.4 2.6E-05 5.6E-10 85.1 19.9 195 162-357 19-241 (366)
54 cd01128 rho_factor Transcripti 98.4 8.8E-07 1.9E-11 91.0 8.1 91 180-271 15-115 (249)
55 PLN03025 replication factor C 98.4 9.1E-06 2E-10 88.2 16.1 180 157-352 10-198 (319)
56 PRK14949 DNA polymerase III su 98.4 6.6E-06 1.4E-10 96.6 15.7 183 157-358 13-225 (944)
57 PRK14960 DNA polymerase III su 98.4 3.3E-05 7.1E-10 88.2 20.6 178 157-353 12-218 (702)
58 KOG1259 Nischarin, modulator o 98.3 8.6E-08 1.9E-12 95.6 -0.1 127 501-638 279-409 (490)
59 PF13173 AAA_14: AAA domain 98.3 1.6E-06 3.5E-11 80.2 8.3 115 181-314 2-126 (128)
60 KOG2028 ATPase related to the 98.3 4.9E-06 1.1E-10 85.6 11.8 173 159-349 137-331 (554)
61 PRK14963 DNA polymerase III su 98.3 5.2E-06 1.1E-10 94.5 13.4 198 157-359 11-223 (504)
62 PRK09376 rho transcription ter 98.3 1.8E-06 3.9E-11 92.2 8.8 89 182-271 170-268 (416)
63 PF13401 AAA_22: AAA domain; P 98.3 1.8E-06 3.9E-11 80.4 7.9 114 181-294 4-125 (131)
64 PRK05564 DNA polymerase III su 98.3 1.9E-05 4.1E-10 85.6 16.6 172 160-353 4-189 (313)
65 cd00009 AAA The AAA+ (ATPases 98.3 4.7E-06 1E-10 79.3 10.8 121 163-296 1-131 (151)
66 PLN03150 hypothetical protein; 98.3 1.4E-06 3E-11 103.0 8.3 90 529-618 419-510 (623)
67 PRK00440 rfc replication facto 98.3 7.2E-05 1.6E-09 81.7 21.4 179 157-353 14-202 (319)
68 PRK13341 recombination factor 98.3 9E-06 2E-10 96.1 14.9 169 156-349 24-212 (725)
69 PRK08727 hypothetical protein; 98.3 1.6E-05 3.5E-10 81.8 14.7 165 159-351 18-201 (233)
70 PRK14962 DNA polymerase III su 98.3 3.9E-05 8.5E-10 86.6 18.9 185 156-358 10-223 (472)
71 PRK09087 hypothetical protein; 98.2 3.6E-05 7.8E-10 78.5 16.3 157 180-373 43-221 (226)
72 KOG0532 Leucine-rich repeat (L 98.2 2.1E-07 4.7E-12 100.9 -0.1 124 505-638 120-244 (722)
73 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.5E-11 69.2 4.1 59 552-611 1-61 (61)
74 PRK08084 DNA replication initi 98.2 2.3E-05 5E-10 80.8 14.9 162 167-356 31-211 (235)
75 PRK12323 DNA polymerase III su 98.2 1.6E-05 3.6E-10 90.3 14.7 194 156-354 12-225 (700)
76 COG4886 Leucine-rich repeat (L 98.2 1.5E-06 3.1E-11 98.1 5.5 92 525-618 113-205 (394)
77 COG3899 Predicted ATPase [Gene 98.2 0.00011 2.3E-09 89.4 21.2 298 162-482 2-385 (849)
78 PRK14956 DNA polymerase III su 98.2 2E-05 4.4E-10 87.3 13.4 190 156-350 14-218 (484)
79 KOG3207 Beta-tubulin folding c 98.2 2.3E-07 5.1E-12 97.7 -1.7 62 549-611 118-184 (505)
80 PRK06645 DNA polymerase III su 98.2 6.7E-05 1.4E-09 85.1 17.6 189 156-351 17-226 (507)
81 PRK14957 DNA polymerase III su 98.1 7.6E-05 1.6E-09 85.2 17.7 183 157-358 13-225 (546)
82 PF13191 AAA_16: AAA ATPase do 98.1 6.3E-06 1.4E-10 82.0 7.8 47 162-208 2-51 (185)
83 PRK07994 DNA polymerase III su 98.1 3.3E-05 7.2E-10 89.5 14.4 188 157-354 13-220 (647)
84 PRK15386 type III secretion pr 98.1 1.6E-05 3.5E-10 86.0 10.4 63 549-616 49-112 (426)
85 COG4886 Leucine-rich repeat (L 98.1 2.5E-06 5.4E-11 96.2 4.4 114 506-621 116-232 (394)
86 PRK07940 DNA polymerase III su 98.1 0.00014 3.1E-09 80.1 17.6 180 159-354 4-213 (394)
87 PRK14958 DNA polymerase III su 98.1 5.8E-05 1.3E-09 86.3 15.0 180 156-353 12-219 (509)
88 PRK07471 DNA polymerase III su 98.0 3.7E-05 8E-10 84.0 12.3 187 158-354 17-238 (365)
89 PRK14951 DNA polymerase III su 98.0 8.7E-05 1.9E-09 85.9 15.9 190 157-353 13-224 (618)
90 TIGR01242 26Sp45 26S proteasom 98.0 4.1E-05 8.8E-10 84.8 12.9 170 155-348 117-328 (364)
91 KOG2120 SCF ubiquitin ligase, 98.0 1.8E-07 3.9E-12 93.4 -5.2 82 530-611 187-272 (419)
92 KOG4341 F-box protein containi 98.0 5.1E-07 1.1E-11 94.7 -2.2 138 718-865 317-461 (483)
93 PRK05642 DNA replication initi 98.0 9.2E-05 2E-09 76.2 14.4 150 181-358 45-212 (234)
94 KOG2120 SCF ubiquitin ligase, 98.0 4.1E-07 8.9E-12 91.0 -2.9 63 774-841 311-373 (419)
95 PRK05896 DNA polymerase III su 98.0 8.3E-05 1.8E-09 84.9 15.0 191 157-356 13-223 (605)
96 PRK14087 dnaA chromosomal repl 98.0 0.00022 4.9E-09 80.5 18.4 203 181-397 141-370 (450)
97 PLN03150 hypothetical protein; 98.0 1.1E-05 2.4E-10 95.4 8.1 105 507-611 419-527 (623)
98 PRK08903 DnaA regulatory inact 98.0 0.0001 2.2E-09 76.0 14.3 164 164-359 23-204 (227)
99 TIGR00767 rho transcription te 98.0 3.1E-05 6.7E-10 83.4 10.3 90 181-271 168-267 (415)
100 PRK14964 DNA polymerase III su 98.0 0.00019 4.2E-09 80.7 17.1 177 157-351 10-214 (491)
101 PRK09112 DNA polymerase III su 98.0 0.00025 5.4E-09 77.1 17.4 189 158-354 21-240 (351)
102 PRK08691 DNA polymerase III su 98.0 0.00012 2.7E-09 84.4 15.6 179 156-353 12-219 (709)
103 KOG3207 Beta-tubulin folding c 98.0 1.7E-06 3.7E-11 91.3 0.6 107 504-610 119-233 (505)
104 KOG1259 Nischarin, modulator o 98.0 1.4E-06 3.1E-11 87.0 -0.2 111 503-616 304-416 (490)
105 PRK14955 DNA polymerase III su 98.0 0.00012 2.6E-09 81.9 14.6 194 157-353 13-227 (397)
106 PRK14969 DNA polymerase III su 98.0 0.00017 3.8E-09 83.0 16.3 183 157-357 13-224 (527)
107 PRK14959 DNA polymerase III su 97.9 0.00068 1.5E-08 78.1 20.6 193 157-359 13-226 (624)
108 COG3903 Predicted ATPase [Gene 97.9 2.9E-05 6.4E-10 82.5 8.8 291 180-485 13-316 (414)
109 TIGR02397 dnaX_nterm DNA polym 97.9 0.0004 8.6E-09 77.1 18.4 179 157-355 11-219 (355)
110 TIGR00678 holB DNA polymerase 97.9 0.00034 7.3E-09 69.7 15.7 154 171-349 3-186 (188)
111 PRK03992 proteasome-activating 97.9 0.00019 4.1E-09 79.9 14.9 167 157-347 128-336 (389)
112 PRK14954 DNA polymerase III su 97.9 0.0005 1.1E-08 80.0 18.3 198 156-355 12-230 (620)
113 PF05621 TniB: Bacterial TniB 97.9 0.0006 1.3E-08 70.7 16.9 187 167-353 44-260 (302)
114 PRK14952 DNA polymerase III su 97.9 0.00032 6.9E-09 81.0 16.3 193 157-359 10-225 (584)
115 PRK07764 DNA polymerase III su 97.9 0.00035 7.7E-09 83.9 17.3 191 157-358 12-226 (824)
116 PRK14970 DNA polymerase III su 97.8 0.00058 1.2E-08 76.0 17.7 182 157-356 14-212 (367)
117 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00027 5.8E-09 86.1 16.0 177 158-347 185-389 (852)
118 KOG2227 Pre-initiation complex 97.8 0.00094 2E-08 72.0 17.9 206 161-370 151-386 (529)
119 PRK09111 DNA polymerase III su 97.8 0.00043 9.2E-09 80.5 16.9 192 157-354 21-233 (598)
120 PF00308 Bac_DnaA: Bacterial d 97.8 0.00016 3.4E-09 73.5 11.5 156 181-353 34-207 (219)
121 KOG4579 Leucine-rich repeat (L 97.8 4.9E-06 1.1E-10 73.9 0.3 110 508-618 29-142 (177)
122 PRK11331 5-methylcytosine-spec 97.8 0.00015 3.2E-09 79.7 11.7 106 160-271 175-284 (459)
123 KOG2543 Origin recognition com 97.8 0.00031 6.6E-09 73.7 13.3 157 161-322 7-192 (438)
124 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 4E-10 57.0 3.2 39 553-592 2-40 (44)
125 PHA02544 44 clamp loader, smal 97.8 0.0002 4.4E-09 77.9 12.9 142 157-321 18-171 (316)
126 PRK07133 DNA polymerase III su 97.8 0.00046 1E-08 80.6 16.2 187 157-355 15-221 (725)
127 PTZ00361 26 proteosome regulat 97.8 0.00023 4.9E-09 79.3 13.0 153 155-326 178-370 (438)
128 TIGR02639 ClpA ATP-dependent C 97.8 0.00027 5.8E-09 85.5 14.7 154 158-323 180-358 (731)
129 PTZ00454 26S protease regulato 97.8 0.00052 1.1E-08 75.9 15.6 171 154-347 139-350 (398)
130 PRK08451 DNA polymerase III su 97.8 0.00084 1.8E-08 76.4 17.4 176 157-354 11-218 (535)
131 PRK14950 DNA polymerase III su 97.8 0.00095 2.1E-08 78.4 18.5 190 157-355 13-222 (585)
132 PRK14971 DNA polymerase III su 97.7 0.0011 2.4E-08 77.7 18.5 178 157-353 14-221 (614)
133 PRK15386 type III secretion pr 97.7 6.7E-05 1.4E-09 81.3 7.3 102 504-616 50-173 (426)
134 PRK06305 DNA polymerase III su 97.7 0.0013 2.8E-08 74.5 17.9 180 157-356 14-225 (451)
135 PF12799 LRR_4: Leucine Rich r 97.7 2.5E-05 5.3E-10 56.3 2.7 40 575-615 1-40 (44)
136 PRK14953 DNA polymerase III su 97.7 0.0016 3.5E-08 74.1 18.7 180 157-355 13-221 (486)
137 PF14516 AAA_35: AAA-like doma 97.7 0.0062 1.3E-07 66.3 22.5 190 163-361 14-246 (331)
138 TIGR00362 DnaA chromosomal rep 97.7 0.0019 4.2E-08 72.7 19.2 197 181-395 136-357 (405)
139 TIGR02881 spore_V_K stage V sp 97.7 0.00026 5.7E-09 74.4 11.3 149 161-325 7-193 (261)
140 KOG0991 Replication factor C, 97.7 0.0007 1.5E-08 65.9 12.6 96 157-272 24-126 (333)
141 PRK00149 dnaA chromosomal repl 97.7 0.0017 3.6E-08 74.2 18.3 197 181-397 148-371 (450)
142 CHL00095 clpC Clp protease ATP 97.6 0.00048 1.1E-08 84.3 14.1 152 159-322 178-353 (821)
143 PRK06620 hypothetical protein; 97.6 0.00037 8E-09 70.5 10.9 132 182-352 45-187 (214)
144 COG0466 Lon ATP-dependent Lon 97.6 0.0035 7.5E-08 71.4 19.1 154 161-325 324-510 (782)
145 KOG0989 Replication factor C, 97.6 0.00086 1.9E-08 68.4 12.9 182 156-349 32-225 (346)
146 CHL00181 cbbX CbbX; Provisiona 97.6 0.00071 1.5E-08 71.7 13.0 128 183-325 61-211 (287)
147 KOG2982 Uncharacterized conser 97.6 5.2E-05 1.1E-09 76.3 4.0 84 525-609 68-156 (418)
148 KOG3665 ZYG-1-like serine/thre 97.6 5.4E-05 1.2E-09 89.3 4.8 133 504-638 120-260 (699)
149 TIGR01241 FtsH_fam ATP-depende 97.6 0.00086 1.9E-08 77.5 14.6 198 155-374 50-295 (495)
150 PRK06647 DNA polymerase III su 97.6 0.0015 3.3E-08 75.6 16.4 187 157-353 13-219 (563)
151 PRK14088 dnaA chromosomal repl 97.6 0.0021 4.5E-08 72.7 16.9 177 181-374 130-332 (440)
152 TIGR03689 pup_AAA proteasome A 97.5 0.00091 2E-08 75.7 13.5 161 156-325 178-380 (512)
153 TIGR00763 lon ATP-dependent pr 97.5 0.0058 1.3E-07 74.5 21.5 152 161-323 321-505 (775)
154 KOG1909 Ran GTPase-activating 97.5 4.7E-06 1E-10 85.7 -4.4 92 774-866 211-308 (382)
155 PRK14965 DNA polymerase III su 97.5 0.0022 4.7E-08 75.0 16.1 191 157-357 13-224 (576)
156 PRK14086 dnaA chromosomal repl 97.5 0.004 8.6E-08 71.6 17.6 177 181-374 314-515 (617)
157 PRK14948 DNA polymerase III su 97.5 0.0051 1.1E-07 72.2 18.9 192 157-355 13-223 (620)
158 KOG0531 Protein phosphatase 1, 97.5 4.7E-05 1E-09 86.1 2.1 88 525-616 92-179 (414)
159 PRK05563 DNA polymerase III su 97.5 0.0047 1E-07 71.9 18.5 186 157-352 13-218 (559)
160 TIGR02880 cbbX_cfxQ probable R 97.5 0.0011 2.5E-08 70.2 12.2 128 183-325 60-210 (284)
161 smart00382 AAA ATPases associa 97.4 0.00072 1.6E-08 63.5 9.6 110 182-294 3-125 (148)
162 KOG1859 Leucine-rich repeat pr 97.4 7.1E-06 1.5E-10 91.7 -4.9 106 501-611 159-266 (1096)
163 PRK12422 chromosomal replicati 97.4 0.009 1.9E-07 67.4 19.5 148 181-347 141-306 (445)
164 KOG0531 Protein phosphatase 1, 97.4 2.8E-05 6.1E-10 87.9 -0.6 104 526-639 70-173 (414)
165 CHL00176 ftsH cell division pr 97.4 0.0036 7.8E-08 73.5 16.5 167 158-346 181-386 (638)
166 TIGR03346 chaperone_ClpB ATP-d 97.4 0.002 4.3E-08 79.3 14.7 154 158-323 171-349 (852)
167 PRK08118 topology modulation p 97.3 0.00013 2.9E-09 70.6 3.1 35 182-216 2-37 (167)
168 PRK10865 protein disaggregatio 97.3 0.0038 8.3E-08 76.5 16.3 153 158-323 176-354 (857)
169 COG1222 RPT1 ATP-dependent 26S 97.3 0.0087 1.9E-07 62.7 16.1 182 153-359 144-372 (406)
170 PRK07399 DNA polymerase III su 97.3 0.011 2.5E-07 63.4 17.9 188 159-354 3-221 (314)
171 COG0593 DnaA ATPase involved i 97.3 0.0058 1.3E-07 66.7 15.5 254 180-483 112-390 (408)
172 PRK11034 clpA ATP-dependent Cl 97.3 0.0012 2.6E-08 78.8 11.2 152 160-323 186-362 (758)
173 PRK08116 hypothetical protein; 97.3 0.00089 1.9E-08 70.2 8.9 99 182-294 115-220 (268)
174 COG1373 Predicted ATPase (AAA+ 97.3 0.0027 5.8E-08 70.7 13.1 131 165-319 22-163 (398)
175 PRK08181 transposase; Validate 97.3 0.0025 5.4E-08 66.5 11.7 103 174-295 101-209 (269)
176 PRK10536 hypothetical protein; 97.2 0.0049 1.1E-07 62.8 12.8 135 160-296 55-214 (262)
177 KOG2004 Mitochondrial ATP-depe 97.2 0.016 3.5E-07 65.9 17.6 153 161-324 412-597 (906)
178 PF04665 Pox_A32: Poxvirus A32 97.2 0.00089 1.9E-08 67.8 7.2 35 183-219 15-49 (241)
179 TIGR00602 rad24 checkpoint pro 97.2 0.0021 4.5E-08 74.8 11.1 199 156-358 80-327 (637)
180 PRK10787 DNA-binding ATP-depen 97.2 0.01 2.2E-07 71.7 17.2 152 161-323 323-506 (784)
181 KOG1644 U2-associated snRNP A' 97.1 0.00052 1.1E-08 65.6 4.6 99 509-608 45-149 (233)
182 KOG2982 Uncharacterized conser 97.1 8.9E-05 1.9E-09 74.7 -0.6 60 549-611 68-133 (418)
183 PF00004 AAA: ATPase family as 97.1 0.0013 2.8E-08 61.1 6.9 23 184-206 1-23 (132)
184 KOG0733 Nuclear AAA ATPase (VC 97.1 0.015 3.2E-07 64.9 15.7 95 158-271 188-294 (802)
185 PRK05707 DNA polymerase III su 97.0 0.019 4E-07 62.1 16.1 91 258-354 105-203 (328)
186 KOG4579 Leucine-rich repeat (L 97.0 0.00014 3E-09 64.9 -0.4 103 507-611 54-158 (177)
187 COG3267 ExeA Type II secretory 97.0 0.053 1.2E-06 54.5 17.2 173 179-356 49-247 (269)
188 PRK12377 putative replication 97.0 0.0017 3.7E-08 66.8 7.1 98 180-293 100-204 (248)
189 PRK07261 topology modulation p 96.9 0.0034 7.4E-08 61.2 8.5 67 183-271 2-69 (171)
190 PRK12727 flagellar biosynthesi 96.9 0.035 7.5E-07 62.6 17.1 87 181-270 350-439 (559)
191 PF05673 DUF815: Protein of un 96.9 0.01 2.2E-07 59.8 11.3 51 156-206 23-77 (249)
192 KOG1859 Leucine-rich repeat pr 96.9 8E-05 1.7E-09 83.6 -4.0 107 504-613 185-293 (1096)
193 PF10443 RNA12: RNA12 protein; 96.8 0.026 5.6E-07 61.5 14.9 191 165-361 1-285 (431)
194 PRK12608 transcription termina 96.8 0.0083 1.8E-07 64.6 11.0 100 170-270 121-231 (380)
195 PRK08769 DNA polymerase III su 96.8 0.054 1.2E-06 58.0 16.8 180 166-355 10-209 (319)
196 CHL00195 ycf46 Ycf46; Provisio 96.8 0.071 1.5E-06 60.7 18.6 171 158-348 226-429 (489)
197 TIGR01243 CDC48 AAA family ATP 96.7 0.019 4.2E-07 69.8 14.7 169 158-348 176-381 (733)
198 PRK06835 DNA replication prote 96.7 0.068 1.5E-06 57.6 16.8 98 182-294 184-288 (329)
199 PF01695 IstB_IS21: IstB-like 96.7 0.0028 6E-08 62.1 5.7 74 181-271 47-120 (178)
200 PHA00729 NTP-binding motif con 96.6 0.0093 2E-07 59.8 9.1 35 171-205 7-41 (226)
201 PRK10865 protein disaggregatio 96.6 0.31 6.8E-06 60.0 24.0 45 161-205 569-622 (857)
202 PRK06526 transposase; Provisio 96.6 0.0012 2.5E-08 68.6 2.7 74 181-271 98-171 (254)
203 PRK08058 DNA polymerase III su 96.6 0.061 1.3E-06 58.5 16.1 152 162-321 7-180 (329)
204 COG1136 SalX ABC-type antimicr 96.6 0.0053 1.1E-07 61.4 7.1 126 181-309 31-217 (226)
205 TIGR01243 CDC48 AAA family ATP 96.5 0.044 9.4E-07 66.8 15.9 167 159-348 452-657 (733)
206 PF02562 PhoH: PhoH-like prote 96.5 0.0042 9E-08 61.5 5.8 130 164-296 4-157 (205)
207 cd03216 ABC_Carb_Monos_I This 96.5 0.0067 1.5E-07 58.6 7.2 121 181-307 26-155 (163)
208 PF13177 DNA_pol3_delta2: DNA 96.5 0.025 5.4E-07 54.5 11.0 132 164-311 1-162 (162)
209 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0048 1E-07 66.2 6.5 56 161-216 52-118 (361)
210 KOG0741 AAA+-type ATPase [Post 96.5 0.049 1.1E-06 59.8 13.8 139 180-344 537-704 (744)
211 KOG3665 ZYG-1-like serine/thre 96.5 0.0012 2.5E-08 78.3 1.8 103 527-638 121-230 (699)
212 COG1223 Predicted ATPase (AAA+ 96.5 0.026 5.7E-07 56.3 10.7 166 159-347 120-318 (368)
213 cd01133 F1-ATPase_beta F1 ATP 96.5 0.013 2.8E-07 60.7 9.1 88 182-271 70-175 (274)
214 PRK07952 DNA replication prote 96.5 0.023 5E-07 58.4 10.9 90 167-271 83-174 (244)
215 PRK06921 hypothetical protein; 96.4 0.012 2.6E-07 61.7 9.0 38 180-219 116-154 (266)
216 PRK09361 radB DNA repair and r 96.4 0.011 2.4E-07 60.6 8.7 84 181-269 23-117 (225)
217 COG1120 FepC ABC-type cobalami 96.4 0.015 3.2E-07 59.6 9.1 129 180-308 27-213 (258)
218 cd03238 ABC_UvrA The excision 96.4 0.02 4.4E-07 55.8 9.8 117 181-307 21-161 (176)
219 COG2884 FtsE Predicted ATPase 96.4 0.027 5.8E-07 53.8 9.8 117 181-300 28-202 (223)
220 COG1126 GlnQ ABC-type polar am 96.4 0.031 6.7E-07 54.7 10.4 124 181-307 28-209 (240)
221 cd03214 ABC_Iron-Siderophores_ 96.3 0.031 6.8E-07 55.0 10.9 123 181-307 25-171 (180)
222 TIGR02902 spore_lonB ATP-depen 96.3 0.11 2.4E-06 60.3 17.0 49 157-205 62-110 (531)
223 TIGR02237 recomb_radB DNA repa 96.3 0.016 3.4E-07 58.8 9.0 86 181-270 12-108 (209)
224 PRK06871 DNA polymerase III su 96.3 0.18 3.9E-06 54.2 17.3 169 167-351 9-200 (325)
225 PF13207 AAA_17: AAA domain; P 96.3 0.003 6.6E-08 57.6 3.3 24 183-206 1-24 (121)
226 PRK08939 primosomal protein Dn 96.3 0.011 2.3E-07 63.2 8.0 113 164-293 135-259 (306)
227 KOG2123 Uncharacterized conser 96.3 0.00038 8.2E-09 69.6 -2.9 107 527-638 18-127 (388)
228 PRK05541 adenylylsulfate kinas 96.3 0.012 2.6E-07 57.7 7.7 36 180-217 6-41 (176)
229 PTZ00494 tuzin-like protein; P 96.3 1.1 2.4E-05 48.9 22.3 154 161-323 372-544 (664)
230 TIGR02640 gas_vesic_GvpN gas v 96.3 0.17 3.6E-06 53.2 16.5 57 166-229 8-64 (262)
231 KOG2228 Origin recognition com 96.2 0.036 7.7E-07 57.7 10.7 161 160-323 24-219 (408)
232 PF07693 KAP_NTPase: KAP famil 96.2 0.22 4.7E-06 54.4 18.0 43 166-208 2-47 (325)
233 TIGR03346 chaperone_ClpB ATP-d 96.2 0.028 6.1E-07 69.3 12.0 104 161-271 566-679 (852)
234 cd03222 ABC_RNaseL_inhibitor T 96.2 0.028 6.2E-07 54.8 9.6 109 180-308 24-146 (177)
235 COG1484 DnaC DNA replication p 96.2 0.028 6.2E-07 58.4 10.2 75 180-270 104-178 (254)
236 COG4608 AppF ABC-type oligopep 96.2 0.02 4.4E-07 58.3 8.7 118 180-300 38-175 (268)
237 KOG0730 AAA+-type ATPase [Post 96.2 0.12 2.7E-06 58.6 15.6 156 157-338 431-631 (693)
238 cd03223 ABCD_peroxisomal_ALDP 96.2 0.03 6.5E-07 54.3 9.5 121 181-307 27-160 (166)
239 KOG1644 U2-associated snRNP A' 96.2 0.0076 1.6E-07 57.9 5.1 102 527-638 41-150 (233)
240 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.02 4.2E-07 59.3 8.7 89 181-270 19-126 (235)
241 COG1124 DppF ABC-type dipeptid 96.1 0.029 6.2E-07 56.0 9.1 120 181-300 33-207 (252)
242 KOG0733 Nuclear AAA ATPase (VC 96.1 0.047 1E-06 61.1 11.5 147 180-347 544-717 (802)
243 cd03230 ABC_DR_subfamily_A Thi 96.1 0.028 6E-07 55.0 9.1 121 181-307 26-168 (173)
244 cd01393 recA_like RecA is a b 96.1 0.035 7.5E-07 57.1 10.3 87 181-270 19-125 (226)
245 COG0542 clpA ATP-binding subun 96.1 0.22 4.7E-06 58.9 17.6 104 161-271 492-605 (786)
246 cd01131 PilT Pilus retraction 96.1 0.0095 2.1E-07 59.6 5.8 108 182-298 2-112 (198)
247 PLN00020 ribulose bisphosphate 96.1 0.02 4.3E-07 61.1 8.3 28 179-206 146-173 (413)
248 PRK04296 thymidine kinase; Pro 96.1 0.0074 1.6E-07 60.0 4.9 110 182-296 3-117 (190)
249 KOG2035 Replication factor C, 96.1 0.18 3.9E-06 51.1 14.4 222 161-397 14-280 (351)
250 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.025 5.3E-07 53.4 8.2 110 181-307 26-140 (144)
251 PF00448 SRP54: SRP54-type pro 96.1 0.029 6.2E-07 55.8 9.0 87 181-269 1-93 (196)
252 KOG0728 26S proteasome regulat 96.1 0.13 2.9E-06 51.0 13.1 175 159-357 145-366 (404)
253 cd03247 ABCC_cytochrome_bd The 96.1 0.034 7.4E-07 54.7 9.5 121 181-307 28-169 (178)
254 PRK05703 flhF flagellar biosyn 96.0 0.26 5.7E-06 55.4 17.4 87 181-270 221-310 (424)
255 KOG1969 DNA replication checkp 96.0 0.019 4.2E-07 65.5 8.1 74 180-272 325-400 (877)
256 PRK13695 putative NTPase; Prov 96.0 0.0093 2E-07 58.4 5.1 34 183-217 2-35 (174)
257 PRK04132 replication factor C 96.0 0.14 2.9E-06 61.9 15.6 151 189-356 574-733 (846)
258 KOG2739 Leucine-rich acidic nu 96.0 0.0054 1.2E-07 61.6 3.4 101 505-607 42-151 (260)
259 PRK09183 transposase/IS protei 96.0 0.15 3.3E-06 53.2 14.3 25 182-206 103-127 (259)
260 cd03246 ABCC_Protease_Secretio 96.0 0.034 7.3E-07 54.4 8.9 120 181-307 28-168 (173)
261 KOG1947 Leucine rich repeat pr 95.9 0.0012 2.6E-08 76.6 -1.8 144 718-872 292-443 (482)
262 COG2812 DnaX DNA polymerase II 95.9 0.061 1.3E-06 60.8 11.6 184 156-348 12-214 (515)
263 TIGR03499 FlhF flagellar biosy 95.9 0.045 9.7E-07 58.1 9.9 87 180-268 193-281 (282)
264 cd00267 ABC_ATPase ABC (ATP-bi 95.9 0.027 5.8E-07 54.1 7.6 119 182-307 26-153 (157)
265 cd01120 RecA-like_NTPases RecA 95.9 0.05 1.1E-06 52.4 9.6 40 183-224 1-40 (165)
266 COG0396 sufC Cysteine desulfur 95.9 0.072 1.6E-06 52.7 10.3 60 246-305 149-216 (251)
267 PRK06696 uridine kinase; Valid 95.9 0.014 3E-07 59.8 5.8 43 164-206 2-47 (223)
268 COG1102 Cmk Cytidylate kinase 95.8 0.03 6.4E-07 52.0 7.1 45 183-240 2-46 (179)
269 PRK06090 DNA polymerase III su 95.8 0.33 7.1E-06 52.1 16.1 169 167-354 10-201 (319)
270 TIGR03345 VI_ClpV1 type VI sec 95.8 0.022 4.7E-07 69.7 8.2 46 161-206 567-621 (852)
271 PF00560 LRR_1: Leucine Rich R 95.8 0.0045 9.7E-08 37.0 1.1 20 554-573 2-21 (22)
272 cd01394 radB RadB. The archaea 95.8 0.041 8.9E-07 56.1 8.9 43 180-224 18-60 (218)
273 COG0470 HolB ATPase involved i 95.8 0.079 1.7E-06 57.8 11.8 133 162-309 3-167 (325)
274 KOG0652 26S proteasome regulat 95.7 0.18 3.8E-06 50.4 12.5 55 152-206 163-230 (424)
275 TIGR02012 tigrfam_recA protein 95.7 0.033 7.2E-07 59.4 8.1 84 180-270 54-144 (321)
276 PRK15455 PrkA family serine pr 95.7 0.013 2.9E-07 66.1 5.1 47 160-206 76-128 (644)
277 TIGR00959 ffh signal recogniti 95.7 0.11 2.3E-06 58.1 12.2 27 180-206 98-124 (428)
278 COG0542 clpA ATP-binding subun 95.7 0.088 1.9E-06 62.1 11.9 154 158-323 168-346 (786)
279 KOG0738 AAA+-type ATPase [Post 95.6 0.2 4.3E-06 53.3 13.1 46 161-206 213-270 (491)
280 KOG0735 AAA+-type ATPase [Post 95.6 0.043 9.3E-07 62.5 8.5 73 181-270 431-505 (952)
281 cd03237 ABC_RNaseL_inhibitor_d 95.6 0.077 1.7E-06 55.1 10.1 127 182-308 26-190 (246)
282 PRK06547 hypothetical protein; 95.5 0.022 4.7E-07 55.4 5.5 36 171-206 5-40 (172)
283 PRK10733 hflB ATP-dependent me 95.5 0.16 3.5E-06 60.5 13.9 148 159-325 151-337 (644)
284 cd00983 recA RecA is a bacter 95.5 0.04 8.8E-07 58.8 7.9 83 181-270 55-144 (325)
285 PRK13543 cytochrome c biogenes 95.5 0.092 2E-06 53.3 10.3 128 180-307 36-210 (214)
286 COG2274 SunT ABC-type bacterio 95.5 0.84 1.8E-05 54.6 19.5 52 248-299 616-673 (709)
287 PF05659 RPW8: Arabidopsis bro 95.5 0.14 3.1E-06 47.9 10.5 110 12-135 6-115 (147)
288 PRK08233 hypothetical protein; 95.5 0.043 9.4E-07 54.1 7.7 26 181-206 3-28 (182)
289 PRK10867 signal recognition pa 95.5 0.13 2.9E-06 57.4 12.1 27 180-206 99-125 (433)
290 PRK09354 recA recombinase A; P 95.5 0.049 1.1E-06 58.6 8.4 84 180-270 59-149 (349)
291 PRK00771 signal recognition pa 95.5 0.12 2.6E-06 57.9 11.7 86 180-269 94-185 (437)
292 PRK07993 DNA polymerase III su 95.4 0.66 1.4E-05 50.4 17.1 170 167-352 9-202 (334)
293 PF08423 Rad51: Rad51; InterP 95.4 0.059 1.3E-06 56.2 8.7 89 181-270 38-144 (256)
294 TIGR02238 recomb_DMC1 meiotic 95.4 0.073 1.6E-06 57.1 9.6 90 180-270 95-202 (313)
295 COG1121 ZnuC ABC-type Mn/Zn tr 95.4 0.085 1.8E-06 53.8 9.5 125 182-307 31-212 (254)
296 KOG0731 AAA+-type ATPase conta 95.4 0.17 3.7E-06 59.4 13.0 171 158-350 309-520 (774)
297 PRK09270 nucleoside triphospha 95.4 0.097 2.1E-06 53.8 10.2 28 179-206 31-58 (229)
298 KOG1909 Ran GTPase-activating 95.4 0.01 2.2E-07 61.8 2.9 106 506-611 157-282 (382)
299 cd03229 ABC_Class3 This class 95.4 0.043 9.2E-07 54.0 7.3 120 181-307 26-174 (178)
300 KOG0734 AAA+-type ATPase conta 95.4 0.043 9.3E-07 60.3 7.6 48 159-206 303-362 (752)
301 COG0464 SpoVK ATPases of the A 95.4 0.4 8.6E-06 55.7 16.4 148 160-326 242-426 (494)
302 cd03228 ABCC_MRP_Like The MRP 95.4 0.094 2E-06 51.1 9.6 121 180-307 27-167 (171)
303 PRK14722 flhF flagellar biosyn 95.4 0.078 1.7E-06 57.9 9.7 88 181-270 137-226 (374)
304 PRK06964 DNA polymerase III su 95.4 0.59 1.3E-05 50.7 16.3 87 258-354 131-225 (342)
305 COG1419 FlhF Flagellar GTP-bin 95.3 0.15 3.3E-06 55.2 11.5 88 180-270 202-292 (407)
306 cd03269 ABC_putative_ATPase Th 95.3 0.12 2.5E-06 52.4 10.4 25 181-205 26-50 (210)
307 TIGR02858 spore_III_AA stage I 95.3 0.078 1.7E-06 55.4 9.1 121 169-297 98-231 (270)
308 COG2607 Predicted ATPase (AAA+ 95.3 0.097 2.1E-06 52.0 9.0 113 157-295 57-183 (287)
309 KOG1514 Origin recognition com 95.3 0.75 1.6E-05 52.9 17.2 194 162-358 398-625 (767)
310 PF03215 Rad17: Rad17 cell cyc 95.3 0.21 4.6E-06 57.3 13.3 54 161-218 20-78 (519)
311 cd03265 ABC_DrrA DrrA is the A 95.3 0.15 3.3E-06 52.0 11.2 25 181-205 26-50 (220)
312 cd03115 SRP The signal recogni 95.3 0.075 1.6E-06 52.0 8.5 24 183-206 2-25 (173)
313 TIGR02639 ClpA ATP-dependent C 95.3 0.061 1.3E-06 65.3 9.5 101 161-271 455-565 (731)
314 PRK08699 DNA polymerase III su 95.3 0.43 9.3E-06 51.6 15.0 81 258-350 112-202 (325)
315 PF00154 RecA: recA bacterial 95.3 0.32 6.9E-06 51.9 13.6 84 181-271 53-143 (322)
316 KOG0743 AAA+-type ATPase [Post 95.3 0.44 9.6E-06 52.1 14.6 145 183-361 237-417 (457)
317 cd03235 ABC_Metallic_Cations A 95.2 0.11 2.4E-06 52.7 10.0 25 181-205 25-49 (213)
318 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.051 1.1E-06 53.7 7.3 24 183-206 1-24 (183)
319 TIGR00390 hslU ATP-dependent p 95.2 0.061 1.3E-06 58.8 8.2 73 161-235 13-103 (441)
320 PRK09544 znuC high-affinity zi 95.2 0.11 2.3E-06 54.3 9.8 129 180-308 29-195 (251)
321 PRK11889 flhF flagellar biosyn 95.1 0.2 4.4E-06 54.4 11.7 88 180-270 240-331 (436)
322 COG0488 Uup ATPase components 95.1 0.089 1.9E-06 60.4 9.4 63 246-309 158-225 (530)
323 PRK11248 tauB taurine transpor 95.1 0.15 3.3E-06 53.3 10.6 59 250-308 137-203 (255)
324 cd03301 ABC_MalK_N The N-termi 95.1 0.18 3.8E-06 51.3 10.8 25 181-205 26-50 (213)
325 PRK11247 ssuB aliphatic sulfon 95.1 0.18 3.8E-06 52.8 11.0 127 181-307 38-207 (257)
326 COG1116 TauB ABC-type nitrate/ 95.1 0.069 1.5E-06 53.8 7.3 127 181-307 29-204 (248)
327 COG0468 RecA RecA/RadA recombi 95.0 0.11 2.4E-06 54.2 9.1 90 180-271 59-153 (279)
328 COG0563 Adk Adenylate kinase a 95.0 0.045 9.8E-07 53.4 6.0 24 183-206 2-25 (178)
329 PF01583 APS_kinase: Adenylyls 95.0 0.022 4.8E-07 53.7 3.7 35 182-218 3-37 (156)
330 cd03266 ABC_NatA_sodium_export 95.0 0.17 3.7E-06 51.6 10.6 25 181-205 31-55 (218)
331 cd03285 ABC_MSH2_euk MutS2 hom 95.0 0.0097 2.1E-07 60.6 1.4 170 180-360 29-219 (222)
332 TIGR02324 CP_lyasePhnL phospho 95.0 0.18 4E-06 51.6 10.9 25 181-205 34-58 (224)
333 COG4618 ArpD ABC-type protease 95.0 0.058 1.2E-06 59.4 7.2 22 182-203 363-384 (580)
334 COG1875 NYN ribonuclease and A 95.0 0.062 1.4E-06 56.6 7.0 134 162-297 226-390 (436)
335 TIGR03877 thermo_KaiC_1 KaiC d 95.0 0.16 3.5E-06 52.5 10.2 49 180-232 20-68 (237)
336 PRK12724 flagellar biosynthesi 95.0 0.085 1.8E-06 58.0 8.4 25 181-205 223-247 (432)
337 PRK10463 hydrogenase nickel in 95.0 0.088 1.9E-06 55.1 8.2 95 170-270 93-195 (290)
338 TIGR03740 galliderm_ABC gallid 94.9 0.18 3.8E-06 51.7 10.4 126 181-307 26-197 (223)
339 KOG2739 Leucine-rich acidic nu 94.9 0.012 2.6E-07 59.1 1.7 82 526-611 41-128 (260)
340 KOG0727 26S proteasome regulat 94.9 0.42 9.2E-06 47.6 12.1 48 159-206 154-214 (408)
341 cd03258 ABC_MetN_methionine_tr 94.9 0.13 2.8E-06 53.1 9.4 26 180-205 30-55 (233)
342 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.9 0.083 1.8E-06 54.1 7.9 124 181-307 48-215 (224)
343 cd03215 ABC_Carb_Monos_II This 94.9 0.094 2E-06 51.7 8.0 120 181-307 26-177 (182)
344 PRK15064 ABC transporter ATP-b 94.9 0.16 3.4E-06 59.7 11.1 61 248-308 162-226 (530)
345 cd02027 APSK Adenosine 5'-phos 94.9 0.089 1.9E-06 49.9 7.4 24 183-206 1-24 (149)
346 PRK07667 uridine kinase; Provi 94.9 0.037 8.1E-07 55.1 5.1 38 169-206 3-42 (193)
347 PF13604 AAA_30: AAA domain; P 94.9 0.11 2.3E-06 51.9 8.3 37 171-207 8-44 (196)
348 cd02019 NK Nucleoside/nucleoti 94.8 0.026 5.7E-07 45.4 3.2 23 183-205 1-23 (69)
349 TIGR01069 mutS2 MutS2 family p 94.8 0.03 6.6E-07 67.6 5.1 183 180-376 321-522 (771)
350 cd02025 PanK Pantothenate kina 94.8 0.13 2.8E-06 52.3 9.0 24 183-206 1-24 (220)
351 PF00485 PRK: Phosphoribulokin 94.8 0.023 4.9E-07 56.8 3.4 24 183-206 1-24 (194)
352 KOG0736 Peroxisome assembly fa 94.8 0.12 2.7E-06 59.5 9.4 92 161-271 673-776 (953)
353 PRK05342 clpX ATP-dependent pr 94.8 0.089 1.9E-06 58.6 8.3 46 161-206 72-133 (412)
354 COG1618 Predicted nucleotide k 94.8 0.039 8.4E-07 51.3 4.5 28 181-208 5-32 (179)
355 COG1131 CcmA ABC-type multidru 94.8 0.21 4.6E-06 53.3 10.9 119 182-300 32-202 (293)
356 PRK04301 radA DNA repair and r 94.8 0.15 3.2E-06 55.3 9.9 90 180-270 101-209 (317)
357 cd03281 ABC_MSH5_euk MutS5 hom 94.8 0.034 7.4E-07 56.3 4.6 113 181-300 29-159 (213)
358 PRK12723 flagellar biosynthesi 94.8 0.16 3.6E-06 55.9 10.1 88 180-270 173-265 (388)
359 TIGR00554 panK_bact pantothena 94.8 0.15 3.3E-06 53.8 9.5 27 179-205 60-86 (290)
360 PRK00889 adenylylsulfate kinas 94.8 0.1 2.2E-06 51.2 7.8 27 180-206 3-29 (175)
361 cd01135 V_A-ATPase_B V/A-type 94.8 0.13 2.7E-06 53.4 8.6 90 182-271 70-178 (276)
362 PF13238 AAA_18: AAA domain; P 94.7 0.023 5.1E-07 52.3 3.0 22 184-205 1-22 (129)
363 PRK06067 flagellar accessory p 94.7 0.22 4.8E-06 51.4 10.6 85 180-269 24-130 (234)
364 cd00561 CobA_CobO_BtuR ATP:cor 94.7 0.2 4.3E-06 47.6 9.2 112 182-296 3-139 (159)
365 PTZ00301 uridine kinase; Provi 94.7 0.042 9.2E-07 55.2 4.9 26 181-206 3-28 (210)
366 PRK11034 clpA ATP-dependent Cl 94.7 0.054 1.2E-06 65.1 6.6 101 161-271 459-569 (758)
367 CHL00095 clpC Clp protease ATP 94.7 0.094 2E-06 64.5 8.9 104 161-271 510-623 (821)
368 PRK11608 pspF phage shock prot 94.7 0.27 5.9E-06 53.4 11.6 44 161-204 7-52 (326)
369 KOG0729 26S proteasome regulat 94.7 0.2 4.4E-06 50.2 9.3 48 159-206 176-236 (435)
370 TIGR01188 drrA daunorubicin re 94.7 0.25 5.3E-06 53.2 11.2 58 249-307 132-197 (302)
371 KOG2123 Uncharacterized conser 94.7 0.0066 1.4E-07 61.0 -0.9 99 505-605 18-123 (388)
372 PF00006 ATP-synt_ab: ATP synt 94.7 0.1 2.2E-06 52.5 7.5 85 182-270 16-116 (215)
373 PF12775 AAA_7: P-loop contain 94.7 0.043 9.2E-07 57.7 5.1 90 169-270 22-111 (272)
374 KOG0739 AAA+-type ATPase [Post 94.7 6.3 0.00014 40.8 22.6 170 155-347 128-334 (439)
375 PF07728 AAA_5: AAA domain (dy 94.7 0.072 1.6E-06 49.9 6.2 74 184-270 2-76 (139)
376 PRK05480 uridine/cytidine kina 94.7 0.031 6.7E-07 56.6 4.0 26 180-205 5-30 (209)
377 TIGR01817 nifA Nif-specific re 94.7 0.27 5.8E-06 57.7 12.2 49 157-205 193-243 (534)
378 PRK06002 fliI flagellum-specif 94.6 0.14 3.1E-06 56.9 9.3 87 182-271 166-266 (450)
379 PRK11147 ABC transporter ATPas 94.6 0.18 3.9E-06 60.4 10.9 60 248-308 163-227 (635)
380 smart00534 MUTSac ATPase domai 94.6 0.019 4.2E-07 56.7 2.3 113 183-300 1-127 (185)
381 cd03268 ABC_BcrA_bacitracin_re 94.6 0.16 3.4E-06 51.4 9.0 57 251-307 136-199 (208)
382 TIGR03771 anch_rpt_ABC anchore 94.6 0.22 4.8E-06 50.9 10.2 59 249-307 121-186 (223)
383 cd03267 ABC_NatA_like Similar 94.6 0.27 5.8E-06 50.8 10.8 58 250-307 162-227 (236)
384 TIGR01420 pilT_fam pilus retra 94.6 0.095 2.1E-06 57.4 7.8 112 180-297 121-232 (343)
385 PRK13647 cbiO cobalt transport 94.6 0.23 5E-06 52.6 10.5 61 247-307 144-211 (274)
386 PF14532 Sigma54_activ_2: Sigm 94.6 0.053 1.1E-06 50.7 5.0 44 163-206 1-46 (138)
387 cd03283 ABC_MutS-like MutS-lik 94.6 0.17 3.6E-06 50.6 8.9 24 182-205 26-49 (199)
388 PF13671 AAA_33: AAA domain; P 94.6 0.029 6.3E-07 52.8 3.3 24 183-206 1-24 (143)
389 PRK13634 cbiO cobalt transport 94.6 0.26 5.6E-06 52.7 10.9 60 248-307 152-219 (290)
390 cd03232 ABC_PDR_domain2 The pl 94.5 0.13 2.9E-06 51.2 8.1 124 181-307 33-182 (192)
391 PRK09280 F0F1 ATP synthase sub 94.5 0.19 4.1E-06 56.2 9.9 89 182-271 145-250 (463)
392 PRK08972 fliI flagellum-specif 94.5 0.14 3.1E-06 56.7 8.8 87 181-271 162-264 (444)
393 PRK05201 hslU ATP-dependent pr 94.5 0.11 2.3E-06 57.0 7.7 74 161-236 16-107 (443)
394 PRK15439 autoinducer 2 ABC tra 94.5 0.24 5.3E-06 57.6 11.4 127 181-307 37-213 (510)
395 PRK03839 putative kinase; Prov 94.5 0.035 7.6E-07 54.7 3.8 24 183-206 2-25 (180)
396 TIGR00235 udk uridine kinase. 94.5 0.035 7.6E-07 56.1 3.8 27 180-206 5-31 (207)
397 PF08433 KTI12: Chromatin asso 94.5 0.11 2.4E-06 54.3 7.6 25 182-206 2-26 (270)
398 PF00560 LRR_1: Leucine Rich R 94.5 0.016 3.5E-07 34.6 0.8 22 576-598 1-22 (22)
399 PRK05022 anaerobic nitric oxid 94.5 0.36 7.8E-06 56.1 12.6 61 160-222 187-249 (509)
400 PRK13643 cbiO cobalt transport 94.5 0.31 6.7E-06 52.0 11.2 61 247-307 150-217 (288)
401 PTZ00088 adenylate kinase 1; P 94.4 0.096 2.1E-06 53.4 6.9 24 183-206 8-31 (229)
402 PLN03186 DNA repair protein RA 94.4 0.24 5.1E-06 53.8 10.2 90 180-270 122-229 (342)
403 TIGR02236 recomb_radA DNA repa 94.4 0.17 3.7E-06 54.7 9.3 58 180-238 94-155 (310)
404 PRK15429 formate hydrogenlyase 94.4 0.48 1E-05 57.4 14.0 47 159-205 375-423 (686)
405 KOG0744 AAA+-type ATPase [Post 94.4 0.17 3.7E-06 52.4 8.4 81 181-270 177-261 (423)
406 cd03227 ABC_Class2 ABC-type Cl 94.4 0.13 2.9E-06 49.5 7.5 112 182-309 22-155 (162)
407 cd00544 CobU Adenosylcobinamid 94.4 0.17 3.6E-06 49.0 8.1 81 184-270 2-84 (169)
408 PLN03187 meiotic recombination 94.4 0.31 6.8E-06 52.8 10.9 89 181-270 126-232 (344)
409 PRK13651 cobalt transporter AT 94.4 0.26 5.6E-06 53.0 10.4 60 248-307 172-238 (305)
410 TIGR00064 ftsY signal recognit 94.4 0.27 5.9E-06 51.7 10.3 89 179-270 70-165 (272)
411 cd03240 ABC_Rad50 The catalyti 94.4 0.45 9.8E-06 47.8 11.5 58 251-308 131-196 (204)
412 PRK12597 F0F1 ATP synthase sub 94.4 0.17 3.6E-06 56.9 9.0 89 182-271 144-249 (461)
413 cd01124 KaiC KaiC is a circadi 94.4 0.25 5.3E-06 48.9 9.6 45 183-231 1-45 (187)
414 COG3640 CooC CO dehydrogenase 94.3 0.19 4.2E-06 49.9 8.3 65 183-255 2-66 (255)
415 COG1428 Deoxynucleoside kinase 94.3 0.038 8.3E-07 54.0 3.5 26 181-206 4-29 (216)
416 PRK13409 putative ATPase RIL; 94.3 0.28 6E-06 57.9 11.4 125 181-308 365-528 (590)
417 PRK10418 nikD nickel transport 94.3 0.41 8.8E-06 50.1 11.6 25 181-205 29-53 (254)
418 TIGR01360 aden_kin_iso1 adenyl 94.3 0.041 8.8E-07 54.7 3.9 26 180-205 2-27 (188)
419 cd01121 Sms Sms (bacterial rad 94.3 0.15 3.2E-06 56.1 8.4 82 181-270 82-169 (372)
420 cd03236 ABC_RNaseL_inhibitor_d 94.3 0.32 6.8E-06 50.8 10.6 60 249-308 147-213 (255)
421 PRK10636 putative ABC transpor 94.3 0.22 4.8E-06 59.6 10.6 61 248-308 156-220 (638)
422 PRK13765 ATP-dependent proteas 94.3 0.087 1.9E-06 61.8 7.0 80 156-239 27-106 (637)
423 CHL00081 chlI Mg-protoporyphyr 94.3 0.063 1.4E-06 58.1 5.3 51 155-205 12-62 (350)
424 PRK06762 hypothetical protein; 94.3 0.042 9.2E-07 53.3 3.7 25 181-205 2-26 (166)
425 PRK12726 flagellar biosynthesi 94.2 0.32 6.8E-06 52.8 10.4 89 180-270 205-296 (407)
426 COG0572 Udk Uridine kinase [Nu 94.2 0.044 9.6E-07 54.3 3.7 27 180-206 7-33 (218)
427 cd03213 ABCG_EPDR ABCG transpo 94.2 0.22 4.7E-06 49.7 8.8 113 180-296 34-172 (194)
428 PRK13545 tagH teichoic acids e 94.2 0.29 6.4E-06 55.6 10.6 124 181-307 50-216 (549)
429 TIGR02974 phageshock_pspF psp 94.2 0.61 1.3E-05 50.7 12.8 43 163-205 2-46 (329)
430 PRK04328 hypothetical protein; 94.2 0.24 5.1E-06 51.6 9.3 41 180-222 22-62 (249)
431 PRK00279 adk adenylate kinase; 94.1 0.25 5.5E-06 50.2 9.2 24 183-206 2-25 (215)
432 TIGR02030 BchI-ChlI magnesium 94.1 0.081 1.8E-06 57.2 5.8 47 159-205 3-49 (337)
433 COG0488 Uup ATPase components 94.1 0.16 3.4E-06 58.4 8.4 130 180-309 347-511 (530)
434 PRK13531 regulatory ATPase Rav 94.1 0.085 1.8E-06 59.0 6.0 43 162-206 22-64 (498)
435 COG4181 Predicted ABC-type tra 94.1 0.39 8.4E-06 45.2 9.2 85 223-307 121-219 (228)
436 PRK08927 fliI flagellum-specif 94.1 0.25 5.5E-06 55.0 9.6 88 180-271 157-260 (442)
437 PRK14974 cell division protein 94.1 0.45 9.7E-06 51.4 11.3 89 180-271 139-234 (336)
438 TIGR00150 HI0065_YjeE ATPase, 94.0 0.13 2.8E-06 47.2 6.2 42 167-208 6-49 (133)
439 TIGR01425 SRP54_euk signal rec 94.0 0.45 9.7E-06 53.0 11.5 27 180-206 99-125 (429)
440 TIGR02239 recomb_RAD51 DNA rep 94.0 0.26 5.6E-06 53.1 9.5 90 180-270 95-202 (316)
441 KOG0726 26S proteasome regulat 94.0 0.52 1.1E-05 48.1 10.7 54 153-206 178-244 (440)
442 cd03243 ABC_MutS_homologs The 94.0 0.036 7.7E-07 55.8 2.7 112 182-300 30-156 (202)
443 PF00910 RNA_helicase: RNA hel 94.0 0.042 9.2E-07 48.7 2.9 23 184-206 1-23 (107)
444 PRK14721 flhF flagellar biosyn 94.0 0.37 7.9E-06 53.6 10.7 25 181-205 191-215 (420)
445 PRK13537 nodulation ABC transp 94.0 0.27 5.9E-06 52.9 9.6 57 250-307 147-211 (306)
446 PRK00409 recombination and DNA 94.0 0.037 8E-07 67.0 3.2 185 179-376 325-527 (782)
447 TIGR03881 KaiC_arch_4 KaiC dom 94.0 0.38 8.3E-06 49.4 10.4 46 180-229 19-64 (229)
448 PRK08533 flagellar accessory p 94.0 0.4 8.7E-06 49.2 10.4 48 181-232 24-71 (230)
449 COG0541 Ffh Signal recognition 94.0 1.9 4.1E-05 47.2 15.6 69 169-240 79-158 (451)
450 COG4133 CcmA ABC-type transpor 94.0 0.42 9.1E-06 45.9 9.4 53 246-298 135-193 (209)
451 PRK00625 shikimate kinase; Pro 94.0 0.055 1.2E-06 52.6 3.8 24 183-206 2-25 (173)
452 PF06309 Torsin: Torsin; Inte 93.9 0.12 2.7E-06 46.4 5.5 44 162-205 27-77 (127)
453 cd01129 PulE-GspE PulE/GspE Th 93.9 0.11 2.5E-06 54.3 6.3 103 164-275 63-165 (264)
454 TIGR03574 selen_PSTK L-seryl-t 93.9 0.12 2.6E-06 53.9 6.5 24 183-206 1-24 (249)
455 PTZ00035 Rad51 protein; Provis 93.9 0.5 1.1E-05 51.4 11.4 90 180-270 117-224 (337)
456 TIGR02314 ABC_MetN D-methionin 93.9 0.34 7.3E-06 52.9 10.1 61 247-307 146-214 (343)
457 PRK10938 putative molybdenum t 93.9 0.28 6E-06 57.0 10.2 61 247-307 141-208 (490)
458 PRK08149 ATP synthase SpaL; Va 93.8 0.22 4.8E-06 55.3 8.7 88 180-271 150-253 (428)
459 KOG0473 Leucine-rich repeat pr 93.8 0.0034 7.4E-08 61.3 -4.7 85 525-611 39-123 (326)
460 PF06745 KaiC: KaiC; InterPro 93.8 0.19 4.2E-06 51.5 7.8 86 180-270 18-126 (226)
461 cd03369 ABCC_NFT1 Domain 2 of 93.8 0.66 1.4E-05 46.8 11.6 26 180-205 33-58 (207)
462 TIGR03522 GldA_ABC_ATP gliding 93.8 0.31 6.8E-06 52.4 9.7 25 181-205 28-52 (301)
463 cd02023 UMPK Uridine monophosp 93.8 0.046 9.9E-07 54.8 3.0 23 183-205 1-23 (198)
464 KOG0927 Predicted transporter 93.8 0.61 1.3E-05 52.0 11.6 115 181-296 416-567 (614)
465 PRK11819 putative ABC transpor 93.8 0.36 7.8E-06 56.9 10.9 25 181-205 33-57 (556)
466 cd01132 F1_ATPase_alpha F1 ATP 93.8 0.28 6E-06 50.9 8.7 92 182-277 70-180 (274)
467 PRK11144 modC molybdate transp 93.8 0.51 1.1E-05 51.9 11.4 125 181-307 24-202 (352)
468 PF13245 AAA_19: Part of AAA d 93.8 0.17 3.8E-06 41.5 5.8 26 180-205 9-35 (76)
469 KOG1532 GTPase XAB1, interacts 93.7 0.34 7.3E-06 49.0 8.8 63 180-242 18-89 (366)
470 PF03205 MobB: Molybdopterin g 93.7 0.11 2.3E-06 48.6 5.1 39 182-221 1-39 (140)
471 cd03299 ABC_ModC_like Archeal 93.7 0.53 1.1E-05 48.6 10.8 127 181-307 25-203 (235)
472 PRK11153 metN DL-methionine tr 93.7 0.38 8.2E-06 52.7 10.2 60 248-307 147-214 (343)
473 PTZ00185 ATPase alpha subunit; 93.7 0.3 6.6E-06 54.7 9.3 88 182-270 190-300 (574)
474 TIGR00382 clpX endopeptidase C 93.7 0.26 5.7E-06 54.7 8.9 46 161-206 78-141 (413)
475 COG4555 NatA ABC-type Na+ tran 93.7 0.44 9.6E-06 46.2 9.1 27 180-206 27-53 (245)
476 TIGR03305 alt_F1F0_F1_bet alte 93.7 0.2 4.3E-06 55.9 7.9 89 182-271 139-244 (449)
477 PRK11000 maltose/maltodextrin 93.7 0.43 9.4E-06 52.8 10.6 127 181-307 29-207 (369)
478 PRK06936 type III secretion sy 93.7 0.26 5.7E-06 54.8 8.8 88 180-271 161-264 (439)
479 TIGR01041 ATP_syn_B_arch ATP s 93.6 0.26 5.6E-06 55.4 8.8 90 182-271 142-250 (458)
480 cd03233 ABC_PDR_domain1 The pl 93.6 0.54 1.2E-05 47.2 10.5 26 181-206 33-58 (202)
481 TIGR03498 FliI_clade3 flagella 93.6 0.24 5.3E-06 55.0 8.5 87 181-271 140-242 (418)
482 PRK13407 bchI magnesium chelat 93.6 0.11 2.3E-06 56.2 5.5 49 157-205 5-53 (334)
483 PRK00131 aroK shikimate kinase 93.6 0.072 1.6E-06 52.1 4.0 26 181-206 4-29 (175)
484 PRK04040 adenylate kinase; Pro 93.6 0.062 1.3E-06 53.1 3.5 25 182-206 3-27 (188)
485 COG1117 PstB ABC-type phosphat 93.5 0.77 1.7E-05 45.1 10.5 27 179-205 31-57 (253)
486 PRK06995 flhF flagellar biosyn 93.5 0.34 7.4E-06 54.8 9.5 86 181-269 256-344 (484)
487 TIGR00764 lon_rel lon-related 93.5 0.21 4.7E-06 58.8 8.3 77 159-239 17-93 (608)
488 KOG3347 Predicted nucleotide k 93.5 0.13 2.9E-06 46.9 5.0 70 181-261 7-78 (176)
489 cd02024 NRK1 Nicotinamide ribo 93.5 0.06 1.3E-06 52.9 3.1 23 183-205 1-23 (187)
490 cd03217 ABC_FeS_Assembly ABC-t 93.5 0.3 6.6E-06 48.9 8.3 115 181-299 26-168 (200)
491 PRK10751 molybdopterin-guanine 93.4 0.077 1.7E-06 51.2 3.7 27 180-206 5-31 (173)
492 COG0467 RAD55 RecA-superfamily 93.4 0.2 4.3E-06 52.6 7.2 52 179-234 21-72 (260)
493 PRK06217 hypothetical protein; 93.4 0.071 1.5E-06 52.6 3.6 24 183-206 3-26 (183)
494 PRK05973 replicative DNA helic 93.4 0.51 1.1E-05 48.2 9.7 49 180-232 63-111 (237)
495 TIGR02322 phosphon_PhnN phosph 93.4 0.072 1.6E-06 52.4 3.6 25 182-206 2-26 (179)
496 PF00625 Guanylate_kin: Guanyl 93.4 0.12 2.7E-06 50.9 5.3 37 181-219 2-38 (183)
497 PF13481 AAA_25: AAA domain; P 93.4 0.27 5.8E-06 49.0 7.8 87 182-270 33-152 (193)
498 TIGR02329 propionate_PrpR prop 93.4 0.43 9.3E-06 55.1 10.3 47 159-205 211-259 (526)
499 cd01136 ATPase_flagellum-secre 93.4 0.32 7E-06 52.1 8.6 87 181-271 69-171 (326)
500 PRK03846 adenylylsulfate kinas 93.4 0.23 5.1E-06 49.7 7.3 28 179-206 22-49 (198)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-96 Score=869.07 Aligned_cols=819 Identities=25% Similarity=0.378 Sum_probs=625.0
Q ss_pred ccccchhhcccchhhHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHH
Q 045843 14 GSLVGPAVEGGTGILHCLKRKYLYVKNMSKNLRNLEREEKYLCDEEADVKTRLERNKLKMEKSRRCETWLNEVERMKDEI 93 (913)
Q Consensus 14 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~l~~~~~~~ 93 (913)
++.++..++ ++++.+.+++..+.+.++.+..|++++..|+.++.+ ++.++.....++.|.+.+++++|++
T Consensus 2 ~~~~s~~~~---~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~~~~~~~~~~~e~~~~~~~~~ 71 (889)
T KOG4658|consen 2 GACVSFGVE---KLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKRDDLERRVNWEEDVGDLVYLA 71 (889)
T ss_pred CeEEEEehh---hHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhcchHHHHHHHHHHHHHHHHHH
Confidence 456666666 889999999999999999999999999999998665 4455667778899999999999999
Q ss_pred HHHHHhhhhccccc--------------------cCCCCCcchhhhhHHHHHHHHHHHHHHHhhccchhhc-ccCCCccc
Q 045843 94 ETLKSSYSSTHKFL--------------------CGICPFPSLLQLGKQIVKLTAEVVSLRKQIGQIAIMV-EKAPVPVI 152 (913)
Q Consensus 94 ed~ld~~~~~~~~~--------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 152 (913)
+|+++.|..+.... .+.......+.+++++.+.++.++....++.+..+.. ..++....
T Consensus 72 e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e 151 (889)
T KOG4658|consen 72 EDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVE 151 (889)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcc
Confidence 99999886654321 1111233445566777777777777766655544433 22222333
Q ss_pred ccccCccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhc-ccCCCceEEEEEeCCCCCHHHHHHH
Q 045843 153 KKHAKKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIG-ESRQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 153 ~~~~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
..|..+... ||.+..++++.+.|.+.+..+++|+||||+||||||++++|+.. ++.+|+.++||+||+.++..+++++
T Consensus 152 ~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~ 230 (889)
T KOG4658|consen 152 TRPIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQT 230 (889)
T ss_pred cCCCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHH
Confidence 444444444 89999999999999888779999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHccCCccC---CChHHHHHHHHHHHccCCeEEEEeCCCCccccccccCC--CCCCCceEEEEeechhhhhc---CCc
Q 045843 232 LLKRLDLRAED---HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDIGIH--DEHKNGKVVFACIFRNICGQ---IDE 303 (913)
Q Consensus 232 i~~~l~~~~~~---~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~--~~~~~s~iivTTR~~~v~~~---~~~ 303 (913)
|++.++..... ...++.+..|.+.|++|||+|||||||+..+|+.++.| ...+||||++|||++.||.. ...
T Consensus 231 Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~ 310 (889)
T KOG4658|consen 231 ILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY 310 (889)
T ss_pred HHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc
Confidence 99999875543 34578999999999999999999999999999999876 56788999999999999998 567
Q ss_pred eEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHHHHhhcCCC-CCC
Q 045843 304 EVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDMLSQLRSPS-MAP 381 (913)
Q Consensus 304 ~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~-~~~ 381 (913)
.+++++|+.+|||.||.+.+|.. ....+.++++|++|+++|+|+|||++++|++|+.|.++++|+++.+.+.+ . ..+
T Consensus 311 ~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s-~~~~~ 389 (889)
T KOG4658|consen 311 PIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS-SLAAD 389 (889)
T ss_pred cccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc-cccCC
Confidence 89999999999999999999988 55667799999999999999999999999999999999999999999877 5 344
Q ss_pred CCch-HHHHHHHHHhccCCchhHHHHhhhhccccCCccccHHHHHHHHHhcCchhhhcchHHHHHHHHHHHHHHHHhccc
Q 045843 382 KQEL-EEVYKSFKLVCDKLPSDKQLCLLYWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEARDRGQSILDEFVKKSLL 460 (913)
Q Consensus 382 ~~~~-~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll 460 (913)
.+++ +.+++++++||++||+++|.||+|||+||+||.|+++.||.+||||||+.+...+..+++.|+.|+++|++++|+
T Consensus 390 ~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll 469 (889)
T KOG4658|consen 390 FSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLL 469 (889)
T ss_pred CCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHH
Confidence 4454 789999999999999889999999999999999999999999999999998767899999999999999999999
Q ss_pred ccCC---CccccchhHHHHHHHHHHhcccCC-cceEEEeccccc----CHHhhhhhceeeeccccccCCCCCCCCCceeE
Q 045843 461 EKGR---KASHYKMFEHFQRAALRIANHDEN-SFKILVKEEEKI----SEEEWEVANRISLIRMCLSTLPKRPKCCRILT 532 (913)
Q Consensus 461 ~~~~---~~~~~~mHdlv~~~a~~i~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~ 532 (913)
+... +..+|+|||+||++|.++|++.+. .++.++..+.+. ....|...|++++++|.+..++....+++|++
T Consensus 470 ~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~t 549 (889)
T KOG4658|consen 470 IEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRT 549 (889)
T ss_pred hhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccce
Confidence 9876 457899999999999999995443 256666654222 45677899999999999999999999999999
Q ss_pred EeeccCc--cccCchHHHhcCCcccEEeccCC-cccccCccccCccCcceeecCCccCccccChhhhccccCCEEecCCC
Q 045843 533 LLLQESS--LAELPASFFGYMCSLQLLDLHDT-KIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEILDLSHT 609 (913)
Q Consensus 533 L~l~~~~--l~~l~~~~f~~l~~Lr~LdLs~~-~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~ 609 (913)
|.+.+|. +..++..+|..++.|+||||++| .+..||++|++|.|||||+|++ +.+..+|.++++|++|.||++..+
T Consensus 550 Lll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 550 LLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred EEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccc
Confidence 9999995 88899999999999999999976 5779999999999999999999 899999999999999999999998
Q ss_pred cCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecCCCCC
Q 045843 610 GICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFADGEGF 687 (913)
Q Consensus 610 ~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l 687 (913)
.....+.++ .|. +|++|.++...... ....+.++..+
T Consensus 629 ~~l~~~~~i~~~L~-------~Lr~L~l~~s~~~~----------------------------------~~~~l~el~~L 667 (889)
T KOG4658|consen 629 GRLESIPGILLELQ-------SLRVLRLPRSALSN----------------------------------DKLLLKELENL 667 (889)
T ss_pred cccccccchhhhcc-------cccEEEeecccccc----------------------------------chhhHHhhhcc
Confidence 873333444 688 99999887763110 01111222222
Q ss_pred chhhHHHhcccccccccccccccccCccccCcccCc----ceEEecccCCceEeecCCCcccccccCCceEecccccccc
Q 045843 688 PDAVVKILEQACAFELIGHRTAANLSDFGANKFGDV----EACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLM 763 (913)
Q Consensus 688 ~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L----~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~ 763 (913)
+.|+.+++. .....-+... ..+..| +.+.+.+|... ..+.. +. .+.+|+.|.+.+|....
T Consensus 668 --e~L~~ls~~-------~~s~~~~e~l--~~~~~L~~~~~~l~~~~~~~~-~~~~~-~~---~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 668 --EHLENLSIT-------ISSVLLLEDL--LGMTRLRSLLQSLSIEGCSKR-TLISS-LG---SLGNLEELSILDCGISE 731 (889)
T ss_pred --cchhhheee-------cchhHhHhhh--hhhHHHHHHhHhhhhcccccc-eeecc-cc---cccCcceEEEEcCCCch
Confidence 222222222 0000000000 111111 11221111111 11111 22 34555555554444432
Q ss_pred --hhccccccccc-cccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCc-----ccCCCCCCccce
Q 045843 764 --HIWKGSIQSGS-LIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGS-----AVDSRAFPKLKS 835 (913)
Q Consensus 764 --~~~~~~~~~~~-l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~-----~~~~~~f~~L~~ 835 (913)
..|........ |++|..+.+.+|..++++ .+..-.|+|+.|.+.+|..++++.+... ......|+++..
T Consensus 732 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l---~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 732 IVIEWEESLIVLLCFPNLSKVSILNCHMLRDL---TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred hhcccccccchhhhHHHHHHHHhhcccccccc---chhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 11221111112 556666666677666666 4555566777777777766665553211 111335566666
Q ss_pred e-ecccccccccccccCccCCCCccEEeeecCcccccccCCCc----CCCCcceeeecccccccCCCCchhhhccc
Q 045843 836 F-QLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPSTIE----NASKLRGIQCNQAWWSSLVWPNDHVRDHF 906 (913)
Q Consensus 836 L-~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~----~l~~L~~l~~~~~~~~~l~w~~~~~~~~~ 906 (913)
+ .+.+.+.+.++.. ....++.|+.+.+..||+++.+|.... ++.......-+.+|...++|.+..++.+|
T Consensus 809 l~~~~~l~~l~~i~~-~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 809 LRMLCSLGGLPQLYW-LPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ceeeecCCCCceeEe-cccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 6 4666677776666 555677799999999999999997533 33344555566688999999999998887
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.3e-62 Score=612.22 Aligned_cols=444 Identities=21% Similarity=0.267 Sum_probs=303.3
Q ss_pred ccccccchHHHHHHHHHHHh--cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEe---CCC----------
Q 045843 158 KMEEVPSLNKHLKMLQECLR--NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTV---NSE---------- 222 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~---------- 222 (913)
...++|||+..++++..+|. ..+.++|+|+||||+||||||+.+|+... .+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 44567899999999999883 45788999999999999999999999876 88998888742 211
Q ss_pred -CC-HHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccccccccCC--CCCCCceEEEEeechhhh
Q 045843 223 -GN-IRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEINLRDIGIH--DEHKNGKVVFACIFRNIC 298 (913)
Q Consensus 223 -~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~--~~~~~s~iivTTR~~~v~ 298 (913)
++ ...++++++.++...... ... ....+++.+++||+||||||||+...|+.+... ..+.||+||||||+..++
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~-~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl 337 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDI-KIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFL 337 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCc-ccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHH
Confidence 11 123455555554322211 111 124577889999999999999999888887543 346899999999999998
Q ss_pred hc--CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHHHHhhcC
Q 045843 299 GQ--IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDMLSQLRS 376 (913)
Q Consensus 299 ~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~ 376 (913)
.. ...+|+++.+++++||+||+++||.......++++++++|+++|+|+|||++++|++|+++ +..+|+.++++++.
T Consensus 338 ~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~ 416 (1153)
T PLN03210 338 RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN 416 (1153)
T ss_pred HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence 75 6789999999999999999999998744455688999999999999999999999999987 88999999999875
Q ss_pred CCCCCCCchHHHHHHHHHhccCCchh-HHHHhhhhccccCCccccHHHHHHHHHhcCchhhhcchHHHHHHHHHHHHHHH
Q 045843 377 PSMAPKQELEEVYKSFKLVCDKLPSD-KQLCLLYWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEARDRGQSILDEFV 455 (913)
Q Consensus 377 ~~~~~~~~~~~i~~~l~~sy~~L~~~-~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~~L~ 455 (913)
... .+|..+|++||+.|+++ .|.||+++|.||.+..++ .+..|++.+.+.. +.-++.|+
T Consensus 417 -~~~-----~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~ 476 (1153)
T PLN03210 417 -GLD-----GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLV 476 (1153)
T ss_pred -Ccc-----HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHH
Confidence 332 57999999999999875 999999999999987554 4777888765532 12388999
Q ss_pred HhcccccCCCccccchhHHHHHHHHHHhcccCC---cceEEEeccccc---------------------------CH---
Q 045843 456 KKSLLEKGRKASHYKMFEHFQRAALRIANHDEN---SFKILVKEEEKI---------------------------SE--- 502 (913)
Q Consensus 456 ~~~ll~~~~~~~~~~mHdlv~~~a~~i~~~~~~---~~~~~~~~~~~~---------------------------~~--- 502 (913)
+++|++... ..+.|||++|++|+++++++.. ...+++...+.. ..
T Consensus 477 ~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF 554 (1153)
T PLN03210 477 DKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAF 554 (1153)
T ss_pred hcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHH
Confidence 999998754 4699999999999999876421 123333221000 00
Q ss_pred Hhhhhhceeeecccccc-------CCCCC-CC-CCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccC
Q 045843 503 EEWEVANRISLIRMCLS-------TLPKR-PK-CCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISS 573 (913)
Q Consensus 503 ~~~~~~~~Lsl~~~~~~-------~l~~~-~~-~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~ 573 (913)
...++++.|.+..+... .+|.. .. .++||.|.+.++.+..+|..+ .+.+|+.|++++|.+..+|..+..
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcccccccccccc
Confidence 01112222222221100 11211 11 134555555555555555442 245555555555555555555555
Q ss_pred ccCcceeecCCccCccccChhhhccccCCEEecCCCcC-CcCCCcc-ccccccccccccceeecccc
Q 045843 574 LTNLKALFLNNCCQLMRLPAEVGDLHNLEILDLSHTGI-CCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 574 L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~-~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+++|++|+|++|+.+..+|. ++.+++|++|++++|.. ..+|..+ .++ +|+.|++..|
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~-------~L~~L~L~~c 691 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN-------KLEDLDMSRC 691 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccC-------CCCEEeCCCC
Confidence 55555555555445555552 55555555555555543 4555544 444 5555555443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.2e-44 Score=387.31 Aligned_cols=272 Identities=27% Similarity=0.507 Sum_probs=227.6
Q ss_pred hHHHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc-
Q 045843 165 LNKHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE- 241 (913)
Q Consensus 165 r~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~- 241 (913)
||.++++|.++|.+ .+.++|+|+||||+||||||+.++++..++.+|+.++|+.++...+...+++.|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999977 789999999999999999999999997777999999999999999999999999999988742
Q ss_pred ---CCChHHHHHHHHHHHccCCeEEEEeCCCCccccccccCC--CCCCCceEEEEeechhhhhc---CCceEEcccCChH
Q 045843 242 ---DHNIDQRADMISEELKDKSYVLFLDEVSTEINLRDIGIH--DEHKNGKVVFACIFRNICGQ---IDEEVNVQRLSGK 313 (913)
Q Consensus 242 ---~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~--~~~~~s~iivTTR~~~v~~~---~~~~~~l~~L~~~ 313 (913)
..+.++....+++.|+++++||||||||+...|+.+..+ ....|++||||||+..++.. ....+++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 367788999999999999999999999999999877543 55679999999999999887 2679999999999
Q ss_pred HHHHHHHHHhCCCC-CCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCCC-chHHHHHH
Q 045843 314 DAQKLFWETVGVQL-KDCRDIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDMLSQLRSPSMAPKQ-ELEEVYKS 391 (913)
Q Consensus 314 ~~~~Lf~~~~~~~~-~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~-~~~~i~~~ 391 (913)
||++||.+.++... ...+.+++.+++|+++|+|+|||++++|++|+.+.+..+|+.+++.+.. ...+.. ....++.+
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~-~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELEN-SLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHH-CHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 99999999998764 3456677899999999999999999999999776678999999988765 432232 24789999
Q ss_pred HHHhccCCchhHHHHhhhhccccCCccccHHHHHHHHHhcCchhhh
Q 045843 392 FKLVCDKLPSDKQLCLLYWAIFPVGYELHEDYIIECWRAEQFFACL 437 (913)
Q Consensus 392 l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~ 437 (913)
+.+||+.||+++|.||+|||+||+++.|+++.|+++|++||||...
T Consensus 240 l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1.6e-20 Score=236.47 Aligned_cols=161 Identities=15% Similarity=0.039 Sum_probs=96.1
Q ss_pred cCcccCcceEEecccCCceEeecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchH
Q 045843 717 ANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEE 796 (913)
Q Consensus 717 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~ 796 (913)
+.++++|+.|++++|... ...+..+. .+++|+.|++.++.-.... +...+.+++|+.|+|++|. +....| .
