Query 045843
Match_columns 913
No_of_seqs 467 out of 3931
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 10:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.8E-48 1.3E-52 451.6 17.3 306 163-485 131-470 (549)
2 1vt4_I APAF-1 related killer D 100.0 4.4E-40 1.5E-44 384.9 19.4 281 162-480 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 3.3E-38 1.1E-42 408.4 25.3 306 158-486 122-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.9E-34 6.5E-39 341.7 26.4 300 160-483 124-449 (591)
5 4fmz_A Internalin; leucine ric 99.9 1.9E-22 6.4E-27 222.2 20.1 306 501-893 39-346 (347)
6 1o6v_A Internalin A; bacterial 99.9 5.7E-22 1.9E-26 227.4 22.1 344 502-896 42-391 (466)
7 3o6n_A APL1; leucine-rich repe 99.9 1.9E-22 6.6E-27 225.8 17.8 302 506-893 45-352 (390)
8 2id5_A Lingo-1, leucine rich r 99.9 7.3E-22 2.5E-26 227.5 22.6 315 509-893 14-333 (477)
9 3t6q_A CD180 antigen; protein- 99.9 1.5E-21 5.1E-26 232.2 23.7 126 505-638 32-163 (606)
10 3vq2_A TLR4, TOLL-like recepto 99.9 1.8E-21 6.1E-26 231.5 23.4 108 506-614 56-168 (606)
11 3vq2_A TLR4, TOLL-like recepto 99.9 8.6E-22 2.9E-26 234.3 20.3 127 505-639 31-164 (606)
12 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-21 6.5E-26 226.7 22.1 107 774-893 372-481 (520)
13 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.1E-21 1.1E-25 226.9 23.1 121 508-639 33-157 (562)
14 3oja_B Anopheles plasmodium-re 99.9 1.1E-21 3.9E-26 231.9 19.3 301 507-893 52-358 (597)
15 4ecn_A Leucine-rich repeat pro 99.9 1.5E-21 5E-26 236.1 19.2 344 504-896 446-843 (876)
16 3v47_A TOLL-like receptor 5B a 99.9 1.2E-21 4E-26 224.5 16.4 341 506-894 30-409 (455)
17 1ziw_A TOLL-like receptor 3; i 99.9 2.6E-20 9E-25 224.6 27.3 125 506-638 25-155 (680)
18 3t6q_A CD180 antigen; protein- 99.9 2E-20 6.8E-25 222.5 25.6 111 504-615 55-169 (606)
19 2z63_A TOLL-like receptor 4, v 99.9 4.7E-21 1.6E-25 226.2 19.0 126 505-638 27-159 (570)
20 3rgz_A Protein brassinosteroid 99.9 4.8E-21 1.7E-25 233.3 19.6 361 506-893 178-551 (768)
21 4fmz_A Internalin; leucine ric 99.9 7.1E-21 2.4E-25 209.5 18.4 283 502-867 62-344 (347)
22 3o6n_A APL1; leucine-rich repe 99.9 1.2E-20 4.3E-25 211.1 20.6 289 525-896 42-334 (390)
23 2z63_A TOLL-like receptor 4, v 99.9 9.9E-21 3.4E-25 223.4 20.7 374 503-894 49-532 (570)
24 3rgz_A Protein brassinosteroid 99.9 6.6E-21 2.3E-25 232.1 19.6 113 506-618 269-388 (768)
25 4ecn_A Leucine-rich repeat pro 99.9 5.4E-21 1.8E-25 231.2 18.1 112 774-895 695-821 (876)
26 2id5_A Lingo-1, leucine rich r 99.9 4.6E-21 1.6E-25 220.8 16.8 296 505-867 31-331 (477)
27 4eco_A Uncharacterized protein 99.8 6.4E-21 2.2E-25 226.7 16.7 345 502-897 202-604 (636)
28 3bz5_A Internalin-J, INLJ; leu 99.8 2.7E-20 9.2E-25 211.7 20.1 121 501-638 37-158 (457)
29 4eco_A Uncharacterized protein 99.8 5.6E-21 1.9E-25 227.3 14.7 323 525-895 203-581 (636)
30 4fcg_A Uncharacterized protein 99.8 1.8E-20 6.2E-25 203.8 16.9 117 774-899 204-320 (328)
31 3oja_B Anopheles plasmodium-re 99.8 3.7E-20 1.3E-24 218.9 20.9 289 525-896 48-340 (597)
32 3j0a_A TOLL-like receptor 5; m 99.8 5.3E-20 1.8E-24 226.5 22.5 128 504-638 22-158 (844)
33 1o6v_A Internalin A; bacterial 99.8 4.9E-20 1.7E-24 211.2 20.1 321 526-894 44-367 (466)
34 2z81_A CD282 antigen, TOLL-lik 99.8 3.6E-20 1.2E-24 217.5 18.3 127 506-640 26-160 (549)
35 2z81_A CD282 antigen, TOLL-lik 99.8 8.2E-20 2.8E-24 214.4 21.3 365 511-894 10-424 (549)
36 1ziw_A TOLL-like receptor 3; i 99.8 2.3E-19 7.8E-24 216.4 25.1 107 506-612 49-158 (680)
37 2ft3_A Biglycan; proteoglycan, 99.8 4E-19 1.4E-23 194.1 19.6 121 507-638 34-157 (332)
38 1xku_A Decorin; proteoglycan, 99.8 7E-19 2.4E-23 192.0 21.5 287 507-890 32-329 (330)
39 3v47_A TOLL-like receptor 5B a 99.8 2.2E-19 7.4E-24 205.5 18.0 347 510-896 14-387 (455)
40 4g8a_A TOLL-like receptor 4; l 99.8 9.6E-19 3.3E-23 209.2 23.1 115 506-621 52-173 (635)
41 3j0a_A TOLL-like receptor 5; m 99.8 5E-19 1.7E-23 217.9 19.6 336 510-895 8-396 (844)
42 4fcg_A Uncharacterized protein 99.8 5.7E-19 2E-23 191.9 15.3 219 528-840 81-310 (328)
43 3bz5_A Internalin-J, INLJ; leu 99.8 2.3E-18 7.7E-23 195.8 18.9 298 525-895 39-354 (457)
44 2z7x_B TOLL-like receptor 1, v 99.8 4.1E-18 1.4E-22 198.4 17.9 347 508-896 2-460 (520)
45 3g06_A SSPH2 (leucine-rich rep 99.8 3.3E-18 1.1E-22 200.2 16.1 262 507-874 41-302 (622)
46 1xku_A Decorin; proteoglycan, 99.8 2.2E-17 7.4E-22 180.1 21.0 269 528-896 31-309 (330)
47 1ogq_A PGIP-2, polygalacturona 99.8 2.1E-18 7.1E-23 186.4 12.7 103 528-638 50-159 (313)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.6E-18 3.3E-22 197.1 18.7 106 525-642 28-135 (562)
49 2z80_A TOLL-like receptor 2, v 99.7 1.3E-17 4.5E-22 183.6 18.1 119 511-638 36-159 (353)
50 2z80_A TOLL-like receptor 2, v 99.7 2.9E-17 9.7E-22 181.0 19.2 277 525-893 28-314 (353)
51 1jl5_A Outer protein YOPM; leu 99.7 7E-17 2.4E-21 183.4 22.4 303 506-894 91-410 (454)
52 2z66_A Variable lymphocyte rec 99.7 1.4E-17 4.8E-22 179.5 15.7 121 509-638 10-136 (306)
53 3zyi_A Leucine-rich repeat-con 99.7 3.8E-17 1.3E-21 186.4 20.1 241 509-842 57-301 (452)
54 1ogq_A PGIP-2, polygalacturona 99.7 6.7E-18 2.3E-22 182.4 11.9 249 506-846 50-306 (313)
55 3zyj_A Leucine-rich repeat-con 99.7 5.9E-17 2E-21 184.1 20.0 242 508-842 45-290 (440)
56 4g8a_A TOLL-like receptor 4; l 99.7 1.2E-16 4E-21 191.0 22.3 118 512-638 37-158 (635)
57 1jl5_A Outer protein YOPM; leu 99.7 9.9E-17 3.4E-21 182.1 20.1 291 506-877 111-419 (454)
58 1ozn_A Reticulon 4 receptor; N 99.7 4.2E-17 1.4E-21 173.8 15.5 221 509-815 14-238 (285)
59 3zyi_A Leucine-rich repeat-con 99.7 6.1E-17 2.1E-21 184.7 17.2 221 505-813 74-301 (452)
60 3g06_A SSPH2 (leucine-rich rep 99.7 7.8E-17 2.7E-21 188.6 18.3 259 528-894 40-298 (622)
61 3zyj_A Leucine-rich repeat-con 99.7 7.7E-17 2.6E-21 183.1 17.6 221 505-813 63-290 (440)
62 2ft3_A Biglycan; proteoglycan, 99.7 7E-17 2.4E-21 176.2 16.4 270 505-867 53-331 (332)
63 2z66_A Variable lymphocyte rec 99.7 2.2E-16 7.6E-21 170.1 16.6 244 531-867 10-259 (306)
64 3o53_A Protein LRIM1, AGAP0063 99.7 8.5E-18 2.9E-22 182.1 5.0 248 526-874 32-280 (317)
65 3o53_A Protein LRIM1, AGAP0063 99.7 1.7E-16 5.9E-21 171.7 10.3 262 506-870 34-300 (317)
66 3oja_A Leucine-rich immune mol 99.7 1.2E-16 4E-21 183.4 9.3 239 525-864 31-270 (487)
67 1ozn_A Reticulon 4 receptor; N 99.6 2.5E-15 8.6E-20 160.0 13.3 199 505-787 31-236 (285)
68 3oja_A Leucine-rich immune mol 99.6 8.3E-16 2.8E-20 176.3 8.5 235 551-888 33-270 (487)
69 1wwl_A Monocyte differentiatio 99.6 1E-15 3.6E-20 165.2 7.7 110 774-894 199-310 (312)
70 4ay9_X Follicle-stimulating ho 99.6 8.2E-15 2.8E-19 160.9 14.2 106 510-616 13-121 (350)
71 1w5s_A Origin recognition comp 99.6 4E-14 1.4E-18 159.4 19.1 291 160-463 22-371 (412)
72 2qen_A Walker-type ATPase; unk 99.6 1.8E-13 6.2E-18 150.3 23.6 285 159-479 11-348 (350)
73 1h6u_A Internalin H; cell adhe 99.6 1E-14 3.4E-19 156.9 12.5 101 525-638 38-139 (308)
74 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.7E-19 159.1 12.9 99 531-639 12-115 (350)
75 2xwt_C Thyrotropin receptor; s 99.5 1.6E-14 5.6E-19 149.3 12.5 98 517-616 22-122 (239)
76 2xwt_C Thyrotropin receptor; s 99.5 1.6E-14 5.5E-19 149.4 12.3 210 539-814 22-238 (239)
77 3rfs_A Internalin B, repeat mo 99.5 2.3E-14 7.9E-19 151.2 12.6 121 507-638 20-143 (272)
78 1z7x_W Ribonuclease inhibitor; 99.5 2.8E-16 9.5E-21 180.0 -2.5 349 505-893 27-440 (461)
79 2z62_A TOLL-like receptor 4, v 99.5 8.1E-14 2.8E-18 147.5 16.2 214 513-813 14-235 (276)
80 2o6q_A Variable lymphocyte rec 99.5 1E-13 3.4E-18 146.2 16.1 107 508-616 18-126 (270)
81 2ast_B S-phase kinase-associat 99.5 4.3E-15 1.5E-19 162.3 5.3 255 529-876 48-313 (336)
82 2fna_A Conserved hypothetical 99.5 7.5E-13 2.6E-17 145.7 22.2 283 159-479 12-356 (357)
83 2o6q_A Variable lymphocyte rec 99.5 1.5E-13 5.2E-18 144.8 15.7 98 530-638 18-119 (270)
84 1wwl_A Monocyte differentiatio 99.5 5.9E-15 2E-19 159.3 4.9 81 774-866 226-306 (312)
85 3ogk_B Coronatine-insensitive 99.5 1.1E-14 3.7E-19 172.4 7.6 143 718-871 375-527 (592)
86 3rfs_A Internalin B, repeat mo 99.5 8.4E-14 2.9E-18 146.9 13.6 128 501-638 36-167 (272)
87 1p9a_G Platelet glycoprotein I 99.5 1.8E-13 6.1E-18 145.6 15.0 123 506-638 10-134 (290)
88 1h6u_A Internalin H; cell adhe 99.5 1.4E-13 4.6E-18 148.1 14.0 126 501-638 36-161 (308)
89 1p9a_G Platelet glycoprotein I 99.5 2.2E-13 7.4E-18 145.0 15.0 198 525-813 7-206 (290)
90 3ogk_B Coronatine-insensitive 99.5 4.3E-14 1.5E-18 167.3 8.7 164 718-893 339-526 (592)
91 3qfl_A MLA10; coiled-coil, (CC 99.5 3.8E-13 1.3E-17 119.3 11.9 81 15-105 1-83 (115)
92 1z7x_W Ribonuclease inhibitor; 99.4 3.1E-15 1E-19 171.3 -2.7 346 506-893 3-411 (461)
93 2z62_A TOLL-like receptor 4, v 99.4 4.9E-13 1.7E-17 141.5 14.2 125 506-638 28-159 (276)
94 3m19_A Variable lymphocyte rec 99.4 2.1E-12 7.1E-17 134.4 16.2 123 507-638 15-141 (251)
95 2ast_B S-phase kinase-associat 99.4 5.6E-14 1.9E-18 153.4 4.4 251 552-895 47-308 (336)
96 2p1m_B Transport inhibitor res 99.4 3.2E-14 1.1E-18 168.5 0.8 366 506-892 105-518 (594)
97 1h6t_A Internalin B; cell adhe 99.4 6.6E-13 2.3E-17 141.4 10.6 119 508-638 26-144 (291)
98 2ca6_A RAN GTPase-activating p 99.4 2E-13 6.9E-18 152.1 5.1 133 721-867 159-314 (386)
99 1m9s_A Internalin B; cell inva 99.4 8.5E-13 2.9E-17 154.3 9.7 101 509-614 24-124 (605)
100 2p1m_B Transport inhibitor res 99.4 1.3E-13 4.5E-18 163.1 2.7 139 719-868 370-518 (594)
101 2ca6_A RAN GTPase-activating p 99.3 4.3E-13 1.5E-17 149.5 5.5 242 525-842 29-314 (386)
102 2qby_B CDC6 homolog 3, cell di 99.3 6.6E-11 2.3E-15 131.6 23.0 284 160-463 20-339 (384)
103 1h6t_A Internalin B; cell adhe 99.3 5.3E-12 1.8E-16 134.3 13.3 125 501-638 41-166 (291)
104 3e6j_A Variable lymphocyte rec 99.3 5.8E-12 2E-16 128.9 12.0 125 506-638 40-169 (229)
105 4glp_A Monocyte differentiatio 99.3 4.6E-13 1.6E-17 144.2 3.9 102 528-638 64-179 (310)
106 2v1u_A Cell division control p 99.3 4.6E-11 1.6E-15 133.0 19.6 285 160-463 19-351 (387)
107 3m19_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 128.0 14.1 125 506-638 35-165 (251)
108 1m9s_A Internalin B; cell inva 99.3 1.1E-11 3.6E-16 145.0 12.9 125 501-638 38-163 (605)
109 4ezg_A Putative uncharacterize 99.3 1.7E-11 5.7E-16 122.3 12.3 132 501-642 39-173 (197)
110 4glp_A Monocyte differentiatio 99.3 9.2E-12 3.1E-16 134.0 11.1 159 719-893 143-307 (310)
111 2v9t_B SLIT homolog 2 protein 99.3 2.1E-11 7.1E-16 123.9 12.9 121 509-638 14-138 (220)
112 3e6j_A Variable lymphocyte rec 99.3 2.8E-11 9.5E-16 123.8 13.9 122 508-638 21-145 (229)
113 1fnn_A CDC6P, cell division co 99.3 1E-09 3.4E-14 122.2 27.3 284 160-463 17-351 (389)
114 3goz_A Leucine-rich repeat-con 99.3 5.1E-12 1.7E-16 139.3 7.8 88 527-615 21-125 (362)
115 2qby_A CDC6 homolog 1, cell di 99.3 2.3E-10 8E-15 127.2 21.4 284 160-462 20-347 (386)
116 3goz_A Leucine-rich repeat-con 99.3 5.9E-12 2E-16 138.7 8.2 98 533-638 3-119 (362)
117 3cvr_A Invasion plasmid antige 99.2 2.7E-11 9.3E-16 139.9 13.4 111 507-638 60-170 (571)
118 2v9t_B SLIT homolog 2 protein 99.2 1.9E-11 6.6E-16 124.1 10.6 125 506-638 32-162 (220)
119 2o6s_A Variable lymphocyte rec 99.2 4.1E-11 1.4E-15 120.6 13.0 121 509-638 10-134 (208)
120 2o6s_A Variable lymphocyte rec 99.2 3E-11 1E-15 121.7 11.5 126 505-638 27-158 (208)
121 2je0_A Acidic leucine-rich nuc 99.2 1.4E-11 4.9E-16 116.7 7.7 122 505-636 16-148 (149)
122 2v70_A SLIT-2, SLIT homolog 2 99.2 6.7E-11 2.3E-15 120.1 13.2 121 509-638 14-139 (220)
123 2ell_A Acidic leucine-rich nuc 99.2 1.6E-11 5.5E-16 119.0 7.8 124 506-639 24-158 (168)
124 3cvr_A Invasion plasmid antige 99.2 7.3E-11 2.5E-15 136.3 14.2 92 528-638 59-150 (571)
125 2v70_A SLIT-2, SLIT homolog 2 99.2 3.5E-11 1.2E-15 122.2 9.7 125 506-638 32-163 (220)
126 4ezg_A Putative uncharacterize 99.2 3.1E-11 1E-15 120.4 9.0 128 502-638 62-191 (197)
127 1a9n_A U2A', U2A'; complex (nu 99.2 2.1E-11 7.1E-16 119.2 6.8 123 506-638 19-150 (176)
128 1xeu_A Internalin C; cellular 99.2 2.9E-11 9.8E-16 126.5 7.7 118 507-638 20-138 (263)
129 1xeu_A Internalin C; cellular 99.2 1.8E-10 6.2E-15 120.4 13.3 127 502-642 37-164 (263)
130 1njg_A DNA polymerase III subu 99.1 8.3E-10 2.8E-14 114.0 16.9 192 158-358 21-231 (250)
131 2o6r_A Variable lymphocyte rec 99.1 2E-10 7E-15 112.2 11.5 122 508-638 9-134 (177)
132 2wfh_A SLIT homolog 2 protein 99.1 2.7E-10 9.1E-15 112.9 12.3 120 509-638 13-136 (193)
133 1dce_A Protein (RAB geranylger 99.1 1.3E-10 4.4E-15 135.1 11.4 118 507-634 442-566 (567)
134 1w8a_A SLIT protein; signaling 99.1 1.6E-10 5.3E-15 114.6 10.3 121 509-638 11-136 (192)
135 2ell_A Acidic leucine-rich nuc 99.1 2.1E-10 7.3E-15 111.0 10.1 114 503-617 46-165 (168)
136 2chg_A Replication factor C sm 99.1 1.7E-09 5.7E-14 110.0 17.2 185 157-357 14-206 (226)
137 2r9u_A Variable lymphocyte rec 99.1 2.4E-10 8.4E-15 111.1 9.7 108 509-618 15-124 (174)
138 2xot_A Amphoterin-induced prot 99.1 2.1E-10 7.1E-15 126.2 10.2 121 509-638 21-146 (361)
139 3sb4_A Hypothetical leucine ri 99.1 2.9E-10 9.9E-15 123.3 10.1 103 774-887 224-328 (329)
140 4b8c_D Glucose-repressible alc 99.1 2.2E-10 7.4E-15 137.5 9.5 104 506-611 224-328 (727)
141 2xot_A Amphoterin-induced prot 99.0 3.1E-10 1E-14 124.8 9.7 126 505-638 38-173 (361)
142 3g39_A Variable lymphocyte rec 99.0 5.7E-10 1.9E-14 108.1 9.7 107 508-616 11-119 (170)
143 2wfh_A SLIT homolog 2 protein 99.0 5.5E-10 1.9E-14 110.7 8.7 106 505-611 30-138 (193)
144 1hqc_A RUVB; extended AAA-ATPa 99.0 8E-09 2.8E-13 111.7 18.5 269 158-462 10-324 (324)
145 1a9n_A U2A', U2A'; complex (nu 99.0 3.5E-10 1.2E-14 110.4 6.8 104 507-611 43-152 (176)
146 1w8a_A SLIT protein; signaling 99.0 6.2E-10 2.1E-14 110.3 8.6 105 506-611 29-138 (192)
147 4b8c_D Glucose-repressible alc 99.0 1.2E-09 4.3E-14 130.9 12.0 124 506-638 173-303 (727)
148 2o6r_A Variable lymphocyte rec 99.0 1.6E-09 5.5E-14 105.8 9.7 107 505-612 27-137 (177)
149 1dce_A Protein (RAB geranylger 98.9 4.4E-10 1.5E-14 130.5 5.8 117 507-638 424-543 (567)
150 2je0_A Acidic leucine-rich nuc 98.9 1.6E-09 5.6E-14 102.4 8.5 105 503-608 39-149 (149)
151 1sxj_B Activator 1 37 kDa subu 98.9 1.4E-08 4.7E-13 109.7 14.9 185 157-357 18-212 (323)
152 2r9u_A Variable lymphocyte rec 98.8 7E-09 2.4E-13 100.7 8.6 98 530-638 14-115 (174)
153 3g39_A Variable lymphocyte rec 98.8 7.4E-09 2.5E-13 100.1 8.5 99 529-638 10-112 (170)
154 1ds9_A Outer arm dynein; leuci 98.8 2.9E-10 9.8E-15 113.4 -3.0 105 504-611 46-152 (198)
155 1ds9_A Outer arm dynein; leuci 98.7 3.9E-10 1.3E-14 112.4 -4.3 103 525-638 45-150 (198)
156 1iqp_A RFCS; clamp loader, ext 98.7 1.1E-07 3.7E-12 102.8 14.7 180 158-359 23-216 (327)
157 3sb4_A Hypothetical leucine ri 98.7 2.4E-08 8.4E-13 108.0 8.7 103 720-838 225-328 (329)
158 4fdw_A Leucine rich hypothetic 98.7 4.2E-07 1.4E-11 100.7 18.8 263 527-894 112-384 (401)
159 2ifg_A High affinity nerve gro 98.6 5.5E-08 1.9E-12 106.2 9.2 102 510-612 12-116 (347)
160 3te6_A Regulatory protein SIR3 98.6 5.8E-07 2E-11 94.8 16.4 163 162-324 22-212 (318)
161 2ifg_A High affinity nerve gro 98.5 2.2E-07 7.4E-12 101.4 9.3 98 531-638 11-113 (347)
162 2chq_A Replication factor C sm 98.5 9.5E-07 3.2E-11 95.0 13.8 180 158-357 15-206 (319)
163 4fdw_A Leucine rich hypothetic 98.5 1.2E-06 3.9E-11 97.1 14.6 246 518-840 124-379 (401)
164 1jbk_A CLPB protein; beta barr 98.4 6.4E-07 2.2E-11 88.2 9.7 149 158-319 20-194 (195)
165 4fs7_A Uncharacterized protein 98.4 4.9E-06 1.7E-10 92.3 17.5 296 525-885 68-393 (394)
166 1jr3_A DNA polymerase III subu 98.4 3.4E-06 1.2E-10 92.8 15.9 188 158-355 14-221 (373)
167 1sxj_A Activator 1 95 kDa subu 98.3 2.1E-06 7E-11 98.6 12.7 205 157-372 36-272 (516)
168 3pvs_A Replication-associated 98.3 1.2E-05 4.1E-10 89.8 18.3 175 156-355 22-215 (447)
169 3h4m_A Proteasome-activating n 98.3 5.1E-06 1.7E-10 87.6 13.9 177 154-353 11-229 (285)
170 3bos_A Putative DNA replicatio 98.3 2.1E-06 7.2E-11 88.0 10.2 171 157-355 25-217 (242)
171 2z4s_A Chromosomal replication 98.3 2.3E-06 7.7E-11 95.9 11.1 198 159-374 104-332 (440)
172 3b9p_A CG5977-PA, isoform A; A 98.2 5.1E-05 1.7E-09 80.4 19.4 177 156-354 17-232 (297)
173 2qz4_A Paraplegin; AAA+, SPG7, 98.2 4.6E-05 1.6E-09 79.0 18.2 178 158-355 4-222 (262)
174 1sxj_D Activator 1 41 kDa subu 98.2 6.2E-06 2.1E-10 89.9 11.9 192 158-355 35-235 (353)
175 3eie_A Vacuolar protein sortin 98.2 5.3E-05 1.8E-09 81.2 18.8 181 153-355 11-228 (322)
176 3e4g_A ATP synthase subunit S, 98.2 5.9E-07 2E-11 85.5 2.5 63 750-816 62-128 (176)