T Consensus 304 ~~~l~~L~~L~l~~n~~~-~~~~~~~~---~l~~L~~L~L~~n~l~~~~---p~~l~~~~~L~~L~Ls~n~-l~~~~p-~ 374 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFT-GKIPVALT---SLPRLQVLQLWSNKFSGEI---PKNLGKHNNLTVLDLSTNN-LTGEIP-E 374 (968)
T ss_pred HcCCCCCcEEECCCCccC-CcCChhHh---cCCCCCEEECcCCCCcCcC---ChHHhCCCCCcEEECCCCe-eEeeCC-h
Confidence 455666777776664433 22222233 4666777776543321110 1111346667777777643 332222 5
Q ss_pred HHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccCCC
Q 045843 797 IIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPSTI 876 (913)
Q Consensus 797 ~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~ 876 (913)
.+..+++|+.|++++|.....++. ....+++|+.|++.+|.....++. .+..+++|+.|++++|.-...+|..+
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~-----~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPK-----SLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCH-----HHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhh
Confidence 566667777777776665444443 455678888888888765445554 56677888888888876666666666
Q ss_pred cCCCCcceeeeccccc
Q 045843 877 ENASKLRGIQCNQAWW 892 (913)
Q Consensus 877 ~~l~~L~~l~~~~~~~ 892 (913)
..+++|+.++...+.+
T Consensus 449 ~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 449 WDMPSLQMLSLARNKF 464 (968)
T ss_pred ccCCCCcEEECcCcee
Confidence 6788888888776654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=3.3e-20 Score=233.51 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=42.6
Q ss_pred CCccceeecccccccccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeeccccccc
Q 045843 830 FPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSS 894 (913)
Q Consensus 830 f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~ 894 (913)
.++|+.|++++|.....++. .+..+++|+.|++++|.....+|..+.++++|++++++.+...+
T Consensus 474 ~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 537 (968)
T PLN00113 474 SKRLENLDLSRNQFSGAVPR-KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537 (968)
T ss_pred cccceEEECcCCccCCccCh-hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccc
Confidence 35566666666543334443 45567788888888876666777777788888888887765543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.8e-22 Score=213.94 Aligned_cols=315 Identities=19% Similarity=0.309 Sum_probs=222.4
Q ss_pred HhhhhhceeeeccccccCCCCC-CCCCceeEEeeccCcc--ccCchHHHhcCCcccEEeccCCcccccCccccCccCcce
Q 045843 503 EEWEVANRISLIRMCLSTLPKR-PKCCRILTLLLQESSL--AELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKA 579 (913)
Q Consensus 503 ~~~~~~~~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l--~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~ 579 (913)
....++.||++.+|.+.++-.. .+++.||++++..|++ +++|+++| .+..|.+||||+|++++.|..+..-.|+-+
T Consensus 52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 4456889999999988766544 7889999999999955 45899985 599999999999999999999999999999
Q ss_pred eecCCccCccccChh-hhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccccccccCCCCCccceeeeec
Q 045843 580 LFLNNCCQLMRLPAE-VGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVG 657 (913)
Q Consensus 580 L~L~~c~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~ 657 (913)
|+|++ ++|..+|.+ +-+|+.|-+|||++|.+..+|+.+ .|. .|++|.++.+.
T Consensus 131 LNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~-------~LqtL~Ls~NP------------------ 184 (1255)
T KOG0444|consen 131 LNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS-------MLQTLKLSNNP------------------ 184 (1255)
T ss_pred EEccc-CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh-------hhhhhhcCCCh------------------
Confidence 99999 789999987 568999999999999999999999 888 89998887761
Q ss_pred cccCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEe
Q 045843 658 YNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISI 737 (913)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 737 (913)
+....+..+..+ +.|..|.++.. .....++|.. +..+.+|..++++. +++ ..
T Consensus 185 ------------------L~hfQLrQLPsm--tsL~vLhms~T-----qRTl~N~Pts-ld~l~NL~dvDlS~-N~L-p~ 236 (1255)
T KOG0444|consen 185 ------------------LNHFQLRQLPSM--TSLSVLHMSNT-----QRTLDNIPTS-LDDLHNLRDVDLSE-NNL-PI 236 (1255)
T ss_pred ------------------hhHHHHhcCccc--hhhhhhhcccc-----cchhhcCCCc-hhhhhhhhhccccc-cCC-Cc
Confidence 111222333333 34444444311 1122334443 56677888888875 444 33
Q ss_pred ecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCch-hH
Q 045843 738 IDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKE-ME 816 (913)
Q Consensus 738 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~-l~ 816 (913)
++..+. .+++|+.|+|++.. ++.. ....+...+|+.|+|+. ++++.+ |..+..|++|+.|.+.+|.. .+
T Consensus 237 vPecly---~l~~LrrLNLS~N~-iteL---~~~~~~W~~lEtLNlSr-NQLt~L--P~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 237 VPECLY---KLRNLRRLNLSGNK-ITEL---NMTEGEWENLETLNLSR-NQLTVL--PDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred chHHHh---hhhhhheeccCcCc-eeee---eccHHHHhhhhhhcccc-chhccc--hHHHhhhHHHHHHHhccCccccc
Confidence 333344 57788888886532 1111 01112456788888887 677777 36777888888888866542 24
Q ss_pred hhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeeccc
Q 045843 817 EIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQA 890 (913)
Q Consensus 817 ~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~ 890 (913)
.||+ +++.+.+|+.+...++ +|+-.|. ....|+.|++|.+.. +.|-+||.+|..++.|..++...+
T Consensus 307 GiPS-----GIGKL~~Levf~aanN-~LElVPE-glcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 307 GIPS-----GIGKLIQLEVFHAANN-KLELVPE-GLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred CCcc-----chhhhhhhHHHHhhcc-ccccCch-hhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCC
Confidence 4443 6667777777777664 5666665 667778888888754 577788887777788887777653
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=1.9e-19 Score=191.74 Aligned_cols=337 Identities=19% Similarity=0.203 Sum_probs=192.5
Q ss_pred hhhhceeeeccccccCCCCC-CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeec
Q 045843 505 WEVANRISLIRMCLSTLPKR-PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFL 582 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L 582 (913)
.++++.+++-+|.+..+|.+ ....+|..|+|.+|.+..+....+..++.||.||||.|.|+.+|. ++..=.++++|+|
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 35777888888888889887 455669999999998888888888889999999999999998874 4666688999999
Q ss_pred CCccCccccC-hhhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccccccccC--CCCCccceeeeec
Q 045843 583 NNCCQLMRLP-AEVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWN--GNSNFRSFSILVG 657 (913)
Q Consensus 583 ~~c~~l~~lP-~~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~--~~~~l~~l~~l~~ 657 (913)
++ +.++.+- ..|..|.+|.+|.|+.|.+..+|.-+ +|+ +|+.|++..+...... ....|.+++.+.-
T Consensus 181 a~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~-------~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 181 AS-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLP-------KLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred cc-ccccccccccccccchheeeecccCcccccCHHHhhhcc-------hhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 99 6777664 34788889999999999999898876 588 8888887766322110 0111111111100
Q ss_pred cccCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEe
Q 045843 658 YNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISI 737 (913)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 737 (913)
..+. ...+.-.-+-.+ ..++.|.+. .+.+..+..-++-+++.|+.|+++.+ .++.+
T Consensus 253 qrN~--------------I~kL~DG~Fy~l--~kme~l~L~-------~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~ri 308 (873)
T KOG4194|consen 253 QRND--------------ISKLDDGAFYGL--EKMEHLNLE-------TNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRI 308 (873)
T ss_pred hhcC--------------cccccCcceeee--cccceeecc-------cchhhhhhcccccccchhhhhccchh-hhhee
Confidence 0000 000000000011 112222222 23333333333445566666666652 22222
Q ss_pred ecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHh
Q 045843 738 IDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEE 817 (913)
Q Consensus 738 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~ 817 (913)
-...|. .+++|+.|+|++. .++..-.+ ....+..|+.|.|++ +.+.++ ....+.++.+|+.|++++|...-.
T Consensus 309 h~d~Ws---ftqkL~~LdLs~N-~i~~l~~~--sf~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 309 HIDSWS---FTQKLKELDLSSN-RITRLDEG--SFRVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred ecchhh---hcccceeEecccc-ccccCChh--HHHHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCeEEEE
Confidence 222244 4566666666431 11111111 112355666666666 555555 234556666666666665542221
Q ss_pred hhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccc-cCCCcCCCCcceee
Q 045843 818 IIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNF-PSTIENASKLRGIQ 886 (913)
Q Consensus 818 i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~l-P~~~~~l~~L~~l~ 886 (913)
| . .....+.++|+|+.|.+.++ ++++|+...+..+++|+.|++.+++ +.++ |..+..+ .|+++.
T Consensus 381 I-E-Daa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 381 I-E-DAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELV 445 (873)
T ss_pred E-e-cchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc-ceeecccccccc-hhhhhh
Confidence 1 1 11224455677777777764 5666666555666777777776643 3333 4444444 555443
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=2.2e-18 Score=216.95 Aligned_cols=124 Identities=27% Similarity=0.353 Sum_probs=111.9
Q ss_pred hhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCc-ccccCccccCccCcceeecCC
Q 045843 506 EVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTK-IKLLPSSISSLTNLKALFLNN 584 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~-i~~lp~~i~~L~~L~~L~L~~ 584 (913)
.++|.|.+.++.+..+|....+.+|+.|++.+|.+..++..+ ..+++|++|+|+++. +..+|. ++.+++|++|+|++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 468999999999999998888899999999999998888775 889999999999875 667875 88999999999999
Q ss_pred ccCccccChhhhccccCCEEecCCCcC-CcCCCccccccccccccccceeecccc
Q 045843 585 CCQLMRLPAEVGDLHNLEILDLSHTGI-CCLPSEIDLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 585 c~~l~~lP~~i~~L~~L~~L~L~~~~~-~~lp~~i~L~~L~~~~~~L~~L~l~~~ 638 (913)
|+.+..+|.++++|++|++|++++|.. ..+|..++++ +|+.|++.+|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~-------sL~~L~Lsgc 714 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLK-------SLYRLNLSGC 714 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCC-------CCCEEeCCCC
Confidence 999999999999999999999999865 8899888888 8888888877
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=1.9e-19 Score=191.78 Aligned_cols=325 Identities=17% Similarity=0.215 Sum_probs=185.1
Q ss_pred hhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeecC
Q 045843 507 VANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFLN 583 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L~ 583 (913)
++.+|++.+|.+.++... .-++.||+|+|+.|.+..++...|..-.++++|+|++|.|+.+- ..|.+|.+|-+|.|+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 455666666665554433 44555666666666666666555555556666666666666553 345566666666666
Q ss_pred CccCccccChh-hhccccCCEEecCCCcCCcCCCc-c-ccccccccccccceeecccccccccCCCCCccceeeeecccc
Q 045843 584 NCCQLMRLPAE-VGDLHNLEILDLSHTGICCLPSE-I-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQ 660 (913)
Q Consensus 584 ~c~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~-i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~ 660 (913)
+ +.++.+|.. |++|++|+.|+|..|.++.+-.. + .|. +|+.|.+..+....... + .+.+...
T Consensus 206 r-NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~-------Sl~nlklqrN~I~kL~D-G------~Fy~l~k 270 (873)
T KOG4194|consen 206 R-NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP-------SLQNLKLQRNDISKLDD-G------AFYGLEK 270 (873)
T ss_pred c-CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCch-------hhhhhhhhhcCcccccC-c------ceeeecc
Confidence 6 455555543 44466666666666655322111 1 333 44544444442211110 0 0000110
Q ss_pred CCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecC
Q 045843 661 RSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDG 740 (913)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 740 (913)
.. .+++.... .....-..+-++ ..|+.|.++ ++.+..+...+.+..++|++|+|+. +.+..+.+.
T Consensus 271 me--~l~L~~N~---l~~vn~g~lfgL--t~L~~L~lS-------~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~ 335 (873)
T KOG4194|consen 271 ME--HLNLETNR---LQAVNEGWLFGL--TSLEQLDLS-------YNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEG 335 (873)
T ss_pred cc--eeecccch---hhhhhccccccc--chhhhhccc-------hhhhheeecchhhhcccceeEeccc-cccccCChh
Confidence 00 00010000 111111233445 677777777 6777765544447779999999998 445344444
Q ss_pred CCcccccccCCceEecccccccchhccccccccccccccEEeeccCc---cccccCchHHHhhcCCCcEEEEccCchhHh
Q 045843 741 NLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCH---GMKTLFSEEIIFQLNQIQYLQVEDCKEMEE 817 (913)
Q Consensus 741 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~---~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~ 817 (913)
.+. .+..|+.|.|++.. +...-.+ ....+.+|++|+|+++. -+++- ...+.+|++|+.|.+.+|. ++.
T Consensus 336 sf~---~L~~Le~LnLs~Ns-i~~l~e~--af~~lssL~~LdLr~N~ls~~IEDa--a~~f~gl~~LrkL~l~gNq-lk~ 406 (873)
T KOG4194|consen 336 SFR---VLSQLEELNLSHNS-IDHLAEG--AFVGLSSLHKLDLRSNELSWCIEDA--AVAFNGLPSLRKLRLTGNQ-LKS 406 (873)
T ss_pred HHH---HHHHhhhhcccccc-hHHHHhh--HHHHhhhhhhhcCcCCeEEEEEecc--hhhhccchhhhheeecCce-eee
Confidence 455 67889999996532 2222111 12368999999999832 23332 2567889999999998875 777
Q ss_pred hhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEee------ecCcccccccCCCc
Q 045843 818 IIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITI------KACDELRNFPSTIE 877 (913)
Q Consensus 818 i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i------~~C~~L~~lP~~~~ 877 (913)
|+. -.+.+|+.|+.|+|.+++ +.+|-.+.+..+ .|++|.+ .+| .|+=++.++.
T Consensus 407 I~k----rAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~nSssflCDC-ql~Wl~qWl~ 465 (873)
T KOG4194|consen 407 IPK----RAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMNSSSFLCDC-QLKWLAQWLY 465 (873)
T ss_pred cch----hhhccCcccceecCCCCc-ceeecccccccc-hhhhhhhcccceEEec-cHHHHHHHHH
Confidence 763 367789999999999975 556655455556 7887765 345 4555666543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=1.2e-19 Score=194.08 Aligned_cols=316 Identities=17% Similarity=0.208 Sum_probs=228.5
Q ss_pred HHhhhhhceeeeccccccCCCCC-CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccc--ccCccccCccCcc
Q 045843 502 EEEWEVANRISLIRMCLSTLPKR-PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIK--LLPSSISSLTNLK 578 (913)
Q Consensus 502 ~~~~~~~~~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~--~lp~~i~~L~~L~ 578 (913)
......++.|.+....+..+|.. ..|.+|..|.+.+|++..+.... ..++.||.+++.+|+++ -+|..|..|..|.
T Consensus 28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhh-ccchhhHHHhhhccccccCCCCchhcccccce
Confidence 34445666677766667777755 56778888888888877776664 77888888888888876 6788888888888
Q ss_pred eeecCCccCccccChhhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeee
Q 045843 579 ALFLNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILV 656 (913)
Q Consensus 579 ~L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~ 656 (913)
.|+|++ +.+++.|..+.+-+++-.|+|++|++..||..+ +|+ .|-.|+++.+
T Consensus 107 ~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt-------DLLfLDLS~N------------------ 160 (1255)
T KOG0444|consen 107 ILDLSH-NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT-------DLLFLDLSNN------------------ 160 (1255)
T ss_pred eeecch-hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH-------hHhhhccccc------------------
Confidence 888888 788888888888888888888888888888877 777 7766666654
Q ss_pred ccccCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccc--cCccccCcccCcceEEecccCCc
Q 045843 657 GYNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAAN--LSDFGANKFGDVEACIVEDCNEM 734 (913)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~--l~~~~~~~l~~L~~L~l~~~~~~ 734 (913)
.+..+| .+.+.|...+.+.+.++. +.. +.. +..+++|++|.+++.+..
T Consensus 161 --------------------------rLe~LP-PQ~RRL~~LqtL~Ls~NP-L~hfQLrQ--LPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 161 --------------------------RLEMLP-PQIRRLSMLQTLKLSNNP-LNHFQLRQ--LPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred --------------------------hhhhcC-HHHHHHhhhhhhhcCCCh-hhHHHHhc--Cccchhhhhhhcccccch
Confidence 334455 455555555555554432 211 222 245577888888875443
Q ss_pred eEeecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCch
Q 045843 735 ISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKE 814 (913)
Q Consensus 735 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~ 814 (913)
-.-++.++. .+.+|..++++. .+++.. |-....+++|+.|+|++ +.++.+- ...+.-.+|+.|+++.|.
T Consensus 211 l~N~Ptsld---~l~NL~dvDlS~-N~Lp~v---Pecly~l~~LrrLNLS~-N~iteL~--~~~~~W~~lEtLNlSrNQ- 279 (1255)
T KOG0444|consen 211 LDNIPTSLD---DLHNLRDVDLSE-NNLPIV---PECLYKLRNLRRLNLSG-NKITELN--MTEGEWENLETLNLSRNQ- 279 (1255)
T ss_pred hhcCCCchh---hhhhhhhccccc-cCCCcc---hHHHhhhhhhheeccCc-Cceeeee--ccHHHHhhhhhhccccch-
Confidence 233333344 678888888854 222211 11223689999999999 7788772 456677899999999865
Q ss_pred hHhhhcCCcccCCCCCCccceeeccccc-ccccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeeccccc
Q 045843 815 MEEIIEAGSAVDSRAFPKLKSFQLINLP-KLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWW 892 (913)
Q Consensus 815 l~~i~~~~~~~~~~~f~~L~~L~l~~~~-~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~ 892 (913)
++.+|+ ....+++|+.|.+.++. ..+.||. +++.+.+|+.+...+ ++|.-+|.+++.|..|+.+..+.+-+
T Consensus 280 Lt~LP~-----avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 280 LTVLPD-----AVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hccchH-----HHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccce
Confidence 677775 77789999999988764 3567777 788899999999998 69999999999999999988877543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=1e-17 Score=171.34 Aligned_cols=334 Identities=21% Similarity=0.253 Sum_probs=198.8
Q ss_pred HhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeec
Q 045843 503 EEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFL 582 (913)
Q Consensus 503 ~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L 582 (913)
....++..++++.|.+..+|.+.+|+.|..|++..|.+.-+|....+.+.+|.+|||.+|+++++|..++.|.+|.+||+
T Consensus 203 g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDL 282 (565)
T ss_pred cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcc
Confidence 34457788899999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred CCccCccccChhhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeecccc
Q 045843 583 NNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQ 660 (913)
Q Consensus 583 ~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~ 660 (913)
++ +.++.+|.++|+| +|+.|-+.||.+..+-.++ +-+. .-|++|+-..... |.+.
T Consensus 283 SN-N~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~-----~vLKyLrs~~~~d----------------glS~ 339 (565)
T KOG0472|consen 283 SN-NDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQ-----EVLKYLRSKIKDD----------------GLSQ 339 (565)
T ss_pred cC-CccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHH-----HHHHHHHHhhccC----------------CCCC
Confidence 99 7899999999999 9999999999886554444 1000 0122332211100 0000
Q ss_pred CCCCCc-cccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcc--cCcceEEecccCCceEe
Q 045843 661 RSSPHM-EFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKF--GDVEACIVEDCNEMISI 737 (913)
Q Consensus 661 ~~~~~~-~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l--~~L~~L~l~~~~~~~~~ 737 (913)
...+.. ..+ .......+...+ ...+.|.+. ....+.+|+-.|..- .-....+++.+ .+.++
T Consensus 340 se~~~e~~~t------~~~~~~~~~~~~--i~tkiL~~s-------~~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~el 403 (565)
T KOG0472|consen 340 SEGGTETAMT------LPSESFPDIYAI--ITTKILDVS-------DKQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCEL 403 (565)
T ss_pred CcccccccCC------CCCCcccchhhh--hhhhhhccc-------ccccccCCHHHHHHhhhcceEEEecccc-hHhhh
Confidence 000000 000 000011111111 223333332 222333333211110 11334444442 22122
Q ss_pred ecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHh
Q 045843 738 IDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEE 817 (913)
Q Consensus 738 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~ 817 (913)
+.. +. .+..+.+.-+.....+ .|. +.....+++|..|+|++ +-+-++ | .-++++-.|+.|+|+.+ ....
T Consensus 404 Pk~-L~---~lkelvT~l~lsnn~i--sfv-~~~l~~l~kLt~L~L~N-N~Ln~L-P-~e~~~lv~Lq~LnlS~N-rFr~ 472 (565)
T KOG0472|consen 404 PKR-LV---ELKELVTDLVLSNNKI--SFV-PLELSQLQKLTFLDLSN-NLLNDL-P-EEMGSLVRLQTLNLSFN-RFRM 472 (565)
T ss_pred hhh-hH---HHHHHHHHHHhhcCcc--ccc-hHHHHhhhcceeeeccc-chhhhc-c-hhhhhhhhhheeccccc-cccc
Confidence 221 11 1122222111111111 121 11224688888888888 666666 2 55677777888888876 3555
Q ss_pred hhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeecccccc
Q 045843 818 IIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWS 893 (913)
Q Consensus 818 i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~ 893 (913)
+|. .......|+.+..++ ..+.+++......|.+|..|++.+ +.+..+|+.++++++|+.++...+.+.
T Consensus 473 lP~-----~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 473 LPE-----CLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred chH-----HHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence 542 222223334333333 356666654467788888888887 578888888888888888888776654
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=3.6e-16 Score=176.13 Aligned_cols=112 Identities=32% Similarity=0.440 Sum_probs=96.5
Q ss_pred hceeeeccccccCCC--CCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCc
Q 045843 508 ANRISLIRMCLSTLP--KRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNC 585 (913)
Q Consensus 508 ~~~Lsl~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c 585 (913)
+..+++..|.+-..| ...++-+|++|+++.|.+..+|..+ ..+.+|+.|+++.|.|..+|.+++++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~- 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN- 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-
Confidence 556666666655534 2245666999999999999998886 889999999999999999999999999999999998
Q ss_pred cCccccChhhhccccCCEEecCCCcCCcCCCcc-ccc
Q 045843 586 CQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLT 621 (913)
Q Consensus 586 ~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~ 621 (913)
+.+..+|.++..+++|++||++.|.+..+|..+ .++
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt 137 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLT 137 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchhHHhhh
Confidence 899999999999999999999999999999877 444
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.47 E-value=5.4e-14 Score=168.04 Aligned_cols=307 Identities=25% Similarity=0.315 Sum_probs=196.2
Q ss_pred hhceeeecccc--ccCCCC--CCCCCceeEEeeccC-ccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceee
Q 045843 507 VANRISLIRMC--LSTLPK--RPKCCRILTLLLQES-SLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALF 581 (913)
Q Consensus 507 ~~~~Lsl~~~~--~~~l~~--~~~~~~Lr~L~l~~~-~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~ 581 (913)
+++.|-+..|. +..++. +..++.||+|++++| .+.++|..+ +++-+||||+|+++.+..+|.++++|..|+||+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 68888888885 666666 578999999999999 788899887 999999999999999999999999999999999
Q ss_pred cCCccCccccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccccccccCCCCCccceeeeecccc
Q 045843 582 LNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQ 660 (913)
Q Consensus 582 L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~ 660 (913)
+..+.....+|..+..|++|++|.+.......-...+ .+. +|++|....+...+
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~-------~Le~L~~ls~~~~s------------------ 679 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELE-------NLEHLENLSITISS------------------ 679 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhh-------cccchhhheeecch------------------
Confidence 9996667777777777999999999776521000011 333 44444333221000
Q ss_pred CCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecC
Q 045843 661 RSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDG 740 (913)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 740 (913)
...+.++..+ ..|..+.+. +....+......++ +..+.+|+.|.+.+|...+.....
T Consensus 680 -----------------~~~~e~l~~~--~~L~~~~~~--l~~~~~~~~~~~~~--~~~l~~L~~L~i~~~~~~e~~~~~ 736 (889)
T KOG4658|consen 680 -----------------VLLLEDLLGM--TRLRSLLQS--LSIEGCSKRTLISS--LGSLGNLEELSILDCGISEIVIEW 736 (889)
T ss_pred -----------------hHhHhhhhhh--HHHHHHhHh--hhhcccccceeecc--cccccCcceEEEEcCCCchhhccc
Confidence 0111222222 233332222 11111111222333 377899999999998775322211
Q ss_pred C--CcccccccCCceEecccccccc-hhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHh
Q 045843 741 N--LTEGVTFQHLKKLHISHLPKLM-HIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEE 817 (913)
Q Consensus 741 ~--l~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~ 817 (913)
. ......|++|.++.+.+|.... ..|.. ..|+|+.|.+..|+.+++++ +....+..+..+.+..+..-.-
T Consensus 737 ~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~-----f~~~L~~l~l~~~~~~e~~i--~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 737 EESLIVLLCFPNLSKVSILNCHMLRDLTWLL-----FAPHLTSLSLVSCRLLEDII--PKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred ccccchhhhHHHHHHHHhhccccccccchhh-----ccCcccEEEEecccccccCC--CHHHHhhhcccEEecccccccc
Confidence 1 0000015667777776666554 34443 57899999999999999885 5666677776644433322111
Q ss_pred -hhcCCcccCCCCCCccceeeccccccccccccc---CccCCCCccEEeeecC-cccccccCC
Q 045843 818 -IIEAGSAVDSRAFPKLKSFQLINLPKLSSICHN---MSLAWPLLETITIKAC-DELRNFPST 875 (913)
Q Consensus 818 -i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~---~~~~~p~L~~L~i~~C-~~L~~lP~~ 875 (913)
... ...+||++..+.+... .++.+... ....+|.+..+.+.+| +.+..+|.+
T Consensus 810 ~~~~-----~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 810 RMLC-----SLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred eeee-----cCCCCceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCCc
Confidence 111 4455666555555543 24444431 1355889999999997 899999986
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=1.8e-13 Score=160.04 Aligned_cols=254 Identities=19% Similarity=0.171 Sum_probs=140.7
Q ss_pred hceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccC
Q 045843 508 ANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQ 587 (913)
Q Consensus 508 ~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~ 587 (913)
...|.+..+.+..+|... .++|+.|.+.+|.++.+|. .+++|++|+|++|+++.+|.. ..+|+.|++++ +.
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~-N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS-NP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC-Cc
Confidence 345666677777777642 2467888888887777764 256788888888888877753 35677788877 45
Q ss_pred ccccChhhhccccCCEEecCCCcCCcCCCccccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCcc
Q 045843 588 LMRLPAEVGDLHNLEILDLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHME 667 (913)
Q Consensus 588 l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 667 (913)
+..+|.. +.+|+.|++++|.+..+|.. ++ +|+.|++..+...
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~--p~-------~L~~LdLS~N~L~-------------------------- 315 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQLTSLPVL--PP-------GLQELSVSDNQLA-------------------------- 315 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCcccccccc--cc-------ccceeECCCCccc--------------------------
Confidence 6777653 35677778888877666642 22 6667766655111
Q ss_pred ccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCccccc
Q 045843 668 FDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVT 747 (913)
Q Consensus 668 ~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 747 (913)
.+..+| ..|+.|.+. .+.+..+|.. ..+|+.|+++++ .+..++. .
T Consensus 316 ---------------~Lp~lp-~~L~~L~Ls-------~N~L~~LP~l----p~~Lq~LdLS~N-~Ls~LP~-------l 360 (788)
T PRK15387 316 ---------------SLPALP-SELCKLWAY-------NNQLTSLPTL----PSGLQELSVSDN-QLASLPT-------L 360 (788)
T ss_pred ---------------cCCCCc-ccccccccc-------cCcccccccc----ccccceEecCCC-ccCCCCC-------C
Confidence 111111 223333332 2233333322 135667777653 3312221 2
Q ss_pred ccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCC
Q 045843 748 FQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDS 827 (913)
Q Consensus 748 ~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~ 827 (913)
+++|+.|++++. .+.... ...++|+.|+|++ +.+..+ | . ..++|+.|++++|. +..+|.
T Consensus 361 p~~L~~L~Ls~N-~L~~LP------~l~~~L~~LdLs~-N~Lt~L-P--~--l~s~L~~LdLS~N~-LssIP~------- 419 (788)
T PRK15387 361 PSELYKLWAYNN-RLTSLP------ALPSGLKELIVSG-NRLTSL-P--V--LPSELKELMVSGNR-LTSLPM------- 419 (788)
T ss_pred Ccccceehhhcc-ccccCc------ccccccceEEecC-CcccCC-C--C--cccCCCEEEccCCc-CCCCCc-------
Confidence 345666666432 121110 0234577777766 445544 1 1 13567777777665 444432
Q ss_pred CCCCccceeecccccccccccccCccCCCCccEEeeecCc
Q 045843 828 RAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACD 867 (913)
Q Consensus 828 ~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~ 867 (913)
.+.+|+.|+++++ .++.+|. .+..+++|+.|++++++
T Consensus 420 -l~~~L~~L~Ls~N-qLt~LP~-sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 420 -LPSGLLSLSVYRN-QLTRLPE-SLIHLSSETTVNLEGNP 456 (788)
T ss_pred -chhhhhhhhhccC-cccccCh-HHhhccCCCeEECCCCC
Confidence 2345666776664 4556665 45566777777777654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=2.7e-13 Score=158.44 Aligned_cols=259 Identities=18% Similarity=0.150 Sum_probs=181.6
Q ss_pred CceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEEecC
Q 045843 528 CRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEILDLS 607 (913)
Q Consensus 528 ~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~L~ 607 (913)
..-..|+++++.++.+|+.+. .+|+.|++++|+++.+|.. +++|++|++++ +.++.+|.. .++|++|+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~-N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSG-NQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecC-CccCcccCc---ccccceeecc
Confidence 445678999999999988652 4899999999999999863 57899999999 688888853 4688999999
Q ss_pred CCcCCcCCCccccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecCCCCC
Q 045843 608 HTGICCLPSEIDLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFADGEGF 687 (913)
Q Consensus 608 ~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l 687 (913)
+|.+..+|... . +|+.|++..+.. ..+...
T Consensus 271 ~N~L~~Lp~lp--~-------~L~~L~Ls~N~L-----------------------------------------t~LP~~ 300 (788)
T PRK15387 271 SNPLTHLPALP--S-------GLCKLWIFGNQL-----------------------------------------TSLPVL 300 (788)
T ss_pred CCchhhhhhch--h-------hcCEEECcCCcc-----------------------------------------cccccc
Confidence 99887776522 2 566666655411 111111
Q ss_pred chhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEecccccccchhcc
Q 045843 688 PDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWK 767 (913)
Q Consensus 688 ~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~ 767 (913)
+ ..|+.|.+. .+.+..++.. ..+|+.|.+++|. +..++. .+++|+.|++++. .+.....
T Consensus 301 p-~~L~~LdLS-------~N~L~~Lp~l----p~~L~~L~Ls~N~-L~~LP~-------lp~~Lq~LdLS~N-~Ls~LP~ 359 (788)
T PRK15387 301 P-PGLQELSVS-------DNQLASLPAL----PSELCKLWAYNNQ-LTSLPT-------LPSGLQELSVSDN-QLASLPT 359 (788)
T ss_pred c-cccceeECC-------CCccccCCCC----cccccccccccCc-cccccc-------cccccceEecCCC-ccCCCCC
Confidence 2 345555555 3444445432 2467888888743 323221 2458999999763 3332111
Q ss_pred ccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccc
Q 045843 768 GSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSI 847 (913)
Q Consensus 768 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i 847 (913)
..++|+.|++++ +.+..+ | . ..++|+.|++++|. ++.++. .+++|+.|+++++ .+..+
T Consensus 360 ------lp~~L~~L~Ls~-N~L~~L-P--~--l~~~L~~LdLs~N~-Lt~LP~--------l~s~L~~LdLS~N-~LssI 417 (788)
T PRK15387 360 ------LPSELYKLWAYN-NRLTSL-P--A--LPSGLKELIVSGNR-LTSLPV--------LPSELKELMVSGN-RLTSL 417 (788)
T ss_pred ------CCcccceehhhc-cccccC-c--c--cccccceEEecCCc-ccCCCC--------cccCCCEEEccCC-cCCCC
Confidence 246799999998 667766 2 2 24689999999876 555542 3478999999997 47777
Q ss_pred cccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeeccccccc
Q 045843 848 CHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSS 894 (913)
Q Consensus 848 ~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~ 894 (913)
|. .+.+|+.|+++++ .++.+|..+..+++|..++.+.+-++.
T Consensus 418 P~----l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 418 PM----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred Cc----chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCc
Confidence 65 2457899999994 799999999999999999999988764
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=1e-14 Score=164.56 Aligned_cols=264 Identities=21% Similarity=0.253 Sum_probs=165.1
Q ss_pred hhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCcc
Q 045843 507 VANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCC 586 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~ 586 (913)
++++|....|.+..+-..+...+|.+++++.|.+..+| +.++.+.+|+.|+..+|.++.+|..+....+|++|++.. +
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~-n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY-N 297 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh-h
Confidence 56677777777665555566677888888888888887 445788888888888888888888888888888888877 6
Q ss_pred CccccChhhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCC
Q 045843 587 QLMRLPAEVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSP 664 (913)
Q Consensus 587 ~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 664 (913)
.+..+|...+.+++|++|+|..|++..+|..+ .+. ..|+.|+...+..+ .
T Consensus 298 el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~------~~l~~ln~s~n~l~---------~------------- 349 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLN------ASLNTLNVSSNKLS---------T------------- 349 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhccccccchHHHhhhh------HHHHHHhhhhcccc---------c-------------
Confidence 78888887778888888888888887777654 111 01333332222000 0
Q ss_pred CccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccc--cCccccCcccCcceEEecccCCceEeecCCC
Q 045843 665 HMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAAN--LSDFGANKFGDVEACIVEDCNEMISIIDGNL 742 (913)
Q Consensus 665 ~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~--l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l 742 (913)
+...+.-....|..|... .+.++. +|-+ .++.+|+.|+++. +.+..+++..+
T Consensus 350 ----------------lp~~~e~~~~~Lq~Lyla-------nN~Ltd~c~p~l--~~~~hLKVLhLsy-NrL~~fpas~~ 403 (1081)
T KOG0618|consen 350 ----------------LPSYEENNHAALQELYLA-------NNHLTDSCFPVL--VNFKHLKVLHLSY-NRLNSFPASKL 403 (1081)
T ss_pred ----------------cccccchhhHHHHHHHHh-------cCcccccchhhh--ccccceeeeeecc-cccccCCHHHH
Confidence 000111111445555555 333332 3333 6778888888887 44434555445
Q ss_pred cccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCC
Q 045843 743 TEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAG 822 (913)
Q Consensus 743 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~ 822 (913)
. .++.|+.|+++|.. ++.... ....++.|+.|...+ +++... |-+..++.|+.++++.| .+..+..
T Consensus 404 ~---kle~LeeL~LSGNk-L~~Lp~---tva~~~~L~tL~ahs-N~l~~f---Pe~~~l~qL~~lDlS~N-~L~~~~l-- 469 (1081)
T KOG0618|consen 404 R---KLEELEELNLSGNK-LTTLPD---TVANLGRLHTLRAHS-NQLLSF---PELAQLPQLKVLDLSCN-NLSEVTL-- 469 (1081)
T ss_pred h---chHHhHHHhcccch-hhhhhH---HHHhhhhhHHHhhcC-Cceeec---hhhhhcCcceEEecccc-hhhhhhh--
Confidence 5 67778888887632 222211 112567777777766 566655 57778888888888744 4554431
Q ss_pred cccCCCC-CCccceeecccccc
Q 045843 823 SAVDSRA-FPKLKSFQLINLPK 843 (913)
Q Consensus 823 ~~~~~~~-f~~L~~L~l~~~~~ 843 (913)
.... -|+|++|++++++.
T Consensus 470 ---~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 470 ---PEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ---hhhCCCcccceeeccCCcc
Confidence 1111 27888888888765
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.42 E-value=7.2e-15 Score=150.69 Aligned_cols=261 Identities=22% Similarity=0.269 Sum_probs=164.5
Q ss_pred hhceeeeccccccCCCCC-CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCc
Q 045843 507 VANRISLIRMCLSTLPKR-PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNC 585 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c 585 (913)
....+.+.+|.+..+... ..+..|.+|++.+|.+..+|+.+ +.+..+..|+.++|++..+|+.++.+..|+.|+.+.
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~- 123 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS- 123 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-
Confidence 345566777777665544 67778888888888888888876 778888888888888888888888888888888888
Q ss_pred cCccccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccccccccC-CCCCccceeeeeccccCCC
Q 045843 586 CQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFINASKSWN-GNSNFRSFSILVGYNQRSS 663 (913)
Q Consensus 586 ~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~-~~~~l~~l~~l~~~~~~~~ 663 (913)
+.+.++|++++.+..|+.|+..+|++..+|.++ .+. +|..+.+..+...... ...+.+.|..+
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~-------~l~~l~~~~n~l~~l~~~~i~m~~L~~l-------- 188 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS-------KLSKLDLEGNKLKALPENHIAMKRLKHL-------- 188 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHH-------HHHHhhccccchhhCCHHHHHHHHHHhc--------
Confidence 678888888888888888888888888888877 444 4444444333111000 00001111111
Q ss_pred CCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCc
Q 045843 664 PHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLT 743 (913)
Q Consensus 664 ~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 743 (913)
..|++.-..--++++++ ..|..|.+. .+.+..+|++ .+++.|.+|++.. +.++.++..-+.
T Consensus 189 -------d~~~N~L~tlP~~lg~l--~~L~~LyL~-------~Nki~~lPef--~gcs~L~Elh~g~-N~i~~lpae~~~ 249 (565)
T KOG0472|consen 189 -------DCNSNLLETLPPELGGL--ESLELLYLR-------RNKIRFLPEF--PGCSLLKELHVGE-NQIEMLPAEHLK 249 (565)
T ss_pred -------ccchhhhhcCChhhcch--hhhHHHHhh-------hcccccCCCC--CccHHHHHHHhcc-cHHHhhHHHHhc
Confidence 11111111122344444 455555554 5566677765 7788888888876 444233332233
Q ss_pred ccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCch
Q 045843 744 EGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKE 814 (913)
Q Consensus 744 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~ 814 (913)
.+++|..|++.+. +++.. |....-+.+|.+|++++ +.+..+ +..++++ +|+.|.+.+++.
T Consensus 250 ---~L~~l~vLDLRdN-klke~---Pde~clLrsL~rLDlSN-N~is~L--p~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 250 ---HLNSLLVLDLRDN-KLKEV---PDEICLLRSLERLDLSN-NDISSL--PYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ---ccccceeeecccc-ccccC---chHHHHhhhhhhhcccC-CccccC--Ccccccc-eeeehhhcCCch
Confidence 5677777777542 12211 11112467888888888 667777 2678888 888888888874
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=6.1e-12 Score=148.35 Aligned_cols=115 Identities=23% Similarity=0.422 Sum_probs=83.9
Q ss_pred hhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCcc
Q 045843 507 VANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCC 586 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~ 586 (913)
+...|.+.++.+..+|... .++|+.|++++|.++.+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++ +
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~-N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI-N 251 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC-C
Confidence 3456777777777777532 3578888888888888887653 478888888888888887554 3688888888 5
Q ss_pred CccccChhhhccccCCEEecCCCcCCcCCCccccccccccccccceeecccc
Q 045843 587 QLMRLPAEVGDLHNLEILDLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 587 ~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~ 638 (913)
.+..+|..+. .+|++|++++|.+..+|..+. . +|+.|++..+
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~-~-------sL~~L~Ls~N 293 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP-E-------ELRYLSVYDN 293 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC-C-------CCcEEECCCC
Confidence 6778887664 578888888888877776441 2 6777776655
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.30 E-value=2.2e-10 Score=143.99 Aligned_cols=283 Identities=14% Similarity=0.191 Sum_probs=178.0
Q ss_pred ccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC-CCCHHHHHHHHHHHccCCc
Q 045843 162 VPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS-EGNIRDIQEVLLKRLDLRA 240 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~ 240 (913)
.+-|..-.+.+- .....+++.|.|++|.||||++....+.. ..++|+++.. +.+...+...++..++...
T Consensus 16 ~~~R~rl~~~l~---~~~~~~~~~v~apaG~GKTtl~~~~~~~~------~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~ 86 (903)
T PRK04841 16 TVVRERLLAKLS---GANNYRLVLVTSPAGYGKTTLISQWAAGK------NNLGWYSLDESDNQPERFASYLIAALQQAT 86 (903)
T ss_pred cCcchHHHHHHh---cccCCCeEEEECCCCCCHHHHHHHHHHhC------CCeEEEecCcccCCHHHHHHHHHHHHHHhc
Confidence 345554444332 12457899999999999999999988532 2689999864 4566666677777664211
Q ss_pred cC--------------CChHHHHHHHHHHHc--cCCeEEEEeCCCCccccc---cc--cCCCCCCCceEEEEeechhhh-
Q 045843 241 ED--------------HNIDQRADMISEELK--DKSYVLFLDEVSTEINLR---DI--GIHDEHKNGKVVFACIFRNIC- 298 (913)
Q Consensus 241 ~~--------------~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~---~~--~~~~~~~~s~iivTTR~~~v~- 298 (913)
.. .+.......+...+. +.+++|||||+...++-. .+ .+.....+.++|||||...-.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~ 166 (903)
T PRK04841 87 NGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLG 166 (903)
T ss_pred CcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCc
Confidence 10 122233333433433 679999999998754211 11 122345677898999984321
Q ss_pred --hc--CCceEEcc----cCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHH
Q 045843 299 --GQ--IDEEVNVQ----RLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDM 370 (913)
Q Consensus 299 --~~--~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~ 370 (913)
.. ......+. +|+.+|+.+||....+.. --.+....|.+.|+|.|+++..++..+....... ...
T Consensus 167 ~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~ 239 (903)
T PRK04841 167 IANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDS 239 (903)
T ss_pred hHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhh
Confidence 11 33455565 999999999998776542 2345678899999999999999988776442100 111
Q ss_pred HHhhcCCCCCCCCchHHHHHHHH-HhccCCchhHHHHhhhhccccCCccccHHHHHHHHHhcCchhhhcchHHHHHHHHH
Q 045843 371 LSQLRSPSMAPKQELEEVYKSFK-LVCDKLPSDKQLCLLYWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEARDRGQS 449 (913)
Q Consensus 371 ~~~l~~~~~~~~~~~~~i~~~l~-~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~ 449 (913)
...+.. . +...+...+. -.|+.||++.+..++..|+++ .|+.+ +.. .+.. .+.+..
T Consensus 240 ~~~~~~-----~-~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~-----~l~~--------~~~~~~ 296 (903)
T PRK04841 240 ARRLAG-----I-NASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIV-----RVTG--------EENGQM 296 (903)
T ss_pred hHhhcC-----C-CchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHH-----HHcC--------CCcHHH
Confidence 111100 0 0123444333 347899999999999999987 33322 221 1111 223467
Q ss_pred HHHHHHHhccccc-CC-CccccchhHHHHHHHHHHh
Q 045843 450 ILDEFVKKSLLEK-GR-KASHYKMFEHFQRAALRIA 483 (913)
Q Consensus 450 ~~~~L~~~~ll~~-~~-~~~~~~mHdlv~~~a~~i~ 483 (913)
.+++|.+++++.. .+ +...|+.|+++++++....
T Consensus 297 ~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 297 RLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 8999999999753 33 3457899999999998765
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=2.1e-13 Score=140.03 Aligned_cols=116 Identities=25% Similarity=0.443 Sum_probs=97.2
Q ss_pred ccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceeecCCccCccccChh
Q 045843 516 MCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNCCQLMRLPAE 594 (913)
Q Consensus 516 ~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c~~l~~lP~~ 594 (913)
..+.++|.... +....+.|..|.++.+|+..|+.++.||.||||+|+|+.+ |..|..|..|-.|-+.+++.|+.+|+.
T Consensus 56 ~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 56 KGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 34555565422 3467788999999999999999999999999999999976 788999999999998888899999986
Q ss_pred -hhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeeccccc
Q 045843 595 -VGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINA 639 (913)
Q Consensus 595 -i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~ 639 (913)
|++|..|+.|.+.-|++..++... .|. +|..|.++++.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~-------~l~lLslyDn~ 175 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLP-------SLSLLSLYDNK 175 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhh-------hcchhcccchh
Confidence 889999999999999888777766 777 77778877763
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=1e-11 Score=146.42 Aligned_cols=228 Identities=19% Similarity=0.203 Sum_probs=150.1
Q ss_pred hhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCC
Q 045843 505 WEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNN 584 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~ 584 (913)
+..++.|.+.+|.+..+|... +++|++|++++|.++.+|..+ ..+|+.|+|++|.+..+|..+. .+|++|++++
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 357899999999999998753 368999999999999998765 3579999999999999998775 5899999997
Q ss_pred ccCccccChhhhccccCCEEecCCCcCCcCCCccccccccccccccceeecccccccccCCCCCccceeeeeccccCCCC
Q 045843 585 CCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSP 664 (913)
Q Consensus 585 c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 664 (913)
+.+..+|..+. .+|++|++++|.+..+|..+. . +|+.|++..+....+
T Consensus 272 -N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp-~-------sL~~L~Ls~N~Lt~L--------------------- 319 (754)
T PRK15370 272 -NKISCLPENLP--EELRYLSVYDNSIRTLPAHLP-S-------GITHLNVQSNSLTAL--------------------- 319 (754)
T ss_pred -CccCccccccC--CCCcEEECCCCccccCcccch-h-------hHHHHHhcCCccccC---------------------
Confidence 68889998764 589999999999988876441 1 455666555411000
Q ss_pred CccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcc
Q 045843 665 HMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTE 744 (913)
Q Consensus 665 ~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 744 (913)
. ..++ ..|+.|.+. .+.+..++.. + .++|+.|++++|. +..++..
T Consensus 320 -----------------P--~~l~-~sL~~L~Ls-------~N~Lt~LP~~-l--~~sL~~L~Ls~N~-L~~LP~~---- 364 (754)
T PRK15370 320 -----------------P--ETLP-PGLKTLEAG-------ENALTSLPAS-L--PPELQVLDVSKNQ-ITVLPET---- 364 (754)
T ss_pred -----------------C--cccc-ccceecccc-------CCccccCChh-h--cCcccEEECCCCC-CCcCChh----
Confidence 0 0011 234444443 2333344432 1 2578888888754 3232221
Q ss_pred cccccCCceEecccccccchhccccccccccccccEEeeccCccccccCc--hHHHhhcCCCcEEEEccCch
Q 045843 745 GVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFS--EEIIFQLNQIQYLQVEDCKE 814 (913)
Q Consensus 745 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--~~~l~~l~~L~~L~l~~~~~ 814 (913)
.+++|+.|+|+++. +..... ....+|+.|++++ +++..+.. +..+..++++..|.+.+|+.
T Consensus 365 --lp~~L~~LdLs~N~-Lt~LP~-----~l~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 365 --LPPTITTLDVSRNA-LTNLPE-----NLPAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred --hcCCcCEEECCCCc-CCCCCH-----hHHHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 24678888887643 221111 1224688888888 45555510 12334457888888887764
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.24 E-value=2.1e-09 Score=121.10 Aligned_cols=286 Identities=17% Similarity=0.179 Sum_probs=173.0
Q ss_pred ccccchHHHHHHHHHHHhc----CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 160 EEVPSLNKHLKMLQECLRN----VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..++||++++++|...+.+ .....+.|+|++|+|||++++.++++.......-..+++.+....+...++..|+++
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 3578999999999988832 345678899999999999999999987633323345667777777888999999999
Q ss_pred ccCC-c--cCCChHHHHHHHHHHHc--cCCeEEEEeCCCCcc---ccc---cc-cCCCCCCCce--EEEEeechhhhhc-
Q 045843 236 LDLR-A--EDHNIDQRADMISEELK--DKSYVLFLDEVSTEI---NLR---DI-GIHDEHKNGK--VVFACIFRNICGQ- 300 (913)
Q Consensus 236 l~~~-~--~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---~~~---~~-~~~~~~~~s~--iivTTR~~~v~~~- 300 (913)
+... . .+.+.++....+.+.++ +++.+||||+++... ..+ .+ .......+++ +|.++....+...
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l 189 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYIL 189 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhc
Confidence 8752 2 22456677777777775 456899999998743 111 11 1112222333 6666665443221
Q ss_pred --------CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH----hCCcHHHHHHHHHHhh----c-C--
Q 045843 301 --------IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINE----CGGMPHMIKLIGSSLA----N-V-- 361 (913)
Q Consensus 301 --------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~----c~GlPlai~~~~~~l~----~-~-- 361 (913)
....+.+++++.++..+++..++........--++..+.|++. .|..+.|+.++-.+.. . .
T Consensus 190 ~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~ 269 (394)
T PRK00411 190 DPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRK 269 (394)
T ss_pred CHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 2357899999999999999987632210111123334444444 4557777777654321 1 1
Q ss_pred CChHHHHHHHHhhcCCCCCCCCchHHHHHHHHHhccCCchhHHHHhhhhccc-cC-CccccHHHHHHHH--HhcCchhhh
Q 045843 362 SNPAIWRDMLSQLRSPSMAPKQELEEVYKSFKLVCDKLPSDKQLCLLYWAIF-PV-GYELHEDYIIECW--RAEQFFACL 437 (913)
Q Consensus 362 ~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~f-p~-~~~i~~~~Li~~W--~a~g~i~~~ 437 (913)
-+.+..+.+.+... .....-.+..||.+.|..+..++.. .. ...+...++.... +++.+-.
T Consensus 270 I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~-- 334 (394)
T PRK00411 270 VTEEDVRKAYEKSE-------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY-- 334 (394)
T ss_pred cCHHHHHHHHHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC--
Confidence 24455555554421 1223446789999877655444422 21 1345555554332 1111100
Q ss_pred cchHHHHHHHHHHHHHHHHhccccc
Q 045843 438 RKLGEARDRGQSILDEFVKKSLLEK 462 (913)
Q Consensus 438 ~~~~~~~~~~~~~~~~L~~~~ll~~ 462 (913)
..-......+|+++|...+++..
T Consensus 335 --~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 335 --EPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred --CcCcHHHHHHHHHHHHhcCCeEE
Confidence 00023445678999999999875
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=2.3e-13 Score=123.66 Aligned_cols=111 Identities=31% Similarity=0.423 Sum_probs=88.5
Q ss_pred cCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhcc
Q 045843 519 STLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDL 598 (913)
Q Consensus 519 ~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L 598 (913)
..++....++++..|.+++|.++.+|+.+ ..+.+|++|++++|+|+.+|.+|+.|+.|+.|++.- +.+..+|..||.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCC
Confidence 34555566777888888888888888886 788888888888888888888888888888888887 6788888888888
Q ss_pred ccCCEEecCCCcC--CcCCCcc-ccccccccccccceeecccc
Q 045843 599 HNLEILDLSHTGI--CCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 599 ~~L~~L~L~~~~~--~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+-|+.||++.|++ ..+|..+ .++ .|+.|++.++
T Consensus 102 p~levldltynnl~e~~lpgnff~m~-------tlralyl~dn 137 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMT-------TLRALYLGDN 137 (264)
T ss_pred chhhhhhccccccccccCCcchhHHH-------HHHHHHhcCC
Confidence 8888888888887 5677776 666 6666666655
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=1.5e-09 Score=115.34 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=118.3
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHH-
Q 045843 178 NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEEL- 256 (913)
Q Consensus 178 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l- 256 (913)
..+..++.|+|++|+||||+++.+++..... .+ ...|+ +....+..+++..|+..++......+.......+...+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 3445689999999999999999999887522 11 22333 33345788899999999887654433333334443333
Q ss_pred ----ccCCeEEEEeCCCCcc--ccccccC-C----CCCCCceEEEEeechhh---hh-----c---CCceEEcccCChHH
Q 045843 257 ----KDKSYVLFLDEVSTEI--NLRDIGI-H----DEHKNGKVVFACIFRNI---CG-----Q---IDEEVNVQRLSGKD 314 (913)
Q Consensus 257 ----~~kr~LlVlDdv~~~~--~~~~~~~-~----~~~~~s~iivTTR~~~v---~~-----~---~~~~~~l~~L~~~~ 314 (913)
.+++.+||+||+|... .++.+.. . .......|++|...+-. .. . ....+.+++++.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 5788999999999854 3333321 1 12223355666554311 10 0 24568899999999
Q ss_pred HHHHHHHHhCCCC--CCCCChHHHHHHHHHHhCCcHHHHHHHHHHh
Q 045843 315 AQKLFWETVGVQL--KDCRDIKPVARLIINECGGMPHMIKLIGSSL 358 (913)
Q Consensus 315 ~~~Lf~~~~~~~~--~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l 358 (913)
..+++...+.... ....-.++..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999988764331 1222346789999999999999999988776
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=2e-12 Score=117.67 Aligned_cols=129 Identities=31% Similarity=0.450 Sum_probs=106.1
Q ss_pred CHHhhhhhceeeeccccccCCCCC-CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccc--ccCccccCccCc
Q 045843 501 SEEEWEVANRISLIRMCLSTLPKR-PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIK--LLPSSISSLTNL 577 (913)
Q Consensus 501 ~~~~~~~~~~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~--~lp~~i~~L~~L 577 (913)
++....++..|.+++|.++.+|.. ..+++||.|++.-|.+.-+|.++ +.++.|++|||.+|++. .+|..|..+..|
T Consensus 51 nia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCCchhhhhhccccccccccCCcchhHHHHH
Confidence 445566778888888888888876 77888888888888777777774 88888888888888876 688888888888
Q ss_pred ceeecCCccCccccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccc
Q 045843 578 KALFLNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 578 ~~L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+.|.|+. +.+..+|..+++|++|+.|.++.|.+-.+|..+ .|+ .|+.|++.++
T Consensus 130 ralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt-------~lrelhiqgn 183 (264)
T KOG0617|consen 130 RALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLT-------RLRELHIQGN 183 (264)
T ss_pred HHHHhcC-CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHH-------HHHHHhcccc
Confidence 8888888 788888888888888888888888888888888 788 7888877765
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.13 E-value=1.6e-08 Score=112.65 Aligned_cols=287 Identities=13% Similarity=0.151 Sum_probs=170.6
Q ss_pred cccchHHHHHHHHHHHhc----CCCcEEEEECCCCCcHHHHHHHHHHHhccc-CCC---ceEEEEEeCCCCCHHHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLRN----VGTKRICIWGPPGVGKTTIMENLHDAIGES-RQF---DFIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~i~~~i 232 (913)
.++||++++++|..++.. .....+.|+|++|+|||++++.+++..... ... -..+|+.+....+...++..|
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 578999999999999853 345689999999999999999999876421 111 245677777777788899999
Q ss_pred HHHcc---CCcc--CCChHHHHHHHHHHHc--cCCeEEEEeCCCCcc-ccc----cc-cC--CCCC--CCceEEEEeech
Q 045843 233 LKRLD---LRAE--DHNIDQRADMISEELK--DKSYVLFLDEVSTEI-NLR----DI-GI--HDEH--KNGKVVFACIFR 295 (913)
Q Consensus 233 ~~~l~---~~~~--~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~~----~~-~~--~~~~--~~s~iivTTR~~ 295 (913)
++++. .... +.+..+....+.+.+. +++++||||+++... ... .+ .. .... ....+|++|+..
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~ 175 (365)
T TIGR02928 96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL 175 (365)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc
Confidence 99983 3222 2344555666666663 567899999998762 111 11 11 1111 233455555443
Q ss_pred hhhhc---------CCceEEcccCChHHHHHHHHHHhCCC---CCCCCChHHHHHHHHHHhCCcHHH-HHHHHHHhh---
Q 045843 296 NICGQ---------IDEEVNVQRLSGKDAQKLFWETVGVQ---LKDCRDIKPVARLIINECGGMPHM-IKLIGSSLA--- 359 (913)
Q Consensus 296 ~v~~~---------~~~~~~l~~L~~~~~~~Lf~~~~~~~---~~~~~~~~~~~~~I~~~c~GlPla-i~~~~~~l~--- 359 (913)
..... ....+.+++++.++..+++..++... ..-.++..+....++....|.|-. +.++-.+..
T Consensus 176 ~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 176 KFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred chHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 32111 23568999999999999999887421 111223334555567777788843 333322211
Q ss_pred -c---CCChHHHHHHHHhhcCCCCCCCCchHHHHHHHHHhccCCchhHHHHhhhhccc--cCCccccHHHHHHHHHh-cC
Q 045843 360 -N---VSNPAIWRDMLSQLRSPSMAPKQELEEVYKSFKLVCDKLPSDKQLCLLYWAIF--PVGYELHEDYIIECWRA-EQ 432 (913)
Q Consensus 360 -~---~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~f--p~~~~i~~~~Li~~W~a-~g 432 (913)
. .-+.+..+.+.+.+. .....-++..||.+.|..+..++.. -++..+...++...+-. ..
T Consensus 256 ~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 256 REGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 133444444443321 1223345678888877655544422 13344666666664321 11
Q ss_pred chhhhcchHHHHHHHHHHHHHHHHhcccccC
Q 045843 433 FFACLRKLGEARDRGQSILDEFVKKSLLEKG 463 (913)
Q Consensus 433 ~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 463 (913)
.+.. ....+.....+++.|...|++...
T Consensus 323 ~~~~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 323 DIGV---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred hcCC---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1110 112346777889999999998753
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=2.5e-12 Score=132.26 Aligned_cols=313 Identities=17% Similarity=0.135 Sum_probs=188.9
Q ss_pred hhhhhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccC-CcccccCc-cccCccCcce
Q 045843 504 EWEVANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHD-TKIKLLPS-SISSLTNLKA 579 (913)
Q Consensus 504 ~~~~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~-~~i~~lp~-~i~~L~~L~~ 579 (913)
-+.....|.+..|.+..+|+. ..+++||.|+|+.|.++.+.++.|++++.|-.|-+-+ |+|+.+|+ .|++|..||.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 345677889999999999976 8999999999999999999999999999887766655 99999996 4889999999
Q ss_pred eecCCccCcccc-ChhhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeee
Q 045843 580 LFLNNCCQLMRL-PAEVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILV 656 (913)
Q Consensus 580 L~L~~c~~l~~l-P~~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~ 656 (913)
|.+.. +.+..+ ...+..|++|..|.+-.|.+..++..- .+. .++++++..+... .+-.++++.
T Consensus 145 LllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~-------~i~tlhlA~np~i------cdCnL~wla 210 (498)
T KOG4237|consen 145 LLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA-------AIKTLHLAQNPFI------CDCNLPWLA 210 (498)
T ss_pred HhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchh-------ccchHhhhcCccc------cccccchhh
Confidence 99998 455555 456899999999999999998888854 777 7777776655211 111111111
Q ss_pred ccccCCCCCccccccCCccccceeecCCCCCchhh----HHHhcccccccccccccccccCccccCcccCcceEEecccC
Q 045843 657 GYNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAV----VKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCN 732 (913)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~----L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 732 (913)
.+... ..+++..-.|.....+.-..+...++.. ++.+.-. + ...+......|..-|.++++|+.|.++++
T Consensus 211 ~~~a~--~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~--~-~~~d~~d~~cP~~cf~~L~~L~~lnlsnN- 284 (498)
T KOG4237|consen 211 DDLAM--NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSR--L-SSEDFPDSICPAKCFKKLPNLRKLNLSNN- 284 (498)
T ss_pred hHHhh--chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHh--h-ccccCcCCcChHHHHhhcccceEeccCCC-
Confidence 11000 0001111111111111111111111000 1111000 0 00011111122223578899999999884
Q ss_pred CceEeecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccC
Q 045843 733 EMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDC 812 (913)
Q Consensus 733 ~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~ 812 (913)
.+..+-+..+. ....++.|+|... .+...-.+ -+..+.+|+.|+|++ ++++.+ .+..+..+..|..|.+-.|
T Consensus 285 ~i~~i~~~aFe---~~a~l~eL~L~~N-~l~~v~~~--~f~~ls~L~tL~L~~-N~it~~-~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 285 KITRIEDGAFE---GAAELQELYLTRN-KLEFVSSG--MFQGLSGLKTLSLYD-NQITTV-APGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred ccchhhhhhhc---chhhhhhhhcCcc-hHHHHHHH--hhhccccceeeeecC-CeeEEE-ecccccccceeeeeehccC
Confidence 44244444355 6778888888542 12211111 113588899999999 778777 4477888889999998654
Q ss_pred ch--------hHhhhcCC---cccCCCCCCccceeeccccccc
Q 045843 813 KE--------MEEIIEAG---SAVDSRAFPKLKSFQLINLPKL 844 (913)
Q Consensus 813 ~~--------l~~i~~~~---~~~~~~~f~~L~~L~l~~~~~l 844 (913)
+. +.++.... .......-..++.+.+++.+.-
T Consensus 357 p~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~ 399 (498)
T KOG4237|consen 357 PFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFG 399 (498)
T ss_pred cccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhcccc
Confidence 42 12222111 1122334447778888876543
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.11 E-value=9.4e-09 Score=111.97 Aligned_cols=273 Identities=12% Similarity=0.142 Sum_probs=156.9
Q ss_pred CccccccchHHHHHHHHHHHh-----cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLR-----NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
..+.+|+|++..++.+..++. +.....+.++|++|+||||+|+.+++.... .+. ++..+ .......+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~~---~~~~~-~~~~~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV--NIR---ITSGP-ALEKPGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC--CeE---EEecc-cccChHHHHH
Confidence 456788999999999887774 234568899999999999999999998762 221 11111 1111222333
Q ss_pred HHHHccCCccC--CCh----HHHHHHHHHHHccCCeEEEEeCCCCccccccccCCCCCCCceEEEEeechhhhhc----C
Q 045843 232 LLKRLDLRAED--HNI----DQRADMISEELKDKSYVLFLDEVSTEINLRDIGIHDEHKNGKVVFACIFRNICGQ----I 301 (913)
Q Consensus 232 i~~~l~~~~~~--~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~s~iivTTR~~~v~~~----~ 301 (913)
++..+....-- ++. ....+.+...+.+.+..+|+|+..+...+.. .. .+.+-|..||+...+... .
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~-~l---~~~~li~at~~~~~l~~~L~sRf 171 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL-DL---PPFTLIGATTRAGLLTSPLRDRF 171 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee-cC---CCceEEeecCCcccCCHHHHHhc
Confidence 44443321100 111 1123344555566666677766554332211 11 224556677775554332 4
Q ss_pred CceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCC
Q 045843 302 DEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDMLSQLRSPSMAP 381 (913)
Q Consensus 302 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~ 381 (913)
...+.+++++.++..+++.+.+... ...--++....|++.|+|.|-.+..+...+. .|....+ . ..-.
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~--~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~---~-~~I~ 239 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARIL--GVEIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKG---D-GVIT 239 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHc--CCCcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcC---C-CCCC
Confidence 4678999999999999999887654 2233456789999999999954444443322 2222211 1 1111
Q ss_pred CCchHHHHHHHHHhccCCchhHHHHhh-hhccccCCccccHHHHHHHHHhcCchhhhcchHHHHHHHHHHHH-HHHHhcc
Q 045843 382 KQELEEVYKSFKLVCDKLPSDKQLCLL-YWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEARDRGQSILD-EFVKKSL 459 (913)
Q Consensus 382 ~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~~l 459 (913)
..........+...|..|++..+..+. ....|+.+ .+..+.+-.. +. ...+.+++.++ .|++.+|
T Consensus 240 ~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~------lg------~~~~~~~~~~e~~Li~~~l 306 (328)
T PRK00080 240 KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAA------LG------EERDTIEDVYEPYLIQQGF 306 (328)
T ss_pred HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHH------HC------CCcchHHHHhhHHHHHcCC
Confidence 111244556667778888887666664 56667655 3444443221 11 12334444455 7888888
Q ss_pred cccCC
Q 045843 460 LEKGR 464 (913)
Q Consensus 460 l~~~~ 464 (913)
++...
T Consensus 307 i~~~~ 311 (328)
T PRK00080 307 IQRTP 311 (328)
T ss_pred cccCC
Confidence 87554
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.10 E-value=5.9e-09 Score=112.89 Aligned_cols=271 Identities=12% Similarity=0.138 Sum_probs=158.2
Q ss_pred cccccchHHHHHHHHHHHh-----cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHH
Q 045843 159 MEEVPSLNKHLKMLQECLR-----NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 233 (913)
+.+|+|++..++.|..++. ......+.++|++|+|||+||+.+++.... .+ ..+..+.......+. ..+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~---~~~~~~~~~~~~~l~-~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NL---KITSGPALEKPGDLA-AIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CE---EEeccchhcCchhHH-HHH
Confidence 4578999999999988884 234567899999999999999999988752 22 112221111222222 223
Q ss_pred HHccCCc----cC-CC-hHHHHHHHHHHHccCCeEEEEeCCCCccccccccCCCCCCCceEEEEeechhhhhc----CCc
Q 045843 234 KRLDLRA----ED-HN-IDQRADMISEELKDKSYVLFLDEVSTEINLRDIGIHDEHKNGKVVFACIFRNICGQ----IDE 303 (913)
Q Consensus 234 ~~l~~~~----~~-~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~s~iivTTR~~~v~~~----~~~ 303 (913)
..++... ++ .. .......+...+.+.+..+|+|+..+...+... ..+.+-|..||+...+... ...
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~li~~t~~~~~l~~~l~sR~~~ 152 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD----LPPFTLVGATTRAGMLTSPLRDRFGI 152 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec----CCCeEEEEecCCccccCHHHHhhcce
Confidence 3333221 00 00 112334466666677777888876655444322 1225566677776555433 445
Q ss_pred eEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCCC
Q 045843 304 EVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDMLSQLRSPSMAPKQ 383 (913)
Q Consensus 304 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~ 383 (913)
.+.+++++.++..+++.+.+... ...--++....|++.|+|.|-.+..++..+ |..+... .. .....+
T Consensus 153 ~~~l~~l~~~e~~~il~~~~~~~--~~~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~-~~-~~it~~ 220 (305)
T TIGR00635 153 ILRLEFYTVEELAEIVSRSAGLL--NVEIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVR-GQ-KIINRD 220 (305)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHh--CCCcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHc-CC-CCcCHH
Confidence 78999999999999999887643 222335677899999999996655444322 2211100 11 000011
Q ss_pred chHHHHHHHHHhccCCchhHHHHhh-hhccccCCccccHHHHHHHHHhcCchhhhcchHHHHHHHHHHHH-HHHHhcccc
Q 045843 384 ELEEVYKSFKLVCDKLPSDKQLCLL-YWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEARDRGQSILD-EFVKKSLLE 461 (913)
Q Consensus 384 ~~~~i~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~~ll~ 461 (913)
........+...|..++++.+..+. ..+.++.+ .+..+.+-... ......++..++ .|++++|++
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l------------g~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL------------GEDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh------------CCCcchHHHhhhHHHHHcCCcc
Confidence 1133334466778888888776555 44666543 34433332211 112345666677 699999997
Q ss_pred cCC
Q 045843 462 KGR 464 (913)
Q Consensus 462 ~~~ 464 (913)
...
T Consensus 288 ~~~ 290 (305)
T TIGR00635 288 RTP 290 (305)
T ss_pred cCC
Confidence 554
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.02 E-value=1.8e-09 Score=112.27 Aligned_cols=189 Identities=16% Similarity=0.196 Sum_probs=101.9
Q ss_pred ccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHH----------
Q 045843 162 VPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEV---------- 231 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~---------- 231 (913)
|+||++++++|.+++..+....+.|+|+.|+|||+|++.+.+... +.-...+|+...+......+...
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~--~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK--EKGYKVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT----EECCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh--hcCCcEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 689999999999999887788999999999999999999998874 21113444444443322221111
Q ss_pred ---HHHHccCCc-------cCCChHHHHHHHHHHHc--cCCeEEEEeCCCCcc-ccc---cc-------c--CCCCCCCc
Q 045843 232 ---LLKRLDLRA-------EDHNIDQRADMISEELK--DKSYVLFLDEVSTEI-NLR---DI-------G--IHDEHKNG 286 (913)
Q Consensus 232 ---i~~~l~~~~-------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~~~---~~-------~--~~~~~~~s 286 (913)
+...+.... ...........+.+.+. +++.+||+||+.... ... .+ . .....+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 111111110 01122233334444443 456999999998766 211 11 0 01233334
Q ss_pred eEEEEeechhhhh---c------CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 287 KVVFACIFRNICG---Q------IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 287 ~iivTTR~~~v~~---~------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
.|+++|...-... . ....+.+++|+.+++++++...+.... .-+.-++..++|+..+||.|..|.-
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELI-KLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhh-cccCCHHHHHHHHHHhCCCHHHHhc
Confidence 4444444322222 1 234599999999999999999764431 1122456679999999999988764
No 31
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.92 E-value=1.9e-08 Score=105.23 Aligned_cols=175 Identities=18% Similarity=0.271 Sum_probs=118.3
Q ss_pred ccCccccccchHHHH---HHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC-HHHHHH
Q 045843 155 HAKKMEEVPSLNKHL---KMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN-IRDIQE 230 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~---~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~ 230 (913)
.+..+.++||.+.-+ .-|.+++..+.+.-...||++|+||||||+.+..... ..| ..+|...+ ++++.+
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~f-----~~~sAv~~gvkdlr~ 91 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AAF-----EALSAVTSGVKDLRE 91 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cce-----EEeccccccHHHHHH
Confidence 345566778887766 3456667778888999999999999999999998766 444 44444332 333322
Q ss_pred HHHHHccCCccCCChHHHHHHH-HHHHccCCeEEEEeCCCCcc-ccccccCCCCCCCceEEEEeechhhhhc-------C
Q 045843 231 VLLKRLDLRAEDHNIDQRADMI-SEELKDKSYVLFLDEVSTEI-NLRDIGIHDEHKNGKVVFACIFRNICGQ-------I 301 (913)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~~~~s~iivTTR~~~v~~~-------~ 301 (913)
+++ .- +....|++.+|++|+|..-. ...+..+|.-.+|.-|+|-+..++..-. .
T Consensus 92 -i~e----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 92 -IIE----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred -HHH----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 222 22 22234899999999998743 4455567878888888876555543222 5
Q ss_pred CceEEcccCChHHHHHHHHHHhCCC-C---CCCC-ChHHHHHHHHHHhCCcHHHHHH
Q 045843 302 DEEVNVQRLSGKDAQKLFWETVGVQ-L---KDCR-DIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 302 ~~~~~l~~L~~~~~~~Lf~~~~~~~-~---~~~~-~~~~~~~~I~~~c~GlPlai~~ 353 (913)
..++.+++|+.+|-.+++.+.+... . .... --++....+++.++|---++-.
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN 211 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALN 211 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHH
Confidence 6799999999999999999954332 1 1112 2345777888999888654443
No 32
>PF05729 NACHT: NACHT domain
Probab=98.89 E-value=1.3e-08 Score=99.33 Aligned_cols=137 Identities=20% Similarity=0.356 Sum_probs=90.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCC----CceEEEEEeCCCCCHH---HHHHHHHHHccCCccCCChHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQ----FDFIFWVTVNSEGNIR---DIQEVLLKRLDLRAEDHNIDQRADMISE 254 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~~l~~ 254 (913)
+++.|+|.+|+||||+++.++.+...... +...+|+......+.. .+...|..+...... .... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~---~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA--PIEE---LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh--hhHH---HHHH
Confidence 57899999999999999999988765443 3456677766554332 344444444332211 1111 2222
Q ss_pred HH-ccCCeEEEEeCCCCccc---------ccccc---CC-CCCCCceEEEEeechhhhhc-----CCceEEcccCChHHH
Q 045843 255 EL-KDKSYVLFLDEVSTEIN---------LRDIG---IH-DEHKNGKVVFACIFRNICGQ-----IDEEVNVQRLSGKDA 315 (913)
Q Consensus 255 ~l-~~kr~LlVlDdv~~~~~---------~~~~~---~~-~~~~~s~iivTTR~~~v~~~-----~~~~~~l~~L~~~~~ 315 (913)
.+ +.++++||+|++++... +..+. ++ ....+.++|||+|....... ....+.+.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 22 57899999999987533 11111 12 24678999999999877222 345899999999999
Q ss_pred HHHHHHHh
Q 045843 316 QKLFWETV 323 (913)
Q Consensus 316 ~~Lf~~~~ 323 (913)
.+++++..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99997764
No 33
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.88 E-value=1.5e-07 Score=107.37 Aligned_cols=281 Identities=16% Similarity=0.207 Sum_probs=188.4
Q ss_pred HHHHHHHHhc-CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-CCHHHHHHHHHHHccCCccC----
Q 045843 169 LKMLQECLRN-VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE-GNIRDIQEVLLKRLDLRAED---- 242 (913)
Q Consensus 169 ~~~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~---- 242 (913)
...+++.|.+ .+.+.+.|..|.|.|||||+.+..... ..=..+.|....+. -++......++..++.-.++
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 3455566644 478999999999999999999998622 34456899998764 57888888888887643322
Q ss_pred ----------CChHHHHHHHHHHHc--cCCeEEEEeCCCCccc---cccc--cCCCCCCCceEEEEeechhhhhc-----
Q 045843 243 ----------HNIDQRADMISEELK--DKSYVLFLDEVSTEIN---LRDI--GIHDEHKNGKVVFACIFRNICGQ----- 300 (913)
Q Consensus 243 ----------~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~---~~~~--~~~~~~~~s~iivTTR~~~v~~~----- 300 (913)
.+...+...+...+. .++..+||||-.-..+ -..+ .+.....+-..|||||+..-...
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRl 180 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRL 180 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceee
Confidence 334455566665554 4689999999665322 1111 12256778899999999764433
Q ss_pred CCceEEcc----cCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHHHHhhcC
Q 045843 301 IDEEVNVQ----RLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDMLSQLRS 376 (913)
Q Consensus 301 ~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~ 376 (913)
.+..++++ .++.+|+-++|....... --+.-.+.+.+...|=+-|+..++=.++++.+.+.--..
T Consensus 181 r~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-----Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~------ 249 (894)
T COG2909 181 RDELLEIGSEELRFDTEEAAAFLNDRGSLP-----LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRG------ 249 (894)
T ss_pred hhhHHhcChHhhcCChHHHHHHHHHcCCCC-----CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhh------
Confidence 23333332 478999999998875332 334567889999999999999998888844222211111
Q ss_pred CCCCCCCch-HHH-HHHHHHhccCCchhHHHHhhhhccccCCccccHHHHHHHHHhcCchhhhcchHHHHHHHHHHHHHH
Q 045843 377 PSMAPKQEL-EEV-YKSFKLVCDKLPSDKQLCLLYWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEARDRGQSILDEF 454 (913)
Q Consensus 377 ~~~~~~~~~-~~i-~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~~L 454 (913)
..+. +.+ .-...=-++.||+++|..++-||+++.=. ..|++ .-+-++.|...+++|
T Consensus 250 -----LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~-------------~Ltg~~ng~amLe~L 307 (894)
T COG2909 250 -----LSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCN-------------ALTGEENGQAMLEEL 307 (894)
T ss_pred -----ccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHH-------------HHhcCCcHHHHHHHH
Confidence 1111 111 12233457899999999999999986421 22222 123356677889999
Q ss_pred HHhccccc--CCCccccchhHHHHHHHHHHhcc
Q 045843 455 VKKSLLEK--GRKASHYKMFEHFQRAALRIANH 485 (913)
Q Consensus 455 ~~~~ll~~--~~~~~~~~mHdlv~~~a~~i~~~ 485 (913)
.+++|+-. .+....|+.|.++.+|...-...
T Consensus 308 ~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 308 ERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 99998863 34677899999999998876554
No 34
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.83 E-value=2.6e-08 Score=97.61 Aligned_cols=176 Identities=17% Similarity=0.249 Sum_probs=98.6
Q ss_pred ccCccccccchHHHHHHHHHHHh-----cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHH
Q 045843 155 HAKKMEEVPSLNKHLKMLQECLR-----NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQ 229 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 229 (913)
.+..+.+|+|.++-++.+.-++. ++.+..+-++|++|+||||||+.+.+... ..|. ++....-....++
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~--~~~~---~~sg~~i~k~~dl- 92 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG--VNFK---ITSGPAIEKAGDL- 92 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHH-
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC--CCeE---eccchhhhhHHHH-
Confidence 34567789999999888654442 34577899999999999999999999987 4442 1221110011111
Q ss_pred HHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc---------cccccC---CCCCCC-----------c
Q 045843 230 EVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN---------LRDIGI---HDEHKN-----------G 286 (913)
Q Consensus 230 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---------~~~~~~---~~~~~~-----------s 286 (913)
..++..+ +++-+|.+|++..... .++..+ ...+.+ +
T Consensus 93 ~~il~~l---------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 93 AAILTNL---------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HHHHHT-----------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HHHHHhc---------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1122211 2455777788876311 111110 011112 2
Q ss_pred eEEEEeechhhhhc----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhh
Q 045843 287 KVVFACIFRNICGQ----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLA 359 (913)
Q Consensus 287 ~iivTTR~~~v~~~----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~ 359 (913)
-|=.|||...+... .....+++.++.+|-.++..+.+..- ..+--++.+.+|+++|.|-|--+.-+-+.++
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l--~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL--NIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT--T-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh--CCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34478888777554 44567899999999999998876543 3334467899999999999965555444433
No 35
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.81 E-value=4.4e-08 Score=110.03 Aligned_cols=177 Identities=14% Similarity=0.173 Sum_probs=110.7
Q ss_pred CccccccchHHHHHH---HHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKM---LQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~---l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 233 (913)
..+.+++|++..+.. +.+++.......+.++|++|+||||+|+.+++... ..| +.++....-.+-.+.++
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~~-----~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--APF-----EALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE-----EEEecccccHHHHHHHH
Confidence 445678899988766 88888777778899999999999999999998765 333 33332211111111222
Q ss_pred HHccCCccCCChHHHHHHHHHH-HccCCeEEEEeCCCCccc--cccccCCCCCCCceEEEE--eechhhh--hc---CCc
Q 045843 234 KRLDLRAEDHNIDQRADMISEE-LKDKSYVLFLDEVSTEIN--LRDIGIHDEHKNGKVVFA--CIFRNIC--GQ---IDE 303 (913)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~--~~~~~~~~~~~~s~iivT--TR~~~v~--~~---~~~ 303 (913)
+ ..... ..+++.+|++||++.... .+.+ .+.-..+..+++. |.+.... .. ...
T Consensus 82 ~----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~L-L~~le~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 82 E----------------EARQRRSAGRRTILFIDEIHRFNKAQQDAL-LPHVEDGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred H----------------HHHHhhhcCCceEEEEechhhhCHHHHHHH-HHHhhcCcEEEEEeCCCChhhhccHHHhccce
Confidence 1 12111 246889999999997532 2222 2222235555553 3332211 11 446
Q ss_pred eEEcccCChHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHhCCcHHHHHHHHHH
Q 045843 304 EVNVQRLSGKDAQKLFWETVGVQLKDC-RDIKPVARLIINECGGMPHMIKLIGSS 357 (913)
Q Consensus 304 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~~~~~~~~I~~~c~GlPlai~~~~~~ 357 (913)
.+.+.+++.++.++++.+.+....... +-.++....|++.|+|.|..+..+...
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 899999999999999998764321111 334567888999999999766554433
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=1.9e-09 Score=117.97 Aligned_cols=88 Identities=22% Similarity=0.161 Sum_probs=54.2
Q ss_pred HHHhcCCcccEEeccCCccc-----ccCccccCccCcceeecCCccCcc-------ccChhhhccccCCEEecCCCcCC-
Q 045843 546 SFFGYMCSLQLLDLHDTKIK-----LLPSSISSLTNLKALFLNNCCQLM-------RLPAEVGDLHNLEILDLSHTGIC- 612 (913)
Q Consensus 546 ~~f~~l~~Lr~LdLs~~~i~-----~lp~~i~~L~~L~~L~L~~c~~l~-------~lP~~i~~L~~L~~L~L~~~~~~- 612 (913)
..|..+.+|++|+++++.++ .++..+...++|++|+++++ .+. .++..+.++++|+.|++++|.+.
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 44566777888888887763 35566667777888888774 333 23455677778888888887773
Q ss_pred cCCCcc-ccccccccccccceeecccc
Q 045843 613 CLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 613 ~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
..+..+ .+. .. ++|++|++..+
T Consensus 96 ~~~~~~~~l~---~~-~~L~~L~ls~~ 118 (319)
T cd00116 96 DGCGVLESLL---RS-SSLQELKLNNN 118 (319)
T ss_pred hHHHHHHHHh---cc-CcccEEEeeCC
Confidence 233222 222 00 14777766654
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.76 E-value=1.3e-07 Score=97.16 Aligned_cols=152 Identities=10% Similarity=0.123 Sum_probs=96.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHcc
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKD 258 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 258 (913)
...+.+.++|++|+|||+|++.+++... .+...+.|+.++... ..... +.+.++
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~y~~~~~~~---~~~~~--------------------~~~~~~- 90 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYL--LNQRTAIYIPLSKSQ---YFSPA--------------------VLENLE- 90 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEeeHHHhh---hhhHH--------------------HHhhcc-
Confidence 3446789999999999999999999875 233445677664210 00001 111121
Q ss_pred CCeEEEEeCCCCc---cccccccCC----CCCCCceEEEEeech----------hhhhc--CCceEEcccCChHHHHHHH
Q 045843 259 KSYVLFLDEVSTE---INLRDIGIH----DEHKNGKVVFACIFR----------NICGQ--IDEEVNVQRLSGKDAQKLF 319 (913)
Q Consensus 259 kr~LlVlDdv~~~---~~~~~~~~~----~~~~~s~iivTTR~~----------~v~~~--~~~~~~l~~L~~~~~~~Lf 319 (913)
+.-+||+||+|.. ..|+...+. ....|..+||+|.+. .+... .+..++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 3459999999974 345532111 223455665555443 33333 4568999999999999999
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHh
Q 045843 320 WETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSL 358 (913)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l 358 (913)
++.+... .-.--+++..-|++++.|..-++..+-..|
T Consensus 171 ~~~a~~~--~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQR--GIELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9988753 233446788889999988776555544433
No 38
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.75 E-value=1.3e-06 Score=87.41 Aligned_cols=220 Identities=15% Similarity=0.198 Sum_probs=128.4
Q ss_pred cCccccccchHHHHHHHHHHH-----hcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHH
Q 045843 156 AKKMEEVPSLNKHLKMLQECL-----RNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQE 230 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L-----~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~ 230 (913)
+..+.+|+|.++.++.+-=++ .+..+..+-++|++|.||||||..+++...+. +.. +-........-+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k~----tsGp~leK~gDla 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LKI----TSGPALEKPGDLA 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eEe----cccccccChhhHH
Confidence 445668899999888876555 34567899999999999999999999998732 211 1111111111122
Q ss_pred HHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc---------ccccccCC---CCCCCce-----------
Q 045843 231 VLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI---------NLRDIGIH---DEHKNGK----------- 287 (913)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------~~~~~~~~---~~~~~s~----------- 287 (913)
.|+..+. ..=++.+|++.... ..+++.+- ..+.++|
T Consensus 96 aiLt~Le---------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 96 AILTNLE---------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred HHHhcCC---------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 2222222 23356667665421 11221110 2233343
Q ss_pred EEEEeechhhhhc----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhc---
Q 045843 288 VVFACIFRNICGQ----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLAN--- 360 (913)
Q Consensus 288 iivTTR~~~v~~~----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~--- 360 (913)
|=.|||...+... .+.+.+++-.+.+|-.+...+.+..- ...--++-+.+|+++..|-|--+.-+-+.++.
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l--~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL--GIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQ 232 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh--CCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 3379998877655 66788999999999999999887432 22334568899999999999655544444331
Q ss_pred ---C--CChHHHHHHHHhhcCCCCCCCCch-HHHHHHHHHhccCCchhHHH
Q 045843 361 ---V--SNPAIWRDMLSQLRSPSMAPKQEL-EEVYKSFKLVCDKLPSDKQL 405 (913)
Q Consensus 361 ---~--~~~~~w~~~~~~l~~~~~~~~~~~-~~i~~~l~~sy~~L~~~~k~ 405 (913)
. -+...-..+++.+.. ........ ..+..++--.|+.-|--++.
T Consensus 233 V~~~~~I~~~ia~~aL~~L~V-d~~GLd~~D~k~L~~li~~f~GgPVGl~t 282 (332)
T COG2255 233 VKGDGDIDRDIADKALKMLDV-DELGLDEIDRKYLRALIEQFGGGPVGLDT 282 (332)
T ss_pred HhcCCcccHHHHHHHHHHhCc-ccccccHHHHHHHHHHHHHhCCCCccHHH
Confidence 1 223333344444443 22222222 23445555555555544443
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=6.3e-09 Score=113.78 Aligned_cols=86 Identities=22% Similarity=0.147 Sum_probs=57.8
Q ss_pred CCCceeEEeeccCcccc-----CchHHHhcCCcccEEeccCCcccc-------cCccccCccCcceeecCCccCccccCh
Q 045843 526 KCCRILTLLLQESSLAE-----LPASFFGYMCSLQLLDLHDTKIKL-------LPSSISSLTNLKALFLNNCCQLMRLPA 593 (913)
Q Consensus 526 ~~~~Lr~L~l~~~~l~~-----l~~~~f~~l~~Lr~LdLs~~~i~~-------lp~~i~~L~~L~~L~L~~c~~l~~lP~ 593 (913)
.+.+|+.|++.++.++. ++. .+...+.|+.|+++++.+.. ++..+.++.+|++|++++|......+.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 44557888888876532 222 23566778888888776552 334566778888888888655445566
Q ss_pred hhhcccc---CCEEecCCCcCC
Q 045843 594 EVGDLHN---LEILDLSHTGIC 612 (913)
Q Consensus 594 ~i~~L~~---L~~L~L~~~~~~ 612 (913)
.+..+.+ |++|++++|.+.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHHHhccCcccEEEeeCCccc
Confidence 6666655 888888888763
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=2.1e-08 Score=96.49 Aligned_cols=122 Identities=20% Similarity=0.299 Sum_probs=51.2
Q ss_pred hhceeeeccccccCCCCCC-CCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccc-cCccCcceeecCC
Q 045843 507 VANRISLIRMCLSTLPKRP-KCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSI-SSLTNLKALFLNN 584 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i-~~L~~L~~L~L~~ 584 (913)
+.+.|++.+|.+..+.... .+.+|++|++++|.++.+.. |..++.|+.|++++|.|+.+++.+ ..+++|+.|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 5688999999888876654 57889999999998888764 578899999999999999887655 4688999999998
Q ss_pred ccCccccC--hhhhccccCCEEecCCCcCCcCCCcc-----ccccccccccccceeecccc
Q 045843 585 CCQLMRLP--AEVGDLHNLEILDLSHTGICCLPSEI-----DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 585 c~~l~~lP--~~i~~L~~L~~L~L~~~~~~~lp~~i-----~L~~L~~~~~~L~~L~l~~~ 638 (913)
+.+..+- ..++.+++|++|++.+|.+..-+.-- .++ +|+.|+...+
T Consensus 98 -N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP-------~Lk~LD~~~V 150 (175)
T PF14580_consen 98 -NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP-------SLKVLDGQDV 150 (175)
T ss_dssp -S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T-------T-SEETTEET
T ss_pred -CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcC-------hhheeCCEEc
Confidence 6666553 34678899999999999885443311 455 8888876655
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=5.2e-08 Score=93.81 Aligned_cols=117 Identities=23% Similarity=0.314 Sum_probs=39.4
Q ss_pred ccccccCCCCCCCCCceeEEeeccCccccCchHHHh-cCCcccEEeccCCcccccCccccCccCcceeecCCccCccccC
Q 045843 514 IRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFG-YMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLP 592 (913)
Q Consensus 514 ~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~-~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP 592 (913)
..+.++..+...++.++|.|++.+|.++.+.. ++ .+.+|++|+|++|.|+.++ .+..|.+|++|++++ +.++.++
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~ 80 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSIS 80 (175)
T ss_dssp -------------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-C
T ss_pred cccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccc
Confidence 34556666777778889999999998887654 34 5789999999999999986 488899999999999 7899997
Q ss_pred hhh-hccccCCEEecCCCcCCcCCCccccccccccccccceeecccc
Q 045843 593 AEV-GDLHNLEILDLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 593 ~~i-~~L~~L~~L~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~ 638 (913)
..+ ..+++|++|++++|++..+..--.|. .+++|+.|++.++
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~----~l~~L~~L~L~~N 123 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLS----SLPKLRVLSLEGN 123 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGG----G-TT--EEE-TT-
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHH----cCCCcceeeccCC
Confidence 766 46999999999999996664422222 2338999988876
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.58 E-value=6.6e-06 Score=95.00 Aligned_cols=198 Identities=18% Similarity=0.220 Sum_probs=119.9
Q ss_pred cccchHHHHHHHHHHHhc----CC-CcEEEEECCCCCcHHHHHHHHHHHhccc---CCCc--eEEEEEeCCCCCHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLRN----VG-TKRICIWGPPGVGKTTIMENLHDAIGES---RQFD--FIFWVTVNSEGNIRDIQE 230 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~----~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~i~~ 230 (913)
.+.||++++++|...|.. .. ..++.|+|++|.|||+.++.|.+..... .... ..++|.+..-.+...+..
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq 835 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ 835 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence 467999999999988832 23 3567899999999999999998776421 1222 356676666677888999
Q ss_pred HHHHHccCCccC--CChHHHHHHHHHHHc---cCCeEEEEeCCCCccc-ccc-c----cCCCCCCCceEEE--Eeechhh
Q 045843 231 VLLKRLDLRAED--HNIDQRADMISEELK---DKSYVLFLDEVSTEIN-LRD-I----GIHDEHKNGKVVF--ACIFRNI 297 (913)
Q Consensus 231 ~i~~~l~~~~~~--~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~-~~~-~----~~~~~~~~s~iiv--TTR~~~v 297 (913)
.|.+++...... ....+....+...+. +...+||||||+.... -+. + ..+ ...+++|+| +|...+.
T Consensus 836 vI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~-~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 836 VLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP-TKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh-hccCCeEEEEEecCchhc
Confidence 999988544332 223344455555442 2345899999986431 111 1 112 234555444 3332221
Q ss_pred hh--------c-CCceEEcccCChHHHHHHHHHHhCCCC--CCCCChHHHHHHHHHHhCCcHHHHHHHHHHhh
Q 045843 298 CG--------Q-IDEEVNVQRLSGKDAQKLFWETVGVQL--KDCRDIKPVARLIINECGGMPHMIKLIGSSLA 359 (913)
Q Consensus 298 ~~--------~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~ 359 (913)
.. . ....+...|++.++-.+++.+++.... -....++-+|+.++...|-.=.|+.++-.+..
T Consensus 915 perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 915 PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 11 1 223467799999999999999886421 11122333444444444445566666655543
No 43
>PRK04195 replication factor C large subunit; Provisional
Probab=98.55 E-value=7.5e-06 Score=93.98 Aligned_cols=183 Identities=16% Similarity=0.183 Sum_probs=113.6
Q ss_pred CccccccchHHHHHHHHHHHhc----CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRN----VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 232 (913)
..+.+++|.++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ .+-+..+...+... ...+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~~~ 84 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IERV 84 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HHHH
Confidence 3455788999999999999853 2267899999999999999999998864 22 23334444333222 2222
Q ss_pred HHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc------cccccCCCCCCCceEEEEeechh-hhh-c---C
Q 045843 233 LKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN------LRDIGIHDEHKNGKVVFACIFRN-ICG-Q---I 301 (913)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~~~~~~~~~~s~iivTTR~~~-v~~-~---~ 301 (913)
+....... .....++-+||+||++.... +..+.-.....+..||+|+.+.. ... . .
T Consensus 85 i~~~~~~~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 85 AGEAATSG-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred HHHhhccC-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhcc
Confidence 22211100 00113678999999987432 22221111133455666665432 211 1 4
Q ss_pred CceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhc
Q 045843 302 DEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLAN 360 (913)
Q Consensus 302 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~ 360 (913)
...+.+.+++.++....+.+.+... ...--.+....|++.++|..-.+......+..
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~e--gi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~ 208 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKE--GIECDDEALKEIAERSGGDLRSAINDLQAIAE 208 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 5689999999999999888877543 12223567899999999988666554444443
No 44
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=8.6e-06 Score=93.75 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=114.7
Q ss_pred cCccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCC-------------------CceEE
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQ-------------------FDFIF 215 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~-------------------F~~~~ 215 (913)
...+.+++|.+..++.|.+++..+++. .+.++|..|+||||+|+.+.+...-... |...+
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 345667899999999999999876655 4579999999999999998877642211 11122
Q ss_pred EEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHH----HccCCeEEEEeCCCCccc--cccccCC--CCCCCce
Q 045843 216 WVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEE----LKDKSYVLFLDEVSTEIN--LRDIGIH--DEHKNGK 287 (913)
Q Consensus 216 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~--~~~~~~~--~~~~~s~ 287 (913)
++..+.. ...++....+... ..++.-++|||++..... +..+... ......+
T Consensus 92 EIDAas~--------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 92 EMDAASN--------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred Eeccccc--------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 2211111 1122222222211 134667899999998643 4433211 2344677
Q ss_pred EEEEeechhhhhc----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcH-HHHHHHHHHh
Q 045843 288 VVFACIFRNICGQ----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMP-HMIKLIGSSL 358 (913)
Q Consensus 288 iivTTR~~~v~~~----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~~~l 358 (913)
+|+||++..--.. .+..+.++.++.++..+.+.+.+..+ ...--++..+.|++.++|.. -|+..+-..+
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E--gI~id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE--RIAFEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7777776432222 46789999999999999998877543 22234567788999999866 4655544433
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.52 E-value=2.9e-09 Score=115.03 Aligned_cols=118 Identities=31% Similarity=0.444 Sum_probs=77.5
Q ss_pred eeeeccccccCCCCC-CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCc
Q 045843 510 RISLIRMCLSTLPKR-PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQL 588 (913)
Q Consensus 510 ~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l 588 (913)
...++.|.+..+|.. ..|..|..+.+..|.+..+|..+ +++..|.+|||+.|++..+|..++.|+ |+.|-+++ +.+
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKL 155 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-Ccc
Confidence 344555666666544 45566666666666666666665 667777777777777777777676665 77777776 667
Q ss_pred cccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeeccc
Q 045843 589 MRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFI 637 (913)
Q Consensus 589 ~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~ 637 (913)
+.+|..++.+..|..||.+.|.+..+|..+ .|. +|+.|.+..
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~-------slr~l~vrR 198 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT-------SLRDLNVRR 198 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhhchHHhhhHH-------HHHHHHHhh
Confidence 777777776777777777777776666666 555 555554443
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.52 E-value=4.4e-09 Score=109.74 Aligned_cols=161 Identities=13% Similarity=0.154 Sum_probs=109.1
Q ss_pred ccCcceEEecccCCceEeecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCch-HHH
Q 045843 720 FGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSE-EII 798 (913)
Q Consensus 720 l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~-~~l 798 (913)
+..|+.|..++|..+...+-..+.. ..++|+.|.+.++..++........ .+.+.|+.+++..|....+. +. ..-
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~--~~~~L~~l~l~~c~~fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~-tL~sls 368 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQ--HCHNLQVLELSGCQQFSDRGFTMLG-RNCPHLERLDLEECGLITDG-TLASLS 368 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhc--CCCceEEEeccccchhhhhhhhhhh-cCChhhhhhcccccceehhh-hHhhhc
Confidence 4678888888887653322222222 6789999999888876643322221 36788999999998776554 11 233
Q ss_pred hhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccCC-Cc
Q 045843 799 FQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPST-IE 877 (913)
Q Consensus 799 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~-~~ 877 (913)
.++|.|+.|.+++|..+++..-........+...|+.|++.+||.+++-.......+++|+.+++.+|...++=|.. +.
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 46899999999999887765211122344567789999999999887654435667889999999999888776543 21
Q ss_pred -CCCCcce
Q 045843 878 -NASKLRG 884 (913)
Q Consensus 878 -~l~~L~~ 884 (913)
+++++++
T Consensus 449 ~~lp~i~v 456 (483)
T KOG4341|consen 449 THLPNIKV 456 (483)
T ss_pred hhCcccee
Confidence 5555443
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.50 E-value=1.2e-06 Score=90.37 Aligned_cols=165 Identities=12% Similarity=0.150 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCC
Q 045843 164 SLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDH 243 (913)
Q Consensus 164 gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~ 243 (913)
+.+..++.+.+++.......+.|+|+.|+|||+||+.+++... ......+++.++.-.+. ...
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~~---~~~------------ 83 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQA---DPE------------ 83 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHHh---HHH------------
Confidence 3456777887777666677899999999999999999998765 33344556655432110 001
Q ss_pred ChHHHHHHHHHHHccCCeEEEEeCCCCcc---cccc-ccCC---CCCCCceEEEEeechhh---------hhc--CCceE
Q 045843 244 NIDQRADMISEELKDKSYVLFLDEVSTEI---NLRD-IGIH---DEHKNGKVVFACIFRNI---------CGQ--IDEEV 305 (913)
Q Consensus 244 ~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~-~~~~---~~~~~s~iivTTR~~~v---------~~~--~~~~~ 305 (913)
+.+.++ +.-+||+||++... .|.. +... ....+..+|+||+.... ... ....+
T Consensus 84 --------~~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 84 --------VLEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred --------HHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 111122 23489999998743 3332 2111 11234578888885321 111 24689
Q ss_pred EcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHH
Q 045843 306 NVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGS 356 (913)
Q Consensus 306 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~ 356 (913)
++.++++++...++.+.+... ..+--++..+.+++.+.|.|..+.-+..
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~--~~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARR--GLQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 999999999999998754321 1223356677888888888876666543
No 48
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.49 E-value=8.1e-06 Score=95.69 Aligned_cols=199 Identities=15% Similarity=0.123 Sum_probs=117.8
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCc---eEEEEEeCCC---CCHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFD---FIFWVTVNSE---GNIRDIQE 230 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~---~~~~~i~~ 230 (913)
..+.+++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.......+. ..-|+.+... .+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 34556789999999998888766677899999999999999999988765433331 2345554321 12222221
Q ss_pred HH---------------HHHccCCc----------------cC-CC-hHHHHHHHHHHHccCCeEEEEeCCCCc--cccc
Q 045843 231 VL---------------LKRLDLRA----------------ED-HN-IDQRADMISEELKDKSYVLFLDEVSTE--INLR 275 (913)
Q Consensus 231 ~i---------------~~~l~~~~----------------~~-~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~ 275 (913)
.+ +...+... ++ .. ....+..+.+.++++++.++-|+.|.. ..|+
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 11 11111100 00 11 133577888888889999887776654 3355
Q ss_pred cccCC--CCCCCceEEE--Eeechhhhhc----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCc
Q 045843 276 DIGIH--DEHKNGKVVF--ACIFRNICGQ----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 276 ~~~~~--~~~~~s~iiv--TTR~~~v~~~----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 347 (913)
.+... ...+...|++ ||++...... ....+.+.+++.+|.+.++.+.+.... ..--++..+.|.+.+..-
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~--v~ls~eal~~L~~ys~~g 388 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN--VHLAAGVEELIARYTIEG 388 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHCCCcH
Confidence 54322 3333344444 5564432111 334778999999999999999765321 111234555555555444
Q ss_pred HHHHHHHHHH
Q 045843 348 PHMIKLIGSS 357 (913)
Q Consensus 348 Plai~~~~~~ 357 (913)
+-|+..++.+
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 5566555444
No 49
>PTZ00202 tuzin; Provisional
Probab=98.44 E-value=6.5e-05 Score=80.77 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=103.3
Q ss_pred ccccccchHHHHHHHHHHHhcC---CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNV---GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~---~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
+...|+||+.+...+...|.+. ..+++.|.|++|+|||||++.+..... ..+++.... +..++++.|+.
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHHHHH
Confidence 3456889999999999998542 235899999999999999999986553 123333333 67999999999
Q ss_pred HccCCccCCChHHHHHHHHHHH-----c-cCCeEEEEeCCCCccccccc-----cCCCCCCCceEEEEeechhhhhc---
Q 045843 235 RLDLRAEDHNIDQRADMISEEL-----K-DKSYVLFLDEVSTEINLRDI-----GIHDEHKNGKVVFACIFRNICGQ--- 300 (913)
Q Consensus 235 ~l~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~~~~~-----~~~~~~~~s~iivTTR~~~v~~~--- 300 (913)
+||..... .-.++...|.+.+ . +++.+||+- +.+...+..+ .+.....-|+|++----+.....
T Consensus 332 ALGV~p~~-~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~ 409 (550)
T PTZ00202 332 ALGVPNVE-ACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTL 409 (550)
T ss_pred HcCCCCcc-cHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhccc
Confidence 99974322 2233434444333 2 566666654 3444433332 22355667888876555544222
Q ss_pred --CCceEEcccCChHHHHHHHHHHh
Q 045843 301 --IDEEVNVQRLSGKDAQKLFWETV 323 (913)
Q Consensus 301 --~~~~~~l~~L~~~~~~~Lf~~~~ 323 (913)
.-..|.+++++.++|.+.-.+..
T Consensus 410 lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 410 LPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred CccceeEecCCCCHHHHHHHHhhcc
Confidence 34578899999999998877654
No 50
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.4e-07 Score=73.02 Aligned_cols=58 Identities=31% Similarity=0.484 Sum_probs=35.9
Q ss_pred CceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeecCCc
Q 045843 528 CRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFLNNC 585 (913)
Q Consensus 528 ~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L~~c 585 (913)
++|++|++++|.++.+++..|.++++|++|++++|.++.+| ..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35666666666666666666666666666666666666554 34566666666666653
No 51
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.39 E-value=1.9e-05 Score=86.95 Aligned_cols=191 Identities=13% Similarity=0.131 Sum_probs=109.7
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCc-eEEEEEeCCCCCHHHHHHHHH---
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFD-FIFWVTVNSEGNIRDIQEVLL--- 233 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~--- 233 (913)
.+.+++|++..++.+..++..+..+.+.++|+.|+||||+|+.+.+...- ..+. ..+.+.++...+ .....+.
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~--~~~~~~~~~~ 89 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFD--QGKKYLVEDP 89 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhh--cchhhhhcCc
Confidence 34567899999999999998777778899999999999999999887642 1221 233444332110 0000000
Q ss_pred ---HHccCC--ccCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEeechh-hh
Q 045843 234 ---KRLDLR--AEDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFACIFRN-IC 298 (913)
Q Consensus 234 ---~~l~~~--~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTTR~~~-v~ 298 (913)
..++.. ......+.....++..- .+.+-+||+||+..... ...+. +......+++|+||.... +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 000000 00011111111111111 13456899999976432 11121 112334567777775432 22
Q ss_pred hc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 299 GQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 299 ~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
.. ....+.+.+++.++....+.+.+... ...--.+....+++.++|.+-.+..
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~--~~~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAE--GVDYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 21 44578899999999999988876443 1223466788899999988755444
No 52
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.3e-05 Score=88.41 Aligned_cols=190 Identities=14% Similarity=0.095 Sum_probs=107.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.+.+.+..++++ .+.++|+.|+||||+|+.+.+........... .+.....-.++.....-.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c~~~~~~~~~d 89 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIICKEIEKGLCLD 89 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHHHHHhcCCCCc
Confidence 44567889999999999998776655 56899999999999999999876421111000 000000000000000000
Q ss_pred ---ccCCccCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCccc--cccccCC--CCCCCceEEEEeec-hhhhhc--
Q 045843 236 ---LDLRAEDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEIN--LRDIGIH--DEHKNGKVVFACIF-RNICGQ-- 300 (913)
Q Consensus 236 ---l~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~--~~~~~~~--~~~~~s~iivTTR~-~~v~~~-- 300 (913)
+... .....++. ..+.+.+ .+++-++|+|++..... ++.+.-. ......++|++|.+ ..+...
T Consensus 90 ~~~~~~~-~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 90 LIEIDAA-SRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred eEEeccc-ccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 0000 00111111 1122221 24566999999987542 3333111 23345566666644 333222
Q ss_pred -CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 301 -IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 301 -~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
....+++.+++.++..+.+.+.+... ...--++....|++.++|.|-.+..
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~--g~~i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKE--SIDTDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 45789999999999998888766443 1223356778899999998854433
No 53
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.6e-05 Score=85.06 Aligned_cols=195 Identities=17% Similarity=0.211 Sum_probs=130.3
Q ss_pred ccchHHHHHHHHHHHh----cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHcc
Q 045843 162 VPSLNKHLKMLQECLR----NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLD 237 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 237 (913)
+.+|+++++++...|. +....-+.|+|.+|+|||+.++.|....+....=...++|.+-...+...++..|+.+++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 5699999999998873 344445999999999999999999988874322222789999999999999999999996
Q ss_pred CC-ccCCChHHHHHHHHHHHc--cCCeEEEEeCCCCccccc--c----ccCCCCCCCceEE--EEeechhh--------h
Q 045843 238 LR-AEDHNIDQRADMISEELK--DKSYVLFLDEVSTEINLR--D----IGIHDEHKNGKVV--FACIFRNI--------C 298 (913)
Q Consensus 238 ~~-~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~--~----~~~~~~~~~s~ii--vTTR~~~v--------~ 298 (913)
.. ..+....+....+.+.+. ++.++||||+++....-. . +..+... .++|+ ..+.+... .
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~-~~~v~vi~i~n~~~~~~~ld~rv~ 177 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN-KVKVSIIAVSNDDKFLDYLDPRVK 177 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc-ceeEEEEEEeccHHHHHHhhhhhh
Confidence 32 334667777778888775 588999999998753321 1 1222222 45433 33333322 1
Q ss_pred hc-CCceEEcccCChHHHHHHHHHHhCCC---CCCCCChHHH-HHHHHHHhCCcHHHHHHHHHH
Q 045843 299 GQ-IDEEVNVQRLSGKDAQKLFWETVGVQ---LKDCRDIKPV-ARLIINECGGMPHMIKLIGSS 357 (913)
Q Consensus 299 ~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~---~~~~~~~~~~-~~~I~~~c~GlPlai~~~~~~ 357 (913)
.. ....+..+|.+.+|-...+..++... ..-.++.-++ +...++..|-.=.||.++-++
T Consensus 178 s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 178 SSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred hccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 11 34558899999999999999988643 2222333333 444444444444566554433
No 54
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.37 E-value=8.8e-07 Score=91.00 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=64.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC--CCHHHHHHHHHHHccCCccC-CCh------HHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE--GNIRDIQEVLLKRLDLRAED-HNI------DQRAD 250 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~-~~~------~~~~~ 250 (913)
.-..++|+|++|+|||||++.++++.... +|+..+|++++.. +++.++++.+...+-...-+ ... .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34589999999999999999999988755 8999999998877 79999999993333211111 111 11222
Q ss_pred HHHHH-HccCCeEEEEeCCCCc
Q 045843 251 MISEE-LKDKSYVLFLDEVSTE 271 (913)
Q Consensus 251 ~l~~~-l~~kr~LlVlDdv~~~ 271 (913)
....+ -++++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 22222 2489999999998864
No 55
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=9.1e-06 Score=88.18 Aligned_cols=180 Identities=16% Similarity=0.198 Sum_probs=108.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCc-eEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFD-FIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.++.++.|..++.....+.+-++|++|+||||+|+.+++...- ..|. ..+-+..+....... .+.+++.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~~-vr~~i~~ 87 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGIDV-VRNKIKM 87 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHHH-HHHHHHH
Confidence 445677899999999988888777777889999999999999999987631 2222 122222233222222 1222211
Q ss_pred ccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEeech-hhhhc---CCceEEc
Q 045843 236 LDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFACIFR-NICGQ---IDEEVNV 307 (913)
Q Consensus 236 l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTTR~~-~v~~~---~~~~~~l 307 (913)
+...... .-.++.-++|+||++.... ...+. .......+++|+++... .+... ....+++
T Consensus 88 ~~~~~~~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 88 FAQKKVT------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred HHhcccc------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 1100000 0024567999999987532 11111 01223456677766543 22211 4568999
Q ss_pred ccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHH
Q 045843 308 QRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIK 352 (913)
Q Consensus 308 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 352 (913)
+++++++....+.+.+... ...--++....|++.++|..-.+.
T Consensus 156 ~~l~~~~l~~~L~~i~~~e--gi~i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAE--KVPYVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 9999999999998877543 122235677889999998874443
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=6.6e-06 Score=96.60 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=112.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcEE-EEECCCCCcHHHHHHHHHHHhcccCC-------------------CceEEE
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKRI-CIWGPPGVGKTTIMENLHDAIGESRQ-------------------FDFIFW 216 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi-~I~G~gG~GKTtLa~~v~~~~~~~~~-------------------F~~~~w 216 (913)
..+.+++|.+..++.|.+++..+++... .++|+.|+||||+|+.+++...-... |.-.++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 4556788999999999999988777764 79999999999999999987642211 111111
Q ss_pred EEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHH-HHccCCeEEEEeCCCCcc--ccccccCC--CCCCCceEEEE
Q 045843 217 VTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISE-ELKDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGKVVFA 291 (913)
Q Consensus 217 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~iivT 291 (913)
+..+....+.. +.++...+.. -..+++-++|+|++.... .++.+.-. ......++|++
T Consensus 93 idAas~~kVDd-----------------IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 93 VDAASRTKVDD-----------------TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred eccccccCHHH-----------------HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 21110011111 1122222211 124678899999998753 23332111 22334555555
Q ss_pred ee-chhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH-HHHHHHHHh
Q 045843 292 CI-FRNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH-MIKLIGSSL 358 (913)
Q Consensus 292 TR-~~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~~l 358 (913)
|. ...+..- ....|++++|+.++..+.+.+.+... ....-.+....|++.++|.|- |+..+-..+
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E--gI~~edeAL~lIA~~S~Gd~R~ALnLLdQal 225 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE--QLPFEAEALTLLAKAANGSMRDALSLTDQAI 225 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44 4444322 46789999999999999998876442 222345677889999999885 444433333
No 57
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=3.3e-05 Score=88.19 Aligned_cols=178 Identities=16% Similarity=0.127 Sum_probs=110.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCC-------------------CceEEE
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQ-------------------FDFIFW 216 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~-------------------F~~~~w 216 (913)
..+.+++|.+...+.|.+++..++.. .+.++|+.|+||||+|+.+.+...-... |.-.+.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 45667899999999999999877654 6689999999999999999877642111 111111
Q ss_pred EEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHH-HHHccCCeEEEEeCCCCcc--ccccccCC--CCCCCceEEEE
Q 045843 217 VTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMIS-EELKDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGKVVFA 291 (913)
Q Consensus 217 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~iivT 291 (913)
+..+....+.+ +.++...+. .-..+++-++|+|++.... .+..+.-. ....+.++|++
T Consensus 92 IDAAs~~~Vdd-----------------IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 92 IDAASRTKVED-----------------TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred ecccccCCHHH-----------------HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 11111111111 111111111 1123677899999998753 23222111 22345677777
Q ss_pred eech-hhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 292 CIFR-NICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 292 TR~~-~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
|.+. .+... ....+++++++.++..+.+.+.+... ...--.+....|++.++|.+-.+..
T Consensus 155 Ttd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE--gI~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 155 TTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKE--QIAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred ECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 7553 33221 56789999999999999998877543 2233456778899999998854443
No 58
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=8.6e-08 Score=95.58 Aligned_cols=127 Identities=23% Similarity=0.270 Sum_probs=107.0
Q ss_pred CHHhhhhhceeeeccccccCCCCC-CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcce
Q 045843 501 SEEEWEVANRISLIRMCLSTLPKR-PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKA 579 (913)
Q Consensus 501 ~~~~~~~~~~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~ 579 (913)
.+..|+.+..+++++|.+..+..+ .-.+.+|.|++++|.+..+.. +..+++|..||||+|.++.+-.+=.+|-|.+.
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 456789999999999999888766 567899999999998887765 58899999999999999988777778899999
Q ss_pred eecCCccCccccChhhhccccCCEEecCCCcCCcCC--Ccc-ccccccccccccceeecccc
Q 045843 580 LFLNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLP--SEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 580 L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp--~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
|.|++ +.+..+. .+++|.+|.+||+++|++..+. .+| +|+ .|+++.+.++
T Consensus 357 L~La~-N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-------CLE~l~L~~N 409 (490)
T KOG1259|consen 357 LKLAQ-NKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-------CLETLRLTGN 409 (490)
T ss_pred eehhh-hhHhhhh-hhHhhhhheeccccccchhhHHHhccccccc-------HHHHHhhcCC
Confidence 99999 6787774 6999999999999999985543 233 666 8888887776
No 59
>PF13173 AAA_14: AAA domain
Probab=98.34 E-value=1.6e-06 Score=80.25 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=76.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKS 260 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 260 (913)
-+++.|.|+-|+||||++++++.+.. .....+++...+......... + ..+.+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP---------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh---------------h-hHHHHHHhhccCC
Confidence 36899999999999999999998764 334556666554322110000 0 2223333334478
Q ss_pred eEEEEeCCCCccccccccCC--CCCCCceEEEEeechhhhhc--------CCceEEcccCChHH
Q 045843 261 YVLFLDEVSTEINLRDIGIH--DEHKNGKVVFACIFRNICGQ--------IDEEVNVQRLSGKD 314 (913)
Q Consensus 261 ~LlVlDdv~~~~~~~~~~~~--~~~~~s~iivTTR~~~v~~~--------~~~~~~l~~L~~~~ 314 (913)
.+|+||++....+|...... +.....+||+|+.+...... ....++|.||+-.|
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 89999999998888765322 44457899999998766532 22467899998766
No 60
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.32 E-value=4.9e-06 Score=85.61 Aligned_cols=173 Identities=11% Similarity=0.196 Sum_probs=110.6
Q ss_pred cccccchHHHHH---HHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 159 MEEVPSLNKHLK---MLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 159 ~~~~~gr~~~~~---~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.||.+..+. -|.+++..+.++-+.+||++|+||||||+.+.+..+... .-||..|....-..-.++|+++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 345566665543 344555778899999999999999999999998776333 4567766654333333344333
Q ss_pred ccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc-ccccccCCCCCCCceEEE--Eeechhhhhc-----CCceEEc
Q 045843 236 LDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI-NLRDIGIHDEHKNGKVVF--ACIFRNICGQ-----IDEEVNV 307 (913)
Q Consensus 236 l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~~~~s~iiv--TTR~~~v~~~-----~~~~~~l 307 (913)
-. =...+.++|.+|.+|+|..-. ...++.+|.-.+|.-++| ||-+...--. .+.++.+
T Consensus 213 aq--------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvL 278 (554)
T KOG2028|consen 213 AQ--------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVL 278 (554)
T ss_pred HH--------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEe
Confidence 11 112345789999999998743 344556787777887776 4444332111 5679999
Q ss_pred ccCChHHHHHHHHHHhC---CCCC---CCCC-----hHHHHHHHHHHhCCcHH
Q 045843 308 QRLSGKDAQKLFWETVG---VQLK---DCRD-----IKPVARLIINECGGMPH 349 (913)
Q Consensus 308 ~~L~~~~~~~Lf~~~~~---~~~~---~~~~-----~~~~~~~I~~~c~GlPl 349 (913)
+.|+.++-..++.+... .... .-++ -..+.+-++..|.|-.-
T Consensus 279 ekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 279 EKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 99999999999988442 2111 1111 22455667777888753
No 61
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=5.2e-06 Score=94.45 Aligned_cols=198 Identities=15% Similarity=0.129 Sum_probs=113.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcE-EEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKR-ICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.|..++....... +.++|++|+||||+|+.+++.....+.+....|.|.+.. .+..-....+..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~e 89 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVLE 89 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceEE
Confidence 345567899999999999987776654 599999999999999999987753332322223222110 000000000000
Q ss_pred ccCCccCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCcc--ccccccCC--CCCCCceEEEEee-chhhhhc---CC
Q 045843 236 LDLRAEDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGKVVFACI-FRNICGQ---ID 302 (913)
Q Consensus 236 l~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~iivTTR-~~~v~~~---~~ 302 (913)
++.. .....+.. ..+.+.+ .+++-++|+|+++... .+..+.-. .....+.+|++|. ...+... ..
T Consensus 90 l~~~-~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 90 IDAA-SNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred eccc-ccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 0110 01112221 1222222 3567799999998643 23333111 2223445555443 4444222 45
Q ss_pred ceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH-HHHHHHHHhh
Q 045843 303 EEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH-MIKLIGSSLA 359 (913)
Q Consensus 303 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~~l~ 359 (913)
..+++.+++.++..+.+.+.+... ....-++....|++.++|.+- |+..+-.++.
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~e--gi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAE--GREAEPEALQLVARLADGAMRDAESLLERLLA 223 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 689999999999999999877543 122245678899999999985 4444444433
No 62
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.31 E-value=1.8e-06 Score=92.20 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=63.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC--CHHHHHHHHHHHccCCccCCChHH------HHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG--NIRDIQEVLLKRLDLRAEDHNIDQ------RADMIS 253 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~~------~~~~l~ 253 (913)
....|+|++|+||||||+.||+..... +|+..+||.+++.+ ++.++++.|...+-....+..... ..-...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999999998855 89999999999987 788888888632211111111111 111122
Q ss_pred HH--HccCCeEEEEeCCCCc
Q 045843 254 EE--LKDKSYVLFLDEVSTE 271 (913)
Q Consensus 254 ~~--l~~kr~LlVlDdv~~~ 271 (913)
+. -.|++.+|++|++...
T Consensus 249 e~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHcCCCEEEEEEChHHH
Confidence 22 2589999999998753
No 63
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.30 E-value=1.8e-06 Score=80.44 Aligned_cols=114 Identities=24% Similarity=0.348 Sum_probs=79.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhccc---CCCceEEEEEeCCCCCHHHHHHHHHHHccCCccC-CChHHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGES---RQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAED-HNIDQRADMISEEL 256 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~l 256 (913)
-+.+.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...|+++++..... .+.+++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4688999999999999999999876411 0134567999888889999999999999987766 66777888888888
Q ss_pred ccCCe-EEEEeCCCCc-c--ccccccCCCCCCCceEEEEeec
Q 045843 257 KDKSY-VLFLDEVSTE-I--NLRDIGIHDEHKNGKVVFACIF 294 (913)
Q Consensus 257 ~~kr~-LlVlDdv~~~-~--~~~~~~~~~~~~~s~iivTTR~ 294 (913)
...+. +||+||+... . .++.+..-....+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 76554 9999999875 2 1112211123666777776654
No 64
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.9e-05 Score=85.56 Aligned_cols=172 Identities=13% Similarity=0.142 Sum_probs=110.4
Q ss_pred ccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhc----ccCCCceEEEEE-eCCCCCHHHHHHHHH
Q 045843 160 EEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIG----ESRQFDFIFWVT-VNSEGNIRDIQEVLL 233 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~----~~~~F~~~~wv~-vs~~~~~~~i~~~i~ 233 (913)
.+++|.+..++.+.+++..+..+ ...++|+.|+||||+|+.++...- ...|+|...|.. -+....++.+. ++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHH
Confidence 45689999999999999776655 568999999999999999998642 235667666654 23333333322 222
Q ss_pred HHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCC--cccccccc--CCCCCCCceEEEEeechhhhhc----CCceE
Q 045843 234 KRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVST--EINLRDIG--IHDEHKNGKVVFACIFRNICGQ----IDEEV 305 (913)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~~--~~~~~~~s~iivTTR~~~v~~~----~~~~~ 305 (913)
+.+... -..+++-++|+|++.. ...+..+. +.....++.+|++|.+.+.... .+..+
T Consensus 83 ~~~~~~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 83 EEVNKK---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred HHHhcC---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 222111 1124666777777654 33454442 1244567888888865543211 56789
Q ss_pred EcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 306 NVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 306 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
.+.+++.++....+.+.... .-++.++.++..++|.|.-+..
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 148 KLNRLSKEEIEKFISYKYND------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eCCCcCHHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHH
Confidence 99999999998888665421 1134467889999999865543
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=4.7e-06 Score=79.28 Aligned_cols=121 Identities=21% Similarity=0.235 Sum_probs=74.1
Q ss_pred cchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccC
Q 045843 163 PSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAED 242 (913)
Q Consensus 163 ~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~ 242 (913)
.|++..+..+...+.......+.|+|++|+||||+++.+++... ..-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 37888999999988776678999999999999999999998875 222345666655543322221111100
Q ss_pred CChHHHHHHHHHHHccCCeEEEEeCCCCcc-----ccccc-cCCC----CCCCceEEEEeechh
Q 045843 243 HNIDQRADMISEELKDKSYVLFLDEVSTEI-----NLRDI-GIHD----EHKNGKVVFACIFRN 296 (913)
Q Consensus 243 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----~~~~~-~~~~----~~~~s~iivTTR~~~ 296 (913)
............++.+||+||++... .+... .... ...+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00111112234578899999999641 11111 1111 146788888887654
No 66
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=1.4e-06 Score=103.03 Aligned_cols=90 Identities=26% Similarity=0.354 Sum_probs=80.0
Q ss_pred ceeEEeeccCccccCchHHHhcCCcccEEeccCCccc-ccCccccCccCcceeecCCccCccccChhhhccccCCEEecC
Q 045843 529 RILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIK-LLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEILDLS 607 (913)
Q Consensus 529 ~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~-~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~L~ 607 (913)
.++.|+|++|.+....+..|..+++|+.|+|++|.+. .+|..++++.+|++|+|++|.....+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999887654555699999999999999998 899999999999999999965556899999999999999999
Q ss_pred CCcC-CcCCCcc
Q 045843 608 HTGI-CCLPSEI 618 (913)
Q Consensus 608 ~~~~-~~lp~~i 618 (913)
+|.+ ..+|..+
T Consensus 499 ~N~l~g~iP~~l 510 (623)
T PLN03150 499 GNSLSGRVPAAL 510 (623)
T ss_pred CCcccccCChHH
Confidence 9998 7888876
No 67
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.29 E-value=7.2e-05 Score=81.69 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=107.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEe--CCCCCHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTV--NSEGNIRDIQEVLLK 234 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~ 234 (913)
..+.+++|+++.++.+..++.....+.+.++|+.|+||||+|+.+.+...... +. ..++.+ +.......+...+ .
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~-~~~i~~~~~~~~~~~~~~~~i-~ 90 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WR-ENFLELNASDERGIDVIRNKI-K 90 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cc-cceEEeccccccchHHHHHHH-H
Confidence 34556789999999999999887777889999999999999999998764221 21 122222 2222211111111 1
Q ss_pred HccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEeech-hhhhc---CCceEE
Q 045843 235 RLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFACIFR-NICGQ---IDEEVN 306 (913)
Q Consensus 235 ~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTTR~~-~v~~~---~~~~~~ 306 (913)
.+....+ .....+-+|++|++..... ...+. .......+.+|+++... .+... ....++
T Consensus 91 ~~~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 91 EFARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred HHHhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 1100000 0012456899999876422 22221 11223446777776432 22111 445789
Q ss_pred cccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 307 VQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 307 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
+.+++.++....+.+.+... ...--++....+++.++|.+--+..
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~--~~~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENE--GIEITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 99999999988888877543 2223456788999999999855433
No 68
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.28 E-value=9e-06 Score=96.11 Aligned_cols=169 Identities=18% Similarity=0.318 Sum_probs=102.8
Q ss_pred cCccccccchHHHHH---HHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-CCHHHHHHH
Q 045843 156 AKKMEEVPSLNKHLK---MLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE-GNIRDIQEV 231 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~---~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~ 231 (913)
+..+.+++|.+..+. .+.+.+.......+.++|++|+||||+|+.+++... .+|. .++.. ..+.+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~-----~lna~~~~i~d---- 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFS-----SLNAVLAGVKD---- 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccce-----eehhhhhhhHH----
Confidence 345567889998874 466677777778889999999999999999998765 4442 11111 01111
Q ss_pred HHHHccCCccCCChHHHHHHHHHHH--ccCCeEEEEeCCCCcc--ccccccCCCCCCCceEEEEeechh----hhhc---
Q 045843 232 LLKRLDLRAEDHNIDQRADMISEEL--KDKSYVLFLDEVSTEI--NLRDIGIHDEHKNGKVVFACIFRN----ICGQ--- 300 (913)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~--~~~~~~~~~~~~~s~iivTTR~~~----v~~~--- 300 (913)
..+......+.+ .+++.+|||||++... .++.+ .+.-..|+.++++++.+. +...
T Consensus 93 -------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaL-L~~lE~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 93 -------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDAL-LPWVENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred -------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHH-HHHhcCceEEEEEecCCChHhhhhhHhhc
Confidence 111112222222 2467899999998643 23332 222234555555433322 1111
Q ss_pred CCceEEcccCChHHHHHHHHHHhCCC-----CCCCCChHHHHHHHHHHhCCcHH
Q 045843 301 IDEEVNVQRLSGKDAQKLFWETVGVQ-----LKDCRDIKPVARLIINECGGMPH 349 (913)
Q Consensus 301 ~~~~~~l~~L~~~~~~~Lf~~~~~~~-----~~~~~~~~~~~~~I~~~c~GlPl 349 (913)
....+.+++|+.++...++.+.+... .....--++....|++.+.|.--
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 35689999999999999998876421 11122335677888888888753
No 69
>PRK08727 hypothetical protein; Validated
Probab=98.27 E-value=1.6e-05 Score=81.84 Aligned_cols=165 Identities=11% Similarity=0.063 Sum_probs=100.3
Q ss_pred cccccch-HHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHcc
Q 045843 159 MEEVPSL-NKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLD 237 (913)
Q Consensus 159 ~~~~~gr-~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 237 (913)
+..|++. ...+..+.....+.....+.|+|+.|+|||+|++.+++... ++...+.|+.+.+ ....+.+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~~~------~~~~~~~--- 86 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPLQA------AAGRLRD--- 86 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeHHH------hhhhHHH---
Confidence 3444433 33344443333344446799999999999999999998765 3334556665432 1111110
Q ss_pred CCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc---ccccccCC----CCCCCceEEEEeechhh---------hhc-
Q 045843 238 LRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI---NLRDIGIH----DEHKNGKVVFACIFRNI---------CGQ- 300 (913)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~~~~~----~~~~~s~iivTTR~~~v---------~~~- 300 (913)
.+ +.+ .+.-+||+||+.... .|....+. ...+|..||+|++...- ...
T Consensus 87 -------------~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 87 -------------AL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred -------------HH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 11 111 234599999997542 33322222 12346679999985221 111
Q ss_pred -CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHH
Q 045843 301 -IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMI 351 (913)
Q Consensus 301 -~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 351 (913)
....+.+++++.++-.+++.+++... .-.--++...-|++.++|-.-.+
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~--~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRR--GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhCCCCHHHH
Confidence 35689999999999999999876542 22334567788899988776554
No 70
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=3.9e-05 Score=86.63 Aligned_cols=185 Identities=16% Similarity=0.188 Sum_probs=108.4
Q ss_pred cCccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCC-------------------CceEE
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQ-------------------FDFIF 215 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~-------------------F~~~~ 215 (913)
+..+.+++|.+.....|...+..+.++ .+.++|++|+||||+|+.+.+....... +...+
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 345567889999988888888777764 5789999999999999999887542111 00111
Q ss_pred EEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc--ccccccCC--CCCCCceEEEE
Q 045843 216 WVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGKVVFA 291 (913)
Q Consensus 216 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~iivT 291 (913)
.+..+....+..+. .|.+.... .-..+++-++|+|++.... ..+.+.-. .......+|++
T Consensus 90 el~aa~~~gid~iR-~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 90 ELDAASNRGIDEIR-KIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred EEeCcccCCHHHHH-HHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 22221111122111 11111100 0123567799999997642 22222111 11223444444
Q ss_pred eec-hhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCc-HHHHHHHHHHh
Q 045843 292 CIF-RNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGM-PHMIKLIGSSL 358 (913)
Q Consensus 292 TR~-~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~~~~~l 358 (913)
|.+ ..+... ....+.+.+++.++....+.+.+... ...--++....|++.++|. +.|+..+-.+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~e--gi~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAE--GIEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 433 444333 55688999999999999988877543 2223356778899888654 67777776544
No 71
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=3.6e-05 Score=78.49 Aligned_cols=157 Identities=10% Similarity=0.103 Sum_probs=95.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDK 259 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 259 (913)
..+.+.|+|+.|+|||+|++.+++...+ .++... .+...+... +.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~~~--------------------~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAANA--------------------AAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHHHh--------------------hhc-
Confidence 3467999999999999999998876531 133221 111112111 111
Q ss_pred CeEEEEeCCCCcccc-cccc--C-CCCCCCceEEEEeechh---------hhhc--CCceEEcccCChHHHHHHHHHHhC
Q 045843 260 SYVLFLDEVSTEINL-RDIG--I-HDEHKNGKVVFACIFRN---------ICGQ--IDEEVNVQRLSGKDAQKLFWETVG 324 (913)
Q Consensus 260 r~LlVlDdv~~~~~~-~~~~--~-~~~~~~s~iivTTR~~~---------v~~~--~~~~~~l~~L~~~~~~~Lf~~~~~ 324 (913)
-+|++||+...... +.+. + .....|..||+|++... .... ...++++++++.++-.+++++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 27889999754211 1110 0 02345778999987422 1111 567999999999999999999885
Q ss_pred CCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhh------cC-CChHHHHHHHHh
Q 045843 325 VQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLA------NV-SNPAIWRDMLSQ 373 (913)
Q Consensus 325 ~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~------~~-~~~~~w~~~~~~ 373 (913)
.. .-.--+++..-|++.+.|..-++..+-..|. ++ .+....+.+++.
T Consensus 168 ~~--~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 168 DR--QLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred Hc--CCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 43 2233467888899999888866664333331 12 445555555543
No 72
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.23 E-value=2.1e-07 Score=100.89 Aligned_cols=124 Identities=29% Similarity=0.377 Sum_probs=106.5
Q ss_pred hhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCC
Q 045843 505 WEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNN 584 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~ 584 (913)
...++.+++..|.+..+|...-.--|+.|.+++|+++.+|..+ +....|..||.+.|.+.++|..++.|..|+.|+++.
T Consensus 120 L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred hhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh
Confidence 3467778888888888887755566899999999999999887 788899999999999999999999999999999999
Q ss_pred ccCccccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccc
Q 045843 585 CCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 585 c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+.+..+|..++ .-.|..||++.|++..||..+ +|+ .|++|.+..+
T Consensus 199 -n~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~-------~Lq~l~LenN 244 (722)
T KOG0532|consen 199 -NHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMR-------HLQVLQLENN 244 (722)
T ss_pred -hhhhhCCHHHh-CCceeeeecccCceeecchhhhhhh-------hheeeeeccC
Confidence 78888998888 557889999999999999888 888 8888877766
No 73
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1.1e-06 Score=69.19 Aligned_cols=59 Identities=39% Similarity=0.591 Sum_probs=52.1
Q ss_pred CcccEEeccCCcccccCc-cccCccCcceeecCCccCccccCh-hhhccccCCEEecCCCcC
Q 045843 552 CSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCCQLMRLPA-EVGDLHNLEILDLSHTGI 611 (913)
Q Consensus 552 ~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~lP~-~i~~L~~L~~L~L~~~~~ 611 (913)
++|++|++++|+++.+|. .+.++++|++|++++ +.+..+|. .+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 579999999999999985 688999999999998 67777764 689999999999999974
No 74
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=2.3e-05 Score=80.76 Aligned_cols=162 Identities=10% Similarity=0.117 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChH
Q 045843 167 KHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNID 246 (913)
Q Consensus 167 ~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~ 246 (913)
..+..+.++......+.+.|+|+.|+|||+|++.+++... ..-..+.++.+..... ...
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~-------------------~~~ 89 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW-------------------FVP 89 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh-------------------hhH
Confidence 3445555555455567899999999999999999998765 2334456666543100 001
Q ss_pred HHHHHHHHHHccCCeEEEEeCCCCc---cccccccCC----CCCCC-ceEEEEeechhhh---------hc--CCceEEc
Q 045843 247 QRADMISEELKDKSYVLFLDEVSTE---INLRDIGIH----DEHKN-GKVVFACIFRNIC---------GQ--IDEEVNV 307 (913)
Q Consensus 247 ~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~~~~~----~~~~~-s~iivTTR~~~v~---------~~--~~~~~~l 307 (913)
+. .+.+. +.-+|++||+... ..|+...+. ....| .++|+||+...-. .. ...++++
T Consensus 90 ~~----~~~~~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l 164 (235)
T PRK08084 90 EV----LEGME-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 164 (235)
T ss_pred HH----HHHhh-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeee
Confidence 11 11111 1248999999763 345432211 11233 4789999854221 11 4579999
Q ss_pred ccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHH
Q 045843 308 QRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGS 356 (913)
Q Consensus 308 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~ 356 (913)
+++++++-.+++.+++... .-.--+++..-|++.+.|..-++..+-.
T Consensus 165 ~~~~~~~~~~~l~~~a~~~--~~~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLR--GFELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred cCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 9999999999998866432 2334467888889988877655554443
No 75
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.6e-05 Score=90.31 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=109.8
Q ss_pred cCccccccchHHHHHHHHHHHhcCCCcE-EEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHH
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRNVGTKR-ICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
...+.+++|.+..++.|.+++..+++.. +.++|+.|+||||+|+.+.+...-...-. .--+. +..+..-...+.|..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~-~~g~~-~~PCG~C~sC~~I~a 89 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADG-EGGIT-AQPCGQCRACTEIDA 89 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccc-cccCC-CCCCcccHHHHHHHc
Confidence 3455678999999999999998777654 58899999999999999987764211000 00000 000000000111100
Q ss_pred -------HccCCccCCChHHHHHHHHHH----HccCCeEEEEeCCCCcc--ccccccCC--CCCCCceEE-EEeechhhh
Q 045843 235 -------RLDLRAEDHNIDQRADMISEE----LKDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGKVV-FACIFRNIC 298 (913)
Q Consensus 235 -------~l~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~ii-vTTR~~~v~ 298 (913)
.+... ....+++..+.+... ..++.-++|+|++.... .++.+... .-..+.++| +||....+.
T Consensus 90 G~hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 90 GRFVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCCCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 00000 011222222222221 24567799999998753 23332111 222344544 555445553
Q ss_pred hc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 299 GQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 299 ~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
.- .+..+.++.++.++..+.+.+.+..+ ....-.+..+.|++.++|.|.-+..+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~E--gi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEE--GIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 32 56789999999999999988776433 11222455688999999999644443
No 76
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.19 E-value=1.5e-06 Score=98.11 Aligned_cols=92 Identities=38% Similarity=0.540 Sum_probs=62.7
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCC-cccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCE
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMC-SLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEI 603 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~-~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~ 603 (913)
...+.+..|.+.+|.++.+++.. ..+. +|+.|++++|++..+|..++.+++|+.|++++ +.+..+|...+.+.+|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhh
Confidence 44456777777777777666643 3342 67777777777777766677777777777777 567777766667777777
Q ss_pred EecCCCcCCcCCCcc
Q 045843 604 LDLSHTGICCLPSEI 618 (913)
Q Consensus 604 L~L~~~~~~~lp~~i 618 (913)
|++++|.+..+|..+
T Consensus 191 L~ls~N~i~~l~~~~ 205 (394)
T COG4886 191 LDLSGNKISDLPPEI 205 (394)
T ss_pred eeccCCccccCchhh
Confidence 777777777776654
No 77
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.17 E-value=0.00011 Score=89.41 Aligned_cols=298 Identities=15% Similarity=0.182 Sum_probs=173.6
Q ss_pred ccchHHHHHHHHHHHh---cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE---eCCCCC---HHHHHHHH
Q 045843 162 VPSLNKHLKMLQECLR---NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT---VNSEGN---IRDIQEVL 232 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~---~~~i~~~i 232 (913)
++||+.+++.|...+. ...-.++.+.|..|||||+|+++|..... +.+...+--. ...+.. .....+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~--~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPIT--QQRGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHh--ccceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 5799999999998884 34456999999999999999999998765 2221111111 111111 22233333
Q ss_pred HHHc-------------------cCCcc-----------------------CCChHH-----HHHHHHHHH-ccCCeEEE
Q 045843 233 LKRL-------------------DLRAE-----------------------DHNIDQ-----RADMISEEL-KDKSYVLF 264 (913)
Q Consensus 233 ~~~l-------------------~~~~~-----------------------~~~~~~-----~~~~l~~~l-~~kr~LlV 264 (913)
..++ +.... +...+. ....+..+. +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 3332 11110 000111 112223333 34699999
Q ss_pred EeCCCCccc--cccccCC----C--CCCCceEEE--Eeech-hhhh-c--CCceEEcccCChHHHHHHHHHHhCCCCCCC
Q 045843 265 LDEVSTEIN--LRDIGIH----D--EHKNGKVVF--ACIFR-NICG-Q--IDEEVNVQRLSGKDAQKLFWETVGVQLKDC 330 (913)
Q Consensus 265 lDdv~~~~~--~~~~~~~----~--~~~~s~iiv--TTR~~-~v~~-~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 330 (913)
+||+.-.+. .+-+... . .-....|.. |.+.. .... . ....+.+.||+..+.-.+........ .
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~---~ 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT---K 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc---c
Confidence 999854322 1111111 0 001112222 22222 1111 1 45789999999999999999887652 3
Q ss_pred CChHHHHHHHHHHhCCcHHHHHHHHHHhhcC------CChHHHHHHHHhhcCCCCCCCCchHHHHHHHHHhccCCchhHH
Q 045843 331 RDIKPVARLIINECGGMPHMIKLIGSSLANV------SNPAIWRDMLSQLRSPSMAPKQELEEVYKSFKLVCDKLPSDKQ 404 (913)
Q Consensus 331 ~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 404 (913)
....+....|.+|..|.|+-+.-+-..+... .+...|+.=..++.. .+..+.+...+..-.+.||...+
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCHHHH
Confidence 3455688999999999999998888887763 333344443322221 22235566678888999999989
Q ss_pred HHhhhhccccCCccccHHHHHHHHHhcCchhhhcchHHHHHHHHHHHHHHHHhcccccCC------Cccc--c-chhHHH
Q 045843 405 LCLLYWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEARDRGQSILDEFVKKSLLEKGR------KASH--Y-KMFEHF 475 (913)
Q Consensus 405 ~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~------~~~~--~-~mHdlv 475 (913)
.-.-.-|++= -.|+.+.|-..|- .....++...++.|....++-..+ .... | ..||.|
T Consensus 312 ~Vl~~AA~iG--~~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIG--NRFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhC--ccCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 8888888874 3455555554431 134556666677777666664321 1111 2 568888
Q ss_pred HHHHHHH
Q 045843 476 QRAALRI 482 (913)
Q Consensus 476 ~~~a~~i 482 (913)
++.|-..
T Consensus 379 qqaaY~~ 385 (849)
T COG3899 379 QQAAYNL 385 (849)
T ss_pred HHHHhcc
Confidence 8877543
No 78
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=2e-05 Score=87.35 Aligned_cols=190 Identities=16% Similarity=0.135 Sum_probs=110.2
Q ss_pred cCccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHH
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
+..+.+++|.+..+..|..++...++. .+.++|+.|+||||+|+.+++...-...... ..+....+-..+...+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGISS 90 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCCc
Confidence 345567889999999999999887765 5799999999999999999887642111000 011111111111111100
Q ss_pred Hc---cCCc-cC-CChHHHHHHHHHH-HccCCeEEEEeCCCCcc--ccccccCC--CCCCCceEE-EEeechhhhhc---
Q 045843 235 RL---DLRA-ED-HNIDQRADMISEE-LKDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGKVV-FACIFRNICGQ--- 300 (913)
Q Consensus 235 ~l---~~~~-~~-~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~ii-vTTR~~~v~~~--- 300 (913)
.+ .... .+ +++.++...+... ..++.-++|+|++.... .++.+... ........| .||....+...
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 00 0000 00 1122222222211 23567799999998743 34443211 222344444 45544555333
Q ss_pred CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHH
Q 045843 301 IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHM 350 (913)
Q Consensus 301 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 350 (913)
....|.+.+++.++..+.+.+.+... ...--++....|++.++|.+--
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~E--gi~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIE--NVQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCChHHH
Confidence 45679999999999999888876543 2223356778899999999843
No 79
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.3e-07 Score=97.66 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=41.8
Q ss_pred hcCCcccEEeccCCcccccCc--cccCccCcceeecCCccCccc---cChhhhccccCCEEecCCCcC
Q 045843 549 GYMCSLQLLDLHDTKIKLLPS--SISSLTNLKALFLNNCCQLMR---LPAEVGDLHNLEILDLSHTGI 611 (913)
Q Consensus 549 ~~l~~Lr~LdLs~~~i~~lp~--~i~~L~~L~~L~L~~c~~l~~---lP~~i~~L~~L~~L~L~~~~~ 611 (913)
.+++.||.+.|.++.+...+. -...|++++.|+|++ +.+.. +-.-...|++|+.|+|+.|.+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRL 184 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhcccccccc
Confidence 567778888888877776653 456778888888877 44332 223345677777777777765
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=6.7e-05 Score=85.11 Aligned_cols=189 Identities=17% Similarity=0.133 Sum_probs=109.8
Q ss_pred cCccccccchHHHHHHHHHHHhcCCC-cEEEEECCCCCcHHHHHHHHHHHhcccCCCce-EEEEEeCCCCCHHHHHHHHH
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRNVGT-KRICIWGPPGVGKTTIMENLHDAIGESRQFDF-IFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~ 233 (913)
+..+.+++|.+..+..+...+..+.+ ..+-++|+.|+||||+|+.+++...-...... .-+..+....+ ...|.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~i~ 92 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CISFN 92 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHHHh
Confidence 34556788999999999887766654 57889999999999999999987642211100 00000111000 00110
Q ss_pred HH-------ccCCccCCChHHHHHHHHHH----HccCCeEEEEeCCCCcc--ccccccCC--CCCCCceEE-EEeechhh
Q 045843 234 KR-------LDLRAEDHNIDQRADMISEE----LKDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGKVV-FACIFRNI 297 (913)
Q Consensus 234 ~~-------l~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~ii-vTTR~~~v 297 (913)
.. ++.. .....+++...+... +.+++-++|+|+++... .+..+... .....+.+| .||+...+
T Consensus 93 ~~~h~Dv~eidaa-s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 93 NHNHPDIIEIDAA-SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred cCCCCcEEEeecc-CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 00 0000 011222222222111 23677899999998743 34443211 233445555 45555555
Q ss_pred hhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHH
Q 045843 298 CGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMI 351 (913)
Q Consensus 298 ~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 351 (913)
... ....+++.+++.++....+.+.+... ....-++....|++.++|.+--+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~e--gi~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQE--NLKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHH
Confidence 433 45689999999999999999888653 22223456788999999987443
No 81
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=7.6e-05 Score=85.21 Aligned_cols=183 Identities=15% Similarity=0.174 Sum_probs=110.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccC-------------------CCceEEE
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESR-------------------QFDFIFW 216 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~-------------------~F~~~~w 216 (913)
..+.+++|.+..++.+..++...+.. .+.++|+.|+||||+|+.+++...-.. .|...++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 45567889999999999999776654 477999999999999999987653111 1222222
Q ss_pred EEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHH-HccCCeEEEEeCCCCccc--cccccCC--CCCCCceEEE-
Q 045843 217 VTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEE-LKDKSYVLFLDEVSTEIN--LRDIGIH--DEHKNGKVVF- 290 (913)
Q Consensus 217 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~--~~~~~~~--~~~~~s~iiv- 290 (913)
+.......+++ ..++.+.+... ..+++-++|+||+..... ++.+.-. .....+.+|+
T Consensus 93 idaas~~gvd~-----------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 93 IDAASRTGVEE-----------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred eecccccCHHH-----------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 22211111111 11222222211 246778999999976432 3322111 2334555554
Q ss_pred Eeechhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcH-HHHHHHHHHh
Q 045843 291 ACIFRNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMP-HMIKLIGSSL 358 (913)
Q Consensus 291 TTR~~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~~~l 358 (913)
||....+... ....+++++++.++....+.+.+... ....-++....|++.++|.+ .|+..+-.+.
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~e--gi~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKE--NINSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5444444322 56789999999999888887765432 22334556778999999976 4555554433
No 82
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.12 E-value=6.3e-06 Score=82.03 Aligned_cols=47 Identities=21% Similarity=0.425 Sum_probs=34.2
Q ss_pred ccchHHHHHHHHHHH---hcCCCcEEEEECCCCCcHHHHHHHHHHHhccc
Q 045843 162 VPSLNKHLKMLQECL---RNVGTKRICIWGPPGVGKTTIMENLHDAIGES 208 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L---~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 208 (913)
|+||+++++++...+ .....+.+.|+|++|+|||+|.+.++......
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 789999999999999 23456899999999999999999999888744
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=3.3e-05 Score=89.46 Aligned_cols=188 Identities=13% Similarity=0.099 Sum_probs=108.6
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcE-EEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKR-ICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.|.+.+..+.+.. +.++|+.|+||||+|+.+.+...-...+.. ..+..-...+.|...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~~g 85 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIEQG 85 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHHcC
Confidence 456678899999999999998777655 579999999999999999876642111100 000000111111100
Q ss_pred -------ccCCccCCChHH---HHHHHHHH-HccCCeEEEEeCCCCcc--ccccccCC--CCCCCceEEE-Eeechhhhh
Q 045843 236 -------LDLRAEDHNIDQ---RADMISEE-LKDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGKVVF-ACIFRNICG 299 (913)
Q Consensus 236 -------l~~~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~iiv-TTR~~~v~~ 299 (913)
+... .....++ +.+.+... ..+++-++|+|++.... .++.+.-. ......++|+ ||....+..
T Consensus 86 ~~~D~ieidaa-s~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 86 RFVDLIEIDAA-SRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCceeeccc-ccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 0000 0011222 22222111 24678899999998753 23332111 2223444444 444444432
Q ss_pred c---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 300 Q---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 300 ~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
- .+..|.+++++.++..+.+.+.+... ....-++....|++.++|.+--+..+
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e--~i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAE--QIPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 46789999999999999998876432 12223456688999999988544433
No 84
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.08 E-value=1.6e-05 Score=85.97 Aligned_cols=63 Identities=29% Similarity=0.420 Sum_probs=45.6
Q ss_pred hcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEEecCCC-cCCcCCC
Q 045843 549 GYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEILDLSHT-GICCLPS 616 (913)
Q Consensus 549 ~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~-~~~~lp~ 616 (913)
..+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ ..+|++|++++| .+..+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 456778888888888887772 23358888888888888888655 357888888887 4466665
No 85
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.08 E-value=2.5e-06 Score=96.22 Aligned_cols=114 Identities=28% Similarity=0.365 Sum_probs=99.1
Q ss_pred hhhceeeeccccccCCCCCCCCC--ceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecC
Q 045843 506 EVANRISLIRMCLSTLPKRPKCC--RILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLN 583 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~~~~~--~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~ 583 (913)
..+..+++.+|.+..++...... +|+.|++++|.+..++... ..++.|+.|++++|++..+|...+.+.+|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 46889999999999999886554 8999999999999886554 89999999999999999999988899999999999
Q ss_pred CccCccccChhhhccccCCEEecCCCcCCcCCCcc-ccc
Q 045843 584 NCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLT 621 (913)
Q Consensus 584 ~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~ 621 (913)
+ +.+..+|..++.+..|++|.+++|....++..+ ++.
T Consensus 195 ~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~ 232 (394)
T COG4886 195 G-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLK 232 (394)
T ss_pred C-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcc
Confidence 9 899999998888999999999999754555444 444
No 86
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=0.00014 Score=80.10 Aligned_cols=180 Identities=10% Similarity=0.075 Sum_probs=101.1
Q ss_pred cccccchHHHHHHHHHHHhcCC----------CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHH
Q 045843 159 MEEVPSLNKHLKMLQECLRNVG----------TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDI 228 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~~~~----------~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 228 (913)
+.+++|.+..++.|.+++.... ..-+-++|+.|+|||++|+.+....--...- +.++... ..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~~~Cg~C----~~ 75 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----EPGCGEC----RA 75 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----CCCCCCC----HH
Confidence 3467899999999999996643 3457899999999999999998754321100 0000000 00
Q ss_pred HHHHHHHc-------cCCccCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCccc--cccccC--CCCCCCceEEEEe
Q 045843 229 QEVLLKRL-------DLRAEDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEIN--LRDIGI--HDEHKNGKVVFAC 292 (913)
Q Consensus 229 ~~~i~~~l-------~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~--~~~~~~--~~~~~~s~iivTT 292 (913)
-+.+...- .........+++. .+.+.. .+++-++|+|++..... ...+.- .....+..+|++|
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 00000000 0000001112211 122222 24666899999987532 222211 1223455566555
Q ss_pred ec-hhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 293 IF-RNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 293 R~-~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
.+ ..+... ....+.+.+++.++..+.+.+.... .++.+..+++.++|.|.....+
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-------~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-------DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 55 344322 4678999999999999888754321 1456788999999999755444
No 87
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=5.8e-05 Score=86.27 Aligned_cols=180 Identities=17% Similarity=0.158 Sum_probs=107.7
Q ss_pred cCccccccchHHHHHHHHHHHhcCCCcE-EEEECCCCCcHHHHHHHHHHHhcccCC-------------------CceEE
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRNVGTKR-ICIWGPPGVGKTTIMENLHDAIGESRQ-------------------FDFIF 215 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~~-------------------F~~~~ 215 (913)
+..+.+++|.+..++.|.+++..+.++. +-++|+.|+||||+|+.+.+..--... |.-.+
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 3455678899999999999998877765 689999999999999999876642211 11122
Q ss_pred EEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEEE
Q 045843 216 WVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVFA 291 (913)
Q Consensus 216 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iivT 291 (913)
.+..+....++++ +++++.+.. .-..++.-++|+|+|.... ....+.- ......+++|++
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~---------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPY---------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhh---------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 2222222222221 112221110 0113567799999998743 2332211 122345666655
Q ss_pred ee-chhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 292 CI-FRNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 292 TR-~~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
|. ...+... ....+++++++.++....+.+.+... ...--.+....|++.++|.+--+..
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~e--gi~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEE--NVEFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 54 3333322 45678999999998887776665433 1222345667889999998854433
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=3.7e-05 Score=84.00 Aligned_cols=187 Identities=8% Similarity=-0.005 Sum_probs=107.5
Q ss_pred ccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEE------EEeCCCCCHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFW------VTVNSEGNIRDIQE 230 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~w------v~vs~~~~~~~i~~ 230 (913)
...+++|.+...+.+.+.+..+.++ .+-++|+.|+||+|+|..+.+..--......... ..+.... ...+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~c~ 93 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PVAR 93 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hHHH
Confidence 3446789999999999999887766 4889999999999999988876632111100000 0000000 0111
Q ss_pred HHHHHc-------cCC--c------cCCChHHHHHHHHHHHc-----cCCeEEEEeCCCCccc--cccccCC--CCCCCc
Q 045843 231 VLLKRL-------DLR--A------EDHNIDQRADMISEELK-----DKSYVLFLDEVSTEIN--LRDIGIH--DEHKNG 286 (913)
Q Consensus 231 ~i~~~l-------~~~--~------~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~--~~~~~~~--~~~~~s 286 (913)
.|...- ... . ..-.+++ +..+.+++. +++.++|+||+..... ...+... ....++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 111000 000 0 0011233 333444442 5677999999886532 2222111 223455
Q ss_pred eEEEEeechh-hhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 287 KVVFACIFRN-ICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 287 ~iivTTR~~~-v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
.+|++|.+.. +... ....+.+.+++.++..+++.+..... ..+....+++.++|.|..+..+
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~------~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL------PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC------CHHHHHHHHHHcCCCHHHHHHH
Confidence 6666666543 3211 56789999999999999998864221 1122267899999999866554
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=8.7e-05 Score=85.86 Aligned_cols=190 Identities=14% Similarity=0.128 Sum_probs=107.6
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCC--ceEEEEEeCCCCCHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQF--DFIFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~ 233 (913)
..+.+++|.+..++.|.+++....+. .+-++|+.|+||||+|+.+.+..--.... ...-.-.+... ...+.|.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~i~ 88 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRDID 88 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHHHH
Confidence 45667889999999999999877765 55899999999999999997665321100 00000000000 1111110
Q ss_pred H-------HccCCccCCChHHHHHHHHHH----HccCCeEEEEeCCCCcc--ccccccCC--CCCCCceEEEEe-echhh
Q 045843 234 K-------RLDLRAEDHNIDQRADMISEE----LKDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGKVVFAC-IFRNI 297 (913)
Q Consensus 234 ~-------~l~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~iivTT-R~~~v 297 (913)
. .+... .....++..+.+... ..++.-++|+|+|+... .++.+..- ......++|++| ....+
T Consensus 89 ~g~h~D~~eldaa-s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 89 SGRFVDYTELDAA-SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred cCCCCceeecCcc-cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0 00000 011222222222111 12456699999999753 23332111 223445565555 43444
Q ss_pred hhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 298 CGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 298 ~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
... ....+++++++.++..+.+.+.+... ....-.+....|++.++|.+--+..
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~e--gi~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAE--NVPAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 322 56789999999999999998876543 2222356778899999998744433
No 90
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.04 E-value=4.1e-05 Score=84.82 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=100.2
Q ss_pred ccCccccccchHHHHHHHHHHHhc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC
Q 045843 155 HAKKMEEVPSLNKHLKMLQECLRN-------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS 221 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 221 (913)
|.....++.|++..+++|.+.+.. ...+-+.++|++|+|||++|+.+++... ..| +.+..
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~~ 189 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG 189 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecch
Confidence 333445678999999999887631 1245689999999999999999998775 333 22221
Q ss_pred CCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCccc----------------ccccc--CC--
Q 045843 222 EGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTEIN----------------LRDIG--IH-- 280 (913)
Q Consensus 222 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~----------------~~~~~--~~-- 280 (913)
..+.... ++ ........+.+.. ...+.+|++||++.... +..+. ..
T Consensus 190 ----~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 ----SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred ----HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 1111110 00 1111122222222 34678999999976310 11111 00
Q ss_pred CCCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCC-CCCCChHHHHHHHHHHhCCcH
Q 045843 281 DEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQL-KDCRDIKPVARLIINECGGMP 348 (913)
Q Consensus 281 ~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~I~~~c~GlP 348 (913)
....+..||.||........ ....+.++..+.++..++|...+.... ....+ ...+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 12346778888875432211 356789999999999999998875542 11122 356667776654
No 91
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.8e-07 Score=93.43 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=46.6
Q ss_pred eeEEeeccCcccc-CchHHHhcCCcccEEeccCCccc-ccCccccCccCcceeecCCccCccccCh--hhhccccCCEEe
Q 045843 530 ILTLLLQESSLAE-LPASFFGYMCSLQLLDLHDTKIK-LLPSSISSLTNLKALFLNNCCQLMRLPA--EVGDLHNLEILD 605 (913)
Q Consensus 530 Lr~L~l~~~~l~~-l~~~~f~~l~~Lr~LdLs~~~i~-~lp~~i~~L~~L~~L~L~~c~~l~~lP~--~i~~L~~L~~L~ 605 (913)
|+.|+|+...++. -...+++.+..|+-|.|+++.+. .+-..|.+-.+|+.|+|+.|+.+++-.. -+.+|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4555555443332 11233456666777777776665 3344455666677777777666664322 245666666666
Q ss_pred cCCCcC
Q 045843 606 LSHTGI 611 (913)
Q Consensus 606 L~~~~~ 611 (913)
|+.|..