177 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00011 3.6E-09 78.6 20.3 181 155-356 7-224 (322)
178 3pfi_A Holliday junction ATP-d 98.1 0.00025 8.5E-09 76.6 23.5 169 158-355 27-227 (338)
179 1sxj_E Activator 1 40 kDa subu 98.1 1.1E-05 3.9E-10 87.9 12.5 192 158-356 12-238 (354)
180 4fs7_A Uncharacterized protein 98.1 9.4E-05 3.2E-09 81.9 19.7 292 539-890 58-376 (394)
181 3d8b_A Fidgetin-like protein 1 98.1 5.5E-05 1.9E-09 82.3 16.8 178 157-356 81-296 (357)
182 3uk6_A RUVB-like 2; hexameric 98.1 2.7E-05 9.3E-10 85.4 14.5 194 155-353 39-301 (368)
183 1d2n_A N-ethylmaleimide-sensit 98.1 3.2E-05 1.1E-09 80.8 13.7 188 162-375 35-262 (272)
184 2qp9_X Vacuolar protein sortin 98.0 0.00017 5.6E-09 78.3 18.7 179 156-355 47-261 (355)
185 3vfd_A Spastin; ATPase, microt 98.0 0.00014 4.7E-09 80.2 18.2 180 155-355 110-326 (389)
186 3syl_A Protein CBBX; photosynt 98.0 2E-05 6.8E-10 84.1 10.5 149 161-324 32-218 (309)
187 3cf0_A Transitional endoplasmi 98.0 0.00018 6.1E-09 76.2 17.6 172 154-348 9-221 (301)
188 2zan_A Vacuolar protein sortin 98.0 0.0002 6.9E-09 80.1 18.5 181 155-355 129-345 (444)
189 1sxj_C Activator 1 40 kDa subu 97.9 9.3E-05 3.2E-09 80.0 14.8 172 157-351 22-208 (340)
190 2p65_A Hypothetical protein PF 97.9 1.5E-05 5.2E-10 77.7 7.5 49 158-206 20-68 (187)
191 3u61_B DNA polymerase accessor 97.9 0.00012 4.1E-09 78.6 14.8 169 157-352 23-213 (324)
192 3e4g_A ATP synthase subunit S, 97.9 8.1E-06 2.8E-10 77.7 4.6 38 777-815 115-152 (176)
193 4b4t_J 26S protease regulatory 97.9 0.00031 1E-08 75.9 17.4 170 154-347 142-353 (405)
194 1l8q_A Chromosomal replication 97.9 9.5E-05 3.3E-09 79.3 13.5 162 167-349 21-202 (324)
195 2ra8_A Uncharacterized protein 97.9 6.9E-06 2.4E-10 89.1 4.2 13 801-813 251-263 (362)
196 4b4t_H 26S protease regulatory 97.8 0.00035 1.2E-08 76.4 16.4 170 155-347 204-414 (467)
197 1a5t_A Delta prime, HOLB; zinc 97.8 0.00047 1.6E-08 74.1 17.3 166 165-354 7-204 (334)
198 3pxg_A Negative regulator of g 97.8 0.00017 5.8E-09 81.3 14.2 148 158-325 178-340 (468)
199 1in4_A RUVB, holliday junction 97.8 0.00056 1.9E-08 73.5 17.7 190 157-375 22-251 (334)
200 3ec2_A DNA replication protein 97.8 3E-05 1E-09 75.3 6.7 115 165-295 19-143 (180)
201 3un9_A NLR family member X1; l 97.8 3.4E-06 1.2E-10 92.4 -0.3 124 507-638 102-249 (372)
202 4b4t_L 26S protease subunit RP 97.7 0.0005 1.7E-08 75.5 16.7 170 154-347 175-386 (437)
203 2w58_A DNAI, primosome compone 97.7 5.3E-05 1.8E-09 75.1 8.3 112 166-294 35-158 (202)
204 4b4t_I 26S protease regulatory 97.7 0.00044 1.5E-08 74.9 15.5 170 154-347 176-387 (437)
205 4b4t_M 26S protease regulatory 97.7 0.00029 9.9E-09 77.3 13.3 170 154-347 175-386 (434)
206 3rw6_A Nuclear RNA export fact 97.6 6.3E-05 2.1E-09 77.3 7.2 65 549-615 167-237 (267)
207 1lv7_A FTSH; alpha/beta domain 97.6 0.00092 3.2E-08 68.9 16.1 174 156-352 8-222 (257)
208 4gt6_A Cell surface protein; l 97.6 0.00097 3.3E-08 73.6 17.0 81 774-865 286-366 (394)
209 4b4t_K 26S protease regulatory 97.6 0.00029 9.8E-09 77.3 12.3 171 154-347 166-378 (428)
210 3pxi_A Negative regulator of g 97.6 0.00033 1.1E-08 84.4 14.1 150 158-325 178-340 (758)
211 3un9_A NLR family member X1; l 97.6 2.8E-05 9.6E-10 85.0 3.2 107 505-612 125-252 (372)
212 1qvr_A CLPB protein; coiled co 97.5 0.00048 1.6E-08 84.0 13.6 153 158-323 168-345 (854)
213 3hu3_A Transitional endoplasmi 97.5 0.00093 3.2E-08 75.2 14.8 174 158-354 202-414 (489)
214 4gt6_A Cell surface protein; l 97.5 0.0019 6.3E-08 71.3 17.0 103 774-889 263-366 (394)
215 3rw6_A Nuclear RNA export fact 97.5 3.8E-05 1.3E-09 78.8 2.7 81 525-606 167-258 (267)
216 2ra8_A Uncharacterized protein 97.5 0.00011 3.9E-09 79.5 6.5 127 504-638 170-317 (362)
217 2ce7_A Cell division protein F 97.4 0.0016 5.6E-08 72.6 14.4 169 157-348 13-221 (476)
218 3n70_A Transport activator; si 97.4 0.00026 8.8E-09 65.8 6.7 45 161-205 2-48 (145)
219 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0013 4.6E-08 79.2 14.7 153 158-323 184-362 (758)
220 1io0_A Tropomodulin; LRR prote 97.3 0.0001 3.4E-09 71.9 3.2 84 527-611 64-163 (185)
221 1io0_A Tropomodulin; LRR prote 97.2 0.00014 4.9E-09 70.8 3.7 106 525-638 33-161 (185)
222 2gno_A DNA polymerase III, gam 97.2 0.0021 7.2E-08 67.7 12.9 142 164-323 1-152 (305)
223 2r62_A Cell division protease 97.2 0.00022 7.7E-09 74.1 5.1 149 158-325 9-198 (268)
224 1ofh_A ATP-dependent HSL prote 97.2 0.0018 6.2E-08 68.7 11.7 46 161-206 16-75 (310)
225 3co5_A Putative two-component 97.1 0.00026 8.9E-09 65.6 3.9 45 161-205 5-51 (143)
226 4fcw_A Chaperone protein CLPB; 97.1 0.0013 4.3E-08 70.0 9.4 103 162-271 19-131 (311)
227 2bjv_A PSP operon transcriptio 97.0 0.0014 4.7E-08 67.9 8.8 48 159-206 5-54 (265)
228 2kjq_A DNAA-related protein; s 97.0 0.00042 1.4E-08 64.6 4.4 40 180-221 35-74 (149)
229 1ojl_A Transcriptional regulat 97.0 0.0028 9.4E-08 66.9 11.1 45 161-205 3-49 (304)
230 3cf2_A TER ATPase, transitiona 97.0 0.0043 1.5E-07 73.4 13.6 168 158-348 202-407 (806)
231 4h09_A Hypothetical leucine ri 97.0 0.02 7E-07 62.5 18.2 136 717-874 213-349 (379)
232 1ixz_A ATP-dependent metallopr 96.8 0.016 5.5E-07 59.3 15.0 169 155-347 11-220 (254)
233 2x8a_A Nuclear valosin-contain 96.8 0.018 6.2E-07 59.5 15.4 149 156-324 6-192 (274)
234 2c9o_A RUVB-like 1; hexameric 96.7 0.012 4.3E-07 65.8 14.2 49 158-206 35-88 (456)
235 4h09_A Hypothetical leucine ri 96.7 0.084 2.9E-06 57.5 20.5 105 717-839 236-341 (379)
236 3t15_A Ribulose bisphosphate c 96.7 0.014 4.9E-07 61.0 13.6 26 181-206 36-61 (293)
237 1iy2_A ATP-dependent metallopr 96.7 0.026 9E-07 58.6 15.2 170 155-348 35-245 (278)
238 2dhr_A FTSH; AAA+ protein, hex 96.6 0.033 1.1E-06 62.5 16.4 166 156-348 27-236 (499)
239 1ypw_A Transitional endoplasmi 96.6 0.011 3.7E-07 71.1 13.3 149 158-325 202-387 (806)
240 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0013 4.5E-08 68.4 4.5 69 182-271 124-194 (331)
241 2cvh_A DNA repair and recombin 96.6 0.0064 2.2E-07 60.6 9.5 85 181-271 20-117 (220)
242 3pxi_A Negative regulator of g 96.6 0.0044 1.5E-07 74.5 9.6 141 161-322 492-674 (758)
243 3m6a_A ATP-dependent protease 96.4 0.019 6.5E-07 65.7 13.2 46 161-206 82-133 (543)
244 1n0w_A DNA repair protein RAD5 96.2 0.028 9.7E-07 56.8 11.7 90 181-271 24-131 (243)
245 3hr8_A Protein RECA; alpha and 96.1 0.017 5.7E-07 61.8 9.9 85 181-272 61-152 (356)
246 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.013 4.4E-07 58.9 8.6 109 182-295 24-168 (235)
247 2qgz_A Helicase loader, putati 95.9 0.016 5.3E-07 61.2 8.1 42 165-206 133-177 (308)
248 4a74_A DNA repair and recombin 95.8 0.014 4.7E-07 58.6 7.4 90 181-271 25-137 (231)
249 1v5w_A DMC1, meiotic recombina 95.7 0.047 1.6E-06 58.5 11.4 89 181-270 122-230 (343)
250 2pze_A Cystic fibrosis transme 95.7 0.088 3E-06 52.7 12.4 124 181-307 34-202 (229)
251 3io5_A Recombination and repai 95.6 0.049 1.7E-06 56.4 10.2 84 183-271 30-123 (333)
252 2zr9_A Protein RECA, recombina 95.6 0.039 1.3E-06 59.1 9.9 85 180-271 60-151 (349)
253 2z43_A DNA repair and recombin 95.6 0.034 1.1E-06 59.2 9.3 89 181-270 107-214 (324)
254 1qvr_A CLPB protein; coiled co 95.5 0.01 3.4E-07 72.3 5.9 45 161-205 559-612 (854)
255 4g1u_C Hemin import ATP-bindin 95.5 0.037 1.3E-06 56.8 9.1 127 181-307 37-221 (266)
256 1vpl_A ABC transporter, ATP-bi 95.4 0.068 2.3E-06 54.4 10.7 125 181-307 41-219 (256)
257 1r6b_X CLPA protein; AAA+, N-t 95.4 0.022 7.7E-07 68.4 8.1 45 161-205 459-512 (758)
258 3tui_C Methionine import ATP-b 95.4 0.07 2.4E-06 57.0 11.0 126 180-307 53-237 (366)
259 1u94_A RECA protein, recombina 95.3 0.059 2E-06 57.8 10.1 85 180-271 62-153 (356)
260 2nq2_C Hypothetical ABC transp 95.3 0.055 1.9E-06 55.0 9.4 124 182-307 32-202 (253)
261 1xp8_A RECA protein, recombina 95.2 0.069 2.4E-06 57.4 10.2 84 181-271 74-164 (366)
262 2b8t_A Thymidine kinase; deoxy 95.1 0.01 3.5E-07 59.0 3.2 110 181-296 12-127 (223)
263 1rz3_A Hypothetical protein rb 95.1 0.022 7.5E-07 55.9 5.5 43 164-206 2-47 (201)
264 2px0_A Flagellar biosynthesis 95.0 0.071 2.4E-06 55.6 9.7 85 180-267 104-190 (296)
265 2i1q_A DNA repair and recombin 94.9 0.059 2E-06 57.2 8.9 89 181-270 98-215 (322)
266 3lda_A DNA repair protein RAD5 94.9 0.12 4.1E-06 56.2 11.3 89 181-270 178-284 (400)
267 3c8u_A Fructokinase; YP_612366 94.7 0.024 8.3E-07 55.9 4.9 40 167-206 6-47 (208)
268 1pzn_A RAD51, DNA repair and r 94.7 0.076 2.6E-06 56.9 9.0 91 180-271 130-243 (349)
269 4akg_A Glutathione S-transfera 94.6 0.65 2.2E-05 62.4 18.9 80 182-270 1268-1347(2695)
270 3e70_C DPA, signal recognition 94.5 1.1 3.7E-05 47.3 17.3 27 180-206 128-154 (328)
271 1z47_A CYSA, putative ABC-tran 94.5 0.093 3.2E-06 55.9 9.0 125 181-307 41-219 (355)
272 3ice_A Transcription terminati 94.5 0.034 1.2E-06 59.1 5.4 95 171-270 163-272 (422)
273 3d31_A Sulfate/molybdate ABC t 94.4 0.1 3.6E-06 55.5 9.0 124 181-307 26-201 (348)
274 3rlf_A Maltose/maltodextrin im 94.4 0.13 4.6E-06 55.2 9.8 125 181-307 29-207 (381)
275 3rfe_A Platelet glycoprotein I 94.4 0.056 1.9E-06 48.6 5.9 53 556-611 12-67 (130)
276 3dm5_A SRP54, signal recogniti 94.4 0.24 8.1E-06 54.3 11.9 27 180-206 99-125 (443)
277 3fvq_A Fe(3+) IONS import ATP- 94.4 0.17 5.7E-06 54.0 10.5 125 181-307 30-212 (359)
278 3lw7_A Adenylate kinase relate 94.3 0.024 8.4E-07 53.9 3.7 23 182-205 2-24 (179)
279 3kb2_A SPBC2 prophage-derived 94.3 0.027 9.1E-07 53.5 3.9 25 182-206 2-26 (173)
280 1g5t_A COB(I)alamin adenosyltr 94.3 0.032 1.1E-06 53.6 4.3 127 181-309 28-179 (196)
281 3cf2_A TER ATPase, transitiona 94.2 0.1 3.5E-06 61.7 9.4 93 159-270 476-581 (806)
282 1jr3_D DNA polymerase III, del 94.2 0.36 1.2E-05 51.5 13.1 161 172-354 9-184 (343)
283 3jvv_A Twitching mobility prot 94.2 0.011 3.9E-07 63.4 1.1 114 179-298 121-234 (356)
284 1qhx_A CPT, protein (chloramph 94.2 0.027 9.3E-07 53.8 3.7 25 182-206 4-28 (178)
285 3rfe_A Platelet glycoprotein I 94.2 0.052 1.8E-06 48.8 5.2 51 532-585 12-65 (130)
286 2hf9_A Probable hydrogenase ni 94.1 0.047 1.6E-06 54.5 5.5 40 167-206 24-63 (226)
287 3vaa_A Shikimate kinase, SK; s 94.1 0.03 1E-06 54.8 3.9 26 181-206 25-50 (199)
288 2ffh_A Protein (FFH); SRP54, s 94.0 0.4 1.4E-05 52.4 12.8 26 181-206 98-123 (425)
289 1ukz_A Uridylate kinase; trans 94.0 0.12 4.1E-06 50.5 8.0 27 180-206 14-40 (203)
290 1kgd_A CASK, peripheral plasma 93.9 0.032 1.1E-06 53.6 3.6 24 182-205 6-29 (180)
291 2ga8_A Hypothetical 39.9 kDa p 93.9 0.064 2.2E-06 56.7 6.1 44 163-206 2-49 (359)
292 1sky_E F1-ATPase, F1-ATP synth 93.9 0.13 4.3E-06 56.7 8.7 87 183-270 153-256 (473)
293 1g8p_A Magnesium-chelatase 38 93.9 0.029 9.9E-07 60.4 3.7 50 157-206 21-70 (350)
294 1kag_A SKI, shikimate kinase I 93.9 0.031 1.1E-06 53.1 3.5 25 182-206 5-29 (173)
295 2xxa_A Signal recognition part 93.9 0.41 1.4E-05 52.6 12.8 27 180-206 99-125 (433)
296 2wsm_A Hydrogenase expression/ 93.8 0.046 1.6E-06 54.3 4.7 43 164-206 13-55 (221)
297 3trf_A Shikimate kinase, SK; a 93.8 0.036 1.2E-06 53.4 3.8 26 181-206 5-30 (185)
298 3kl4_A SRP54, signal recogniti 93.8 0.23 7.9E-06 54.4 10.5 87 181-270 97-190 (433)
299 3bh0_A DNAB-like replicative h 93.8 0.33 1.1E-05 51.1 11.6 51 181-235 68-118 (315)
300 2orw_A Thymidine kinase; TMTK, 93.7 0.0075 2.6E-07 58.3 -1.4 107 182-296 4-114 (184)
301 4eun_A Thermoresistant glucoki 93.7 0.043 1.5E-06 53.7 4.1 27 179-205 27-53 (200)
302 1vma_A Cell division protein F 93.7 0.22 7.6E-06 52.0 9.8 88 180-270 103-197 (306)
303 2r44_A Uncharacterized protein 93.6 0.044 1.5E-06 58.5 4.4 145 161-325 28-200 (331)
304 3uie_A Adenylyl-sulfate kinase 93.6 0.047 1.6E-06 53.4 4.2 29 178-206 22-50 (200)
305 1zp6_A Hypothetical protein AT 93.6 0.031 1.1E-06 54.1 3.0 24 181-204 9-32 (191)
306 1odf_A YGR205W, hypothetical 3 93.6 0.069 2.4E-06 55.5 5.6 28 179-206 29-56 (290)
307 1fx0_B ATP synthase beta chain 93.6 0.2 6.8E-06 55.2 9.3 88 182-270 166-277 (498)
308 3t61_A Gluconokinase; PSI-biol 93.6 0.037 1.3E-06 54.2 3.4 26 181-206 18-43 (202)
309 1ly1_A Polynucleotide kinase; 93.5 0.04 1.4E-06 52.7 3.5 22 182-203 3-24 (181)
310 1ye8_A Protein THEP1, hypothet 93.5 0.043 1.5E-06 52.5 3.6 24 183-206 2-25 (178)
311 3hws_A ATP-dependent CLP prote 93.4 0.07 2.4E-06 57.7 5.7 45 162-206 17-76 (363)
312 3tr0_A Guanylate kinase, GMP k 93.4 0.044 1.5E-06 53.7 3.6 24 182-205 8-31 (205)
313 2dr3_A UPF0273 protein PH0284; 93.4 0.3 1E-05 49.1 10.1 47 181-231 23-69 (247)
314 2jaq_A Deoxyguanosine kinase; 93.3 0.052 1.8E-06 53.1 4.0 24 183-206 2-25 (205)
315 1via_A Shikimate kinase; struc 93.3 0.047 1.6E-06 52.0 3.5 25 182-206 5-29 (175)
316 3a00_A Guanylate kinase, GMP k 93.2 0.044 1.5E-06 52.9 3.2 25 182-206 2-26 (186)
317 3iij_A Coilin-interacting nucl 93.2 0.051 1.7E-06 52.1 3.6 26 181-206 11-36 (180)
318 1kht_A Adenylate kinase; phosp 93.2 0.054 1.8E-06 52.4 3.9 25 182-206 4-28 (192)
319 1knq_A Gluconate kinase; ALFA/ 93.1 0.052 1.8E-06 51.7 3.6 25 181-205 8-32 (175)
320 2bbw_A Adenylate kinase 4, AK4 93.1 0.059 2E-06 54.7 4.2 27 180-206 26-52 (246)
321 2ze6_A Isopentenyl transferase 93.1 0.051 1.8E-06 55.4 3.7 25 182-206 2-26 (253)
322 1nks_A Adenylate kinase; therm 93.1 0.048 1.7E-06 52.8 3.4 25 182-206 2-26 (194)
323 4gp7_A Metallophosphoesterase; 93.1 0.041 1.4E-06 52.3 2.7 22 181-202 9-30 (171)
324 2ck3_D ATP synthase subunit be 93.0 0.32 1.1E-05 53.4 9.9 98 172-270 143-264 (482)
325 3umf_A Adenylate kinase; rossm 93.0 0.068 2.3E-06 52.7 4.3 27 180-206 28-54 (217)
326 3tau_A Guanylate kinase, GMP k 93.0 0.063 2.1E-06 52.9 4.0 27 180-206 7-33 (208)
327 2bdt_A BH3686; alpha-beta prot 93.0 0.053 1.8E-06 52.4 3.4 22 182-203 3-24 (189)
328 1ex7_A Guanylate kinase; subst 93.0 0.044 1.5E-06 52.6 2.7 25 182-206 2-26 (186)
329 1um8_A ATP-dependent CLP prote 93.0 0.094 3.2E-06 57.0 5.8 26 181-206 72-97 (376)
330 2rhm_A Putative kinase; P-loop 92.9 0.058 2E-06 52.2 3.7 26 181-206 5-30 (193)
331 2qor_A Guanylate kinase; phosp 92.9 0.058 2E-06 52.9 3.6 26 180-205 11-36 (204)
332 2iyv_A Shikimate kinase, SK; t 92.9 0.053 1.8E-06 52.1 3.3 25 182-206 3-27 (184)
333 1lvg_A Guanylate kinase, GMP k 92.9 0.052 1.8E-06 53.0 3.2 24 182-205 5-28 (198)
334 3nbx_X ATPase RAVA; AAA+ ATPas 92.9 0.074 2.5E-06 59.7 4.8 43 162-206 24-66 (500)
335 1cke_A CK, MSSA, protein (cyti 92.9 0.062 2.1E-06 53.7 3.9 25 182-206 6-30 (227)
336 1j8m_F SRP54, signal recogniti 92.9 0.63 2.1E-05 48.4 11.6 87 181-269 98-190 (297)
337 1zuh_A Shikimate kinase; alpha 92.8 0.068 2.3E-06 50.5 3.9 27 180-206 6-32 (168)
338 1y63_A LMAJ004144AAA protein; 92.8 0.072 2.5E-06 51.2 4.1 25 180-204 9-33 (184)
339 2j41_A Guanylate kinase; GMP, 92.8 0.06 2.1E-06 52.8 3.6 25 181-205 6-30 (207)
340 2yvu_A Probable adenylyl-sulfa 92.7 0.068 2.3E-06 51.5 3.8 27 180-206 12-38 (186)
341 2c95_A Adenylate kinase 1; tra 92.6 0.074 2.5E-06 51.6 4.0 27 180-206 8-34 (196)
342 2if2_A Dephospho-COA kinase; a 92.6 0.059 2E-06 52.8 3.3 22 182-203 2-23 (204)
343 2j37_W Signal recognition part 92.6 0.85 2.9E-05 51.0 12.9 27 180-206 100-126 (504)
344 1tev_A UMP-CMP kinase; ploop, 92.6 0.072 2.5E-06 51.6 3.8 25 182-206 4-28 (196)
345 1g41_A Heat shock protein HSLU 92.6 0.092 3.2E-06 57.6 4.9 46 161-206 16-75 (444)
346 3asz_A Uridine kinase; cytidin 92.5 0.063 2.1E-06 52.9 3.3 27 180-206 5-31 (211)
347 1e6c_A Shikimate kinase; phosp 92.5 0.069 2.4E-06 50.6 3.5 25 182-206 3-27 (173)
348 3ney_A 55 kDa erythrocyte memb 92.5 0.077 2.6E-06 51.4 3.8 27 180-206 18-44 (197)
349 3cm0_A Adenylate kinase; ATP-b 92.5 0.078 2.7E-06 51.0 3.9 25 182-206 5-29 (186)
350 1znw_A Guanylate kinase, GMP k 92.5 0.071 2.4E-06 52.4 3.6 25 181-205 20-44 (207)
351 1xjc_A MOBB protein homolog; s 92.4 0.081 2.8E-06 49.8 3.7 27 180-206 3-29 (169)
352 3cmu_A Protein RECA, recombina 92.4 0.28 9.7E-06 63.4 9.7 83 180-269 1426-1515(2050)
353 2pt5_A Shikimate kinase, SK; a 92.4 0.088 3E-06 49.6 4.0 24 183-206 2-25 (168)
354 1htw_A HI0065; nucleotide-bind 92.3 0.078 2.7E-06 49.5 3.5 26 180-205 32-57 (158)
355 1gvn_B Zeta; postsegregational 92.3 0.12 4.2E-06 53.6 5.4 26 180-205 32-57 (287)
356 3fwy_A Light-independent proto 92.3 0.071 2.4E-06 56.1 3.5 40 179-220 46-85 (314)
357 3vr4_D V-type sodium ATPase su 92.3 0.17 5.8E-06 55.2 6.5 86 183-270 153-259 (465)
358 1uf9_A TT1252 protein; P-loop, 92.3 0.075 2.6E-06 51.9 3.5 25 180-204 7-31 (203)
359 2bwj_A Adenylate kinase 5; pho 92.3 0.076 2.6E-06 51.7 3.6 26 181-206 12-37 (199)
360 3tlx_A Adenylate kinase 2; str 92.2 0.17 5.7E-06 51.2 6.1 27 180-206 28-54 (243)