T Consensus 267 lsWc~l 272 (419)
T KOG2120|consen 267 LSWCFL 272 (419)
T ss_pred chHhhc
Confidence 666654
No 92
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.03 E-value=5.1e-07 Score=94.67 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=88.1
Q ss_pred CcccCcceEEecccCCceEeecCC-CcccccccCCceEecccccccchh-ccccccccccccccEEeeccCccccccCch
Q 045843 718 NKFGDVEACIVEDCNEMISIIDGN-LTEGVTFQHLKKLHISHLPKLMHI-WKGSIQSGSLIMLETLILKRCHGMKTLFSE 795 (913)
Q Consensus 718 ~~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~ 795 (913)
.+.++|+.|.+..|..+ +-.... +.. .++.|+.+++.++...... ... ...+++.|++|.|+.|..+++. ..
T Consensus 317 ~~~~~L~~l~l~~c~~f-sd~~ft~l~r--n~~~Le~l~~e~~~~~~d~tL~s--ls~~C~~lr~lslshce~itD~-gi 390 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQF-SDRGFTMLGR--NCPHLERLDLEECGLITDGTLAS--LSRNCPRLRVLSLSHCELITDE-GI 390 (483)
T ss_pred cCCCceEEEeccccchh-hhhhhhhhhc--CChhhhhhcccccceehhhhHhh--hccCCchhccCChhhhhhhhhh-hh
Confidence 34478888888888754 221111 111 5788888888665544422 111 1136888999999988877665 11
Q ss_pred ----HHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeeccccccccccccc-CccCCCCccEEeeec
Q 045843 796 ----EIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHN-MSLAWPLLETITIKA 865 (913)
Q Consensus 796 ----~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~-~~~~~p~L~~L~i~~ 865 (913)
..-.++..|+.|.+++|+.+++-.. ......++|+.+++.+|.....-+.. ....+|+++...+..
T Consensus 391 ~~l~~~~c~~~~l~~lEL~n~p~i~d~~L----e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 391 RHLSSSSCSLEGLEVLELDNCPLITDATL----EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hhhhhccccccccceeeecCCCCchHHHH----HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 1224577888999999988776542 14456788888888888776654432 345677777666554
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=98.03 E-value=9.2e-05 Score=76.22 Aligned_cols=150 Identities=11% Similarity=0.162 Sum_probs=93.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKS 260 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 260 (913)
...+.|+|..|+|||.|++.+++... ..-..++|++..+ +... ...+.+.+++-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~~- 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR-----------------GPELLDNLEQY- 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh-----------------hHHHHHhhhhC-
Confidence 36789999999999999999988664 2223456665432 1111 01222223322
Q ss_pred eEEEEeCCCCc---cccccccCC----CCCCCceEEEEeechhh--hh-------c--CCceEEcccCChHHHHHHHHHH
Q 045843 261 YVLFLDEVSTE---INLRDIGIH----DEHKNGKVVFACIFRNI--CG-------Q--IDEEVNVQRLSGKDAQKLFWET 322 (913)
Q Consensus 261 ~LlVlDdv~~~---~~~~~~~~~----~~~~~s~iivTTR~~~v--~~-------~--~~~~~~l~~L~~~~~~~Lf~~~ 322 (913)
=+||+||+... ..|+...+. ....|..||+|++...- .. . ...++.+++++.++-.+.++++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 27889999743 345442222 23456788888875332 11 0 3467899999999999999966
Q ss_pred hCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHh
Q 045843 323 VGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSL 358 (913)
Q Consensus 323 ~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l 358 (913)
+... .-.--+++..-|++++.|..-.+..+-..|
T Consensus 179 a~~~--~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRR--GLHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6432 122336788888888888765555444333
No 94
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=4.1e-07 Score=90.96 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=36.4
Q ss_pred ccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccc
Q 045843 774 SLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINL 841 (913)
Q Consensus 774 ~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~ 841 (913)
.+|+|..|+|++|..+++- -...+-+++.|++|.++.|+.+..-. -......|.|.+|++.+|
T Consensus 311 rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~----~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPET----LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHH----eeeeccCcceEEEEeccc
Confidence 4677777777777666553 12455667777777777776542110 013445566666666655
No 95
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=8.3e-05 Score=84.91 Aligned_cols=191 Identities=17% Similarity=0.151 Sum_probs=106.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|++..++.+.+++..+..+ .+.++|+.|+||||+|+.+.+...-.. |.... .+..-...+.+...
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINTN 85 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHcC
Confidence 44567889999999999998776555 578999999999999999987764211 11100 00000111111111
Q ss_pred ccCC-----c-cCCChHH---HHHHHHHH-HccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEE-Eeechhhhhc
Q 045843 236 LDLR-----A-EDHNIDQ---RADMISEE-LKDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVF-ACIFRNICGQ 300 (913)
Q Consensus 236 l~~~-----~-~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iiv-TTR~~~v~~~ 300 (913)
.... . .....++ +...+... ..+++-++|+|++.... .+..+.- ......+.+|+ |+....+...
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 0000 0 0011122 11111110 12455579999998642 2333211 12223444544 4444444322
Q ss_pred ---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcH-HHHHHHHH
Q 045843 301 ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMP-HMIKLIGS 356 (913)
Q Consensus 301 ---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~~ 356 (913)
....+.+.+++.++....+.+.+... ...--.+.+..+++.++|.+ .|+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~ke--gi~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKE--KIKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 46689999999999998888866432 11223556788999999966 44444444
No 96
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=0.00022 Score=80.48 Aligned_cols=203 Identities=15% Similarity=0.148 Sum_probs=118.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKS 260 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 260 (913)
...+.|+|..|+|||+|++.+.+.......-..++++ +..++...+...++... .....+.+.++ +.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~------~~~~~~~~~~~-~~ 207 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH------KEIEQFKNEIC-QN 207 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh------hHHHHHHHHhc-cC
Confidence 4568999999999999999999865422222233444 33456666666654311 11223333333 34
Q ss_pred eEEEEeCCCCcc---ccccccCC----CCCCCceEEEEeechh--h-------hhc--CCceEEcccCChHHHHHHHHHH
Q 045843 261 YVLFLDEVSTEI---NLRDIGIH----DEHKNGKVVFACIFRN--I-------CGQ--IDEEVNVQRLSGKDAQKLFWET 322 (913)
Q Consensus 261 ~LlVlDdv~~~~---~~~~~~~~----~~~~~s~iivTTR~~~--v-------~~~--~~~~~~l~~L~~~~~~~Lf~~~ 322 (913)
-+||+||+.... .+....+. ....|..||+|+.... . ... .+-++.+++++.++-.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 589999997642 22222111 2234557888876431 1 111 4668889999999999999998
Q ss_pred hCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHh-----hc---C-CChHHHHHHHHhhcCCCCCCCCchHHHHHHHH
Q 045843 323 VGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSL-----AN---V-SNPAIWRDMLSQLRSPSMAPKQELEEVYKSFK 393 (913)
Q Consensus 323 ~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l-----~~---~-~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~ 393 (913)
+....-...--+++..-|++.++|.|-.+..+...+ .. + .+.+.-+.++..+.. .....-+.+.|..+..
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~-~~~~~~t~~~I~~~Va 366 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPT-SKLGILNVKKIKEVVS 366 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhccc-cccCCCCHHHHHHHHH
Confidence 864311113446788999999999997665554332 11 2 445555566654422 1111123355555554
Q ss_pred Hhcc
Q 045843 394 LVCD 397 (913)
Q Consensus 394 ~sy~ 397 (913)
-.|.
T Consensus 367 ~~~~ 370 (450)
T PRK14087 367 EKYG 370 (450)
T ss_pred HHcC
Confidence 3333
No 97
>PLN03150 hypothetical protein; Provisional
Probab=98.01 E-value=1.1e-05 Score=95.43 Aligned_cols=105 Identities=23% Similarity=0.312 Sum_probs=87.1
Q ss_pred hhceeeecccccc-CCCCC-CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccc-ccCccccCccCcceeecC
Q 045843 507 VANRISLIRMCLS-TLPKR-PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIK-LLPSSISSLTNLKALFLN 583 (913)
Q Consensus 507 ~~~~Lsl~~~~~~-~l~~~-~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~-~lp~~i~~L~~L~~L~L~ 583 (913)
.++.|.+.+|.+. .+|.. ..+++|+.|++++|.+....+..|..+++|++|+|++|++. .+|..+++|.+|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888776 34433 67899999999999888544444699999999999999998 789999999999999999
Q ss_pred CccCccccChhhhcc-ccCCEEecCCCcC
Q 045843 584 NCCQLMRLPAEVGDL-HNLEILDLSHTGI 611 (913)
Q Consensus 584 ~c~~l~~lP~~i~~L-~~L~~L~L~~~~~ 611 (913)
+|.....+|..++.+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 976666999998764 5788899988865
No 98
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.00 E-value=0.0001 Score=76.00 Aligned_cols=164 Identities=11% Similarity=0.097 Sum_probs=95.2
Q ss_pred chHH-HHHHHHHHHh-cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc
Q 045843 164 SLNK-HLKMLQECLR-NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE 241 (913)
Q Consensus 164 gr~~-~~~~l~~~L~-~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 241 (913)
|... .+..+.++.. ......+.|+|..|+|||+||+.+++...- .. ...++++..... ..+
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~-~~-~~~~~i~~~~~~------~~~--------- 85 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY-GG-RNARYLDAASPL------LAF--------- 85 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh-CC-CcEEEEehHHhH------HHH---------
Confidence 4433 3344444443 234568899999999999999999987631 12 233444433311 000
Q ss_pred CCChHHHHHHHHHHHccCCeEEEEeCCCCcccccc--cc--CC-CCCCCc-eEEEEeechhhhh--------c--CCceE
Q 045843 242 DHNIDQRADMISEELKDKSYVLFLDEVSTEINLRD--IG--IH-DEHKNG-KVVFACIFRNICG--------Q--IDEEV 305 (913)
Q Consensus 242 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~--~~--~~-~~~~~s-~iivTTR~~~v~~--------~--~~~~~ 305 (913)
.. ....-+||+||+.....+.. +. +. ....+. .||+|++...... . ....+
T Consensus 86 ------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i 152 (227)
T PRK08903 86 ------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVY 152 (227)
T ss_pred ------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEE
Confidence 01 12345799999976543221 11 11 112344 4666666432211 1 24689
Q ss_pred EcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhh
Q 045843 306 NVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLA 359 (913)
Q Consensus 306 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~ 359 (913)
++.++++++-..++.+.+... ...--++..+.+++.+.|.+..+..+-..+.
T Consensus 153 ~l~pl~~~~~~~~l~~~~~~~--~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 153 ELKPLSDADKIAALKAAAAER--GLQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred EecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999999988777776643221 2233456788888899999988777766553
No 99
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.99 E-value=3.1e-05 Score=83.42 Aligned_cols=90 Identities=20% Similarity=0.274 Sum_probs=64.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC--CCHHHHHHHHHHHccCCccCCCh-------HHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE--GNIRDIQEVLLKRLDLRAEDHNI-------DQRADM 251 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~-------~~~~~~ 251 (913)
-..++|+|++|+|||||++.+++..... +|+..+||.+.+. .++.++++.|+..+-...-+... ......
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3579999999999999999999988743 7999999999966 78999999995544222211111 111222
Q ss_pred HHHH-HccCCeEEEEeCCCCc
Q 045843 252 ISEE-LKDKSYVLFLDEVSTE 271 (913)
Q Consensus 252 l~~~-l~~kr~LlVlDdv~~~ 271 (913)
.... -+|++.+|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 2222 2589999999998763
No 100
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00019 Score=80.73 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=109.1
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhccc-------------------CCCceEEE
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGES-------------------RQFDFIFW 216 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~-------------------~~F~~~~w 216 (913)
..+.+++|.+..++.+.+.+..+.+. .+-++|+.|+||||+|+.+.....-. ..+.-++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 45667889999999998888777766 78899999999999999998643210 01112233
Q ss_pred EEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--cccccC--CCCCCCceEEEEe
Q 045843 217 VTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIGI--HDEHKNGKVVFAC 292 (913)
Q Consensus 217 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~~--~~~~~~s~iivTT 292 (913)
+..+....+.++. .|++...- .-+.+++-++|+|++..... ++.+.- ......+++|++|
T Consensus 90 idaas~~~vddIR-~Iie~~~~---------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 90 IDAASNTSVDDIK-VILENSCY---------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred EecccCCCHHHHH-HHHHHHHh---------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3333222222221 11111100 00135677999999976432 222211 1223456666555
Q ss_pred -echhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHH
Q 045843 293 -IFRNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMI 351 (913)
Q Consensus 293 -R~~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 351 (913)
....+... ....+.+.+++.++..+.+.+.+... ...--++....|++.++|.+-.+
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~E--gi~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKE--NIEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHH
Confidence 33444333 56789999999999999998877653 22233556788999999987543
No 101
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00025 Score=77.13 Aligned_cols=189 Identities=10% Similarity=0.081 Sum_probs=110.6
Q ss_pred ccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCC--CceEEEEEeCCCCCHHHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQ--FDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
....++|.+...+.+...+..+..+ .+.|.|+.|+||||+|..+.+..--... +.... ....+..-...+.|..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQ 97 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHc
Confidence 4456789999999999999777654 5889999999999999999887652110 11110 0001111112222221
Q ss_pred H-------ccCC----c----cCCChHHHHHHHHHHHc-----cCCeEEEEeCCCCccc--cccccC--C-CCCCCceEE
Q 045843 235 R-------LDLR----A----EDHNIDQRADMISEELK-----DKSYVLFLDEVSTEIN--LRDIGI--H-DEHKNGKVV 289 (913)
Q Consensus 235 ~-------l~~~----~----~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~--~~~~~~--~-~~~~~s~ii 289 (913)
. +... . ..-.+++ +..+.+++. +++-++|+|++..... .+.+.. . ...+..-|+
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 1 1000 0 0112233 234444443 5778999999987532 222211 1 122233455
Q ss_pred EEeechhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 290 FACIFRNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 290 vTTR~~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
+|++...+... ....+.+.+++.++..+++.+.... . . ..++....|++.++|.|..+..+
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~-~--~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q-G--SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c-C--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55554444322 4569999999999999999884321 1 1 22456788999999999866544
No 102
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00012 Score=84.42 Aligned_cols=179 Identities=16% Similarity=0.128 Sum_probs=107.3
Q ss_pred cCccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCC-------------------ceEE
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQF-------------------DFIF 215 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F-------------------~~~~ 215 (913)
+..+.+++|.+..++.|.+++..+++. .+.++|+.|+||||+|+.+.+...-.... ...+
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 345567899999999999999877655 57999999999999999998765321111 0111
Q ss_pred EEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHH-HHccCCeEEEEeCCCCccc--cccccC--CCCCCCceEEE
Q 045843 216 WVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISE-ELKDKSYVLFLDEVSTEIN--LRDIGI--HDEHKNGKVVF 290 (913)
Q Consensus 216 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~--~~~~~~--~~~~~~s~iiv 290 (913)
.+..+....+. ++.++...... -..+++-++|+|++..... ...+.- ......+++|+
T Consensus 92 EidaAs~~gVd-----------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fIL 154 (709)
T PRK08691 92 EIDAASNTGID-----------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (709)
T ss_pred EEeccccCCHH-----------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEE
Confidence 11111111111 11111111111 1235778999999976432 222111 12234556666
Q ss_pred Eeech-hhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 291 ACIFR-NICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 291 TTR~~-~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
+|.+. .+... ....+.+.+++.++....+.+.+... ...--.+....|++.++|.+.-+..
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kE--gi~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSE--KIAYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHH
Confidence 66443 33222 44578888999999999998877543 2223356778999999999844433
No 103
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.7e-06 Score=91.30 Aligned_cols=107 Identities=21% Similarity=0.152 Sum_probs=71.7
Q ss_pred hhhhhceeeeccccccCCC---CCCCCCceeEEeeccCccccCc--hHHHhcCCcccEEeccCCcccccCcc--ccCccC
Q 045843 504 EWEVANRISLIRMCLSTLP---KRPKCCRILTLLLQESSLAELP--ASFFGYMCSLQLLDLHDTKIKLLPSS--ISSLTN 576 (913)
Q Consensus 504 ~~~~~~~Lsl~~~~~~~l~---~~~~~~~Lr~L~l~~~~l~~l~--~~~f~~l~~Lr~LdLs~~~i~~lp~~--i~~L~~ 576 (913)
...++|.+++.+..+...+ ....|+++|.|+|+.|-+.... ..+...+++|+.|+|+.|.+...-++ -..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4568889999888877666 3378999999999988444422 24457788999999998877633222 236677
Q ss_pred cceeecCCccCcc-ccChhhhccccCCEEecCCCc
Q 045843 577 LKALFLNNCCQLM-RLPAEVGDLHNLEILDLSHTG 610 (913)
Q Consensus 577 L~~L~L~~c~~l~-~lP~~i~~L~~L~~L~L~~~~ 610 (913)
|+.|.|++|..-. .+-.....+++|+.|++..|.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 8888888864221 222223456777777777774
No 104
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.97 E-value=1.4e-06 Score=87.03 Aligned_cols=111 Identities=23% Similarity=0.208 Sum_probs=95.4
Q ss_pred HhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeec
Q 045843 503 EEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFL 582 (913)
Q Consensus 503 ~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L 582 (913)
.-.+++|+|.++.|.+..+.....+++|..|++++|.++++.... .++-+++.|.|++|.|.++. .+++|..|.+|++
T Consensus 304 KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl 381 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWH-LKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDL 381 (490)
T ss_pred hhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhH-hhhcCEeeeehhhhhHhhhh-hhHhhhhheeccc
Confidence 445789999999999988887788999999999999877765544 67889999999999999885 4899999999999
Q ss_pred CCccCccccC--hhhhccccCCEEecCCCcCCcCCC
Q 045843 583 NNCCQLMRLP--AEVGDLHNLEILDLSHTGICCLPS 616 (913)
Q Consensus 583 ~~c~~l~~lP--~~i~~L~~L~~L~L~~~~~~~lp~ 616 (913)
++ +++..+- .+||+|+.|++|.|.+|.+..+|.
T Consensus 382 ~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 382 SS-NQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred cc-cchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 99 7788764 469999999999999999866664
No 105
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00012 Score=81.85 Aligned_cols=194 Identities=18% Similarity=0.166 Sum_probs=109.8
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcE-EEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE-eCCCCCHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKR-ICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT-VNSEGNIRDIQEVLLK 234 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~ 234 (913)
..+.+++|.+..++.|.+++..+.++. +.++|+.|+||||+|+.+.+...-........|.. +...+..=..-+.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 345678899999999999998777664 78999999999999999988775322111111110 0000000001111111
Q ss_pred HccCC-----c-cCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEEEe-echhhh
Q 045843 235 RLDLR-----A-EDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVFAC-IFRNIC 298 (913)
Q Consensus 235 ~l~~~-----~-~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iivTT-R~~~v~ 298 (913)
..... . .....+++.+ +.+.+ .+++-++|+|++.... .++.+.- ......+.+|++| +...+.
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred CCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 00000 0 0011223222 22333 3566799999988653 3443311 1233455655555 444443
Q ss_pred hc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 299 GQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 299 ~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
.. ....+++.++++++..+.+.+.+... ...--++.+..|++.++|.+--+..
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~--g~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAE--GISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 22 34578999999999988888776432 2223466889999999998754433
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00017 Score=82.99 Aligned_cols=183 Identities=15% Similarity=0.172 Sum_probs=107.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcE-EEEECCCCCcHHHHHHHHHHHhcccC-------------------CCceEEE
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKR-ICIWGPPGVGKTTIMENLHDAIGESR-------------------QFDFIFW 216 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~-------------------~F~~~~w 216 (913)
..+.+++|.+..++.+.+++...++.. +.++|+.|+||||+|+.+.+...-.. .|.-.++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 355678899999999999998777664 57999999999999999987764211 1111122
Q ss_pred EEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--cccccC--CCCCCCceEEEEe
Q 045843 217 VTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIGI--HDEHKNGKVVFAC 292 (913)
Q Consensus 217 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~~--~~~~~~s~iivTT 292 (913)
+..+....+..+ +++++.+.. .-..+++-++|+|++..... ...+.- ......+.+|++|
T Consensus 93 i~~~~~~~vd~i-r~l~~~~~~---------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 93 VDAASNTQVDAM-RELLDNAQY---------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred eeccccCCHHHH-HHHHHHHhh---------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 221111111111 111111100 00135677999999986532 222211 1222345555555
Q ss_pred e-chhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH-HHHHHHHH
Q 045843 293 I-FRNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH-MIKLIGSS 357 (913)
Q Consensus 293 R-~~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~~ 357 (913)
. .+.+... ....+++++++.++..+.+.+.+... ....-++....|++.++|.+- |+..+-.+
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~e--gi~~~~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQE--NIPFDATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 3333221 35688999999999998887766432 122334566889999999774 44444333
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00068 Score=78.05 Aligned_cols=193 Identities=17% Similarity=0.180 Sum_probs=110.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCC-cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGT-KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.|.+++....+ ..+.++|+.|+||||+|+.+.+..--....... .++.=...+.|...
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-------pCg~C~sC~~i~~g 85 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-------PCNTCEQCRKVTQG 85 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-------CCcccHHHHHHhcC
Confidence 3455778999999999998877654 577789999999999999998776421111000 00000011111110
Q ss_pred ccCCc------cCCChHHHHHHHHHH-----HccCCeEEEEeCCCCcc--ccccccCC--CCCCCceEEEEeec-hhhhh
Q 045843 236 LDLRA------EDHNIDQRADMISEE-----LKDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGKVVFACIF-RNICG 299 (913)
Q Consensus 236 l~~~~------~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~iivTTR~-~~v~~ 299 (913)
..... ....+++. +.+.+. ..+++-++|+|++.... .+..+.-. .......+|++|.. ..+..
T Consensus 86 ~hpDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CCCceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 00000 00111111 112222 23567799999997753 22222111 12234555555544 44432
Q ss_pred c---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcH-HHHHHHHHHhh
Q 045843 300 Q---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMP-HMIKLIGSSLA 359 (913)
Q Consensus 300 ~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~~~l~ 359 (913)
. ....+++++++.++..+.+.+.+... ...--++....|++.++|.+ .|+..+..++.
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~e--gi~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGRE--GVDYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2 45688999999999999888866543 12233567888999999965 67777766553
No 108
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.94 E-value=2.9e-05 Score=82.51 Aligned_cols=291 Identities=18% Similarity=0.133 Sum_probs=182.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-ceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHcc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQF-DFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKD 258 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 258 (913)
..+-+.++|.|||||||++-++.+ .+ .-| +.+.++...+-.|...+.-.....++..... -+.....+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHHHHhh
Confidence 347899999999999999999988 43 667 4555666666666666666666656665432 23344556667778
Q ss_pred CCeEEEEeCCCCcccccccc---CCCCCCCceEEEEeechhhhhcCCceEEcccCChH-HHHHHHHHHhCCCC---CCCC
Q 045843 259 KSYVLFLDEVSTEINLRDIG---IHDEHKNGKVVFACIFRNICGQIDEEVNVQRLSGK-DAQKLFWETVGVQL---KDCR 331 (913)
Q Consensus 259 kr~LlVlDdv~~~~~~~~~~---~~~~~~~s~iivTTR~~~v~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~~---~~~~ 331 (913)
+|.++|+||.-+..+--.-. +-.+...-.|+.|+|...... ....+.+.+|+.- ++.++|...+.... --..
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~-ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~ 166 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA-GEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTD 166 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc-ccccccCCccccCCchhHHHHHHHHHhccceeecC
Confidence 99999999976543211100 113344456777777654333 4456677777654 78889877764320 0122
Q ss_pred ChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCC-CC--CCchHHHHHHHHHhccCCchhHHHHhh
Q 045843 332 DIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDMLSQLRSPSM-AP--KQELEEVYKSFKLVCDKLPSDKQLCLL 408 (913)
Q Consensus 332 ~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~-~~--~~~~~~i~~~l~~sy~~L~~~~k~cfl 408 (913)
.-...+.+|.++..|.|++|...++..++-...+.-...-+.+..... .. ........+.+.+||.-|....+.-|.
T Consensus 167 ~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~ 246 (414)
T COG3903 167 DNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFG 246 (414)
T ss_pred CchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhc
Confidence 335688999999999999999999988876332222222222111000 00 111156788999999999999999999
Q ss_pred hhccccCCccccHHHHHHHHHhcCchhhhcchHHHHHHHHHHHHHHHHhcccccCC--CccccchhHHHHHHHHHHhcc
Q 045843 409 YWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEARDRGQSILDEFVKKSLLEKGR--KASHYKMFEHFQRAALRIANH 485 (913)
Q Consensus 409 ~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~--~~~~~~mHdlv~~~a~~i~~~ 485 (913)
-++.|...+.-. -..|.+-|-... .....+..-+..|++.+++...+ ....|+.-+-+|.++..+-.+
T Consensus 247 rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 247 RLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred chhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999998776543 234444442210 11223333466788888876544 344677777777777765443
No 109
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.93 E-value=0.0004 Score=77.08 Aligned_cols=179 Identities=16% Similarity=0.183 Sum_probs=107.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccC--------------------CCceEE
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESR--------------------QFDFIF 215 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~--------------------~F~~~~ 215 (913)
..+.+++|.+..++.+.+++.....+ .+-++|+.|+||||+|+.+.....-.. +++. +
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 34556789999999999999776655 578899999999999999987753110 2222 2
Q ss_pred EEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHH-HccCCeEEEEeCCCCcc--cccccc--CCCCCCCceEEE
Q 045843 216 WVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEE-LKDKSYVLFLDEVSTEI--NLRDIG--IHDEHKNGKVVF 290 (913)
Q Consensus 216 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~~~--~~~~~~~s~iiv 290 (913)
++..+....+.. .+.+.+ .+... ..+++-++|+|++.... ....+. +......+.+|+
T Consensus 90 ~~~~~~~~~~~~-~~~l~~----------------~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 90 EIDAASNNGVDD-IREILD----------------NVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred EeeccccCCHHH-HHHHHH----------------HHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 222111111111 111111 11110 12456689999986542 222221 112234566666
Q ss_pred Eeechh-hhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHH
Q 045843 291 ACIFRN-ICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIG 355 (913)
Q Consensus 291 TTR~~~-v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 355 (913)
+|.+.. +... ....+.+.+++.++..+.+.+.+... ..+--++....+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~--g~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKE--GIKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 665433 2222 45678899999999988888876443 112235678889999999986655544
No 110
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.91 E-value=0.00034 Score=69.69 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=90.1
Q ss_pred HHHHHHhcCCC-cEEEEECCCCCcHHHHHHHHHHHhcccC--------------------CCceEEEEEeC-CCCCHHHH
Q 045843 171 MLQECLRNVGT-KRICIWGPPGVGKTTIMENLHDAIGESR--------------------QFDFIFWVTVN-SEGNIRDI 228 (913)
Q Consensus 171 ~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs-~~~~~~~i 228 (913)
.+.+.+...++ ..+.++|+.|+||||+|+.+.+...-.. +.+. .++... ....++.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45566666666 5688999999999999999987764321 1111 121111 11111111
Q ss_pred HHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEeech-hhhhc---
Q 045843 229 QEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFACIFR-NICGQ--- 300 (913)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTTR~~-~v~~~--- 300 (913)
. ++.+.+... -..+.+-++|+||+..... ++.+. +......+.+|++|++. .+...
T Consensus 82 ~-~i~~~~~~~---------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 82 R-ELVEFLSRT---------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred H-HHHHHHccC---------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh
Confidence 1 111111100 0125677999999876432 33221 11233456666666543 33222
Q ss_pred CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH
Q 045843 301 IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH 349 (913)
Q Consensus 301 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 349 (913)
....+.+.+++.++..+.+.+. + -.++.+..|++.++|.|.
T Consensus 146 r~~~~~~~~~~~~~~~~~l~~~-g-------i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 146 RCQVLPFPPLSEEALLQWLIRQ-G-------ISEEAAELLLALAGGSPG 186 (188)
T ss_pred hcEEeeCCCCCHHHHHHHHHHc-C-------CCHHHHHHHHHHcCCCcc
Confidence 4568999999999998888776 1 124678899999999885
No 111
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.90 E-value=0.00019 Score=79.86 Aligned_cols=167 Identities=16% Similarity=0.271 Sum_probs=96.9
Q ss_pred CccccccchHHHHHHHHHHHhc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC
Q 045843 157 KKMEEVPSLNKHLKMLQECLRN-------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG 223 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (913)
....++.|++..++++.+.+.. ...+-|.++|++|+|||++|+.+++... .. |+.++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~-- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG-- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh--
Confidence 3344678999999999887621 2356789999999999999999998765 22 333322
Q ss_pred CHHHHHHHHHHHccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCcc----------c--cc----ccc--CC--CC
Q 045843 224 NIRDIQEVLLKRLDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTEI----------N--LR----DIG--IH--DE 282 (913)
Q Consensus 224 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~--~~----~~~--~~--~~ 282 (913)
.++. ... .+.. ......+.+.. ...+.+|+|||++... + .. .+. .. ..
T Consensus 199 --~~l~----~~~----~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 --SELV----QKF----IGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred --HHHh----Hhh----ccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 1111 110 0011 11222222222 3467899999997631 0 00 110 00 12
Q ss_pred CCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCC-CCCCChHHHHHHHHHHhCCc
Q 045843 283 HKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQL-KDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 283 ~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~I~~~c~Gl 347 (913)
..+..||.||........ ....+.+++.+.++-.++|+.++.... ....++ ..+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 335667777765432222 346799999999999999998775431 122233 4455666654
No 112
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.0005 Score=80.02 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=109.3
Q ss_pred cCccccccchHHHHHHHHHHHhcCCCcE-EEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE-eCCCCCHHHHHHHHH
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRNVGTKR-ICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT-VNSEGNIRDIQEVLL 233 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~ 233 (913)
+..+.+++|.+..++.|.+++..+.+.. +.++|+.|+||||+|+.+.+...-...++...|-. +...+..=...+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 3445678899999999999998776654 88999999999999999988775322111111110 000000001111111
Q ss_pred HHccCC----c--cCCChHHHHHHHHHH----HccCCeEEEEeCCCCccc--cccccC--CCCCCCceEEE-Eeechhhh
Q 045843 234 KRLDLR----A--EDHNIDQRADMISEE----LKDKSYVLFLDEVSTEIN--LRDIGI--HDEHKNGKVVF-ACIFRNIC 298 (913)
Q Consensus 234 ~~l~~~----~--~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~--~~~~~~--~~~~~~s~iiv-TTR~~~v~ 298 (913)
..-... . .....+++...+... ..+++-++|+||+..... .+.+.- ..-...+.+|+ |++...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 000000 0 001123332222111 235677899999877532 222211 12223455444 44444443
Q ss_pred hc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH-HHHHHH
Q 045843 299 GQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH-MIKLIG 355 (913)
Q Consensus 299 ~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~ 355 (913)
.. ....+++.+++.++....+.+.+... ...--.+.++.|++.++|..- |+..+-
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~e--gi~I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAE--GIQIDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 22 56789999999999888887765432 122335678889999999654 444433
No 113
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.87 E-value=0.0006 Score=70.68 Aligned_cols=187 Identities=17% Similarity=0.133 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhc---CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCc----eEEEEEeCCCCCHHHHHHHHHHHccCC
Q 045843 167 KHLKMLQECLRN---VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFD----FIFWVTVNSEGNIRDIQEVLLKRLDLR 239 (913)
Q Consensus 167 ~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~i~~~i~~~l~~~ 239 (913)
..++.+.+++.. ...+-+.|||.+|.|||++++.+....-....=+ .++.|.....++...+...|+.+++..
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 445556565643 3456799999999999999999997765322111 467777888899999999999999987
Q ss_pred ccC-CChHHHHHHHHHHHcc-CCeEEEEeCCCCccc---------cccccC-CCCCCCceEEEEeechhhhhc-------
Q 045843 240 AED-HNIDQRADMISEELKD-KSYVLFLDEVSTEIN---------LRDIGI-HDEHKNGKVVFACIFRNICGQ------- 300 (913)
Q Consensus 240 ~~~-~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~---------~~~~~~-~~~~~~s~iivTTR~~~v~~~------- 300 (913)
... .............++. +--+||+|++.+... ...+.. .+.-.-+-|.|-|+.-.-+-.
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 744 5556666666666653 566999999987421 111111 133344556666665332222
Q ss_pred CCceEEcccCCh-HHHHHHHHHHhC--CC-CCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 301 IDEEVNVQRLSG-KDAQKLFWETVG--VQ-LKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 301 ~~~~~~l~~L~~-~~~~~Lf~~~~~--~~-~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
...++.++.-.. +|...|+..... +- ..+.-..+++++.|...++|+.=-+..
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 234555555543 444455433221 11 223334578999999999999744433
No 114
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00032 Score=81.00 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=110.6
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcE-EEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKR-ICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.|.+++..+.+.. +.++|+.|+||||+|+.+.+...-...... -.++...+ -+.|...
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~C~~----C~~i~~~ 82 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA---TPCGVCES----CVALAPN 82 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC---CcccccHH----HHHhhcc
Confidence 445678899999999999998877765 689999999999999999876542111100 00011000 0111100
Q ss_pred ---------ccCCccCCChHH---HHHHHHHH-HccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEE-EEeechhh
Q 045843 236 ---------LDLRAEDHNIDQ---RADMISEE-LKDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVV-FACIFRNI 297 (913)
Q Consensus 236 ---------l~~~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~ii-vTTR~~~v 297 (913)
+... ....+++ +.+.+... ..+++-++|+|++.... ..+.+.. ........+| +||....+
T Consensus 83 ~~~~~dvieidaa-s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 83 GPGSIDVVELDAA-SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred cCCCceEEEeccc-cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0000 0011222 22222111 13567799999998642 2332211 1222344444 55555554
Q ss_pred hhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcH-HHHHHHHHHhh
Q 045843 298 CGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMP-HMIKLIGSSLA 359 (913)
Q Consensus 298 ~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~~~l~ 359 (913)
... ....+++.+++.++..+.+.+.+... ...--.+....|++.++|.+ -|+..+-.++.
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~e--gi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQE--GVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 432 56789999999999988887766543 12223456788899999977 45555555444
No 115
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00035 Score=83.94 Aligned_cols=191 Identities=14% Similarity=0.153 Sum_probs=108.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcE-EEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKR-ICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.|..++...++.. +.++|+.|+||||+|+.+.+...-....... .+..+.+ .+.|...
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C~s----C~~~~~g 84 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGECDS----CVALAPG 84 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCcccHH----HHHHHcC
Confidence 345678899999999999998777664 7899999999999999998877522111000 0000000 0000000
Q ss_pred ---------ccCCccCCChHHHHHHHHH-----HHccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEEEe-echh
Q 045843 236 ---------LDLRAEDHNIDQRADMISE-----ELKDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVFAC-IFRN 296 (913)
Q Consensus 236 ---------l~~~~~~~~~~~~~~~l~~-----~l~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iivTT-R~~~ 296 (913)
+... ....+++..+ +.+ -..+++-++|||++.... .++.+.- ..-...+.+|++| ....
T Consensus 85 ~~~~~dv~eidaa-s~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 85 GPGSLDVTEIDAA-SHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCCCCcEEEeccc-ccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 0000 0011222221 211 123567789999998753 2222211 1223345555444 4444
Q ss_pred hhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH-HHHHHHHHh
Q 045843 297 ICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH-MIKLIGSSL 358 (913)
Q Consensus 297 v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~~l 358 (913)
+..- ....|++..++.++..+.+.+.+... ....-.+....|++.++|.+. ++..+-.++
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E--Gv~id~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE--GVPVEPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4332 56789999999999988887765432 122234566789999999884 333343433
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00058 Score=75.96 Aligned_cols=182 Identities=16% Similarity=0.237 Sum_probs=105.8
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhccc------CCCceEE-EEEeCCCCCHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGES------RQFDFIF-WVTVNSEGNIRDI 228 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~------~~F~~~~-wv~vs~~~~~~~i 228 (913)
..+.+++|.+..++.+.+.+..+..+ .+-++|+.|+||||+|+.+.+..... ..|...+ -+......++..+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 93 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI 93 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH
Confidence 34556789999999999999776654 78899999999999999998765421 1121111 1111111111111
Q ss_pred HHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEe-echhhhhc---
Q 045843 229 QEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFAC-IFRNICGQ--- 300 (913)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTT-R~~~v~~~--- 300 (913)
. .+++++.. .-..+++-++|+|++..... +..+. +......+.+|++| +...+...
T Consensus 94 ~-~l~~~~~~---------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 94 R-NLIDQVRI---------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred H-HHHHHHhh---------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 1 11111100 00124566899999875432 33321 11222344555555 33333221
Q ss_pred CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH-HHHHHHH
Q 045843 301 IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH-MIKLIGS 356 (913)
Q Consensus 301 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~ 356 (913)
....+++++++.++....+.+.+... ...--++....|++.++|.+- |+..+-.
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~--g~~i~~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKE--GIKFEDDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45688999999999998888876543 222235688889999999764 4444443
No 117
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.84 E-value=0.00027 Score=86.08 Aligned_cols=177 Identities=15% Similarity=0.152 Sum_probs=101.1
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccC----CCceEEE-EEeCCCCCHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESR----QFDFIFW-VTVNSEGNIRDIQEVL 232 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~w-v~vs~~~~~~~i~~~i 232 (913)
....++||+.++.+++..|......-+.++|++|+||||+|+.+.+...... -.+..+| +..+.-
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l---------- 254 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL---------- 254 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh----------
Confidence 3456899999999999999777767778999999999999999998763111 1122333 222210
Q ss_pred HHHccCCccCCChHHH-HHHHHHHH-ccCCeEEEEeCCCCcc---------ccccccCCCCCCC-ceEEEEeechhhh--
Q 045843 233 LKRLDLRAEDHNIDQR-ADMISEEL-KDKSYVLFLDEVSTEI---------NLRDIGIHDEHKN-GKVVFACIFRNIC-- 298 (913)
Q Consensus 233 ~~~l~~~~~~~~~~~~-~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~~~~~~~~-s~iivTTR~~~v~-- 298 (913)
........+.+.. ...+.+.- .+++.+|++|++.... +...+..|.-.+| -++|-||..+...
T Consensus 255 ---~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~ 331 (852)
T TIGR03345 255 ---QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKY 331 (852)
T ss_pred ---hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhh
Confidence 0000000111122 22222221 2478999999987642 1112344522333 4566666553321
Q ss_pred --hc-----CCceEEcccCChHHHHHHHHHHhCCCC--CCCCChHHHHHHHHHHhCCc
Q 045843 299 --GQ-----IDEEVNVQRLSGKDAQKLFWETVGVQL--KDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 299 --~~-----~~~~~~l~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~~~~~I~~~c~Gl 347 (913)
.. ....+.+++++.++..++++.....-. ....-..+....+++.+.+.
T Consensus 332 ~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 332 FEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 11 446899999999999999754432211 11222345556666666544
No 118
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.00094 Score=72.00 Aligned_cols=206 Identities=11% Similarity=0.157 Sum_probs=127.9
Q ss_pred cccchHHHHHHHHHHHhc----CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHc
Q 045843 161 EVPSLNKHLKMLQECLRN----VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRL 236 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 236 (913)
.++||+.+++.+.+|+.. ...+-+-|.|-+|.|||.+...++.+..-...=.+++++.+..-....+++..|...+
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~ 230 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSL 230 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHH
Confidence 567999999999998843 4567889999999999999999998876322223456776665557788888888887
Q ss_pred c-CCccCCChHHHHHHHHHHHccC--CeEEEEeCCCCccc------cccccCCCCCCCceEEEEeechhh--h-----hc
Q 045843 237 D-LRAEDHNIDQRADMISEELKDK--SYVLFLDEVSTEIN------LRDIGIHDEHKNGKVVFACIFRNI--C-----GQ 300 (913)
Q Consensus 237 ~-~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~------~~~~~~~~~~~~s~iivTTR~~~v--~-----~~ 300 (913)
- .........+.+..+.+..++. -+|+|+|+++.-.. ..-+.+ ..-.++++|+.--.... . ..
T Consensus 231 ~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFew-p~lp~sr~iLiGiANslDlTdR~LprL 309 (529)
T KOG2227|consen 231 LQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEW-PKLPNSRIILIGIANSLDLTDRFLPRL 309 (529)
T ss_pred HHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhc-ccCCcceeeeeeehhhhhHHHHHhhhh
Confidence 2 2222222355566666666543 58999999876321 111122 23345665543322111 1 00
Q ss_pred ------CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhC----CcHHHHHHHHHHhhcCCChHHHHHH
Q 045843 301 ------IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECG----GMPHMIKLIGSSLANVSNPAIWRDM 370 (913)
Q Consensus 301 ------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~----GlPlai~~~~~~l~~~~~~~~w~~~ 370 (913)
....+...|.+.++-.+++..+..... ..+......+-+++||. -+-.|+-+.-+++.= -..+|+..
T Consensus 310 ~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~-t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI--~E~e~r~~ 386 (529)
T KOG2227|consen 310 NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES-TSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEI--AEIEKRKI 386 (529)
T ss_pred hhccCCCCceeeecCCCHHHHHHHHHHHHhccc-ccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHH--HHHHHhhc
Confidence 456788899999999999999986542 22223334444555554 444555555444431 23455554
No 119
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00043 Score=80.46 Aligned_cols=192 Identities=12% Similarity=0.104 Sum_probs=110.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCce--EEEEEeCCCCCHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDF--IFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~i~~~i~ 233 (913)
..+.+++|.+..++.|.+++..+++. .+-++|+.|+||||+|+.+.+...-...... ..+-.+... .-.+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHHHh
Confidence 45667899999999999999777655 6889999999999999999877642211100 000000100 0111111
Q ss_pred HHccCCc------cCCChHHH---HHHHHH-HHccCCeEEEEeCCCCccc--cccccC--CCCCCCceEEEEe-echhhh
Q 045843 234 KRLDLRA------EDHNIDQR---ADMISE-ELKDKSYVLFLDEVSTEIN--LRDIGI--HDEHKNGKVVFAC-IFRNIC 298 (913)
Q Consensus 234 ~~l~~~~------~~~~~~~~---~~~l~~-~l~~kr~LlVlDdv~~~~~--~~~~~~--~~~~~~s~iivTT-R~~~v~ 298 (913)
..-.... ....++++ ++.++. -+.+++-++|+|++..... .+.+.- ..-...+.+|++| ....+.
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 1110000 01122222 221111 1235667899999876532 222211 1223456665555 434433
Q ss_pred hc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 299 GQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 299 ~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
.. ....+.+..++.++....+.+.+... ...--++....|++.++|.+.-+...
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~ke--gi~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKE--GVEVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 45689999999999999998876543 22223467788999999998655443
No 120
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.81 E-value=0.00016 Score=73.52 Aligned_cols=156 Identities=10% Similarity=0.163 Sum_probs=92.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKS 260 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 260 (913)
...+.|+|..|+|||.|.+.+++.......=..+++++ ..+....+...+... . ...+++.++ .-
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~----~----~~~~~~~~~-~~ 98 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG----E----IEEFKDRLR-SA 98 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT----S----HHHHHHHHC-TS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc----c----chhhhhhhh-cC
Confidence 45789999999999999999999875222222344553 344555555544331 1 123334443 45
Q ss_pred eEEEEeCCCCccc---cccccCC----CCCCCceEEEEeechhh---------hhc--CCceEEcccCChHHHHHHHHHH
Q 045843 261 YVLFLDEVSTEIN---LRDIGIH----DEHKNGKVVFACIFRNI---------CGQ--IDEEVNVQRLSGKDAQKLFWET 322 (913)
Q Consensus 261 ~LlVlDdv~~~~~---~~~~~~~----~~~~~s~iivTTR~~~v---------~~~--~~~~~~l~~L~~~~~~~Lf~~~ 322 (913)
=+|++||++.... |+...+. ....|.+||+|++...- ... .+-++++++.++++-.+++.+.
T Consensus 99 DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 99 DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHH
T ss_pred CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHH
Confidence 5889999987532 3332221 23457789999965321 111 5678999999999999999998
Q ss_pred hCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 323 VGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 323 ~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
+... .-+--+++..-|++.+.+..-.+..
T Consensus 179 a~~~--~~~l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 179 AKER--GIELPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHT--T--S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHh--CCCCcHHHHHHHHHhhcCCHHHHHH
Confidence 8653 2224456777777777655544433
No 121
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.81 E-value=4.9e-06 Score=73.92 Aligned_cols=110 Identities=17% Similarity=0.272 Sum_probs=89.4
Q ss_pred hceeeeccccccCCCCC----CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecC
Q 045843 508 ANRISLIRMCLSTLPKR----PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLN 583 (913)
Q Consensus 508 ~~~Lsl~~~~~~~l~~~----~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~ 583 (913)
...+.++++.+..++.. .....|...++++|.+.++|+.+-..++.+..|+|++|.|..+|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 33444444444333322 45567889999999999999998778889999999999999999999999999999999
Q ss_pred CccCccccChhhhccccCCEEecCCCcCCcCCCcc
Q 045843 584 NCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI 618 (913)
Q Consensus 584 ~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i 618 (913)
. +.+...|..+..|.+|-.||..+|....+|...
T Consensus 109 ~-N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 109 F-NPLNAEPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred c-CccccchHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 9 788889999999999999999998887777554
No 122
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.80 E-value=0.00015 Score=79.67 Aligned_cols=106 Identities=19% Similarity=0.267 Sum_probs=73.8
Q ss_pred ccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCC
Q 045843 160 EEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLR 239 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 239 (913)
.++++.+..++.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||++++.++..+....+.- .
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP----~ 248 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP----N 248 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC----C
Confidence 35678889999999888653 47888999999999999999998876667888999999998887776543311 1
Q ss_pred ccC-CChHH-HHHHHHHHHc--cCCeEEEEeCCCCc
Q 045843 240 AED-HNIDQ-RADMISEELK--DKSYVLFLDEVSTE 271 (913)
Q Consensus 240 ~~~-~~~~~-~~~~l~~~l~--~kr~LlVlDdv~~~ 271 (913)
..+ .-... ..+.+...-+ +++++||+|++...
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 111 00011 1122222222 47899999999864
No 123
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.80 E-value=0.00031 Score=73.68 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=105.9
Q ss_pred cccchHHHHHHHHHHHhcCC---CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHcc
Q 045843 161 EVPSLNKHLKMLQECLRNVG---TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLD 237 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~~~---~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 237 (913)
.+.+|+..+..+..++.+.. ...|-|+|..|.|||.+.+++.+... ...+|+++-+.++.+.++..|+.+.+
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHhc
Confidence 45699999999999986543 34568999999999999999998874 23689999999999999999999996
Q ss_pred C-CccCC-------ChHHHHHHHHH--HHc--cCCeEEEEeCCCCccccccccCC--------CCCCCceEEEEee-chh
Q 045843 238 L-RAEDH-------NIDQRADMISE--ELK--DKSYVLFLDEVSTEINLRDIGIH--------DEHKNGKVVFACI-FRN 296 (913)
Q Consensus 238 ~-~~~~~-------~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~~~~~--------~~~~~s~iivTTR-~~~ 296 (913)
. ..++. ........+.+ ... ++.++||||+++...+.+.+.++ ...+...|++..- -+.
T Consensus 82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 2 22221 11222333333 122 46899999999987666554332 2223333332221 122
Q ss_pred hhhc-----CCceEEcccCChHHHHHHHHHH
Q 045843 297 ICGQ-----IDEEVNVQRLSGKDAQKLFWET 322 (913)
Q Consensus 297 v~~~-----~~~~~~l~~L~~~~~~~Lf~~~ 322 (913)
.... ...++.....+.+|..+++.+.
T Consensus 162 ~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 162 QYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2221 3347788999999999999764
No 124
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.8e-05 Score=56.99 Aligned_cols=39 Identities=36% Similarity=0.550 Sum_probs=21.0
Q ss_pred cccEEeccCCcccccCccccCccCcceeecCCccCccccC
Q 045843 553 SLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLP 592 (913)
Q Consensus 553 ~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP 592 (913)
+|++|++++|+|+.+|..+++|++|++|++++ +.++.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCCc
Confidence 45666666666666655556666666666665 3444443
No 125
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.80 E-value=0.0002 Score=77.92 Aligned_cols=142 Identities=14% Similarity=0.201 Sum_probs=84.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+...+.+..++..+..+ ++.++|++|+||||+|+.+++... .. ...+..+. .....+...+ ..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~~---~~~i~~~~-~~~~~i~~~l-~~ 90 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--AE---VLFVNGSD-CRIDFVRNRL-TR 90 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--cc---ceEeccCc-ccHHHHHHHH-HH
Confidence 45567889999999999999776654 566689999999999999998753 22 22333333 1221111111 11
Q ss_pred ccCCccCCChHHHHHHHHHH--HccCCeEEEEeCCCCcc--ccc-ccc--CCCCCCCceEEEEeechhhhhc----CCce
Q 045843 236 LDLRAEDHNIDQRADMISEE--LKDKSYVLFLDEVSTEI--NLR-DIG--IHDEHKNGKVVFACIFRNICGQ----IDEE 304 (913)
Q Consensus 236 l~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~--~~~-~~~--~~~~~~~s~iivTTR~~~v~~~----~~~~ 304 (913)
.... +.+.+-+||+||+.... +.. .+. ......++.+|+||....-... ....
T Consensus 91 ----------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 ----------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred ----------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 0111 12456689999997651 111 111 1133456788888865432111 3446
Q ss_pred EEcccCChHHHHHHHHH
Q 045843 305 VNVQRLSGKDAQKLFWE 321 (913)
Q Consensus 305 ~~l~~L~~~~~~~Lf~~ 321 (913)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 77777777777666544
No 126
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00046 Score=80.64 Aligned_cols=187 Identities=16% Similarity=0.198 Sum_probs=105.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCC-C---ceEEEE-EeCCCCCHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQ-F---DFIFWV-TVNSEGNIRDIQE 230 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~-F---~~~~wv-~vs~~~~~~~i~~ 230 (913)
..+.+++|.+..++.+.+++..+++. .+-++|+.|+||||+|+.+++..--... . .|.... +....+++.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi---- 90 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII---- 90 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE----
Confidence 34567789999999999999776655 4578999999999999999876532111 0 000000 000000000
Q ss_pred HHHHHccCCccCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCcc--ccccccCC--CCCCCce-EEEEeechhhhhc
Q 045843 231 VLLKRLDLRAEDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGK-VVFACIFRNICGQ 300 (913)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~-iivTTR~~~v~~~ 300 (913)
.+... .....++ ++.+.+.+ .+++-++|+|++.... .+..+.-. ....... |++||+...+...
T Consensus 91 ----eidaa-sn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ----EMDAA-SNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ----EEecc-ccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000 0011221 12222222 3567799999987642 23332111 1222334 4555555555432
Q ss_pred ---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH-HHHHHH
Q 045843 301 ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH-MIKLIG 355 (913)
Q Consensus 301 ---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~ 355 (913)
.+..+.+.+++.++....+...+... ....-.+.+..|++.++|.+- |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~ke--gI~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKE--NISYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45689999999999998888765432 112234567889999999774 444433
No 127
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.78 E-value=0.00023 Score=79.28 Aligned_cols=153 Identities=15% Similarity=0.308 Sum_probs=90.1
Q ss_pred ccCccccccchHHHHHHHHHHHhc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC
Q 045843 155 HAKKMEEVPSLNKHLKMLQECLRN-------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS 221 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 221 (913)
|...+.++.|.+..+++|.+.+.- ...+.+.++|++|+|||++|+.+++... ..| +.+..
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f-----i~V~~ 250 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF-----LRVVG 250 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE-----EEEec
Confidence 444555678999999888877621 1345688999999999999999999765 344 22221
Q ss_pred CCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc------------cc----ccc--CC--C
Q 045843 222 EGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN------------LR----DIG--IH--D 281 (913)
Q Consensus 222 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------------~~----~~~--~~--~ 281 (913)
. ++. ... .+.........+.....+.+.+|+||+++.... .. .+. +- .
T Consensus 251 s----eL~----~k~----~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 251 S----ELI----QKY----LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred c----hhh----hhh----cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 1 111 110 011111122222223345788999999764210 00 000 00 1
Q ss_pred CCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC
Q 045843 282 EHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ 326 (913)
Q Consensus 282 ~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~ 326 (913)
...+.+||.||........ ....+.++..+.++..++|..++...
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 2345678888875443222 34678999999999999999876443
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.78 E-value=0.00027 Score=85.48 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=91.0
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhccc---CCC-ceEEEEEeCCCCCHHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGES---RQF-DFIFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~~F-~~~~wv~vs~~~~~~~i~~~i~ 233 (913)
....++||+++++.+++.|......-+.++|++|+|||++|+.+++..... ..+ +..+|.. +...+ .
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l----~ 250 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL----L 250 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH----h
Confidence 344688999999999999977666777899999999999999999876321 111 2334421 11111 1
Q ss_pred HHccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCcc----------ccccccCCCCCCC-ceEEEEeechhh----
Q 045843 234 KRLDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTEI----------NLRDIGIHDEHKN-GKVVFACIFRNI---- 297 (913)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~~~~~~~~~~~~~-s~iivTTR~~~v---- 297 (913)
. ......+.++....+.+.+ +.++.+|++|++.... +...+..|.-..| -++|-+|..++.
T Consensus 251 a---~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~ 327 (731)
T TIGR02639 251 A---GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHF 327 (731)
T ss_pred h---hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHh
Confidence 0 0000112233333333333 3468899999987431 1122333422233 345544443221
Q ss_pred h----hc-CCceEEcccCChHHHHHHHHHHh
Q 045843 298 C----GQ-IDEEVNVQRLSGKDAQKLFWETV 323 (913)
Q Consensus 298 ~----~~-~~~~~~l~~L~~~~~~~Lf~~~~ 323 (913)
. -. ....+.+++++.++..++++...
T Consensus 328 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 328 EKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 11 34589999999999999998654
No 129
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.77 E-value=0.00052 Score=75.93 Aligned_cols=171 Identities=16% Similarity=0.281 Sum_probs=96.9
Q ss_pred cccCccccccchHHHHHHHHHHHh----c---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeC
Q 045843 154 KHAKKMEEVPSLNKHLKMLQECLR----N---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVN 220 (913)
Q Consensus 154 ~~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (913)
.|.....++.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~f-----i~i~ 211 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATF-----IRVV 211 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEe
Confidence 344455577899988888877662 1 2346789999999999999999998765 333 2221
Q ss_pred CCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc------------ccc----cccCC----
Q 045843 221 SEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI------------NLR----DIGIH---- 280 (913)
Q Consensus 221 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~~~----~~~~~---- 280 (913)
. ..+... .++ .....+...+.......+.+|++|+++... ... .+...
T Consensus 212 ~----s~l~~k---~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 212 G----SEFVQK---YLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred h----HHHHHH---hcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 1 111111 011 111112222223334678999999987521 000 11000
Q ss_pred CCCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCc
Q 045843 281 DEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 281 ~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~Gl 347 (913)
....+..||+||...+.... .+..+.++..+.++-.++|+...... .....++ .++++.+.|.
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~ 350 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKI 350 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCC
Confidence 22345678888875443222 34578898888888888888765433 1122233 3455555555
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00084 Score=76.40 Aligned_cols=176 Identities=13% Similarity=0.098 Sum_probs=107.8
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCC------------------Cc-eEEE
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQ------------------FD-FIFW 216 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~------------------F~-~~~w 216 (913)
..+.+++|.+...+.+..++..+..+ ..-++|+.|+||||+|+.+.+..--... +. ..+.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 45567889999999999999777766 4589999999999999988876521110 00 0111
Q ss_pred EEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHH----HccCCeEEEEeCCCCccc--cccccC--CCCCCCceE
Q 045843 217 VTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEE----LKDKSYVLFLDEVSTEIN--LRDIGI--HDEHKNGKV 288 (913)
Q Consensus 217 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~--~~~~~~--~~~~~~s~i 288 (913)
+..+... ..+++.+.+... ..+++-++|+|++..... .+.+.- ......+.+
T Consensus 91 ldaas~~--------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 91 MDAASNR--------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred ecccccc--------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 1111111 122222222110 124667999999976432 222211 122345666
Q ss_pred EEEeech-hhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 289 VFACIFR-NICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 289 ivTTR~~-~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
|++|.+. .+... ....+++.+++.++....+.+.+... ...--++....|++.++|.+--+..+
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~E--Gi~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKE--GVSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 6666543 33221 55789999999999998888766543 22233567889999999999555444
No 131
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00095 Score=78.39 Aligned_cols=190 Identities=13% Similarity=0.111 Sum_probs=109.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.|..++....+. .+.++|+.|+||||+|+.+.+.......... ...++.-...+.|...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~------~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK------GRPCGTCEMCRAIAEG 86 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCccCHHHHHHhcC
Confidence 34557889999999999998776654 4689999999999999999877642111100 0011111222222221
Q ss_pred ccCCc------cCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEEEeec-hhhhh
Q 045843 236 LDLRA------EDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVFACIF-RNICG 299 (913)
Q Consensus 236 l~~~~------~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iivTTR~-~~v~~ 299 (913)
..... .....++.. .+.+.+ .+++-++|+|++.... ..+.+.. ......+.+|++|.+ ..+..
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 11100 011122221 122222 2567799999987642 2333211 122234556555543 33332
Q ss_pred c---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHH
Q 045843 300 Q---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIG 355 (913)
Q Consensus 300 ~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 355 (913)
. ....+.+..++.++....+.+.+... ...--++....|++.++|.+..+...-
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~e--gl~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAE--GINLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 45678899999999888888776543 122335678899999999886554443
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.0011 Score=77.65 Aligned_cols=178 Identities=15% Similarity=0.156 Sum_probs=107.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcE-EEEECCCCCcHHHHHHHHHHHhccc---------------------CCCceE
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKR-ICIWGPPGVGKTTIMENLHDAIGES---------------------RQFDFI 214 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~---------------------~~F~~~ 214 (913)
..+.+++|.+..++.|..++..+.+.. +-++|+.|+||||+|+.+.....-. .+|+..
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~ 93 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH 93 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE
Confidence 445678899999999999998877665 7899999999999999988765311 123321
Q ss_pred EEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--cccccC--CCCCCCceEEE
Q 045843 215 FWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIGI--HDEHKNGKVVF 290 (913)
Q Consensus 215 ~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~~--~~~~~~s~iiv 290 (913)
.+..+....+.++.. +++++... -..+++-++|+|++..... ++.+.- ..-...+.+|+
T Consensus 94 -~ld~~~~~~vd~Ir~-li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 94 -ELDAASNNSVDDIRN-LIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred -EecccccCCHHHHHH-HHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 122221112222221 11111000 0124666899999887532 333211 12223455555
Q ss_pred -Eeechhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 291 -ACIFRNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 291 -TTR~~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
||+...+... .+..+++.+++.++....+.+.+... ....-.+....|++.++|..--+..
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~e--gi~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKE--GITAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4444444332 56789999999999998888766543 2222345778999999997754433
No 133
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=6.7e-05 Score=81.35 Aligned_cols=102 Identities=22% Similarity=0.330 Sum_probs=71.4
Q ss_pred hhhhhceeeeccccccCCCCCCCCCceeEEeeccC-ccccCchHHHhcCCcccEEeccCC-cccccCccccCccCcceee
Q 045843 504 EWEVANRISLIRMCLSTLPKRPKCCRILTLLLQES-SLAELPASFFGYMCSLQLLDLHDT-KIKLLPSSISSLTNLKALF 581 (913)
Q Consensus 504 ~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~-~l~~l~~~~f~~l~~Lr~LdLs~~-~i~~lp~~i~~L~~L~~L~ 581 (913)
.+...++|++.++.+..+|.. .++|++|.+++| .++.+|..+ ..+|++|++++| .+..+|.+ |+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEE
Confidence 456788999998888888843 346999999887 666676543 358999999988 77788865 44444
Q ss_pred cCC--ccCccccChhhhccc------------------cCCEEecCCCcCCcCCC
Q 045843 582 LNN--CCQLMRLPAEVGDLH------------------NLEILDLSHTGICCLPS 616 (913)
Q Consensus 582 L~~--c~~l~~lP~~i~~L~------------------~L~~L~L~~~~~~~lp~ 616 (913)
+.+ |..+..+|.++..|. +|++|++++|....+|.
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~ 173 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPE 173 (426)
T ss_pred eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcc
Confidence 543 445778888766552 57777777776544443
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.0013 Score=74.47 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=106.2
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccC---------------------CCceE
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESR---------------------QFDFI 214 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~---------------------~F~~~ 214 (913)
..+.+++|.+..++.+.+++..+..+ .+-++|+.|+||||+|+.+.+..--.. +++ .
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 44567889999999999999877664 578999999999999999987664211 111 1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHH-HHccCCeEEEEeCCCCcc--cccccc--CCCCCCCceEE
Q 045843 215 FWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISE-ELKDKSYVLFLDEVSTEI--NLRDIG--IHDEHKNGKVV 289 (913)
Q Consensus 215 ~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~--~~~~~~--~~~~~~~s~ii 289 (913)
+++.......+++ +.+....+.- -..+++-++|+|++.... ..+.+. +........+|
T Consensus 93 ~~i~g~~~~gid~-----------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 93 LEIDGASHRGIED-----------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred EEeeccccCCHHH-----------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 1111101111111 1111111111 113677889999987542 222221 11222355666
Q ss_pred EEee-chhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcH-HHHHHHHH
Q 045843 290 FACI-FRNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMP-HMIKLIGS 356 (913)
Q Consensus 290 vTTR-~~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~~ 356 (913)
++|. ...+... ....+++.++++++....+.+.+... ...--++.+..|++.++|.+ .|+..+-.
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e--g~~i~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQE--GIETSREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6553 3333222 56689999999999988888765432 22234567888999999976 44444433
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=2.5e-05 Score=56.33 Aligned_cols=40 Identities=43% Similarity=0.586 Sum_probs=34.5
Q ss_pred cCcceeecCCccCccccChhhhccccCCEEecCCCcCCcCC
Q 045843 575 TNLKALFLNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLP 615 (913)
Q Consensus 575 ~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp 615 (913)
++|++|++++ +.++.+|..+++|++|++|++++|.+..+|
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4799999999 789999988999999999999999987655
No 136
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0016 Score=74.13 Aligned_cols=180 Identities=16% Similarity=0.164 Sum_probs=104.1
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcE-EEEECCCCCcHHHHHHHHHHHhccc---C----------------CCceEEE
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKR-ICIWGPPGVGKTTIMENLHDAIGES---R----------------QFDFIFW 216 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~---~----------------~F~~~~w 216 (913)
..+.+++|.+..+..+.+++....... ..++|+.|+||||+|+.++....-. . .|...++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 345677899999999999997766554 5689999999999999988765310 0 0111111
Q ss_pred EEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHH-HccCCeEEEEeCCCCcc--cccccc--CCCCCCCceEEEE
Q 045843 217 VTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEE-LKDKSYVLFLDEVSTEI--NLRDIG--IHDEHKNGKVVFA 291 (913)
Q Consensus 217 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~--~~~~~~--~~~~~~~s~iivT 291 (913)
+..+....+.. ...+.+.+... ..+++-++|+|++.... ..+.+. +........+|++
T Consensus 93 idaas~~gvd~-----------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~ 155 (486)
T PRK14953 93 IDAASNRGIDD-----------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILC 155 (486)
T ss_pred EeCccCCCHHH-----------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 21111111111 11111111110 13567799999987642 222221 1122233444444
Q ss_pred e-echhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHH
Q 045843 292 C-IFRNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIG 355 (913)
Q Consensus 292 T-R~~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 355 (913)
| +...+... ....+.+.+++.++....+.+.+... ....-.+....|++.++|.+-.+....
T Consensus 156 tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~e--gi~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 156 TTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEE--KIEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred ECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 44333322 45689999999999988888766432 122234567788899999775444443
No 137
>PF14516 AAA_35: AAA-like domain
Probab=97.71 E-value=0.0062 Score=66.26 Aligned_cols=190 Identities=15% Similarity=0.164 Sum_probs=118.0
Q ss_pred cchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-----CCHHHHHH----HHH
Q 045843 163 PSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE-----GNIRDIQE----VLL 233 (913)
Q Consensus 163 ~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~----~i~ 233 (913)
|.|....+++.+.+.+++ ..+.|.|+-.+|||+|...+.+..+.. . ...+++.+..- .+....++ .|.
T Consensus 14 i~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~~~-~-~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~ 90 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQQQ-G-YRCVYIDLQQLGSAIFSDLEQFLRWFCEEIS 90 (331)
T ss_pred cCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHHHC-C-CEEEEEEeecCCCcccCCHHHHHHHHHHHHH
Confidence 688877777877776643 589999999999999999999888632 3 34556775542 24554444 445
Q ss_pred HHccCCcc--------CCChHHHHHHHHHHH-c--cCCeEEEEeCCCCccccc----cc----------cCCCCCCCc--
Q 045843 234 KRLDLRAE--------DHNIDQRADMISEEL-K--DKSYVLFLDEVSTEINLR----DI----------GIHDEHKNG-- 286 (913)
Q Consensus 234 ~~l~~~~~--------~~~~~~~~~~l~~~l-~--~kr~LlVlDdv~~~~~~~----~~----------~~~~~~~~s-- 286 (913)
++++.... ..........+.+.+ . +++.+|++|+|+...... ++ +........
T Consensus 91 ~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~ 170 (331)
T PF14516_consen 91 RQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLR 170 (331)
T ss_pred HHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEE
Confidence 55544321 012223334444433 2 689999999998743211 11 000111111
Q ss_pred eEEEEeechhhhh----c---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhh
Q 045843 287 KVVFACIFRNICG----Q---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLA 359 (913)
Q Consensus 287 ~iivTTR~~~v~~----~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~ 359 (913)
-|++.+....... + ....++|++++.+|...|..+.-.. --....+.|...+||+|.-+..++..+.
T Consensus 171 li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 171 LILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLVQKACYLLV 244 (331)
T ss_pred EEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2222221111111 1 4558899999999999999876322 1123389999999999999999999997
Q ss_pred cC
Q 045843 360 NV 361 (913)
Q Consensus 360 ~~ 361 (913)
.+
T Consensus 245 ~~ 246 (331)
T PF14516_consen 245 EE 246 (331)
T ss_pred Hc
Confidence 65
No 138
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.70 E-value=0.0019 Score=72.73 Aligned_cols=197 Identities=11% Similarity=0.156 Sum_probs=112.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKS 260 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 260 (913)
...+.|+|+.|+|||+|++.+++.......-..++++.. .++...+...+... ..+ .+.+.+++ .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~----~~~----~~~~~~~~-~ 200 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN----KME----EFKEKYRS-V 200 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC----CHH----HHHHHHHh-C
Confidence 357899999999999999999998762211123455542 33444454444321 222 23333332 3
Q ss_pred eEEEEeCCCCccc---cccccCC----CCCCCceEEEEeech--hh-------hhc--CCceEEcccCChHHHHHHHHHH
Q 045843 261 YVLFLDEVSTEIN---LRDIGIH----DEHKNGKVVFACIFR--NI-------CGQ--IDEEVNVQRLSGKDAQKLFWET 322 (913)
Q Consensus 261 ~LlVlDdv~~~~~---~~~~~~~----~~~~~s~iivTTR~~--~v-------~~~--~~~~~~l~~L~~~~~~~Lf~~~ 322 (913)
-+|||||+..... +....+. ....+..+|+|+... .. ... .+..+.+++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4899999986422 1111111 112456688887642 11 111 2357899999999999999998
Q ss_pred hCCCCCCCCChHHHHHHHHHHhCCcHHHHH----HHHHH--hh-cCCChHHHHHHHHhhcCCCCCCCCchHHHHHHHHHh
Q 045843 323 VGVQLKDCRDIKPVARLIINECGGMPHMIK----LIGSS--LA-NVSNPAIWRDMLSQLRSPSMAPKQELEEVYKSFKLV 395 (913)
Q Consensus 323 ~~~~~~~~~~~~~~~~~I~~~c~GlPlai~----~~~~~--l~-~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~s 395 (913)
+... ...--+++...|++.+.|..-.+. .+..+ +. ...+.+..+.++...-. .....-+.+.|..+..--
T Consensus 281 ~~~~--~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~~~-~~~~~it~~~I~~~Va~~ 357 (405)
T TIGR00362 281 AEEE--GLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLR-AKKKEITIENIQEVVAKY 357 (405)
T ss_pred HHHc--CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-ccCCCCCHHHHHHHHHHH
Confidence 8653 222346788889999988765333 22211 11 22566677777765422 111122335555555533
No 139
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.69 E-value=0.00026 Score=74.43 Aligned_cols=149 Identities=16% Similarity=0.194 Sum_probs=77.4
Q ss_pred cccchHHHHHHHHHH---Hh------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCH
Q 045843 161 EVPSLNKHLKMLQEC---LR------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNI 225 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~---L~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (913)
.++|.+..++.|.+. .. .+....+.++|++|+||||+|+.+++.......-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 467877776665433 20 123457889999999999999999876531111111223333221
Q ss_pred HHHHHHHHHHccCCccCCChHHHHHHHHHHHc-cCCeEEEEeCCCCcc----------ccccccCC--CCCCCceEEEEe
Q 045843 226 RDIQEVLLKRLDLRAEDHNIDQRADMISEELK-DKSYVLFLDEVSTEI----------NLRDIGIH--DEHKNGKVVFAC 292 (913)
Q Consensus 226 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~----------~~~~~~~~--~~~~~s~iivTT 292 (913)
++... . .+.... .+++.++ ...-+|++|++.... ..+.+.-. .......+|+++
T Consensus 84 -~l~~~----~----~g~~~~----~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLVGE----Y----IGHTAQ----KTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhhhh----h----ccchHH----HHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11111 0 011111 1222221 123489999997622 11111111 222233455555
Q ss_pred echhh----------hhcCCceEEcccCChHHHHHHHHHHhCC
Q 045843 293 IFRNI----------CGQIDEEVNVQRLSGKDAQKLFWETVGV 325 (913)
Q Consensus 293 R~~~v----------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 325 (913)
..... .......+.+++++.++-.+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 43322 1113456889999999999999877643
No 140
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.67 E-value=0.0007 Score=65.89 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=64.6
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHc
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRL 236 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 236 (913)
..+.++||-++.++.+.-.-.+.+.+.+.|-||+|+||||-+..+++..--...=+.+.-...|+...
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG------------ 91 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG------------ 91 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccc------------
Confidence 34457889999999988777888999999999999999999988887764211223333334444333
Q ss_pred cCCccCCChHHHHHHHHHHHc-------cCCeEEEEeCCCCcc
Q 045843 237 DLRAEDHNIDQRADMISEELK-------DKSYVLFLDEVSTEI 272 (913)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~-------~kr~LlVlDdv~~~~ 272 (913)
++-...+++.+-+ ++.-.||||+.++..
T Consensus 92 --------IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 92 --------IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred --------cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 3333333333322 556789999998853
No 141
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.67 E-value=0.0017 Score=74.20 Aligned_cols=197 Identities=12% Similarity=0.147 Sum_probs=114.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCC--ceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHcc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQF--DFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKD 258 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 258 (913)
...+.|+|+.|+|||+|++.+++... +++ ..+++++.. ++...+...+... .. ..+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~v~yi~~~------~~~~~~~~~~~~~----~~----~~~~~~~~- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL--EKNPNAKVVYVTSE------KFTNDFVNALRNN----TM----EEFKEKYR- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HhCCCCeEEEEEHH------HHHHHHHHHHHcC----cH----HHHHHHHh-
Confidence 45789999999999999999999876 333 234455432 3333444443221 11 22333333
Q ss_pred CCeEEEEeCCCCccc---cc-cccC---CCCCCCceEEEEeechh--h-------hhc--CCceEEcccCChHHHHHHHH
Q 045843 259 KSYVLFLDEVSTEIN---LR-DIGI---HDEHKNGKVVFACIFRN--I-------CGQ--IDEEVNVQRLSGKDAQKLFW 320 (913)
Q Consensus 259 kr~LlVlDdv~~~~~---~~-~~~~---~~~~~~s~iivTTR~~~--v-------~~~--~~~~~~l~~L~~~~~~~Lf~ 320 (913)
+.-+||+||+..... +. .+.. .-...|..||+||.... + ... .+.++.+++.+.++-..+++
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 355899999976321 21 1111 01223456888876431 1 111 34689999999999999999
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHhCCcHHHHH----HHHHH--hhc-CCChHHHHHHHHhhcCCCCCCCCchHHHHHHHH
Q 045843 321 ETVGVQLKDCRDIKPVARLIINECGGMPHMIK----LIGSS--LAN-VSNPAIWRDMLSQLRSPSMAPKQELEEVYKSFK 393 (913)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~----~~~~~--l~~-~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~ 393 (913)
+.+... ...--+++..-|++.+.|..-.+. .+..+ +.+ ..+.+..+.++..+.. .....-+.+.|.....
T Consensus 291 ~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~-~~~~~~~~~~i~~~v~ 367 (450)
T PRK00149 291 KKAEEE--GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLA-AQKKKITIENIQKVVA 367 (450)
T ss_pred HHHHHc--CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhc-cCCCCCCHHHHHHHHH
Confidence 988642 223346788899999998865333 22221 112 2677777888776522 1111223455555554
Q ss_pred Hhcc
Q 045843 394 LVCD 397 (913)
Q Consensus 394 ~sy~ 397 (913)
-.|.
T Consensus 368 ~~~~ 371 (450)
T PRK00149 368 EYYN 371 (450)
T ss_pred HHcC
Confidence 4443
No 142
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.64 E-value=0.00048 Score=84.29 Aligned_cols=152 Identities=20% Similarity=0.230 Sum_probs=89.1
Q ss_pred cccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhccc---CCC-ceEEEEEeCCCCCHHHHHHHHHH
Q 045843 159 MEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGES---RQF-DFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~~F-~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
...++||+++++.+++.|.....+-+.++|++|+|||++|+.++...... ... +..+|. + +...++
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----- 247 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----- 247 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh-----
Confidence 34578999999999999977666677899999999999999998876311 111 234442 1 211111
Q ss_pred HccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCcc---------ccccccCCC-CCCCceEEEEeechhh----hh
Q 045843 235 RLDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTEI---------NLRDIGIHD-EHKNGKVVFACIFRNI----CG 299 (913)
Q Consensus 235 ~l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~~~~-~~~~s~iivTTR~~~v----~~ 299 (913)
.......+.++....+-+.+ ..++.+|++|++.... +...+..|. ....-++|.+|..+.. ..
T Consensus 248 --ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~ 325 (821)
T CHL00095 248 --AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEK 325 (821)
T ss_pred --ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhc
Confidence 11111122233333333332 3578999999986421 112222232 2223455555555443 11
Q ss_pred c-----CCceEEcccCChHHHHHHHHHH
Q 045843 300 Q-----IDEEVNVQRLSGKDAQKLFWET 322 (913)
Q Consensus 300 ~-----~~~~~~l~~L~~~~~~~Lf~~~ 322 (913)
. ...++.++..+.++...+++..
T Consensus 326 D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 326 DPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred CHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1 3457888889999988887654
No 143
>PRK06620 hypothetical protein; Validated
Probab=97.64 E-value=0.00037 Score=70.46 Aligned_cols=132 Identities=10% Similarity=0.074 Sum_probs=80.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCe
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSY 261 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~ 261 (913)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. + +.. +..-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~--------------------~-------~~~-~~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN--------------------E-------EIL-EKYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc--------------------h-------hHH-hcCC
Confidence 5699999999999999999877653 1 1111 10000 0 011 2335
Q ss_pred EEEEeCCCCccccccccC--CCCCCCceEEEEeechhhh---hc------CCceEEcccCChHHHHHHHHHHhCCCCCCC
Q 045843 262 VLFLDEVSTEINLRDIGI--HDEHKNGKVVFACIFRNIC---GQ------IDEEVNVQRLSGKDAQKLFWETVGVQLKDC 330 (913)
Q Consensus 262 LlVlDdv~~~~~~~~~~~--~~~~~~s~iivTTR~~~v~---~~------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 330 (913)
+|++||+....+..-+.. .....|..||+|++..... .. ...++.++++++++-..++.+.+... .-
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~--~l 165 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS--SV 165 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc--CC
Confidence 788999984322111100 0225577899999854321 11 45689999999999888888776532 12
Q ss_pred CChHHHHHHHHHHhCCcHHHHH
Q 045843 331 RDIKPVARLIINECGGMPHMIK 352 (913)
Q Consensus 331 ~~~~~~~~~I~~~c~GlPlai~ 352 (913)
.--+++.+-|++.+.|.--.+.
T Consensus 166 ~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 166 TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CCCHHHHHHHHHHccCCHHHHH
Confidence 2346677888888877654433
No 144
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0035 Score=71.40 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=91.2
Q ss_pred cccchHHHHHHHHHHHh------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLR------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
+-+|-++..++|+++|. +-+-+++.+||++|+|||+|++.|+.-.. +.|- -+.++.-.|..+|...=-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--Rkfv---R~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKFV---RISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCEE---EEecCccccHHHhcccccc
Confidence 35799999999999993 22447999999999999999999998876 5552 2233443444433211111
Q ss_pred HccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc-c--------cccccCCC------------CCCCceEEEEee
Q 045843 235 RLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI-N--------LRDIGIHD------------EHKNGKVVFACI 293 (913)
Q Consensus 235 ~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~--------~~~~~~~~------------~~~~s~iivTTR 293 (913)
.+|. =....++.++ ..+.+.-+++||+++... + +-.+..|. .-.=|+|++.+.
T Consensus 399 YIGa-----mPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaT 472 (782)
T COG0466 399 YIGA-----MPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIAT 472 (782)
T ss_pred cccc-----CChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEee
Confidence 1110 0112222222 224578899999998631 1 11122221 111255554444
Q ss_pred chhhh---hc---CCceEEcccCChHHHHHHHHHHhCC
Q 045843 294 FRNIC---GQ---IDEEVNVQRLSGKDAQKLFWETVGV 325 (913)
Q Consensus 294 ~~~v~---~~---~~~~~~l~~L~~~~~~~Lf~~~~~~ 325 (913)
..... .. .-.++++.+.+++|-.++-+++.-+
T Consensus 473 ANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiP 510 (782)
T COG0466 473 ANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIP 510 (782)
T ss_pred cCccccCChHHhcceeeeeecCCChHHHHHHHHHhcch
Confidence 33332 22 4568999999999998888877643
No 145
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.62 E-value=0.00086 Score=68.43 Aligned_cols=182 Identities=15% Similarity=0.205 Sum_probs=113.4
Q ss_pred cCccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEE-EEeCCCCCHHHHHHHHHH
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFW-VTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~i~~~i~~ 234 (913)
+..+.+++|.+..+..+.+.+.....++...+|++|.|||+-|..++...--.+.|.+++- .++|......-+-..+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki-- 109 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI-- 109 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh--
Confidence 3455678899999999999998888899999999999999999988877655566766543 3444432211110000
Q ss_pred HccCCccCCChHHHHHHHHHHH--ccCC-eEEEEeCCCCc--cccccccCC--CCCCCceEE-EEeechhhhhc---CCc
Q 045843 235 RLDLRAEDHNIDQRADMISEEL--KDKS-YVLFLDEVSTE--INLRDIGIH--DEHKNGKVV-FACIFRNICGQ---IDE 303 (913)
Q Consensus 235 ~l~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~--~~~~~~~~~--~~~~~s~ii-vTTR~~~v~~~---~~~ 303 (913)
.+...+........ .-++ -.+|||+++.. +.|..+.-. .....++.| ||+--..+... ...
T Consensus 110 --------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 110 --------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred --------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 00111100000000 0123 58899999874 557665322 334445544 44333333332 456
Q ss_pred eEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH
Q 045843 304 EVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH 349 (913)
Q Consensus 304 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 349 (913)
.|..++|.+++...-++..+..+ ..+--.+..+.|++.++|.--
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E--~v~~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKE--GVDIDDDALKLIAKISDGDLR 225 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHcCCcHH
Confidence 88999999999998888887654 333445678889999988653
No 146
>CHL00181 cbbX CbbX; Provisional
Probab=97.60 E-value=0.00071 Score=71.68 Aligned_cols=128 Identities=16% Similarity=0.217 Sum_probs=71.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeE
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYV 262 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~L 262 (913)
.+.++|++|+||||+|+.+++.....+.-....|+.++.. ++.... .+. ........+.+ ...-+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~l~~~~---~g~-----~~~~~~~~l~~---a~ggV 125 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----DLVGQY---IGH-----TAPKTKEVLKK---AMGGV 125 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----HHHHHH---hcc-----chHHHHHHHHH---ccCCE
Confidence 5889999999999999999876532121122225555521 222211 111 11111112222 13359
Q ss_pred EEEeCCCCc------cccc-----ccc--CCCCCCCceEEEEeechhhh----------hcCCceEEcccCChHHHHHHH
Q 045843 263 LFLDEVSTE------INLR-----DIG--IHDEHKNGKVVFACIFRNIC----------GQIDEEVNVQRLSGKDAQKLF 319 (913)
Q Consensus 263 lVlDdv~~~------~~~~-----~~~--~~~~~~~s~iivTTR~~~v~----------~~~~~~~~l~~L~~~~~~~Lf 319 (913)
|++|++... .++. .+. ......+..||+++...... ......+.+++++.+|-.+++
T Consensus 126 LfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~ 205 (287)
T CHL00181 126 LFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIA 205 (287)
T ss_pred EEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHH
Confidence 999999752 0121 111 11333456777777543321 115668999999999999998
Q ss_pred HHHhCC
Q 045843 320 WETVGV 325 (913)
Q Consensus 320 ~~~~~~ 325 (913)
.+.+..
T Consensus 206 ~~~l~~ 211 (287)
T CHL00181 206 KIMLEE 211 (287)
T ss_pred HHHHHH
Confidence 887654
No 147
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=5.2e-05 Score=76.26 Aligned_cols=84 Identities=20% Similarity=0.269 Sum_probs=41.0
Q ss_pred CCCCceeEEeeccCccccCch--HHHhcCCcccEEeccCCcccccCccc-cCccCcceeecCCccCcc--ccChhhhccc
Q 045843 525 PKCCRILTLLLQESSLAELPA--SFFGYMCSLQLLDLHDTKIKLLPSSI-SSLTNLKALFLNNCCQLM--RLPAEVGDLH 599 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~--~~f~~l~~Lr~LdLs~~~i~~lp~~i-~~L~~L~~L~L~~c~~l~--~lP~~i~~L~ 599 (913)
..+..++.+++.+|.++.... .++.++++|++|+|+.|++..--... -.+.||++|-|.+ +.+. ..-..+..++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcch
Confidence 455666666666665544322 23456666666666666543111111 2445555665555 3322 2233344455
Q ss_pred cCCEEecCCC
Q 045843 600 NLEILDLSHT 609 (913)
Q Consensus 600 ~L~~L~L~~~ 609 (913)
.++.|.++.|
T Consensus 147 ~vtelHmS~N 156 (418)
T KOG2982|consen 147 KVTELHMSDN 156 (418)
T ss_pred hhhhhhhccc
Confidence 5555555444
No 148
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=5.4e-05 Score=89.25 Aligned_cols=133 Identities=20% Similarity=0.206 Sum_probs=92.5
Q ss_pred hhhhhceeeecccccc--CCCC--CCCCCceeEEeeccCccccC-chHHHhcCCcccEEeccCCcccccCccccCccCcc
Q 045843 504 EWEVANRISLIRMCLS--TLPK--RPKCCRILTLLLQESSLAEL-PASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLK 578 (913)
Q Consensus 504 ~~~~~~~Lsl~~~~~~--~l~~--~~~~~~Lr~L~l~~~~l~~l-~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~ 578 (913)
...++++|.+.+...- .++. +.-+|.|++|.+.+-.+..- -...+.++++|+.||+|+++++.+ ..|++|.|||
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 4457888888764321 1221 16789999999998644321 123457899999999999999998 7799999999
Q ss_pred eeecCCccCccccC--hhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccc
Q 045843 579 ALFLNNCCQLMRLP--AEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 579 ~L~L~~c~~l~~lP--~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
.|.+++ -.+..-+ ..+.+|++|++||+|......-+..+ .-....-.+|+|+.|+.++.
T Consensus 199 ~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 199 VLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHhccC-CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 999987 5444322 35789999999999998775444322 00011112348999988765
No 149
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.59 E-value=0.00086 Score=77.49 Aligned_cols=198 Identities=14% Similarity=0.200 Sum_probs=106.2
Q ss_pred ccCccccccchHHHHHHHHHHH---hc---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC
Q 045843 155 HAKKMEEVPSLNKHLKMLQECL---RN---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE 222 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~l~~~L---~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (913)
+...+.+++|.+..++++.+++ .. ...+-+.++|++|+|||++|+.+++... .. ++.++..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~-----~~~i~~~ 122 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VP-----FFSISGS 122 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CC-----eeeccHH
Confidence 3445567889887776665544 21 2234688999999999999999998765 22 2333221
Q ss_pred CCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc------------ccc----ccC----CCC
Q 045843 223 GNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN------------LRD----IGI----HDE 282 (913)
Q Consensus 223 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------------~~~----~~~----~~~ 282 (913)
++.... . +.....+...+....+..+.+|++||++.... +.. +.. ...
T Consensus 123 ----~~~~~~---~-----g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 123 ----DFVEMF---V-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred ----HHHHHH---h-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 111110 0 11122222333333445678999999965210 111 100 012
Q ss_pred CCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCc-HHHHHHH
Q 045843 283 HKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGM-PHMIKLI 354 (913)
Q Consensus 283 ~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~~ 354 (913)
..+-.||.||........ .+..+.++..+.++-.++|+..+...... + ......+++.+.|. +--|..+
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~--~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-P--DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-c--chhHHHHHHhCCCCCHHHHHHH
Confidence 334456666655432111 45678899888888888888876543111 1 11234777777774 3333333
Q ss_pred HH---H--hhcC---CChHHHHHHHHhh
Q 045843 355 GS---S--LANV---SNPAIWRDMLSQL 374 (913)
Q Consensus 355 ~~---~--l~~~---~~~~~w~~~~~~l 374 (913)
.. . .+.+ -+.+..+.+++..
T Consensus 268 ~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 268 LNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 22 1 1111 4556666666554
No 150
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.0015 Score=75.61 Aligned_cols=187 Identities=11% Similarity=0.095 Sum_probs=107.8
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.+..++..+..+ .+-++|+.|+||||+|+.+.+..--...... ..+....+-.. |...
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C~~----i~~~ 85 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSCKS----IDND 85 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHHHH----HHcC
Confidence 44567889999999999999776665 5789999999999999999877642111100 00111111111 1110
Q ss_pred -------ccCCccCCChHHHHHHH---HH-HHccCCeEEEEeCCCCccc--cccccCC--CCCCCceEEEEe-echhhhh
Q 045843 236 -------LDLRAEDHNIDQRADMI---SE-ELKDKSYVLFLDEVSTEIN--LRDIGIH--DEHKNGKVVFAC-IFRNICG 299 (913)
Q Consensus 236 -------l~~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdv~~~~~--~~~~~~~--~~~~~s~iivTT-R~~~v~~ 299 (913)
+... .....++..... .. -..+++-++|+|++..... ++.+.-. .....+.+|++| ....+..
T Consensus 86 ~~~dv~~idga-s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 86 NSLDVIEIDGA-SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCeEEecCc-ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 0000 001122222111 11 1235777999999887532 3333111 223445555555 3344432
Q ss_pred c---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHH
Q 045843 300 Q---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKL 353 (913)
Q Consensus 300 ~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 353 (913)
. ....+.+.+++.++-.+.+.+.+... ..+--++....|++.++|.+-.+..
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~e--gi~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLED--QIKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 45678999999999988888776443 2233456778899999998854443
No 151
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.0021 Score=72.67 Aligned_cols=177 Identities=11% Similarity=0.174 Sum_probs=105.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCc-eEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFD-FIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDK 259 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 259 (913)
..-+.|+|+.|+|||+|++.+++.... .+.. .++|++. .++...+...+... ..+ ...+.++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~----~~~----~f~~~~~~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEG----KLN----EFREKYRKK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhcc----cHH----HHHHHHHhc
Confidence 456999999999999999999998752 2222 4556543 34555555554321 122 233344445
Q ss_pred CeEEEEeCCCCccc---cc-ccc--CC-CCCCCceEEEEee-chh----hhhc------CCceEEcccCChHHHHHHHHH
Q 045843 260 SYVLFLDEVSTEIN---LR-DIG--IH-DEHKNGKVVFACI-FRN----ICGQ------IDEEVNVQRLSGKDAQKLFWE 321 (913)
Q Consensus 260 r~LlVlDdv~~~~~---~~-~~~--~~-~~~~~s~iivTTR-~~~----v~~~------~~~~~~l~~L~~~~~~~Lf~~ 321 (913)
.-+|++||+..... +. .+. +. -...|..||+||. ... +... .+..+.+++.+.++-.+++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 66999999985321 11 111 00 1233457888885 221 1111 355889999999999999998
Q ss_pred HhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHH------HhhcC-CChHHHHHHHHhh
Q 045843 322 TVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGS------SLANV-SNPAIWRDMLSQL 374 (913)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~------~l~~~-~~~~~w~~~~~~l 374 (913)
.+... ...--+++..-|++.+.|.--.+.-+-. .+.++ .+.+.-+.++..+
T Consensus 275 ~~~~~--~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 275 MLEIE--HGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHhc--CCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 87543 2223467888888888876433322221 11222 5667777777654
No 152
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.55 E-value=0.00091 Score=75.67 Aligned_cols=161 Identities=15% Similarity=0.326 Sum_probs=90.8
Q ss_pred cCccccccchHHHHHHHHHHHhc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccC---CCceEEEEEe
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRN-------------VGTKRICIWGPPGVGKTTIMENLHDAIGESR---QFDFIFWVTV 219 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~F~~~~wv~v 219 (913)
...+.++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++...... .+....|+.+
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 33445677899999988887621 2345689999999999999999999875211 1123344444
Q ss_pred CCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCcc---------ccc-----ccc--CC--
Q 045843 220 NSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTEI---------NLR-----DIG--IH-- 280 (913)
Q Consensus 220 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~-----~~~--~~-- 280 (913)
... ++ +...... .......+....++.. .+++.+|+||+++... +.+ .+. +.
T Consensus 258 ~~~----eL----l~kyvGe-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 258 KGP----EL----LNKYVGE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred cch----hh----cccccch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 331 11 1100000 0001111222222221 3578999999998531 111 110 01
Q ss_pred CCCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCC
Q 045843 281 DEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGV 325 (913)
Q Consensus 281 ~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~ 325 (913)
....+..||.||........ .+..++++..+.++..++|.++...
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 12234456666655433221 3557999999999999999988653
No 153
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.55 E-value=0.0058 Score=74.49 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=81.7
Q ss_pred cccchHHHHHHHHHHHh------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLR------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
+++|.+..++.|.+++. ....+++.++|++|+|||++|+.+.+... ..|-. +.++...+..++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~--~~~~~---i~~~~~~~~~~i~g~--- 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN--RKFVR---FSLGGVRDEAEIRGH--- 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc--CCeEE---EeCCCcccHHHHcCC---
Confidence 46799999999988763 12345899999999999999999998875 33321 222332233222110
Q ss_pred HccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc---------cccccCC-------C-------CCCCceEEEE
Q 045843 235 RLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN---------LRDIGIH-------D-------EHKNGKVVFA 291 (913)
Q Consensus 235 ~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---------~~~~~~~-------~-------~~~~s~iivT 291 (913)
.....+.....+.+.+... ..++-+|+||+++.... +-.+.-+ + ...+.-+|.|
T Consensus 393 --~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~T 469 (775)
T TIGR00763 393 --RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIAT 469 (775)
T ss_pred --CCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEe
Confidence 0000111112223333333 23444889999876421 0010000 0 0122334445
Q ss_pred eechhh-hhc---CCceEEcccCChHHHHHHHHHHh
Q 045843 292 CIFRNI-CGQ---IDEEVNVQRLSGKDAQKLFWETV 323 (913)
Q Consensus 292 TR~~~v-~~~---~~~~~~l~~L~~~~~~~Lf~~~~ 323 (913)
|..... ... ....+.+.+++.++-.+++.+..
T Consensus 470 tN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 470 ANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred cCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 544321 111 33578889998888877776653
No 154
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.53 E-value=4.7e-06 Score=85.75 Aligned_cols=92 Identities=16% Similarity=0.090 Sum_probs=41.1
Q ss_pred ccccccEEeeccCcccccc---CchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccc-
Q 045843 774 SLIMLETLILKRCHGMKTL---FSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICH- 849 (913)
Q Consensus 774 ~l~~L~~L~L~~c~~l~~l---~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~- 849 (913)
.+++|+.|+|.++. ++.- .-...+..+|+|+.|++++|..-..=.......-...+|+|+.|.+.+|..-..-..
T Consensus 211 ~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~ 289 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA 289 (382)
T ss_pred hCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence 45566666665532 1111 001234455666666666664211000000001123467777777666532111000
Q ss_pred --cCccCCCCccEEeeecC
Q 045843 850 --NMSLAWPLLETITIKAC 866 (913)
Q Consensus 850 --~~~~~~p~L~~L~i~~C 866 (913)
......|.|++|++.+|
T Consensus 290 la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHhcchhhHHhcCCcc
Confidence 02334677777777776
No 155
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0022 Score=75.00 Aligned_cols=191 Identities=11% Similarity=0.118 Sum_probs=106.0
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.|.+++..+++. .+-++|+.|+||||+|+.+.+..--....+. ..++.-.....|...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g 85 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEG 85 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcC
Confidence 44567889999999999999877765 4579999999999999999877532111100 000000000011000
Q ss_pred ccC-----C-ccCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCccc--cccccC--CCCCCCceEE-EEeechhhhh
Q 045843 236 LDL-----R-AEDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEIN--LRDIGI--HDEHKNGKVV-FACIFRNICG 299 (913)
Q Consensus 236 l~~-----~-~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~--~~~~~~--~~~~~~s~ii-vTTR~~~v~~ 299 (913)
-.. . ......++. +.+.+.+ .+++-++|+|++..... ...+.- ......+.+| +||....+..
T Consensus 86 ~~~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 000 0 000111111 1222222 24566899999976432 222211 1222345555 4554455543
Q ss_pred c---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcH-HHHHHHHHH
Q 045843 300 Q---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMP-HMIKLIGSS 357 (913)
Q Consensus 300 ~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlP-lai~~~~~~ 357 (913)
. ....+.+.+++.++....+...+... ...--++....|++.++|.. .|+..+-.+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~e--gi~i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQE--GISISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3 45678899999999888877665432 22233567788999999866 455555443
No 156
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.48 E-value=0.004 Score=71.55 Aligned_cols=177 Identities=11% Similarity=0.114 Sum_probs=102.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKS 260 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 260 (913)
...+.|+|..|+|||.|++.+++.......-..++++.. .++..++...+... . ...+++.+++ -
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~----~----~~~f~~~y~~-~ 378 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG----K----GDSFRRRYRE-M 378 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc----c----HHHHHHHhhc-C
Confidence 356899999999999999999998752111123455543 33444444433211 1 1123333332 3
Q ss_pred eEEEEeCCCCcc---ccccccCC----CCCCCceEEEEeech--h-------hhhc--CCceEEcccCChHHHHHHHHHH
Q 045843 261 YVLFLDEVSTEI---NLRDIGIH----DEHKNGKVVFACIFR--N-------ICGQ--IDEEVNVQRLSGKDAQKLFWET 322 (913)
Q Consensus 261 ~LlVlDdv~~~~---~~~~~~~~----~~~~~s~iivTTR~~--~-------v~~~--~~~~~~l~~L~~~~~~~Lf~~~ 322 (913)
=+|||||+.... .|+...+. -...|..|||||+.. . +... ...++.+...+.+.-.+++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 588999998642 23322121 223456788888752 1 1111 5678999999999999999998
Q ss_pred hCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHh------hcC-CChHHHHHHHHhh
Q 045843 323 VGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSL------ANV-SNPAIWRDMLSQL 374 (913)
Q Consensus 323 ~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l------~~~-~~~~~w~~~~~~l 374 (913)
+... .-.--+++..-|++++.+..-.+.-+-..| .++ .+.+.-+.+++.+
T Consensus 459 a~~r--~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 459 AVQE--QLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHhc--CCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 7653 222345677778887776543332222111 122 4555556666554
No 157
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.0051 Score=72.19 Aligned_cols=192 Identities=11% Similarity=0.086 Sum_probs=106.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCC-cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGT-KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.|..++...+. ..+-++|+.|+||||+|+.+++..--...... . ...+..-+..+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHhcC
Confidence 3455678999999999999977654 57789999999999999999987642111100 0 0011111122222211
Q ss_pred ccCCc------cCCChHHHHHHHHHH----HccCCeEEEEeCCCCcc--ccccccCC--CCCCCceEEEEee-chhhhhc
Q 045843 236 LDLRA------EDHNIDQRADMISEE----LKDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGKVVFACI-FRNICGQ 300 (913)
Q Consensus 236 l~~~~------~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~iivTTR-~~~v~~~ 300 (913)
..... .....++..+.+... ..+++-++|+|++.... .+..+... .....+.+|++|. ...+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 11100 011222222222111 12566799999998643 23333111 2223344444443 3333222
Q ss_pred ---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHH
Q 045843 301 ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIG 355 (913)
Q Consensus 301 ---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 355 (913)
....+.+..++.++....+.+.+... ...--.+....|++.++|.+..+..+-
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~ke--gi~is~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKE--SIEIEPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45678889999998888777765432 111224568899999999886554443
No 158
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.47 E-value=4.7e-05 Score=86.07 Aligned_cols=88 Identities=28% Similarity=0.360 Sum_probs=45.8
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEE
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEIL 604 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L 604 (913)
..+++|..|++.+|.+.++... +..+++|++|++++|.|+.+.. +..+..|+.|++++ +.+..++ .+..+.+|+.+
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSG-NLISDIS-GLESLKSLKLL 167 (414)
T ss_pred ccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc-hhhccchhhheecc-Ccchhcc-CCccchhhhcc
Confidence 3445555555555555544432 2445555566666555555532 44555555555555 4444443 24445555555
Q ss_pred ecCCCcCCcCCC
Q 045843 605 DLSHTGICCLPS 616 (913)
Q Consensus 605 ~L~~~~~~~lp~ 616 (913)
++++|.+..++.
T Consensus 168 ~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 168 DLSYNRIVDIEN 179 (414)
T ss_pred cCCcchhhhhhh
Confidence 665555544443
No 159
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.0047 Score=71.85 Aligned_cols=186 Identities=16% Similarity=0.134 Sum_probs=103.9
Q ss_pred CccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.+.+++...... .+-++|+.|+||||+|+.+.+..-....-+ ...++.-...+.|...
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNG 85 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcC
Confidence 44567889999999999999776655 466799999999999999986653211100 0000100111111111
Q ss_pred ccCCc------cCCChHHHHHHHHHH-----HccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEE-EEeechhhhh
Q 045843 236 LDLRA------EDHNIDQRADMISEE-----LKDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVV-FACIFRNICG 299 (913)
Q Consensus 236 l~~~~------~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~ii-vTTR~~~v~~ 299 (913)
..... .....++.. .+.+. ..+++-++|+|++.... .+..+.- ........+| .||....+..
T Consensus 86 ~~~dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 00000 001122111 22222 13567789999998642 2333211 1222234444 4444444432
Q ss_pred c---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHH
Q 045843 300 Q---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIK 352 (913)
Q Consensus 300 ~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 352 (913)
. ....+.+.+++.++....+...+... ...--.+....|++.++|.+..+.
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~e--gi~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKE--GIEYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHH
Confidence 2 45678899999999988888776432 112234677888999998875443
No 160
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.46 E-value=0.0011 Score=70.18 Aligned_cols=128 Identities=15% Similarity=0.162 Sum_probs=69.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeE
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYV 262 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~L 262 (913)
.+.++|++|+||||+|+.++.............++.++. .++ ...+... ........+.+ -..-+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~----~~~~~~~~~~~---a~~gv 124 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGH----TAPKTKEILKR---AMGGV 124 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhccc----chHHHHHHHHH---ccCcE
Confidence 588999999999999988776554222222223555542 122 2222111 11111122222 13468
Q ss_pred EEEeCCCCc------cccc-----ccc--CCCCCCCceEEEEeechhhhh----------cCCceEEcccCChHHHHHHH
Q 045843 263 LFLDEVSTE------INLR-----DIG--IHDEHKNGKVVFACIFRNICG----------QIDEEVNVQRLSGKDAQKLF 319 (913)
Q Consensus 263 lVlDdv~~~------~~~~-----~~~--~~~~~~~s~iivTTR~~~v~~----------~~~~~~~l~~L~~~~~~~Lf 319 (913)
|+||++... .+|. .+. ......+.+||+++....... .....+++++++.+|-.+++
T Consensus 125 L~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~ 204 (284)
T TIGR02880 125 LFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIA 204 (284)
T ss_pred EEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHH
Confidence 999999732 1221 111 113334556667665332211 13567999999999999998
Q ss_pred HHHhCC
Q 045843 320 WETVGV 325 (913)
Q Consensus 320 ~~~~~~ 325 (913)
.+.+..
T Consensus 205 ~~~l~~ 210 (284)
T TIGR02880 205 GLMLKE 210 (284)
T ss_pred HHHHHH
Confidence 887643
No 161
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00072 Score=63.50 Aligned_cols=110 Identities=21% Similarity=0.209 Sum_probs=60.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccC-C
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDK-S 260 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k-r 260 (913)
..+.|+|++|+||||+++.++...... ....+++..+........... ...................+.+..+.. .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999877622 223455554443222222111 111111111222233333444444443 4
Q ss_pred eEEEEeCCCCcccccccc-----------CC-CCCCCceEEEEeec
Q 045843 261 YVLFLDEVSTEINLRDIG-----------IH-DEHKNGKVVFACIF 294 (913)
Q Consensus 261 ~LlVlDdv~~~~~~~~~~-----------~~-~~~~~s~iivTTR~ 294 (913)
.+|++|+++......... .. ....+..+|.|+..
T Consensus 80 ~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 80 DVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 999999999865433211 11 33455667777764
No 162
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.43 E-value=7.1e-06 Score=91.67 Aligned_cols=106 Identities=21% Similarity=0.221 Sum_probs=66.9
Q ss_pred CHHhhhhhceeeeccccccCCCCC-CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcc
Q 045843 501 SEEEWEVANRISLIRMCLSTLPKR-PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLK 578 (913)
Q Consensus 501 ~~~~~~~~~~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~ 578 (913)
+...|.++...++.+|.+..+... .-++.|+.|+|++|.+++.. .+..+++|+.|||++|.++.+|.. ...+. |+
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-he
Confidence 344566666667766665544333 33466777777777666654 356777777777777777766641 22333 77
Q ss_pred eeecCCccCccccChhhhccccCCEEecCCCcC
Q 045843 579 ALFLNNCCQLMRLPAEVGDLHNLEILDLSHTGI 611 (913)
Q Consensus 579 ~L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~ 611 (913)
.|+|++ +.++.|- .+.+|++|+.||++.|-+
T Consensus 236 ~L~lrn-N~l~tL~-gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 236 LLNLRN-NALTTLR-GIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred eeeecc-cHHHhhh-hHHhhhhhhccchhHhhh
Confidence 777777 5566654 467777777777777655
No 163
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.43 E-value=0.009 Score=67.40 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=88.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKS 260 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 260 (913)
...+.|+|+.|+|||+|++.+++.... ....+++++ ...+...+...+... . ...+++.++ +.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~------~~~f~~~~~~~l~~~----~----~~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVR------SELFTEHLVSAIRSG----E----MQRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEee------HHHHHHHHHHHHhcc----h----HHHHHHHcc-cC
Confidence 457899999999999999999998752 223344443 234444555544321 1 122333333 44
Q ss_pred eEEEEeCCCCccc--c-c-cccCC---CCCCCceEEEEeech-h----hhhc------CCceEEcccCChHHHHHHHHHH
Q 045843 261 YVLFLDEVSTEIN--L-R-DIGIH---DEHKNGKVVFACIFR-N----ICGQ------IDEEVNVQRLSGKDAQKLFWET 322 (913)
Q Consensus 261 ~LlVlDdv~~~~~--~-~-~~~~~---~~~~~s~iivTTR~~-~----v~~~------~~~~~~l~~L~~~~~~~Lf~~~ 322 (913)
-+|++||+..... + . .+... -...|..||+||... . +... .+..+.+.+++.++-..++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5888999876432 1 1 11111 112356788888542 1 1111 3468899999999999999988
Q ss_pred hCCCCCCCCChHHHHHHHHHHhCCc
Q 045843 323 VGVQLKDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 323 ~~~~~~~~~~~~~~~~~I~~~c~Gl 347 (913)
+... ...--+++..-|++.+.|.
T Consensus 284 ~~~~--~~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 284 AEAL--SIRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHc--CCCCCHHHHHHHHHhcCCC
Confidence 7543 2223356666677777644
No 164
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.42 E-value=2.8e-05 Score=87.87 Aligned_cols=104 Identities=28% Similarity=0.304 Sum_probs=79.6
Q ss_pred CCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEEe
Q 045843 526 KCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEILD 605 (913)
Q Consensus 526 ~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~ 605 (913)
.+..+..+.+..|.+..+... +..+++|.+|++.+|.|..+...+..+.+|++|++++ +.|..+. .+..|..|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcc-cccccceeeeeccccchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhhe
Confidence 345556666666666553332 3788999999999999998877788999999999999 7888886 588888999999
Q ss_pred cCCCcCCcCCCccccccccccccccceeeccccc
Q 045843 606 LSHTGICCLPSEIDLTTLCFYFPNVGLLQNFINA 639 (913)
Q Consensus 606 L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~ 639 (913)
+++|.+..++..-.+. .|+.+++..+.
T Consensus 147 l~~N~i~~~~~~~~l~-------~L~~l~l~~n~ 173 (414)
T KOG0531|consen 147 LSGNLISDISGLESLK-------SLKLLDLSYNR 173 (414)
T ss_pred eccCcchhccCCccch-------hhhcccCCcch
Confidence 9999986665433455 77777776663
No 165
>CHL00176 ftsH cell division protein; Validated
Probab=97.41 E-value=0.0036 Score=73.46 Aligned_cols=167 Identities=14% Similarity=0.252 Sum_probs=95.6
Q ss_pred ccccccchHHHHHHHHHH---HhcC---------CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCH
Q 045843 158 KMEEVPSLNKHLKMLQEC---LRNV---------GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNI 225 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~---L~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (913)
.+.++.|.++..+++.+. +... ..+-+.++|++|+|||++|+.+++... .. |+.++..
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~s--- 250 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISGS--- 250 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccHH---
Confidence 344677887766665544 3321 234689999999999999999998764 22 3333221
Q ss_pred HHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc------------cc----cccc--CC--CCCCC
Q 045843 226 RDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI------------NL----RDIG--IH--DEHKN 285 (913)
Q Consensus 226 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~~----~~~~--~~--~~~~~ 285 (913)
++.... . +.........+.......+.+|++||++... .. ..+. .. ....+
T Consensus 251 -~f~~~~---~-----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 -EFVEMF---V-----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred -HHHHHh---h-----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111000 0 0111222333444445678999999996431 11 1111 00 23345
Q ss_pred ceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC
Q 045843 286 GKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGG 346 (913)
Q Consensus 286 s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~G 346 (913)
-.||.||........ .+..+.++..+.++-.++++.++.... .........+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSPDVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cchhHHHHHHHhcCCC
Confidence 567777766443222 346788888899999999988775421 1122345677788777
No 166
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.38 E-value=0.002 Score=79.28 Aligned_cols=154 Identities=17% Similarity=0.214 Sum_probs=89.2
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC----CceEEEEEeCCCCCHHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQ----FDFIFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~ 233 (913)
....++||+.++++++..|.......+.++|++|+|||++|+.+..+..-... ....+|.. ++..+.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~---- 241 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI---- 241 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh----
Confidence 34467899999999999997766667779999999999999999887631111 12233321 111111
Q ss_pred HHccCCccCCChHHHHHHHHHHH-c-cCCeEEEEeCCCCccc---------cccccCCCCCCC-ceEEEEeechhh----
Q 045843 234 KRLDLRAEDHNIDQRADMISEEL-K-DKSYVLFLDEVSTEIN---------LRDIGIHDEHKN-GKVVFACIFRNI---- 297 (913)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~~---------~~~~~~~~~~~~-s~iivTTR~~~v---- 297 (913)
. +.... .+.+.....+.+.+ + +++.+|++|++..... ...+..|....| -++|-+|..+..
T Consensus 242 a--~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~ 318 (852)
T TIGR03346 242 A--GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYI 318 (852)
T ss_pred h--cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHh
Confidence 0 00011 12222333333333 2 4689999999985321 122233422233 345545544432
Q ss_pred hhc-----CCceEEcccCChHHHHHHHHHHh
Q 045843 298 CGQ-----IDEEVNVQRLSGKDAQKLFWETV 323 (913)
Q Consensus 298 ~~~-----~~~~~~l~~L~~~~~~~Lf~~~~ 323 (913)
... ...++.++..+.++..+++....
T Consensus 319 ~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 319 EKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 111 34578899999999999887653
No 167
>PRK08118 topology modulation protein; Reviewed
Probab=97.34 E-value=0.00013 Score=70.65 Aligned_cols=35 Identities=31% Similarity=0.703 Sum_probs=29.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhccc-CCCceEEE
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGES-RQFDFIFW 216 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~w 216 (913)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368999999999999999999998754 56777775
No 168
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.33 E-value=0.0038 Score=76.46 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=87.8
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccC---C-CceEE-EEEeCCCCCHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESR---Q-FDFIF-WVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~-F~~~~-wv~vs~~~~~~~i~~~i 232 (913)
....++||+.+++.+++.|.......+.++|++|+|||++|+.+.....-.. . ....+ ++.++. +.
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~--- 246 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 246 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh---
Confidence 3446789999999999999777777788999999999999999988763111 0 12222 222222 10
Q ss_pred HHHccCCccCCChHHHHHHHHHHH--ccCCeEEEEeCCCCcc---------ccccccCCCCCC-CceEEEEeechhh---
Q 045843 233 LKRLDLRAEDHNIDQRADMISEEL--KDKSYVLFLDEVSTEI---------NLRDIGIHDEHK-NGKVVFACIFRNI--- 297 (913)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---------~~~~~~~~~~~~-~s~iivTTR~~~v--- 297 (913)
. +.... .+.++....+-+.+ .+++.+|++|++.... +...+..|.-.+ .-++|-||..+..
T Consensus 247 -a--g~~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~ 322 (857)
T PRK10865 247 -A--GAKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQY 322 (857)
T ss_pred -h--ccchh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHH
Confidence 0 00011 12222222222222 2578999999988642 122333442223 3455555554432
Q ss_pred -hhc-----CCceEEcccCChHHHHHHHHHHh
Q 045843 298 -CGQ-----IDEEVNVQRLSGKDAQKLFWETV 323 (913)
Q Consensus 298 -~~~-----~~~~~~l~~L~~~~~~~Lf~~~~ 323 (913)
... ....+.+..-+.++...+++...
T Consensus 323 ~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 323 IEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred hhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 111 23356677778899988886543
No 169
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0087 Score=62.69 Aligned_cols=182 Identities=18% Similarity=0.302 Sum_probs=107.6
Q ss_pred ccccCccccccchHHHHHHHHHHHh-------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEe
Q 045843 153 KKHAKKMEEVPSLNKHLKMLQECLR-------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTV 219 (913)
Q Consensus 153 ~~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 219 (913)
..|...+.++=|-++.+++|.+.+. -...+-|-++|++|.|||-||++|++... .. |+.|
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--At-----FIrv 216 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--AT-----FIRV 216 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ce-----EEEe
Confidence 3444555566688999999888772 13456789999999999999999999876 33 4444
Q ss_pred CCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHc-cCCeEEEEeCCCCcc----------c--ccc-----c----
Q 045843 220 NSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELK-DKSYVLFLDEVSTEI----------N--LRD-----I---- 277 (913)
Q Consensus 220 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~----------~--~~~-----~---- 277 (913)
... +-+++-| | +-..+...+.+.-+ ..+..|.+|+++..- + ... +
T Consensus 217 vgS---ElVqKYi----G------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 217 VGS---ELVQKYI----G------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD 283 (406)
T ss_pred ccH---HHHHHHh----c------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhcc
Confidence 332 1111111 1 11233333333333 468899999987521 0 000 0
Q ss_pred cCCCCCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCcH-
Q 045843 278 GIHDEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGMP- 348 (913)
Q Consensus 278 ~~~~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~GlP- 348 (913)
++ +....-|||..|...++... .+..++++.=+.+--.++|+-++..- ....-+++ .+++.|.|.-
T Consensus 284 GF-D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sG 358 (406)
T COG1222 284 GF-DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSG 358 (406)
T ss_pred CC-CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCch
Confidence 11 34556799998887665443 45678887444444456666665443 22334554 4555666653
Q ss_pred ---HHHHHHHHHhh
Q 045843 349 ---HMIKLIGSSLA 359 (913)
Q Consensus 349 ---lai~~~~~~l~ 359 (913)
.||.+=|++++
T Consensus 359 AdlkaictEAGm~A 372 (406)
T COG1222 359 ADLKAICTEAGMFA 372 (406)
T ss_pred HHHHHHHHHHhHHH
Confidence 56666666654
No 170
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.011 Score=63.37 Aligned_cols=188 Identities=12% Similarity=0.115 Sum_probs=107.7
Q ss_pred cccccchHHHHHHHHHHHhcCCC-cEEEEECCCCCcHHHHHHHHHHHhcccC-------------CCceEEEEEeCCCCC
Q 045843 159 MEEVPSLNKHLKMLQECLRNVGT-KRICIWGPPGVGKTTIMENLHDAIGESR-------------QFDFIFWVTVNSEGN 224 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~-------------~F~~~~wv~vs~~~~ 224 (913)
+.+++|.+..++.+.+.+..+.+ +..-++|+.|+||+++|..+.+..--.. ...-..|+.-....+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 34678999999999999987765 6899999999999999988876653211 112233433210000
Q ss_pred HHHHHHHHHHHccCC--c-cCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCccc--cccc----cCCCCCCCceEEE
Q 045843 225 IRDIQEVLLKRLDLR--A-EDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEIN--LRDI----GIHDEHKNGKVVF 290 (913)
Q Consensus 225 ~~~i~~~i~~~l~~~--~-~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~--~~~~----~~~~~~~~s~iiv 290 (913)
-..+-.+-++..+.. . ..-.+++ ++.+.+.+ .+++-++|+|++..... ...+ .-|. +..-|++
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp--~~~fILi 159 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG--NGTLILI 159 (314)
T ss_pred ccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC--CCeEEEE
Confidence 000111111122210 0 1111222 23344444 35778999999876432 2222 2222 3333444
Q ss_pred Eeechhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 291 ACIFRNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 291 TTR~~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
|++.+.+..- ....+.+.++++++..+.+.+..... ........++..++|.|..+...
T Consensus 160 ~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-----cchhHHHHHHHHcCCCHHHHHHH
Confidence 4444444332 56789999999999999998874321 11112367899999999655543
No 171
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.0058 Score=66.68 Aligned_cols=254 Identities=13% Similarity=0.140 Sum_probs=136.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDK 259 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 259 (913)
....+.|+|..|.|||.|++++.+... .+......+.++.. ......+..+.. ...+..++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~--~~~~~a~v~y~~se----~f~~~~v~a~~~--------~~~~~Fk~~y--~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL--ANGPNARVVYLTSE----DFTNDFVKALRD--------NEMEKFKEKY--S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH--hhCCCceEEeccHH----HHHHHHHHHHHh--------hhHHHHHHhh--c
Confidence 477999999999999999999999887 55554444444332 233333332221 2234455555 3
Q ss_pred CeEEEEeCCCCcc---ccccccCC----CCCCCceEEEEeech---------hhhhc--CCceEEcccCChHHHHHHHHH
Q 045843 260 SYVLFLDEVSTEI---NLRDIGIH----DEHKNGKVVFACIFR---------NICGQ--IDEEVNVQRLSGKDAQKLFWE 321 (913)
Q Consensus 260 r~LlVlDdv~~~~---~~~~~~~~----~~~~~s~iivTTR~~---------~v~~~--~~~~~~l~~L~~~~~~~Lf~~ 321 (913)
-=++++||++-.. .|+...+. -...|-.||+|++.. .+... .+-++.+.+.+.+.....+.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 4488999998732 33332222 223444899998642 12222 567899999999999999999
Q ss_pred HhCCCCCCCCChHHHHHHHHHHhC----CcHHHHHHHHHH-hhc--CCChHHHHHHHHhhcCCCCCCCCchHHHHHHHHH
Q 045843 322 TVGVQLKDCRDIKPVARLIINECG----GMPHMIKLIGSS-LAN--VSNPAIWRDMLSQLRSPSMAPKQELEEVYKSFKL 394 (913)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~I~~~c~----GlPlai~~~~~~-l~~--~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~ 394 (913)
.+.... ..--+++..-|++... -+.-|+..+..+ +.. ..+.+.-+.++..+.. .... -..++|..+..-
T Consensus 256 ka~~~~--~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~-~~~~-itie~I~~~Va~ 331 (408)
T COG0593 256 KAEDRG--IEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR-AGEK-ITIEDIQKIVAE 331 (408)
T ss_pred HHHhcC--CCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc-cccc-CCHHHHHHHHHH
Confidence 775441 1112334444443332 223333332222 111 2455666666655544 2222 222444444332
Q ss_pred hccCCchhHHHHhhhhccccCCccccHHHHHHHHHhcCchhhhcchHHHHHHHHHHHHHHHHhcccccCCCccccchhHH
Q 045843 395 VCDKLPSDKQLCLLYWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEARDRGQSILDEFVKKSLLEKGRKASHYKMFEH 474 (913)
Q Consensus 395 sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~mHdl 474 (913)
-|+ |+.+++..- ........++++|--...+|.++||.+....-+ +=|.-
T Consensus 332 ~y~---------------------v~~~dl~s~-------~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~Fg--rdHtT 381 (408)
T COG0593 332 YYN---------------------VKVSDLLSK-------SRTRNIVRPRQIAMYLARELTNLSLPEIGKAFG--RDHTT 381 (408)
T ss_pred HhC---------------------CCHHHhhcc-------ccccccchHHHHHHHHHHHHccCcHHHHHHHhC--CCccH
Confidence 222 222222110 000133456777777788899999888755222 44444
Q ss_pred HHHHHHHHh
Q 045843 475 FQRAALRIA 483 (913)
Q Consensus 475 v~~~a~~i~ 483 (913)
|-.-++.|.
T Consensus 382 V~~a~~kI~ 390 (408)
T COG0593 382 VLHAVRKIE 390 (408)
T ss_pred HHHHHHHHH
Confidence 444444443
No 172
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.30 E-value=0.0012 Score=78.81 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=89.1
Q ss_pred ccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccC-C---CceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 160 EEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESR-Q---FDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..++||+++++++++.|......-+.++|++|+|||++|+.++....... . .++.+|.. +... ++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----ll-- 254 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LL-- 254 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hh--
Confidence 45789999999999999776556667899999999999999987652111 1 13444421 1111 11
Q ss_pred ccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCcc----------ccccccCC-CCCCCceEEEEeechhhh----h
Q 045843 236 LDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTEI----------NLRDIGIH-DEHKNGKVVFACIFRNIC----G 299 (913)
Q Consensus 236 l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~~~~~~~~-~~~~~s~iivTTR~~~v~----~ 299 (913)
.+.....+.+.....+.+.+ +.++.+|++|++.... +...+..| .....-++|-+|...... .
T Consensus 255 -aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~ 333 (758)
T PRK11034 255 -AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEK 333 (758)
T ss_pred -cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhc
Confidence 11111112233333333333 3567899999997521 11122223 122234455555443321 1
Q ss_pred c-----CCceEEcccCChHHHHHHHHHHh
Q 045843 300 Q-----IDEEVNVQRLSGKDAQKLFWETV 323 (913)
Q Consensus 300 ~-----~~~~~~l~~L~~~~~~~Lf~~~~ 323 (913)
. ....+.+++.+.+++.++++...
T Consensus 334 D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 334 DRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 34589999999999999988654
No 173
>PRK08116 hypothetical protein; Validated
Probab=97.29 E-value=0.00089 Score=70.23 Aligned_cols=99 Identities=13% Similarity=0.232 Sum_probs=58.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCe
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSY 261 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~ 261 (913)
..+.++|..|+|||.||..+++... .+-..+++++ ..+++..|........ ..+.. .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~~------~~~ll~~i~~~~~~~~-~~~~~----~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFVN------FPQLLNRIKSTYKSSG-KEDEN----EIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhccc-cccHH----HHHHHhcCCC-
Confidence 4589999999999999999999886 3334455554 3445555554443211 11112 2233344333
Q ss_pred EEEEeCCCC--cccccccc-CC----CCCCCceEEEEeec
Q 045843 262 VLFLDEVST--EINLRDIG-IH----DEHKNGKVVFACIF 294 (913)
Q Consensus 262 LlVlDdv~~--~~~~~~~~-~~----~~~~~s~iivTTR~ 294 (913)
||||||+.. ..+|..-. +. --..+..+|+||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 899999953 34454311 11 12356679999964
No 174
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.29 E-value=0.0027 Score=70.70 Aligned_cols=131 Identities=21% Similarity=0.188 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC-CHHHHHHHHHHHccCCccCC
Q 045843 165 LNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLRAEDH 243 (913)
Q Consensus 165 r~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~ 243 (913)
|..-..++++.+..... ++.|.|+-++||||+++.+..... +. .+++..-+.. +-.++ .+.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~--~~---~iy~~~~d~~~~~~~l-~d~----------- 83 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL--EE---IIYINFDDLRLDRIEL-LDL----------- 83 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC--cc---eEEEEecchhcchhhH-HHH-----------
Confidence 33445555555544333 999999999999999977765554 22 4444433321 11111 111
Q ss_pred ChHHHHHHHHHHHccCCeEEEEeCCCCccccccccCC--CCCCCceEEEEeechhhhhc--------CCceEEcccCChH
Q 045843 244 NIDQRADMISEELKDKSYVLFLDEVSTEINLRDIGIH--DEHKNGKVVFACIFRNICGQ--------IDEEVNVQRLSGK 313 (913)
Q Consensus 244 ~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~--~~~~~s~iivTTR~~~v~~~--------~~~~~~l~~L~~~ 313 (913)
...+.+.-..++..|+||+|....+|+...-. +..+. +|++|+-+...-.. ....+.+.|||-.
T Consensus 84 -----~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 84 -----LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred -----HHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 11111111227789999999999999875322 44444 88888887655333 3467899999988
Q ss_pred HHHHHH
Q 045843 314 DAQKLF 319 (913)
Q Consensus 314 ~~~~Lf 319 (913)
|-..+-
T Consensus 158 Efl~~~ 163 (398)
T COG1373 158 EFLKLK 163 (398)
T ss_pred HHHhhc
Confidence 886653
No 175
>PRK08181 transposase; Validated
Probab=97.26 E-value=0.0025 Score=66.49 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=57.0
Q ss_pred HHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHH
Q 045843 174 ECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMIS 253 (913)
Q Consensus 174 ~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 253 (913)
+|+.. ...+.++|++|+|||.||..+.+... .+...++|+.+ .++...+.... ...........
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~~------~~L~~~l~~a~----~~~~~~~~l~~-- 164 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTRT------TDLVQKLQVAR----RELQLESAIAK-- 164 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeeeH------HHHHHHHHHHH----hCCcHHHHHHH--
Confidence 45543 34699999999999999999988764 33334555543 44555553321 11122222222
Q ss_pred HHHccCCeEEEEeCCCCc--cccc-cccCC---CCCCCceEEEEeech
Q 045843 254 EELKDKSYVLFLDEVSTE--INLR-DIGIH---DEHKNGKVVFACIFR 295 (913)
Q Consensus 254 ~~l~~kr~LlVlDdv~~~--~~~~-~~~~~---~~~~~s~iivTTR~~ 295 (913)
+ .+.=|||+||+... ..+. ...+. ....+..+||||...
T Consensus 165 --l-~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 165 --L-DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred --H-hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 2 24559999999653 2222 12111 111124688888643
No 176
>PRK10536 hypothetical protein; Provisional
Probab=97.22 E-value=0.0049 Score=62.82 Aligned_cols=135 Identities=15% Similarity=0.123 Sum_probs=73.9
Q ss_pred ccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE--e--CCC-----CCHHH---
Q 045843 160 EEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT--V--NSE-----GNIRD--- 227 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~--v--s~~-----~~~~~--- 227 (913)
..+.++......++.++.+. .++.+.|+.|+|||+||..+..+.-..+.|+..+-+. + .+. -+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 34557888888888888664 4999999999999999999887542224454433322 1 110 01111
Q ss_pred -HHHHHHHHccCCccCCChHHHHH--------HHHHHHccCCe---EEEEeCCCCccccccc-cCCCCCCCceEEEEeec
Q 045843 228 -IQEVLLKRLDLRAEDHNIDQRAD--------MISEELKDKSY---VLFLDEVSTEINLRDI-GIHDEHKNGKVVFACIF 294 (913)
Q Consensus 228 -i~~~i~~~l~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdv~~~~~~~~~-~~~~~~~~s~iivTTR~ 294 (913)
...-|.+.+..-......+.... .=-.+++|+.+ +||+|+..+...-..- .+-..+.+|++|+|--.
T Consensus 133 p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~ 212 (262)
T PRK10536 133 PYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDI 212 (262)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCCh
Confidence 12222222211101111111100 00235667655 9999999886542211 11234579999988654
Q ss_pred hh
Q 045843 295 RN 296 (913)
Q Consensus 295 ~~ 296 (913)
.+
T Consensus 213 ~Q 214 (262)
T PRK10536 213 TQ 214 (262)
T ss_pred hh
Confidence 44
No 177
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.016 Score=65.86 Aligned_cols=153 Identities=20% Similarity=0.266 Sum_probs=93.0
Q ss_pred cccchHHHHHHHHHHHh------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLR------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
+-+|.++.+++|++++. ..+-+++..+|++|+|||++|+.|+.-.. +.|. -+.|+.-.|+.+|...=-.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkFf---RfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKFF---RFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--CceE---EEeccccccHHhhccccee
Confidence 45799999999999983 23567999999999999999999998876 4442 2345555555554321111
Q ss_pred HccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc---------ccccccCCC------------CCCCceEEEEee
Q 045843 235 RLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI---------NLRDIGIHD------------EHKNGKVVFACI 293 (913)
Q Consensus 235 ~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------~~~~~~~~~------------~~~~s~iivTTR 293 (913)
.++. -...+++.|+. .+...-|+.+|+|+..- .+-++..|. .-.=|+|++...
T Consensus 487 YVGA-----MPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicT 560 (906)
T KOG2004|consen 487 YVGA-----MPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICT 560 (906)
T ss_pred eecc-----CChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEe
Confidence 1110 01122333332 34567899999998631 111222221 112367776554
Q ss_pred chhhhhc------CCceEEcccCChHHHHHHHHHHhC
Q 045843 294 FRNICGQ------IDEEVNVQRLSGKDAQKLFWETVG 324 (913)
Q Consensus 294 ~~~v~~~------~~~~~~l~~L~~~~~~~Lf~~~~~ 324 (913)
...+... .-..|++.+...+|-.++-.++.-
T Consensus 561 AN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 561 ANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred ccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 4433322 346888999888888887777653
No 178
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.18 E-value=0.00089 Score=67.80 Aligned_cols=35 Identities=40% Similarity=0.670 Sum_probs=30.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEe
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTV 219 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 219 (913)
.++|+|..|+||||++..+..... ..|..+.+++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 688999999999999999998876 88977776654
No 179
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.18 E-value=0.0021 Score=74.83 Aligned_cols=199 Identities=14% Similarity=0.166 Sum_probs=102.8
Q ss_pred cCccccccchHHHHHHHHHHHhcC-----CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeC---CCCCHHH
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRNV-----GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVN---SEGNIRD 227 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~~-----~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs---~~~~~~~ 227 (913)
+..+.+++|.++.++++..++... ...++.++|++|+||||+++.++.... ++..-|+.-. ...+...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~----~~~~Ew~npv~~~~~~~~~~ 155 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG----IQVQEWSNPTLPDFQKNDHK 155 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh----hHHHHHhhhhhhcccccccc
Confidence 344567889999999999998542 235699999999999999999997654 2222332110 0001111
Q ss_pred HHHHHHHHccCCccC-CChHHHHHHHHHH-------HccCCeEEEEeCCCCcc-----ccccccC-C--CCCCCceEEEE
Q 045843 228 IQEVLLKRLDLRAED-HNIDQRADMISEE-------LKDKSYVLFLDEVSTEI-----NLRDIGI-H--DEHKNGKVVFA 291 (913)
Q Consensus 228 i~~~i~~~l~~~~~~-~~~~~~~~~l~~~-------l~~kr~LlVlDdv~~~~-----~~~~~~~-~--~~~~~s~iivT 291 (913)
+...+..++...... ............. ..+++.+|++||+.+.. .+..+.. + ....-.-|++|
T Consensus 156 ~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~ 235 (637)
T TIGR00602 156 VTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFII 235 (637)
T ss_pred cchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEe
Confidence 112222222111111 1111111111111 13567899999995432 2223222 2 12222234444
Q ss_pred eech-------------------hhhhc-CCceEEcccCChHHHHHHHHHHhCCC-CCC-CC---ChHHHHHHHHHHhCC
Q 045843 292 CIFR-------------------NICGQ-IDEEVNVQRLSGKDAQKLFWETVGVQ-LKD-CR---DIKPVARLIINECGG 346 (913)
Q Consensus 292 TR~~-------------------~v~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~-~~---~~~~~~~~I~~~c~G 346 (913)
|-+. .+... ....+.+.+++..+-.+.+.+.+... ... .. .-.+....|+..++|
T Consensus 236 TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G 315 (637)
T TIGR00602 236 TESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSG 315 (637)
T ss_pred cCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCC
Confidence 4211 11111 22458899999999777777766433 100 11 123566777777777
Q ss_pred cHHHHHHHHHHh
Q 045843 347 MPHMIKLIGSSL 358 (913)
Q Consensus 347 lPlai~~~~~~l 358 (913)
---.+...-..+
T Consensus 316 DiRsAIn~LQf~ 327 (637)
T TIGR00602 316 DIRSAINSLQFS 327 (637)
T ss_pred hHHHHHHHHHHH
Confidence 764444444443
No 180
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.17 E-value=0.01 Score=71.73 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=85.5
Q ss_pred cccchHHHHHHHHHHHhc------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLRN------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
+.+|.+..++.|+++|.- ....++.++|++|+||||+|+.++.... ..|-. +..+...+..++...-..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~~~---i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKYVR---MALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEE---EEcCCCCCHHHhccchhc
Confidence 468999999999988841 2456899999999999999999998764 33321 233333343332221111
Q ss_pred HccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc-c-----ccc---cC--------------CCCCCCceEEEE
Q 045843 235 RLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN-L-----RDI---GI--------------HDEHKNGKVVFA 291 (913)
Q Consensus 235 ~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~-----~~~---~~--------------~~~~~~s~iivT 291 (913)
..+ .......+.+... ....-+++||+++.... . ..+ .- +..-...-+|.|
T Consensus 398 ~~g-----~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~T 471 (784)
T PRK10787 398 YIG-----SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVAT 471 (784)
T ss_pred cCC-----CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEc
Confidence 111 1111222223222 12445789999976321 1 100 01 111133444555
Q ss_pred eechhhhhc---CCceEEcccCChHHHHHHHHHHh
Q 045843 292 CIFRNICGQ---IDEEVNVQRLSGKDAQKLFWETV 323 (913)
Q Consensus 292 TR~~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~ 323 (913)
|....+... ...++.+.+++.+|-.++.+++.
T Consensus 472 aN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 472 SNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 544433222 34578889999888888887765
No 181
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.14 E-value=0.00052 Score=65.64 Aligned_cols=99 Identities=23% Similarity=0.284 Sum_probs=53.5
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC--ccccCccCcceeecCCcc
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP--SSISSLTNLKALFLNNCC 586 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp--~~i~~L~~L~~L~L~~c~ 586 (913)
..+.+.+|++..++..+.++.|.+|.+..|.++.+.+.+-..+++|..|-|.+|+|..+- ..+..++.|++|.+-+ +
T Consensus 45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~-N 123 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG-N 123 (233)
T ss_pred ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC-C
Confidence 345555666655555566666666666666666665555444555666666666655432 1244555566666555 3
Q ss_pred CccccCh----hhhccccCCEEecCC
Q 045843 587 QLMRLPA----EVGDLHNLEILDLSH 608 (913)
Q Consensus 587 ~l~~lP~----~i~~L~~L~~L~L~~ 608 (913)
.+...+. .+.++++|++||.++
T Consensus 124 pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 124 PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhcccCceeEEEEecCcceEeehhh
Confidence 3333221 244555555555543
No 182
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=8.9e-05 Score=74.65 Aligned_cols=60 Identities=28% Similarity=0.381 Sum_probs=41.6
Q ss_pred hcCCcccEEeccCCccc---ccCccccCccCcceeecCCcc---CccccChhhhccccCCEEecCCCcC
Q 045843 549 GYMCSLQLLDLHDTKIK---LLPSSISSLTNLKALFLNNCC---QLMRLPAEVGDLHNLEILDLSHTGI 611 (913)
Q Consensus 549 ~~l~~Lr~LdLs~~~i~---~lp~~i~~L~~L~~L~L~~c~---~l~~lP~~i~~L~~L~~L~L~~~~~ 611 (913)
..+++++.|||.+|.|. ++-.-+.+|++|++|+|+.|. .++.+| ..+.+|++|-|.++.+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGL 133 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCC
Confidence 45678899999999886 333445688889999988732 233333 2456888888887765
No 183
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.08 E-value=0.0013 Score=61.08 Aligned_cols=23 Identities=48% Similarity=0.887 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 045843 184 ICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 184 i~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57899999999999999999875
No 184
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.015 Score=64.91 Aligned_cols=95 Identities=17% Similarity=0.444 Sum_probs=63.3
Q ss_pred ccccccchHHHHHHHHHHHhc------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCH
Q 045843 158 KMEEVPSLNKHLKMLQECLRN------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNI 225 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (913)
.+.++=|.+..+.++.+++.. ...+-|-++|++|+|||.||+++++... +-++.++.+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-------vPf~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-------VPFLSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-------CceEeecch---
Confidence 345667899999988887721 1346788999999999999999999887 234444443
Q ss_pred HHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCc
Q 045843 226 RDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTE 271 (913)
Q Consensus 226 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 271 (913)
+|+..+. +.+++.+.+...+.-..-++++++||++-.
T Consensus 258 -----eivSGvS----GESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 -----EIVSGVS----GESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred -----hhhcccC----cccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 2332222 233333333344445568999999999863
No 185
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.019 Score=62.12 Aligned_cols=91 Identities=5% Similarity=0.023 Sum_probs=57.3
Q ss_pred cCCeEEEEeCCCCccc--cccccCC--CCCCCceEEEEeechh-hhhc---CCceEEcccCChHHHHHHHHHHhCCCCCC
Q 045843 258 DKSYVLFLDEVSTEIN--LRDIGIH--DEHKNGKVVFACIFRN-ICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKD 329 (913)
Q Consensus 258 ~kr~LlVlDdv~~~~~--~~~~~~~--~~~~~s~iivTTR~~~-v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 329 (913)
+++-++|+|++..... ...+.-. ....++.+|+||.+.. +..- ....+.+.+++.+++.+.+.+....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~---- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE---- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence 4566677899987432 2222111 2224666777776653 3222 4668999999999999998775311
Q ss_pred CCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 330 CRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 330 ~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
...+.+..++..++|.|..+..+
T Consensus 181 --~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 --SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --CChHHHHHHHHHcCCCHHHHHHH
Confidence 12344567889999999765544
No 186
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.01 E-value=0.00014 Score=64.93 Aligned_cols=103 Identities=19% Similarity=0.229 Sum_probs=83.5
Q ss_pred hhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCC
Q 045843 507 VANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNN 584 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~ 584 (913)
.+..+++++|.+..+|.. ..++.+.+|++.+|.+..+|.. |..++.||.|+++.|.+...|..|..|.+|-+|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 356678899999888866 5677899999999999999999 6999999999999999999999999999999999998
Q ss_pred ccCccccChhhhccccCCEEecCCCcC
Q 045843 585 CCQLMRLPAEVGDLHNLEILDLSHTGI 611 (913)
Q Consensus 585 c~~l~~lP~~i~~L~~L~~L~L~~~~~ 611 (913)
+...++|-.+-.-.++-..++.++.+
T Consensus 133 -na~~eid~dl~~s~~~al~~lgnepl 158 (177)
T KOG4579|consen 133 -NARAEIDVDLFYSSLPALIKLGNEPL 158 (177)
T ss_pred -CccccCcHHHhccccHHHHHhcCCcc
Confidence 77888887643333333344444433
No 187
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.98 E-value=0.053 Score=54.50 Aligned_cols=173 Identities=17% Similarity=0.206 Sum_probs=104.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC-CCCHHHHHHHHHHHccCCccCCCh----HHHHHHHH
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS-EGNIRDIQEVLLKRLDLRAEDHNI----DQRADMIS 253 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~----~~~~~~l~ 253 (913)
.+-.++.++|.-|.|||.+.+....... +. + ++-|.+.+ ......+...|...+... ..... +.....|.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~--~d-~-~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN--ED-Q-VAVVVIDKPTLSDATLLEAIVADLESQ-PKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC--CC-c-eEEEEecCcchhHHHHHHHHHHHhccC-ccchhHHHHHHHHHHHH
Confidence 3557999999999999999995544332 11 1 11134333 456778888888888762 22233 34444455
Q ss_pred HHH-ccCC-eEEEEeCCCCc--cccccccCC-----CCCCCceEEEEeec--------hhhhhc---CCceEEcccCChH
Q 045843 254 EEL-KDKS-YVLFLDEVSTE--INLRDIGIH-----DEHKNGKVVFACIF--------RNICGQ---IDEEVNVQRLSGK 313 (913)
Q Consensus 254 ~~l-~~kr-~LlVlDdv~~~--~~~~~~~~~-----~~~~~s~iivTTR~--------~~v~~~---~~~~~~l~~L~~~ 313 (913)
+.. +++| ..+++||.... +..+.+..- ....--+|+..-.. ...... ..-.|.+.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 444 4677 89999998763 222222110 11111223322211 111111 2233899999999
Q ss_pred HHHHHHHHHhCCCCC-CCCChHHHHHHHHHHhCCcHHHHHHHHH
Q 045843 314 DAQKLFWETVGVQLK-DCRDIKPVARLIINECGGMPHMIKLIGS 356 (913)
Q Consensus 314 ~~~~Lf~~~~~~~~~-~~~~~~~~~~~I~~~c~GlPlai~~~~~ 356 (913)
+...+++.+...... ..---.+....|..+..|.|.+|.-++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999888776622 2223456778899999999999987764
No 188
>PRK12377 putative replication protein; Provisional
Probab=96.98 E-value=0.0017 Score=66.84 Aligned_cols=98 Identities=21% Similarity=0.238 Sum_probs=56.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDK 259 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 259 (913)
+...+.++|.+|+|||+||..+++... .....++++++. ++...|-..... ....... .+.+ .+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~---~~~~~~~----l~~l-~~ 163 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDN---GQSGEKF----LQEL-CK 163 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhc---cchHHHH----HHHh-cC
Confidence 346899999999999999999999886 334445666553 444444433221 1111221 2222 46
Q ss_pred CeEEEEeCCCCc--cccccc-cCC--C--CCCCceEEEEee
Q 045843 260 SYVLFLDEVSTE--INLRDI-GIH--D--EHKNGKVVFACI 293 (913)
Q Consensus 260 r~LlVlDdv~~~--~~~~~~-~~~--~--~~~~s~iivTTR 293 (913)
--||||||+... ..|..- ... + -.+.-.+||||.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 679999999543 344321 111 1 122345677875
No 189
>PRK07261 topology modulation protein; Provisional
Probab=96.93 E-value=0.0034 Score=61.15 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=42.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhccc-CCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCe
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGES-RQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSY 261 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~ 261 (913)
.|.|+|++|+||||||+.+....... -+.|...|-.... ..+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~- 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQ--------------------ERDDDDMIADISNFLLKHD- 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccc--------------------cCCHHHHHHHHHHHHhCCC-
Confidence 58999999999999999998775432 2334444422111 1233455555666666666
Q ss_pred EEEEeCCCCc
Q 045843 262 VLFLDEVSTE 271 (913)
Q Consensus 262 LlVlDdv~~~ 271 (913)
.|+|+....
T Consensus 61 -wIidg~~~~ 69 (171)
T PRK07261 61 -WIIDGNYSW 69 (171)
T ss_pred -EEEcCcchh
Confidence 677887543
No 190
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.035 Score=62.58 Aligned_cols=87 Identities=18% Similarity=0.302 Sum_probs=46.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC--HHHHHHHHHHHccCCccC-CChHHHHHHHHHHHc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN--IRDIQEVLLKRLDLRAED-HNIDQRADMISEELK 257 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~ 257 (913)
-.+|+|+|++|+||||++..+......+.....+..++.. .+. ..+-++...+.++..... .+...+...+++ +.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 4799999999999999999888765422222334444432 222 222233333334333222 223333333332 33
Q ss_pred cCCeEEEEeCCCC
Q 045843 258 DKSYVLFLDEVST 270 (913)
Q Consensus 258 ~kr~LlVlDdv~~ 270 (913)
+.=+|++|..-.
T Consensus 428 -~~DLVLIDTaG~ 439 (559)
T PRK12727 428 -DYKLVLIDTAGM 439 (559)
T ss_pred -cCCEEEecCCCc
Confidence 355888888653
No 191
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.87 E-value=0.01 Score=59.81 Aligned_cols=51 Identities=18% Similarity=0.522 Sum_probs=40.9
Q ss_pred cCccccccchHHHHHHHHHH----HhcCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 156 AKKMEEVPSLNKHLKMLQEC----LRNVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~----L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.....+++|.+...+.|++- +.+.....+-++|..|+|||++++.+.+...
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 34455788999999888754 3455667888999999999999999998776
No 192
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.85 E-value=8e-05 Score=83.60 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=86.4
Q ss_pred hhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecC
Q 045843 504 EWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLN 583 (913)
Q Consensus 504 ~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~ 583 (913)
-.+.+++|.+++|.+........|++|++||+++|.+..+|.-.-.+++ |.+|.|++|.+++|.. |.+|.+|+.||++
T Consensus 185 ll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g-ie~LksL~~LDls 262 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG-IENLKSLYGLDLS 262 (1096)
T ss_pred HHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh-HHhhhhhhccchh
Confidence 3467889999999988777668899999999999988888764433444 9999999999999865 8999999999999
Q ss_pred CccCccccC--hhhhccccCCEEecCCCcCCc
Q 045843 584 NCCQLMRLP--AEVGDLHNLEILDLSHTGICC 613 (913)
Q Consensus 584 ~c~~l~~lP--~~i~~L~~L~~L~L~~~~~~~ 613 (913)
. +.+.... .-++.|..|+.|.|.||.+-.
T Consensus 263 y-Nll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 263 Y-NLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred H-hhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8 4444321 237889999999999997743
No 193
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.85 E-value=0.026 Score=61.50 Aligned_cols=191 Identities=10% Similarity=0.162 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHH-HHHHHHhcccCCCceEEEEEeCCC---CCHHHHHHHHHHHcc---
Q 045843 165 LNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIM-ENLHDAIGESRQFDFIFWVTVNSE---GNIRDIQEVLLKRLD--- 237 (913)
Q Consensus 165 r~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~i~~~i~~~l~--- 237 (913)
|.+.+++|..||.+..-..|.|.||-|+||+.|+ .++.++.+ .+..+.+.+- .+-..+++.++.++|
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999988899999999999999999 77765543 2555554432 223344555555542
Q ss_pred --------------------CCccC--CChHH-HHHHH---HHHHc--------------------------cCCeEEEE
Q 045843 238 --------------------LRAED--HNIDQ-RADMI---SEELK--------------------------DKSYVLFL 265 (913)
Q Consensus 238 --------------------~~~~~--~~~~~-~~~~l---~~~l~--------------------------~kr~LlVl 265 (913)
+...+ ++.+. +...| ...|+ .+|-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 22211 22222 21111 11111 12679999
Q ss_pred eCCCCccc-----cccc---cCC-CCCCCceEEEEeechhhhhc--------CCceEEcccCChHHHHHHHHHHhCCCCC
Q 045843 266 DEVSTEIN-----LRDI---GIH-DEHKNGKVVFACIFRNICGQ--------IDEEVNVQRLSGKDAQKLFWETVGVQLK 328 (913)
Q Consensus 266 Ddv~~~~~-----~~~~---~~~-~~~~~s~iivTTR~~~v~~~--------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 328 (913)
|+.-...+ |+.+ +.. ...+-.+||++|-+...... ..+.+.+...+.+.|.++...+......
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~ 234 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTE 234 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccc
Confidence 99865322 1221 111 34567889999988665443 4568899999999999999998865411
Q ss_pred C-------------C-----CChHHHHHHHHHHhCCcHHHHHHHHHHhhcC
Q 045843 329 D-------------C-----RDIKPVARLIINECGGMPHMIKLIGSSLANV 361 (913)
Q Consensus 329 ~-------------~-----~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~ 361 (913)
. . .....-....++..||==.-+..+++.++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 235 DSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred ccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 0 0 1233344567778888888888888888765
No 194
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.83 E-value=0.0083 Score=64.64 Aligned_cols=100 Identities=15% Similarity=0.256 Sum_probs=65.7
Q ss_pred HHHHHHHhc-CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCce-EEEEEeCCC-CCHHHHHHHHHHHccCCccCC-Ch
Q 045843 170 KMLQECLRN-VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDF-IFWVTVNSE-GNIRDIQEVLLKRLDLRAEDH-NI 245 (913)
Q Consensus 170 ~~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~~-~~ 245 (913)
.++++.+.. ..-..+.|+|..|+|||||++.+.+.... ++-+. .+|+.+.+. .++.++.+.+...+.....+. ..
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 446777642 22246799999999999999999887652 22233 467777764 578899999988776544221 11
Q ss_pred H-----HHHHHHHHHH--ccCCeEEEEeCCCC
Q 045843 246 D-----QRADMISEEL--KDKSYVLFLDEVST 270 (913)
Q Consensus 246 ~-----~~~~~l~~~l--~~kr~LlVlDdv~~ 270 (913)
. .......+.+ ++++.+||+|++..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 1222233333 48999999999875
No 195
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.054 Score=58.01 Aligned_cols=180 Identities=13% Similarity=0.132 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCce-----EEEEEeCCCCCHHHHHHHHHHHccCC
Q 045843 166 NKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDF-----IFWVTVNSEGNIRDIQEVLLKRLDLR 239 (913)
Q Consensus 166 ~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~-----~~wv~vs~~~~~~~i~~~i~~~l~~~ 239 (913)
+...+.+...+..++++ .+-+.|+.|+||+++|..+....--.....+ .-|+..+..+|+.-+... -+.-+..
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~~~~k 88 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCccccc
Confidence 44567777777776666 5889999999999999988876542211110 000000111110000000 0000000
Q ss_pred c-cCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEeec-hhhhhc---CCceE
Q 045843 240 A-EDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFACIF-RNICGQ---IDEEV 305 (913)
Q Consensus 240 ~-~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTTR~-~~v~~~---~~~~~ 305 (913)
. ..-.+++ +..+.+.+ .+++-++|+|++..... -..+. +..-..++.+|++|.+ ..+..- ....+
T Consensus 89 ~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i 167 (319)
T PRK08769 89 LRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRL 167 (319)
T ss_pred ccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEe
Confidence 0 0011222 22233322 25677999999987532 11111 1122346666666654 333322 56688
Q ss_pred EcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHH
Q 045843 306 NVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIG 355 (913)
Q Consensus 306 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 355 (913)
.+.+++.+++.+.+.+. +. .+..+..++..++|.|+.+..+.
T Consensus 168 ~~~~~~~~~~~~~L~~~-~~-------~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 168 EFKLPPAHEALAWLLAQ-GV-------SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred eCCCcCHHHHHHHHHHc-CC-------ChHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999998888653 11 12336678999999998665443
No 196
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.77 E-value=0.071 Score=60.70 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=89.4
Q ss_pred ccccccchHHHHHHHHHHH---h----c---CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHH
Q 045843 158 KMEEVPSLNKHLKMLQECL---R----N---VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRD 227 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L---~----~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 227 (913)
.+.++.|.+..++.+.+.. . . ...+-|-++|++|+|||.+|+.+.+... -.| +-+..+.
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~------ 294 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK------ 294 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH------
Confidence 3445668776666555422 1 1 2345789999999999999999998865 222 1111111
Q ss_pred HHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc----cc------ccc------CCCCCCCceEEEE
Q 045843 228 IQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN----LR------DIG------IHDEHKNGKVVFA 291 (913)
Q Consensus 228 i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~------~~~------~~~~~~~s~iivT 291 (913)
+.. ..-+.+...+.+.+...-...+.+|++|+++.... .. .+. +.....+--||.|
T Consensus 295 ----l~~----~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 ----LFG----GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ----hcc----cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 110 11111122222222222235789999999975311 00 000 0012233345556
Q ss_pred eechhhh-----hc--CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcH
Q 045843 292 CIFRNIC-----GQ--IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMP 348 (913)
Q Consensus 292 TR~~~v~-----~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (913)
|....-. .. .+..+.++.-+.++-.++|+.+......... -......+++.+.|.-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~-~~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW-KKYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc-cccCHHHHHhhcCCCC
Confidence 6544321 11 4567888888999999999887755311100 0112345566665553
No 197
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.72 E-value=0.019 Score=69.79 Aligned_cols=169 Identities=14% Similarity=0.256 Sum_probs=91.3
Q ss_pred ccccccchHHHHHHHHHHHhc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC
Q 045843 158 KMEEVPSLNKHLKMLQECLRN-------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN 224 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (913)
.+.++.|.+..+++|.+++.- ...+.+.++|++|+|||+||+.+++... ..| +.++..
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~-----i~i~~~-- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYF-----ISINGP-- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeE-----EEEecH--
Confidence 444678999999888877621 2235788999999999999999998764 222 222211
Q ss_pred HHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--------c-----ccc---cCCCCCCCceE
Q 045843 225 IRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--------L-----RDI---GIHDEHKNGKV 288 (913)
Q Consensus 225 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------~-----~~~---~~~~~~~~s~i 288 (913)
++ ... ..+.....+...+.......+.+|++||+..... . ..+ .......+..+
T Consensus 247 --~i----~~~----~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 --EI----MSK----YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred --HH----hcc----cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 100 0111112222233333345678999999865210 0 011 00012233444
Q ss_pred EE-Eeechh-hhhc------CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcH
Q 045843 289 VF-ACIFRN-ICGQ------IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMP 348 (913)
Q Consensus 289 iv-TTR~~~-v~~~------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (913)
|+ ||.... +... ....+.+...+.++-.+++........ -.. ......+++.+.|.-
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAE--DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Ccc--ccCHHHHHHhCCCCC
Confidence 54 444322 1111 245677888888888888876543221 000 112466777777764
No 198
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.69 E-value=0.068 Score=57.64 Aligned_cols=98 Identities=15% Similarity=0.283 Sum_probs=54.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCe
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSY 261 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~ 261 (913)
..+.++|..|+|||.||..+++... ..-..++++++.. +...+...-. . ...+... .+ +.+. +-=
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~~~------l~~~l~~~~~-~-~~~~~~~---~~-~~l~-~~D 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTADE------LIEILREIRF-N-NDKELEE---VY-DLLI-NCD 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEHHH------HHHHHHHHHh-c-cchhHHH---HH-HHhc-cCC
Confidence 7799999999999999999999875 2233566665433 3333322100 0 0111111 11 2222 335
Q ss_pred EEEEeCCCCc--ccccc-ccCC----CCCCCceEEEEeec
Q 045843 262 VLFLDEVSTE--INLRD-IGIH----DEHKNGKVVFACIF 294 (913)
Q Consensus 262 LlVlDdv~~~--~~~~~-~~~~----~~~~~s~iivTTR~ 294 (913)
||||||+... ..|.. ..+. --..+-.+||||..
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 8999999654 33332 1111 12335568888853
No 199
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.68 E-value=0.0028 Score=62.07 Aligned_cols=74 Identities=23% Similarity=0.434 Sum_probs=43.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKS 260 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 260 (913)
..-+.++|+.|+|||.||..+.+..-. +=..+.|+.+ .+++..+ .............. .+. +-
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~~------~~L~~~l----~~~~~~~~~~~~~~----~l~-~~ 109 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFITA------SDLLDEL----KQSRSDGSYEELLK----RLK-RV 109 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEH------HHHHHHH----HCCHCCTTHCHHHH----HHH-TS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEeec------Cceeccc----cccccccchhhhcC----ccc-cc
Confidence 357999999999999999999887652 2234566643 3444444 22222222223222 232 45
Q ss_pred eEEEEeCCCCc
Q 045843 261 YVLFLDEVSTE 271 (913)
Q Consensus 261 ~LlVlDdv~~~ 271 (913)
=||||||+-..