361 1jjv_A Dephospho-COA kinase; P 92.2 0.069 2.4E-06 52.4 3.2 22 182-203 3-24 (206)
362 2plr_A DTMP kinase, probable t 92.2 0.084 2.9E-06 52.0 3.8 26 182-207 5-30 (213)
363 2cdn_A Adenylate kinase; phosp 92.2 0.098 3.4E-06 51.1 4.3 27 180-206 19-45 (201)
364 1z6g_A Guanylate kinase; struc 92.1 0.071 2.4E-06 52.9 3.1 25 181-205 23-47 (218)
365 4e22_A Cytidylate kinase; P-lo 92.1 0.088 3E-06 53.6 3.9 27 180-206 26-52 (252)
366 2pbr_A DTMP kinase, thymidylat 92.1 0.089 3E-06 50.9 3.8 23 183-205 2-24 (195)
367 3tqc_A Pantothenate kinase; bi 92.1 0.14 4.9E-06 53.7 5.5 27 180-206 91-117 (321)
368 2vli_A Antibiotic resistance p 92.0 0.065 2.2E-06 51.3 2.6 26 181-206 5-30 (183)
369 3a4m_A L-seryl-tRNA(SEC) kinas 92.0 0.094 3.2E-06 53.7 3.9 25 181-205 4-28 (260)
370 3aez_A Pantothenate kinase; tr 92.0 0.092 3.2E-06 55.2 3.9 27 180-206 89-115 (312)
371 3j16_B RLI1P; ribosome recycli 92.0 0.46 1.6E-05 54.7 10.1 81 228-308 201-295 (608)
372 2qt1_A Nicotinamide riboside k 91.9 0.079 2.7E-06 52.1 3.2 25 181-205 21-45 (207)
373 3j16_B RLI1P; ribosome recycli 91.8 0.24 8.3E-06 57.0 7.5 127 182-308 379-542 (608)
374 2jeo_A Uridine-cytidine kinase 91.8 0.089 3E-06 53.3 3.5 26 180-205 24-49 (245)
375 1ls1_A Signal recognition part 91.8 0.66 2.2E-05 48.2 10.2 86 180-268 97-189 (295)
376 3ozx_A RNAse L inhibitor; ATP 91.8 0.15 5.2E-06 57.9 5.8 127 182-308 295-460 (538)
377 1qf9_A UMP/CMP kinase, protein 91.8 0.09 3.1E-06 50.8 3.4 26 181-206 6-31 (194)
378 2grj_A Dephospho-COA kinase; T 91.7 0.1 3.5E-06 50.5 3.6 26 180-205 11-36 (192)
379 1aky_A Adenylate kinase; ATP:A 91.7 0.12 4E-06 51.4 4.2 26 181-206 4-29 (220)
380 3fb4_A Adenylate kinase; psych 91.7 0.11 3.6E-06 51.5 3.8 24 183-206 2-25 (216)
381 1s96_A Guanylate kinase, GMP k 91.6 0.1 3.5E-06 51.7 3.6 26 181-206 16-41 (219)
382 3hjn_A DTMP kinase, thymidylat 91.6 0.42 1.4E-05 46.3 8.0 24 183-206 2-25 (197)
383 2i3b_A HCR-ntpase, human cance 91.6 0.096 3.3E-06 50.5 3.3 25 182-206 2-26 (189)
384 2z0h_A DTMP kinase, thymidylat 91.6 0.24 8.1E-06 48.0 6.2 24 183-206 2-25 (197)
385 1rj9_A FTSY, signal recognitio 91.6 0.11 3.8E-06 54.3 4.0 27 180-206 101-127 (304)
386 4a1f_A DNAB helicase, replicat 91.6 0.57 2E-05 49.5 9.4 52 181-236 46-97 (338)
387 1tue_A Replication protein E1; 91.5 0.18 6.1E-06 48.7 5.0 38 169-206 45-83 (212)
388 2p5t_B PEZT; postsegregational 91.5 0.14 4.7E-06 52.2 4.6 27 180-206 31-57 (253)
389 3k1j_A LON protease, ATP-depen 91.5 0.13 4.3E-06 59.9 4.8 48 157-206 38-85 (604)
390 3sr0_A Adenylate kinase; phosp 91.5 0.12 4.2E-06 50.5 4.0 24 183-206 2-25 (206)
391 1zak_A Adenylate kinase; ATP:A 91.5 0.11 3.6E-06 51.8 3.5 26 181-206 5-30 (222)
392 1zd8_A GTP:AMP phosphotransfer 91.4 0.1 3.6E-06 52.0 3.4 26 181-206 7-32 (227)
393 2wwf_A Thymidilate kinase, put 91.4 0.11 3.9E-06 51.0 3.7 26 181-206 10-35 (212)
394 3dl0_A Adenylate kinase; phosp 91.4 0.11 3.9E-06 51.2 3.7 24 183-206 2-25 (216)
395 2onk_A Molybdate/tungstate ABC 91.3 0.12 4E-06 52.1 3.7 26 179-205 23-48 (240)
396 1nn5_A Similar to deoxythymidy 91.3 0.12 4.2E-06 50.9 3.8 26 181-206 9-34 (215)
397 1uj2_A Uridine-cytidine kinase 91.2 0.13 4.5E-06 52.3 4.0 27 180-206 21-47 (252)
398 3gmt_A Adenylate kinase; ssgci 91.1 0.72 2.5E-05 45.6 9.1 26 181-206 8-33 (230)
399 1gtv_A TMK, thymidylate kinase 91.1 0.066 2.3E-06 52.9 1.6 25 182-206 1-25 (214)
400 3l0o_A Transcription terminati 91.1 0.31 1.1E-05 51.8 6.7 99 171-270 164-273 (427)
401 2pt7_A CAG-ALFA; ATPase, prote 91.0 0.28 9.5E-06 52.0 6.5 105 182-296 172-276 (330)
402 2v54_A DTMP kinase, thymidylat 91.0 0.13 4.4E-06 50.3 3.6 25 181-205 4-28 (204)
403 3nwj_A ATSK2; P loop, shikimat 91.0 0.12 4.1E-06 52.3 3.5 26 181-206 48-73 (250)
404 2iw3_A Elongation factor 3A; a 91.0 0.77 2.6E-05 55.4 10.8 122 182-308 462-619 (986)
405 2f1r_A Molybdopterin-guanine d 90.9 0.077 2.6E-06 50.2 1.8 25 182-206 3-27 (171)
406 2ehv_A Hypothetical protein PH 90.9 0.12 4.2E-06 52.3 3.5 23 181-203 30-52 (251)
407 3tif_A Uncharacterized ABC tra 90.8 0.12 4.1E-06 51.9 3.2 25 181-205 31-55 (235)
408 2pez_A Bifunctional 3'-phospho 90.8 0.14 4.7E-06 48.9 3.5 26 181-206 5-30 (179)
409 1m7g_A Adenylylsulfate kinase; 90.7 0.23 8E-06 48.8 5.2 28 179-206 23-50 (211)
410 3gqb_B V-type ATP synthase bet 90.7 0.2 6.9E-06 54.6 5.0 88 183-270 149-262 (464)
411 3r20_A Cytidylate kinase; stru 90.7 0.15 5.2E-06 50.8 3.8 26 181-206 9-34 (233)
412 1np6_A Molybdopterin-guanine d 90.7 0.18 6E-06 47.9 4.1 27 180-206 5-31 (174)
413 3lnc_A Guanylate kinase, GMP k 90.7 0.091 3.1E-06 52.6 2.2 24 182-205 28-52 (231)
414 3b5x_A Lipid A export ATP-bind 90.5 0.73 2.5E-05 53.1 9.9 26 180-205 368-393 (582)
415 3d3q_A TRNA delta(2)-isopenten 90.5 0.15 5E-06 53.8 3.6 25 182-206 8-32 (340)
416 3ake_A Cytidylate kinase; CMP 90.5 0.16 5.6E-06 49.6 3.9 25 182-206 3-27 (208)
417 2pcj_A ABC transporter, lipopr 90.5 0.11 3.7E-06 51.8 2.5 25 181-205 30-54 (224)
418 1sq5_A Pantothenate kinase; P- 90.5 0.25 8.7E-06 51.8 5.5 27 180-206 79-105 (308)
419 1vht_A Dephospho-COA kinase; s 90.4 0.17 5.8E-06 50.1 3.9 23 181-203 4-26 (218)
420 3b9q_A Chloroplast SRP recepto 90.4 0.16 5.4E-06 53.1 3.8 26 181-206 100-125 (302)
421 3b85_A Phosphate starvation-in 90.4 0.11 3.7E-06 51.1 2.4 23 182-204 23-45 (208)
422 2xb4_A Adenylate kinase; ATP-b 90.3 0.17 6E-06 50.2 3.9 24 183-206 2-25 (223)
423 1ak2_A Adenylate kinase isoenz 90.2 0.21 7.1E-06 50.1 4.3 26 181-206 16-41 (233)
424 3gfo_A Cobalt import ATP-bindi 90.2 0.15 5E-06 52.5 3.2 62 246-307 148-217 (275)
425 1b0u_A Histidine permease; ABC 90.2 0.13 4.5E-06 52.5 2.9 26 180-205 31-56 (262)
426 2cbz_A Multidrug resistance-as 90.2 0.13 4.6E-06 51.6 2.9 25 181-205 31-55 (237)
427 3p32_A Probable GTPase RV1496/ 90.1 0.31 1.1E-05 52.3 6.0 38 169-206 65-104 (355)
428 3be4_A Adenylate kinase; malar 90.1 0.16 5.6E-06 50.2 3.5 25 182-206 6-30 (217)
429 2d2e_A SUFC protein; ABC-ATPas 90.1 0.16 5.3E-06 51.6 3.3 23 182-204 30-52 (250)
430 1e4v_A Adenylate kinase; trans 90.0 0.17 5.6E-06 50.0 3.4 24 183-206 2-25 (214)
431 1sgw_A Putative ABC transporte 90.0 0.13 4.3E-06 50.8 2.4 24 182-205 36-59 (214)
432 2zu0_C Probable ATP-dependent 90.0 0.16 5.6E-06 52.0 3.4 25 180-204 45-69 (267)
433 3crm_A TRNA delta(2)-isopenten 89.9 0.17 6E-06 52.9 3.6 25 182-206 6-30 (323)
434 1ji0_A ABC transporter; ATP bi 89.9 0.14 4.8E-06 51.5 2.8 25 181-205 32-56 (240)
435 2olj_A Amino acid ABC transpor 89.9 0.14 5E-06 52.2 2.9 26 180-205 49-74 (263)
436 1g6h_A High-affinity branched- 89.8 0.14 4.9E-06 52.1 2.8 24 182-205 34-57 (257)
437 2f6r_A COA synthase, bifunctio 89.7 0.17 5.9E-06 52.3 3.3 23 180-202 74-96 (281)
438 2c61_A A-type ATP synthase non 89.7 0.29 9.9E-06 53.7 5.2 89 182-270 153-260 (469)
439 1oix_A RAS-related protein RAB 89.7 0.17 5.9E-06 48.8 3.2 24 182-205 30-53 (191)
440 3exa_A TRNA delta(2)-isopenten 89.7 0.2 6.7E-06 52.0 3.6 25 181-205 3-27 (322)
441 2yhs_A FTSY, cell division pro 89.6 0.34 1.2E-05 53.6 5.8 41 181-224 293-333 (503)
442 2ff7_A Alpha-hemolysin translo 89.6 0.15 5.3E-06 51.5 2.8 24 182-205 36-59 (247)
443 1mv5_A LMRA, multidrug resista 89.5 0.16 5.5E-06 51.2 2.9 24 181-204 28-51 (243)
444 1zu4_A FTSY; GTPase, signal re 89.4 0.39 1.3E-05 50.5 5.9 27 180-206 104-130 (320)
445 3a8t_A Adenylate isopentenyltr 89.4 0.18 6.1E-06 53.0 3.2 25 181-205 40-64 (339)
446 3thx_A DNA mismatch repair pro 89.4 0.33 1.1E-05 58.7 5.9 111 181-300 662-790 (934)
447 2og2_A Putative signal recogni 89.4 0.21 7.3E-06 53.3 3.8 26 181-206 157-182 (359)
448 2qi9_C Vitamin B12 import ATP- 89.3 0.17 5.9E-06 51.2 2.9 24 182-205 27-50 (249)
449 2ixe_A Antigen peptide transpo 89.2 0.17 5.8E-06 52.0 2.8 26 180-205 44-69 (271)
450 1yrb_A ATP(GTP)binding protein 89.2 0.26 9E-06 50.2 4.3 27 180-206 13-39 (262)
451 2f9l_A RAB11B, member RAS onco 89.2 0.22 7.4E-06 48.4 3.5 24 182-205 6-29 (199)
452 2ghi_A Transport protein; mult 89.2 0.17 5.8E-06 51.6 2.8 25 181-205 46-70 (260)
453 2qe7_A ATP synthase subunit al 89.2 0.54 1.8E-05 51.8 6.9 85 182-270 163-265 (502)
454 2v9p_A Replication protein E1; 89.2 0.21 7.3E-06 51.9 3.6 27 179-205 124-150 (305)
455 3foz_A TRNA delta(2)-isopenten 89.1 0.26 8.8E-06 51.0 4.0 27 180-206 9-35 (316)
456 2ihy_A ABC transporter, ATP-bi 89.1 0.18 6E-06 52.0 2.9 25 181-205 47-71 (279)
457 2yz2_A Putative ABC transporte 89.0 0.18 6.1E-06 51.7 2.8 24 181-204 33-56 (266)
458 3cmw_A Protein RECA, recombina 89.0 0.86 2.9E-05 58.3 9.4 80 182-268 384-470 (1706)
459 2dyk_A GTP-binding protein; GT 88.9 0.25 8.7E-06 45.7 3.6 24 182-205 2-25 (161)
460 4eaq_A DTMP kinase, thymidylat 88.8 0.39 1.3E-05 47.8 5.2 28 180-207 25-52 (229)
461 2eyu_A Twitching motility prot 88.8 0.23 8E-06 50.6 3.5 112 179-297 23-135 (261)
462 2wji_A Ferrous iron transport 88.8 0.24 8.1E-06 46.4 3.3 23 182-204 4-26 (165)
463 3cmu_A Protein RECA, recombina 88.8 0.96 3.3E-05 58.6 9.7 85 180-271 382-473 (2050)
464 3end_A Light-independent proto 88.5 0.45 1.5E-05 49.9 5.7 43 177-221 37-79 (307)
465 3mfy_A V-type ATP synthase alp 88.5 0.95 3.3E-05 50.3 8.2 96 172-271 217-336 (588)
466 1cr0_A DNA primase/helicase; R 88.5 0.58 2E-05 48.7 6.4 51 180-233 34-84 (296)
467 2r9v_A ATP synthase subunit al 88.5 0.49 1.7E-05 52.2 5.9 85 182-270 176-278 (515)
468 3llm_A ATP-dependent RNA helic 88.4 1 3.5E-05 44.9 8.0 31 170-202 67-97 (235)
469 1q3t_A Cytidylate kinase; nucl 88.4 0.32 1.1E-05 48.8 4.2 27 180-206 15-41 (236)
470 3sop_A Neuronal-specific septi 88.3 0.23 7.9E-06 50.9 3.1 24 183-206 4-27 (270)
471 2zej_A Dardarin, leucine-rich 88.2 0.24 8.2E-06 47.3 3.0 22 183-204 4-25 (184)
472 2q6t_A DNAB replication FORK h 88.2 1.9 6.4E-05 47.7 10.7 52 181-235 200-251 (444)
473 1ltq_A Polynucleotide kinase; 88.2 0.26 8.9E-06 51.5 3.5 23 182-204 3-25 (301)
474 3oaa_A ATP synthase subunit al 88.1 1.2 4.2E-05 48.9 8.7 86 182-270 163-265 (513)
475 1a7j_A Phosphoribulokinase; tr 88.1 0.17 5.9E-06 52.5 2.0 26 180-205 4-29 (290)
476 2pjz_A Hypothetical protein ST 88.0 0.23 7.9E-06 50.6 2.9 24 181-204 30-53 (263)
477 1svm_A Large T antigen; AAA+ f 88.0 0.55 1.9E-05 50.5 5.9 27 179-205 167-193 (377)
478 3zvl_A Bifunctional polynucleo 87.9 0.26 8.9E-06 54.2 3.4 27 179-205 256-282 (416)
479 2r6a_A DNAB helicase, replicat 87.8 1.3 4.5E-05 49.1 9.1 50 181-233 203-252 (454)
480 3bgw_A DNAB-like replicative h 87.6 1.5 5.1E-05 48.4 9.3 49 181-233 197-245 (444)
481 1nlf_A Regulatory protein REPA 87.6 0.27 9.1E-06 50.8 3.0 25 181-205 30-54 (279)
482 2wjg_A FEOB, ferrous iron tran 87.5 0.29 1E-05 46.8 3.2 23 182-204 8-30 (188)
483 3vr4_A V-type sodium ATPase ca 87.4 1.1 3.6E-05 50.2 7.7 95 172-270 222-340 (600)
484 4gzl_A RAS-related C3 botulinu 87.4 0.27 9.3E-06 47.9 2.9 41 165-205 14-54 (204)
485 2ce2_X GTPase HRAS; signaling 87.4 0.26 8.7E-06 45.8 2.6 23 183-205 5-27 (166)
486 3nh6_A ATP-binding cassette SU 87.3 0.23 7.7E-06 51.9 2.3 26 180-205 79-104 (306)
487 1z2a_A RAS-related protein RAB 87.3 0.32 1.1E-05 45.3 3.3 24 182-205 6-29 (168)
488 4edh_A DTMP kinase, thymidylat 87.3 0.9 3.1E-05 44.6 6.6 25 182-206 7-31 (213)
489 3iqw_A Tail-anchored protein t 87.3 0.86 2.9E-05 48.2 6.8 47 176-224 11-57 (334)
490 2ged_A SR-beta, signal recogni 87.2 0.41 1.4E-05 46.0 4.0 26 180-205 47-72 (193)
491 4hlc_A DTMP kinase, thymidylat 87.2 0.81 2.8E-05 44.6 6.1 30 182-213 3-32 (205)
492 3v9p_A DTMP kinase, thymidylat 87.2 0.8 2.7E-05 45.4 6.1 26 181-206 25-50 (227)
493 2v3c_C SRP54, signal recogniti 87.1 0.44 1.5E-05 52.4 4.6 26 181-206 99-124 (432)
494 2lkc_A Translation initiation 87.1 0.38 1.3E-05 45.4 3.6 25 180-204 7-31 (178)
495 3vkg_A Dynein heavy chain, cyt 87.0 4.6 0.00016 55.0 14.8 90 170-270 1294-1385(3245)
496 1tq4_A IIGP1, interferon-induc 87.0 0.43 1.5E-05 51.9 4.4 24 180-203 68-91 (413)
497 1u0j_A DNA replication protein 87.0 0.65 2.2E-05 47.0 5.4 37 169-205 90-128 (267)
498 1q57_A DNA primase/helicase; d 87.0 2.2 7.6E-05 48.1 10.6 51 181-234 242-292 (503)
499 2vp4_A Deoxynucleoside kinase; 87.0 0.22 7.4E-06 49.8 1.9 24 181-204 20-43 (230)
500 1g8f_A Sulfate adenylyltransfe 86.9 0.48 1.7E-05 53.0 4.8 43 164-206 376-420 (511)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.8e-48 Score=451.63 Aligned_cols=306 Identities=15% Similarity=0.161 Sum_probs=249.2
Q ss_pred cchHHHHHHHHHHHhcC---CCcEEEEECCCCCcHHHHHHHHHH--HhcccCCCceEEEEEeCCCC--CHHHHHHHHHHH
Q 045843 163 PSLNKHLKMLQECLRNV---GTKRICIWGPPGVGKTTIMENLHD--AIGESRQFDFIFWVTVNSEG--NIRDIQEVLLKR 235 (913)
Q Consensus 163 ~gr~~~~~~l~~~L~~~---~~~vi~I~G~gG~GKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~ 235 (913)
+||+.++++|.++|... ..++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ ++..+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999543 679999999999999999999999 67888999999999999985 899999999999
Q ss_pred ccCCcc--------CCChHHHHHHHHHHHccC-CeEEEEeCCCCccccccccCCCCCCCceEEEEeechhhhhcC--C-c
Q 045843 236 LDLRAE--------DHNIDQRADMISEELKDK-SYVLFLDEVSTEINLRDIGIHDEHKNGKVVFACIFRNICGQI--D-E 303 (913)
Q Consensus 236 l~~~~~--------~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~~~~~~~~s~iivTTR~~~v~~~~--~-~ 303 (913)
++.... ..+.+.++..+++.|+++ ||||||||||+...+ . ++ ..+||+||||||++.|+... . .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~--~~-~~~gs~ilvTTR~~~v~~~~~~~~~ 286 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-R--WA-QELRLRCLVTTRDVEISNAASQTCE 286 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-H--HH-HHTTCEEEEEESBGGGGGGCCSCEE
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-c--cc-ccCCCEEEEEcCCHHHHHHcCCCCe
Confidence 986521 134566789999999996 999999999997754 1 11 12799999999999998872 2 5
Q ss_pred eEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCCCC
Q 045843 304 EVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDMLSQLRSPSMAPKQ 383 (913)
Q Consensus 304 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~ 383 (913)
+|++++|+.+|||+||.+.++... ..+.+++++++|+++|+|+||||+++|+.|+.+ + |+.+ +.+.. ..+..
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~-~l~~~- 358 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMP-VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNN-KLESR- 358 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHH-HHHHH-
T ss_pred EEECCCCCHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHH-Hhhcc-
Confidence 799999999999999999998753 246788999999999999999999999999776 3 4433 22221 11000
Q ss_pred chHHHHHHHHHhccCCchhHHHHhh-----------hhccccCCccccHHHHHHHHHhc--CchhhhcchHHHHHHHHHH
Q 045843 384 ELEEVYKSFKLVCDKLPSDKQLCLL-----------YWAIFPVGYELHEDYIIECWRAE--QFFACLRKLGEARDRGQSI 450 (913)
Q Consensus 384 ~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~a~fp~~~~i~~~~Li~~W~a~--g~i~~~~~~~~~~~~~~~~ 450 (913)
...++.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.....+...++.++ |
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~ 433 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-R 433 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-H
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-H
Confidence 1245778899999999999999999 999999999999 8999999 99987643555677777 9
Q ss_pred HHHHHHhcccccCC--CccccchhHHHHHHHHHHhcc
Q 045843 451 LDEFVKKSLLEKGR--KASHYKMFEHFQRAALRIANH 485 (913)
Q Consensus 451 ~~~L~~~~ll~~~~--~~~~~~mHdlv~~~a~~i~~~ 485 (913)
|++|+++||++... ...+|+|||+||++|++++.+
T Consensus 434 l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 434 LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 99999999999765 346799999999999998876
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.4e-40 Score=384.86 Aligned_cols=281 Identities=16% Similarity=0.215 Sum_probs=233.2
Q ss_pred ccchHHHHHHHHHHHhc-CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCce-EEEEEeCCCCCHHHHHHHHHHHccCC
Q 045843 162 VPSLNKHLKMLQECLRN-VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDF-IFWVTVNSEGNIRDIQEVLLKRLDLR 239 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~~~ 239 (913)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 38999999999999965 56789999999999999999999998888899986 99999999999988888887754321
Q ss_pred ---c--c-C------CChHHHHHHHHHHH---ccCCeEEEEeCCCCccccccccCCCCCCCceEEEEeechhhhhc--CC
Q 045843 240 ---A--E-D------HNIDQRADMISEEL---KDKSYVLFLDEVSTEINLRDIGIHDEHKNGKVVFACIFRNICGQ--ID 302 (913)
Q Consensus 240 ---~--~-~------~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~~~~~~~~s~iivTTR~~~v~~~--~~ 302 (913)
. . + .+.+.+...+++.+ .+||+||||||||+...|+.+. .||+||||||++.++.. ..