T Consensus 110 dlLilDDlG~~ 120 (178)
T PF01695_consen 110 DLLILDDLGYE 120 (178)
T ss_dssp SCEEEETCTSS
T ss_pred cEeccccccee
Confidence 68889999764
No 200
>PHA00729 NTP-binding motif containing protein
Probab=96.63 E-value=0.0093 Score=59.79 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 171 MLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 171 ~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.+++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555666789999999999999999999875
No 201
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.62 E-value=0.31 Score=60.05 Aligned_cols=45 Identities=24% Similarity=0.424 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHHHhc-------C--CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 161 EVPSLNKHLKMLQECLRN-------V--GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+++..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999888887732 1 12478899999999999999998765
No 202
>PRK06526 transposase; Provisional
Probab=96.62 E-value=0.0012 Score=68.59 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=42.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKS 260 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 260 (913)
...+.++|++|+|||+||..+.+.... ..+ .+.|+ +..++...+.... ..... ...+.+. .+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~-~g~-~v~f~------t~~~l~~~l~~~~----~~~~~---~~~l~~l--~~~ 160 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ-AGH-RVLFA------TAAQWVARLAAAH----HAGRL---QAELVKL--GRY 160 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH-CCC-chhhh------hHHHHHHHHHHHH----hcCcH---HHHHHHh--ccC
Confidence 356899999999999999999877642 222 23332 3344444443321 11111 1222222 245
Q ss_pred eEEEEeCCCCc
Q 045843 261 YVLFLDEVSTE 271 (913)
Q Consensus 261 ~LlVlDdv~~~ 271 (913)
-+||+||+...
T Consensus 161 dlLIIDD~g~~ 171 (254)
T PRK06526 161 PLLIVDEVGYI 171 (254)
T ss_pred CEEEEcccccC
Confidence 69999999753
No 203
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.061 Score=58.52 Aligned_cols=152 Identities=12% Similarity=0.076 Sum_probs=82.1
Q ss_pred ccc-hHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH----
Q 045843 162 VPS-LNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR---- 235 (913)
Q Consensus 162 ~~g-r~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~---- 235 (913)
++| .+..++.+.+.+..++++ ..-++|+.|+||||+|+.+.+..--....... .+... ..-+.+...
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~~~~hpD 79 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRIDSGNHPD 79 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHhcCCCCC
Confidence 456 677788888888776665 55899999999999999987765321111000 00000 000000000
Q ss_pred ---ccCCccCCChHHHHHHHHHH-----HccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEeechh-hhhc--
Q 045843 236 ---LDLRAEDHNIDQRADMISEE-----LKDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFACIFRN-ICGQ-- 300 (913)
Q Consensus 236 ---l~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTTR~~~-v~~~-- 300 (913)
+......-..++..+ +.+. ..+++-++|+|++..... ...+. +.....++.+|++|.+.. +..-
T Consensus 80 ~~~i~~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 80 VHLVAPDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred EEEeccccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 000000011222222 2222 235667899999876432 22221 113345666776665533 3222
Q ss_pred -CCceEEcccCChHHHHHHHHH
Q 045843 301 -IDEEVNVQRLSGKDAQKLFWE 321 (913)
Q Consensus 301 -~~~~~~l~~L~~~~~~~Lf~~ 321 (913)
....+.+.+++.++..+.+.+
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHH
Confidence 567899999999999888865
No 204
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.60 E-value=0.0053 Score=61.43 Aligned_cols=126 Identities=16% Similarity=0.220 Sum_probs=77.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE----------------------eCCCC---------------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT----------------------VNSEG--------------- 223 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~----------------------vs~~~--------------- 223 (913)
-..++|+|+.|+|||||...+..-.+.. ...+++. |.|.+
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lp 107 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP 107 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhH
Confidence 3589999999999999998886433210 1111111 11111
Q ss_pred ---------CHHHHHHHHHHHccCCc------c-C-CChHHHHHHHHHHHccCCeEEEEeCCCCccccc-------cccC
Q 045843 224 ---------NIRDIQEVLLKRLDLRA------E-D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLR-------DIGI 279 (913)
Q Consensus 224 ---------~~~~i~~~i~~~l~~~~------~-~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~-------~~~~ 279 (913)
...+....+++.++... + . +.-++..-.+.+.|-..+-+|+-|+-....|-+ .+.-
T Consensus 108 l~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~ 187 (226)
T COG1136 108 LLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRE 187 (226)
T ss_pred HHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHH
Confidence 11333455566655531 1 1 334455556778888899999999977643322 1111
Q ss_pred CCCCCCceEEEEeechhhhhcCCceEEccc
Q 045843 280 HDEHKNGKVVFACIFRNICGQIDEEVNVQR 309 (913)
Q Consensus 280 ~~~~~~s~iivTTR~~~v~~~~~~~~~l~~ 309 (913)
.....|..||+.|.+..+|..++.++.+..
T Consensus 188 ~~~~~g~tii~VTHd~~lA~~~dr~i~l~d 217 (226)
T COG1136 188 LNKERGKTIIMVTHDPELAKYADRVIELKD 217 (226)
T ss_pred HHHhcCCEEEEEcCCHHHHHhCCEEEEEeC
Confidence 145668899999999999998777776643
No 205
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.54 E-value=0.044 Score=66.77 Aligned_cols=167 Identities=17% Similarity=0.263 Sum_probs=92.5
Q ss_pred cccccchHHHHHHHHHHHh-------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCH
Q 045843 159 MEEVPSLNKHLKMLQECLR-------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNI 225 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (913)
..++.|.+..++.|.+.+. -...+-+.++|++|+|||++|+.+++... ..| +.++..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANF-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEehH---
Confidence 3456788888777766552 12344688999999999999999998865 333 222211
Q ss_pred HHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc--------cc--cc----cc--CC--CCCCCce
Q 045843 226 RDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI--------NL--RD----IG--IH--DEHKNGK 287 (913)
Q Consensus 226 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~--~~----~~--~~--~~~~~s~ 287 (913)
+ ++.. .-+.+...+.......-+..+.+|++|+++... .. +. +. .. ....+--
T Consensus 522 -~----l~~~----~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 -E----ILSK----WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred -H----Hhhc----ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1 1111 011112222222223334577999999986421 00 00 10 00 1223445
Q ss_pred EEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCC-CCCCChHHHHHHHHHHhCCcH
Q 045843 288 VVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQL-KDCRDIKPVARLIINECGGMP 348 (913)
Q Consensus 288 iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~I~~~c~GlP 348 (913)
||.||........ .+..+.++..+.++-.++|+....... ....++ ..+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 6666655443222 456888998899998999976654331 122233 45666676653
No 206
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.53 E-value=0.0042 Score=61.55 Aligned_cols=130 Identities=14% Similarity=0.146 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC--CCC----HHH-------HHH
Q 045843 164 SLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS--EGN----IRD-------IQE 230 (913)
Q Consensus 164 gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~----~~~-------i~~ 230 (913)
.+..+....++.|. ...++.+.|+.|.|||.||....-+.-..+.|+..+++.-.- ..+ +-+ ...
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 34445556666666 456999999999999999999887765568888888765221 111 011 111
Q ss_pred HHHHHccCCccCCChHHHHHHH------HHHHccC---CeEEEEeCCCCcc--ccccccCCCCCCCceEEEEeechh
Q 045843 231 VLLKRLDLRAEDHNIDQRADMI------SEELKDK---SYVLFLDEVSTEI--NLRDIGIHDEHKNGKVVFACIFRN 296 (913)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~l------~~~l~~k---r~LlVlDdv~~~~--~~~~~~~~~~~~~s~iivTTR~~~ 296 (913)
-+.+.+..-......+...+.= -.+++|+ .-+||+|++.+.. .+..+.- -.+.|||||++=-..+
T Consensus 82 p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT-R~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 82 PIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT-RIGEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT-TB-TT-EEEEEE----
T ss_pred HHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc-ccCCCcEEEEecCcee
Confidence 2222222111112222222100 1334453 4699999998854 4444422 3467999998875443
No 207
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.53 E-value=0.0067 Score=58.64 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=67.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC--CCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHcc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE--GNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKD 258 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 258 (913)
-.+++|+|+.|.|||||.+.++.... .....+++.-..- .+..+. ....++.-.+-+.-+...-.+...+-.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 35899999999999999999986542 3345555432111 111111 111121111112233344456666777
Q ss_pred CCeEEEEeCCCCcccccc---cc--C-CCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 259 KSYVLFLDEVSTEINLRD---IG--I-HDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 259 kr~LlVlDdv~~~~~~~~---~~--~-~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
++-++++|+.....|... +. + .....|..||++|.+...... .+..+.+
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 155 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVL 155 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 889999999887654321 10 0 112346778888888764433 4555544
No 208
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.52 E-value=0.025 Score=54.51 Aligned_cols=132 Identities=15% Similarity=0.168 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCC------------------ceEEEEEeCCC--
Q 045843 164 SLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQF------------------DFIFWVTVNSE-- 222 (913)
Q Consensus 164 gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F------------------~~~~wv~vs~~-- 222 (913)
|.+...+.+.+.+..+.++ .+-++|+.|+||+|+|..+.+..--.... .-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5567778888888777766 57999999999999999988765422221 12223322211
Q ss_pred -CCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc--ccccccCC--CCCCCceEEEEeechhh
Q 045843 223 -GNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI--NLRDIGIH--DEHKNGKVVFACIFRNI 297 (913)
Q Consensus 223 -~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~--~~~~~s~iivTTR~~~v 297 (913)
..++.+. .+.+.+.... ..+++-++|+||+.... .+..+.-. ....++.+|++|++..-
T Consensus 81 ~i~i~~ir-~i~~~~~~~~---------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP---------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred hhhHHHHH-HHHHHHHHHH---------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 2222222 2222222111 12467799999998742 23332111 34567888888887653
Q ss_pred -hhc---CCceEEcccCC
Q 045843 298 -CGQ---IDEEVNVQRLS 311 (913)
Q Consensus 298 -~~~---~~~~~~l~~L~ 311 (913)
..- ....+.+.++|
T Consensus 145 il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 145 ILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-HHHHTTSEEEEE----
T ss_pred ChHHHHhhceEEecCCCC
Confidence 222 44566666654
No 209
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.51 E-value=0.0048 Score=66.19 Aligned_cols=56 Identities=16% Similarity=0.373 Sum_probs=44.9
Q ss_pred cccchHHHHHHHHHHHhc------CCCcEEEEECCCCCcHHHHHHHHHHHhcc-----cCCCceEEE
Q 045843 161 EVPSLNKHLKMLQECLRN------VGTKRICIWGPPGVGKTTIMENLHDAIGE-----SRQFDFIFW 216 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~-----~~~F~~~~w 216 (913)
+++|.++.++++++++.. ...+++.++|++|+||||||+.+.+.... .+.|...-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 578999999999999842 34578999999999999999999988864 224555555
No 210
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.049 Score=59.84 Aligned_cols=139 Identities=14% Similarity=0.252 Sum_probs=84.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHH----HHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMI----SEE 255 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l----~~~ 255 (913)
.+.-+.+.|++|+|||+||..++.. ..|..+--+.-..- +| -++......+ ...
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~m-------------iG-----~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDM-------------IG-----LSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHc-------------cC-----ccHHHHHHHHHHHHHHh
Confidence 4557789999999999999999876 45654432221110 01 1112222223 333
Q ss_pred HccCCeEEEEeCCCCccccccccC-----------------CCCCCCceEEEEeechhhhhc------CCceEEcccCCh
Q 045843 256 LKDKSYVLFLDEVSTEINLRDIGI-----------------HDEHKNGKVVFACIFRNICGQ------IDEEVNVQRLSG 312 (913)
Q Consensus 256 l~~kr~LlVlDdv~~~~~~~~~~~-----------------~~~~~~s~iivTTR~~~v~~~------~~~~~~l~~L~~ 312 (913)
.+..=-.||+||+....+|-.++. |..++.--|+-||-...|... ....|.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 445667999999999888876641 122233335556666666554 456899999976
Q ss_pred -HHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHh
Q 045843 313 -KDAQKLFWETV-GVQLKDCRDIKPVARLIINEC 344 (913)
Q Consensus 313 -~~~~~Lf~~~~-~~~~~~~~~~~~~~~~I~~~c 344 (913)
++..+.+...- | .+.+.+.++.+.+.+|
T Consensus 675 ~~~~~~vl~~~n~f----sd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELNIF----SDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHccCC----CcchhHHHHHHHhccc
Confidence 77777776543 3 2345566667776666
No 211
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.48 E-value=0.0012 Score=78.26 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=80.5
Q ss_pred CCceeEEeeccC--ccccCchHHHhcCCcccEEeccCCccc--ccCccccCccCcceeecCCccCccccChhhhccccCC
Q 045843 527 CCRILTLLLQES--SLAELPASFFGYMCSLQLLDLHDTKIK--LLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLE 602 (913)
Q Consensus 527 ~~~Lr~L~l~~~--~l~~l~~~~f~~l~~Lr~LdLs~~~i~--~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~ 602 (913)
-.+|+.|+++|. -..+.+..+-.-+|.|+.|.+++-.+. .+-....+++||..||+++ ++++.+ .++++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHH
Confidence 467999999987 223355555567899999999997664 3445567899999999999 889998 7899999999
Q ss_pred EEecCCCcCCcCCCcc---ccccccccccccceeecccc
Q 045843 603 ILDLSHTGICCLPSEI---DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 603 ~L~L~~~~~~~lp~~i---~L~~L~~~~~~L~~L~l~~~ 638 (913)
+|.+.+-.+..-+.-+ .|+ +|+.|+++..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~-------~L~vLDIS~~ 230 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLK-------KLRVLDISRD 230 (699)
T ss_pred HHhccCCCCCchhhHHHHhccc-------CCCeeecccc
Confidence 9999887664433222 788 9999998876
No 212
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.47 E-value=0.026 Score=56.28 Aligned_cols=166 Identities=17% Similarity=0.270 Sum_probs=94.5
Q ss_pred cccccchHHHHHH---HHHHHhcC------CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHH
Q 045843 159 MEEVPSLNKHLKM---LQECLRNV------GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQ 229 (913)
Q Consensus 159 ~~~~~gr~~~~~~---l~~~L~~~------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 229 (913)
+.+++|.++...+ |++.|.++ ..+-|-.+|++|.|||.+|+.+.+...+ .| +.|.. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vka-------t 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVKA-------T 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEech-------H
Confidence 3467898877654 66777654 4678999999999999999999998762 22 22221 1
Q ss_pred HHHHHHccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCcc---ccccc-----------c----CCCCCCCceEEE
Q 045843 230 EVLLKRLDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTEI---NLRDI-----------G----IHDEHKNGKVVF 290 (913)
Q Consensus 230 ~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---~~~~~-----------~----~~~~~~~s~iiv 290 (913)
+-|-+.+| +....+..+.+.- +.-++.+.+|+++..- ..+.+ . -...+.|-..|-
T Consensus 186 ~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 186 ELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 11222221 1222233333332 3468999999987521 01111 0 013445656666
Q ss_pred Eeechhhhhc-----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCc
Q 045843 291 ACIFRNICGQ-----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 291 TTR~~~v~~~-----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 347 (913)
.|........ ...-++...=+++|-.+++...+..-. -.+..-.+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P---lpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP---LPVDADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC---CccccCHHHHHHHhCCC
Confidence 6665554333 344566666678888888888775431 11111245555666555
No 213
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.46 E-value=0.013 Score=60.73 Aligned_cols=88 Identities=18% Similarity=0.288 Sum_probs=58.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCC-ceEEEEEeCCCC-CHHHHHHHHHHHccCCc-------cCC-ChH-----
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQF-DFIFWVTVNSEG-NIRDIQEVLLKRLDLRA-------EDH-NID----- 246 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~-~~~----- 246 (913)
..++|+|..|+|||||++.+++... .+| +..+++-+.+.. ++.++.+.+.+.-.... .+. ...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~--~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIA--KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4789999999999999999999886 445 456677777754 45666666655321111 111 111
Q ss_pred HHHHHHHHHH--c-cCCeEEEEeCCCCc
Q 045843 247 QRADMISEEL--K-DKSYVLFLDEVSTE 271 (913)
Q Consensus 247 ~~~~~l~~~l--~-~kr~LlVlDdv~~~ 271 (913)
...-.+.+++ + ++..|+|+||+...
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1223455666 3 89999999998764
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.45 E-value=0.023 Score=58.37 Aligned_cols=90 Identities=16% Similarity=0.299 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCC
Q 045843 167 KHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHN 244 (913)
Q Consensus 167 ~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 244 (913)
..+..+.++..+ .+...+.++|.+|+|||+||..+++... ..-..+++++ +.++...+...... ...+
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~~--~~~~ 152 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFSN--SETS 152 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHhh--cccc
Confidence 344555555432 2345789999999999999999999876 3334455553 34555555443321 1112
Q ss_pred hHHHHHHHHHHHccCCeEEEEeCCCCc
Q 045843 245 IDQRADMISEELKDKSYVLFLDEVSTE 271 (913)
Q Consensus 245 ~~~~~~~l~~~l~~kr~LlVlDdv~~~ 271 (913)
.+. +.+.+. +.=+||+||+...
T Consensus 153 ~~~----~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 153 EEQ----LLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred HHH----HHHHhc-cCCEEEEeCCCCC
Confidence 222 223344 4558899999764
No 215
>PRK06921 hypothetical protein; Provisional
Probab=96.45 E-value=0.012 Score=61.66 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=29.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CceEEEEEe
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQ-FDFIFWVTV 219 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-F~~~~wv~v 219 (913)
....+.++|..|+|||+||..+++... ++ -..++++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456899999999999999999998875 33 344566664
No 216
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.44 E-value=0.011 Score=60.64 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=53.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH--------ccCCccCCCh---HHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR--------LDLRAEDHNI---DQRA 249 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~--------l~~~~~~~~~---~~~~ 249 (913)
-.++.|+|.+|+|||++|.+++.... ..-..++|+... .++.+.+.+ +... +-.. ...+. .+..
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i 97 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERFKQ-IAGEDFEELLSNIIIF-EPSSFEEQSEAI 97 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHHHH-HHhhChHhHhhCeEEE-eCCCHHHHHHHH
Confidence 45999999999999999999987664 344678899887 566555432 2222 1000 11222 2233
Q ss_pred HHHHHHHccCCeEEEEeCCC
Q 045843 250 DMISEELKDKSYVLFLDEVS 269 (913)
Q Consensus 250 ~~l~~~l~~kr~LlVlDdv~ 269 (913)
+.+.+.++.+.-++|+|.+.
T Consensus 98 ~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 98 RKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHhcccEEEEeCcH
Confidence 44444454677789999975
No 217
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.42 E-value=0.015 Score=59.59 Aligned_cols=129 Identities=19% Similarity=0.298 Sum_probs=77.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCC----------------C-ceEEEEE----------------eCCCC---
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQ----------------F-DFIFWVT----------------VNSEG--- 223 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----------------F-~~~~wv~----------------vs~~~--- 223 (913)
.-.+++|+|+.|+|||||.+.++.-...... + ...++|. .++.+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 3469999999999999999999874432110 0 0111111 11111
Q ss_pred -----CH--HHHHHHHHHHccCCc------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc-------ccCCCC
Q 045843 224 -----NI--RDIQEVLLKRLDLRA------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD-------IGIHDE 282 (913)
Q Consensus 224 -----~~--~~i~~~i~~~l~~~~------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~-------~~~~~~ 282 (913)
+. .++....++.++... .. +.-+...-.+...|.++.-+|+||+-.+..|... +..-..
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 11 123444455555432 11 3334444566788888999999999887655321 111145
Q ss_pred CCCceEEEEeechhhhhc-CCceEEcc
Q 045843 283 HKNGKVVFACIFRNICGQ-IDEEVNVQ 308 (913)
Q Consensus 283 ~~~s~iivTTR~~~v~~~-~~~~~~l~ 308 (913)
..|..||+++.+-+.|.. +++.+-|+
T Consensus 187 ~~~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 187 EKGLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred hcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 678889999999988777 66655554
No 218
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.42 E-value=0.02 Score=55.79 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=66.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc-c--cCC---Cc--eEEEEEeCCCCCHHHHHHHHHHHccCCcc--C------CC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG-E--SRQ---FD--FIFWVTVNSEGNIRDIQEVLLKRLDLRAE--D------HN 244 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~-~--~~~---F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~--~------~~ 244 (913)
-.+++|+|+.|+|||||.+.+..+.. + ... |. ...| +.+ .+.++.++.... . +.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--IDQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--EhH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 35899999999999999999864311 1 111 10 1222 222 345666664321 1 11
Q ss_pred hHHHHHHHHHHHccC--CeEEEEeCCCCccccccc---c--CC-CCCCCceEEEEeechhhhhcCCceEEc
Q 045843 245 IDQRADMISEELKDK--SYVLFLDEVSTEINLRDI---G--IH-DEHKNGKVVFACIFRNICGQIDEEVNV 307 (913)
Q Consensus 245 ~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~---~--~~-~~~~~s~iivTTR~~~v~~~~~~~~~l 307 (913)
-+...-.+...+-.+ +-++++|+.....+.... . +. ....|..||++|.+.......+..+.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEE
Confidence 223333455556567 789999998775443221 1 01 122577888888887665435555555
No 219
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.38 E-value=0.027 Score=53.82 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=71.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE---------------------eCCC-----------------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT---------------------VNSE----------------- 222 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---------------------vs~~----------------- 222 (913)
-..+.++|++|.||||+.+.+|...+... ..+|+. |-++
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 35889999999999999999998776422 122211 1111
Q ss_pred ----CCHHHHHH---HHHHHccCCcc-----C--CChHHHHHHHHHHHccCCeEEEEeCCCCc----cccccccCC--CC
Q 045843 223 ----GNIRDIQE---VLLKRLDLRAE-----D--HNIDQRADMISEELKDKSYVLFLDEVSTE----INLRDIGIH--DE 282 (913)
Q Consensus 223 ----~~~~~i~~---~i~~~l~~~~~-----~--~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----~~~~~~~~~--~~ 282 (913)
....++.+ +.++..+.... . +.-++..-.+...+-+++-+|+-|+-... ..|+-+.+- -+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 11223333 33333333321 1 33344455677777889999999986543 235433221 56
Q ss_pred CCCceEEEEeechhhhhc
Q 045843 283 HKNGKVVFACIFRNICGQ 300 (913)
Q Consensus 283 ~~~s~iivTTR~~~v~~~ 300 (913)
..|+.||++|.+..+...
T Consensus 185 r~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 185 RLGTTVLMATHDLELVNR 202 (223)
T ss_pred hcCcEEEEEeccHHHHHh
Confidence 789999999999987665
No 220
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.36 E-value=0.031 Score=54.65 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=72.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEe-------------------CCCCC-----------------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTV-------------------NSEGN----------------- 224 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v-------------------s~~~~----------------- 224 (913)
-.|++|+|++|+|||||.+.+..-... -.+.+||.- -+.|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 359999999999999999988644322 233444432 12221
Q ss_pred --------HHHHHHHHHHHccCCcc-----C--CChHHHHHHHHHHHccCCeEEEEeCCCCcccccccc------CCCCC
Q 045843 225 --------IRDIQEVLLKRLDLRAE-----D--HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDIG------IHDEH 283 (913)
Q Consensus 225 --------~~~i~~~i~~~l~~~~~-----~--~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~------~~~~~ 283 (913)
.++...++++.++.... . +.-++..-.+.+.|.=++-++.+|+..+..|=+.++ ..-..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 23333445555554331 1 333444455677787788999999999875533221 11234
Q ss_pred CCceEEEEeechhhhhc-CCceEEc
Q 045843 284 KNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 284 ~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
.|-..|+.|....-|.. ++.++-+
T Consensus 185 eGmTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 185 EGMTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred cCCeEEEEechhHHHHHhhheEEEe
Confidence 56666777777666655 4444433
No 221
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.35 E-value=0.031 Score=55.04 Aligned_cols=123 Identities=16% Similarity=0.294 Sum_probs=70.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE---eCCCCCHHHHHH------HHHHHccCCc------cC-CC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT---VNSEGNIRDIQE------VLLKRLDLRA------ED-HN 244 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~i~~------~i~~~l~~~~------~~-~~ 244 (913)
-.+++|+|+.|.|||||++.++.... .....+++. +. ..+...... ++++.++... .. +.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 35899999999999999999987543 234444443 22 112222222 1455554332 11 22
Q ss_pred hHHHHHHHHHHHccCCeEEEEeCCCCcccccc---cc--C-C-CCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 245 IDQRADMISEELKDKSYVLFLDEVSTEINLRD---IG--I-H-DEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 245 ~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~---~~--~-~-~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
-+...-.+...+-..+-++++|+.....+.+. +. + . ....+..||++|.+...... .+..+.+
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l 171 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILL 171 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 33334456667777889999999887544322 11 0 1 12226788888887665433 4444444
No 222
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.34 E-value=0.11 Score=60.33 Aligned_cols=49 Identities=29% Similarity=0.531 Sum_probs=40.6
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
..+.+++|.+..++.+...+.......+.|+|+.|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4455688999999999888766656677899999999999999998653
No 223
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.34 E-value=0.016 Score=58.80 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=54.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHc-c---CCc---cCCC---hHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRL-D---LRA---EDHN---IDQRAD 250 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l-~---~~~---~~~~---~~~~~~ 250 (913)
-.++-|+|++|+|||+++.++..... .+...++|+.... ++..++.+.. +.. . ... ...+ ......
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQIA-EDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHHHH-HhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 46899999999999999999887664 4457789999876 6666655433 221 0 000 0112 222344
Q ss_pred HHHHHHcc-CCeEEEEeCCCC
Q 045843 251 MISEELKD-KSYVLFLDEVST 270 (913)
Q Consensus 251 ~l~~~l~~-kr~LlVlDdv~~ 270 (913)
.+.+.+.. +.-+||+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHH
Confidence 55555543 456899998753
No 224
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.34 E-value=0.18 Score=54.17 Aligned_cols=169 Identities=8% Similarity=0.083 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCc---e-----EEEEEeCCCCCHHHHHHHHHHHcc
Q 045843 167 KHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFD---F-----IFWVTVNSEGNIRDIQEVLLKRLD 237 (913)
Q Consensus 167 ~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~---~-----~~wv~vs~~~~~~~i~~~i~~~l~ 237 (913)
...+.+.+.+..+.++ ..-+.|+.|+||+++|+.+....--..... | .-++..+..+|+..+ .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------E 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------c
Confidence 4456677777766654 566899999999999999887653211110 0 000001111111100 0
Q ss_pred CCc-cCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEeech-hhhhc---CCc
Q 045843 238 LRA-EDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFACIFR-NICGQ---IDE 303 (913)
Q Consensus 238 ~~~-~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTTR~~-~v~~~---~~~ 303 (913)
... ..-.+++.. .+.+.+ .+++-++|+|++..... ...+. +.....++.+|++|.+. .+..- ...
T Consensus 81 p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 81 PIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred cccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 000 001222222 222332 36777999999987532 22221 11233455666666543 44322 467
Q ss_pred eEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHH
Q 045843 304 EVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMI 351 (913)
Q Consensus 304 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 351 (913)
.+.+.+++.++..+.+.+..... ...+...++.++|.|..+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~-------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE-------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC-------hHHHHHHHHHcCCCHHHH
Confidence 89999999999998888764221 123566788999999643
No 225
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.33 E-value=0.003 Score=57.63 Aligned_cols=24 Identities=46% Similarity=0.857 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+|+|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998763
No 226
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.33 E-value=0.011 Score=63.23 Aligned_cols=113 Identities=13% Similarity=0.190 Sum_probs=66.3
Q ss_pred chHHHHHHHHHHHhc----CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCC
Q 045843 164 SLNKHLKMLQECLRN----VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLR 239 (913)
Q Consensus 164 gr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~ 239 (913)
++........+++.. ...+-+.++|..|+|||.||..+++... ..-..+.++++. ++...+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~~------~l~~~lk~~~~~- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHFP------EFIRELKNSISD- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEHH------HHHHHHHHHHhc-
Confidence 455555555566542 2446799999999999999999999886 222334566553 455555444321
Q ss_pred ccCCChHHHHHHHHHHHccCCeEEEEeCCCCc--ccccc--ccCC--C-C-CCCceEEEEee
Q 045843 240 AEDHNIDQRADMISEELKDKSYVLFLDEVSTE--INLRD--IGIH--D-E-HKNGKVVFACI 293 (913)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~--~~~~--~-~-~~~s~iivTTR 293 (913)
.+..+.. . .+ .+-=||||||+... .+|.. +..+ . . ..+-.+|+||.
T Consensus 206 ---~~~~~~l---~-~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 ---GSVKEKI---D-AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ---CcHHHHH---H-Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1222222 2 22 35679999999753 44643 2221 1 1 24566777774
No 227
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.00038 Score=69.61 Aligned_cols=107 Identities=22% Similarity=0.198 Sum_probs=75.0
Q ss_pred CCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccCh--hhhccccCCEE
Q 045843 527 CCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPA--EVGDLHNLEIL 604 (913)
Q Consensus 527 ~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~--~i~~L~~L~~L 604 (913)
+.+.+-|++.||.++.+. +..+|+.|+||.||-|.|++|.. +..+++|+.|.|+. +.|..+-. -+.+|++|++|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhH
Confidence 456677788888777654 36889999999999999998854 88999999999998 66666643 26788899999
Q ss_pred ecCCCcC-CcCCCccccccccccccccceeecccc
Q 045843 605 DLSHTGI-CCLPSEIDLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 605 ~L~~~~~-~~lp~~i~L~~L~~~~~~L~~L~l~~~ 638 (913)
-|..|.- ..-+.....+-| -.+|+|+.|+-...
T Consensus 94 WL~ENPCc~~ag~nYR~~VL-R~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVL-RVLPNLKKLDNVPV 127 (388)
T ss_pred hhccCCcccccchhHHHHHH-HHcccchhccCccc
Confidence 8888765 444443311000 01237777765443
No 228
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.30 E-value=0.012 Score=57.74 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=29.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEE
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWV 217 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 217 (913)
...+|.+.|+.|+||||+|+.++.... ..+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence 446999999999999999999998886 455555555
No 229
>PTZ00494 tuzin-like protein; Provisional
Probab=96.29 E-value=1.1 Score=48.87 Aligned_cols=154 Identities=11% Similarity=0.109 Sum_probs=100.3
Q ss_pred cccchHHHHHHHHHHHh---cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHcc
Q 045843 161 EVPSLNKHLKMLQECLR---NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLD 237 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 237 (913)
.++.|+.+-..+...|. ....+++.+.|.-|.||++|.+....+.. -..++|.|... ++-++.|.+.++
T Consensus 372 ~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLrsVVKALg 443 (664)
T PTZ00494 372 FEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLRSVVRALG 443 (664)
T ss_pred cccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHHHHHHHhC
Confidence 46788887777766664 34678999999999999999998887765 23567777664 456788999998
Q ss_pred CCccC---CChHHHHH---HHHHHHccCCeEEEEeCCCCccccccc-----cCCCCCCCceEEEEeechhhhhc-----C
Q 045843 238 LRAED---HNIDQRAD---MISEELKDKSYVLFLDEVSTEINLRDI-----GIHDEHKNGKVVFACIFRNICGQ-----I 301 (913)
Q Consensus 238 ~~~~~---~~~~~~~~---~l~~~l~~kr~LlVlDdv~~~~~~~~~-----~~~~~~~~s~iivTTR~~~v~~~-----~ 301 (913)
.+.-+ +-++-+.+ +-+....++.-+||+- +.+...+..+ .+.....-|+|++--=-+.+... .
T Consensus 444 V~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~LPR 522 (664)
T PTZ00494 444 VSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSSRR 522 (664)
T ss_pred CCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccCcc
Confidence 87633 33333333 3333345676677764 2233333222 22345566788865554443222 3
Q ss_pred CceEEcccCChHHHHHHHHHHh
Q 045843 302 DEEVNVQRLSGKDAQKLFWETV 323 (913)
Q Consensus 302 ~~~~~l~~L~~~~~~~Lf~~~~ 323 (913)
-..|.+++++.++|.+.-.+..
T Consensus 523 LDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 523 LDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ceeEecCCcCHHHHHHHHhccc
Confidence 4578999999999998887765
No 230
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.27 E-value=0.17 Score=53.19 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHH
Q 045843 166 NKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQ 229 (913)
Q Consensus 166 ~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 229 (913)
..-.+++..++..+ ..|-+.|++|+|||++|+.+.+... . ..+.++++...+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg--~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD--R---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC--C---CEEEEeCCccCCHHHHh
Confidence 34445555555443 3566899999999999999987442 2 23456666665555554
No 231
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.25 E-value=0.036 Score=57.68 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=95.8
Q ss_pred ccccchHHHHHHHHHHHhc----CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-ceEEEEEeCCCCCHHH-HHHHHH
Q 045843 160 EEVPSLNKHLKMLQECLRN----VGTKRICIWGPPGVGKTTIMENLHDAIGESRQF-DFIFWVTVNSEGNIRD-IQEVLL 233 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~-i~~~i~ 233 (913)
..++|-.++..++-.++.. ++-.-+.|+|+.|.|||+|...+..+. +.| +..+-|......-.++ .++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3467888888888888742 345578899999999999998888772 233 4445555555443332 366666
Q ss_pred HHccCCcc-----CCChHHHHHHHHHHHcc------CCeEEEEeCCCCcccc---------ccccCCCCCCCceEEEEee
Q 045843 234 KRLDLRAE-----DHNIDQRADMISEELKD------KSYVLFLDEVSTEINL---------RDIGIHDEHKNGKVVFACI 293 (913)
Q Consensus 234 ~~l~~~~~-----~~~~~~~~~~l~~~l~~------kr~LlVlDdv~~~~~~---------~~~~~~~~~~~s~iivTTR 293 (913)
.++..... ..+..+...++.+.|+. -++..|+|+.+---.. -++.-....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 66543221 13445555666666642 2477778777653211 1111113456677889999
Q ss_pred chhhhh-------c-CCc-eEEcccCChHHHHHHHHHHh
Q 045843 294 FRNICG-------Q-IDE-EVNVQRLSGKDAQKLFWETV 323 (913)
Q Consensus 294 ~~~v~~-------~-~~~-~~~l~~L~~~~~~~Lf~~~~ 323 (913)
-.-... . ... ++-++.++-++-..++++..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 643322 1 233 44456666677777766655
No 232
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.24 E-value=0.22 Score=54.41 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEECCCCCcHHHHHHHHHHHhccc
Q 045843 166 NKHLKMLQECLRN---VGTKRICIWGPPGVGKTTIMENLHDAIGES 208 (913)
Q Consensus 166 ~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 208 (913)
+.-.+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+..+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445666666654 456799999999999999999999888743
No 233
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.24 E-value=0.028 Score=69.31 Aligned_cols=104 Identities=16% Similarity=0.293 Sum_probs=59.8
Q ss_pred cccchHHHHHHHHHHHhcC---------CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLRNV---------GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
.++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+..... ..-...+.+.++...+...+
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~~d~s~~~~~~~~--- 640 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF--DDEDAMVRIDMSEYMEKHSV--- 640 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhhcccchH---
Confidence 4689999999999888431 134688999999999999999997653 22233444555543221111
Q ss_pred HHHHccCCccCCChHHHHHHHHHHHccCC-eEEEEeCCCCc
Q 045843 232 LLKRLDLRAEDHNIDQRADMISEELKDKS-YVLFLDEVSTE 271 (913)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~ 271 (913)
..-++....-...++ ...+.+.++.++ .+|+||++...
T Consensus 641 -~~l~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 641 -ARLIGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred -HHhcCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccC
Confidence 111221111001000 123444444344 48999999864
No 234
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.22 E-value=0.028 Score=54.81 Aligned_cols=109 Identities=16% Similarity=0.025 Sum_probs=62.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE------eCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT------VNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMIS 253 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~ 253 (913)
.-.+++|+|+.|.|||||++.+..-... ....+++. +.+... -+.-+...-.+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~q~~~-----------------LSgGq~qrv~la 83 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP---NGDNDEWDGITPVYKPQYID-----------------LSGGELQRVAIA 83 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC---CCcEEEECCEEEEEEcccCC-----------------CCHHHHHHHHHH
Confidence 3459999999999999999999865432 22333321 112111 112233344556
Q ss_pred HHHccCCeEEEEeCCCCcccccc---c---cCC-CCCCCceEEEEeechhhhhc-CCceEEcc
Q 045843 254 EELKDKSYVLFLDEVSTEINLRD---I---GIH-DEHKNGKVVFACIFRNICGQ-IDEEVNVQ 308 (913)
Q Consensus 254 ~~l~~kr~LlVlDdv~~~~~~~~---~---~~~-~~~~~s~iivTTR~~~v~~~-~~~~~~l~ 308 (913)
..+-.++-++++|+.....+... + ... ....+..||++|.+...... ++..+.+.
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 146 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEc
Confidence 66677889999999877544221 1 001 12223667778877665443 55555554
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.028 Score=58.37 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=47.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDK 259 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 259 (913)
+..-+.++|.+|+|||.||.++.++.- +..+ .+.++++ .++..++...... ......|.+.+ .+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~-------~~~~~~l~~~l-~~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDE-------GRLEEKLLREL-KK 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhc-------CchHHHHHHHh-hc
Confidence 667899999999999999999999987 3333 3455543 4455555444332 11122222222 24
Q ss_pred CeEEEEeCCCC
Q 045843 260 SYVLFLDEVST 270 (913)
Q Consensus 260 r~LlVlDdv~~ 270 (913)
-=||||||+-.
T Consensus 168 ~dlLIiDDlG~ 178 (254)
T COG1484 168 VDLLIIDDIGY 178 (254)
T ss_pred CCEEEEecccC
Confidence 45999999876
No 236
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.21 E-value=0.02 Score=58.33 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=75.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC-----CCCHHHHHHHHHHHccCCcc------C--CChH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS-----EGNIRDIQEVLLKRLDLRAE------D--HNID 246 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~i~~~i~~~l~~~~~------~--~~~~ 246 (913)
+-.++++||..|+||||+++.+..-.. .-.+.+++.-.+ .....+-..++++.++...+ . +.-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 446899999999999999999986553 223344443221 12233445666677665431 1 2223
Q ss_pred HHHHHHHHHHccCCeEEEEeCCCCccccc---cc----cCCCCCCCceEEEEeechhhhhc
Q 045843 247 QRADMISEELKDKSYVLFLDEVSTEINLR---DI----GIHDEHKNGKVVFACIFRNICGQ 300 (913)
Q Consensus 247 ~~~~~l~~~l~~kr~LlVlDdv~~~~~~~---~~----~~~~~~~~s~iivTTR~~~v~~~ 300 (913)
...-.+.+.|.-++-++|.|+.-+..+.. .+ .--....|-..++.|.+-.|+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhh
Confidence 33445678888999999999987764431 11 00145567888999999888877
No 237
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.12 Score=58.63 Aligned_cols=156 Identities=18% Similarity=0.300 Sum_probs=83.9
Q ss_pred CccccccchHHHHHHHHHHHh-------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-
Q 045843 157 KKMEEVPSLNKHLKMLQECLR-------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE- 222 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~- 222 (913)
....++=|.++-+.++-+.+. -...+-|-.+|++|+|||++|+.+.+... .+| +.|...
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~--~nF-----lsvkgpE 503 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG--MNF-----LSVKGPE 503 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc--CCe-----eeccCHH
Confidence 333344456666666654441 13567889999999999999999999876 455 222221
Q ss_pred ------CCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc---------cccc----cCC-C-
Q 045843 223 ------GNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN---------LRDI----GIH-D- 281 (913)
Q Consensus 223 ------~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---------~~~~----~~~-~- 281 (913)
-+-++.++++.++ .=+--+.+|.||+++.... -+.+ .-. +
T Consensus 504 L~sk~vGeSEr~ir~iF~k-------------------AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG 564 (693)
T KOG0730|consen 504 LFSKYVGESERAIREVFRK-------------------ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDG 564 (693)
T ss_pred HHHHhcCchHHHHHHHHHH-------------------HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccc
Confidence 0112222222222 2223467888888765211 0010 000 1
Q ss_pred --CCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHH
Q 045843 282 --EHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVAR 338 (913)
Q Consensus 282 --~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~ 338 (913)
..++--||-.|.-.+.-.. .+..+.++.=+.+.-.++|+.++..- ..+.-++++++.
T Consensus 565 ~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 565 LEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred ccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 1222233333333222211 45677777777777889999988665 223345665554
No 238
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.17 E-value=0.03 Score=54.31 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=66.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEE-------EeCCCCCH--HHHHHHHHHHccCCccC-CChHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWV-------TVNSEGNI--RDIQEVLLKRLDLRAED-HNIDQRAD 250 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~~~--~~i~~~i~~~l~~~~~~-~~~~~~~~ 250 (913)
-.+++|+|+.|.|||||++.+....... ...+++ .+.+.+.. ..+.+.+.-. .... +.-+...-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 3589999999999999999998764321 121111 12333211 1233332210 1111 33344444
Q ss_pred HHHHHHccCCeEEEEeCCCCccccccc---cCCCCCCCceEEEEeechhhhhcCCceEEc
Q 045843 251 MISEELKDKSYVLFLDEVSTEINLRDI---GIHDEHKNGKVVFACIFRNICGQIDEEVNV 307 (913)
Q Consensus 251 ~l~~~l~~kr~LlVlDdv~~~~~~~~~---~~~~~~~~s~iivTTR~~~v~~~~~~~~~l 307 (913)
.+...+-.++-++++|+.....|.+.. ...-...+..||++|.+.......++.+.+
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~i~~l 160 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDL 160 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCEEEEE
Confidence 566677778889999998876543221 000001146688888776654335555544
No 239
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.17 E-value=0.0076 Score=57.95 Aligned_cols=102 Identities=21% Similarity=0.218 Sum_probs=77.0
Q ss_pred CCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcccc-CccCcceeecCCccCccccCh--hhhccccCCE
Q 045843 527 CCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSIS-SLTNLKALFLNNCCQLMRLPA--EVGDLHNLEI 603 (913)
Q Consensus 527 ~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~-~L~~L~~L~L~~c~~l~~lP~--~i~~L~~L~~ 603 (913)
..+...+++++|.+..++. |..++.|..|.|++|.|+.+-+.+. -+++|+.|.|.+ +++.++-. .+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccce
Confidence 3466788999998777665 6889999999999999998866666 456799999999 67776632 3677889999
Q ss_pred EecCCCcCCcCCCc---c--ccccccccccccceeecccc
Q 045843 604 LDLSHTGICCLPSE---I--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 604 L~L~~~~~~~lp~~---i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
|.+-+|.+..-+.- + +++ +|+.|+....
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp-------~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLP-------SLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecC-------cceEeehhhh
Confidence 99998877443321 1 555 8888876655
No 240
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.15 E-value=0.02 Score=59.33 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=55.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCC----CceEEEEEeCCCCCHHHHHHHHHHHccCCcc----------CCCh-
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQ----FDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----------DHNI- 245 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~- 245 (913)
-.++.|+|.+|+|||++|.+++........ ...++|++....++..++.+ +++..+.... ..+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCHH
Confidence 468999999999999999999755432222 36789999888777655543 3333322110 0122
Q ss_pred --HHHHHHHHHHHc-c-CCeEEEEeCCCC
Q 045843 246 --DQRADMISEELK-D-KSYVLFLDEVST 270 (913)
Q Consensus 246 --~~~~~~l~~~l~-~-kr~LlVlDdv~~ 270 (913)
......+.+.+. . +.-+||+|-+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 223344444443 3 677999999864
No 241
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.029 Score=56.00 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=69.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcc-------------cC-----CCce--EEEEEe----CCCCCHHHH--------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGE-------------SR-----QFDF--IFWVTV----NSEGNIRDI-------- 228 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~-------------~~-----~F~~--~~wv~v----s~~~~~~~i-------- 228 (913)
-.+++|+|..|+|||||++.+.--.+- .. .|.. .+|=+- ....++.++
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 358999999999999999998743321 00 1211 122111 111122222
Q ss_pred --------HHHHHHHccCCcc------C--CChHHHHHHHHHHHccCCeEEEEeCCCCccc-------cccccCCCCCCC
Q 045843 229 --------QEVLLKRLDLRAE------D--HNIDQRADMISEELKDKSYVLFLDEVSTEIN-------LRDIGIHDEHKN 285 (913)
Q Consensus 229 --------~~~i~~~l~~~~~------~--~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~~~~~~~~~~~~ 285 (913)
..+++++++.... . +.-+...-.+.+.|.-++-+||+|+.-+..| |+-+.-.....+
T Consensus 113 ~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~ 192 (252)
T COG1124 113 GLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERG 192 (252)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC
Confidence 2344555554431 1 2223333456777888899999999887543 332222245667
Q ss_pred ceEEEEeechhhhhc
Q 045843 286 GKVVFACIFRNICGQ 300 (913)
Q Consensus 286 s~iivTTR~~~v~~~ 300 (913)
-.+|+.|.+-.++..
T Consensus 193 lt~l~IsHdl~~v~~ 207 (252)
T COG1124 193 LTYLFISHDLALVEH 207 (252)
T ss_pred ceEEEEeCcHHHHHH
Confidence 788999998877665
No 242
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.047 Score=61.12 Aligned_cols=147 Identities=18% Similarity=0.311 Sum_probs=86.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDK 259 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 259 (913)
...-|-++|++|+|||-||++|+|... -+| +.|-.. +++..- +| +++.......++.=..-
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag--~NF-----isVKGP----ELlNkY---VG-----ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAG--ANF-----ISVKGP----ELLNKY---VG-----ESERAVRQVFQRARASA 604 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhcc--Cce-----EeecCH----HHHHHH---hh-----hHHHHHHHHHHHhhcCC
Confidence 345788999999999999999999987 444 333322 111111 11 11111112222222357
Q ss_pred CeEEEEeCCCCc-------cccc------cccCC----CCCCCceEEEEeechhhhhc-------CCceEEcccCChHHH
Q 045843 260 SYVLFLDEVSTE-------INLR------DIGIH----DEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDA 315 (913)
Q Consensus 260 r~LlVlDdv~~~-------~~~~------~~~~~----~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~ 315 (913)
+++|.||+++.. ..|. .+... ....|--||-.|...++... -+....++.=+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 899999999762 1121 11111 23455667777766665433 456788888888999
Q ss_pred HHHHHHHhCCC---CCCCCChHHHHHHHHHHhCCc
Q 045843 316 QKLFWETVGVQ---LKDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 316 ~~Lf~~~~~~~---~~~~~~~~~~~~~I~~~c~Gl 347 (913)
.++++...... ...+.+++++++. .+|.|.
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 99998887632 3344567766654 255554
No 243
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.028 Score=54.99 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=65.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccC--Cc----c---------CCCh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDL--RA----E---------DHNI 245 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~--~~----~---------~~~~ 245 (913)
-.+++|+|+.|.|||||++.++.... .....+++.-....+.. ..+...++. +. . -+.-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 35899999999999999999987542 22344443211100000 011111110 00 0 0111
Q ss_pred HHHHHHHHHHHccCCeEEEEeCCCCcccccccc-----C-CCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 246 DQRADMISEELKDKSYVLFLDEVSTEINLRDIG-----I-HDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 246 ~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~-----~-~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
+...-.+...+-.++-++++|+.....|..... + .....|..||++|.+...... .+..+.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l 168 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 223334666777889999999988765533210 0 112236788888888775554 5555544
No 244
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.11 E-value=0.035 Score=57.06 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=56.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCC------ceEEEEEeCCCCCHHHHHHHHHHHccCCc----------cCCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQF------DFIFWVTVNSEGNIRDIQEVLLKRLDLRA----------EDHN 244 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~i~~~i~~~l~~~~----------~~~~ 244 (913)
-.++.|+|++|+|||++|.++..... ..- ..++|+.....++...+.+ +.+..+... ...+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCCC
Confidence 46999999999999999999876653 222 5678999887777665543 333322110 1134
Q ss_pred hHHHHHHHHHHHc----cCCeEEEEeCCCC
Q 045843 245 IDQRADMISEELK----DKSYVLFLDEVST 270 (913)
Q Consensus 245 ~~~~~~~l~~~l~----~kr~LlVlDdv~~ 270 (913)
.++....+.+..+ .+.-+||+|.+..
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 4555555555443 3556999999864
No 245
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.22 Score=58.91 Aligned_cols=104 Identities=17% Similarity=0.330 Sum_probs=65.7
Q ss_pred cccchHHHHHHHHHHHh-------c--CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLR-------N--VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~-------~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
.++|.++.++.+.+.+. + ..+.+...+|+.|+|||-||+.+....- +.=+..+-+..|+......
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf--g~e~aliR~DMSEy~EkHs---- 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF--GDEQALIRIDMSEYMEKHS---- 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc--CCCccceeechHHHHHHHH----
Confidence 35799999999998883 2 2345777899999999999999987652 1114455555665433222
Q ss_pred HHHHccCCccCCChHHHHHHHHHHHccCCe-EEEEeCCCCc
Q 045843 232 LLKRLDLRAEDHNIDQRADMISEELKDKSY-VLFLDEVSTE 271 (913)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~ 271 (913)
+-+-+|-...--..++ -..|-+.++.++| +|.||+|...
T Consensus 566 VSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 566 VSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhc
Confidence 2222232221111122 3356677788888 8889999864
No 246
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.10 E-value=0.0095 Score=59.64 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=61.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHH---HHHHHccCCccCCChHHHHHHHHHHHcc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQE---VLLKRLDLRAEDHNIDQRADMISEELKD 258 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~---~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 258 (913)
..|.|+|+.|+||||+++.+..... .+....+++--. +.. .... .+..+-. -+.+.......++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~--~~~~~~i~t~e~-~~E--~~~~~~~~~i~q~~---vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN--KNKTHHILTIED-PIE--FVHESKRSLINQRE---VGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh--hcCCcEEEEEcC-Ccc--ccccCccceeeecc---cCCCccCHHHHHHHHhcC
Confidence 4789999999999999998876654 333334443222 111 1000 1111100 011223455667777877
Q ss_pred CCeEEEEeCCCCccccccccCCCCCCCceEEEEeechhhh
Q 045843 259 KSYVLFLDEVSTEINLRDIGIHDEHKNGKVVFACIFRNIC 298 (913)
Q Consensus 259 kr~LlVlDdv~~~~~~~~~~~~~~~~~s~iivTTR~~~v~ 298 (913)
.+=.|++|++.+.+....... ....|-.++.|+...++.
T Consensus 74 ~pd~ii~gEird~e~~~~~l~-~a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALT-AAETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHH-HHHcCCEEEEEecCCcHH
Confidence 788999999987655443211 123455677777655543
No 247
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.10 E-value=0.02 Score=61.10 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=25.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.....++|+|++|+|||.+|+.+++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999999987
No 248
>PRK04296 thymidine kinase; Provisional
Probab=96.09 E-value=0.0074 Score=59.96 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=63.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccC---CChHHHHHHHHHHHcc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAED---HNIDQRADMISEELKD 258 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 258 (913)
.++.|.|+.|.||||+|.....+.. .+-..++.+. ..++...-...++++++..... ...++....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4678999999999999999888775 2333333332 2222222234456666543322 233444445544 334
Q ss_pred CCeEEEEeCCCCcc-c-cccccCCCCCCCceEEEEeechh
Q 045843 259 KSYVLFLDEVSTEI-N-LRDIGIHDEHKNGKVVFACIFRN 296 (913)
Q Consensus 259 kr~LlVlDdv~~~~-~-~~~~~~~~~~~~s~iivTTR~~~ 296 (913)
+.-+||+|++.-.. + ...+.-.....|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 55699999996431 1 11111112456889999998854
No 249
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.08 E-value=0.18 Score=51.11 Aligned_cols=222 Identities=12% Similarity=0.112 Sum_probs=122.8
Q ss_pred cccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhc---c-cCCCceEEEEEeCCC----------C---
Q 045843 161 EVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIG---E-SRQFDFIFWVTVNSE----------G--- 223 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~---~-~~~F~~~~wv~vs~~----------~--- 223 (913)
.+.++++....+.......+.+..-++|+.|.||-|.+..+.+..- + +-.-+.+.|.+-|.. .
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 3557788888888777777789999999999999998877665442 1 112233444443322 1
Q ss_pred --------CHHHHHHHHHHHccCCccCCChHHHHHHHHHHHc-cCCe-EEEEeCCCCc--cccccccCC--CCCCCceEE
Q 045843 224 --------NIRDIQEVLLKRLDLRAEDHNIDQRADMISEELK-DKSY-VLFLDEVSTE--INLRDIGIH--DEHKNGKVV 289 (913)
Q Consensus 224 --------~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~kr~-LlVlDdv~~~--~~~~~~~~~--~~~~~s~ii 289 (913)
.-+-+.++|++++....+- ..+ .+.| ++|+-.+++- +....+.-- .-.+.+|+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qi------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQI------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcch------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 1123344444444322111 011 2333 5566665542 111111100 223455666
Q ss_pred EEeech----hhhhcCCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcC----
Q 045843 290 FACIFR----NICGQIDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLANV---- 361 (913)
Q Consensus 290 vTTR~~----~v~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~---- 361 (913)
+...+. ..-.+..-.+++..-+++|-...+.+.+..+.-.- .++++..|+++++|.---+..+-.+++-+
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~ 239 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--PKELLKRIAEKSNRNLRRALLMLEAVRVNNEPF 239 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--cHHHHHHHHHHhcccHHHHHHHHHHHHhccccc
Confidence 543322 11111455788999999999999988886652223 37899999999998764444444433321
Q ss_pred ------CChHHHHHHHHhhcCCCCCCCCchHHHHHHHHHhcc
Q 045843 362 ------SNPAIWRDMLSQLRSPSMAPKQELEEVYKSFKLVCD 397 (913)
Q Consensus 362 ------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~ 397 (913)
...-+|+.++.++.. .....++.+.+..+=..=|+
T Consensus 240 ~a~~~~i~~~dWe~~i~e~a~-~i~~eQs~~~L~~vR~~LYe 280 (351)
T KOG2035|consen 240 TANSQVIPKPDWEIYIQEIAR-VILKEQSPAKLLEVRGRLYE 280 (351)
T ss_pred cccCCCCCCccHHHHHHHHHH-HHHhccCHHHHHHHHHHHHH
Confidence 234589988877644 32222333444444443444
No 250
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.08 E-value=0.025 Score=53.39 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=61.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKS 260 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr 260 (913)
-.+++|+|..|.|||||++.+..... .....+++.-.. .++.-.+-+.-+...-.+...+-.++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEccCCHHHHHHHHHHHHHhcCC
Confidence 35899999999999999999986543 223444432100 00000001122233334566666788
Q ss_pred eEEEEeCCCCcccccc---ccCC-CCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 261 YVLFLDEVSTEINLRD---IGIH-DEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 261 ~LlVlDdv~~~~~~~~---~~~~-~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
-++++|+.-...|... +... ... +..||++|.+...... .+.++.+
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~-~~til~~th~~~~~~~~~d~v~~l 140 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY-PGTVILVSHDRYFLDQVATKIIEL 140 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCEEEEE
Confidence 8999999877544221 1100 111 3468888877665543 4555444
No 251
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.08 E-value=0.029 Score=55.84 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=51.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-CCHHHHHHHHHHHccCCccC----CChHHHHH-HHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE-GNIRDIQEVLLKRLDLRAED----HNIDQRAD-MISE 254 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~----~~~~~~~~-~l~~ 254 (913)
++||.++|+.|+||||.+..++.....+ -..+..++.... ....+-++..++.++..... .+..+... .+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999888888777633 334555554322 23556677788888765422 22223332 3333
Q ss_pred HHccCCeEEEEeCCC
Q 045843 255 ELKDKSYVLFLDEVS 269 (913)
Q Consensus 255 ~l~~kr~LlVlDdv~ 269 (913)
.-..+.=+|++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322334577788764
No 252
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.13 Score=50.95 Aligned_cols=175 Identities=19% Similarity=0.310 Sum_probs=97.8
Q ss_pred cccccc-hHHHHHHHHHHH-------------hcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC
Q 045843 159 MEEVPS-LNKHLKMLQECL-------------RNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN 224 (913)
Q Consensus 159 ~~~~~g-r~~~~~~l~~~L-------------~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (913)
..+++| -+..+.+|.+.+ .-.+.+-+.++|++|.|||-||+.|+++.. ..|+.||..
T Consensus 145 tYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgs-- 215 (404)
T KOG0728|consen 145 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGS-- 215 (404)
T ss_pred HHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechH--
Confidence 334555 466666665554 223567889999999999999999997764 556777764
Q ss_pred HHHHHHHHHHHccCCccCCChHHHHHHHHHHH----ccCCeEEEEeCCCCcc----------c-------cc---cc-cC
Q 045843 225 IRDIQEVLLKRLDLRAEDHNIDQRADMISEEL----KDKSYVLFLDEVSTEI----------N-------LR---DI-GI 279 (913)
Q Consensus 225 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~----------~-------~~---~~-~~ 279 (913)
+-+++-| + +....+++.+ ..-+-.|..|++++.- + ++ .+ ++
T Consensus 216 -elvqk~i----g---------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf 281 (404)
T KOG0728|consen 216 -ELVQKYI----G---------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF 281 (404)
T ss_pred -HHHHHHh----h---------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc
Confidence 1122222 1 1112222222 2356788888887631 0 01 11 11
Q ss_pred CCCCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCcHHHH
Q 045843 280 HDEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGMPHMI 351 (913)
Q Consensus 280 ~~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~GlPlai 351 (913)
...+.-+||.+|..-++... .+..++..+=+++.-.++++-+.-.- ...-.+++.++.++.--.|.--.++
T Consensus 282 -eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~v 360 (404)
T KOG0728|consen 282 -EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGV 360 (404)
T ss_pred -ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhh
Confidence 34566788888877666443 45677777777766666666554332 1123355555555433222223444
Q ss_pred HHHHHH
Q 045843 352 KLIGSS 357 (913)
Q Consensus 352 ~~~~~~ 357 (913)
.+=|+.
T Consensus 361 cteagm 366 (404)
T KOG0728|consen 361 CTEAGM 366 (404)
T ss_pred hhhhhH
Confidence 444443
No 253
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.07 E-value=0.034 Score=54.68 Aligned_cols=121 Identities=13% Similarity=0.183 Sum_probs=64.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCC---------------ccC-CC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLR---------------AED-HN 244 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~---------------~~~-~~ 244 (913)
-.+++|+|+.|.|||||++.+...... -...+++.-. ++......+...++.- ... +.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 358999999999999999999865432 1223332111 1111111111111100 001 11
Q ss_pred hHHHHHHHHHHHccCCeEEEEeCCCCccccccc---c--CCCCCCCceEEEEeechhhhhcCCceEEc
Q 045843 245 IDQRADMISEELKDKSYVLFLDEVSTEINLRDI---G--IHDEHKNGKVVFACIFRNICGQIDEEVNV 307 (913)
Q Consensus 245 ~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~---~--~~~~~~~s~iivTTR~~~v~~~~~~~~~l 307 (913)
-+...-.+...+-.++-++++|+.....+.... . +.....+..||++|.+.......+..+.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l 169 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 233334456666678899999999876543211 0 00112367788888877654334444443
No 254
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.04 E-value=0.26 Score=55.36 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=46.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCH--HHHHHHHHHHccCCccC-CChHHHHHHHHHHHc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNI--RDIQEVLLKRLDLRAED-HNIDQRADMISEELK 257 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~ 257 (913)
.+++.++|++|+||||++..+.........-..+..|+... +.. .+-++.-.+.++..... .+..++...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 35899999999999999988876653112223455555432 221 12233333334443322 233444444443 22
Q ss_pred cCCeEEEEeCCCC
Q 045843 258 DKSYVLFLDEVST 270 (913)
Q Consensus 258 ~kr~LlVlDdv~~ 270 (913)
..=+||+|..-.
T Consensus 299 -~~DlVlIDt~G~ 310 (424)
T PRK05703 299 -DCDVILIDTAGR 310 (424)
T ss_pred -CCCEEEEeCCCC
Confidence 356788897643
No 255
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.01 E-value=0.019 Score=65.48 Aligned_cols=74 Identities=22% Similarity=0.362 Sum_probs=57.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHc--
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELK-- 257 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~-- 257 (913)
.-++.-++|++|+||||||+.|++... ..++-|..|+......+-..|...+... ..+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~--------------s~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNH--------------SVLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhc--------------cccccC
Confidence 357999999999999999999998754 3467888898888888877776655432 2232
Q ss_pred cCCeEEEEeCCCCcc
Q 045843 258 DKSYVLFLDEVSTEI 272 (913)
Q Consensus 258 ~kr~LlVlDdv~~~~ 272 (913)
+++.-||+|+++...
T Consensus 386 srP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAP 400 (877)
T ss_pred CCcceEEEecccCCc
Confidence 588899999998754
No 256
>PRK13695 putative NTPase; Provisional
Probab=96.00 E-value=0.0093 Score=58.44 Aligned_cols=34 Identities=35% Similarity=0.598 Sum_probs=25.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEE
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWV 217 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 217 (913)
.|+|.|.+|+|||||++.+++.... ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 5889999999999999999887653 234433343
No 257
>PRK04132 replication factor C small subunit; Provisional
Probab=96.00 E-value=0.14 Score=61.86 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=90.7
Q ss_pred CCCCcHHHHHHHHHHHhcccCCC-ceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeC
Q 045843 189 PPGVGKTTIMENLHDAIGESRQF-DFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDE 267 (913)
Q Consensus 189 ~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDd 267 (913)
|.++||||+|..++++.-- +.+ ...+-+..|....+..+.+.| +.+....+. -..+..++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~IR~iI-k~~a~~~~~-------------~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINVIREKV-KEFARTKPI-------------GGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHHHHHHH-HHHHhcCCc-------------CCCCCEEEEEEC
Confidence 7789999999999988631 122 245667777655555443333 222110000 012568999999
Q ss_pred CCCcc--ccccccCC--CCCCCceEEEEeech-hhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 045843 268 VSTEI--NLRDIGIH--DEHKNGKVVFACIFR-NICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARL 339 (913)
Q Consensus 268 v~~~~--~~~~~~~~--~~~~~s~iivTTR~~-~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~ 339 (913)
++... ....+.-- .....+++|++|.+. .+... .+..+.+.+++.++-.+.+.+.+... ...--++....
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E--gi~i~~e~L~~ 716 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE--GLELTEEGLQA 716 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc--CCCCCHHHHHH
Confidence 99864 33332111 223455666655543 33322 56789999999999988887766432 11123567889
Q ss_pred HHHHhCCcHHHHHHHHH
Q 045843 340 IINECGGMPHMIKLIGS 356 (913)
Q Consensus 340 I~~~c~GlPlai~~~~~ 356 (913)
|++.|+|.+-.+..+-.
T Consensus 717 Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 717 ILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 99999999854444433
No 258
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.00 E-value=0.0054 Score=61.55 Aligned_cols=101 Identities=30% Similarity=0.318 Sum_probs=56.4
Q ss_pred hhhhceeeeccccccCCCCCCCCCceeEEeeccC--cccc-CchHHHhcCCcccEEeccCCcccccC--ccccCccCcce
Q 045843 505 WEVANRISLIRMCLSTLPKRPKCCRILTLLLQES--SLAE-LPASFFGYMCSLQLLDLHDTKIKLLP--SSISSLTNLKA 579 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~--~l~~-l~~~~f~~l~~Lr~LdLs~~~i~~lp--~~i~~L~~L~~ 579 (913)
...+.++++.+..+.++...+.+++|+.|.++.| +... ++.-. ..+++|++|++++|+|+.+. .....+.||..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3456666766666666666677777777777777 3222 22222 45577777777777765321 12445566666
Q ss_pred eecCCccCccccC----hhhhccccCCEEecC
Q 045843 580 LFLNNCCQLMRLP----AEVGDLHNLEILDLS 607 (913)
Q Consensus 580 L~L~~c~~l~~lP----~~i~~L~~L~~L~L~ 607 (913)
|++.+|.... +- ..+.-+++|.+||-.
T Consensus 121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence 6666654322 21 123445555555543
No 259
>PRK09183 transposase/IS protein; Provisional
Probab=95.97 E-value=0.15 Score=53.24 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+.|+|++|+|||+||..+.+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999987653
No 260
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.96 E-value=0.034 Score=54.39 Aligned_cols=120 Identities=11% Similarity=0.112 Sum_probs=63.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC--CCCHHHHHHHHHHHccCCcc-------------CCCh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS--EGNIRDIQEVLLKRLDLRAE-------------DHNI 245 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~-------------~~~~ 245 (913)
-.+++|+|+.|.|||||.+.+..... .....+++.-.. ........ ..++.-.+ -+.-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCHH
Confidence 35899999999999999999987543 223333322110 01111111 11111000 0111
Q ss_pred HHHHHHHHHHHccCCeEEEEeCCCCccccccc------cCCCCCCCceEEEEeechhhhhcCCceEEc
Q 045843 246 DQRADMISEELKDKSYVLFLDEVSTEINLRDI------GIHDEHKNGKVVFACIFRNICGQIDEEVNV 307 (913)
Q Consensus 246 ~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~------~~~~~~~~s~iivTTR~~~v~~~~~~~~~l 307 (913)
+...-.+...+-.++-++++|+.....|.... .......|..||++|.+.......+.++.+
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l 168 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVL 168 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEE
Confidence 22333455666677889999998876443211 101122467788888877654334444444
No 261
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.93 E-value=0.0012 Score=76.61 Aligned_cols=144 Identities=14% Similarity=0.206 Sum_probs=64.4
Q ss_pred CcccCcceEEecccCCceEe-ecCCCcccccccCCceEecccccc---cchhcccccccccc-ccccEEeeccCcccccc
Q 045843 718 NKFGDVEACIVEDCNEMISI-IDGNLTEGVTFQHLKKLHISHLPK---LMHIWKGSIQSGSL-IMLETLILKRCHGMKTL 792 (913)
Q Consensus 718 ~~l~~L~~L~l~~~~~~~~~-~~~~l~~~~~~~~L~~L~l~~~~~---l~~~~~~~~~~~~l-~~L~~L~L~~c~~l~~l 792 (913)
..+++|++|++++|..+... +..... .+++|+.|.+..+.. ++..-..... ... ..+..+.+.+|++++++
T Consensus 292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~---~c~~l~~l~~~~~~~c~~l~~~~l~~~~-~~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGLTDSGLEALLK---NCPNLRELKLLSLNGCPSLTDLSLSGLL-TLTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred HhcCcccEEeeecCccchHHHHHHHHH---hCcchhhhhhhhcCCCccHHHHHHHHhh-ccCchhHhHHHHhcCCCcchh
Confidence 44567888888887665110 111022 466666666544332 2211110000 001 13444444444444444
Q ss_pred CchHHHhhcCCCc-EEEEccCchh-HhhhcCCcccCCCCCCccceeecccccccccccccCccC-CCCccEEeeecCccc
Q 045843 793 FSEEIIFQLNQIQ-YLQVEDCKEM-EEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLA-WPLLETITIKACDEL 869 (913)
Q Consensus 793 ~~~~~l~~l~~L~-~L~l~~~~~l-~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~-~p~L~~L~i~~C~~L 869 (913)
.....+ ..... .+.+.+|+.+ ..+.. ....+..|+.|.+..|...+.-....... +..+..+++.+|+.+
T Consensus 368 -~l~~~~-~~~~~~~~~l~gc~~l~~~l~~-----~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 368 -SLSYCG-ISDLGLELSLRGCPNLTESLEL-----RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred -hhhhhh-ccCcchHHHhcCCcccchHHHH-----HhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 111111 22222 3444555555 22211 22233337777777776555433211111 566677777777665
Q ss_pred ccc
Q 045843 870 RNF 872 (913)
Q Consensus 870 ~~l 872 (913)
..-
T Consensus 441 ~~~ 443 (482)
T KOG1947|consen 441 TLK 443 (482)
T ss_pred cch
Confidence 443
No 262
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.91 E-value=0.061 Score=60.77 Aligned_cols=184 Identities=18% Similarity=0.174 Sum_probs=106.4
Q ss_pred cCccccccchHHHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHH
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
+..+.+++|.+.....|...+...++. --...|+-|+||||+|+.++.-.--.. + ...+.+..=..-++|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhc
Confidence 344567789999999999999776543 456789999999999999987654221 1 11111111111222322
Q ss_pred H--ccC---Cc-cCCChHHHHHHHHHHH----ccCCeEEEEeCCCCc--cccccccCC--CCCCCce-EEEEeechhhhh
Q 045843 235 R--LDL---RA-EDHNIDQRADMISEEL----KDKSYVLFLDEVSTE--INLRDIGIH--DEHKNGK-VVFACIFRNICG 299 (913)
Q Consensus 235 ~--l~~---~~-~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~--~~~~~~~~~--~~~~~s~-iivTTR~~~v~~ 299 (913)
. +.. .. ....+++....+.+.. ++|.-+.|+|+|... ..|..+.-- .....-+ |+.||-...+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 2 000 00 0122333322222222 356779999999863 345544221 1222334 444555555554
Q ss_pred c---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcH
Q 045843 300 Q---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMP 348 (913)
Q Consensus 300 ~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (913)
- .+..|.++.++.++-...+...+..+ .-...++...-|++..+|..
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E--~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKE--GINIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhc--CCccCHHHHHHHHHHcCCCh
Confidence 4 66789999999999998888887654 23333455666677666654
No 263
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.87 E-value=0.045 Score=58.05 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=46.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC-CHHHHHHHHHHHccCCccC-CChHHHHHHHHHHHc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLRAED-HNIDQRADMISEELK 257 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~ 257 (913)
+..+++++|++|+||||++..+......+..-..+..|+..... ...+-+..-.+.++..... .+...+...+.. +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 34699999999999999999988776532111234445433211 1222333334444443322 233334333333 23
Q ss_pred cCCeEEEEeCC
Q 045843 258 DKSYVLFLDEV 268 (913)
Q Consensus 258 ~kr~LlVlDdv 268 (913)
+.=+|++|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 3457777753
No 264
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.027 Score=54.13 Aligned_cols=119 Identities=13% Similarity=0.184 Sum_probs=66.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC--CHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccC
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG--NIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDK 259 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 259 (913)
.+++|+|..|.|||||++.+..... .....+++...... .... ....+....+-+.-+...-.+...+-..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEE----LRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHH----HHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 6899999999999999999987553 33455554322111 1111 1111221111122233334456666677
Q ss_pred CeEEEEeCCCCcccccc---c---cCCCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 260 SYVLFLDEVSTEINLRD---I---GIHDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 260 r~LlVlDdv~~~~~~~~---~---~~~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
+-++++|+.....|-.. + .......+..+|++|.+...... .++.+.+
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l 153 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVL 153 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 89999999987544221 1 00111225678888887766555 4555544
No 265
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.86 E-value=0.05 Score=52.39 Aligned_cols=40 Identities=30% Similarity=0.442 Sum_probs=30.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN 224 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (913)
++.|+|++|+||||++..+..... ..-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcchH
Confidence 468999999999999999988775 3445677777766543
No 266
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.072 Score=52.67 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHccCCeEEEEeCCCCccccccccCC------CCCCCceEEEEeechhhhhc--CCceE
Q 045843 246 DQRADMISEELKDKSYVLFLDEVSTEINLRDIGIH------DEHKNGKVVFACIFRNICGQ--IDEEV 305 (913)
Q Consensus 246 ~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~------~~~~~s~iivTTR~~~v~~~--~~~~~ 305 (913)
+.....+.+.+--++-+.|||+.++..|.+.+... -...|+.+++.|..+.+... ++.+|
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 34445556666668889999999998776655322 24557788888888888776 34444
No 267
>PRK06696 uridine kinase; Validated
Probab=95.85 E-value=0.014 Score=59.79 Aligned_cols=43 Identities=30% Similarity=0.337 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHh---cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 164 SLNKHLKMLQECLR---NVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 164 gr~~~~~~l~~~L~---~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|...+++|.+.+. .....+|+|.|.+|+||||+|+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46667777777773 34677999999999999999999998774
No 268
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.03 Score=52.00 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=35.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA 240 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 240 (913)
+|.|-|++|+||||+|+.+.++.... ++ +.-.++++|++..+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~---------~v----saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK---------LV----SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc---------ee----eccHHHHHHHHHcCCCH
Confidence 78999999999999999999888621 12 23367888888887754
No 269
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.33 Score=52.07 Aligned_cols=169 Identities=8% Similarity=0.004 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCCc--e-----EEEEEeCCCCCHHHHHHHHHHHccC
Q 045843 167 KHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQFD--F-----IFWVTVNSEGNIRDIQEVLLKRLDL 238 (913)
Q Consensus 167 ~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~--~-----~~wv~vs~~~~~~~i~~~i~~~l~~ 238 (913)
...+.+.+.+..++++ .+-+.|+.|+||+++|+.+....--.+.-+ | .-++..+..+|...+ ..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------KP 81 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 4556677777666554 688999999999999998876553211100 0 000000011111000 00
Q ss_pred Cc--cCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEEEeec-hhhhhc---CCc
Q 045843 239 RA--EDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVFACIF-RNICGQ---IDE 303 (913)
Q Consensus 239 ~~--~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iivTTR~-~~v~~~---~~~ 303 (913)
.. ..-.+++.. .+.+.+ .+++-++|+|++.... ....+.- .....++.+|++|.+ ..+..- ...
T Consensus 82 ~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 82 EKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred CcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce
Confidence 00 001222222 223333 2566789999988753 2222211 123344556655554 444332 566
Q ss_pred eEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 304 EVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 304 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
.+.+.+++.+++.+.+.... .+ ....+++.++|.|+.+..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~------~~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQG------IT----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eEeCCCCCHHHHHHHHHHcC------Cc----hHHHHHHHcCCCHHHHHHH
Confidence 89999999999998886531 11 2357789999999876554
No 270
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.81 E-value=0.022 Score=69.73 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHHhc-------C--CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 161 EVPSLNKHLKMLQECLRN-------V--GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.++|.+..++.+.+.+.. + ...++.++|+.|+|||.+|+.+....-
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999888731 1 234789999999999999999887653
No 271
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.79 E-value=0.0045 Score=37.05 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=11.6
Q ss_pred ccEEeccCCcccccCccccC
Q 045843 554 LQLLDLHDTKIKLLPSSISS 573 (913)
Q Consensus 554 Lr~LdLs~~~i~~lp~~i~~ 573 (913)
|++|||++|+++.+|++|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55666666666666655443
No 272
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.76 E-value=0.041 Score=56.14 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=32.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN 224 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (913)
.-.++.|.|.+|+||||+|.+++.... .+-..++|+.....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCCH
Confidence 346899999999999999999987764 3344677887655544
No 273
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.76 E-value=0.079 Score=57.84 Aligned_cols=133 Identities=16% Similarity=0.139 Sum_probs=76.8
Q ss_pred ccchHHHHHHHHHHHh-cCCCcE-EEEECCCCCcHHHHHHHHHHHhcccC-------------------CCceEEEEEeC
Q 045843 162 VPSLNKHLKMLQECLR-NVGTKR-ICIWGPPGVGKTTIMENLHDAIGESR-------------------QFDFIFWVTVN 220 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L~-~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs 220 (913)
++|-+....++..+.. ..+.+. +-++|+.|+||||+|..+.+..--.. ....+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4577778888888876 344555 99999999999999999998775222 11233344444
Q ss_pred CCCC---HHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEee
Q 045843 221 SEGN---IRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFACI 293 (913)
Q Consensus 221 ~~~~---~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTTR 293 (913)
.... ..+..+++.+....... .++.-++++|+++.... -..+. .......+.+|++|.
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~---------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL---------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC---------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 3332 22223333332221110 25788999999987532 11111 114455677777777
Q ss_pred ch-hhhhc---CCceEEccc
Q 045843 294 FR-NICGQ---IDEEVNVQR 309 (913)
Q Consensus 294 ~~-~v~~~---~~~~~~l~~ 309 (913)
.. .+... ....+++.+
T Consensus 148 ~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 148 DPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred ChhhccchhhhcceeeecCC
Confidence 33 23221 445666666
No 274
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.18 Score=50.38 Aligned_cols=55 Identities=24% Similarity=0.426 Sum_probs=43.7
Q ss_pred cccccCccccccchHHHHHHHHHHHh-------------cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 152 IKKHAKKMEEVPSLNKHLKMLQECLR-------------NVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 152 ~~~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...|+....++-|-+..++++++.+. -...+-+.++|++|.|||-+|++.+....
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 45677777777899999999998872 12346788999999999999999886654
No 275
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.70 E-value=0.033 Score=59.39 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=57.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc------cCCChHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA------EDHNIDQRADMIS 253 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~------~~~~~~~~~~~l~ 253 (913)
.-+++-|+|++|+||||||.++..... ..-..++|+..-..++.. .+++++... +....++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~--~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 346899999999999999998877664 334567888777666553 345554432 1234555555665
Q ss_pred HHHc-cCCeEEEEeCCCC
Q 045843 254 EELK-DKSYVLFLDEVST 270 (913)
Q Consensus 254 ~~l~-~kr~LlVlDdv~~ 270 (913)
..++ +..-+||+|-|-.
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 5554 4677999999864
No 276
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.66 E-value=0.013 Score=66.06 Aligned_cols=47 Identities=19% Similarity=0.385 Sum_probs=40.8
Q ss_pred ccccchHHHHHHHHHHH------hcCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 160 EEVPSLNKHLKMLQECL------RNVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L------~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+++|.++.++.|++.| .+..-+++.++|++|+||||||+.+.+-.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 36789999999999988 234567999999999999999999998774
No 277
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.66 E-value=0.11 Score=58.12 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...++.++|++|+||||.|..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 356999999999999999988887653
No 278
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.088 Score=62.11 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=87.3
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccC---CC-ceEEEEEeCCCCCHHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESR---QF-DFIFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~i~~~i~ 233 (913)
....++||+++++++++.|....-.--.++|.+|+|||+++.-++.+.-..+ .. +..++. -++.
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------LD~g 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------LDLG 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------ecHH
Confidence 3445789999999999999655444556789999999999988776653111 00 111110 0111
Q ss_pred HHccCCccCCChHHHHHHHHHHHc-cCCeEEEEeCCCCcc----------ccccccCCCCCCC--ceEEEEeechhh---
Q 045843 234 KRLDLRAEDHNIDQRADMISEELK-DKSYVLFLDEVSTEI----------NLRDIGIHDEHKN--GKVVFACIFRNI--- 297 (913)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~----------~~~~~~~~~~~~~--s~iivTTR~~~v--- 297 (913)
.-+.+..-..+.+++...+-+.++ .++..|++|++.... +-..+.-|.-..| -.|=.||-++.=
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~i 315 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYI 315 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHh
Confidence 111222222455555555555553 568999999987632 1112233422233 234455544321
Q ss_pred ----hhc-CCceEEcccCChHHHHHHHHHHh
Q 045843 298 ----CGQ-IDEEVNVQRLSGKDAQKLFWETV 323 (913)
Q Consensus 298 ----~~~-~~~~~~l~~L~~~~~~~Lf~~~~ 323 (913)
|-. ...++.+..-+.+++...++-..
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 111 45677778888888877776543
No 279
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.2 Score=53.30 Aligned_cols=46 Identities=28% Similarity=0.517 Sum_probs=34.6
Q ss_pred cccchHHHHHHHHHHHh------------cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 161 EVPSLNKHLKMLQECLR------------NVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
++.|-++.++-|.+.+. ...-+-|.++|++|.|||-||++|+..-.
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 45666666666666551 12346789999999999999999998876
No 280
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.043 Score=62.45 Aligned_cols=73 Identities=25% Similarity=0.386 Sum_probs=51.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC--CCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHcc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE--GNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKD 258 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 258 (913)
..-|-|.|+.|+|||+||+.+++... +++.-.+.+|+++.- ...+.+++.+- ....+.++-
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~----------------~vfse~~~~ 493 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLN----------------NVFSEALWY 493 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHH----------------HHHHHHHhh
Confidence 35789999999999999999999887 555556677777653 12333333221 123344566
Q ss_pred CCeEEEEeCCCC
Q 045843 259 KSYVLFLDEVST 270 (913)
Q Consensus 259 kr~LlVlDdv~~ 270 (913)
.+-+|||||++.
T Consensus 494 ~PSiIvLDdld~ 505 (952)
T KOG0735|consen 494 APSIIVLDDLDC 505 (952)
T ss_pred CCcEEEEcchhh
Confidence 899999999875
No 281
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.56 E-value=0.077 Score=55.09 Aligned_cols=127 Identities=20% Similarity=0.268 Sum_probs=70.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhccc-CC--Cc--eEEEEEeC----CCCCHHHHH--------------HHHHHHccC
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGES-RQ--FD--FIFWVTVN----SEGNIRDIQ--------------EVLLKRLDL 238 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~--F~--~~~wv~vs----~~~~~~~i~--------------~~i~~~l~~ 238 (913)
.+++|+|+.|+|||||++.+....... +. ++ .+.++.-. ...++.+.+ .++++.++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 589999999999999999998754321 11 11 12222111 011222222 223444433
Q ss_pred Cc------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccccc-----CC--CCCCCceEEEEeechhhhhc-CCc
Q 045843 239 RA------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDIG-----IH--DEHKNGKVVFACIFRNICGQ-IDE 303 (913)
Q Consensus 239 ~~------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~-----~~--~~~~~s~iivTTR~~~v~~~-~~~ 303 (913)
.. .. +.-+...-.+...|-.++-+++||+.....|..... +. ....+..||++|.+...+.. ++.
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~ 185 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADR 185 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 21 01 222333344566777888999999988765543211 11 22346778888888766554 555
Q ss_pred eEEcc
Q 045843 304 EVNVQ 308 (913)
Q Consensus 304 ~~~l~ 308 (913)
++.+.
T Consensus 186 i~~l~ 190 (246)
T cd03237 186 LIVFE 190 (246)
T ss_pred EEEEc
Confidence 55553
No 282
>PRK06547 hypothetical protein; Provisional
Probab=95.53 E-value=0.022 Score=55.39 Aligned_cols=36 Identities=31% Similarity=0.390 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 171 MLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 171 ~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+...+......+|+|.|++|+||||+|+.+.....
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445567788999999999999999999988754
No 283
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.53 E-value=0.16 Score=60.51 Aligned_cols=148 Identities=18% Similarity=0.279 Sum_probs=81.1
Q ss_pred cccccchHHHHHHHHHH---Hhc---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHH
Q 045843 159 MEEVPSLNKHLKMLQEC---LRN---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIR 226 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~---L~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 226 (913)
+.++.|.+...+++.+. +.+ .-.+-|.++|++|+|||++|+.+.+... ..| +.++..
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--~~f-----~~is~~---- 219 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPF-----FTISGS---- 219 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCE-----EEEehH----
Confidence 33566766665555443 322 1123589999999999999999988765 233 222221
Q ss_pred HHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc------------cc----cccCC----CCCCCc
Q 045843 227 DIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN------------LR----DIGIH----DEHKNG 286 (913)
Q Consensus 227 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------------~~----~~~~~----~~~~~s 286 (913)
++.. + . .+.........+...-...+.+|++||++..-. .+ .+... ....+.
T Consensus 220 ~~~~-~---~----~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 220 DFVE-M---F----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred HhHH-h---h----hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 1111 0 0 011112222233333345788999999876311 11 11000 123344
Q ss_pred eEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCC
Q 045843 287 KVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGV 325 (913)
Q Consensus 287 ~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~ 325 (913)
-+|.||...+.... .+..+.++.-+.++-.+++..+...
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 55567766554332 3567788888888888888777654
No 284
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.51 E-value=0.04 Score=58.80 Aligned_cols=83 Identities=16% Similarity=0.226 Sum_probs=56.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc------cCCChHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA------EDHNIDQRADMISE 254 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~------~~~~~~~~~~~l~~ 254 (913)
-+++-|+|++|+||||||.+++.... ..-..++||.....++.. .+++++... +..+.++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~--~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQ--KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 46889999999999999999876654 344568898887776653 344444332 11344555555555
Q ss_pred HHc-cCCeEEEEeCCCC
Q 045843 255 ELK-DKSYVLFLDEVST 270 (913)
Q Consensus 255 ~l~-~kr~LlVlDdv~~ 270 (913)
.++ +..-+||+|-|-.
T Consensus 128 li~s~~~~lIVIDSvaa 144 (325)
T cd00983 128 LVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHhccCCCEEEEcchHh
Confidence 554 4567999999764
No 285
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.51 E-value=0.092 Score=53.35 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=68.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhccc-CC--Cc-----------eEEEEEeCCC----CCHH---------------
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGES-RQ--FD-----------FIFWVTVNSE----GNIR--------------- 226 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~--F~-----------~~~wv~vs~~----~~~~--------------- 226 (913)
.-.+++|+|..|.|||||++.+....... +. |+ .+.++.-... .++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~ 115 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAK 115 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHH
Confidence 34589999999999999999998654321 10 11 1223321111 1111
Q ss_pred HHHHHHHHHccCCcc------C-CChHHHHHHHHHHHccCCeEEEEeCCCCccccccc------cCCCCCCCceEEEEee
Q 045843 227 DIQEVLLKRLDLRAE------D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDI------GIHDEHKNGKVVFACI 293 (913)
Q Consensus 227 ~i~~~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~------~~~~~~~~s~iivTTR 293 (913)
+....+++.++.... . +.-+...-.+...+-.++-++++|+.....|.+.. .......|..||++|.
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 195 (214)
T PRK13543 116 QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195 (214)
T ss_pred HHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 112233444443210 0 12233334455556667789999998876543321 1111234667888988
Q ss_pred chhhhhc-CCceEEc
Q 045843 294 FRNICGQ-IDEEVNV 307 (913)
Q Consensus 294 ~~~v~~~-~~~~~~l 307 (913)
+...... ....+.+
T Consensus 196 ~~~~~~~~~~~i~~l 210 (214)
T PRK13543 196 GAYAAPPVRTRMLTL 210 (214)
T ss_pred ChhhhhhhcceEEEE
Confidence 8776554 4444443
No 286
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.50 E-value=0.84 Score=54.59 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHHHHccCCeEEEEeCCCCcccccccc------CCCCCCCceEEEEeechhhhh
Q 045843 248 RADMISEELKDKSYVLFLDEVSTEINLRDIG------IHDEHKNGKVVFACIFRNICG 299 (913)
Q Consensus 248 ~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~------~~~~~~~s~iivTTR~~~v~~ 299 (913)
..-.|.+.+-.++-+|+||+..+..|-+.-. .......+.|+||-|...+..
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 3345677788899999999998865433211 112344677888888776644
No 287
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.49 E-value=0.14 Score=47.87 Aligned_cols=110 Identities=10% Similarity=0.116 Sum_probs=75.0
Q ss_pred HhccccchhhcccchhhHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Q 045843 12 AAGSLVGPAVEGGTGILHCLKRKYLYVKNMSKNLRNLEREEKYLCDEEADVKTRLERNKLKMEKSRRCETWLNEVERMKD 91 (913)
Q Consensus 12 ~a~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~l~~a~~~~~~~~~~~~wl~~l~~~~~ 91 (913)
+++|++|.+++ .|...+.+..+-...++.-.+.|...++.|.-++.+|+.. .+. -+..-+.-++++.+...
T Consensus 6 ~~gaalG~~~~---eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~-~~e-----ld~~~~ee~e~L~~~L~ 76 (147)
T PF05659_consen 6 VGGAALGAVFG---ELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKL-NVE-----LDRPRQEEIERLKELLE 76 (147)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH-hhh-----cCCchhHHHHHHHHHHH
Confidence 33344444444 4444777777777788888899999999999888887642 111 12222566788888899
Q ss_pred HHHHHHHhhhhccccccCCCCCcchhhhhHHHHHHHHHHHHHHH
Q 045843 92 EIETLKSSYSSTHKFLCGICPFPSLLQLGKQIVKLTAEVVSLRK 135 (913)
Q Consensus 92 ~~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 135 (913)
+++++++.|..-. .+++...++.+++|.++-+.+.....
T Consensus 77 ~g~~LV~k~sk~~-----r~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 77 KGKELVEKCSKVR-----RWNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHhcccc-----HHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 9999999886533 23455677888888888877766543
No 288
>PRK08233 hypothetical protein; Provisional
Probab=95.49 E-value=0.043 Score=54.11 Aligned_cols=26 Identities=42% Similarity=0.461 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|+|.|++|+||||+|+.+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999997764
No 289
>PRK10867 signal recognition particle protein; Provisional
Probab=95.48 E-value=0.13 Score=57.41 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|.++|++|+||||.+..++....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357999999999999998887776554
No 290
>PRK09354 recA recombinase A; Provisional
Probab=95.47 E-value=0.049 Score=58.63 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=58.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc------cCCChHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA------EDHNIDQRADMIS 253 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~------~~~~~~~~~~~l~ 253 (913)
.-+++-|+|++|+||||||.+++.... ..-..++||..-..++.. .+++++... +....++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 346889999999999999999876665 444678899888877753 345555432 1234555555565
Q ss_pred HHHc-cCCeEEEEeCCCC
Q 045843 254 EELK-DKSYVLFLDEVST 270 (913)
Q Consensus 254 ~~l~-~kr~LlVlDdv~~ 270 (913)
..++ ++.-+||+|-|-.
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 5554 4667999999864
No 291
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.46 E-value=0.12 Score=57.93 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=48.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC--HHHHHHHHHHHccCCccC----CChHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN--IRDIQEVLLKRLDLRAED----HNIDQRADMIS 253 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~----~~~~~~~~~l~ 253 (913)
...+|.++|.+|+||||.|..++..... ..+ .+.-|++. .+. ..+.++.+.++++..... .+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4579999999999999999999887762 223 23333332 222 344466666666554321 12222222222
Q ss_pred HHHccCCeEEEEeCCC
Q 045843 254 EELKDKSYVLFLDEVS 269 (913)
Q Consensus 254 ~~l~~kr~LlVlDdv~ 269 (913)
+.+++. =+||+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333333 567788764
No 292
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.45 E-value=0.66 Score=50.36 Aligned_cols=170 Identities=11% Similarity=0.088 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCCc-EEEEECCCCCcHHHHHHHHHHHhcccCCC---ceE-----EEEEeCCCCCHHHHHHHHHHHcc
Q 045843 167 KHLKMLQECLRNVGTK-RICIWGPPGVGKTTIMENLHDAIGESRQF---DFI-----FWVTVNSEGNIRDIQEVLLKRLD 237 (913)
Q Consensus 167 ~~~~~l~~~L~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F---~~~-----~wv~vs~~~~~~~i~~~i~~~l~ 237 (913)
..-+.+.+.+..++++ -+-+.|+.|+||+++|..+....--...- .|- -++.....+|+..+ .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------T 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e
Confidence 4556777777766554 56699999999999999887665321110 000 00001111111110 0
Q ss_pred CCc--cCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEeec-hhhhhc---CC
Q 045843 238 LRA--EDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFACIF-RNICGQ---ID 302 (913)
Q Consensus 238 ~~~--~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTTR~-~~v~~~---~~ 302 (913)
... ..-.+++.. .+.+.+ .+++-++|+|+++.... ...+. +..-..++.+|++|.+ +.+..- ..
T Consensus 81 p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 81 PEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred cccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 000 011222222 222222 36778999999887432 22221 1122345555555554 444322 45
Q ss_pred ceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHH
Q 045843 303 EEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIK 352 (913)
Q Consensus 303 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 352 (913)
..+.+.+++.+++.+.+.+.... ..+.+..++..++|.|..+.
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~~-------~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREVTM-------SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccCCCCCHHHHHHHHHHccCC-------CHHHHHHHHHHcCCCHHHHH
Confidence 67899999999998888654211 13346788999999996443
No 293
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.43 E-value=0.059 Score=56.17 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=57.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC----CCceEEEEEeCCCCCHHHHHHHHHHHccCCcc----------CCChH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR----QFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----------DHNID 246 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~~ 246 (913)
-.+.=|+|.+|+|||.|+.+++-...... .=..++|++-...|+.+++. +|++..+...+ -.+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 35889999999999999998876654322 22469999988889888775 46665543221 12333
Q ss_pred HH---HHHHHHHH-ccCCeEEEEeCCCC
Q 045843 247 QR---ADMISEEL-KDKSYVLFLDEVST 270 (913)
Q Consensus 247 ~~---~~~l~~~l-~~kr~LlVlDdv~~ 270 (913)
++ ...+...+ ..+--|||+|.+-.
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHH
Confidence 33 33333444 34556999999764
No 294
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.43 E-value=0.073 Score=57.08 Aligned_cols=90 Identities=11% Similarity=0.189 Sum_probs=57.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhccc----CCCceEEEEEeCCCCCHHHHHHHHHHHccCCccC----------CCh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGES----RQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAED----------HNI 245 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------~~~ 245 (913)
.-+++-|+|++|+|||+++.+++-..... ..=..++||+....|+++++.+ ++++++...+. .+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 34588899999999999998876443321 1124789999988888888764 56666543211 122
Q ss_pred HHH---HHHHHHHHc-cCCeEEEEeCCCC
Q 045843 246 DQR---ADMISEELK-DKSYVLFLDEVST 270 (913)
Q Consensus 246 ~~~---~~~l~~~l~-~kr~LlVlDdv~~ 270 (913)
++. ...+...+. ++--|||+|.+-.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 222 233333443 4556899998764
No 295
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.085 Score=53.84 Aligned_cols=125 Identities=16% Similarity=0.261 Sum_probs=73.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcc-----c------CCC---ceEEEEEe----CCCC--CH----------------
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGE-----S------RQF---DFIFWVTV----NSEG--NI---------------- 225 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~-----~------~~F---~~~~wv~v----s~~~--~~---------------- 225 (913)
..++|+|+.|.|||||.+.+..-..- . ..+ ..+.||.= ...| .+
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 68999999999999999999863321 0 001 23444431 1111 11
Q ss_pred ------HHHHHHHHHHccCCc------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCccccc------cccCC-CCCCC
Q 045843 226 ------RDIQEVLLKRLDLRA------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLR------DIGIH-DEHKN 285 (913)
Q Consensus 226 ------~~i~~~i~~~l~~~~------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~------~~~~~-~~~~~ 285 (913)
++...+.++.++... .. +.-+...-.|.+.|-.++=|+|||+--...|-. ++... ... |
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g 189 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-G 189 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-C
Confidence 234445556665433 11 333444556788889999999999976644322 11111 333 8
Q ss_pred ceEEEEeechhhhhc-CCceEEc
Q 045843 286 GKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 286 s~iivTTR~~~v~~~-~~~~~~l 307 (913)
..|+++|.+-..... .+.++-+
T Consensus 190 ~tIl~vtHDL~~v~~~~D~vi~L 212 (254)
T COG1121 190 KTVLMVTHDLGLVMAYFDRVICL 212 (254)
T ss_pred CEEEEEeCCcHHhHhhCCEEEEE
Confidence 999999998665444 4444433
No 296
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.17 Score=59.38 Aligned_cols=171 Identities=18% Similarity=0.269 Sum_probs=98.2
Q ss_pred ccccccchHHHHHHHHHH---HhcC---------CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCH
Q 045843 158 KMEEVPSLNKHLKMLQEC---LRNV---------GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNI 225 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~---L~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (913)
.+.++.|.++..++|.+. |.++ -++-+-++|++|+|||-||++++.... +-|+.+|..-
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGSE-- 379 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGSE-- 379 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechHH--
Confidence 345778988776666554 4332 245788999999999999999998876 3345555431
Q ss_pred HHHHHHHHHHccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCccc-----------------cccccCC-C--CCC
Q 045843 226 RDIQEVLLKRLDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTEIN-----------------LRDIGIH-D--EHK 284 (913)
Q Consensus 226 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~-----------------~~~~~~~-~--~~~ 284 (913)
..+.+.... ..++..|-..- ...+..|.+|+++..-. +.++... + ...
T Consensus 380 ------FvE~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 380 ------FVEMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ------HHHHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 111111100 11222222222 24577888888765311 1111111 1 112
Q ss_pred Cce-EEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHH
Q 045843 285 NGK-VVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHM 350 (913)
Q Consensus 285 ~s~-iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 350 (913)
+.. ++-+|+..++... .+..+.++.=+...-.++|..++.... -..+..++++ |+...-|.+=|
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~-~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK-LDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC-CCcchhhHHH-HHhcCCCCcHH
Confidence 223 3344554444332 456788888888888899998886652 1145566666 88888887743
No 297
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.42 E-value=0.097 Score=53.80 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=25.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
....+++|.|+.|.|||||++.+....+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999998776
No 298
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.42 E-value=0.01 Score=61.81 Aligned_cols=106 Identities=20% Similarity=0.188 Sum_probs=68.0
Q ss_pred hhhceeeeccccccCCCCC------CCCCceeEEeeccCcccc----CchHHHhcCCcccEEeccCCccc-----ccCcc
Q 045843 506 EVANRISLIRMCLSTLPKR------PKCCRILTLLLQESSLAE----LPASFFGYMCSLQLLDLHDTKIK-----LLPSS 570 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~------~~~~~Lr~L~l~~~~l~~----l~~~~f~~l~~Lr~LdLs~~~i~-----~lp~~ 570 (913)
.++|.+...+|.+..-+.. ..++.|..+.++.|.+.. +....|..+++|++|||.+|-++ .+...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4566676777766554432 455778888888774432 12233577888888888888766 34456
Q ss_pred ccCccCcceeecCCccCccccCh----hh-hccccCCEEecCCCcC
Q 045843 571 ISSLTNLKALFLNNCCQLMRLPA----EV-GDLHNLEILDLSHTGI 611 (913)
Q Consensus 571 i~~L~~L~~L~L~~c~~l~~lP~----~i-~~L~~L~~L~L~~~~~ 611 (913)
++.+++|+.|+++.|.--..-.. .+ ...++|+.|.+.+|.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 67777888888888743222211 22 2367888888888876
No 299
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.42 E-value=0.043 Score=53.97 Aligned_cols=120 Identities=15% Similarity=0.195 Sum_probs=64.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE---eCCCC-CHHHHHHHHHHHccC--Cc----cC--------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT---VNSEG-NIRDIQEVLLKRLDL--RA----ED-------- 242 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~-~~~~i~~~i~~~l~~--~~----~~-------- 242 (913)
-.+++|+|+.|.|||||++.+..... .....+.+. ++... ..... .+.+.. +. ..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~----~~~i~~~~q~~~~~~~~t~~~~l~ 98 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPPL----RRRIGMVFQDFALFPHLTVLENIA 98 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHHH----hhcEEEEecCCccCCCCCHHHhee
Confidence 35899999999999999999985442 233444332 11100 01111 111110 00 00
Q ss_pred ---CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc---c---cCC-CCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 243 ---HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD---I---GIH-DEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 243 ---~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~---~---~~~-~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
+.-+...-.+...+-.++-++++|+.....|-.. + ... ....|..||++|.+...... .++.+.+
T Consensus 99 ~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 174 (178)
T cd03229 99 LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVL 174 (178)
T ss_pred ecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 0112233345666677889999999877544221 1 111 12236778888887665543 5555544
No 300
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.043 Score=60.32 Aligned_cols=48 Identities=29% Similarity=0.574 Sum_probs=37.4
Q ss_pred cccccchHH---HHHHHHHHHhcC--------C-CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 159 MEEVPSLNK---HLKMLQECLRNV--------G-TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 159 ~~~~~gr~~---~~~~l~~~L~~~--------~-~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+.++-|.|+ ++++|+++|.++ + .+-|-++|++|.|||-||++|+....
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 445667764 567788888653 2 45788999999999999999998776
No 301
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.4 Score=55.71 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=85.1
Q ss_pred ccccchHHHHHHHHHHHh-------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHH
Q 045843 160 EEVPSLNKHLKMLQECLR-------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIR 226 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 226 (913)
.++.|.+...+.+.+.+. -...+.+-++|++|.|||.||+++++..+ .+|-.+.+-.
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~~~~-------- 311 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVKGSE-------- 311 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEeeCHH--------
Confidence 345566655555544431 12455899999999999999999999665 4443322111
Q ss_pred HHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcccccc---------c----cCC----CCCCCceEE
Q 045843 227 DIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEINLRD---------I----GIH----DEHKNGKVV 289 (913)
Q Consensus 227 ~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~---------~----~~~----~~~~~s~ii 289 (913)
++. ..-+.............-+..+..|.+|+++....+.. + ... ....+-.||
T Consensus 312 -----l~s----k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 312 -----LLS----KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred -----Hhc----cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 110 00112222333333344457899999999987432221 1 100 222233344
Q ss_pred EEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC
Q 045843 290 FACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ 326 (913)
Q Consensus 290 vTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~ 326 (913)
-||........ ....+.+.+-+.++..+.|+.+....
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 45544333221 45688999999999999999988743
No 302
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.094 Score=51.13 Aligned_cols=121 Identities=16% Similarity=0.193 Sum_probs=63.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC--CCCHHHHHHHHHHHccCCcc-------------CCC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS--EGNIRDIQEVLLKRLDLRAE-------------DHN 244 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~-------------~~~ 244 (913)
.-.+++|+|+.|.|||||.+.++.-.. .....+++.-.. ....... ...++.-.+ -+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCH
Confidence 345899999999999999999987643 223333332110 0011111 111110000 011
Q ss_pred hHHHHHHHHHHHccCCeEEEEeCCCCcccccc---cc--CCCCCCCceEEEEeechhhhhcCCceEEc
Q 045843 245 IDQRADMISEELKDKSYVLFLDEVSTEINLRD---IG--IHDEHKNGKVVFACIFRNICGQIDEEVNV 307 (913)
Q Consensus 245 ~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~---~~--~~~~~~~s~iivTTR~~~v~~~~~~~~~l 307 (913)
-+...-.+...+-.++-+++||+.....|... +. +.....+..||++|.+......++..+.+
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l 167 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 12223345566667888999999887644321 10 00112356788888876654334444443
No 303
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.078 Score=57.86 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=50.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-CCHHHHHHHHHHHccCCccC-CChHHHHHHHHHHHcc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE-GNIRDIQEVLLKRLDLRAED-HNIDQRADMISEELKD 258 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~~ 258 (913)
-.++.++|+.|+||||++..+......+.....+..++.... ....+-++...+.++..... .+..++...+. .+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 469999999999999999999887642222234445543221 23444555556666655432 22223333332 3344
Q ss_pred CCeEEEEeCCCC
Q 045843 259 KSYVLFLDEVST 270 (913)
Q Consensus 259 kr~LlVlDdv~~ 270 (913)
+ =+|++|..-.
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 4 5566898754
No 304
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.37 E-value=0.59 Score=50.68 Aligned_cols=87 Identities=10% Similarity=0.039 Sum_probs=53.5
Q ss_pred cCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEEEeec-hhhhhc---CCceEEcccCChHHHHHHHHHHhCCCCCC
Q 045843 258 DKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVFACIF-RNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKD 329 (913)
Q Consensus 258 ~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iivTTR~-~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 329 (913)
+++-++|+|++.... .+..+.- ..-..++.+|++|.+ +.+..- ....+.+.+++.++..+.+.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~----- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV----- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC-----
Confidence 566789999998753 2332211 123345555555544 544332 457899999999999988876511
Q ss_pred CCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 330 CRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 330 ~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
+. ...++..++|.|..+..+
T Consensus 206 -~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 233577889999755544
No 305
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.35 E-value=0.15 Score=55.23 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=45.6
Q ss_pred CCcEEEEECCCCCcHH-HHHHHHHHHhcccCCCceEEEEEeCCC-CCHHHHHHHHHHHccCCccC-CChHHHHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKT-TIMENLHDAIGESRQFDFIFWVTVNSE-GNIRDIQEVLLKRLDLRAED-HNIDQRADMISEEL 256 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKT-tLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~l 256 (913)
+-++|.+||+.|+||| |||+..+.-... ..=..+..++.... -...+-++.-.+-++.+..- .+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 4789999999999999 566666554411 22233455554332 12233344444555555433 3334444333322
Q ss_pred ccCCeEEEEeCCCC
Q 045843 257 KDKSYVLFLDEVST 270 (913)
Q Consensus 257 ~~kr~LlVlDdv~~ 270 (913)
+.+ =+|.+|-+-.
T Consensus 280 ~~~-d~ILVDTaGr 292 (407)
T COG1419 280 RDC-DVILVDTAGR 292 (407)
T ss_pred hcC-CEEEEeCCCC
Confidence 223 3455565543
No 306
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.12 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|+|||||++.+....
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 307
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.32 E-value=0.078 Score=55.44 Aligned_cols=121 Identities=16% Similarity=0.126 Sum_probs=66.8
Q ss_pred HHHHHHHHh-cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE---eCCCCCHHHHHHHHHHHccC-Ccc--
Q 045843 169 LKMLQECLR-NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT---VNSEGNIRDIQEVLLKRLDL-RAE-- 241 (913)
Q Consensus 169 ~~~l~~~L~-~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~i~~~i~~~l~~-~~~-- 241 (913)
.+.++..+. ......++|+|+.|+|||||.+.+..... .....+++. +...-+..+ +...... ...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~d~~~e----i~~~~~~~~q~~~ 170 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIVDERSE----IAGCVNGVPQHDV 170 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecchhHHH----HHHHhcccccccc
Confidence 344444443 34457899999999999999999987664 223333332 111111222 3222211 110
Q ss_pred -----CCChHHHHHHHHHHHc-cCCeEEEEeCCCCccccccccCCCCCCCceEEEEeechhh
Q 045843 242 -----DHNIDQRADMISEELK-DKSYVLFLDEVSTEINLRDIGIHDEHKNGKVVFACIFRNI 297 (913)
Q Consensus 242 -----~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~~~~~~~~s~iivTTR~~~v 297 (913)
--+.......+...+. -.+-+|++|++...+.+..+... ...|..||+||.+..+
T Consensus 171 ~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~-~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 171 GIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEA-LHAGVSIIATAHGRDV 231 (270)
T ss_pred cccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHH-HhCCCEEEEEechhHH
Confidence 0011111223444443 57899999999876655443221 2357889999987665
No 308
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.32 E-value=0.097 Score=51.97 Aligned_cols=113 Identities=17% Similarity=0.340 Sum_probs=68.4
Q ss_pred CccccccchHHHHHHHHHH----HhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQEC----LRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~----L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 232 (913)
.+...++|.+...+.+++- +.+....-|-+||--|.||++|++++.+... ...-. -|.|++.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~--~~glr--LVEV~k~---------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA--DEGLR--LVEVDKE---------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHH--hcCCe--EEEEcHH----------
Confidence 4455678998888888753 3455667899999999999999999998876 33322 3333332
Q ss_pred HHHccCCccCCChHHHHHHHHHHH--ccCCeEEEEeCCCCccc---cccccC-----CCCCCCceEEEEeech
Q 045843 233 LKRLDLRAEDHNIDQRADMISEEL--KDKSYVLFLDEVSTEIN---LRDIGI-----HDEHKNGKVVFACIFR 295 (913)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~---~~~~~~-----~~~~~~s~iivTTR~~ 295 (913)
++.. ...|.+.| ...||.|..||..-+.. ...+.. ..+.+...++..|.++
T Consensus 123 -----------dl~~-Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -----------DLAT-LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHhh-HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1111 11222333 25899999999875432 222211 1344455566666554
No 309
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.31 E-value=0.75 Score=52.95 Aligned_cols=194 Identities=16% Similarity=0.216 Sum_probs=115.7
Q ss_pred ccchHHHHHHHHHHHh----c-CCCcEEEEECCCCCcHHHHHHHHHHHhcc---cCCCceE--EEEEeCCCCCHHHHHHH
Q 045843 162 VPSLNKHLKMLQECLR----N-VGTKRICIWGPPGVGKTTIMENLHDAIGE---SRQFDFI--FWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L~----~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~---~~~F~~~--~wv~vs~~~~~~~i~~~ 231 (913)
+-+|+.+..+|-+++. + ..-+.+-|.|.+|.|||..+..|.+.... ++.-... +.|..-.-....++...
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEK 477 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHH
Confidence 4589999999988873 3 23348899999999999999999986542 2222222 33333344578999999
Q ss_pred HHHHccCCccCCChHHHHHHHHHHHc-----cCCeEEEEeCCCCccc-----cccc-cCCCCCCCceEEEEeech-----
Q 045843 232 LLKRLDLRAEDHNIDQRADMISEELK-----DKSYVLFLDEVSTEIN-----LRDI-GIHDEHKNGKVVFACIFR----- 295 (913)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~~~-----~~~~-~~~~~~~~s~iivTTR~~----- 295 (913)
|..++.+.... -......|..++. .+..+|++|+++..-. +-.+ -. ...++||++|-+=..
T Consensus 478 I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdW-pt~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 478 IWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDW-PTLKNSKLVVIAIANTMDLP 554 (767)
T ss_pred HHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcC-CcCCCCceEEEEecccccCH
Confidence 99999776533 2233444444443 4578999999765211 1111 11 344567765544321
Q ss_pred ------hhhhc-CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCcHHHHHHHHHHh
Q 045843 296 ------NICGQ-IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGMPHMIKLIGSSL 358 (913)
Q Consensus 296 ------~v~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l 358 (913)
.|+.. ....+...+.++++-.+....+..+. .-...-.+-+++.|+.-.|-.-.|..+.-++.
T Consensus 555 Er~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 555 ERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred HHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11222 34567778888888777777766544 11223344455556555555555555544443
No 310
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.31 E-value=0.21 Score=57.29 Aligned_cols=54 Identities=26% Similarity=0.529 Sum_probs=41.8
Q ss_pred cccchHHHHHHHHHHHhc-----CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE
Q 045843 161 EVPSLNKHLKMLQECLRN-----VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT 218 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~ 218 (913)
+++--.+.++++..||.+ ...+++.+.|++|+||||.++.+++... |+..-|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 444556778888889843 2356999999999999999999998864 66666754
No 311
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.15 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|.|||||.+.+....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998653
No 312
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.29 E-value=0.075 Score=51.96 Aligned_cols=24 Identities=38% Similarity=0.387 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
++.++|++|+||||++..+.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987765
No 313
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.29 E-value=0.061 Score=65.31 Aligned_cols=101 Identities=17% Similarity=0.320 Sum_probs=59.2
Q ss_pred cccchHHHHHHHHHHHhc-------C--CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLRN-------V--GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
.++|.+..++.+.+.+.. + ...++.++|+.|+|||+||+.++.... ...+.+..++..+...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~---- 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHT---- 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhccc----
Confidence 467888888888887742 1 234688999999999999999988663 2345555554322111
Q ss_pred HHHHccCCccCCChHHHHHHHHHHHccCC-eEEEEeCCCCc
Q 045843 232 LLKRLDLRAEDHNIDQRADMISEELKDKS-YVLFLDEVSTE 271 (913)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~ 271 (913)
+.+-++........+ ....+.+.++.++ -+|+||+++..
T Consensus 526 ~~~lig~~~gyvg~~-~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPGYVGFE-QGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCCCcccc-hhhHHHHHHHhCCCeEEEEechhhc
Confidence 111122211111111 1223444554444 49999999864
No 314
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.29 E-value=0.43 Score=51.60 Aligned_cols=81 Identities=7% Similarity=-0.030 Sum_probs=46.2
Q ss_pred cCCeEEEEeCCCCcccc--c----cccCCCCCCCceEEEEeechh-hhhc---CCceEEcccCChHHHHHHHHHHhCCCC
Q 045843 258 DKSYVLFLDEVSTEINL--R----DIGIHDEHKNGKVVFACIFRN-ICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQL 327 (913)
Q Consensus 258 ~kr~LlVlDdv~~~~~~--~----~~~~~~~~~~s~iivTTR~~~-v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 327 (913)
+++-++|+|++...+.- . .+.-| ..++.+|++|.+.. +..- ....+.+.+++.+++.+.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep--~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~--- 186 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEP--PPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGV--- 186 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhC--cCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCC---
Confidence 45556666777764321 1 11112 23465666776644 3322 567889999999999888865411
Q ss_pred CCCCChHHHHHHHHHHhCCcHHH
Q 045843 328 KDCRDIKPVARLIINECGGMPHM 350 (913)
Q Consensus 328 ~~~~~~~~~~~~I~~~c~GlPla 350 (913)
+... ..+..++|-|+.
T Consensus 187 ---~~~~----~~l~~~~g~p~~ 202 (325)
T PRK08699 187 ---AEPE----ERLAFHSGAPLF 202 (325)
T ss_pred ---CcHH----HHHHHhCCChhh
Confidence 1111 113568898954
No 315
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.28 E-value=0.32 Score=51.89 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=54.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc------CCChHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE------DHNIDQRADMISE 254 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 254 (913)
-+++-|+|+.|+||||||-.+..... +.-..++||.....++... +++++...+ ....++......+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q--~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQ--KQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhh--cccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHH
Confidence 46899999999999999999887765 4456789999988777644 444554432 2345556666666
Q ss_pred HHcc-CCeEEEEeCCCCc
Q 045843 255 ELKD-KSYVLFLDEVSTE 271 (913)
Q Consensus 255 ~l~~-kr~LlVlDdv~~~ 271 (913)
.++. .--++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 6654 4458899988753
No 316
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.44 Score=52.12 Aligned_cols=145 Identities=14% Similarity=0.251 Sum_probs=78.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHc--cCC
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELK--DKS 260 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~--~kr 260 (913)
---++||+|.|||++..++++... |+..- ...+...+-.+ |++.|. ..+
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d------------------------Lr~LL~~t~~k 287 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD------------------------LRHLLLATPNK 287 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH------------------------HHHHHHhCCCC
Confidence 457899999999999999998875 43221 11222111111 233332 345
Q ss_pred eEEEEeCCCCcccc-----------cc----c---cC---CCC----CCCce-EEEEeechhhhhc-------CCceEEc
Q 045843 261 YVLFLDEVSTEINL-----------RD----I---GI---HDE----HKNGK-VVFACIFRNICGQ-------IDEEVNV 307 (913)
Q Consensus 261 ~LlVlDdv~~~~~~-----------~~----~---~~---~~~----~~~s~-iivTTR~~~v~~~-------~~~~~~l 307 (913)
-+||+.|++...+. +. + ++ .++ ..+-| ||+||...+-... .+..+.|
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 67777777653221 10 1 00 011 11234 5566665432221 5567889
Q ss_pred ccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHH-HhhcC
Q 045843 308 QRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGS-SLANV 361 (913)
Q Consensus 308 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~-~l~~~ 361 (913)
+--+.+....||......+. -..++.+|.+.-.|.-+.=.-++. +|..+
T Consensus 368 gyCtf~~fK~La~nYL~~~~-----~h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE-----DHRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC-----CcchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 99999999999999887642 123555555544555443344444 44443
No 317
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.25 E-value=0.11 Score=52.71 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|.|||||++.+....
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3589999999999999999997653
No 318
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.24 E-value=0.051 Score=53.70 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
||.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999987764
No 319
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.24 E-value=0.061 Score=58.82 Aligned_cols=73 Identities=25% Similarity=0.327 Sum_probs=48.4
Q ss_pred cccchHHHHHHHHHHHhcC--------------CCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---ceEEEEEeC-CC
Q 045843 161 EVPSLNKHLKMLQECLRNV--------------GTKRICIWGPPGVGKTTIMENLHDAIGESRQF---DFIFWVTVN-SE 222 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~~--------------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~~ 222 (913)
+++|.++.++.+.-.+... ..+.|.++|++|+|||++|+.+..... ..| +...+...+ ..
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~--~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC--CeEEEeecceeecCCccc
Confidence 4678888888876555321 236889999999999999999998876 334 222233222 22
Q ss_pred CCHHHHHHHHHHH
Q 045843 223 GNIRDIQEVLLKR 235 (913)
Q Consensus 223 ~~~~~i~~~i~~~ 235 (913)
.+.+.+.+.+...
T Consensus 91 ~dvE~i~r~l~e~ 103 (441)
T TIGR00390 91 RDVESMVRDLTDA 103 (441)
T ss_pred CCHHHHHHHHHHH
Confidence 3666666666554
No 320
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.22 E-value=0.11 Score=54.33 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=68.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccC-C--Cc---eEEEEEeCCCC------CHH-----------HHHHHHHHHc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESR-Q--FD---FIFWVTVNSEG------NIR-----------DIQEVLLKRL 236 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~--F~---~~~wv~vs~~~------~~~-----------~i~~~i~~~l 236 (913)
.-.+++|+|+.|.|||||++.++....... . ++ .+.++.-.... ++. +-...+++.+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRV 108 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHc
Confidence 345899999999999999999986543211 0 11 12222211000 111 1123334444
Q ss_pred cCCc------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccccc-----CC--CCCCCceEEEEeechhhhhc-C
Q 045843 237 DLRA------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDIG-----IH--DEHKNGKVVFACIFRNICGQ-I 301 (913)
Q Consensus 237 ~~~~------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~-----~~--~~~~~s~iivTTR~~~v~~~-~ 301 (913)
+... .. +.-+...-.+...+-.++-++++|+.....|..... +. ....|..||++|.+...... .
T Consensus 109 gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~ 188 (251)
T PRK09544 109 QAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKT 188 (251)
T ss_pred CChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 4322 01 122333334556666788899999998765533210 11 12236678888887766544 5
Q ss_pred CceEEcc
Q 045843 302 DEEVNVQ 308 (913)
Q Consensus 302 ~~~~~l~ 308 (913)
+.++.+.
T Consensus 189 d~i~~l~ 195 (251)
T PRK09544 189 DEVLCLN 195 (251)
T ss_pred CEEEEEC
Confidence 5555543
No 321
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.2 Score=54.40 Aligned_cols=88 Identities=14% Similarity=0.231 Sum_probs=47.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC--HHHHHHHHHHHccCCccC-CChHHHHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN--IRDIQEVLLKRLDLRAED-HNIDQRADMISEEL 256 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~l 256 (913)
+.++|+++|++|+||||++..++.... ...+ .+..+.. +.+. ..+-++.-.+.++..... .+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~a-Dt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITT-DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEec-CCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 347999999999999999999987664 1222 2333443 2332 222233344444444321 34444444444332
Q ss_pred cc-CCeEEEEeCCCC
Q 045843 257 KD-KSYVLFLDEVST 270 (913)
Q Consensus 257 ~~-kr~LlVlDdv~~ 270 (913)
.. +.=+|++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 21 234677777644
No 322
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.08 E-value=0.089 Score=60.39 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHccCCeEEEEeCCCCccccccccCC----CCCCCceEEEEeechhhhhc-CCceEEccc
Q 045843 246 DQRADMISEELKDKSYVLFLDEVSTEINLRDIGIH----DEHKNGKVVFACIFRNICGQ-IDEEVNVQR 309 (913)
Q Consensus 246 ~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~----~~~~~s~iivTTR~~~v~~~-~~~~~~l~~ 309 (913)
....-.|.+.|-.++=+|+||+-.+..|.+.+..- ..-+| .+||.|.++.--.. +..+++++.
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecC
Confidence 44455677778888999999999998775554321 34455 78999998876555 445555443
No 323
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.08 E-value=0.15 Score=53.29 Aligned_cols=59 Identities=15% Similarity=0.027 Sum_probs=35.7
Q ss_pred HHHHHHHccCCeEEEEeCCCCcccccccc-----CC--CCCCCceEEEEeechhhhhc-CCceEEcc
Q 045843 250 DMISEELKDKSYVLFLDEVSTEINLRDIG-----IH--DEHKNGKVVFACIFRNICGQ-IDEEVNVQ 308 (913)
Q Consensus 250 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~-----~~--~~~~~s~iivTTR~~~v~~~-~~~~~~l~ 308 (913)
-.+...+-.++-+|+||+.....|..... +. ....|..||++|.+...... ++.++.+.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~ 203 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLS 203 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 34455566778899999988764432110 00 12236778888888766544 55555553
No 324
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.06 E-value=0.18 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|+|||||++.+....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 325
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.06 E-value=0.18 Score=52.80 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=67.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhccc-CC--Cc---------eEEEEEeCCC----CCHH------------HHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGES-RQ--FD---------FIFWVTVNSE----GNIR------------DIQEVL 232 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~--F~---------~~~wv~vs~~----~~~~------------~i~~~i 232 (913)
-.+++|+|+.|+|||||++.+..-.... +. |+ .+.|+.-... .++. .-...+
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 117 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA 117 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHH
Confidence 3589999999999999999998654211 10 11 1222221110 1111 112334
Q ss_pred HHHccCCcc------C-CChHHHHHHHHHHHccCCeEEEEeCCCCccccccc------cCC-CCCCCceEEEEeechhhh
Q 045843 233 LKRLDLRAE------D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDI------GIH-DEHKNGKVVFACIFRNIC 298 (913)
Q Consensus 233 ~~~l~~~~~------~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~------~~~-~~~~~s~iivTTR~~~v~ 298 (913)
++.++.... . +.-+...-.+...+-.++-+++||+.....|-... ... ....|..||++|.+....
T Consensus 118 l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~ 197 (257)
T PRK11247 118 LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEA 197 (257)
T ss_pred HHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 444444220 1 12233333455566677889999998876443211 000 123466788888887654
Q ss_pred hc-CCceEEc
Q 045843 299 GQ-IDEEVNV 307 (913)
Q Consensus 299 ~~-~~~~~~l 307 (913)
.. ++.++.+
T Consensus 198 ~~~~d~i~~l 207 (257)
T PRK11247 198 VAMADRVLLI 207 (257)
T ss_pred HHhCCEEEEE
Confidence 33 4444444
No 326
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.05 E-value=0.069 Score=53.81 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=69.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhccc----------------------CCCceEEEEEeCCCC------------CHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGES----------------------RQFDFIFWVTVNSEG------------NIR 226 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~----------------------~~F~~~~wv~vs~~~------------~~~ 226 (913)
--.|+|+|++|+|||||.+.+..-.... +++..--|-+|-++- ...
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~ 108 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEAR 108 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHH
Confidence 3589999999999999999997432210 111122354444331 123
Q ss_pred HHHHHHHHHccCCcc-----C--CChHHHHHHHHHHHccCCeEEEEeCCCCccc------cc-cccCCCCCCCceEEEEe
Q 045843 227 DIQEVLLKRLDLRAE-----D--HNIDQRADMISEELKDKSYVLFLDEVSTEIN------LR-DIGIHDEHKNGKVVFAC 292 (913)
Q Consensus 227 ~i~~~i~~~l~~~~~-----~--~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~-~~~~~~~~~~s~iivTT 292 (913)
+...++++.++...- . +.-....-.+.+.|-.++-+|.+|+--...| .. .+.-.....+..||+.|
T Consensus 109 ~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVT 188 (248)
T COG1116 109 ERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVT 188 (248)
T ss_pred HHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 456667777766431 1 2223333456677778888999999765422 11 11111233456666666
Q ss_pred echhhhhc-CCceEEc
Q 045843 293 IFRNICGQ-IDEEVNV 307 (913)
Q Consensus 293 R~~~v~~~-~~~~~~l 307 (913)
.+-+-|-. .+.++-|
T Consensus 189 Hdi~EAv~LsdRivvl 204 (248)
T COG1116 189 HDVDEAVYLADRVVVL 204 (248)
T ss_pred CCHHHHHhhhCEEEEe
Confidence 66544433 3333333
No 327
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.04 E-value=0.11 Score=54.20 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=58.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc--cCCChH---HHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA--EDHNID---QRADMISE 254 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~--~~~~~~---~~~~~l~~ 254 (913)
.-+++=|+|+.|.||||+|.+++-... ..-..++|+..-..++++.+..--...+..-. ...+.+ +.++.+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 345888999999999999999887765 44458899999999998876543333122111 112222 23344444
Q ss_pred HHccCCeEEEEeCCCCc
Q 045843 255 ELKDKSYVLFLDEVSTE 271 (913)
Q Consensus 255 ~l~~kr~LlVlDdv~~~ 271 (913)
....+--|+|+|-|-..
T Consensus 137 ~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 137 SGAEKIDLLVVDSVAAL 153 (279)
T ss_pred hccCCCCEEEEecCccc
Confidence 44445679999997653
No 328
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.045 Score=53.38 Aligned_cols=24 Identities=50% Similarity=0.966 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|.|+|++|.||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998854
No 329
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.04 E-value=0.022 Score=53.73 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=27.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT 218 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~ 218 (913)
.+|.|.|.+|+||||||+.+.+... ..-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEec
Confidence 5899999999999999999999887 3334455543
No 330
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.03 E-value=0.17 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|..|.|||||++.+..-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999998653
No 331
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.02 E-value=0.0097 Score=60.60 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=83.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc---C-CChHHHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE---D-HNIDQRADMISEE 255 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~---~-~~~~~~~~~l~~~ 255 (913)
+.+++.|.|+.|.||||+.+.+.--.-. +..-.+|..... ...+...|+..++.... + +........+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLM---AQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHH---HHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 4568999999999999999887632110 000112221110 00112233333332211 1 2233333344444
Q ss_pred H--ccCCeEEEEeCC---CCccccccc-----cCCCCCCCceEEEEeechhhhhcCC-----ceEEcccCChH--HHHHH
Q 045843 256 L--KDKSYVLFLDEV---STEINLRDI-----GIHDEHKNGKVVFACIFRNICGQID-----EEVNVQRLSGK--DAQKL 318 (913)
Q Consensus 256 l--~~kr~LlVlDdv---~~~~~~~~~-----~~~~~~~~s~iivTTR~~~v~~~~~-----~~~~l~~L~~~--~~~~L 318 (913)
+ -+++-|+++|+. .+..+-..+ ..-....|+.+|+||....+..... ...++.....+ +.. .
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~-~ 182 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL-T 182 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE-e
Confidence 4 367899999999 443332111 1001235788999999766654311 11222221111 111 1
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhc
Q 045843 319 FWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLAN 360 (913)
Q Consensus 319 f~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~ 360 (913)
|..+.... . .-...|-++++++ |+|-.+.--|..+..
T Consensus 183 ~~Y~l~~G---~-~~~s~a~~~a~~~-g~p~~vi~~A~~~~~ 219 (222)
T cd03285 183 MLYKVEKG---A-CDQSFGIHVAELA-NFPKEVIEMAKQKAL 219 (222)
T ss_pred EEEEEeeC---C-CCCcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 11111111 1 1134677888877 899888877776654
No 332
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.02 E-value=0.18 Score=51.57 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|..|.|||||++.++...
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 333
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.01 E-value=0.058 Score=59.37 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=19.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHD 203 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~ 203 (913)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999998753
No 334
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.97 E-value=0.062 Score=56.59 Aligned_cols=134 Identities=15% Similarity=0.161 Sum_probs=73.7
Q ss_pred ccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHH-hcccCCCceEEE----EEeCCCCC---------HHH
Q 045843 162 VPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDA-IGESRQFDFIFW----VTVNSEGN---------IRD 227 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~-~~~~~~F~~~~w----v~vs~~~~---------~~~ 227 (913)
+-+|..+..--+++|.++.+..|.+.|..|.|||-||-+..=. .-.++.|...+- +.+.++.. +.-
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 3457777777888999999999999999999999888654321 122344543321 23443310 111
Q ss_pred HHHHHHHHc---cCCccCCChHHHHHHH----------HHHHccC---CeEEEEeCCCCccccccc-cCCCCCCCceEEE
Q 045843 228 IQEVLLKRL---DLRAEDHNIDQRADMI----------SEELKDK---SYVLFLDEVSTEINLRDI-GIHDEHKNGKVVF 290 (913)
Q Consensus 228 i~~~i~~~l---~~~~~~~~~~~~~~~l----------~~~l~~k---r~LlVlDdv~~~~~~~~~-~~~~~~~~s~iiv 290 (913)
-.+.|.+.+ ...... . +.....+ -.+++|+ .-+||+|+..+-..-+-- .+.-.+.|||||.
T Consensus 306 Wmq~i~DnLE~L~~~~~~-~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~GsKIVl 383 (436)
T COG1875 306 WMQAIFDNLEVLFSPNEP-G-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGSKIVL 383 (436)
T ss_pred hHHHHHhHHHHHhccccc-c-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCCEEEE
Confidence 123333322 111111 1 1111111 1223444 358999999885432211 1225678999998
Q ss_pred Eeechhh
Q 045843 291 ACIFRNI 297 (913)
Q Consensus 291 TTR~~~v 297 (913)
|---.++
T Consensus 384 ~gd~aQi 390 (436)
T COG1875 384 TGDPAQI 390 (436)
T ss_pred cCCHHHc
Confidence 8754443
No 335
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.96 E-value=0.16 Score=52.50 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=35.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 232 (913)
.-.++.|.|.+|+|||++|.++....- +.-+.++||+..+ +...+.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC--CHHHHHHHH
Confidence 346999999999999999998765442 3356788888766 455555543
No 336
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.085 Score=57.99 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
..++.++|++|+||||++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 337
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.96 E-value=0.088 Score=55.07 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc--------c
Q 045843 170 KMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA--------E 241 (913)
Q Consensus 170 ~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~--------~ 241 (913)
++..+++.+.+..++.|+|.+|.|||||+..+.+... ..... +.+ ..+..+..+. ..+...+... .
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~--~~~~~-~VI-~gD~~t~~Da--~rI~~~g~pvvqi~tG~~C 166 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK--DSVPC-AVI-EGDQQTVNDA--ARIRATGTPAIQVNTGKGC 166 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc--cCCCE-EEE-CCCcCcHHHH--HHHHhcCCcEEEecCCCCC
Confidence 3445555677889999999999999999999998865 33322 222 2222222221 1233333221 1
Q ss_pred CCChHHHHHHHHHHHccCCeEEEEeCCCC
Q 045843 242 DHNIDQRADMISEELKDKSYVLFLDEVST 270 (913)
Q Consensus 242 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 270 (913)
..+...+...+...-....=+||+++|-+
T Consensus 167 hl~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 167 HLDAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cCcHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 12223344444444334446778899875
No 338
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.93 E-value=0.18 Score=51.68 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=65.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhccc-CC--Cc---------eEEEEEeCCC------CCHHH--------------H
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGES-RQ--FD---------FIFWVTVNSE------GNIRD--------------I 228 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~--F~---------~~~wv~vs~~------~~~~~--------------i 228 (913)
-.+++|+|+.|.|||||.+.+....... +. ++ ..+.+ +.+. .++.+ -
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~-~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~ 104 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGS-LIESPPLYENLTARENLKVHTTLLGLPDSR 104 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEE-EcCCCCccccCCHHHHHHHHHHHcCCCHHH
Confidence 3589999999999999999998653211 10 00 01111 1111 11111 1
Q ss_pred HHHHHHHccCCcc------C-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc---c---cCCCCCCCceEEEEeech
Q 045843 229 QEVLLKRLDLRAE------D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD---I---GIHDEHKNGKVVFACIFR 295 (913)
Q Consensus 229 ~~~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~---~---~~~~~~~~s~iivTTR~~ 295 (913)
..++++.++.... . +.-+...-.+...+-.++-++++|+.....|-.. + .......|..||++|.+.
T Consensus 105 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~ 184 (223)
T TIGR03740 105 IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL 184 (223)
T ss_pred HHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 1233344433210 0 1122223344555667789999999887654321 1 111123466788998887
Q ss_pred hhhhc-CCceEEc
Q 045843 296 NICGQ-IDEEVNV 307 (913)
Q Consensus 296 ~v~~~-~~~~~~l 307 (913)
..... ++.++.+
T Consensus 185 ~~~~~~~d~i~~l 197 (223)
T TIGR03740 185 SEVQQLADHIGII 197 (223)
T ss_pred HHHHHhcCEEEEE
Confidence 76544 4444444
No 339
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.93 E-value=0.012 Score=59.12 Aligned_cols=82 Identities=26% Similarity=0.336 Sum_probs=46.7
Q ss_pred CCCceeEEeeccCccccCchHHHhcCCcccEEeccCC--ccc-ccCccccCccCcceeecCCccCccc---cChhhhccc
Q 045843 526 KCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDT--KIK-LLPSSISSLTNLKALFLNNCCQLMR---LPAEVGDLH 599 (913)
Q Consensus 526 ~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~--~i~-~lp~~i~~L~~L~~L~L~~c~~l~~---lP~~i~~L~ 599 (913)
.+..|..|.+.+..++.+.. |..+++|+.|+++.| .+. .++-...++++|++|+|++ +.++. ++ .+..+.
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~-pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLR-PLKELE 116 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccc-hhhhhc
Confidence 34455555555554443332 455667777777777 333 4544455557777777777 44443 22 245566
Q ss_pred cCCEEecCCCcC
Q 045843 600 NLEILDLSHTGI 611 (913)
Q Consensus 600 ~L~~L~L~~~~~ 611 (913)
+|..||+.+|..
T Consensus 117 nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 117 NLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcccCCc
Confidence 666777766655
No 340
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.42 Score=47.57 Aligned_cols=48 Identities=19% Similarity=0.452 Sum_probs=36.3
Q ss_pred cccccchHHHHHHHHHHHh-------------cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 159 MEEVPSLNKHLKMLQECLR-------------NVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..++-|.+-...++.+... -+..+-|.++|++|+|||.||++|+++..
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 3345577777777766652 13456788999999999999999998876
No 341
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.13 Score=53.10 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999997654
No 342
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.91 E-value=0.083 Score=54.09 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=66.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEE------------eCCCCCHHH------------------HHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVT------------VNSEGNIRD------------------IQE 230 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~------------vs~~~~~~~------------------i~~ 230 (913)
-.+++|+|+.|+|||||++.+...... ....+|+. .....++.+ ...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 124 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKID 124 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 358999999999999999999865431 11222211 001111111 112
Q ss_pred HHHHHccCCc------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCccccccc------cCCCCCCCceEEEEeechhh
Q 045843 231 VLLKRLDLRA------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDI------GIHDEHKNGKVVFACIFRNI 297 (913)
Q Consensus 231 ~i~~~l~~~~------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~------~~~~~~~~s~iivTTR~~~v 297 (913)
++++.++... .. +.-+...-.+...+-.++-++++|+.....|.... .......|..||++|.+...
T Consensus 125 ~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~ 204 (224)
T cd03220 125 EIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS 204 (224)
T ss_pred HHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 2333333221 01 12233333456667778899999998876553311 11112236678888888765
Q ss_pred hhc-CCceEEc
Q 045843 298 CGQ-IDEEVNV 307 (913)
Q Consensus 298 ~~~-~~~~~~l 307 (913)
+.. .+.++.+
T Consensus 205 ~~~~~d~i~~l 215 (224)
T cd03220 205 IKRLCDRALVL 215 (224)
T ss_pred HHHhCCEEEEE
Confidence 544 4444443
No 343
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.91 E-value=0.094 Score=51.75 Aligned_cols=120 Identities=16% Similarity=0.047 Sum_probs=62.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC--CCHH-----------------------HHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE--GNIR-----------------------DIQEVLLKR 235 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~-----------------------~i~~~i~~~ 235 (913)
-.+++|+|..|.|||||++.+..-... ....+++.-.+- .+.. .+.+.+.-.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH
Confidence 358999999999999999999865432 122333221000 0000 111111000
Q ss_pred ccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcccccc---c---cCCCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 236 LDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEINLRD---I---GIHDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 236 l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~---~---~~~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
.. -+.-+...-.+...+-.++-++++|+.....|... + .......|..||++|.+...... +++++.+
T Consensus 103 ~~----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l 177 (182)
T cd03215 103 SL----LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVM 177 (182)
T ss_pred hh----cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence 00 01111222245566667889999999887654332 1 01112236788888888654443 4555444
No 344
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.89 E-value=0.16 Score=59.66 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=37.0
Q ss_pred HHHHHHHHHccCCeEEEEeCCCCccccccccC---CCCCCCceEEEEeechhhhhc-CCceEEcc
Q 045843 248 RADMISEELKDKSYVLFLDEVSTEINLRDIGI---HDEHKNGKVVFACIFRNICGQ-IDEEVNVQ 308 (913)
Q Consensus 248 ~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~---~~~~~~s~iivTTR~~~v~~~-~~~~~~l~ 308 (913)
..-.+...+-.++-+|+||+..+..|...... .-...|..||++|.+...... ++.++.++
T Consensus 162 qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~ 226 (530)
T PRK15064 162 LRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLD 226 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEe
Confidence 33445566667888999999988655332110 011246678888888776554 55555543
No 345
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.88 E-value=0.089 Score=49.90 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988764
No 346
>PRK07667 uridine kinase; Provisional
Probab=94.88 E-value=0.037 Score=55.11 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=29.7
Q ss_pred HHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 169 LKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 169 ~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.++|.+.+.. .+..+|+|-|.+|+||||+|+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3556666633 3446999999999999999999998775
No 347
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.86 E-value=0.11 Score=51.90 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcc
Q 045843 171 MLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGE 207 (913)
Q Consensus 171 ~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 207 (913)
+.+..+..++-+++.|.|++|.||||+++.+......
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~ 44 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA 44 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 3344444455578999999999999999998876663
No 348
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.85 E-value=0.026 Score=45.40 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 045843 183 RICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 349
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.84 E-value=0.03 Score=67.57 Aligned_cols=183 Identities=14% Similarity=0.135 Sum_probs=91.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh-cccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc----cCCChHHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI-GESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA----EDHNIDQRADMISE 254 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~----~~~~~~~~~~~l~~ 254 (913)
+..++.|.|+.|.||||+.+.+.... .... ..+|.+..... -.....+...++... .-.....-...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~----G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQS----GIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHh----CCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 44799999999999999999987552 1111 11222211100 001111111111110 00111222222333
Q ss_pred HHc--cCCeEEEEeCCCCcccccc---cc--CC--CCCCCceEEEEeechhhhhc---CCc--eEEcccCChHHHHHHHH
Q 045843 255 ELK--DKSYVLFLDEVSTEINLRD---IG--IH--DEHKNGKVVFACIFRNICGQ---IDE--EVNVQRLSGKDAQKLFW 320 (913)
Q Consensus 255 ~l~--~kr~LlVlDdv~~~~~~~~---~~--~~--~~~~~s~iivTTR~~~v~~~---~~~--~~~l~~L~~~~~~~Lf~ 320 (913)
.+. +.+-|+++|+.-...+... +. +. ....|+.+|+||....+... ... ...+. ++. +... |.
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~ 472 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PT 472 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eE
Confidence 333 4789999999987544221 11 00 22468899999999876433 111 11111 111 1000 00
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHHHHhhcC
Q 045843 321 ETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDMLSQLRS 376 (913)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~ 376 (913)
.+... ..+. ...|-+|++++ |+|-.|.--|..+.+. ...+.+.++..+..
T Consensus 473 Ykl~~---G~~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~L~~ 522 (771)
T TIGR01069 473 YKLLK---GIPG-ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEKLSA 522 (771)
T ss_pred EEECC---CCCC-CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 11111 1111 34688888887 7888888888777655 45567777766543
No 350
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.84 E-value=0.13 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+|+|.|..|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 351
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.84 E-value=0.023 Score=56.80 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
||+|.|++|+||||+|+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998886
No 352
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.12 Score=59.53 Aligned_cols=92 Identities=16% Similarity=0.390 Sum_probs=59.5
Q ss_pred cccchHHHHHHHHHHHh---------cC---CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHH
Q 045843 161 EVPSLNKHLKMLQECLR---------NV---GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDI 228 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~---------~~---~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i 228 (913)
++=|.++.+.+|.+-+. .. +.+-|-++|++|.|||-||++|+.... ..|+.|-.. ++
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP----EL 741 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP----EL 741 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH----HH
Confidence 45588888888887662 12 245788999999999999999998876 345555432 11
Q ss_pred HHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCc
Q 045843 229 QEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTE 271 (913)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 271 (913)
+.. .+| .+++...+...+.=..++++|.||++++.
T Consensus 742 LNM---YVG-----qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 742 LNM---YVG-----QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHH---Hhc-----chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 111 111 22333333333333468999999999873
No 353
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.83 E-value=0.089 Score=58.64 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHHHHhc-------C---------CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 161 EVPSLNKHLKMLQECLRN-------V---------GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.++|.+..++.+...+.+ . ..+.+.++|++|+|||++|+.+.....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 468999988877554411 0 235789999999999999999987664
No 354
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.83 E-value=0.039 Score=51.26 Aligned_cols=28 Identities=39% Similarity=0.666 Sum_probs=24.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhccc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGES 208 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 208 (913)
...|+|.|++|+||||+++.+.+..+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 3578999999999999999999888743
No 355
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.81 E-value=0.21 Score=53.25 Aligned_cols=119 Identities=17% Similarity=0.211 Sum_probs=67.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccC-C---C------------ceEEEEEeCCC----CCH----------------
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESR-Q---F------------DFIFWVTVNSE----GNI---------------- 225 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~---F------------~~~~wv~vs~~----~~~---------------- 225 (913)
.++++.|+.|.|||||.+.+....+... . + ..+.++.-... .++
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~ 111 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE 111 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence 5899999999999999999987654210 0 0 01222221111 111
Q ss_pred --HHHHHHHHHHccCCccC-------CChHHHHHHHHHHHccCCeEEEEeCCCCccc-------cccccCCCCCCCceEE
Q 045843 226 --RDIQEVLLKRLDLRAED-------HNIDQRADMISEELKDKSYVLFLDEVSTEIN-------LRDIGIHDEHKNGKVV 289 (913)
Q Consensus 226 --~~i~~~i~~~l~~~~~~-------~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~~~~~~~~~~~~s~ii 289 (913)
.+....+++.++..... +.-+...-.+...|-+++-+++||+-.+..| |+.+..-....+..|+
T Consensus 112 ~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvl 191 (293)
T COG1131 112 EAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTIL 191 (293)
T ss_pred HHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEE
Confidence 12334555555554311 1223333445666778899999999887543 2222111233337899
Q ss_pred EEeechhhhhc
Q 045843 290 FACIFRNICGQ 300 (913)
Q Consensus 290 vTTR~~~v~~~ 300 (913)
+||..-..+..
T Consensus 192 issH~l~e~~~ 202 (293)
T COG1131 192 LSTHILEEAEE 202 (293)
T ss_pred EeCCcHHHHHH
Confidence 99987665444
No 356
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.81 E-value=0.15 Score=55.33 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=56.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCC----CceEEEEEeCCCCCHHHHHHHHHHHccCCccC----------CC-
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQ----FDFIFWVTVNSEGNIRDIQEVLLKRLDLRAED----------HN- 244 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------~~- 244 (913)
.-.++-|+|++|+|||+++.+++-....... =..++||+....|+..++.+ +++.++...+. .+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCH
Confidence 3568899999999999999999866532211 14789999988888877654 34444432110 11
Q ss_pred --hHHHHHHHHHHHcc--CCeEEEEeCCCC
Q 045843 245 --IDQRADMISEELKD--KSYVLFLDEVST 270 (913)
Q Consensus 245 --~~~~~~~l~~~l~~--kr~LlVlDdv~~ 270 (913)
.......+...+.. +--|||+|-+-.
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 11223444455543 334888888654
No 357
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.79 E-value=0.034 Score=56.28 Aligned_cols=113 Identities=13% Similarity=0.206 Sum_probs=59.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc----CCChHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG--ESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----DHNIDQRADMISE 254 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----~~~~~~~~~~l~~ 254 (913)
.+++.|.|+.|.||||+.+.+..... ..+.|.....+.+. ...++...++.... .+....-..++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~-------~~d~i~~~l~~~~si~~~~S~f~~el~~l~~ 101 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIG-------LVDKIFTRMSSRESVSSGQSAFMIDLYQVSK 101 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEe-------eeeeeeeeeCCccChhhccchHHHHHHHHHH
Confidence 47899999999999999999874321 11222111000000 11122222222211 0222222333333
Q ss_pred HH--ccCCeEEEEeCCCCccccc---ccc--C----CCC-CCCceEEEEeechhhhhc
Q 045843 255 EL--KDKSYVLFLDEVSTEINLR---DIG--I----HDE-HKNGKVVFACIFRNICGQ 300 (913)
Q Consensus 255 ~l--~~kr~LlVlDdv~~~~~~~---~~~--~----~~~-~~~s~iivTTR~~~v~~~ 300 (913)
.+ ..++-|++||+.-...+.. .+. . ... ..+..+|+||.....+..
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 33 3688999999998754321 111 0 011 234589999998877654
No 358
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.16 Score=55.88 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=53.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccC--CCceEEEEEeCCCCCH--HHHHHHHHHHccCCccC-CChHHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESR--QFDFIFWVTVNSEGNI--RDIQEVLLKRLDLRAED-HNIDQRADMISE 254 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~ 254 (913)
...+|.++|+.|+||||.+..++....... +-..+..+++. ++.. ..-++...+.++..... ...+.+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 356999999999999999999887665321 12234444443 3333 23355666666654432 344444444443
Q ss_pred HHccCCeEEEEeCCCC
Q 045843 255 ELKDKSYVLFLDEVST 270 (913)
Q Consensus 255 ~l~~kr~LlVlDdv~~ 270 (913)
. .+.=+|++|..-.
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 4556888898754
No 359
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.78 E-value=0.15 Score=53.79 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=22.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
...-+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345699999999999999998876554
No 360
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.77 E-value=0.1 Score=51.18 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|+|++|+||||+|+.+.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999998774
No 361
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.75 E-value=0.13 Score=53.37 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=60.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcc--cCCCceEEEEEeCCCC-CHHHHHHHHHHHccCCc--------cCCCh-----
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGE--SRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLRA--------EDHNI----- 245 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~--------~~~~~----- 245 (913)
..++|+|..|+|||+|+..+.+.... +++-+.++++-+.+.. ++.++.+.+.+.=.... ++...
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 47899999999999999998877541 2335778888888764 56777777766422211 11111
Q ss_pred HHHHHHHHHHHc---cCCeEEEEeCCCCc
Q 045843 246 DQRADMISEELK---DKSYVLFLDEVSTE 271 (913)
Q Consensus 246 ~~~~~~l~~~l~---~kr~LlVlDdv~~~ 271 (913)
-...-.+.++++ +++.|+++||+...
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 112334566663 68999999998763
No 362
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.75 E-value=0.023 Score=52.25 Aligned_cols=22 Identities=50% Similarity=0.730 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh
Q 045843 184 ICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 184 i~I~G~gG~GKTtLa~~v~~~~ 205 (913)
|+|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998875
No 363
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.74 E-value=0.22 Score=51.41 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=55.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc------------------
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE------------------ 241 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------------------ 241 (913)
.-.++.|.|.+|+|||++|.++....- .+=..++|+...+. ...+.+.+ ++++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~--~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL--KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH--hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 456999999999999999999865543 23456888888664 45555543 23321110
Q ss_pred ---CCChHHHHHHHHHHHcc-CCeEEEEeCCC
Q 045843 242 ---DHNIDQRADMISEELKD-KSYVLFLDEVS 269 (913)
Q Consensus 242 ---~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 269 (913)
..+.+.....+.+.+.. +.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 12235566666666653 66689999976
No 364
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.73 E-value=0.2 Score=47.61 Aligned_cols=112 Identities=14% Similarity=0.050 Sum_probs=59.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC---CCCHHHHHHHHHHHc-----cCCc--cCCCh------
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS---EGNIRDIQEVLLKRL-----DLRA--EDHNI------ 245 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~i~~~i~~~l-----~~~~--~~~~~------ 245 (913)
..|-|++..|.||||+|....-+.- .+=..+.++..-+ ......+++.+ ..+ +... ...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678899999999999988776554 3322334433222 22333333333 111 1100 00111
Q ss_pred -HHHHHHHHHHHcc-CCeEEEEeCCCCccccc-----ccc--CCCCCCCceEEEEeechh
Q 045843 246 -DQRADMISEELKD-KSYVLFLDEVSTEINLR-----DIG--IHDEHKNGKVVFACIFRN 296 (913)
Q Consensus 246 -~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~-----~~~--~~~~~~~s~iivTTR~~~ 296 (913)
.......++.+.. +-=|||||++-....+. .+. +.....+..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122333444443 45599999987643322 221 114556779999999854
No 365
>PTZ00301 uridine kinase; Provisional
Probab=94.70 E-value=0.042 Score=55.19 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|+|.|.+|+||||+|+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987764
No 366
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.70 E-value=0.054 Score=65.07 Aligned_cols=101 Identities=19% Similarity=0.307 Sum_probs=58.7
Q ss_pred cccchHHHHHHHHHHHhc---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLRN---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
.++|.++.++.|.+.+.. .....+.++|+.|+|||++|+.+..... .. .+.+.+++..+.. .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~~---~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IE---LLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--CC---cEEeechhhcccc----c
Confidence 368999999998888741 1235788999999999999999988763 22 2344444432211 1
Q ss_pred HHHHccCCccCCChHHHHHHHHHHHccC-CeEEEEeCCCCc
Q 045843 232 LLKRLDLRAEDHNIDQRADMISEELKDK-SYVLFLDEVSTE 271 (913)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~ 271 (913)
+.+-++........ .....+.+.++.+ .-+|+||++...
T Consensus 530 ~~~LiG~~~gyvg~-~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVGF-DQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCcccc-cccchHHHHHHhCCCcEEEeccHhhh
Confidence 11122221110000 1112334444444 459999999874
No 367
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.69 E-value=0.094 Score=64.54 Aligned_cols=104 Identities=16% Similarity=0.288 Sum_probs=59.5
Q ss_pred cccchHHHHHHHHHHHhc-------CC--CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLRN-------VG--TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~-------~~--~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
.++|.+..++.+.+.+.. +. ...+.++|+.|+|||+||+.+.+..- ..-...+-+..++..+...+.
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~--~~~~~~~~~d~s~~~~~~~~~-- 585 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF--GSEDAMIRLDMSEYMEKHTVS-- 585 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCccceEEEEchhccccccHH--
Confidence 468999999999888732 11 23567999999999999999987653 111233444444432222211
Q ss_pred HHHHccCCccCCChHHHHHHHHHHHccCCe-EEEEeCCCCc
Q 045843 232 LLKRLDLRAEDHNIDQRADMISEELKDKSY-VLFLDEVSTE 271 (913)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~ 271 (913)
+-++....-...++ ...+.+.++.++| +++||++...
T Consensus 586 --~l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 586 --KLIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HhcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhC
Confidence 11221110001001 1234555665654 8889999864
No 368
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.69 E-value=0.27 Score=53.38 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
.++|+...+.++.+.+.. ..-.-|.|.|..|+||+++|+.++..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 467988888888877732 23346789999999999999999854
No 369
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.2 Score=50.16 Aligned_cols=48 Identities=23% Similarity=0.444 Sum_probs=36.5
Q ss_pred cccccchHHHHHHHHHHHh-------------cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 159 MEEVPSLNKHLKMLQECLR-------------NVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..++-|-.+.++++.+.+. -+..+-|.++|++|.|||-+|++|+|+..
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 3345577777887776652 12456788999999999999999998875
No 370
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.69 E-value=0.25 Score=53.23 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=36.0
Q ss_pred HHHHHHHHccCCeEEEEeCCCCccccc-------cccCCCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 249 ADMISEELKDKSYVLFLDEVSTEINLR-------DIGIHDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 249 ~~~l~~~l~~kr~LlVlDdv~~~~~~~-------~~~~~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
.-.+...+-.++-+|+||+.....|-. .+.- ....|..||+||.+...+.. ++.++.+
T Consensus 132 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~-~~~~g~tvi~~sH~~~~~~~~~d~v~~l 197 (302)
T TIGR01188 132 RLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA-LKEEGVTILLTTHYMEEADKLCDRIAII 197 (302)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH-HHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 344566666788999999988754422 1111 12347789999998766544 4444443
No 371
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.0066 Score=61.04 Aligned_cols=99 Identities=20% Similarity=0.193 Sum_probs=78.7
Q ss_pred hhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc--cccCccCcceeec
Q 045843 505 WEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS--SISSLTNLKALFL 582 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~--~i~~L~~L~~L~L 582 (913)
..+++.|.+.++.+..+.--.+++.|.+|.|+-|.++.+.+ |..|+.|+.|.|..|.|..+-+ -+.+|++|+.|-|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 45788888888888777666788999999999998888766 6899999999999999987754 3668899999999
Q ss_pred CCccCccccChh-----hhccccCCEEe
Q 045843 583 NNCCQLMRLPAE-----VGDLHNLEILD 605 (913)
Q Consensus 583 ~~c~~l~~lP~~-----i~~L~~L~~L~ 605 (913)
..|.....-+.. +.-|++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 886665555432 55677888776
No 372
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.67 E-value=0.1 Score=52.55 Aligned_cols=85 Identities=24% Similarity=0.394 Sum_probs=54.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-CCHHHHHHHHHHHccCCc-------cCCCh-H-----H
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE-GNIRDIQEVLLKRLDLRA-------EDHNI-D-----Q 247 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~-------~~~~~-~-----~ 247 (913)
..++|+|..|+|||+|+..+.+... -+..+++.+.+. .++.++.+++...-.... .++.. . .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4789999999999999999998874 344588888875 456666666644311111 11111 1 1
Q ss_pred HHHHHHHHH--ccCCeEEEEeCCCC
Q 045843 248 RADMISEEL--KDKSYVLFLDEVST 270 (913)
Q Consensus 248 ~~~~l~~~l--~~kr~LlVlDdv~~ 270 (913)
..-.+.+++ ++|..|+++||+..
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 112233444 58999999999854
No 373
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.67 E-value=0.043 Score=57.72 Aligned_cols=90 Identities=20% Similarity=0.444 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHH
Q 045843 169 LKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQR 248 (913)
Q Consensus 169 ~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~ 248 (913)
...+++.+...+. -+-++|+.|+|||++++.......- ..| ...-++.|...+...+++.|-..+...... ..
T Consensus 22 ~~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~-~~--- 94 (272)
T PF12775_consen 22 YSYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR-VY--- 94 (272)
T ss_dssp HHHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE-EE---
T ss_pred HHHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC-CC---
Confidence 3556666655543 5689999999999999998865431 111 234455665544444433222222111100 00
Q ss_pred HHHHHHHHccCCeEEEEeCCCC
Q 045843 249 ADMISEELKDKSYVLFLDEVST 270 (913)
Q Consensus 249 ~~~l~~~l~~kr~LlVlDdv~~ 270 (913)
.--.+|+.++.+||+.-
T Consensus 95 -----gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 95 -----GPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp -----EEESSSEEEEEEETTT-
T ss_pred -----CCCCCcEEEEEecccCC
Confidence 00126888999999864
No 374
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=6.3 Score=40.77 Aligned_cols=170 Identities=18% Similarity=0.285 Sum_probs=93.3
Q ss_pred ccCccccccchHHHHHHHHHHH----------hcC--CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC
Q 045843 155 HAKKMEEVPSLNKHLKMLQECL----------RNV--GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE 222 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~l~~~L----------~~~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (913)
|...-.++.|-+...+.|.+.+ ... ..+-|.++|++|.||+-||++|+.... .. |+.||..
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--ST-----FFSvSSS 200 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVSSS 200 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cc-----eEEeehH
Confidence 3344446678888888887765 122 356899999999999999999998765 32 3444442
Q ss_pred CCHHHHHHHHHHHccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCc---------cccccc---------cCCCCC
Q 045843 223 GNIRDIQEVLLKRLDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTE---------INLRDI---------GIHDEH 283 (913)
Q Consensus 223 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~~~---------~~~~~~ 283 (913)
++...- + ...+.+...|.+.- +.|+-+|.+|+|+.. +.-..| +..+..