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-----pGSRILVTTRd~~Va~~l~g~ 284 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-----LSCKILLTTRFKQVTDFLSAA 284 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-----SSCCEEEECSCSHHHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-----CCeEEEEeccChHHHHhcCCC
Confidence 0 0 0 13455667777766 6799999999999988887752 69999999999998864 33
Q ss_pred ceEEcc------cCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcC-CChHHHHHHHHhhc
Q 045843 303 EEVNVQ------RLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLANV-SNPAIWRDMLSQLR 375 (913)
Q Consensus 303 ~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~-~~~~~w~~~~~~l~ 375 (913)
..|.++ +|+.+|||+||.+..... ..++..+| |+|+||||+++|+.|+.+ .+.++|+.. .
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----~ 351 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----N 351 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHHCCC------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----S
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHcCCC------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----C
Confidence 356666 999999999999985322 22344444 999999999999999988 477888763 1
Q ss_pred CCCCCCCCchHHHHHHHHHhccCCchhH-HHHhhhhccccCCccccHHHHHHHHHhcCchhhhcchHHHHHHHHHHHHHH
Q 045843 376 SPSMAPKQELEEVYKSFKLVCDKLPSDK-QLCLLYWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEARDRGQSILDEF 454 (913)
Q Consensus 376 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~~L 454 (913)
...+..+|.+||+.||++. |+||+|||+||+++.|+++.++.+|+++| ++.++.++++|
T Consensus 352 ---------~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eL 411 (1221)
T 1vt4_I 352 ---------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKL 411 (1221)
T ss_dssp ---------CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHH
T ss_pred ---------hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHH
Confidence 1679999999999999998 99999999999999999999999999987 12478899999
Q ss_pred HHhcccccCCCccccchhHHHHHHHH
Q 045843 455 VKKSLLEKGRKASHYKMFEHFQRAAL 480 (913)
Q Consensus 455 ~~~~ll~~~~~~~~~~mHdlv~~~a~ 480 (913)
+++||++.......|+|||++++++.
T Consensus 412 vdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 412 HKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 99999998656678999999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.3e-38 Score=408.37 Aligned_cols=306 Identities=20% Similarity=0.282 Sum_probs=252.7
Q ss_pred ccccccchHHHHHHHHHHHh--cCCCcEEEEECCCCCcHHHHHHHHHHHhcc-cCCC-ceEEEEEeCCCCC--HHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLR--NVGTKRICIWGPPGVGKTTIMENLHDAIGE-SRQF-DFIFWVTVNSEGN--IRDIQEV 231 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~i~~~ 231 (913)
....|+||+.++++|.++|. +.+.++|+|+||||+||||||+++|++.++ ..+| +.++||++++..+ ....+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 33468999999999999994 457889999999999999999999988653 3555 6788999998643 4455677
Q ss_pred HHHHccCCcc-----CCChHHHHHHHHHHHccC--CeEEEEeCCCCccccccccCCCCCCCceEEEEeechhhhhc---C
Q 045843 232 LLKRLDLRAE-----DHNIDQRADMISEELKDK--SYVLFLDEVSTEINLRDIGIHDEHKNGKVVFACIFRNICGQ---I 301 (913)
Q Consensus 232 i~~~l~~~~~-----~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~~~~~~~~s~iivTTR~~~v~~~---~ 301 (913)
++..+..... ..+.+.+...++..+.++ |+||||||||+...|..+ .+||+||||||++.++.. .
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-----~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-----DNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-----CSSCEEEEEESSTTTTTTCCSC
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-----cCCCEEEEEcCCHHHHHhhcCC
Confidence 7777765431 256788888999999877 999999999998777765 468999999999999854 5
Q ss_pred CceEEccc-CChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCC
Q 045843 302 DEEVNVQR-LSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDMLSQLRSPSMA 380 (913)
Q Consensus 302 ~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~ 380 (913)
...+.+++ |+++|||+||...++.. .+.+++++++|+++|+|+||||+++|++|+.+. ..|+.+++.+.. ...
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~-~~~ 350 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQN-KQF 350 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHS-CCC
T ss_pred ceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhh-hhh
Confidence 57889986 99999999999998653 344566899999999999999999999999873 479988888755 322
Q ss_pred C------CCchHHHHHHHHHhccCCchhHHHHhhhhccccCCccccHHHHHHHHHhcCchhhhcchHHHHHHHHHHHHHH
Q 045843 381 P------KQELEEVYKSFKLVCDKLPSDKQLCLLYWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEARDRGQSILDEF 454 (913)
Q Consensus 381 ~------~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~~L 454 (913)
. ....+.+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.+++++++|
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L 418 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEF 418 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHH
Confidence 1 11236799999999999999999999999999999999999999999765 35678899999
Q ss_pred HHhcccccCCC--ccccchhHHHHHHHHHHhccc
Q 045843 455 VKKSLLEKGRK--ASHYKMFEHFQRAALRIANHD 486 (913)
Q Consensus 455 ~~~~ll~~~~~--~~~~~mHdlv~~~a~~i~~~~ 486 (913)
++++|++...+ ..+|+|||+||++|+..+.++
T Consensus 419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999987543 336999999999999987653
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=341.66 Aligned_cols=300 Identities=21% Similarity=0.287 Sum_probs=239.9
Q ss_pred ccccchHHHHHHHHHHHh--cCCCcEEEEECCCCCcHHHHHHHHHHHhcc-cCCC-ceEEEEEeCCCCCHHHHHHHH---
Q 045843 160 EEVPSLNKHLKMLQECLR--NVGTKRICIWGPPGVGKTTIMENLHDAIGE-SRQF-DFIFWVTVNSEGNIRDIQEVL--- 232 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~i~~~i--- 232 (913)
..||||+.++++|.++|. ..+.++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...++..+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence 457899999999999996 346789999999999999999999988755 5889 58999999876 444444443
Q ss_pred HHHccCC-----ccCCChHHHHHHHHHHHcc--CCeEEEEeCCCCccccccccCCCCCCCceEEEEeechhhhhc-CCce
Q 045843 233 LKRLDLR-----AEDHNIDQRADMISEELKD--KSYVLFLDEVSTEINLRDIGIHDEHKNGKVVFACIFRNICGQ-IDEE 304 (913)
Q Consensus 233 ~~~l~~~-----~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~~~~~~~~s~iivTTR~~~v~~~-~~~~ 304 (913)
+..++.. ....+.+.....++..+.+ +++||||||||+...++.+ ..|++||||||+..++.. ....
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-----~~~~~ilvTsR~~~~~~~~~~~~ 277 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-----DSQCQILLTTRDKSVTDSVMGPK 277 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-----CSSCEEEEEESCGGGGTTCCSCE
T ss_pred HHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-----cCCCeEEEECCCcHHHHhcCCCc
Confidence 4455421 1225667788888888876 7999999999987655543 468999999999998876 4455
Q ss_pred EEc---ccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhcCCChHHHHHHHHhhcCCCCCC
Q 045843 305 VNV---QRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLANVSNPAIWRDMLSQLRSPSMAP 381 (913)
Q Consensus 305 ~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~ 381 (913)
+.+ ++|+.+|+++||.+.++.. .....+.+.+|+++|+|+|||+..+|+.++.+ ..+|+.+++.+.. ....
T Consensus 278 ~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~-~~~~ 351 (591)
T 1z6t_A 278 YVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQN-KQFK 351 (591)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHS-CCCC
T ss_pred eEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHH-hHHH
Confidence 666 4899999999999998753 12234578999999999999999999999986 3479988888765 3211
Q ss_pred ------CCchHHHHHHHHHhccCCchhHHHHhhhhccccCCccccHHHHHHHHHhcCchhhhcchHHHHHHHHHHHHHHH
Q 045843 382 ------KQELEEVYKSFKLVCDKLPSDKQLCLLYWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEARDRGQSILDEFV 455 (913)
Q Consensus 382 ------~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~~L~ 455 (913)
......+..++..||+.||++.|.||++||+||+++.|+.+.++..|.++ .+.++.++++|+
T Consensus 352 ~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~ 419 (591)
T 1z6t_A 352 RIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFV 419 (591)
T ss_dssp CSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHH
T ss_pred HhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHH
Confidence 11226899999999999999999999999999999999999999999654 234678999999
Q ss_pred HhcccccCC--CccccchhHHHHHHHHHHh
Q 045843 456 KKSLLEKGR--KASHYKMFEHFQRAALRIA 483 (913)
Q Consensus 456 ~~~ll~~~~--~~~~~~mHdlv~~~a~~i~ 483 (913)
+++|++... ....|+||+++|+++....
T Consensus 420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred hCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 999998654 3347999999999999874
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.9e-22 Score=222.21 Aligned_cols=306 Identities=15% Similarity=0.174 Sum_probs=224.7
Q ss_pred CHHhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCccee
Q 045843 501 SEEEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKAL 580 (913)
Q Consensus 501 ~~~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L 580 (913)
....+++++++++.++.+..++....+++|++|++++|.++.+++ |..+++|++|++++|.++.+| .+.++++|++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 445678999999999999999888889999999999999998887 799999999999999999886 59999999999
Q ss_pred ecCCccCccccChhhhccccCCEEecCCCcC-CcCCCcc-ccccccccccccceeecccccccccCCCCCccceeeeecc
Q 045843 581 FLNNCCQLMRLPAEVGDLHNLEILDLSHTGI-CCLPSEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGY 658 (913)
Q Consensus 581 ~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~-~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~ 658 (913)
++++ +.+..+|. +.++++|++|++++|.. ..++. + .++ +|++|++..+......
T Consensus 116 ~l~~-n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~-------~L~~L~l~~~~~~~~~-------------- 171 (347)
T 4fmz_A 116 YLNE-DNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMT-------GLNYLTVTESKVKDVT-------------- 171 (347)
T ss_dssp ECTT-SCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCT-------TCCEEECCSSCCCCCG--------------
T ss_pred ECcC-CcccCchh-hccCCceeEEECCCCCCcccccc-hhhCC-------CCcEEEecCCCcCCch--------------
Confidence 9999 57888876 89999999999999966 44433 4 777 8999988876221110
Q ss_pred ccCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEee
Q 045843 659 NQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISII 738 (913)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~ 738 (913)
.+..+ ..|+.|.+. .+....++.. ..+++|+.|.++++... ...
T Consensus 172 ------------------------~~~~l--~~L~~L~l~-------~n~l~~~~~~--~~l~~L~~L~l~~n~l~-~~~ 215 (347)
T 4fmz_A 172 ------------------------PIANL--TDLYSLSLN-------YNQIEDISPL--ASLTSLHYFTAYVNQIT-DIT 215 (347)
T ss_dssp ------------------------GGGGC--TTCSEEECT-------TSCCCCCGGG--GGCTTCCEEECCSSCCC-CCG
T ss_pred ------------------------hhccC--CCCCEEEcc-------CCcccccccc--cCCCccceeecccCCCC-CCc
Confidence 01122 233444443 3333344443 67788999999885433 322
Q ss_pred cCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhh
Q 045843 739 DGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEI 818 (913)
Q Consensus 739 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i 818 (913)
. +. .+++|+.|+++++.-.... + ...+++|+.|++++| .+..+ +.+..+++|+.|++++|. ++.+
T Consensus 216 ~--~~---~~~~L~~L~l~~n~l~~~~---~--~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~l~~n~-l~~~ 280 (347)
T 4fmz_A 216 P--VA---NMTRLNSLKIGNNKITDLS---P--LANLSQLTWLEIGTN-QISDI---NAVKDLTKLKMLNVGSNQ-ISDI 280 (347)
T ss_dssp G--GG---GCTTCCEEECCSSCCCCCG---G--GTTCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCCC
T ss_pred h--hh---cCCcCCEEEccCCccCCCc---c--hhcCCCCCEEECCCC-ccCCC---hhHhcCCCcCEEEccCCc-cCCC
Confidence 2 33 6889999999765322111 1 247889999999985 56666 678889999999999885 4444
Q ss_pred hcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeecccccc
Q 045843 819 IEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWS 893 (913)
Q Consensus 819 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~ 893 (913)
+ ....+++|+.|++++|+ +.......+..+|+|+.|++++|+ ++.+|. +..+++|+++++..+.+.
T Consensus 281 ~------~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 281 S------VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp G------GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC---
T ss_pred h------hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhccc
Confidence 3 46678999999999985 443333256678999999999985 666665 678899999998876653
No 6
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=5.7e-22 Score=227.37 Aligned_cols=344 Identities=14% Similarity=0.181 Sum_probs=231.3
Q ss_pred HHhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceee
Q 045843 502 EEEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALF 581 (913)
Q Consensus 502 ~~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~ 581 (913)
.....+++.|++.++.+..+|....+++|++|++++|.+..+++ |..+++|++|++++|.+..++. ++++++|++|+
T Consensus 42 ~~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 42 QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hhHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 34567899999999999999888889999999999999999887 7999999999999999998887 99999999999
Q ss_pred cCCccCccccChhhhccccCCEEecCCCcCCcCCCccccccccccccccceeecccccccccCCCCCccceeeeeccccC
Q 045843 582 LNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQR 661 (913)
Q Consensus 582 L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~ 661 (913)
+++ +.+..+|. ++++++|++|++++|.+..+|....++ +|+.|++... ......+..++.|+.+.-..+.
T Consensus 119 L~~-n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~-------~L~~L~l~~~-~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 119 LFN-NQITDIDP-LKNLTNLNRLELSSNTISDISALSGLT-------SLQQLSFGNQ-VTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp CCS-SCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCT-------TCSEEEEEES-CCCCGGGTTCTTCCEEECCSSC
T ss_pred CCC-CCCCCChH-HcCCCCCCEEECCCCccCCChhhccCC-------cccEeecCCc-ccCchhhccCCCCCEEECcCCc
Confidence 999 57888875 999999999999999987776422666 6666665432 1111122333333333221111
Q ss_pred CCCCccccccCCccccceeecC--CCCCch----hhHHHhcccccccccccccccccCccccCcccCcceEEecccCCce
Q 045843 662 SSPHMEFDFSGCSAEKYLRFAD--GEGFPD----AVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMI 735 (913)
Q Consensus 662 ~~~~~~~~~~~~~~~~~l~l~~--l~~l~~----~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 735 (913)
...+. .+..+..+..+.+.. +..+++ ..|+.|.+. .+.+..++.+ ..+++|+.|++++|...
T Consensus 189 -l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-------~n~l~~~~~l--~~l~~L~~L~l~~n~l~- 256 (466)
T 1o6v_A 189 -VSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLN-------GNQLKDIGTL--ASLTNLTDLDLANNQIS- 256 (466)
T ss_dssp -CCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECC-------SSCCCCCGGG--GGCTTCSEEECCSSCCC-
T ss_pred -CCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECC-------CCCcccchhh--hcCCCCCEEECCCCccc-
Confidence 00000 011111222222211 112211 223333332 2233334433 67788888888886433
Q ss_pred EeecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchh
Q 045843 736 SIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEM 815 (913)
Q Consensus 736 ~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l 815 (913)
...+ +. .+++|+.|+++++.-.. . .+...+++|+.|++++| .+..+ +.++.+++|+.|++++|..
T Consensus 257 ~~~~--~~---~l~~L~~L~l~~n~l~~-~----~~~~~l~~L~~L~L~~n-~l~~~---~~~~~l~~L~~L~L~~n~l- 321 (466)
T 1o6v_A 257 NLAP--LS---GLTKLTELKLGANQISN-I----SPLAGLTALTNLELNEN-QLEDI---SPISNLKNLTYLTLYFNNI- 321 (466)
T ss_dssp CCGG--GT---TCTTCSEEECCSSCCCC-C----GGGTTCTTCSEEECCSS-CCSCC---GGGGGCTTCSEEECCSSCC-
T ss_pred cchh--hh---cCCCCCEEECCCCccCc-c----ccccCCCccCeEEcCCC-cccCc---hhhcCCCCCCEEECcCCcC-
Confidence 3322 33 67888888886643211 1 11246889999999984 56666 4478899999999998863
Q ss_pred HhhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeecccccccC
Q 045843 816 EEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSSL 895 (913)
Q Consensus 816 ~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~l 895 (913)
..++ ....+++|+.|++++| .+..++ ....+++|+.|++++|+ +..++. +..+++|+.+++..+-|..+
T Consensus 322 ~~~~------~~~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 322 SDIS------PVSSLTKLQRLFFYNN-KVSDVS--SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SCCG------GGGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEEEECC
T ss_pred CCch------hhccCccCCEeECCCC-ccCCch--hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCcccCC
Confidence 3332 3567899999999988 466654 36778999999999985 455544 67889999999998888775
Q ss_pred C
Q 045843 896 V 896 (913)
Q Consensus 896 ~ 896 (913)
.
T Consensus 391 p 391 (466)
T 1o6v_A 391 P 391 (466)
T ss_dssp C
T ss_pred c
Confidence 4
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.9e-22 Score=225.79 Aligned_cols=302 Identities=15% Similarity=0.162 Sum_probs=188.2
Q ss_pred hhhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeec
Q 045843 506 EVANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFL 582 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L 582 (913)
.+++.+++.++.+..+|.. ..+++|++|++++|.+..+++..|..+++|++|+|++|.++.+| ..++++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 4555566665555555543 34556666666666555555545555666666666666655443 33556666666666
Q ss_pred CCccCccccChh-hhccccCCEEecCCCcCCcCCCc-c-ccccccccccccceeecccccccccCCCCCccceeeeeccc
Q 045843 583 NNCCQLMRLPAE-VGDLHNLEILDLSHTGICCLPSE-I-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYN 659 (913)
Q Consensus 583 ~~c~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~-i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~ 659 (913)
++ +.+..+|.. ++++++|++|++++|.+..++.. + .++ +|++|++..+...
T Consensus 125 ~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~l~------------------ 178 (390)
T 3o6n_A 125 ER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-------SLQNLQLSSNRLT------------------ 178 (390)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT-------TCCEEECCSSCCS------------------
T ss_pred CC-CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC-------CCCEEECCCCcCC------------------
Confidence 65 345555544 35566666666666655444333 2 455 5555555544110
Q ss_pred cCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeec
Q 045843 660 QRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIID 739 (913)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~ 739 (913)
.. .+..+ ..++.|.+. .+... .. ...++|+.|+++++... .+..
T Consensus 179 ------------------~~---~~~~l--~~L~~L~l~-------~n~l~---~~--~~~~~L~~L~l~~n~l~-~~~~ 222 (390)
T 3o6n_A 179 ------------------HV---DLSLI--PSLFHANVS-------YNLLS---TL--AIPIAVEELDASHNSIN-VVRG 222 (390)
T ss_dssp ------------------BC---CGGGC--TTCSEEECC-------SSCCS---EE--ECCSSCSEEECCSSCCC-EEEC
T ss_pred ------------------cc---ccccc--cccceeecc-------ccccc---cc--CCCCcceEEECCCCeee-eccc
Confidence 00 11111 223333333 22222 21 33467899999885443 4433
Q ss_pred CCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhh
Q 045843 740 GNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEII 819 (913)
Q Consensus 740 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~ 819 (913)
. .+++|+.|+++++.-....+ ...+++|+.|+|++| .+... ++..+.++++|+.|++++|. ++.++
T Consensus 223 ~------~~~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~ 288 (390)
T 3o6n_A 223 P------VNVELTILKLQHNNLTDTAW-----LLNYPGLVEVDLSYN-ELEKI-MYHPFVKMQRLERLYISNNR-LVALN 288 (390)
T ss_dssp C------CCSSCCEEECCSSCCCCCGG-----GGGCTTCSEEECCSS-CCCEE-ESGGGTTCSSCCEEECCSSC-CCEEE
T ss_pred c------ccccccEEECCCCCCcccHH-----HcCCCCccEEECCCC-cCCCc-ChhHccccccCCEEECCCCc-CcccC
Confidence 2 46899999997654322222 247899999999995 56665 33678899999999999886 45454
Q ss_pred cCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeecccccc
Q 045843 820 EAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWS 893 (913)
Q Consensus 820 ~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~ 893 (913)
. ....+|+|+.|+++++ .+..++. ....+++|+.|++++| .++.+| +..+++|+.+++..+.|+
T Consensus 289 ~-----~~~~l~~L~~L~L~~n-~l~~~~~-~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 289 L-----YGQPIPTLKVLDLSHN-HLLHVER-NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp C-----SSSCCTTCCEEECCSS-CCCCCGG-GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred c-----ccCCCCCCCEEECCCC-cceecCc-cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCcc
Confidence 3 5567899999999998 5777766 5667899999999997 577887 567899999999987664
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=7.3e-22 Score=227.51 Aligned_cols=315 Identities=18% Similarity=0.192 Sum_probs=224.3
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceeecCCccC
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNCCQ 587 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c~~ 587 (913)
+.+...++.+..+|... .++++.|++++|.++.+++..|.++++|++|+|++|.++.+ |..++++.+|++|+|++ +.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-Cc
Confidence 45666667777777643 36899999999999988887789999999999999999866 77899999999999999 56
Q ss_pred ccccChh-hhccccCCEEecCCCcCCcCC-Ccc-ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCC
Q 045843 588 LMRLPAE-VGDLHNLEILDLSHTGICCLP-SEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSP 664 (913)
Q Consensus 588 l~~lP~~-i~~L~~L~~L~L~~~~~~~lp-~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 664 (913)
+..+|.. ++++++|++|++++|.+..++ ..+ .++ +|++|++..+.....
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-------~L~~L~l~~n~l~~~--------------------- 143 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-------NLKSLEVGDNDLVYI--------------------- 143 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-------TCCEEEECCTTCCEE---------------------
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccc-------cCCEEECCCCcccee---------------------
Confidence 7888764 788999999999999985554 444 777 888888877621100
Q ss_pred CccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcc
Q 045843 665 HMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTE 744 (913)
Q Consensus 665 ~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 744 (913)
....+..+ ..|+.|.+. .+.+..++...+..+++|+.|+++++... .+.+..+.
T Consensus 144 ---------------~~~~~~~l--~~L~~L~l~-------~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~- 197 (477)
T 2id5_A 144 ---------------SHRAFSGL--NSLEQLTLE-------KCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFK- 197 (477)
T ss_dssp ---------------CTTSSTTC--TTCCEEEEE-------SCCCSSCCHHHHTTCTTCCEEEEESCCCC-EECTTCSC-
T ss_pred ---------------ChhhccCC--CCCCEEECC-------CCcCcccChhHhcccCCCcEEeCCCCcCc-EeChhhcc-
Confidence 11122233 344444444 33444444433577888999999886543 55554455
Q ss_pred cccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcc
Q 045843 745 GVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSA 824 (913)
Q Consensus 745 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~ 824 (913)
.+++|+.|+++++..+...... .....+|+.|+|++| .++.+ +...+.++++|+.|++++|. ++.++.
T Consensus 198 --~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~---- 265 (477)
T 2id5_A 198 --RLYRLKVLEISHWPYLDTMTPN---CLYGLNLTSLSITHC-NLTAV-PYLAVRHLVYLRFLNLSYNP-ISTIEG---- 265 (477)
T ss_dssp --SCTTCCEEEEECCTTCCEECTT---TTTTCCCSEEEEESS-CCCSC-CHHHHTTCTTCCEEECCSSC-CCEECT----
T ss_pred --cCcccceeeCCCCccccccCcc---cccCccccEEECcCC-ccccc-CHHHhcCccccCeeECCCCc-CCccCh----
Confidence 6888999999876554422111 113458999999984 56666 44678889999999998887 333432
Q ss_pred cCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccCC-CcCCCCcceeeecccccc
Q 045843 825 VDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPST-IENASKLRGIQCNQAWWS 893 (913)
Q Consensus 825 ~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~-~~~l~~L~~l~~~~~~~~ 893 (913)
.....+++|+.|+++++ .+..+....+..+++|+.|++++| .++.+|.. +..+++|+.++...+-|.
T Consensus 266 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 266 SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 24567889999999987 455554436677899999999996 78888765 457889999988876654
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=1.5e-21 Score=232.16 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=104.6
Q ss_pred hhhhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceee
Q 045843 505 WEVANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALF 581 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~ 581 (913)
+..+++|++.+|.+..+++. ..+++|++|++++|.+..+++..|.++++|++|+|++|.+..+ |..++++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 45789999999999887543 7899999999999999888887789999999999999999865 67899999999999
Q ss_pred cCCccCcccc-ChhhhccccCCEEecCCCcCCcC--CCccccccccccccccceeecccc
Q 045843 582 LNNCCQLMRL-PAEVGDLHNLEILDLSHTGICCL--PSEIDLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 582 L~~c~~l~~l-P~~i~~L~~L~~L~L~~~~~~~l--p~~i~L~~L~~~~~~L~~L~l~~~ 638 (913)
+++ +.+..+ |..++++++|++|++++|.+..+ |....++ +|++|++..+
T Consensus 112 L~~-n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~L~~n 163 (606)
T 3t6q_A 112 FIQ-TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE-------KLKVLDFQNN 163 (606)
T ss_dssp CTT-SCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT-------TCCEEECCSS
T ss_pred ccc-cCcccCCcchhccCCcccEEECCCCcccccCcccccCCc-------ccCEEEcccC
Confidence 999 566766 67789999999999999999655 4444556 6666666555
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.8e-21 Score=231.52 Aligned_cols=108 Identities=25% Similarity=0.292 Sum_probs=63.7
Q ss_pred hhhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeec
Q 045843 506 EVANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFL 582 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L 582 (913)
.++++|++.+|.+..+++. ..+++|++|++++|.++.+++..|.++++|++|++++|.++.+| ..++++.+|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 4555666666655554332 45566666666666665554444566666666666666665554 45666666666666
Q ss_pred CCccCcc--ccChhhhccccCCEEecCCCcCCcC
Q 045843 583 NNCCQLM--RLPAEVGDLHNLEILDLSHTGICCL 614 (913)
Q Consensus 583 ~~c~~l~--~lP~~i~~L~~L~~L~L~~~~~~~l 614 (913)
++| .+. .+|..++++++|++|++++|.+..+
T Consensus 136 ~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 136 AHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCC-cccceechHhHhhcCCCCEEEccCCcceec
Confidence 663 333 3566666666666666666666444
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=8.6e-22 Score=234.27 Aligned_cols=127 Identities=24% Similarity=0.239 Sum_probs=111.0
Q ss_pred hhhhceeeeccccccCCCC--CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceee
Q 045843 505 WEVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALF 581 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~ 581 (913)
+.+++.|++++|.+..++. ...+++|++|++++|.++.+++..|.++++|++|+|++|.++.+ |..|+++.+|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 3689999999999988876 37899999999999999999888889999999999999999977 78899999999999
Q ss_pred cCCccCccccC-hhhhccccCCEEecCCCcCC--cCCCcc-ccccccccccccceeeccccc
Q 045843 582 LNNCCQLMRLP-AEVGDLHNLEILDLSHTGIC--CLPSEI-DLTTLCFYFPNVGLLQNFINA 639 (913)
Q Consensus 582 L~~c~~l~~lP-~~i~~L~~L~~L~L~~~~~~--~lp~~i-~L~~L~~~~~~L~~L~l~~~~ 639 (913)
+++ +.+..+| ..++++++|++|++++|.+. .+|..+ +++ +|++|++..+.
T Consensus 111 L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-------~L~~L~Ls~n~ 164 (606)
T 3vq2_A 111 AVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-------NLVHVDLSYNY 164 (606)
T ss_dssp CTT-SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT-------TCCEEECCSSC
T ss_pred ccC-CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC-------CCCEEEccCCc
Confidence 999 5666665 67999999999999999995 578877 777 77777776663
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=226.69 Aligned_cols=107 Identities=15% Similarity=0.238 Sum_probs=68.4
Q ss_pred ccccccEEeeccCccccc-cCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCC-CccceeecccccccccccccC
Q 045843 774 SLIMLETLILKRCHGMKT-LFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAF-PKLKSFQLINLPKLSSICHNM 851 (913)
Q Consensus 774 ~l~~L~~L~L~~c~~l~~-l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f-~~L~~L~l~~~~~l~~i~~~~ 851 (913)
.+++|+.|+|++| .+.. + |...+..+++|+.|++++|.....++. .+ ++|+.|++++| .++.++. .
T Consensus 372 ~l~~L~~L~Ls~N-~l~~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~l~~~L~~L~Ls~N-~l~~ip~-~ 439 (520)
T 2z7x_B 372 QMKSLQQLDISQN-SVSYDE-KKGDCSWTKSLLSLNMSSNILTDTIFR--------CLPPRIKVLDLHSN-KIKSIPK-Q 439 (520)
T ss_dssp TCTTCCEEECCSS-CCBCCG-GGCSCCCCTTCCEEECCSSCCCGGGGG--------SCCTTCCEEECCSS-CCCCCCG-G
T ss_pred hCCCCCEEECCCC-cCCccc-ccchhccCccCCEEECcCCCCCcchhh--------hhcccCCEEECCCC-cccccch-h
Confidence 4555555555552 2333 2 222344455555555555543333321 22 68888888887 5667776 4
Q ss_pred ccCCCCccEEeeecCcccccccCC-CcCCCCcceeeecccccc
Q 045843 852 SLAWPLLETITIKACDELRNFPST-IENASKLRGIQCNQAWWS 893 (913)
Q Consensus 852 ~~~~p~L~~L~i~~C~~L~~lP~~-~~~l~~L~~l~~~~~~~~ 893 (913)
...+++|+.|++++| .++.+|.. +..+++|++++...+.|.
T Consensus 440 ~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 440 VVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCc
Confidence 558899999999997 78889886 778899999998887765
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=3.1e-21 Score=226.92 Aligned_cols=121 Identities=23% Similarity=0.290 Sum_probs=86.9
Q ss_pred hceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceeecCCcc
Q 045843 508 ANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNCC 586 (913)
Q Consensus 508 ~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c~ 586 (913)
.+++++.++.+..+|... .++|++|++++|.+..+++..|.++++|++|+|++|.++.+ |..++++++|++|+|++ +
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-N 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT-S
T ss_pred CcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC-C
Confidence 367777777777777643 26778888888877777776677788888888888877766 56677788888888887 5
Q ss_pred CccccChhhhccccCCEEecCCCcCCcCC--Ccc-ccccccccccccceeeccccc
Q 045843 587 QLMRLPAEVGDLHNLEILDLSHTGICCLP--SEI-DLTTLCFYFPNVGLLQNFINA 639 (913)
Q Consensus 587 ~l~~lP~~i~~L~~L~~L~L~~~~~~~lp--~~i-~L~~L~~~~~~L~~L~l~~~~ 639 (913)
.+..+|.. .+++|++|++++|.+..+| ..+ .++ +|++|++..+.
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-------~L~~L~L~~n~ 157 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT-------KLTFLGLSAAK 157 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT-------TCCEEEEECSB
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccC-------cccEEecCCCc
Confidence 67777766 7778888888888775554 444 666 66666666553
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.1e-21 Score=231.90 Aligned_cols=301 Identities=15% Similarity=0.167 Sum_probs=182.1
Q ss_pred hhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecC
Q 045843 507 VANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLN 583 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~ 583 (913)
+++.+++.++.+..+|.. ..+++|++|++++|.+..+++..|..+++|++|+|++|.++.+|. .++++++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 445555555555555543 345555555555555555555445555555555555555554433 34555555555555
Q ss_pred CccCccccChh-hhccccCCEEecCCCcCCcCCCc-c-ccccccccccccceeecccccccccCCCCCccceeeeecccc
Q 045843 584 NCCQLMRLPAE-VGDLHNLEILDLSHTGICCLPSE-I-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQ 660 (913)
Q Consensus 584 ~c~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~-i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~ 660 (913)
+ +.+..+|.. ++++++|++|++++|.+..+|.. + .++ +|++|++..+...
T Consensus 132 ~-n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~L~~N~l~------------------- 184 (597)
T 3oja_B 132 R-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-------SLQNLQLSSNRLT------------------- 184 (597)
T ss_dssp S-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-------TCCEEECTTSCCS-------------------
T ss_pred C-CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC-------cCcEEECcCCCCC-------------------
Confidence 5 344455444 35555555555555555433332 2 444 5555555444110
Q ss_pred CCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecC
Q 045843 661 RSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDG 740 (913)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 740 (913)
.+ .+..+ ..|+.|.+. .+.+ ... ...++|+.|+++++... .+...
T Consensus 185 -----------------~~---~~~~l--~~L~~L~l~-------~n~l---~~l--~~~~~L~~L~ls~n~l~-~~~~~ 229 (597)
T 3oja_B 185 -----------------HV---DLSLI--PSLFHANVS-------YNLL---STL--AIPIAVEELDASHNSIN-VVRGP 229 (597)
T ss_dssp -----------------BC---CGGGC--TTCSEEECC-------SSCC---SEE--ECCTTCSEEECCSSCCC-EEECS
T ss_pred -----------------Cc---Chhhh--hhhhhhhcc-------cCcc---ccc--cCCchhheeeccCCccc-ccccc
Confidence 00 01111 123333332 2222 221 34467899999886443 44432
Q ss_pred CCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhc
Q 045843 741 NLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIE 820 (913)
Q Consensus 741 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~ 820 (913)
.+++|+.|+++++.-....+ ...+++|+.|+|++ +.+..+ ++..++++++|+.|++++|. +..++.
T Consensus 230 ------~~~~L~~L~L~~n~l~~~~~-----l~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~~ 295 (597)
T 3oja_B 230 ------VNVELTILKLQHNNLTDTAW-----LLNYPGLVEVDLSY-NELEKI-MYHPFVKMQRLERLYISNNR-LVALNL 295 (597)
T ss_dssp ------CCSCCCEEECCSSCCCCCGG-----GGGCTTCSEEECCS-SCCCEE-ESGGGTTCSSCCEEECTTSC-CCEEEC
T ss_pred ------cCCCCCEEECCCCCCCCChh-----hccCCCCCEEECCC-CccCCC-CHHHhcCccCCCEEECCCCC-CCCCCc
Confidence 45789999997754322222 24789999999999 456666 33678899999999999876 444553
Q ss_pred CCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeecccccc
Q 045843 821 AGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWS 893 (913)
Q Consensus 821 ~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~ 893 (913)
....+|+|+.|+|++| .+..++. ....+++|+.|++++| .+..+| +..+++|+.+++..+.|+
T Consensus 296 -----~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 296 -----YGQPIPTLKVLDLSHN-HLLHVER-NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp -----SSSCCTTCCEEECCSS-CCCCCGG-GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred -----ccccCCCCcEEECCCC-CCCccCc-ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 5567999999999998 4667776 5677899999999997 577776 457889999999887764
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.5e-21 Score=236.14 Aligned_cols=344 Identities=13% Similarity=0.075 Sum_probs=213.3
Q ss_pred hhhhhceeeeccccccC------------------CCCC-C--CCCceeEEeeccCccccCchHHHhcCCcccEEeccCC
Q 045843 504 EWEVANRISLIRMCLST------------------LPKR-P--KCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDT 562 (913)
Q Consensus 504 ~~~~~~~Lsl~~~~~~~------------------l~~~-~--~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~ 562 (913)
...+++.|++.+|.+.. +|.. . .+++|++|++++|.+....+..|.++++|++|+|++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 34567777777777766 6655 2 5777777777777544433344577777777777777
Q ss_pred c-cc--ccCccccCcc-------CcceeecCCccCccccCh--hhhccccCCEEecCCCcCCcCCCcc-ccccccccccc
Q 045843 563 K-IK--LLPSSISSLT-------NLKALFLNNCCQLMRLPA--EVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPN 629 (913)
Q Consensus 563 ~-i~--~lp~~i~~L~-------~L~~L~L~~c~~l~~lP~--~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~ 629 (913)
+ ++ .+|..++++. +|++|+|++ +.+..+|. .++++++|++|++++|.+..+| .+ .++ +
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~-------~ 596 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNV-------K 596 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTS-------E
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeC-CcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCC-------c
Confidence 6 66 3676666655 777777777 45557777 7777777777777777777777 44 666 7
Q ss_pred cceeecccccccccC-CCCCccc-eeeeeccccCCCCCccccccCCccccceeec-CCCCCchhhHHHhccccccccccc
Q 045843 630 VGLLQNFINASKSWN-GNSNFRS-FSILVGYNQRSSPHMEFDFSGCSAEKYLRFA-DGEGFPDAVVKILEQACAFELIGH 706 (913)
Q Consensus 630 L~~L~l~~~~~~~~~-~~~~l~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~-~l~~l~~~~L~~L~i~~~l~l~~~ 706 (913)
|+.|++..+...... .+..+.. |+.+.-..+. .. .++ .+..++...|+.|.+. .+
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~--------------L~--~lp~~~~~~~~~~L~~L~Ls------~N 654 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK--------------LK--YIPNIFNAKSVYVMGSVDFS------YN 654 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC--------------CC--SCCSCCCTTCSSCEEEEECC------SS
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCC--------------CC--cCchhhhccccCCCCEEECc------CC
Confidence 777777766433221 1222222 2222111110 00 000 1111110123444433 22
Q ss_pred ccccccCcc--ccC--cccCcceEEecccCCceEeecCCCcccccccCCceEecccccccchhcccccc-----cccccc
Q 045843 707 RTAANLSDF--GAN--KFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQ-----SGSLIM 777 (913)
Q Consensus 707 ~~~~~l~~~--~~~--~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~~l~~ 777 (913)
.....++.+ .+. .+++|+.|++++|... .++...+. .+++|+.|+++++. +......... ...+++
T Consensus 655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~---~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFA---TGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHH---TTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGG
T ss_pred cCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHc---cCCCCCEEECCCCc-CCccChHHhccccccccccCC
Confidence 211222222 112 3458999999886443 33332222 47899999997642 2211111000 123459
Q ss_pred ccEEeeccCccccccCchHHHh--hcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeeccccc------ccccccc
Q 045843 778 LETLILKRCHGMKTLFSEEIIF--QLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLP------KLSSICH 849 (913)
Q Consensus 778 L~~L~L~~c~~l~~l~~~~~l~--~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~------~l~~i~~ 849 (913)
|+.|+|++| .+..+ | ..+. .+++|+.|+|++|.. ..++. ....+++|+.|+|++++ ....+|.
T Consensus 730 L~~L~Ls~N-~L~~l-p-~~l~~~~l~~L~~L~Ls~N~L-~~lp~-----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 730 LTTIDLRFN-KLTSL-S-DDFRATTLPYLSNMDVSYNCF-SSFPT-----QPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp CCEEECCSS-CCCCC-C-GGGSTTTCTTCCEEECCSSCC-SSCCC-----GGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred ccEEECCCC-CCccc-h-HHhhhccCCCcCEEEeCCCCC-Cccch-----hhhcCCCCCEEECCCCCCcccccccccChH
Confidence 999999995 66666 3 4555 899999999999874 34654 66789999999998743 3445555
Q ss_pred cCccCCCCccEEeeecCcccccccCCCcCCCCcceeeecccccccCC
Q 045843 850 NMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSSLV 896 (913)
Q Consensus 850 ~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~l~ 896 (913)
.+..+++|+.|++++| .++.+|..+. ++|+.|+++.+.|..+.
T Consensus 801 -~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 801 -GITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp -TGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred -HHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCCCCCccC
Confidence 6778999999999998 5599998764 69999999999887776
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.2e-21 Score=224.46 Aligned_cols=341 Identities=17% Similarity=0.221 Sum_probs=220.7
Q ss_pred hhhceeeeccccccCCCC--CCCCCceeEEeeccCccc-cCchHHHhcCCcccEEeccCCccccc-CccccCccCcceee
Q 045843 506 EVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLA-ELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALF 581 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~-~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~ 581 (913)
+++++|++.+|.+..++. ...+++|++|++++|.+. .+++..|.++++|++|+|++|.++.+ |..++++.+|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 678999999998887643 378899999999999765 56677788999999999999999865 77899999999999
Q ss_pred cCCccCccccChh--hhccccCCEEecCCCcCCcC-CCc-c-ccccccccccccceeecccccccccC--CCCCc--cce
Q 045843 582 LNNCCQLMRLPAE--VGDLHNLEILDLSHTGICCL-PSE-I-DLTTLCFYFPNVGLLQNFINASKSWN--GNSNF--RSF 652 (913)
Q Consensus 582 L~~c~~l~~lP~~--i~~L~~L~~L~L~~~~~~~l-p~~-i-~L~~L~~~~~~L~~L~l~~~~~~~~~--~~~~l--~~l 652 (913)
|++|......|.. ++++++|++|++++|.+..+ |.. + .++ +|++|++..+...... ....+ ..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR-------RFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT-------TCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC-------cccEEeCCCCcccccChhhhhccccccc
Confidence 9995433334554 88899999999999998555 554 3 777 8889988877432211 01111 111
Q ss_pred eeeeccccCCCCCccccccCCccccceeecCC-------------CCCchhhHHHhcccccccccccccccc-cCcc--c
Q 045843 653 SILVGYNQRSSPHMEFDFSGCSAEKYLRFADG-------------EGFPDAVVKILEQACAFELIGHRTAAN-LSDF--G 716 (913)
Q Consensus 653 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l-------------~~l~~~~L~~L~i~~~l~l~~~~~~~~-l~~~--~ 716 (913)
..+. +..+ .+..+ ..+ ..|+.|.+. .+.+.. .+.. .
T Consensus 183 ~~L~-------------l~~n------~l~~~~~~~~~~~~~~~~~~~--~~L~~L~Ls-------~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 183 TLLR-------------LSSI------TLQDMNEYWLGWEKCGNPFKN--TSITTLDLS-------GNGFKESMAKRFFD 234 (455)
T ss_dssp EEEE-------------CTTC------BCTTCSTTCTTHHHHCCTTTT--CEEEEEECT-------TSCCCHHHHHHHHH
T ss_pred cccc-------------cccC------cccccchhhcccccccccccc--ceeeeEecC-------CCcccccchhhhhc
Confidence 1111 0000 01111 011 123333332 111111 1111 0
Q ss_pred cCcccCcceEEecccCCceEeecC---------CCcccccccCCceEecccccccchhccccccccccccccEEeeccCc
Q 045843 717 ANKFGDVEACIVEDCNEMISIIDG---------NLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCH 787 (913)
Q Consensus 717 ~~~l~~L~~L~l~~~~~~~~~~~~---------~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~ 787 (913)
....++|+.|.++++......+.. .+. ...+++|+.|+++++.-.. . .+.....+++|+.|+|++ +
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~-~--~~~~~~~l~~L~~L~Ls~-n 309 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK-GLEASGVKTCDLSKSKIFA-L--LKSVFSHFTDLEQLTLAQ-N 309 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG-GGTTSCCCEEECCSSCCCE-E--CTTTTTTCTTCCEEECTT-S
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccc-cccccCceEEEecCccccc-c--chhhcccCCCCCEEECCC-C
Confidence 011256777777765332111110 011 0124689999997643221 1 011124689999999999 4
Q ss_pred cccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCc
Q 045843 788 GMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACD 867 (913)
Q Consensus 788 ~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~ 867 (913)
.+..+ ++..+.++++|+.|++++|.. +.++. .....+++|+.|+++++ .+..+....+..+++|+.|++++|
T Consensus 310 ~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N- 381 (455)
T 3v47_A 310 EINKI-DDNAFWGLTHLLKLNLSQNFL-GSIDS----RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN- 381 (455)
T ss_dssp CCCEE-CTTTTTTCTTCCEEECCSSCC-CEECG----GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred ccccc-ChhHhcCcccCCEEECCCCcc-CCcCh----hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-
Confidence 56666 336788999999999999864 33321 25678899999999998 456554336778999999999996
Q ss_pred ccccccCC-CcCCCCcceeeeccccccc
Q 045843 868 ELRNFPST-IENASKLRGIQCNQAWWSS 894 (913)
Q Consensus 868 ~L~~lP~~-~~~l~~L~~l~~~~~~~~~ 894 (913)
.++.+|.. +..+++|+.+++..+.|..
T Consensus 382 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 382 QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCCHhHhccCCcccEEEccCCCccc
Confidence 78888875 4689999999999887753
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=2.6e-20 Score=224.56 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=106.0
Q ss_pred hhhceeeeccccccCCCC--CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeec
Q 045843 506 EVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFL 582 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L 582 (913)
.++++|++.+|.+..++. ...+++|++|++++|.+..+++..|.++++|++|+|++|.++.+|. .|+++.+|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 689999999999988876 3788999999999999999988888999999999999999999986 5999999999999
Q ss_pred CCccCccccC-hhhhccccCCEEecCCCcCCcCC-Ccc-ccccccccccccceeecccc
Q 045843 583 NNCCQLMRLP-AEVGDLHNLEILDLSHTGICCLP-SEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 583 ~~c~~l~~lP-~~i~~L~~L~~L~L~~~~~~~lp-~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
++| .+..+| ..++++++|++|++++|.+..++ ..+ .++ +|++|++..+
T Consensus 105 ~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~L~~n 155 (680)
T 1ziw_A 105 MSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE-------NLQELLLSNN 155 (680)
T ss_dssp CSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT-------TCCEEECCSS
T ss_pred CCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccc-------cCCEEEccCC
Confidence 994 566665 57999999999999999985544 444 666 6777766655
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=2e-20 Score=222.48 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=80.8
Q ss_pred hhhhhceeeeccccccCCCC--CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCccee
Q 045843 504 EWEVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKAL 580 (913)
Q Consensus 504 ~~~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L 580 (913)
...+++.|++.+|.+..+.+ ...+++|++|++++|.+..+++..|.++++|++|++++|.++.+ |..++++++|++|
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence 34578888888887776643 36788888888888887777666678888888888888888876 5667888888888
Q ss_pred ecCCccCccccC-hhhhccccCCEEecCCCcCCcCC
Q 045843 581 FLNNCCQLMRLP-AEVGDLHNLEILDLSHTGICCLP 615 (913)
Q Consensus 581 ~L~~c~~l~~lP-~~i~~L~~L~~L~L~~~~~~~lp 615 (913)
++++ +.+..++ ..+..+++|++|++++|.+..++
T Consensus 135 ~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 135 YLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp ECCS-SCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred ECCC-CcccccCcccccCCcccCEEEcccCcccccC
Confidence 8888 4555542 23444778888888887775553
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=226.20 Aligned_cols=126 Identities=23% Similarity=0.232 Sum_probs=99.7
Q ss_pred hhhhceeeeccccccCCCC--CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceee
Q 045843 505 WEVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALF 581 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~ 581 (913)
+..+++|++++|.+..++. ...+++|++|++++|.++.+++..|.++++|++|+|++|.++.+| ..|+++.+|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 3568888888888877764 377888999999888888888777888889999999988888765 6788888888888
Q ss_pred cCCccCccccCh-hhhccccCCEEecCCCcCC--cCCCcc-ccccccccccccceeecccc
Q 045843 582 LNNCCQLMRLPA-EVGDLHNLEILDLSHTGIC--CLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 582 L~~c~~l~~lP~-~i~~L~~L~~L~L~~~~~~--~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+++ +.+..+|. .++++++|++|++++|.+. .+|..+ +++ +|++|++..+
T Consensus 107 L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-------~L~~L~l~~n 159 (570)
T 2z63_A 107 AVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-------NLEHLDLSSN 159 (570)
T ss_dssp CTT-SCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-------TCCEEECTTS
T ss_pred ccc-cccccCCCccccccccccEEecCCCccceecChhhhcccC-------CCCEEeCcCC
Confidence 888 56777765 5888888888888888884 367766 677 6777766655
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=4.8e-21 Score=233.28 Aligned_cols=361 Identities=15% Similarity=0.094 Sum_probs=192.0
Q ss_pred hhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccc-ccCccccCccCcceeecCC
Q 045843 506 EVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIK-LLPSSISSLTNLKALFLNN 584 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~-~lp~~i~~L~~L~~L~L~~ 584 (913)
.+++.|++.+|.+........+++|++|++++|.+...++. |..+++|++|++++|.++ .+|..++++++|++|++++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 35566666666655444445666666666666655554433 466666666666666665 4556666666666666666
Q ss_pred ccCccccChhhhccccCCEEecCCCcC-CcCCCcc-c-cccccccccccceeeccccccccc--CCCCCccceeeeeccc
Q 045843 585 CCQLMRLPAEVGDLHNLEILDLSHTGI-CCLPSEI-D-LTTLCFYFPNVGLLQNFINASKSW--NGNSNFRSFSILVGYN 659 (913)
Q Consensus 585 c~~l~~lP~~i~~L~~L~~L~L~~~~~-~~lp~~i-~-L~~L~~~~~~L~~L~l~~~~~~~~--~~~~~l~~l~~l~~~~ 659 (913)
|.....+|.. .+++|++|++++|.+ ..+|..+ . ++ +|++|++..+..... ..+..+..|+.+.-..