T Consensus 201 ----DLvSKW---m------GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 201 ----DLVSKW---M------GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred ----HHHHHH---h------ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence 111111 1 12234444555444 368999999999752 111111 111344
Q ss_pred CCceEEEEeechhhhhc-----CCceEEcccCChHHHHH-HHHHHhCCCCCCCCChHHHHHHHHHHhCCc
Q 045843 284 KNGKVVFACIFRNICGQ-----IDEEVNVQRLSGKDAQK-LFWETVGVQLKDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 284 ~~s~iivTTR~~~v~~~-----~~~~~~l~~L~~~~~~~-Lf~~~~~~~~~~~~~~~~~~~~I~~~c~Gl 347 (913)
.|.-|+=.|...-+..+ ..+.|.+ ||.+..|.. .|+-+++.. .+.--+.-.+++.++..|.
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGY 334 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCC
Confidence 45555556665544443 2334443 566666654 454444432 1111223344555555443
No 375
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.66 E-value=0.072 Score=49.88 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=45.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc-cCCChHHHHHHHHHHHccCCeE
Q 045843 184 ICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA-EDHNIDQRADMISEELKDKSYV 262 (913)
Q Consensus 184 i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~-~~~~~~~~~~~l~~~l~~kr~L 262 (913)
|.++|++|+|||+||+.+++... ....-+.++...+..++....--.-+... .....-... .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--------~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--------RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--------HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeecccccccccccccccc--------cceeE
Confidence 67999999999999999998773 23344678887787776644322100000 001111000 17889
Q ss_pred EEEeCCCC
Q 045843 263 LFLDEVST 270 (913)
Q Consensus 263 lVlDdv~~ 270 (913)
+|||++..
T Consensus 69 l~lDEin~ 76 (139)
T PF07728_consen 69 LVLDEINR 76 (139)
T ss_dssp EEESSCGG
T ss_pred EEECCccc
Confidence 99999885
No 376
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.66 E-value=0.031 Score=56.60 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+..+|+|.|.+|+||||||+.+....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999999876
No 377
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.65 E-value=0.27 Score=57.69 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=38.4
Q ss_pred CccccccchHHHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 157 KKMEEVPSLNKHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.....++|....+.++++.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 3445678999999998887742 233456799999999999999998764
No 378
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.64 E-value=0.14 Score=56.89 Aligned_cols=87 Identities=23% Similarity=0.279 Sum_probs=51.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCC-----ccC-C-Ch-----HHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLR-----AED-H-NI-----DQRA 249 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----~~~-~-~~-----~~~~ 249 (913)
..++|+|..|+|||||++.+..... ....+++..--+..++.++....+...... .+. . .. -...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4899999999999999998875442 223444444334445655554444433111 111 1 11 1122
Q ss_pred HHHHHHH--ccCCeEEEEeCCCCc
Q 045843 250 DMISEEL--KDKSYVLFLDEVSTE 271 (913)
Q Consensus 250 ~~l~~~l--~~kr~LlVlDdv~~~ 271 (913)
-.+.+++ +++..|+++||+...
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHHH
Confidence 3345555 489999999998763
No 379
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.63 E-value=0.18 Score=60.43 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=36.2
Q ss_pred HHHHHHHHHccCCeEEEEeCCCCccccccccC----CCCCCCceEEEEeechhhhhc-CCceEEcc
Q 045843 248 RADMISEELKDKSYVLFLDEVSTEINLRDIGI----HDEHKNGKVVFACIFRNICGQ-IDEEVNVQ 308 (913)
Q Consensus 248 ~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~----~~~~~~s~iivTTR~~~v~~~-~~~~~~l~ 308 (913)
..-.|...|-.++-+|+||+..+..|...... -..-. ..||++|.+...... ++.++.+.
T Consensus 163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~tvlivsHd~~~l~~~~d~i~~L~ 227 (635)
T PRK11147 163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-GSIIFISHDRSFIRNMATRIVDLD 227 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhcCeEEEEE
Confidence 33445566667788999999988655432210 01112 368888888776554 55555553
No 380
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.63 E-value=0.019 Score=56.73 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=57.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc----cCCChHHHHHHHHHHHcc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA----EDHNIDQRADMISEELKD 258 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~----~~~~~~~~~~~l~~~l~~ 258 (913)
++.|.|+.|.||||+.+.+.-..-. .+-.+.++..-..- .....++..++... ..........++...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l-a~~G~~v~a~~~~~----~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM-AQIGSFVPAESAEL----PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH-HHhCCCeeehheEe----cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 4689999999999999999833211 11111111100000 00011111121111 112233334445555554
Q ss_pred --CCeEEEEeCCCCccccc---ccc---CC--CCCCCceEEEEeechhhhhc
Q 045843 259 --KSYVLFLDEVSTEINLR---DIG---IH--DEHKNGKVVFACIFRNICGQ 300 (913)
Q Consensus 259 --kr~LlVlDdv~~~~~~~---~~~---~~--~~~~~s~iivTTR~~~v~~~ 300 (913)
++-++++|+.-...+.. .+. .. ....++.+|++|...++...
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~ 127 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKL 127 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHH
Confidence 89999999987654322 110 01 12247889999998876554
No 381
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.62 E-value=0.16 Score=51.39 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=34.6
Q ss_pred HHHHHHccCCeEEEEeCCCCccccccc------cCCCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 251 MISEELKDKSYVLFLDEVSTEINLRDI------GIHDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 251 ~l~~~l~~kr~LlVlDdv~~~~~~~~~------~~~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
.+...+-.++-++++|+.....|.... .......|..||++|.+...... .+.++.+
T Consensus 136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l 199 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGII 199 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence 455556667889999998876543221 11112246778888888776544 4555444
No 382
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.61 E-value=0.22 Score=50.91 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=35.3
Q ss_pred HHHHHHHHccCCeEEEEeCCCCcccccc---c---cCCCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 249 ADMISEELKDKSYVLFLDEVSTEINLRD---I---GIHDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 249 ~~~l~~~l~~kr~LlVlDdv~~~~~~~~---~---~~~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
.-.+...+-.++-++++|+.....|-.. + .......|..||++|.+...... ++..+.+
T Consensus 121 rv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 186 (223)
T TIGR03771 121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL 186 (223)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3455666677889999999877544221 1 11112347788888887765443 4444444
No 383
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.61 E-value=0.27 Score=50.83 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=36.0
Q ss_pred HHHHHHHccCCeEEEEeCCCCccccccc------cCC-CCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 250 DMISEELKDKSYVLFLDEVSTEINLRDI------GIH-DEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 250 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~------~~~-~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
-.+...+-.++-++++|+.....|-... ... ....+..||++|.+...... ++.++.+
T Consensus 162 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 227 (236)
T cd03267 162 AEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVI 227 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 3455666677889999999876543211 111 22346788999988776544 5555554
No 384
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.59 E-value=0.095 Score=57.39 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=63.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDK 259 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 259 (913)
.-..|.|.|+.|.||||+.+.+.+... .+....++.- .+... -........+.....+.+.......++..|+..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~--~~~~~~i~ti-Edp~E--~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN--KNAAGHIITI-EDPIE--YVHRNKRSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC--cCCCCEEEEE-cCChh--hhccCccceEEccccCCCCcCHHHHHHHhhccC
Confidence 347899999999999999999887654 3444454432 22211 110000000000001112234566678888899
Q ss_pred CeEEEEeCCCCccccccccCCCCCCCceEEEEeechhh
Q 045843 260 SYVLFLDEVSTEINLRDIGIHDEHKNGKVVFACIFRNI 297 (913)
Q Consensus 260 r~LlVlDdv~~~~~~~~~~~~~~~~~s~iivTTR~~~v 297 (913)
+=.|++|++.+.+.+..... ....|-.|+.|+...++
T Consensus 196 pd~i~vgEird~~~~~~~l~-aa~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 196 PDVILIGEMRDLETVELALT-AAETGHLVFGTLHTNSA 232 (343)
T ss_pred CCEEEEeCCCCHHHHHHHHH-HHHcCCcEEEEEcCCCH
Confidence 99999999998766543211 23345556666655444
No 385
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.59 E-value=0.23 Score=52.60 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=35.9
Q ss_pred HHHHHHHHHHccCCeEEEEeCCCCcccccc---c---cCCCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 247 QRADMISEELKDKSYVLFLDEVSTEINLRD---I---GIHDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 247 ~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~---~---~~~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
...-.+...+-.++-+|+||+.....|... + .......|..||++|.+...+.. ++.++.+
T Consensus 144 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l 211 (274)
T PRK13647 144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVL 211 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 334455666777889999999987654321 1 00011236778888888765443 4444443
No 386
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.58 E-value=0.053 Score=50.73 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 163 PSLNKHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 163 ~gr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
||.-..++++.+.+.. .....|.|.|..|+||+++|+.++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 3566667777666632 3445678999999999999999987654
No 387
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.58 E-value=0.17 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.+++|.|+.|.||||+.+.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999997544
No 388
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.58 E-value=0.029 Score=52.82 Aligned_cols=24 Identities=42% Similarity=0.830 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999986654
No 389
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.57 E-value=0.26 Score=52.70 Aligned_cols=60 Identities=20% Similarity=0.154 Sum_probs=37.3
Q ss_pred HHHHHHHHHccCCeEEEEeCCCCcccccccc-----CC--CCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 248 RADMISEELKDKSYVLFLDEVSTEINLRDIG-----IH--DEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 248 ~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~-----~~--~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
..-.|...+-.++-+|++|+.....|..... +. ....|..||++|.+...... ++.++.+
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l 219 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVM 219 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3344566677789999999998865533211 11 22347778888888765544 4554444
No 390
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.55 E-value=0.13 Score=51.16 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=62.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc---ccCC--Cc----------eEEEEEeCCCCC---HHHHHHHHHHHccCCccC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG---ESRQ--FD----------FIFWVTVNSEGN---IRDIQEVLLKRLDLRAED 242 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~---~~~~--F~----------~~~wv~vs~~~~---~~~i~~~i~~~l~~~~~~ 242 (913)
-.+++|+|+.|.|||||++.+..... ..+. |+ ...|+ .+.+. ...+.+.+.-..... .-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~--~q~~~~~~~~tv~~~l~~~~~~~-~L 109 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYV--EQQDVHSPNLTVREALRFSALLR-GL 109 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEe--cccCccccCCcHHHHHHHHHHHh-cC
Confidence 46899999999999999999986321 1111 11 11222 22211 112222221100000 11
Q ss_pred CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc---c---cCCCCCCCceEEEEeechh-h-hhcCCceEEc
Q 045843 243 HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD---I---GIHDEHKNGKVVFACIFRN-I-CGQIDEEVNV 307 (913)
Q Consensus 243 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~---~---~~~~~~~~s~iivTTR~~~-v-~~~~~~~~~l 307 (913)
+.-+...-.+...+-.++-++++|+.....|... + .......|..||++|.+.. . ....+.++.+
T Consensus 110 SgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l 182 (192)
T cd03232 110 SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLL 182 (192)
T ss_pred CHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEE
Confidence 2222333345566667888999999877544221 1 1111224677888887764 2 2224555544
No 391
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.54 E-value=0.19 Score=56.23 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=58.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC-CHHHHHHHHHHHccCCc-------cCC-ChH-----H
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLRA-------EDH-NID-----Q 247 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~-~~~-----~ 247 (913)
..++|+|..|+|||||+.++........ =+.++++-+.+.. .+.++.+.+...=.... .+. ... .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4789999999999999999877665222 2467778887753 46677777765422211 111 111 2
Q ss_pred HHHHHHHHH---ccCCeEEEEeCCCCc
Q 045843 248 RADMISEEL---KDKSYVLFLDEVSTE 271 (913)
Q Consensus 248 ~~~~l~~~l---~~kr~LlVlDdv~~~ 271 (913)
..-.+.+++ +++.+||++|++...
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHHH
Confidence 233456766 579999999998764
No 392
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.52 E-value=0.14 Score=56.70 Aligned_cols=87 Identities=20% Similarity=0.339 Sum_probs=55.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC-CHHHHHHHHHHHccCCc-------cCCC-h-----H
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLRA-------EDHN-I-----D 246 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~-~-----~ 246 (913)
-..++|+|..|+|||||++.+..... .+..+.+-+.+.. .+.++.+.++..-+... .+.. . -
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 35799999999999999999986432 2566667777654 45566666554422211 1111 1 1
Q ss_pred HHHHHHHHHH--ccCCeEEEEeCCCCc
Q 045843 247 QRADMISEEL--KDKSYVLFLDEVSTE 271 (913)
Q Consensus 247 ~~~~~l~~~l--~~kr~LlVlDdv~~~ 271 (913)
..+-.+.+++ +++..|+++||+...
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1223355666 589999999998763
No 393
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.49 E-value=0.11 Score=56.99 Aligned_cols=74 Identities=26% Similarity=0.355 Sum_probs=49.9
Q ss_pred cccchHHHHHHHHHHHhc--------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---ceEEEEEeC-CC
Q 045843 161 EVPSLNKHLKMLQECLRN--------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQF---DFIFWVTVN-SE 222 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~~ 222 (913)
+++|.+..++.+..++.. .....|.++|++|+|||++|+.+..... ..| +...|...+ ..
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~--~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC--ChheeecchhhccCCccc
Confidence 467999998888877732 0136899999999999999999998875 333 333233221 22
Q ss_pred CCHHHHHHHHHHHc
Q 045843 223 GNIRDIQEVLLKRL 236 (913)
Q Consensus 223 ~~~~~i~~~i~~~l 236 (913)
.+.+.+.+.+.+..
T Consensus 94 ~d~e~~ir~L~~~A 107 (443)
T PRK05201 94 RDVESIIRDLVEIA 107 (443)
T ss_pred CCHHHHHHHHHHHH
Confidence 36666666666554
No 394
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.49 E-value=0.24 Score=57.65 Aligned_cols=127 Identities=18% Similarity=0.161 Sum_probs=69.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhccc-CC--Cc---------------eEEEEEeCC----CCCH-------------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGES-RQ--FD---------------FIFWVTVNS----EGNI------------- 225 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~--F~---------------~~~wv~vs~----~~~~------------- 225 (913)
-.+++|+|+.|+|||||.+.++.-.... +. |+ .+.++.-.. ..++
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 116 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQA 116 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchH
Confidence 3589999999999999999998643210 00 11 122322110 0111
Q ss_pred -HHHHHHHHHHccCCcc------C-CChHHHHHHHHHHHccCCeEEEEeCCCCccccccc------cCCCCCCCceEEEE
Q 045843 226 -RDIQEVLLKRLDLRAE------D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDI------GIHDEHKNGKVVFA 291 (913)
Q Consensus 226 -~~i~~~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~------~~~~~~~~s~iivT 291 (913)
.+....+++.++.... . +.-+...-.+...|-.++-+|+||+.....|.... .......|..||++
T Consensus 117 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiv 196 (510)
T PRK15439 117 SMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFI 196 (510)
T ss_pred HHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 1223345555554321 1 22233344556666678899999998876543211 00112246778888
Q ss_pred eechhhhhc-CCceEEc
Q 045843 292 CIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 292 TR~~~v~~~-~~~~~~l 307 (913)
|.+...... ++.++.+
T Consensus 197 tHd~~~~~~~~d~i~~l 213 (510)
T PRK15439 197 SHKLPEIRQLADRISVM 213 (510)
T ss_pred eCCHHHHHHhCCEEEEE
Confidence 888665444 4555544
No 395
>PRK03839 putative kinase; Provisional
Probab=94.49 E-value=0.035 Score=54.68 Aligned_cols=24 Identities=50% Similarity=0.785 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|.|+|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998875
No 396
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.48 E-value=0.035 Score=56.08 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|+|++|+||||||+.+.....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 446899999999999999999997654
No 397
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.47 E-value=0.11 Score=54.31 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+.|.|.|.+|+||||+|+.+.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999998766
No 398
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.47 E-value=0.016 Score=34.64 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=15.5
Q ss_pred CcceeecCCccCccccChhhhcc
Q 045843 576 NLKALFLNNCCQLMRLPAEVGDL 598 (913)
Q Consensus 576 ~L~~L~L~~c~~l~~lP~~i~~L 598 (913)
+|++|+|++| .++.+|.++++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5788888885 677888776553
No 399
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.46 E-value=0.36 Score=56.08 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=42.9
Q ss_pred ccccchHHHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC
Q 045843 160 EEVPSLNKHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE 222 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (913)
..++|+...+.++.+.+.. ..-.-|.|.|..|+|||++|+.+++.-. ..-...+.|.+..-
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~ 249 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAAL 249 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccC
Confidence 4567999888888887743 3345788999999999999999987643 12223344555543
No 400
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.45 E-value=0.31 Score=52.05 Aligned_cols=61 Identities=18% Similarity=0.118 Sum_probs=36.9
Q ss_pred HHHHHHHHHHccCCeEEEEeCCCCccccccc---c--CC-CCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 247 QRADMISEELKDKSYVLFLDEVSTEINLRDI---G--IH-DEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 247 ~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~---~--~~-~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
...-.+...+-.++-+|+||+.....|.... . +. -...|..||++|.+...+.. ++.++.+
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l 217 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLL 217 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 3344456666678889999998876543321 0 01 12247789999988775543 4554444
No 401
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.45 E-value=0.096 Score=53.44 Aligned_cols=24 Identities=42% Similarity=0.715 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|.|+|++|+||||+|+.+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988765
No 402
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.43 E-value=0.24 Score=53.75 Aligned_cols=90 Identities=13% Similarity=0.212 Sum_probs=56.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccC----CCceEEEEEeCCCCCHHHHHHHHHHHccCCccC----------CCh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESR----QFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAED----------HNI 245 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------~~~ 245 (913)
.-.++-|+|.+|+|||+++..++-...... .-..++|+.....|+.+++. +|++.++...+. .+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 346888999999999999998875433211 11368999999999888764 556666543211 222
Q ss_pred HHHHHHH---HHHH-ccCCeEEEEeCCCC
Q 045843 246 DQRADMI---SEEL-KDKSYVLFLDEVST 270 (913)
Q Consensus 246 ~~~~~~l---~~~l-~~kr~LlVlDdv~~ 270 (913)
+.....+ ...+ ..+--|||+|-+-.
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 3332222 2223 34566888888754
No 403
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.42 E-value=0.17 Score=54.71 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=42.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccC----CCceEEEEEeCCCCCHHHHHHHHHHHccC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESR----QFDFIFWVTVNSEGNIRDIQEVLLKRLDL 238 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 238 (913)
.-.++-|+|.+|+||||++.+++....... .=..++||.....|+.+++.+ +++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 346889999999999999999987654211 113789999988888877654 4444443
No 404
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.41 E-value=0.48 Score=57.36 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=36.8
Q ss_pred cccccchHHHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 159 MEEVPSLNKHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+..++|+...+..+.+.+.. ..-.-|.|.|..|+|||++|+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34578999888888766632 233478899999999999999998764
No 405
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.17 Score=52.38 Aligned_cols=81 Identities=21% Similarity=0.384 Sum_probs=50.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhccc--CCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHcc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGES--RQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKD 258 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 258 (913)
-++|-+.||+|.|||+|.++++++..++ +.+....-+.++.. .+..+-..+ .+.-+....+++++.+++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE-----SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE-----SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh-----hhhHHHHHHHHHHHHHhC
Confidence 3689999999999999999999999874 34444444444332 222222211 123445566677777766
Q ss_pred CC--eEEEEeCCCC
Q 045843 259 KS--YVLFLDEVST 270 (913)
Q Consensus 259 kr--~LlVlDdv~~ 270 (913)
+. ..+.+|+|.+
T Consensus 248 ~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 248 RGNLVFVLIDEVES 261 (423)
T ss_pred CCcEEEEEeHHHHH
Confidence 54 3455788764
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.38 E-value=0.13 Score=49.49 Aligned_cols=112 Identities=20% Similarity=0.294 Sum_probs=60.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhccc-----------CCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGES-----------RQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRAD 250 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~-----------~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~ 250 (913)
++..|+|+.|.||||+.+.+.--.-.. ..+....+- +. + +....+.+ .. +....
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~--~--------i~~~~~lS---~G-~~~~~ 86 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS-AE--L--------IFTRLQLS---GG-EKELS 86 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE-EE--E--------ehheeecc---cc-HHHHH
Confidence 589999999999999998864222111 111111111 00 0 11111111 11 22233
Q ss_pred HHHHHHc----cCCeEEEEeCCCCccccccc---c--C-C-CCCCCceEEEEeechhhhhcCCceEEccc
Q 045843 251 MISEELK----DKSYVLFLDEVSTEINLRDI---G--I-H-DEHKNGKVVFACIFRNICGQIDEEVNVQR 309 (913)
Q Consensus 251 ~l~~~l~----~kr~LlVlDdv~~~~~~~~~---~--~-~-~~~~~s~iivTTR~~~v~~~~~~~~~l~~ 309 (913)
.+...+. +++-++++|+.....+.... . + . ... ++.+|+||.+.......+..+.+..
T Consensus 87 ~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 87 ALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 3444443 27789999999886554321 1 1 1 122 7899999998887655555555543
No 407
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.38 E-value=0.17 Score=48.99 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=49.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHcc--CCe
Q 045843 184 ICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKD--KSY 261 (913)
Q Consensus 184 i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~--kr~ 261 (913)
+.|.|..|+|||++|.++... .....+++.-.+.+|.+ ..+.|..............+....+.+.+.. +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 678999999999999998755 22456777777776653 4444444333333333333334445555532 344
Q ss_pred EEEEeCCCC
Q 045843 262 VLFLDEVST 270 (913)
Q Consensus 262 LlVlDdv~~ 270 (913)
.+++|.+..
T Consensus 76 ~VLIDclt~ 84 (169)
T cd00544 76 VVLIDCLTL 84 (169)
T ss_pred EEEEEcHhH
Confidence 799999754
No 408
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.37 E-value=0.31 Score=52.78 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=56.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhccc----CCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc----------CCChH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGES----RQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----------DHNID 246 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~~ 246 (913)
-.++-|+|.+|+|||+|+.+++-..... ..-..++||.....|+++++.+ +++.++...+ ..+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 4588899999999999999886443321 1124789999999999888755 5566654321 12233
Q ss_pred HHH---HHHHHHH-ccCCeEEEEeCCCC
Q 045843 247 QRA---DMISEEL-KDKSYVLFLDEVST 270 (913)
Q Consensus 247 ~~~---~~l~~~l-~~kr~LlVlDdv~~ 270 (913)
+.. ..+...+ ..+--|||+|.+-.
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 322 3333333 23456889998764
No 409
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.36 E-value=0.26 Score=52.98 Aligned_cols=60 Identities=8% Similarity=0.093 Sum_probs=36.1
Q ss_pred HHHHHHHHHccCCeEEEEeCCCCcccccccc-----CC-CCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 248 RADMISEELKDKSYVLFLDEVSTEINLRDIG-----IH-DEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 248 ~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~-----~~-~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
..-.+...+-.++-+|+||+.....|..... +. -...|..||++|.+...+.. ++.++.+
T Consensus 172 qrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 172 RRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 3344566677788999999998765433210 00 11347778888888764433 4444444
No 410
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.36 E-value=0.27 Score=51.68 Aligned_cols=89 Identities=21% Similarity=0.220 Sum_probs=49.3
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHH--HHHHHHHHHccCCc----cCCCh-HHHHHH
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIR--DIQEVLLKRLDLRA----EDHNI-DQRADM 251 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~i~~~i~~~l~~~~----~~~~~-~~~~~~ 251 (913)
.+.+++.++|++|+||||++..++.... ..-..+..+... .+... +-++...+..+... ...+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 3457999999999999999999887765 222344445433 33332 22333444444322 11222 222334
Q ss_pred HHHHHccCCeEEEEeCCCC
Q 045843 252 ISEELKDKSYVLFLDEVST 270 (913)
Q Consensus 252 l~~~l~~kr~LlVlDdv~~ 270 (913)
+........=++++|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4444444556788887654
No 411
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.36 E-value=0.45 Score=47.81 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHHHHHccCCeEEEEeCCCCcccccc----cc---CC-CCCCCceEEEEeechhhhhcCCceEEcc
Q 045843 251 MISEELKDKSYVLFLDEVSTEINLRD----IG---IH-DEHKNGKVVFACIFRNICGQIDEEVNVQ 308 (913)
Q Consensus 251 ~l~~~l~~kr~LlVlDdv~~~~~~~~----~~---~~-~~~~~s~iivTTR~~~v~~~~~~~~~l~ 308 (913)
.+...+..++-++++|+.....+... +. .. ....|..||++|.+.......+.++.+.
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~ 196 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVE 196 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEe
Confidence 35566678899999999987654322 21 11 1222667888888876654455555553
No 412
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.36 E-value=0.17 Score=56.86 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=60.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-CCHHHHHHHHHHHccCCc-------cCCC-h-----HH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE-GNIRDIQEVLLKRLDLRA-------EDHN-I-----DQ 247 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~-------~~~~-~-----~~ 247 (913)
..++|+|..|+|||||+.++.+.... .+-+.++++-+.+. ..+.++.+.+...-.... .+.. . -.
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 47899999999999999998877752 25678888888765 346677777765422211 1111 1 12
Q ss_pred HHHHHHHHH--c-cCCeEEEEeCCCCc
Q 045843 248 RADMISEEL--K-DKSYVLFLDEVSTE 271 (913)
Q Consensus 248 ~~~~l~~~l--~-~kr~LlVlDdv~~~ 271 (913)
..-.+.+++ + ++..|+++|++...
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccchHH
Confidence 234456666 3 79999999999653
No 413
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.35 E-value=0.25 Score=48.92 Aligned_cols=45 Identities=24% Similarity=0.216 Sum_probs=31.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHH
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
++.|.|++|+|||++|.++..... +.=..++|++..+ +...+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC--CHHHHHHH
Confidence 367899999999999999876654 2235577887655 44555443
No 414
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.34 E-value=0.19 Score=49.91 Aligned_cols=65 Identities=22% Similarity=0.363 Sum_probs=39.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHH
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEE 255 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~ 255 (913)
.|+|.|-||+||||+|..+......++.| .+.-|...+++++ ..+++...+...+......+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL-------~~~LGve~~~~~lg~~~e~~~k~ 66 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL-------PEALGVEEPMKYLGGKRELLKKR 66 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh-------HHhcCCCCCCcccccHHHHHHHH
Confidence 68999999999999999966555433333 3444555556553 44666655443333333333333
No 415
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.34 E-value=0.038 Score=54.00 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=24.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|+|-||-|+||||||+.+.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998886
No 416
>PRK13409 putative ATPase RIL; Provisional
Probab=94.34 E-value=0.28 Score=57.86 Aligned_cols=125 Identities=20% Similarity=0.204 Sum_probs=70.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEE-----EeCCC------CCHHH-------------HHHHHHHHc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWV-----TVNSE------GNIRD-------------IQEVLLKRL 236 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv-----~vs~~------~~~~~-------------i~~~i~~~l 236 (913)
-.+++|+|+.|+|||||++.++..... ....+++ .+.+. .++.+ ...++++.+
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p---~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l 441 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKP---DEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL 441 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC
Confidence 358999999999999999999865431 1111111 11222 12222 123344444
Q ss_pred cCCc------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccccc-----CC--CCCCCceEEEEeechhhhhc-C
Q 045843 237 DLRA------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDIG-----IH--DEHKNGKVVFACIFRNICGQ-I 301 (913)
Q Consensus 237 ~~~~------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~-----~~--~~~~~s~iivTTR~~~v~~~-~ 301 (913)
+... .. +.-+...-.+...+..++-+++||+-....|..... +. ....|..||++|.+...+.. +
T Consensus 442 ~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a 521 (590)
T PRK13409 442 QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS 521 (590)
T ss_pred CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 4321 11 222333445666777889999999988765543211 00 22346778888888766554 5
Q ss_pred CceEEcc
Q 045843 302 DEEVNVQ 308 (913)
Q Consensus 302 ~~~~~l~ 308 (913)
+.++.++
T Consensus 522 Drvivl~ 528 (590)
T PRK13409 522 DRLMVFE 528 (590)
T ss_pred CEEEEEc
Confidence 5555554
No 417
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.33 E-value=0.41 Score=50.11 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|..|.|||||++.+....
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998653
No 418
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.32 E-value=0.041 Score=54.65 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998765
No 419
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.32 E-value=0.15 Score=56.15 Aligned_cols=82 Identities=22% Similarity=0.396 Sum_probs=50.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccC------CChHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAED------HNIDQRADMISE 254 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~ 254 (913)
-.++.|.|.+|+|||||+.+++.... ..-..++|+...+. ...+. .-++.++...+. .+.+.+...+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~- 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE- 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH-
Confidence 45899999999999999999987765 33346777776443 33332 223455543221 23333333332
Q ss_pred HHccCCeEEEEeCCCC
Q 045843 255 ELKDKSYVLFLDEVST 270 (913)
Q Consensus 255 ~l~~kr~LlVlDdv~~ 270 (913)
+.+.-+||+|.+..
T Consensus 156 --~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 --ELKPDLVIIDSIQT 169 (372)
T ss_pred --hcCCcEEEEcchHH
Confidence 24677899999764
No 420
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.31 E-value=0.32 Score=50.82 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=35.7
Q ss_pred HHHHHHHHccCCeEEEEeCCCCcccccc---cc--CC-CCCCCceEEEEeechhhhhc-CCceEEcc
Q 045843 249 ADMISEELKDKSYVLFLDEVSTEINLRD---IG--IH-DEHKNGKVVFACIFRNICGQ-IDEEVNVQ 308 (913)
Q Consensus 249 ~~~l~~~l~~kr~LlVlDdv~~~~~~~~---~~--~~-~~~~~s~iivTTR~~~v~~~-~~~~~~l~ 308 (913)
.-.+...+-..+-++++|+.....+-.. +. +. ....+..||++|.+...... ++.++.+.
T Consensus 147 rv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~ 213 (255)
T cd03236 147 RVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY 213 (255)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC
Confidence 3344555556778999999887644321 10 11 11236778888888776554 55555554
No 421
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.30 E-value=0.22 Score=59.58 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=36.9
Q ss_pred HHHHHHHHHccCCeEEEEeCCCCccccccccCC---CCCCCceEEEEeechhhhhc-CCceEEcc
Q 045843 248 RADMISEELKDKSYVLFLDEVSTEINLRDIGIH---DEHKNGKVVFACIFRNICGQ-IDEEVNVQ 308 (913)
Q Consensus 248 ~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~---~~~~~s~iivTTR~~~v~~~-~~~~~~l~ 308 (913)
..-.|...|-.++=+|+||+..+..|.+....- -...+..||++|.+...... ++.++.+.
T Consensus 156 qRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEe
Confidence 334455666678889999999887554332110 01113468888888776554 55555553
No 422
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.29 E-value=0.087 Score=61.82 Aligned_cols=80 Identities=9% Similarity=0.220 Sum_probs=59.9
Q ss_pred cCccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
.....+++|.++.++.|...+... +.+.++|++|+||||+|+.+.+... ..+++..+|...+. .+...+++.+..+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~np~-~~~~~~~~~v~~~ 102 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPNPE-DPNNPKIRTVPAG 102 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeCCC-cchHHHHHHHHHh
Confidence 344556789999998888777655 4789999999999999999987753 33467778876644 3677778888776
Q ss_pred ccCC
Q 045843 236 LDLR 239 (913)
Q Consensus 236 l~~~ 239 (913)
++..
T Consensus 103 ~G~~ 106 (637)
T PRK13765 103 KGKQ 106 (637)
T ss_pred cCHH
Confidence 6543
No 423
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.27 E-value=0.063 Score=58.09 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=43.8
Q ss_pred ccCccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 155 HAKKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+.-++..++|.++.+..|...+.++.+.-|.|.|..|+||||+|+.+++-.
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 345667789999999999888888888888899999999999999997654
No 424
>PRK06762 hypothetical protein; Provisional
Probab=94.26 E-value=0.042 Score=53.29 Aligned_cols=25 Identities=44% Similarity=0.634 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998776
No 425
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=0.32 Score=52.77 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=53.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC-CHHHHHHHHHHHccCCcc-CCChHHHHHHHHHHHc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLRAE-DHNIDQRADMISEELK 257 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~ 257 (913)
+.+++.++|+.|+||||++..+...... +-..+.+|+..... ...+-++...+.++.... ..+..++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~--~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLK--QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 4579999999999999999998876642 22345555554321 234445556666665432 2344445444433321
Q ss_pred -cCCeEEEEeCCCC
Q 045843 258 -DKSYVLFLDEVST 270 (913)
Q Consensus 258 -~kr~LlVlDdv~~ 270 (913)
+..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3456788887654
No 426
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.22 E-value=0.044 Score=54.33 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
++.+|||-|.+|+||||+|+.++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 346999999999999999999998876
No 427
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.22 E-value=0.22 Score=49.72 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=59.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCceEEEE---------------EeCCCCC---HHHHHHHHHHHccCC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI--GESRQFDFIFWV---------------TVNSEGN---IRDIQEVLLKRLDLR 239 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~--~~~~~F~~~~wv---------------~vs~~~~---~~~i~~~i~~~l~~~ 239 (913)
.-.+++|.|+.|.|||||.+.+..-. .. ....+++ .+.+.+. ...+.+.+.-.....
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~ 110 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR 110 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc
Confidence 34589999999999999999998754 21 1111111 1122211 112222221110000
Q ss_pred ccCCChHHHHHHHHHHHccCCeEEEEeCCCCccccccc---c---CCCCCCCceEEEEeechh
Q 045843 240 AEDHNIDQRADMISEELKDKSYVLFLDEVSTEINLRDI---G---IHDEHKNGKVVFACIFRN 296 (913)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~---~---~~~~~~~s~iivTTR~~~ 296 (913)
.-+.-+...-.+...+-.++-++++|+.....|.... . ......|..||++|.+..
T Consensus 111 -~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 -GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 1122233334556666678889999998876543211 0 011224777888888763
No 428
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.21 E-value=0.29 Score=55.63 Aligned_cols=124 Identities=10% Similarity=0.011 Sum_probs=67.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEE-------Ee----CCCCCHHH------------------HHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWV-------TV----NSEGNIRD------------------IQEV 231 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv-------~v----s~~~~~~~------------------i~~~ 231 (913)
-.+++|+|+.|.|||||++.+...... ..+.+++ .. ....++.+ ....
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e 126 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE 126 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCC---CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence 358999999999999999999865432 1122221 11 11111111 1123
Q ss_pred HHHHccCCc------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc---c---cCCCCCCCceEEEEeechhhh
Q 045843 232 LLKRLDLRA------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD---I---GIHDEHKNGKVVFACIFRNIC 298 (913)
Q Consensus 232 i~~~l~~~~------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~---~---~~~~~~~~s~iivTTR~~~v~ 298 (913)
+++.++... .. +.-+...-.+...+-..+-+|+||+.....|... + .......|..||++|.+....
T Consensus 127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i 206 (549)
T PRK13545 127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQV 206 (549)
T ss_pred HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 344443321 11 1223333345666667889999999887654321 1 000123467888888886655
Q ss_pred hc-CCceEEc
Q 045843 299 GQ-IDEEVNV 307 (913)
Q Consensus 299 ~~-~~~~~~l 307 (913)
.. ++..+.+
T Consensus 207 ~~l~DrIivL 216 (549)
T PRK13545 207 KSFCTKALWL 216 (549)
T ss_pred HHhCCEEEEE
Confidence 44 4444444
No 429
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.18 E-value=0.61 Score=50.68 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 163 PSLNKHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 163 ~gr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+|....+.++.+.+.. ..-.-|.|.|..|+||+++|+.+++.-
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 5777777777666632 233467999999999999999998654
No 430
>PRK04328 hypothetical protein; Provisional
Probab=94.16 E-value=0.24 Score=51.60 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=31.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE 222 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (913)
.-.++.|.|.+|+|||+||.++....- +.-+..+|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeCC
Confidence 346899999999999999998765543 33466788887664
No 431
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.09 E-value=0.25 Score=50.18 Aligned_cols=24 Identities=38% Similarity=0.749 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|.|+|++|+||||+|+.+.....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987754
No 432
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.09 E-value=0.081 Score=57.22 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=39.7
Q ss_pred cccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 159 MEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+..++|.+..+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 44578999999888777777777788899999999999999997554
No 433
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.09 E-value=0.16 Score=58.42 Aligned_cols=130 Identities=20% Similarity=0.245 Sum_probs=74.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhccc-C-----CCceEEEEEeCC-C--------------C-C-HHHHHHHHHHHc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGES-R-----QFDFIFWVTVNS-E--------------G-N-IRDIQEVLLKRL 236 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~-----~F~~~~wv~vs~-~--------------~-~-~~~i~~~i~~~l 236 (913)
.-..|+|+|+.|+|||||.+.+....... + .--.+.++.-.. . + + .+.-.+..+.++
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 34589999999999999999996654321 1 111122222111 0 0 1 023334444444
Q ss_pred cCCccC--------CChHHHHHHHHHHHccCCeEEEEeCCCCccccccccCC---CCCCCceEEEEeechhhhhc-CCce
Q 045843 237 DLRAED--------HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDIGIH---DEHKNGKVVFACIFRNICGQ-IDEE 304 (913)
Q Consensus 237 ~~~~~~--------~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~---~~~~~s~iivTTR~~~v~~~-~~~~ 304 (913)
+...+. +.-+...-.|...+-.++=+||||+-.+..|.+.+..- -......||+.|.++..... +..+
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i 506 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRI 506 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceE
Confidence 433211 22233444566667788999999999987776544211 23344568888888877666 5555
Q ss_pred EEccc
Q 045843 305 VNVQR 309 (913)
Q Consensus 305 ~~l~~ 309 (913)
+.+.+
T Consensus 507 ~~~~~ 511 (530)
T COG0488 507 WLVED 511 (530)
T ss_pred EEEcC
Confidence 55553
No 434
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.08 E-value=0.085 Score=59.00 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=36.1
Q ss_pred ccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 162 VPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
++||++.++.+...+..+ ..|.+.|++|+|||++|+.+.....
T Consensus 22 i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 22 LYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred ccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhc
Confidence 579999999988777543 3688999999999999999998654
No 435
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.06 E-value=0.39 Score=45.23 Aligned_cols=85 Identities=15% Similarity=0.281 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHccCCcc-----C--CChHHHHHHHHHHHccCCeEEEEeCCCCccc------cccccCC-CCCCCceE
Q 045843 223 GNIRDIQEVLLKRLDLRAE-----D--HNIDQRADMISEELKDKSYVLFLDEVSTEIN------LRDIGIH-DEHKNGKV 288 (913)
Q Consensus 223 ~~~~~i~~~i~~~l~~~~~-----~--~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~~~~~~-~~~~~s~i 288 (913)
.+.....+..+.+++.... . +.-++..-.|.+.+...+-+++-|+-....+ ..++.+. +...|+..
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~Tl 200 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTL 200 (228)
T ss_pred ccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceE
Confidence 3566677788888876541 1 3445555567888889999999998765433 2233444 67889999
Q ss_pred EEEeechhhhhcCCceEEc
Q 045843 289 VFACIFRNICGQIDEEVNV 307 (913)
Q Consensus 289 ivTTR~~~v~~~~~~~~~l 307 (913)
|+.|.+..+|..+...+.+
T Consensus 201 VlVTHD~~LA~Rc~R~~r~ 219 (228)
T COG4181 201 VLVTHDPQLAARCDRQLRL 219 (228)
T ss_pred EEEeCCHHHHHhhhheeee
Confidence 9999999998875555544
No 436
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.06 E-value=0.25 Score=54.97 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=55.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC-CHHHHHHHHHHHccCCc-------cCC-Ch-----
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLRA-------EDH-NI----- 245 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~-~~----- 245 (913)
.-..++|+|..|+|||||++.+++... .+..+++-+.+.. .+.+..+..+..-+... .+. ..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 345899999999999999999987654 2455566676653 45555555544322211 111 11
Q ss_pred HHHHHHHHHHH--ccCCeEEEEeCCCCc
Q 045843 246 DQRADMISEEL--KDKSYVLFLDEVSTE 271 (913)
Q Consensus 246 ~~~~~~l~~~l--~~kr~LlVlDdv~~~ 271 (913)
-...-.+.+++ +++..|+++||+...
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 11223355666 489999999999763
No 437
>PRK14974 cell division protein FtsY; Provisional
Probab=94.05 E-value=0.45 Score=51.44 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCH--HHHHHHHHHHccCCccC----CChHHH-HHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNI--RDIQEVLLKRLDLRAED----HNIDQR-ADMI 252 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~~~~----~~~~~~-~~~l 252 (913)
+..+|.++|++|+||||++..++..... ..+. ++.+. ...+.. .+-++...+.++..... .+.... .+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4579999999999999988888876642 2232 33333 333332 23355566666654311 222222 2222
Q ss_pred HHHHccCCeEEEEeCCCCc
Q 045843 253 SEELKDKSYVLFLDEVSTE 271 (913)
Q Consensus 253 ~~~l~~kr~LlVlDdv~~~ 271 (913)
...-....=+|++|-.-..
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 2222222338889987653
No 438
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.05 E-value=0.13 Score=47.19 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHhccc
Q 045843 167 KHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAIGES 208 (913)
Q Consensus 167 ~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 208 (913)
++.+++-+.+.. ..-.+|.+.|.-|.||||+++.+.+...+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344444444432 234589999999999999999999887643
No 439
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.04 E-value=0.45 Score=52.97 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|.++|+.|+||||++..++...+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999998886654
No 440
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.04 E-value=0.26 Score=53.09 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=54.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhccc---C-CCceEEEEEeCCCCCHHHHHHHHHHHccCCcc----------CCCh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGES---R-QFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----------DHNI 245 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~ 245 (913)
.-.++.|+|.+|+|||||+..++...... . .-..++|+.....++..++ .++++.++.... ..+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 35689999999999999999987543221 1 1235799998888887764 445555543321 0122
Q ss_pred HHH---HHHHHHHHc-cCCeEEEEeCCCC
Q 045843 246 DQR---ADMISEELK-DKSYVLFLDEVST 270 (913)
Q Consensus 246 ~~~---~~~l~~~l~-~kr~LlVlDdv~~ 270 (913)
++. ...+...+. .+--|||+|-+-.
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 222 222333332 3556888888653
No 441
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.52 Score=48.11 Aligned_cols=54 Identities=19% Similarity=0.444 Sum_probs=42.3
Q ss_pred ccccCccccccchHHHHHHHHHHHh----------c---CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 153 KKHAKKMEEVPSLNKHLKMLQECLR----------N---VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 153 ~~~~~~~~~~~gr~~~~~~l~~~L~----------~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..|...+.++=|-+..+.+|.+.+. + ...+-|.++|.+|.|||-||++|+|...
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 3455556667789999999988762 1 2356788999999999999999998876
No 442
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.02 E-value=0.036 Score=55.80 Aligned_cols=112 Identities=16% Similarity=0.170 Sum_probs=57.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcc--cCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc----cCCChHHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGE--SRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA----EDHNIDQRADMISEE 255 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~----~~~~~~~~~~~l~~~ 255 (913)
.+++|.|+.|.||||+.+.+....-. .+.|-..-+..+.. ..++...++... .......-..++...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~-------~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i 102 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPL-------VDRIFTRIGAEDSISDGRSTFMAELLELKEI 102 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCC-------cCEEEEEecCcccccCCceeHHHHHHHHHHH
Confidence 68999999999999999999843211 01111100000000 011111111111 001122222233333
Q ss_pred H--ccCCeEEEEeCCCCccccc---ccc---CC-CCCCCceEEEEeechhhhhc
Q 045843 256 L--KDKSYVLFLDEVSTEINLR---DIG---IH-DEHKNGKVVFACIFRNICGQ 300 (913)
Q Consensus 256 l--~~kr~LlVlDdv~~~~~~~---~~~---~~-~~~~~s~iivTTR~~~v~~~ 300 (913)
+ ...+-++++|+.-...+.. .+. .. ....+..+|++|.+..+...
T Consensus 103 ~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 103 LSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADL 156 (202)
T ss_pred HHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHH
Confidence 3 2588999999997654321 110 01 12347789999998877655
No 443
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.02 E-value=0.042 Score=48.74 Aligned_cols=23 Identities=43% Similarity=0.904 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhc
Q 045843 184 ICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 184 i~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
|-|+|++|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999887765
No 444
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.99 E-value=0.37 Score=53.61 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++++|+.|+||||++..+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999887654
No 445
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.99 E-value=0.27 Score=52.94 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=36.0
Q ss_pred HHHHHHHccCCeEEEEeCCCCccccc-------cccCCCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 250 DMISEELKDKSYVLFLDEVSTEINLR-------DIGIHDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 250 ~~l~~~l~~kr~LlVlDdv~~~~~~~-------~~~~~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
-.+...+-.++-+|+||+-....|.. .+.- -...|..||+||.+...+.. +++++.+
T Consensus 147 l~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~-l~~~g~till~sH~l~e~~~~~d~i~il 211 (306)
T PRK13537 147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS-LLARGKTILLTTHFMEEAERLCDRLCVI 211 (306)
T ss_pred HHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHH-HHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 34556666788999999988764422 2211 12347889999998775544 4444444
No 446
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.99 E-value=0.037 Score=67.04 Aligned_cols=185 Identities=14% Similarity=0.160 Sum_probs=92.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc----CCChHHHHHHHHH
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----DHNIDQRADMISE 254 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----~~~~~~~~~~l~~ 254 (913)
.+.+++.|.|+.+.||||+.+.+.-..-. ..+-.+|++.... .-.+...|+..++.... .++...-+..+..
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~m---aq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~ 400 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALM---AKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVR 400 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHH---HHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHH
Confidence 34578999999999999999988643210 0111122222100 00111111111221110 0112222222333
Q ss_pred HHc--cCCeEEEEeCCCCccccc---cccC--C--CCCCCceEEEEeechhhhhc-C--Cc--eEEcccCChHHHHHHHH
Q 045843 255 ELK--DKSYVLFLDEVSTEINLR---DIGI--H--DEHKNGKVVFACIFRNICGQ-I--DE--EVNVQRLSGKDAQKLFW 320 (913)
Q Consensus 255 ~l~--~kr~LlVlDdv~~~~~~~---~~~~--~--~~~~~s~iivTTR~~~v~~~-~--~~--~~~l~~L~~~~~~~Lf~ 320 (913)
.+. +.+-|+++|+.-...+.. .+.. . ....|+.+|+||....+... . .. ...+.. +++......
T Consensus 401 Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~--d~~~l~~~Y 478 (782)
T PRK00409 401 ILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEF--DEETLRPTY 478 (782)
T ss_pred HHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE--ecCcCcEEE
Confidence 332 478899999998754422 1211 0 22457899999999877554 1 11 111111 111111000
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHHHHhhcC
Q 045843 321 ETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDMLSQLRS 376 (913)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~ 376 (913)
+... ..+ -...|-+|++++ |+|-.|.--|..+... .....+.+++.+..
T Consensus 479 -kl~~---G~~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~l~~ 527 (782)
T PRK00409 479 -RLLI---GIP-GKSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIASLEE 527 (782)
T ss_pred -EEee---CCC-CCcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 1101 111 134678888887 7888888888777665 45577777766543
No 447
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.98 E-value=0.38 Score=49.40 Aligned_cols=46 Identities=24% Similarity=0.235 Sum_probs=32.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQ 229 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~ 229 (913)
.-..+.|.|.+|+||||+|.++....- ..-...+|++... +.+.+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~--~~~~i~ 64 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEE--SRESII 64 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccC--CHHHHH
Confidence 346899999999999999998765443 2345678887644 334443
No 448
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.97 E-value=0.4 Score=49.16 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=32.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 232 (913)
-.++.|.|..|+||||+|.++...... .. ...++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ-NG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh-CC-CcEEEEeCCC--CHHHHHHHH
Confidence 459999999999999998666554421 22 4456666333 456666665
No 449
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.96 E-value=1.9 Score=47.19 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=45.0
Q ss_pred HHHHHHHHhc---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC--HHHHHHHHHHHcc
Q 045843 169 LKMLQECLRN---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN--IRDIQEVLLKRLD 237 (913)
Q Consensus 169 ~~~l~~~L~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~ 237 (913)
.++|++.|.. ....||-.+|.-|.||||-|..+++..+- ....+-+...+.+. .-+-++.+.++++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 4566666642 23578999999999999999998888863 33333333334333 3344677777776
Q ss_pred CCc
Q 045843 238 LRA 240 (913)
Q Consensus 238 ~~~ 240 (913)
...
T Consensus 156 v~~ 158 (451)
T COG0541 156 VPF 158 (451)
T ss_pred Cce
Confidence 543
No 450
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.42 Score=45.89 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHccCCeEEEEeCCCCccccccc------cCCCCCCCceEEEEeechhhh
Q 045843 246 DQRADMISEELKDKSYVLFLDEVSTEINLRDI------GIHDEHKNGKVVFACIFRNIC 298 (913)
Q Consensus 246 ~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~------~~~~~~~~s~iivTTR~~~v~ 298 (913)
++..-.+.+..-.++-|-|||+.....|-+.. .......|..||.||..+-..
T Consensus 135 QqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 135 QQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred HHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 44444556666678999999999886554332 222677899999999876543
No 451
>PRK00625 shikimate kinase; Provisional
Probab=93.96 E-value=0.055 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988765
No 452
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.90 E-value=0.12 Score=46.36 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=32.7
Q ss_pred ccchHHHHHHHHHHH----hc---CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 162 VPSLNKHLKMLQECL----RN---VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L----~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
++|.+-..+.+++.+ .+ .+.-|++..|..|+|||.+++.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 457666666666555 22 345699999999999999999888763
No 453
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.89 E-value=0.11 Score=54.35 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCC
Q 045843 164 SLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDH 243 (913)
Q Consensus 164 gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~ 243 (913)
|...+..+.+..+......+|.|.|+.|.||||+++.+.+... ..-..++.+.-...+.... + .++... ..
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~--~~~~~iitiEdp~E~~~~~----~-~q~~v~--~~ 133 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN--TPEKNIITVEDPVEYQIPG----I-NQVQVN--EK 133 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC--CCCCeEEEECCCceecCCC----c-eEEEeC--Cc
Confidence 4444443333434344456899999999999999998876542 1111222222111111110 0 111111 11
Q ss_pred ChHHHHHHHHHHHccCCeEEEEeCCCCccccc
Q 045843 244 NIDQRADMISEELKDKSYVLFLDEVSTEINLR 275 (913)
Q Consensus 244 ~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~ 275 (913)
........++..++..+=.|+++++.+.+...
T Consensus 134 ~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 134 AGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred CCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 11235667778888889999999999976543
No 454
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.89 E-value=0.12 Score=53.93 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|.++|++|+||||+|+.+.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998765
No 455
>PTZ00035 Rad51 protein; Provisional
Probab=93.89 E-value=0.5 Score=51.39 Aligned_cols=90 Identities=13% Similarity=0.217 Sum_probs=55.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhccc---C-CCceEEEEEeCCCCCHHHHHHHHHHHccCCcc----------CCCh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGES---R-QFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----------DHNI 245 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~ 245 (913)
.-.++-|+|.+|+|||||+..++-..... . .=..++|+.....++.+++ .++++.++.... ..+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 34689999999999999999887554321 1 1235679988777887774 444555544321 1222
Q ss_pred HHHHHHH---HHHH-ccCCeEEEEeCCCC
Q 045843 246 DQRADMI---SEEL-KDKSYVLFLDEVST 270 (913)
Q Consensus 246 ~~~~~~l---~~~l-~~kr~LlVlDdv~~ 270 (913)
++....+ ...+ ..+--|||+|-+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 3333332 2233 24556899998764
No 456
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.88 E-value=0.34 Score=52.86 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=38.3
Q ss_pred HHHHHHHHHHccCCeEEEEeCCCCcccccc-------ccCCCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 247 QRADMISEELKDKSYVLFLDEVSTEINLRD-------IGIHDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 247 ~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~-------~~~~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
...-.|...|-.++-+|++|+..+..|... +.-.....|..||++|.+..++.. ++.++.|
T Consensus 146 kQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 146 KQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 334455667777889999999887654321 111122347789999988877655 5555444
No 457
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.87 E-value=0.28 Score=56.97 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=36.1
Q ss_pred HHHHHHHHHHccCCeEEEEeCCCCccccccc------cCCCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 247 QRADMISEELKDKSYVLFLDEVSTEINLRDI------GIHDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 247 ~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~------~~~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
...-.+...+-.++-+++||+.....|.... .......|..||++|.+...+.. ++.++.+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l 208 (490)
T PRK10938 141 TRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVL 208 (490)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEE
Confidence 3334455666677889999999886553321 10112236778888887655444 4555544
No 458
>PRK08149 ATP synthase SpaL; Validated
Probab=93.84 E-value=0.22 Score=55.30 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=55.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-CCHHHHHHHHHHHccCCc--------cCCCh-----
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE-GNIRDIQEVLLKRLDLRA--------EDHNI----- 245 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~--------~~~~~----- 245 (913)
+-..++|+|..|+|||||++.+++... -+..+...+... .++.++..+.+....... +....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 335889999999999999999986543 234444445443 456677666666433221 11111
Q ss_pred HHHHHHHHHHH--ccCCeEEEEeCCCCc
Q 045843 246 DQRADMISEEL--KDKSYVLFLDEVSTE 271 (913)
Q Consensus 246 ~~~~~~l~~~l--~~kr~LlVlDdv~~~ 271 (913)
....-.+.+++ ++|+.||++||+...
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 12233445555 489999999998763
No 459
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.83 E-value=0.0034 Score=61.33 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=74.2
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEE
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEIL 604 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L 604 (913)
..++....|+++.|.+..+-.. |+.++.|..||++.|.|.-+|..++.+..++.+++.. +....+|.+.+++++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchh
Confidence 4567889999998877666655 4778889999999999999999999999999999888 7789999999999999999
Q ss_pred ecCCCcC
Q 045843 605 DLSHTGI 611 (913)
Q Consensus 605 ~L~~~~~ 611 (913)
++.+|.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 9999876
No 460
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.82 E-value=0.19 Score=51.49 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=54.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CceEEEEEeCCCCCHHHHHHHHHHHccCCc----------------c-
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQ-FDFIFWVTVNSEGNIRDIQEVLLKRLDLRA----------------E- 241 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~----------------~- 241 (913)
.-.++.|.|.+|+|||++|.++....- .. =+.++||+..+. .+.+.+.+. +++... .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 456999999999999999998664443 23 345778887664 455554432 332210 1
Q ss_pred ----CCChHHHHHHHHHHHcc-CCeEEEEeCCCC
Q 045843 242 ----DHNIDQRADMISEELKD-KSYVLFLDEVST 270 (913)
Q Consensus 242 ----~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~ 270 (913)
..+.+.....+.+.++. +...+|+|.+..
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 23566777777777754 568999998654
No 461
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.82 E-value=0.66 Score=46.81 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.-.+++|+|..|.|||||++.+..-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999997543
No 462
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.81 E-value=0.31 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|.|||||.+.+....
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998653
No 463
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.79 E-value=0.046 Score=54.83 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 045843 183 RICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 464
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.78 E-value=0.61 Score=52.02 Aligned_cols=115 Identities=17% Similarity=0.264 Sum_probs=62.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC-----CCceE---------------EEEE-----eCCCCCHHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR-----QFDFI---------------FWVT-----VNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-----~F~~~---------------~wv~-----vs~~~~~~~i~~~i~~~ 235 (913)
-..|++||+.|+|||||.+.++-+..-.. +-..+ .|.. .-..-...+..+.|+..
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgr 495 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGR 495 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHH
Confidence 35899999999999999999987764311 11110 1100 00001234556677777
Q ss_pred ccCCccC--CCh------HHHHHHHHHHHccCCeEEEEeCCCCccccccccC---C-CCCCCceEEEEeechh
Q 045843 236 LDLRAED--HNI------DQRADMISEELKDKSYVLFLDEVSTEINLRDIGI---H-DEHKNGKVVFACIFRN 296 (913)
Q Consensus 236 l~~~~~~--~~~------~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~---~-~~~~~s~iivTTR~~~ 296 (913)
.+..... ..+ +...-......-..+-+||||+-.+..+-+.+.. . +.-.|. +|++|.+-.
T Consensus 496 fgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Gg-vv~vSHDfr 567 (614)
T KOG0927|consen 496 FGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGG-VVLVSHDFR 567 (614)
T ss_pred hCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCc-eeeeechhh
Confidence 7665322 111 1112222333446789999999988766554421 1 333444 555555543
No 465
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=93.78 E-value=0.36 Score=56.93 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|+|||||.+.+....
T Consensus 33 Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 33 GAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999999764
No 466
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.77 E-value=0.28 Score=50.90 Aligned_cols=92 Identities=16% Similarity=0.271 Sum_probs=55.4
Q ss_pred cEEEEECCCCCcHHHHH-HHHHHHhcccCCCceE-EEEEeCCC-CCHHHHHHHHHHHccCCc-------cCC-ChHH---
Q 045843 182 KRICIWGPPGVGKTTIM-ENLHDAIGESRQFDFI-FWVTVNSE-GNIRDIQEVLLKRLDLRA-------EDH-NIDQ--- 247 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~-~~~~~i~~~i~~~l~~~~-------~~~-~~~~--- 247 (913)
..++|+|..|+|||+|| ..+.+.. +-+.+ +++-+.+. .++.++.+.+.+.-.... .++ ....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 47899999999999996 6666543 22333 67777775 346677777765422111 111 1111
Q ss_pred --HHHHHHHHH--ccCCeEEEEeCCCCc-cccccc
Q 045843 248 --RADMISEEL--KDKSYVLFLDEVSTE-INLRDI 277 (913)
Q Consensus 248 --~~~~l~~~l--~~kr~LlVlDdv~~~-~~~~~~ 277 (913)
..-.+.+++ +++..|||+||+... ..+.++
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 123344544 479999999998764 334444
No 467
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=93.77 E-value=0.51 Score=51.92 Aligned_cols=125 Identities=15% Similarity=0.222 Sum_probs=68.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC---CCc------------------eEEEEEeCCCC------CHH-------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR---QFD------------------FIFWVTVNSEG------NIR------- 226 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~F~------------------~~~wv~vs~~~------~~~------- 226 (913)
-.+++|+|+.|+|||||.+.+..-..... .++ .+.+ +.+.+ ++.
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~--v~q~~~l~~~~tv~enl~~~~ 101 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGY--VFQDARLFPHYKVRGNLRYGM 101 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEE--EcCCcccCCCCcHHHHHHhhh
Confidence 35899999999999999999986532110 000 0111 11211 111
Q ss_pred -----HHHHHHHHHccCCc------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc-------ccCCCCCCCce
Q 045843 227 -----DIQEVLLKRLDLRA------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD-------IGIHDEHKNGK 287 (913)
Q Consensus 227 -----~i~~~i~~~l~~~~------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~-------~~~~~~~~~s~ 287 (913)
+-..++++.++... .. +.-+...-.+...+-.++-+++||+--...|... +.-.....|..
T Consensus 102 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~t 181 (352)
T PRK11144 102 AKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIP 181 (352)
T ss_pred hhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCe
Confidence 12234455555432 01 2223334456666777888999999877544221 11002233667
Q ss_pred EEEEeechhhhhc-CCceEEc
Q 045843 288 VVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 288 iivTTR~~~v~~~-~~~~~~l 307 (913)
||++|.+...+.. .+..+.+
T Consensus 182 ii~vTHd~~~~~~~~d~i~~l 202 (352)
T PRK11144 182 ILYVSHSLDEILRLADRVVVL 202 (352)
T ss_pred EEEEecCHHHHHHhCCEEEEE
Confidence 8888888765544 5555544
No 468
>PF13245 AAA_19: Part of AAA domain
Probab=93.76 E-value=0.17 Score=41.46 Aligned_cols=26 Identities=35% Similarity=0.751 Sum_probs=18.9
Q ss_pred CCcEEEEECCCCCcHH-HHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKT-TIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKT-tLa~~v~~~~ 205 (913)
+.+++.|.|++|.||| |+++.+..-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999 5555554444
No 469
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.75 E-value=0.34 Score=49.03 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=40.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEE-------EEeCCCCCHHHH--HHHHHHHccCCccC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFW-------VTVNSEGNIRDI--QEVLLKRLDLRAED 242 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~w-------v~vs~~~~~~~i--~~~i~~~l~~~~~~ 242 (913)
+...|.++||+|.||||..+.++.....++.-.-++- +....+.|+++. .++..++.+....+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 4558889999999999999999988874333222221 223333456555 45677776655433
No 470
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.73 E-value=0.11 Score=48.64 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=28.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS 221 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 221 (913)
++|.|+|+.|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 5899999999999999999999886 24455555555554
No 471
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.70 E-value=0.53 Score=48.61 Aligned_cols=127 Identities=18% Similarity=0.160 Sum_probs=66.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCC---------------CceEEEEEeCCC-C---CHH---------------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQ---------------FDFIFWVTVNSE-G---NIR--------------- 226 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~---------------F~~~~wv~vs~~-~---~~~--------------- 226 (913)
-.+++|+|..|.|||||++.+......... ...+.++.-... + ++.
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~ 104 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKK 104 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHH
Confidence 358999999999999999999765432110 011222221111 1 111
Q ss_pred ---HHHHHHHHHccCCc------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc-------ccCCCCCCCceEE
Q 045843 227 ---DIQEVLLKRLDLRA------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD-------IGIHDEHKNGKVV 289 (913)
Q Consensus 227 ---~i~~~i~~~l~~~~------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~-------~~~~~~~~~s~ii 289 (913)
+-..++++.++... .. +.-+...-.+...+-.++-++++|+.....|-.. +.......|..||
T Consensus 105 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~til 184 (235)
T cd03299 105 EIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVL 184 (235)
T ss_pred HHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 01123333443321 01 2223334455666667788999999887544221 1111223367788
Q ss_pred EEeechhhhhc-CCceEEc
Q 045843 290 FACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 290 vTTR~~~v~~~-~~~~~~l 307 (913)
++|.+...... .+.++.+
T Consensus 185 i~tH~~~~~~~~~d~i~~l 203 (235)
T cd03299 185 HVTHDFEEAWALADKVAIM 203 (235)
T ss_pred EEecCHHHHHHhCCEEEEE
Confidence 88877665443 4555444
No 472
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.70 E-value=0.38 Score=52.72 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=36.6
Q ss_pred HHHHHHHHHccCCeEEEEeCCCCcccccc-------ccCCCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 248 RADMISEELKDKSYVLFLDEVSTEINLRD-------IGIHDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 248 ~~~~l~~~l~~kr~LlVlDdv~~~~~~~~-------~~~~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
..-.+...+-.++-+|+||+.....|-.. +.--....|..||++|.+...... ++.++.+
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 33445666667888999999887544221 110022347788888888776554 5555444
No 473
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.70 E-value=0.3 Score=54.66 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=53.8
Q ss_pred cEEEEECCCCCcHHHHH-HHHHHHhcc-----cCCCceEEEEEeCCCCC-HHHHHHHHHHHcc-CCc-------cCC-Ch
Q 045843 182 KRICIWGPPGVGKTTIM-ENLHDAIGE-----SRQFDFIFWVTVNSEGN-IRDIQEVLLKRLD-LRA-------EDH-NI 245 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~-~~~-------~~~-~~ 245 (913)
..++|+|..|+|||+|| ..+.+...+ .++-+.++++.+.+..+ +.+ +.+.+++-+ ... .++ ..
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCCCHH
Confidence 47899999999999997 666766532 13446788888888654 344 333333333 111 111 11
Q ss_pred H-H----HHHHHHHHH--ccCCeEEEEeCCCC
Q 045843 246 D-Q----RADMISEEL--KDKSYVLFLDEVST 270 (913)
Q Consensus 246 ~-~----~~~~l~~~l--~~kr~LlVlDdv~~ 270 (913)
. - ..-.+.+++ +++..|||+||+..
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 1 123345555 47999999999875
No 474
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.68 E-value=0.26 Score=54.65 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=35.3
Q ss_pred cccchHHHHHHHHHHHh-------c----C-------CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 161 EVPSLNKHLKMLQECLR-------N----V-------GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~-------~----~-------~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.++|.+..++.+...+. . . ....+.++|++|+|||++|+.+.....
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 46899999888865551 1 1 125799999999999999999997664
No 475
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=93.67 E-value=0.44 Score=46.22 Aligned_cols=27 Identities=22% Similarity=0.323 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+-.|++|.|+.|.||||+.+.++.-..
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL~ 53 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLLI 53 (245)
T ss_pred cceEEEEEcCCCCCchhHHHHHHHhcc
Confidence 446999999999999999999997654
No 476
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.67 E-value=0.2 Score=55.92 Aligned_cols=89 Identities=12% Similarity=0.216 Sum_probs=59.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC-CHHHHHHHHHHHccCCc-------cCC-Ch-----HH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLRA-------EDH-NI-----DQ 247 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~-~~-----~~ 247 (913)
..++|.|..|+|||+|+.++..... +.+-+.++++-+.+.. .+.++.+++...-.... .+. .. -.
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 4789999999999999999887754 2334788888887764 46667777665321111 111 11 12
Q ss_pred HHHHHHHHHc---cCCeEEEEeCCCCc
Q 045843 248 RADMISEELK---DKSYVLFLDEVSTE 271 (913)
Q Consensus 248 ~~~~l~~~l~---~kr~LlVlDdv~~~ 271 (913)
..-.+.++++ +++.|+++||+...
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHHH
Confidence 2344567764 68999999998763
No 477
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=93.65 E-value=0.43 Score=52.82 Aligned_cols=127 Identities=14% Similarity=0.127 Sum_probs=68.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC---CCc------------eEEEEEeCC----CCCHH---------------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR---QFD------------FIFWVTVNS----EGNIR--------------- 226 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~F~------------~~~wv~vs~----~~~~~--------------- 226 (913)
-.+++|+|+.|+|||||.+.+..-..... .|+ .+.++.-.. ..++.
T Consensus 29 Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~ 108 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE 108 (369)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHH
Confidence 35899999999999999999986543110 010 122222110 01111
Q ss_pred ---HHHHHHHHHccCCc------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc-------ccCCCCCCCceEE
Q 045843 227 ---DIQEVLLKRLDLRA------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD-------IGIHDEHKNGKVV 289 (913)
Q Consensus 227 ---~i~~~i~~~l~~~~------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~-------~~~~~~~~~s~ii 289 (913)
+-..++++.++... .. +.-+...-.|...|-.++-+|+||+--...|... +.--....|..||
T Consensus 109 ~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI 188 (369)
T PRK11000 109 EINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188 (369)
T ss_pred HHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEE
Confidence 11233444444432 01 2223334456667777899999999887544321 1100123366788
Q ss_pred EEeechhhhhc-CCceEEc
Q 045843 290 FACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 290 vTTR~~~v~~~-~~~~~~l 307 (913)
++|.+...+.. ++.++.|
T Consensus 189 ~vTHd~~~~~~~~d~i~vl 207 (369)
T PRK11000 189 YVTHDQVEAMTLADKIVVL 207 (369)
T ss_pred EEeCCHHHHHHhCCEEEEE
Confidence 88887765444 5555544
No 478
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.65 E-value=0.26 Score=54.79 Aligned_cols=88 Identities=25% Similarity=0.393 Sum_probs=56.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC-CHHHHHHHHHHHccCCc-------cCCC-hH----
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLRA-------EDHN-ID---- 246 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~-~~---- 246 (913)
+-..++|+|..|+|||||.+.+++... -+..+++-+.+.. .+.++.+..+..-+... .+.. ..
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 345899999999999999999997654 3567788787753 45555555443322111 1111 11
Q ss_pred -HHHHHHHHHH--ccCCeEEEEeCCCCc
Q 045843 247 -QRADMISEEL--KDKSYVLFLDEVSTE 271 (913)
Q Consensus 247 -~~~~~l~~~l--~~kr~LlVlDdv~~~ 271 (913)
...-.+.+++ ++|+.|+++||+...
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1123355665 589999999998763
No 479
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.64 E-value=0.26 Score=55.39 Aligned_cols=90 Identities=10% Similarity=0.118 Sum_probs=58.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCC--ceEEEEEeCCC-CCHHHHHHHHHHHccCCc-------cC-CCh-----
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQF--DFIFWVTVNSE-GNIRDIQEVLLKRLDLRA-------ED-HNI----- 245 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~-------~~-~~~----- 245 (913)
..++|.|..|+|||||+.++.+.....+.+ ..++++-+.+. ..+.++.+.+...=.... .+ ...
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 478999999999999999999876543222 15677777665 456677777765432221 11 111
Q ss_pred HHHHHHHHHHHc---cCCeEEEEeCCCCc
Q 045843 246 DQRADMISEELK---DKSYVLFLDEVSTE 271 (913)
Q Consensus 246 ~~~~~~l~~~l~---~kr~LlVlDdv~~~ 271 (913)
-...-.+.++++ +++.||++||+...
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 112334567765 68899999998763
No 480
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.54 Score=47.21 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
-.+++|+|+.|+|||||++.+.....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 35999999999999999999987643
No 481
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.61 E-value=0.24 Score=55.02 Aligned_cols=87 Identities=24% Similarity=0.369 Sum_probs=52.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC-CCCHHHHHHHHHHHccCCc--------cCCChH-----
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS-EGNIRDIQEVLLKRLDLRA--------EDHNID----- 246 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~--------~~~~~~----- 246 (913)
-..++|+|..|+|||||++.+..... . +..+.+.+.+ ...+.++.+..+..-+... +.....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 35899999999999999998886543 2 2233333433 3445666665544422211 111111
Q ss_pred HHHHHHHHHH--ccCCeEEEEeCCCCc
Q 045843 247 QRADMISEEL--KDKSYVLFLDEVSTE 271 (913)
Q Consensus 247 ~~~~~l~~~l--~~kr~LlVlDdv~~~ 271 (913)
...-.+.+++ +++..||++||+...
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1223355666 479999999998763
No 482
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.59 E-value=0.11 Score=56.20 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=39.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.++..++|.+..++.+.-.+.+.+...+.+.|..|+||||+|+.+.+-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3456678999999888765655566679999999999999999997654
No 483
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.58 E-value=0.072 Score=52.07 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...|.++|++|+||||+|+.+.....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998874
No 484
>PRK04040 adenylate kinase; Provisional
Probab=93.58 E-value=0.062 Score=53.12 Aligned_cols=25 Identities=36% Similarity=0.662 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+|+|+|++|+||||+++.+.....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999988763
No 485
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.53 E-value=0.77 Score=45.12 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=22.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.+-.|.+++|+.|+||||+.+.+..-.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 456799999999999999999876543
No 486
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.48 E-value=0.34 Score=54.78 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=45.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC--HHHHHHHHHHHccCCccC-CChHHHHHHHHHHHc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN--IRDIQEVLLKRLDLRAED-HNIDQRADMISEELK 257 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~ 257 (913)
-.|++++|+.|+||||.+..++.....+..-..+..|.. +.+. ..+-++...+.++..... .+..+....+ ..++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~-Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT-DSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC-CccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 369999999999999999999876643222223444443 2232 233344444555443321 1212222222 2233
Q ss_pred cCCeEEEEeCCC
Q 045843 258 DKSYVLFLDEVS 269 (913)
Q Consensus 258 ~kr~LlVlDdv~ 269 (913)
++ ..+++|-.-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 33 466777754
No 487
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.47 E-value=0.21 Score=58.79 Aligned_cols=77 Identities=10% Similarity=0.209 Sum_probs=52.9
Q ss_pred cccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccC
Q 045843 159 MEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDL 238 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~ 238 (913)
..+++|.++.++.+...+.... .+.++|++|+||||+|+.+.+...- ..|...+++.-+. .+...+++.+..+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~-~~~~~~~~~~n~~-~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPD-EELEDILVYPNPE-DPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCc-hhheeEEEEeCCC-CCchHHHHHHHHhhch
Confidence 3467899998888877776553 5569999999999999999977752 2344444443332 2455667777776654
Q ss_pred C
Q 045843 239 R 239 (913)
Q Consensus 239 ~ 239 (913)
.
T Consensus 93 ~ 93 (608)
T TIGR00764 93 E 93 (608)
T ss_pred H
Confidence 3
No 488
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.47 E-value=0.13 Score=46.94 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=42.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc--CCChHHHHHHHHHHHcc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE--DHNIDQRADMISEELKD 258 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~~ 258 (913)
.+-|.|.|.+|+||||+|.++..... .-|+++|+-..-..+.. ....... --+.+.+.+.|...+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~~----gyDE~y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLYE----GYDEEYKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcchh----cccccccCccccHHHHHHHHHHHHhc
Confidence 45789999999999999999996654 34677766322211111 1111111 14566777777777655
Q ss_pred CCe
Q 045843 259 KSY 261 (913)
Q Consensus 259 kr~ 261 (913)
..+
T Consensus 76 Gg~ 78 (176)
T KOG3347|consen 76 GGN 78 (176)
T ss_pred CCc
Confidence 443
No 489
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.47 E-value=0.06 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 045843 183 RICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 490
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.47 E-value=0.3 Score=48.95 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=59.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh--cc-cCC--Cc--------------e-EEEEEeCCCCCH--HHHHHHHHHHccC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI--GE-SRQ--FD--------------F-IFWVTVNSEGNI--RDIQEVLLKRLDL 238 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~--~~-~~~--F~--------------~-~~wv~vs~~~~~--~~i~~~i~~~l~~ 238 (913)
-.+++|+|..|.|||||.+.+.... .. .+. |+ . +.+ +.+.+.. .....++++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~--v~q~~~~~~~~~~~~~l~~~~- 102 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL--AFQYPPEIPGVKNADFLRYVN- 102 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE--eecChhhccCccHHHHHhhcc-
Confidence 3599999999999999999998762 11 110 00 0 111 1222110 011111221111
Q ss_pred CccCCChHHHHHHHHHHHccCCeEEEEeCCCCccccc---cc---cCCCCCCCceEEEEeechhhhh
Q 045843 239 RAEDHNIDQRADMISEELKDKSYVLFLDEVSTEINLR---DI---GIHDEHKNGKVVFACIFRNICG 299 (913)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~---~~---~~~~~~~~s~iivTTR~~~v~~ 299 (913)
..-+.-+...-.+...+-.++-++++|+.....|-. .+ .......+..||++|.+.....
T Consensus 103 -~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 103 -EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 011223334445666677788899999988754422 11 0011223677888887766544
No 491
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.42 E-value=0.077 Score=51.15 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..++++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456999999999999999999998775
No 492
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.40 E-value=0.2 Score=52.65 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=41.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHH
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
+.-+++.|+|.+|+|||++|.++..... +....++||+..+ +.+++.+...+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e--~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEE--SPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecC--CHHHHHHHHHH
Confidence 3557999999999999999999888776 5688899999888 45555555544
No 493
>PRK06217 hypothetical protein; Validated
Probab=93.38 E-value=0.071 Score=52.65 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|.|.|++|+||||+|+.+.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998875
No 494
>PRK05973 replicative DNA helicase; Provisional
Probab=93.38 E-value=0.51 Score=48.22 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=34.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 232 (913)
.-.++.|.|.+|+|||++|.++..... .+-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHHH
Confidence 345889999999999999999876654 22345667766553 45555444
No 495
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.37 E-value=0.072 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+++|+|+.|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987754
No 496
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.37 E-value=0.12 Score=50.91 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=30.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEe
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTV 219 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 219 (913)
.+++.|+|+.|+|||||++.+..... ..|...+..+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeecc
Confidence 46899999999999999999998876 67755555443
No 497
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.37 E-value=0.27 Score=48.99 Aligned_cols=87 Identities=23% Similarity=0.382 Sum_probs=47.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCC--------ceEEEEEeCCCCCHHHHHHHHHHHccCCc-------------
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQF--------DFIFWVTVNSEGNIRDIQEVLLKRLDLRA------------- 240 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~i~~~i~~~l~~~~------------- 240 (913)
.++.|.|++|+||||++..+.........| ..++|+..... ...+.+.+........
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecccc
Confidence 488999999999999999988777543333 25667766554 3333333332221110
Q ss_pred ----------cCCChHHHHHHHHHHHcc--CCeEEEEeCCCC
Q 045843 241 ----------EDHNIDQRADMISEELKD--KSYVLFLDEVST 270 (913)
Q Consensus 241 ----------~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~ 270 (913)
.........+.+.+.+.. +.-++|+|.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~ 152 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQS 152 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHH
Confidence 001123445566666654 467999998765
No 498
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.37 E-value=0.43 Score=55.11 Aligned_cols=47 Identities=15% Similarity=0.351 Sum_probs=37.3
Q ss_pred cccccchHHHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 159 MEEVPSLNKHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+.+++|....+.++.+.+.. ..-.-|.|.|..|+||+++|+.+++.-
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 34578999888888877732 334578899999999999999998754
No 499
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.36 E-value=0.32 Score=52.13 Aligned_cols=87 Identities=22% Similarity=0.335 Sum_probs=53.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC-CCCHHHHHHHHHHHccCCc-------cCC-Ch-----H
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS-EGNIRDIQEVLLKRLDLRA-------EDH-NI-----D 246 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~-------~~~-~~-----~ 246 (913)
-..++|+|..|+|||||.+.+.+... -+..+...+.+ ..++.+.....+..-+... .+. .. .
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999886553 23344455543 3456666666655432211 111 11 1
Q ss_pred HHHHHHHHHH--ccCCeEEEEeCCCCc
Q 045843 247 QRADMISEEL--KDKSYVLFLDEVSTE 271 (913)
Q Consensus 247 ~~~~~l~~~l--~~kr~LlVlDdv~~~ 271 (913)
...-.+.+++ ++|..|+++||+...
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 1223344555 589999999998753
No 500
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.36 E-value=0.23 Score=49.66 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=24.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
....+|+|+|++|+||||+|+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999988663
Done!