T Consensus 257 n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~-------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD-------TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT-------TCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC-------cCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 4333344432 566666666666665 3555554 2 24 556665555432111 1112222222221111
Q ss_pred cCCCCCcccc-ccCCccccceeecC--CC-CCchhhHHHhc-ccccccccccccccccCccccCc--ccCcceEEecccC
Q 045843 660 QRSSPHMEFD-FSGCSAEKYLRFAD--GE-GFPDAVVKILE-QACAFELIGHRTAANLSDFGANK--FGDVEACIVEDCN 732 (913)
Q Consensus 660 ~~~~~~~~~~-~~~~~~~~~l~l~~--l~-~l~~~~L~~L~-i~~~l~l~~~~~~~~l~~~~~~~--l~~L~~L~l~~~~ 732 (913)
+.....+... +..++.+..+.+.. +. .+| ..+..+. -...+.+..+.....++.. +.. +++|+.|++++|.
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCC-TTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCcccc-HHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCc
Confidence 1000000000 11111122211111 10 112 2222221 1112222222211122222 122 5677888887754
Q ss_pred CceEeecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccC
Q 045843 733 EMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDC 812 (913)
Q Consensus 733 ~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~ 812 (913)
.. ..++..+. .+++|+.|+++++.-... .+.....+++|+.|+|++|. +...+| ..+..+++|+.|++++|
T Consensus 406 l~-~~~p~~l~---~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 406 FT-GKIPPTLS---NCSELVSLHLSFNYLSGT---IPSSLGSLSKLRDLKLWLNM-LEGEIP-QELMYVKTLETLILDFN 476 (768)
T ss_dssp EE-EECCGGGG---GCTTCCEEECCSSEEESC---CCGGGGGCTTCCEEECCSSC-CCSCCC-GGGGGCTTCCEEECCSS
T ss_pred cc-cccCHHHh---cCCCCCEEECcCCcccCc---ccHHHhcCCCCCEEECCCCc-ccCcCC-HHHcCCCCceEEEecCC
Confidence 43 33333344 577888888866432111 01122367788888888854 443323 56777888888888887
Q ss_pred chhHhhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeeccccc
Q 045843 813 KEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWW 892 (913)
Q Consensus 813 ~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~ 892 (913)
.....++. ....+++|+.|++++|.....++. .+..+++|+.|++++|.....+|..+..+++|+.++...+.+
T Consensus 477 ~l~~~~p~-----~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 477 DLTGEIPS-----GLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCCSCCCG-----GGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cccCcCCH-----HHhcCCCCCEEEccCCccCCcCCh-HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 75555543 566778888888888765445665 567788888888888866667888788888888888877655
Q ss_pred c
Q 045843 893 S 893 (913)
Q Consensus 893 ~ 893 (913)
.
T Consensus 551 ~ 551 (768)
T 3rgz_A 551 N 551 (768)
T ss_dssp E
T ss_pred C
Confidence 4
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=7.1e-21 Score=209.52 Aligned_cols=283 Identities=13% Similarity=0.165 Sum_probs=213.3
Q ss_pred HHhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceee
Q 045843 502 EEEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALF 581 (913)
Q Consensus 502 ~~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~ 581 (913)
....++++.|++.+|.+..++....+++|++|++++|.++.++. |..+++|++|++++|.+..+|. +.++++|++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-LANLTKMYSLN 138 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence 34567899999999999988888899999999999999888764 7999999999999999999887 99999999999
Q ss_pred cCCccCccccChhhhccccCCEEecCCCcCCcCCCccccccccccccccceeecccccccccCCCCCccceeeeeccccC
Q 045843 582 LNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQR 661 (913)
Q Consensus 582 L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~ 661 (913)
+++|..+..+|. ++.+++|++|++++|.+..++....++ +|+.|++..+......
T Consensus 139 l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~----------------- 193 (347)
T 4fmz_A 139 LGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLT-------DLYSLSLNYNQIEDIS----------------- 193 (347)
T ss_dssp CTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCT-------TCSEEECTTSCCCCCG-----------------
T ss_pred CCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCC-------CCCEEEccCCcccccc-----------------
Confidence 999767776654 999999999999999987666522677 8999998877221110
Q ss_pred CCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCC
Q 045843 662 SSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGN 741 (913)
Q Consensus 662 ~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 741 (913)
.+..+ ..++.+.+. .+....++. +..+++|++|++++|... ....
T Consensus 194 ---------------------~~~~l--~~L~~L~l~-------~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~-- 238 (347)
T 4fmz_A 194 ---------------------PLASL--TSLHYFTAY-------VNQITDITP--VANMTRLNSLKIGNNKIT-DLSP-- 238 (347)
T ss_dssp ---------------------GGGGC--TTCCEEECC-------SSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--
T ss_pred ---------------------cccCC--Cccceeecc-------cCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--
Confidence 01111 233333333 233333333 367889999999986543 3332
Q ss_pred CcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcC
Q 045843 742 LTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEA 821 (913)
Q Consensus 742 l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~ 821 (913)
+. .+++|+.|+++++. +... .....+++|+.|++++| .+.++ +.+..+++|+.|++++|......+.
T Consensus 239 ~~---~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~- 305 (347)
T 4fmz_A 239 LA---NLSQLTWLEIGTNQ-ISDI----NAVKDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSLFLNNNQLGNEDME- 305 (347)
T ss_dssp GT---TCTTCCEEECCSSC-CCCC----GGGTTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCGGGHH-
T ss_pred hh---cCCCCCEEECCCCc-cCCC----hhHhcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEEECcCCcCCCcChh-
Confidence 34 68999999997753 2211 11246899999999995 67777 6788999999999999975544433
Q ss_pred CcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCc
Q 045843 822 GSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACD 867 (913)
Q Consensus 822 ~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~ 867 (913)
....+++|+.|++++|+ ++.++. ...+++|+.|++++|+
T Consensus 306 ----~l~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 306 ----VIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp ----HHHTCTTCSEEECCSSS-CCCCGG--GGGCTTCSEESSSCC-
T ss_pred ----HhhccccCCEEEccCCc-cccccC--hhhhhccceeehhhhc
Confidence 45678999999999986 555544 6778999999999974
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=1.2e-20 Score=211.06 Aligned_cols=289 Identities=12% Similarity=0.148 Sum_probs=223.5
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCccCcccc-ChhhhccccCC
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCCQLMRL-PAEVGDLHNLE 602 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~l-P~~i~~L~~L~ 602 (913)
..+++++.|+++++.+..+|+.+|..+++|++|+|++|.++.+|. .++++.+|++|+|++| .+..+ |..++++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 567899999999999999999999999999999999999998764 7999999999999994 56666 45589999999
Q ss_pred EEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCcccccee
Q 045843 603 ILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLR 680 (913)
Q Consensus 603 ~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 680 (913)
+|++++|.+..+|..+ .++ +|++|++..+..... .
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~-------~L~~L~L~~n~l~~~------------------------------------~ 157 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTP-------KLTTLSMSNNNLERI------------------------------------E 157 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCT-------TCCEEECCSSCCCBC------------------------------------C
T ss_pred EEECCCCccCcCCHHHhcCCC-------CCcEEECCCCccCcc------------------------------------C
Confidence 9999999999999876 788 999999887722110 0
Q ss_pred ecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEeccccc
Q 045843 681 FADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLP 760 (913)
Q Consensus 681 l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 760 (913)
...+..+ ..|+.|.+. .+.+..+ .+..+++|+.|.++++... .+ . .+++|+.|++++..
T Consensus 158 ~~~~~~l--~~L~~L~l~-------~n~l~~~---~~~~l~~L~~L~l~~n~l~-~~-----~---~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 158 DDTFQAT--TSLQNLQLS-------SNRLTHV---DLSLIPSLFHANVSYNLLS-TL-----A---IPIAVEELDASHNS 216 (390)
T ss_dssp TTTTSSC--TTCCEEECC-------SSCCSBC---CGGGCTTCSEEECCSSCCS-EE-----E---CCSSCSEEECCSSC
T ss_pred hhhccCC--CCCCEEECC-------CCcCCcc---ccccccccceeeccccccc-cc-----C---CCCcceEEECCCCe
Confidence 1112333 345555554 3333333 2467889999999885332 22 1 46789999997643
Q ss_pred ccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeeccc
Q 045843 761 KLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLIN 840 (913)
Q Consensus 761 ~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~ 840 (913)
- ... +...+++|+.|++++ +.+.+. +.+..+++|+.|++++|......+. ....+++|+.|++++
T Consensus 217 l-~~~-----~~~~~~~L~~L~l~~-n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 217 I-NVV-----RGPVNVELTILKLQH-NNLTDT---AWLLNYPGLVEVDLSYNELEKIMYH-----PFVKMQRLERLYISN 281 (390)
T ss_dssp C-CEE-----ECCCCSSCCEEECCS-SCCCCC---GGGGGCTTCSEEECCSSCCCEEESG-----GGTTCSSCCEEECCS
T ss_pred e-eec-----cccccccccEEECCC-CCCccc---HHHcCCCCccEEECCCCcCCCcChh-----HccccccCCEEECCC
Confidence 2 211 113568999999999 566766 6889999999999999874443333 567899999999999
Q ss_pred ccccccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeecccccccCC
Q 045843 841 LPKLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSSLV 896 (913)
Q Consensus 841 ~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~l~ 896 (913)
+ .++.++. ....+|+|+.|++++| .++.+|..+..+++|++++...+-+..+.
T Consensus 282 n-~l~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 282 N-RLVALNL-YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp S-CCCEEEC-SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred C-cCcccCc-ccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCccceeC
Confidence 7 5777766 5677999999999997 78899988888999999999988776664
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=9.9e-21 Score=223.40 Aligned_cols=374 Identities=17% Similarity=0.135 Sum_probs=213.9
Q ss_pred HhhhhhceeeeccccccCCCC--CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcce
Q 045843 503 EEWEVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKA 579 (913)
Q Consensus 503 ~~~~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~ 579 (913)
...+++++|++.+|.+..++. ...+++|++|++++|.++.+++..|.++++|++|++++|.++.+|. .++++.+|++
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence 345689999999999988765 3789999999999999999988888999999999999999998876 6999999999
Q ss_pred eecCCccCccc--cChhhhccccCCEEecCCCcCCcCCC-cc-ccccc-------ccc-------------ccccceeec
Q 045843 580 LFLNNCCQLMR--LPAEVGDLHNLEILDLSHTGICCLPS-EI-DLTTL-------CFY-------------FPNVGLLQN 635 (913)
Q Consensus 580 L~L~~c~~l~~--lP~~i~~L~~L~~L~L~~~~~~~lp~-~i-~L~~L-------~~~-------------~~~L~~L~l 635 (913)
|++++| .+.. +|..++++++|++|++++|.+..++. .+ .++.| ... ..+|+.|++
T Consensus 129 L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l 207 (570)
T 2z63_A 129 LNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207 (570)
T ss_dssp EECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred EecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEec
Confidence 999994 5554 79999999999999999999866654 33 33311 100 012344433
Q ss_pred ccccccc------cCCCCCcccee-----------------------------eeecccc-CCCCCccccccCCccccce
Q 045843 636 FINASKS------WNGNSNFRSFS-----------------------------ILVGYNQ-RSSPHMEFDFSGCSAEKYL 679 (913)
Q Consensus 636 ~~~~~~~------~~~~~~l~~l~-----------------------------~l~~~~~-~~~~~~~~~~~~~~~~~~l 679 (913)
..+.... ..+...+.... .+..... .......-.+..+.....+
T Consensus 208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L 287 (570)
T 2z63_A 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287 (570)
T ss_dssp ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence 3221000 00000000000 0000000 0000000000001111111
Q ss_pred eec------------------------CCCCCch---hhHHHhcccc----------------cccccccccccccC--c
Q 045843 680 RFA------------------------DGEGFPD---AVVKILEQAC----------------AFELIGHRTAANLS--D 714 (913)
Q Consensus 680 ~l~------------------------~l~~l~~---~~L~~L~i~~----------------~l~l~~~~~~~~l~--~ 714 (913)
.+. .+..+|. ..|+.|.+.. .+.+. .+...... .
T Consensus 288 ~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~ 366 (570)
T 2z63_A 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS-RNGLSFKGCCS 366 (570)
T ss_dssp EEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECC-SSCCBEEEEEE
T ss_pred EecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCc-CCccCcccccc
Confidence 110 0011110 0111111110 00000 00000000 0
Q ss_pred cccCcccCcceEEecccCCceEeecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCc
Q 045843 715 FGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFS 794 (913)
Q Consensus 715 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~ 794 (913)
..+..+++|++|++++|... ..... +. .+++|+.|+++++.-..... ......+++|+.|++++|. +....
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~-~~~~~-~~---~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~- 437 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVI-TMSSN-FL---GLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTH-TRVAF- 437 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEE-EEEEE-EE---TCTTCCEEECTTSEEESCTT--SCTTTTCTTCCEEECTTSC-CEECC-
T ss_pred ccccccCccCEEECCCCccc-ccccc-cc---ccCCCCEEEccCCccccccc--hhhhhcCCCCCEEeCcCCc-ccccc-
Confidence 01223444555555443222 22222 23 45666666665432111000 0112367888888888854 44432
Q ss_pred hHHHhhcCCCcEEEEccCchhH-hhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCccccccc
Q 045843 795 EEIIFQLNQIQYLQVEDCKEME-EIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFP 873 (913)
Q Consensus 795 ~~~l~~l~~L~~L~l~~~~~l~-~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP 873 (913)
+..+.++++|+.|++++|.... .++. ....+++|+.|++++|. ++.+....+..+++|+.|++++| .++.+|
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~-----~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPD-----IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECS-----CCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred hhhhhcCCcCcEEECcCCcCccccchh-----hhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCC
Confidence 3567888999999998887542 3443 66788999999999984 55553326678899999999997 677776
Q ss_pred CC-CcCCCCcceeeeccccccc
Q 045843 874 ST-IENASKLRGIQCNQAWWSS 894 (913)
Q Consensus 874 ~~-~~~l~~L~~l~~~~~~~~~ 894 (913)
.. +..+++|+.+++..+.|..
T Consensus 511 ~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 511 DGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCBCC
T ss_pred HHHhhcccCCcEEEecCCcccC
Confidence 54 6789999999999887754
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=6.6e-21 Score=232.08 Aligned_cols=113 Identities=23% Similarity=0.277 Sum_probs=67.7
Q ss_pred hhhceeeecccccc-CCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccc-ccCcc-ccCccCccee
Q 045843 506 EVANRISLIRMCLS-TLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIK-LLPSS-ISSLTNLKAL 580 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~-~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~-~lp~~-i~~L~~L~~L 580 (913)
.+++.|++.+|.+. .+|.. ..+++|++|++++|.+....+..|..+++|++|++++|.+. .+|.. ++++++|++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 45666666666655 44443 22466666666666665444444566666666666666665 66654 6666666666
Q ss_pred ecCCccCccccChhhhccc-cCCEEecCCCcC-CcCCCcc
Q 045843 581 FLNNCCQLMRLPAEVGDLH-NLEILDLSHTGI-CCLPSEI 618 (913)
Q Consensus 581 ~L~~c~~l~~lP~~i~~L~-~L~~L~L~~~~~-~~lp~~i 618 (913)
++++|.....+|..++++. +|++|++++|.+ ..+|..+
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 6666433336666666665 666666666665 4444443
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=5.4e-21 Score=231.20 Aligned_cols=112 Identities=19% Similarity=0.217 Sum_probs=66.7
Q ss_pred ccccccEEeeccCccccccCchHHH-------hhcCCCcEEEEccCchhHhhhcCCcccCCC--CCCccceeeccccccc
Q 045843 774 SLIMLETLILKRCHGMKTLFSEEII-------FQLNQIQYLQVEDCKEMEEIIEAGSAVDSR--AFPKLKSFQLINLPKL 844 (913)
Q Consensus 774 ~l~~L~~L~L~~c~~l~~l~~~~~l-------~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~--~f~~L~~L~l~~~~~l 844 (913)
.+++|+.|+|++| .+..+ |...+ .++++|+.|+|++|. +..++. ... .+++|+.|+|+++ .+
T Consensus 695 ~l~~L~~L~Ls~N-~L~~i-p~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~-----~l~~~~l~~L~~L~Ls~N-~L 765 (876)
T 4ecn_A 695 TGSPISTIILSNN-LMTSI-PENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSD-----DFRATTLPYLSNMDVSYN-CF 765 (876)
T ss_dssp TTCCCSEEECCSC-CCSCC-CTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCG-----GGSTTTCTTCCEEECCSS-CC
T ss_pred cCCCCCEEECCCC-cCCcc-ChHHhccccccccccCCccEEECCCCC-CccchH-----HhhhccCCCcCEEEeCCC-CC
Confidence 3566666776663 44443 21211 123366777776664 334442 333 6677777777776 34
Q ss_pred ccccccCccCCCCccEEeeec------CcccccccCCCcCCCCcceeeecccccccC
Q 045843 845 SSICHNMSLAWPLLETITIKA------CDELRNFPSTIENASKLRGIQCNQAWWSSL 895 (913)
Q Consensus 845 ~~i~~~~~~~~p~L~~L~i~~------C~~L~~lP~~~~~l~~L~~l~~~~~~~~~l 895 (913)
..++. ....+++|+.|++++ |.....+|..+.++++|+.|++..+-+..+
T Consensus 766 ~~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I 821 (876)
T 4ecn_A 766 SSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821 (876)
T ss_dssp SSCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred Cccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc
Confidence 55655 555677777777765 444566677777777777777777666444
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=4.6e-21 Score=220.79 Aligned_cols=296 Identities=17% Similarity=0.176 Sum_probs=215.6
Q ss_pred hhhhceeeeccccccCCCC--CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceee
Q 045843 505 WEVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALF 581 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~ 581 (913)
+..++.|++.+|.+..++. ...+++|++|++++|.+..+++..|.++++|++|+|++|.++.+|.. +.++.+|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 3578999999999988764 37899999999999999998777789999999999999999999864 78999999999
Q ss_pred cCCccCccccChhhhccccCCEEecCCCcCCcCCC-cc-ccccccccccccceeecccccccccCCCCCccceeeeeccc
Q 045843 582 LNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPS-EI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYN 659 (913)
Q Consensus 582 L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~-~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~ 659 (913)
|++|......|..+.++++|++|++++|.+..++. .+ .++ +|++|++..+.....
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~l~~~---------------- 167 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-------SLEQLTLEKCNLTSI---------------- 167 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT-------TCCEEEEESCCCSSC----------------
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC-------CCCEEECCCCcCccc----------------
Confidence 99954444457789999999999999999966544 44 777 999999887621110
Q ss_pred cCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeec
Q 045843 660 QRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIID 739 (913)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~ 739 (913)
....+..+ ..|+.|.+. .+.+..++...+..+++|+.|++++|+....+..
T Consensus 168 --------------------~~~~l~~l--~~L~~L~l~-------~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 168 --------------------PTEALSHL--HGLIVLRLR-------HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp --------------------CHHHHTTC--TTCCEEEEE-------SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred --------------------ChhHhccc--CCCcEEeCC-------CCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 00011112 233344443 3334444444467888999999999877745444
Q ss_pred CCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhh
Q 045843 740 GNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEII 819 (913)
Q Consensus 740 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~ 819 (913)
..+ ...+|+.|+++++. +.... ......+++|+.|+|++ +.+..+ ++..+.++++|+.|++++|......+
T Consensus 219 ~~~----~~~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~Ls~-n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 219 NCL----YGLNLTSLSITHCN-LTAVP--YLAVRHLVYLRFLNLSY-NPISTI-EGSMLHELLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp TTT----TTCCCSEEEEESSC-CCSCC--HHHHTTCTTCCEEECCS-SCCCEE-CTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred ccc----cCccccEEECcCCc-ccccC--HHHhcCccccCeeECCC-CcCCcc-ChhhccccccCCEEECCCCccceECH
Confidence 322 34589999997642 22111 01123688999999998 456666 33567889999999999886443323
Q ss_pred cCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCc
Q 045843 820 EAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACD 867 (913)
Q Consensus 820 ~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~ 867 (913)
. .+..+++|+.|+++++ .++.++...+..+++|+.|++++++
T Consensus 290 ~-----~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 290 Y-----AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp T-----TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred H-----HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 2 5667899999999987 5777766455678999999998875
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=6.4e-21 Score=226.75 Aligned_cols=345 Identities=12% Similarity=0.073 Sum_probs=236.1
Q ss_pred HHhhhhhceeeeccccccC------------------CCCC-C--CCCceeEEeeccCccccCchHHHhcCCcccEEecc
Q 045843 502 EEEWEVANRISLIRMCLST------------------LPKR-P--KCCRILTLLLQESSLAELPASFFGYMCSLQLLDLH 560 (913)
Q Consensus 502 ~~~~~~~~~Lsl~~~~~~~------------------l~~~-~--~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs 560 (913)
.....+++.|++.+|.+.. +|.. . .+++|++|++++|.+....+..|.++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 3445689999999999888 8876 4 69999999999997665444556999999999999
Q ss_pred CCc-cc--ccCccccCc------cCcceeecCCccCccccCh--hhhccccCCEEecCCCcCC-cCCCcc-ccccccccc
Q 045843 561 DTK-IK--LLPSSISSL------TNLKALFLNNCCQLMRLPA--EVGDLHNLEILDLSHTGIC-CLPSEI-DLTTLCFYF 627 (913)
Q Consensus 561 ~~~-i~--~lp~~i~~L------~~L~~L~L~~c~~l~~lP~--~i~~L~~L~~L~L~~~~~~-~lp~~i-~L~~L~~~~ 627 (913)
+|+ ++ .+|..++++ ++|++|++++ +.+..+|. .++++++|++|++++|.+. .+| .+ .++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~------ 353 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI------ 353 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE------
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC------
Confidence 998 87 489888887 9999999999 56779998 8999999999999999995 999 66 777
Q ss_pred cccceeecccccccccC-CCCCccc-eeeeeccccCCCCCccccccCCccccceeec-CCCCCchhhHHHhccccccccc
Q 045843 628 PNVGLLQNFINASKSWN-GNSNFRS-FSILVGYNQRSSPHMEFDFSGCSAEKYLRFA-DGEGFPDAVVKILEQACAFELI 704 (913)
Q Consensus 628 ~~L~~L~l~~~~~~~~~-~~~~l~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~-~l~~l~~~~L~~L~i~~~l~l~ 704 (913)
+|++|++..+...... .+..+.. |+.+.-..+. .. .+. .+...+-..|+.|.+.
T Consensus 354 -~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~--------------l~--~lp~~~~~~~l~~L~~L~Ls------ 410 (636)
T 4eco_A 354 -KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK--------------LK--YIPNIFDAKSVSVMSAIDFS------ 410 (636)
T ss_dssp -EESEEECCSSEEEECCTTSEEECTTCCEEECCSSC--------------CS--SCCSCCCTTCSSCEEEEECC------
T ss_pred -CCCEEECCCCccccccHhhhhhcccCcEEEccCCc--------------Cc--ccchhhhhcccCccCEEECc------
Confidence 8888888877433221 1222222 3332211110 00 000 1111100134444443
Q ss_pred ccccccc-cCccccC-------cccCcceEEecccCCceEeecCCCcccccccCCceEecccccccchhcccccc-----
Q 045843 705 GHRTAAN-LSDFGAN-------KFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQ----- 771 (913)
Q Consensus 705 ~~~~~~~-l~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----- 771 (913)
.+.+.. .+.. +. .+++|+.|++++|... .++...+. .+++|+.|+++++.-. ........
T Consensus 411 -~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~---~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~ 483 (636)
T 4eco_A 411 -YNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQIS-KFPKELFS---TGSPLSSINLMGNMLT-EIPKNSLKDENEN 483 (636)
T ss_dssp -SSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHH---TTCCCSEEECCSSCCS-BCCSSSSEETTEE
T ss_pred -CCcCCCcchhh-hcccccccccCCCCCEEECcCCccC-cCCHHHHc---cCCCCCEEECCCCCCC-CcCHHHhcccccc
Confidence 222222 2221 23 5678999999986433 33332122 4789999999764322 11111000
Q ss_pred ccccccccEEeeccCccccccCchHHHh--hcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeeccc------ccc
Q 045843 772 SGSLIMLETLILKRCHGMKTLFSEEIIF--QLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLIN------LPK 843 (913)
Q Consensus 772 ~~~l~~L~~L~L~~c~~l~~l~~~~~l~--~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~------~~~ 843 (913)
...+++|+.|+|++| .++.+ | ..+. .+++|+.|++++|.... ++. ....+++|+.|++++ +..
T Consensus 484 ~~~l~~L~~L~Ls~N-~l~~l-p-~~~~~~~l~~L~~L~Ls~N~l~~-ip~-----~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 484 FKNTYLLTSIDLRFN-KLTKL-S-DDFRATTLPYLVGIDLSYNSFSK-FPT-----QPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp CTTGGGCCEEECCSS-CCCBC-C-GGGSTTTCTTCCEEECCSSCCSS-CCC-----GGGGCSSCCEEECCSCBCTTCCBC
T ss_pred ccccCCccEEECcCC-cCCcc-C-hhhhhccCCCcCEEECCCCCCCC-cCh-----hhhcCCCCCEEECCCCcccccCcc
Confidence 012349999999994 56666 3 4454 89999999999987444 654 667899999999965 333
Q ss_pred cccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeecccccccCCC
Q 045843 844 LSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSSLVW 897 (913)
Q Consensus 844 l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~l~w 897 (913)
...++. .+..+++|+.|++++| .++.+|..+. ++|+.+++..+.|..+..
T Consensus 555 ~~~~p~-~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 555 LREWPE-GITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CCCCCT-TGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred cccChH-HHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCCCccccH
Confidence 445555 6778999999999997 5599998765 799999999998877664
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=2.7e-20 Score=211.73 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=105.4
Q ss_pred CHHhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCccee
Q 045843 501 SEEEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKAL 580 (913)
Q Consensus 501 ~~~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L 580 (913)
......+++.|++.+|.+..+|....+++|++|++++|.++.++ |..+++|++|++++|.++.+| ++++++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 34556789999999999998887788999999999999998886 688999999999999999886 8999999999
Q ss_pred ecCCccCccccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccc
Q 045843 581 FLNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 581 ~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
++++ +.+..+| ++++++|++|++++|.+..+| + .++ +|+.|++..+
T Consensus 112 ~L~~-N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~-------~L~~L~l~~n 158 (457)
T 3bz5_A 112 NCDT-NKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNT-------QLTELDCHLN 158 (457)
T ss_dssp ECCS-SCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCT-------TCCEEECTTC
T ss_pred ECCC-CcCCeec--CCCCCcCCEEECCCCccceec--cccCC-------cCCEEECCCC
Confidence 9999 5777786 899999999999999997765 4 666 8888888877
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=5.6e-21 Score=227.27 Aligned_cols=323 Identities=13% Similarity=0.129 Sum_probs=188.4
Q ss_pred CCCCceeEEeeccCcccc------------------CchHHHh--cCCcccEEeccCCccc-ccCccccCccCcceeecC
Q 045843 525 PKCCRILTLLLQESSLAE------------------LPASFFG--YMCSLQLLDLHDTKIK-LLPSSISSLTNLKALFLN 583 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~------------------l~~~~f~--~l~~Lr~LdLs~~~i~-~lp~~i~~L~~L~~L~L~ 583 (913)
..+++|++|++++|.++. +|..+ . ++++|++|+|++|.+. .+|..++++++|++|+++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 467778888888777776 66654 5 7778888888877765 677777788888888887
Q ss_pred CccCcc--ccChhhhcc------ccCCEEecCCCcCCcCCC--cc-ccccccccccccceeeccccccc-ccCCCCCccc
Q 045843 584 NCCQLM--RLPAEVGDL------HNLEILDLSHTGICCLPS--EI-DLTTLCFYFPNVGLLQNFINASK-SWNGNSNFRS 651 (913)
Q Consensus 584 ~c~~l~--~lP~~i~~L------~~L~~L~L~~~~~~~lp~--~i-~L~~L~~~~~~L~~L~l~~~~~~-~~~~~~~l~~ 651 (913)
+|..+. .+|..++++ ++|++|++++|.+..+|. .+ .++ +|++|++..+... ....+..+..
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~-------~L~~L~L~~N~l~g~ip~~~~l~~ 354 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK-------KLGMLECLYNQLEGKLPAFGSEIK 354 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCT-------TCCEEECCSCCCEEECCCCEEEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCC-------CCCEEeCcCCcCccchhhhCCCCC
Confidence 754244 477777776 778888888877777777 55 677 7777777766433 2222222222
Q ss_pred eeeeeccccCCCCCccccccCCccccceee-cCCCCCchhh-HHHhcccccccccccccccccCccccCc--ccCcceEE
Q 045843 652 FSILVGYNQRSSPHMEFDFSGCSAEKYLRF-ADGEGFPDAV-VKILEQACAFELIGHRTAANLSDFGANK--FGDVEACI 727 (913)
Q Consensus 652 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l-~~l~~l~~~~-L~~L~i~~~l~l~~~~~~~~l~~~~~~~--l~~L~~L~ 727 (913)
|+.+.-. .+. .. .+ ..+..+ .. |+.|.+. .+.+..++.. +.. +++|+.|+
T Consensus 355 L~~L~L~-------------~N~-l~--~lp~~l~~l--~~~L~~L~Ls-------~N~l~~lp~~-~~~~~l~~L~~L~ 408 (636)
T 4eco_A 355 LASLNLA-------------YNQ-IT--EIPANFCGF--TEQVENLSFA-------HNKLKYIPNI-FDAKSVSVMSAID 408 (636)
T ss_dssp ESEEECC-------------SSE-EE--ECCTTSEEE--CTTCCEEECC-------SSCCSSCCSC-CCTTCSSCEEEEE
T ss_pred CCEEECC-------------CCc-cc--cccHhhhhh--cccCcEEEcc-------CCcCcccchh-hhhcccCccCEEE
Confidence 2222111 100 00 00 112222 12 4444443 3334445543 233 34677777
Q ss_pred ecccCCceEeecCCCc----ccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhh---
Q 045843 728 VEDCNEMISIIDGNLT----EGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQ--- 800 (913)
Q Consensus 728 l~~~~~~~~~~~~~l~----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~--- 800 (913)
+++|... ...+..+. ....+++|+.|+++++.- ..... .....+++|+.|+|++| .+..+ |...+..
T Consensus 409 Ls~N~l~-~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~--~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~~~~ 482 (636)
T 4eco_A 409 FSYNEIG-SVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPK--ELFSTGSPLSSINLMGN-MLTEI-PKNSLKDENE 482 (636)
T ss_dssp CCSSCTT-TTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCT--HHHHTTCCCSEEECCSS-CCSBC-CSSSSEETTE
T ss_pred CcCCcCC-CcchhhhcccccccccCCCCCEEECcCCcc-CcCCH--HHHccCCCCCEEECCCC-CCCCc-CHHHhccccc
Confidence 7775432 22111111 000245777777755321 11100 00124677888888874 44444 3222222
Q ss_pred ----cCCCcEEEEccCchhHhhhcCCcccCCC--CCCccceeecccccccccccccCccCCCCccEEeee------cCcc
Q 045843 801 ----LNQIQYLQVEDCKEMEEIIEAGSAVDSR--AFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIK------ACDE 868 (913)
Q Consensus 801 ----l~~L~~L~l~~~~~l~~i~~~~~~~~~~--~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~------~C~~ 868 (913)
+++|+.|++++|.. +.++. ... .+++|+.|+++++ .++.++. ....+++|+.|+++ +|..
T Consensus 483 ~~~~l~~L~~L~Ls~N~l-~~lp~-----~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKL-TKLSD-----DFRATTLPYLVGIDLSYN-SFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp ECTTGGGCCEEECCSSCC-CBCCG-----GGSTTTCTTCCEEECCSS-CCSSCCC-GGGGCSSCCEEECCSCBCTTCCBC
T ss_pred cccccCCccEEECcCCcC-CccCh-----hhhhccCCCcCEEECCCC-CCCCcCh-hhhcCCCCCEEECCCCcccccCcc
Confidence 23788888877763 35543 443 7788888888887 4555666 56678888888884 3445
Q ss_pred cccccCCCcCCCCcceeeecccccccC
Q 045843 869 LRNFPSTIENASKLRGIQCNQAWWSSL 895 (913)
Q Consensus 869 L~~lP~~~~~l~~L~~l~~~~~~~~~l 895 (913)
.+.+|..+..+++|++++...+-+..+
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l~~i 581 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDIRKV 581 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred cccChHHHhcCCCCCEEECCCCcCCcc
Confidence 667888888888888888888776554
No 30
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.8e-20 Score=203.83 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=97.2
Q ss_pred ccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccCcc
Q 045843 774 SLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSL 853 (913)
Q Consensus 774 ~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~ 853 (913)
.+++|+.|+|++| .+..+ + +.++.+++|+.|++++|...+.++. ....+++|+.|++++|..+..++. .+.
T Consensus 204 ~l~~L~~L~L~~N-~l~~l-~-~~l~~l~~L~~L~Ls~n~~~~~~p~-----~~~~l~~L~~L~L~~n~~~~~~p~-~~~ 274 (328)
T 4fcg_A 204 NLQNLKSLKIRNS-PLSAL-G-PAIHHLPKLEELDLRGCTALRNYPP-----IFGGRAPLKRLILKDCSNLLTLPL-DIH 274 (328)
T ss_dssp GCTTCCEEEEESS-CCCCC-C-GGGGGCTTCCEEECTTCTTCCBCCC-----CTTCCCCCCEEECTTCTTCCBCCT-TGG
T ss_pred CCCCCCEEEccCC-CCCcC-c-hhhccCCCCCEEECcCCcchhhhHH-----HhcCCCCCCEEECCCCCchhhcch-hhh
Confidence 5778888888884 45555 2 4688899999999999988877764 677899999999999988888887 678
Q ss_pred CCCCccEEeeecCcccccccCCCcCCCCcceeeecccccccCCCCc
Q 045843 854 AWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSSLVWPN 899 (913)
Q Consensus 854 ~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~l~w~~ 899 (913)
.+++|+.|+|++|+.++.+|..+.++++|+.+.+..++...+.+..
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~~ 320 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-----
T ss_pred cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhhh
Confidence 8999999999999999999999999999999999998888887543
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.7e-20 Score=218.90 Aligned_cols=289 Identities=12% Similarity=0.143 Sum_probs=223.4
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCccCccccCh-hhhccccCC
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCCQLMRLPA-EVGDLHNLE 602 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~lP~-~i~~L~~L~ 602 (913)
..+++++.|++++|.+..+|+.+|..+++|++|+|++|.++.+|. .|+++.+|++|+|++| .+..+|. .++++++|+
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCC
Confidence 467899999999999999999999999999999999999997764 8999999999999995 5666654 579999999
Q ss_pred EEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCcccccee
Q 045843 603 ILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLR 680 (913)
Q Consensus 603 ~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 680 (913)
+|++++|.+..+|..+ .++ +|++|++..+..... .
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~-------~L~~L~Ls~N~l~~~------------------------------------~ 163 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTP-------KLTTLSMSNNNLERI------------------------------------E 163 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCT-------TCCEEECCSSCCCBC------------------------------------C
T ss_pred EEEeeCCCCCCCCHHHhccCC-------CCCEEEeeCCcCCCC------------------------------------C
Confidence 9999999999898876 788 999999987721110 1
Q ss_pred ecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEeccccc
Q 045843 681 FADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLP 760 (913)
Q Consensus 681 l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 760 (913)
...+..+ ..|+.|.+. .+.+..+ .+..+++|+.|+++++... .+ . .+++|+.|+++++.
T Consensus 164 ~~~~~~l--~~L~~L~L~-------~N~l~~~---~~~~l~~L~~L~l~~n~l~-~l-----~---~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 164 DDTFQAT--TSLQNLQLS-------SNRLTHV---DLSLIPSLFHANVSYNLLS-TL-----A---IPIAVEELDASHNS 222 (597)
T ss_dssp TTTTTTC--TTCCEEECT-------TSCCSBC---CGGGCTTCSEEECCSSCCS-EE-----E---CCTTCSEEECCSSC
T ss_pred hhhhhcC--CcCcEEECc-------CCCCCCc---ChhhhhhhhhhhcccCccc-cc-----c---CCchhheeeccCCc
Confidence 1122333 345555554 3333333 2467889999999885332 22 2 46789999997743
Q ss_pred ccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeeccc
Q 045843 761 KLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLIN 840 (913)
Q Consensus 761 ~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~ 840 (913)
- .... ....++|+.|+|++| .+... +.+..+++|+.|++++|......+. .+..+++|+.|+|++
T Consensus 223 l-~~~~-----~~~~~~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 223 I-NVVR-----GPVNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSYNELEKIMYH-----PFVKMQRLERLYISN 287 (597)
T ss_dssp C-CEEE-----CSCCSCCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCEEESG-----GGTTCSSCCEEECTT
T ss_pred c-cccc-----cccCCCCCEEECCCC-CCCCC---hhhccCCCCCEEECCCCccCCCCHH-----HhcCccCCCEEECCC
Confidence 2 2111 124579999999994 56665 7889999999999999875444343 667899999999999
Q ss_pred ccccccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeecccccccCC
Q 045843 841 LPKLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSSLV 896 (913)
Q Consensus 841 ~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~l~ 896 (913)
+ .+..++. ....+|+|+.|++++| .+..+|..+..+++|+.+++..+-+..+.
T Consensus 288 N-~l~~l~~-~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 288 N-RLVALNL-YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp S-CCCEEEC-SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred C-CCCCCCc-ccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCCCCcC
Confidence 7 5777776 5677999999999997 77799988889999999999988776654
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=5.3e-20 Score=226.53 Aligned_cols=128 Identities=23% Similarity=0.244 Sum_probs=103.6
Q ss_pred hhhhhceeeeccccccCCCC--CCCCCceeEEeeccC-ccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcce
Q 045843 504 EWEVANRISLIRMCLSTLPK--RPKCCRILTLLLQES-SLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKA 579 (913)
Q Consensus 504 ~~~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~-~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~ 579 (913)
.+.++++|++++|.+..++. ...+++|++|++++| ....+++..|.++++|++|+|++|.+..+ |..|+++.+|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 45689999999999987653 378999999999999 55567677789999999999999999966 788999999999
Q ss_pred eecCCccCccccChh--hhccccCCEEecCCCcCCcCCC--cc-ccccccccccccceeecccc
Q 045843 580 LFLNNCCQLMRLPAE--VGDLHNLEILDLSHTGICCLPS--EI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 580 L~L~~c~~l~~lP~~--i~~L~~L~~L~L~~~~~~~lp~--~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
|+|++|.....+|.. +++|++|++|++++|.+..++. .+ +++ +|++|++..+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~-------~L~~L~Ls~N 158 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN-------SLKSIDFSSN 158 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS-------SCCEEEEESS
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC-------CCCEEECCCC
Confidence 999996444446665 8999999999999999955532 34 677 6666666655
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=4.9e-20 Score=211.24 Aligned_cols=321 Identities=15% Similarity=0.208 Sum_probs=210.6
Q ss_pred CCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEEe
Q 045843 526 KCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEILD 605 (913)
Q Consensus 526 ~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~ 605 (913)
.+++++.|++.++.+..++. |..+++|++|++++|.++.+|. ++++.+|++|++++ +.+..+|. ++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN-NQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEE
T ss_pred HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCC-CccccChh-hcCCCCCCEEE
Confidence 46789999999999888875 6899999999999999999987 99999999999999 57777776 99999999999
Q ss_pred cCCCcCCcCCCcc-ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecC-
Q 045843 606 LSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFAD- 683 (913)
Q Consensus 606 L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~- 683 (913)
+++|.+..+|. + .++ +|++|++..+.......+..+..|+.+....... .+ ..+..++.+..+.+..
T Consensus 119 L~~n~l~~~~~-~~~l~-------~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~--~~-~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLT-------NLNRLELSSNTISDISALSGLTSLQQLSFGNQVT--DL-KPLANLTTLERLDISSN 187 (466)
T ss_dssp CCSSCCCCCGG-GTTCT-------TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC--CC-GGGTTCTTCCEEECCSS
T ss_pred CCCCCCCCChH-HcCCC-------CCCEEECCCCccCCChhhccCCcccEeecCCccc--Cc-hhhccCCCCCEEECcCC
Confidence 99999977775 5 777 9999999888655444444444444433211110 00 0122222222222221
Q ss_pred -CCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEeccccccc
Q 045843 684 -GEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKL 762 (913)
Q Consensus 684 -l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l 762 (913)
+..++ .+..+.-...+.+. .+....+... ..+++|+.|++++|... .+ + .+. .+++|+.|+++++.-.
T Consensus 188 ~l~~~~--~l~~l~~L~~L~l~-~n~l~~~~~~--~~l~~L~~L~l~~n~l~-~~-~-~l~---~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 188 KVSDIS--VLAKLTNLESLIAT-NNQISDITPL--GILTNLDELSLNGNQLK-DI-G-TLA---SLTNLTDLDLANNQIS 256 (466)
T ss_dssp CCCCCG--GGGGCTTCSEEECC-SSCCCCCGGG--GGCTTCCEEECCSSCCC-CC-G-GGG---GCTTCSEEECCSSCCC
T ss_pred cCCCCh--hhccCCCCCEEEec-CCcccccccc--cccCCCCEEECCCCCcc-cc-h-hhh---cCCCCCEEECCCCccc
Confidence 11221 11111111112222 2223333332 55677777777775432 22 1 133 5778888888654321
Q ss_pred chhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeeccccc
Q 045843 763 MHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLP 842 (913)
Q Consensus 763 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~ 842 (913)
.. .+...+++|+.|++++| .+..+ +.+..+++|+.|++++|. ++.++ ....+++|+.|++++|.
T Consensus 257 ~~-----~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n~-l~~~~------~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 257 NL-----APLSGLTKLTELKLGAN-QISNI---SPLAGLTALTNLELNENQ-LEDIS------PISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CC-----GGGTTCTTCSEEECCSS-CCCCC---GGGTTCTTCSEEECCSSC-CSCCG------GGGGCTTCSEEECCSSC
T ss_pred cc-----hhhhcCCCCCEEECCCC-ccCcc---ccccCCCccCeEEcCCCc-ccCch------hhcCCCCCCEEECcCCc
Confidence 11 11246788888888884 55555 337788888888888876 33333 35678899999998884
Q ss_pred ccccccccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeeccccccc
Q 045843 843 KLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSS 894 (913)
Q Consensus 843 ~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~ 894 (913)
+..++. ...+++|+.|++++| .++.+| .+..+++|+.+++..+-+..
T Consensus 321 -l~~~~~--~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 321 -ISDISP--VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp -CSCCGG--GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCB
T ss_pred -CCCchh--hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCccCc
Confidence 555443 567899999999997 677775 46788999999988765543
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=3.6e-20 Score=217.48 Aligned_cols=127 Identities=21% Similarity=0.273 Sum_probs=98.1
Q ss_pred hhhceeeeccccccCCCC--CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceeec
Q 045843 506 EVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALFL 582 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~L 582 (913)
..+++|++.+|.+..++. ...+++|++|++++|.+..+++..|..+++|++|+|++|.++.+|.. ++++.+|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 578888888888877643 37788888888888888888877778888888888888888877654 888888888888
Q ss_pred CCccCcc--ccChhhhccccCCEEecCCCc-CCcCCC-cc-ccccccccccccceeecccccc
Q 045843 583 NNCCQLM--RLPAEVGDLHNLEILDLSHTG-ICCLPS-EI-DLTTLCFYFPNVGLLQNFINAS 640 (913)
Q Consensus 583 ~~c~~l~--~lP~~i~~L~~L~~L~L~~~~-~~~lp~-~i-~L~~L~~~~~~L~~L~l~~~~~ 640 (913)
++ +.+. ..|..++++++|++|++++|. +..+|. .+ .++ +|++|++..+..
T Consensus 106 s~-n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-------~L~~L~L~~n~l 160 (549)
T 2z81_A 106 MG-NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-------SLNELEIKALSL 160 (549)
T ss_dssp TT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-------EEEEEEEEETTC
T ss_pred CC-CcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc-------ccCeeeccCCcc
Confidence 88 4555 346678888888888888887 466764 34 677 777777776643
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=8.2e-20 Score=214.43 Aligned_cols=365 Identities=15% Similarity=0.129 Sum_probs=214.0
Q ss_pred eeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeecCCccCcc
Q 045843 511 ISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFLNNCCQLM 589 (913)
Q Consensus 511 Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L~~c~~l~ 589 (913)
.+..++.+..+|... .++|++|++++|.++.+++..|..+++|++|++++|.++.+| ..++++++|++|+|++ +.+.
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD-NHLS 87 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCC
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC-CccC
Confidence 345567778888753 379999999999999988777899999999999999999775 6799999999999999 5677
Q ss_pred ccChh-hhccccCCEEecCCCcCCc--CCCcc-ccccccccccccceeeccccc-cccc--CCCCCccceeeeeccccCC
Q 045843 590 RLPAE-VGDLHNLEILDLSHTGICC--LPSEI-DLTTLCFYFPNVGLLQNFINA-SKSW--NGNSNFRSFSILVGYNQRS 662 (913)
Q Consensus 590 ~lP~~-i~~L~~L~~L~L~~~~~~~--lp~~i-~L~~L~~~~~~L~~L~l~~~~-~~~~--~~~~~l~~l~~l~~~~~~~ 662 (913)
.+|.. ++++++|++|++++|.+.. +|..+ .++ +|++|++..+. .... ..+..+..|+.+.-..+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-------~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-------TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-------CccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 77665 9999999999999999964 45666 888 99999998874 2222 2344455555543322111
Q ss_pred CCCccccccCCccccceeec--CCCCCchhhHHHhcccccccccccccccccC--cc-ccCcccCcceEEecccCCceEe
Q 045843 663 SPHMEFDFSGCSAEKYLRFA--DGEGFPDAVVKILEQACAFELIGHRTAANLS--DF-GANKFGDVEACIVEDCNEMISI 737 (913)
Q Consensus 663 ~~~~~~~~~~~~~~~~l~l~--~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~--~~-~~~~l~~L~~L~l~~~~~~~~~ 737 (913)
.......+..+.....+.+. .+..+++.....+.-...+.+.++ ....++ .. ....+++|+.|.++++......
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhH
Confidence 00000111111111111111 111111110011111111111111 111110 00 0123456666666654211000
Q ss_pred ec---CCCcccccccCCceEecccccccc-----------------------------hh--ccc-cccccccccccEEe
Q 045843 738 ID---GNLTEGVTFQHLKKLHISHLPKLM-----------------------------HI--WKG-SIQSGSLIMLETLI 782 (913)
Q Consensus 738 ~~---~~l~~~~~~~~L~~L~l~~~~~l~-----------------------------~~--~~~-~~~~~~l~~L~~L~ 782 (913)
+. ..+. .+++|+.|++.++.-.. .. +.. +.....+++|+.|+
T Consensus 240 ~~~l~~~~~---~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 240 FNELLKLLR---YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp HHHHHGGGG---GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred HHHHHHHhh---hhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 00 0011 23444444443322100 00 000 00001245788888
Q ss_pred eccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccc--cCccCCCCccE
Q 045843 783 LKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICH--NMSLAWPLLET 860 (913)
Q Consensus 783 L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~--~~~~~~p~L~~ 860 (913)
+++| .+..+ |...++++++|+.|++++|...+.++.. ......+++|+.|++++| .++.++. ..+..+++|+.
T Consensus 317 l~~n-~l~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 317 VENS-KVFLV-PCSFSQHLKSLEFLDLSENLMVEEYLKN--SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp EESS-CCCCC-CHHHHHHCTTCCEEECCSSCCCHHHHHH--HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCE
T ss_pred eccC-ccccC-CHHHHhcCccccEEEccCCccccccccc--hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCE
Confidence 8884 46655 4445578999999999998866655310 013567888999998887 4555432 13567888888
Q ss_pred EeeecCcccccccCCCcCCCCcceeeeccccccc
Q 045843 861 ITIKACDELRNFPSTIENASKLRGIQCNQAWWSS 894 (913)
Q Consensus 861 L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~ 894 (913)
|++++| +++.+|..+..+++|++++...+-+..
T Consensus 392 L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 392 LDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp EECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSC
T ss_pred EECCCC-CCccCChhhcccccccEEECCCCCccc
Confidence 888886 777888877778888888887766543
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=2.3e-19 Score=216.36 Aligned_cols=107 Identities=22% Similarity=0.182 Sum_probs=55.8
Q ss_pred hhhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeec
Q 045843 506 EVANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFL 582 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L 582 (913)
.+++.|.+.+|.+..+++. ..+++|++|++++|.++.+|+..|.++++|++|++++|.+..+| ..++++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 4555555555555544332 34555555555555555555544555555555555555555444 34555555555555
Q ss_pred CCccCccccChhhhccccCCEEecCCCcCC
Q 045843 583 NNCCQLMRLPAEVGDLHNLEILDLSHTGIC 612 (913)
Q Consensus 583 ~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~ 612 (913)
++|......|..++++++|++|++++|.+.
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred CCCcccccCchhhcccccCCEEEccCCccc
Confidence 553222233344555555555555555543
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=4e-19 Score=194.08 Aligned_cols=121 Identities=22% Similarity=0.285 Sum_probs=97.5
Q ss_pred hhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceeecCCc
Q 045843 507 VANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNC 585 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c 585 (913)
.++.+.+.++.+..+|... .++|++|++++|.+..+++..|..+++|++|++++|.++.+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~- 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK- 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS-
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC-
Confidence 5677888888888877653 46888899988888888777778888999999998888866 67788889999999988
Q ss_pred cCccccChhhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 586 CQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 586 ~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
+.+..+|..+. ++|++|++++|.+..+|... .++ +|++|++..+
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~-------~L~~L~l~~n 157 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR-------NMNCIEMGGN 157 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS-------SCCEEECCSC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCc-------cCCEEECCCC
Confidence 57778887765 78899999988887777654 677 8888887766
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=7e-19 Score=192.00 Aligned_cols=287 Identities=18% Similarity=0.186 Sum_probs=173.9
Q ss_pred hhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceeecCCc
Q 045843 507 VANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNC 585 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c 585 (913)
+++.+.+.++.+..+|... .++++.|++++|.++.+++..|..+++|++|+|++|.++.+ |..++++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~- 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK- 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC-
Confidence 4566777777777666532 35777788877777777776667777888888887777765 66777777888888877
Q ss_pred cCccccChhhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeeccccCCC
Q 045843 586 CQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSS 663 (913)
Q Consensus 586 ~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~ 663 (913)
+.+..+|..+. ++|++|++++|.+..+|... .++ +|++|++..+....
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~l~~--------------------- 159 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLN-------QMIVVELGTNPLKS--------------------- 159 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT-------TCCEEECCSSCCCG---------------------
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCc-------cccEEECCCCcCCc---------------------
Confidence 56777776654 67778888777776665543 566 67777665541000
Q ss_pred CCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCc
Q 045843 664 PHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLT 743 (913)
Q Consensus 664 ~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 743 (913)
. ......+..+++|++|+++++... .++..
T Consensus 160 ---------------------------------------------~-~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~--- 189 (330)
T 1xku_A 160 ---------------------------------------------S-GIENGAFQGMKKLSYIRIADTNIT-TIPQG--- 189 (330)
T ss_dssp ---------------------------------------------G-GBCTTGGGGCTTCCEEECCSSCCC-SCCSS---
T ss_pred ---------------------------------------------c-CcChhhccCCCCcCEEECCCCccc-cCCcc---
Confidence 0 000011345567777777764322 22221
Q ss_pred ccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCc
Q 045843 744 EGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGS 823 (913)
Q Consensus 744 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~ 823 (913)
.+++|+.|+++++. +... .+.....+++|+.|+|++ +.+..+ ++..+..+++|+.|++++|. +..++.
T Consensus 190 ---~~~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~Ls~-n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~lp~--- 257 (330)
T 1xku_A 190 ---LPPSLTELHLDGNK-ITKV--DAASLKGLNNLAKLGLSF-NSISAV-DNGSLANTPHLRELHLNNNK-LVKVPG--- 257 (330)
T ss_dssp ---CCTTCSEEECTTSC-CCEE--CTGGGTTCTTCCEEECCS-SCCCEE-CTTTGGGSTTCCEEECCSSC-CSSCCT---
T ss_pred ---ccccCCEEECCCCc-CCcc--CHHHhcCCCCCCEEECCC-CcCcee-ChhhccCCCCCCEEECCCCc-CccCCh---
Confidence 24677777775532 1111 011123577788888877 445555 22456777888888887775 445543
Q ss_pred ccCCCCCCccceeecccccccccccccCcc------CCCCccEEeeecCcccc--cccCCCcCCCCcceeeeccc
Q 045843 824 AVDSRAFPKLKSFQLINLPKLSSICHNMSL------AWPLLETITIKACDELR--NFPSTIENASKLRGIQCNQA 890 (913)
Q Consensus 824 ~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~------~~p~L~~L~i~~C~~L~--~lP~~~~~l~~L~~l~~~~~ 890 (913)
....+++|+.|+++++ .++.++...+. ..+.|+.|++.++|... .-|..+..+.+++.++.+.+
T Consensus 258 --~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 258 --GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp --TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred --hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 5566778888888776 35555442221 24677888888765421 22344556777777776543
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=2.2e-19 Score=205.54 Aligned_cols=347 Identities=16% Similarity=0.135 Sum_probs=227.8
Q ss_pred eeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccc-cc-CccccCccCcceeecCCccC
Q 045843 510 RISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIK-LL-PSSISSLTNLKALFLNNCCQ 587 (913)
Q Consensus 510 ~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~-~l-p~~i~~L~~L~~L~L~~c~~ 587 (913)
.+...++.+..+|. -.++|++|++++|.++.+++..|.++++|++|++++|.+. .+ |..++++++|++|+|++|..
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 45566677788887 3489999999999999987777899999999999999986 55 56799999999999999543
Q ss_pred ccccChhhhccccCCEEecCCCcCCc-CCCc--c-ccccccccccccceeecccccccccCC---CCCccceeeeecccc
Q 045843 588 LMRLPAEVGDLHNLEILDLSHTGICC-LPSE--I-DLTTLCFYFPNVGLLQNFINASKSWNG---NSNFRSFSILVGYNQ 660 (913)
Q Consensus 588 l~~lP~~i~~L~~L~~L~L~~~~~~~-lp~~--i-~L~~L~~~~~~L~~L~l~~~~~~~~~~---~~~l~~l~~l~~~~~ 660 (913)
....|..++++++|++|++++|.+.. +|.. + .++ +|++|++..+....... ...++.|+.+.-..+
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-------SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT-------TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcc-------cCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 33458889999999999999999843 4433 4 777 99999998875433211 223333333321111
Q ss_pred CCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccc--------cCcccCcceEEecccC
Q 045843 661 RSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFG--------ANKFGDVEACIVEDCN 732 (913)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~--------~~~l~~L~~L~l~~~~ 732 (913)
. ........+..+....++.|.+. .+....++... +..+++|++|++++|.
T Consensus 165 ~--------------l~~~~~~~l~~l~~~~L~~L~l~-------~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 165 K--------------VKSICEEDLLNFQGKHFTLLRLS-------SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp C--------------BSCCCTTTSGGGTTCEEEEEECT-------TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred c--------------ccccChhhhhccccccccccccc-------cCcccccchhhccccccccccccceeeeEecCCCc
Confidence 0 00000011111111122222222 22222222211 2345789999999864
Q ss_pred CceEeecCCCcccccccCCceEecccccccchhcc---------ccccccccccccEEeeccCccccccCchHHHhhcCC
Q 045843 733 EMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWK---------GSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQ 803 (913)
Q Consensus 733 ~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~---------~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~ 803 (913)
.. ...+..+......++|+.|+++++......+. ........++|+.|++++| .+.... +..++.+++
T Consensus 224 l~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~ 300 (455)
T 3v47_A 224 FK-ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFALL-KSVFSHFTD 300 (455)
T ss_dssp CC-HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CCCEEC-TTTTTTCTT
T ss_pred cc-ccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc-cccccc-hhhcccCCC
Confidence 43 22222121111247888998876532221100 0011112478999999995 555553 367899999
Q ss_pred CcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccc-cCCCcCCCCc
Q 045843 804 IQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNF-PSTIENASKL 882 (913)
Q Consensus 804 L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~l-P~~~~~l~~L 882 (913)
|+.|++++|......+. ....+++|+.|+++++ .+..++...+..+++|+.|++++| .++.+ |..+..+++|
T Consensus 301 L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 301 LEQLTLAQNEINKIDDN-----AFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNL 373 (455)
T ss_dssp CCEEECTTSCCCEECTT-----TTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred CCEEECCCCcccccChh-----HhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccc
Confidence 99999999875443332 5678899999999998 456664436678999999999998 55666 6778899999
Q ss_pred ceeeecccccccCC
Q 045843 883 RGIQCNQAWWSSLV 896 (913)
Q Consensus 883 ~~l~~~~~~~~~l~ 896 (913)
++++...+-+..+.
T Consensus 374 ~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 374 KELALDTNQLKSVP 387 (455)
T ss_dssp CEEECCSSCCSCCC
T ss_pred cEEECCCCccccCC
Confidence 99999987766543
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=9.6e-19 Score=209.23 Aligned_cols=115 Identities=23% Similarity=0.262 Sum_probs=90.6
Q ss_pred hhhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeec
Q 045843 506 EVANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFL 582 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L 582 (913)
..+++|++++|.+..++.. ..+++|++|++++|.++.++++.|.++++|++|+|++|+++.+|. .|++|.+|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4788888888888888753 778888888888888888888878888888888888888888875 4788888888888
Q ss_pred CCccCccccCh-hhhccccCCEEecCCCcCCc--CCCcc-ccc
Q 045843 583 NNCCQLMRLPA-EVGDLHNLEILDLSHTGICC--LPSEI-DLT 621 (913)
Q Consensus 583 ~~c~~l~~lP~-~i~~L~~L~~L~L~~~~~~~--lp~~i-~L~ 621 (913)
++ +.+..+|. .+++|++|++|++++|.+.. +|..+ .++
T Consensus 132 s~-N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~ 173 (635)
T 4g8a_A 132 VE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 173 (635)
T ss_dssp TT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred CC-CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch
Confidence 88 46777765 47888888888888888743 34444 444
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=217.86 Aligned_cols=336 Identities=18% Similarity=0.139 Sum_probs=211.2
Q ss_pred eeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCc-cccc-CccccCccCcceeecCCccC
Q 045843 510 RISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTK-IKLL-PSSISSLTNLKALFLNNCCQ 587 (913)
Q Consensus 510 ~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~-i~~l-p~~i~~L~~L~~L~L~~c~~ 587 (913)
....+++++..+|. -.++|++|++++|.++.+++..|.++++|++|+|++|. +..+ |..|+++++|++|+|++| .
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~ 84 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-K 84 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-C
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-c
Confidence 34556677888887 56899999999999999887778999999999999995 4467 778999999999999995 5
Q ss_pred ccc-cChhhhccccCCEEecCCCcC-CcCCCc--c-ccccccccccccceeecccccccccC---CCCCccceeeeeccc
Q 045843 588 LMR-LPAEVGDLHNLEILDLSHTGI-CCLPSE--I-DLTTLCFYFPNVGLLQNFINASKSWN---GNSNFRSFSILVGYN 659 (913)
Q Consensus 588 l~~-lP~~i~~L~~L~~L~L~~~~~-~~lp~~--i-~L~~L~~~~~~L~~L~l~~~~~~~~~---~~~~l~~l~~l~~~~ 659 (913)
+.. .|..++++++|++|++++|.+ ..+|.. + .++ +|++|++..+...... .+.+++.|+.+.-..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~-------~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-------ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS-------SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC-------CCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 555 488999999999999999999 445654 4 888 9999999888543321 233344444432211
Q ss_pred cCCCCCccccccCCccccceeecCCCCCchhhHHHh--cccccccccccccccccCccccCccc------CcceEEeccc
Q 045843 660 QRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKIL--EQACAFELIGHRTAANLSDFGANKFG------DVEACIVEDC 731 (913)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L--~i~~~l~l~~~~~~~~l~~~~~~~l~------~L~~L~l~~~ 731 (913)
+. +....+..+..+ .-...+.+..+......+. .+..++ +|+.|++++|
T Consensus 158 N~----------------------i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 158 NQ----------------------IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp SC----------------------CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSC
T ss_pred Cc----------------------CCeeCHHHcccccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCC
Confidence 11 111111111111 0001111111111111110 011111 2555555543
Q ss_pred CCceE-----------------------------------eecCCCcccccccCCceEecccccccchhccccccccccc
Q 045843 732 NEMIS-----------------------------------IIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLI 776 (913)
Q Consensus 732 ~~~~~-----------------------------------~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~ 776 (913)
..... .....+. ...+++|+.|+++++.-.. . .+.....++
T Consensus 215 ~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~-~l~~~~L~~L~Ls~n~l~~-~--~~~~~~~l~ 290 (844)
T 3j0a_A 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA-GLARSSVRHLDLSHGFVFS-L--NSRVFETLK 290 (844)
T ss_dssp CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT-TTTTSCCCEEECTTCCCCE-E--CSCCSSSCC
T ss_pred cCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh-ccccCCccEEECCCCcccc-c--ChhhhhcCC
Confidence 11000 0000011 0023678888886543211 1 111224688
Q ss_pred cccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccCccCCC
Q 045843 777 MLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWP 856 (913)
Q Consensus 777 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p 856 (913)
+|+.|+|++ +.+..+ ++..+.++++|+.|++++|......+ .....+++|+.|+++++ .+..++...+..++
T Consensus 291 ~L~~L~L~~-n~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 291 DLKVLNLAY-NKINKI-ADEAFYGLDNLQVLNLSYNLLGELYS-----SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLE 362 (844)
T ss_dssp CCCEEEEES-CCCCEE-CTTTTTTCSSCCEEEEESCCCSCCCS-----CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCC
T ss_pred CCCEEECCC-CcCCCC-ChHHhcCCCCCCEEECCCCCCCccCH-----HHhcCCCCCCEEECCCC-CCCccChhhhcCCC
Confidence 999999998 456666 23677889999999999886433222 26678899999999987 56666654567789
Q ss_pred CccEEeeecCcccccccCCCcCCCCcceeeecccccccC
Q 045843 857 LLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSSL 895 (913)
Q Consensus 857 ~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~l 895 (913)
+|+.|++++| .++.+|. +++|+.+....+-+..+
T Consensus 363 ~L~~L~Ls~N-~l~~i~~----~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 363 KLQTLDLRDN-ALTTIHF----IPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp CCCEEEEETC-CSCCCSS----CCSCSEEEEESCCCCCC
T ss_pred CCCEEECCCC-CCCcccC----CCCcchhccCCCCcccc
Confidence 9999999996 6666654 56677777766555444
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=5.7e-19 Score=191.94 Aligned_cols=219 Identities=19% Similarity=0.253 Sum_probs=122.1
Q ss_pred CceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEEecC
Q 045843 528 CRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEILDLS 607 (913)
Q Consensus 528 ~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~L~ 607 (913)
.+++.|++++|.+..+|+.+ ..+++|++|+|++|.++.+|..++++.+|++|+|++ +.+..+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEES-CCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCC-CccccCcHHHhcCcCCCEEECC
Confidence 45666666666666666654 446667777776666666666666666677777766 3555666666666677777776
Q ss_pred CCcC-CcCCCcc-c---------cccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccc
Q 045843 608 HTGI-CCLPSEI-D---------LTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAE 676 (913)
Q Consensus 608 ~~~~-~~lp~~i-~---------L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 676 (913)
+|.+ ..+|..+ . ++ +|++|++..+.
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~-------~L~~L~L~~n~------------------------------------- 194 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLV-------NLQSLRLEWTG------------------------------------- 194 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEEST-------TCCEEEEEEEC-------------------------------------
T ss_pred CCCCccccChhHhhccchhhhccCC-------CCCEEECcCCC-------------------------------------
Confidence 6554 5566544 2 33 55555444330
Q ss_pred cceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEec
Q 045843 677 KYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHI 756 (913)
Q Consensus 677 ~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l 756 (913)
+..+ +.. +..+++|++|++++|... .+++ .+. .+++|+.|++
T Consensus 195 -------l~~l-------------------------p~~-l~~l~~L~~L~L~~N~l~-~l~~-~l~---~l~~L~~L~L 236 (328)
T 4fcg_A 195 -------IRSL-------------------------PAS-IANLQNLKSLKIRNSPLS-ALGP-AIH---HLPKLEELDL 236 (328)
T ss_dssp -------CCCC-------------------------CGG-GGGCTTCCEEEEESSCCC-CCCG-GGG---GCTTCCEEEC
T ss_pred -------cCcc-------------------------hHh-hcCCCCCCEEEccCCCCC-cCch-hhc---cCCCCCEEEC
Confidence 0011 111 234445555555553322 2222 133 4555666666
Q ss_pred ccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCcccee
Q 045843 757 SHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSF 836 (913)
Q Consensus 757 ~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L 836 (913)
+++...... +...+.+++|+.|+|++|+.+..+ | ..++++++|+.|+|++|+..+.+|. ....+++|+.+
T Consensus 237 s~n~~~~~~---p~~~~~l~~L~~L~L~~n~~~~~~-p-~~~~~l~~L~~L~L~~n~~~~~iP~-----~l~~L~~L~~l 306 (328)
T 4fcg_A 237 RGCTALRNY---PPIFGGRAPLKRLILKDCSNLLTL-P-LDIHRLTQLEKLDLRGCVNLSRLPS-----LIAQLPANCII 306 (328)
T ss_dssp TTCTTCCBC---CCCTTCCCCCCEEECTTCTTCCBC-C-TTGGGCTTCCEEECTTCTTCCCCCG-----GGGGSCTTCEE
T ss_pred cCCcchhhh---HHHhcCCCCCCEEECCCCCchhhc-c-hhhhcCCCCCEEeCCCCCchhhccH-----HHhhccCceEE
Confidence 543332211 111235666777777776655555 2 4566677777777777776666654 55666666666
Q ss_pred eccc
Q 045843 837 QLIN 840 (913)
Q Consensus 837 ~l~~ 840 (913)
.+..
T Consensus 307 ~l~~ 310 (328)
T 4fcg_A 307 LVPP 310 (328)
T ss_dssp ECCG
T ss_pred eCCH
Confidence 6653
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=2.3e-18 Score=195.85 Aligned_cols=298 Identities=17% Similarity=0.156 Sum_probs=210.2
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEE
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEIL 604 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L 604 (913)
..+++|++|++++|.++.+|. |..+++|++|++++|.++.+| ++++++|++|++++ +.+..+| ++++++|++|
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~-N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDS-NKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCS-SCCSCCC--CTTCTTCCEE
T ss_pred hHcCCCCEEEccCCCcccChh--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcC-CCCceee--cCCCCcCCEE
Confidence 467899999999999998873 699999999999999999987 99999999999999 5688886 8999999999
Q ss_pred ecCCCcCCcCCCcc-ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecC
Q 045843 605 DLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFAD 683 (913)
Q Consensus 605 ~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 683 (913)
++++|.+..+| + .++ +|++|++..+..... .+..++.|+.+.-. .|.....+ .
T Consensus 112 ~L~~N~l~~l~--~~~l~-------~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~-------------~n~~~~~~---~ 165 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNP-------LLTYLNCARNTLTEI-DVSHNTQLTELDCH-------------LNKKITKL---D 165 (457)
T ss_dssp ECCSSCCSCCC--CTTCT-------TCCEEECTTSCCSCC-CCTTCTTCCEEECT-------------TCSCCCCC---C
T ss_pred ECCCCcCCeec--CCCCC-------cCCEEECCCCcccee-ccccCCcCCEEECC-------------CCCccccc---c
Confidence 99999997776 5 777 899999988754332 23333344333221 11111111 2
Q ss_pred CCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEecccccccc
Q 045843 684 GEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLM 763 (913)
Q Consensus 684 l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~ 763 (913)
+..+ ..|+.|.+. .+.+..++ +..+++|+.|.+++|... .+ .+. .+++|+.|+++++. +.
T Consensus 166 ~~~l--~~L~~L~ls-------~n~l~~l~---l~~l~~L~~L~l~~N~l~-~~---~l~---~l~~L~~L~Ls~N~-l~ 225 (457)
T 3bz5_A 166 VTPQ--TQLTTLDCS-------FNKITELD---VSQNKLLNRLNCDTNNIT-KL---DLN---QNIQLTFLDCSSNK-LT 225 (457)
T ss_dssp CTTC--TTCCEEECC-------SSCCCCCC---CTTCTTCCEEECCSSCCS-CC---CCT---TCTTCSEEECCSSC-CS
T ss_pred cccC--CcCCEEECC-------CCccceec---cccCCCCCEEECcCCcCC-ee---ccc---cCCCCCEEECcCCc-cc
Confidence 3333 345555555 34444454 477889999999886433 32 244 68999999997643 22
Q ss_pred hhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEE----------ccCchhHhhhcCCcccCCCCCCcc
Q 045843 764 HIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQV----------EDCKEMEEIIEAGSAVDSRAFPKL 833 (913)
Q Consensus 764 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l----------~~~~~l~~i~~~~~~~~~~~f~~L 833 (913)
.. +...+++|+.|++++ +.++.+ + ++.+++|+.|++ ++|.....+ ....+++|
T Consensus 226 ~i-----p~~~l~~L~~L~l~~-N~l~~~-~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~-------~~~~l~~L 288 (457)
T 3bz5_A 226 EI-----DVTPLTQLTYFDCSV-NPLTEL-D---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF-------QAEGCRKI 288 (457)
T ss_dssp CC-----CCTTCTTCSEEECCS-SCCSCC-C---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE-------ECTTCTTC
T ss_pred cc-----CccccCCCCEEEeeC-CcCCCc-C---HHHCCCCCEEeccCCCCCEEECCCCccCCcc-------cccccccC
Confidence 11 134789999999999 466665 2 345666665554 444433333 34578999
Q ss_pred ceeeccccccccccccc-------CccCCCCccEEeeecCcccccccCCCcCCCCcceeeecccccccC
Q 045843 834 KSFQLINLPKLSSICHN-------MSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSSL 895 (913)
Q Consensus 834 ~~L~l~~~~~l~~i~~~-------~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~l 895 (913)
+.|++++|+.+..++.. ....+|+|+.|++++| +++.+| +..+++|+.+++..+.+..+
T Consensus 289 ~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp CCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCCCBC
T ss_pred CEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCCCCc
Confidence 99999999877766541 2345578888888875 677775 67899999999998877654
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=198.41 Aligned_cols=347 Identities=16% Similarity=0.141 Sum_probs=216.2
Q ss_pred hceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceeecCCcc
Q 045843 508 ANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNCC 586 (913)
Q Consensus 508 ~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c~ 586 (913)
.+.+++++|.+..+|.... ++|++|++++|.+..+++..|..+++|++|+|++|.++.+ |..++++++|++|+|++ +
T Consensus 2 ~~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N 79 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-N 79 (520)
T ss_dssp CCEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS-S
T ss_pred cceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC-C
Confidence 3678999999999997644 8999999999999999988889999999999999999977 77899999999999999 6
Q ss_pred CccccChhhhccccCCEEecCCCcCCc--CCCcc-ccccccccccccceeecccccccccCCCCCccce--eeeeccccC
Q 045843 587 QLMRLPAEVGDLHNLEILDLSHTGICC--LPSEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSF--SILVGYNQR 661 (913)
Q Consensus 587 ~l~~lP~~i~~L~~L~~L~L~~~~~~~--lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l--~~l~~~~~~ 661 (913)
.+..+|.. .+++|++|++++|.+.. +|..+ .++ +|++|++..+.... .....+..+ +.+.-..+.
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~-------~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS-------QLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT-------TCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECT
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCC-------cceEEEecCcccch-hhccccccceeeEEEeeccc
Confidence 78899987 89999999999999954 56677 888 99999998874332 112222222 332211110
Q ss_pred CCCCccccccCCccccceeecCCCCCc------------------h------hhHHHhcccc------------------
Q 045843 662 SSPHMEFDFSGCSAEKYLRFADGEGFP------------------D------AVVKILEQAC------------------ 699 (913)
Q Consensus 662 ~~~~~~~~~~~~~~~~~l~l~~l~~l~------------------~------~~L~~L~i~~------------------ 699 (913)
... .......+..+. + ..|+.+.+..
T Consensus 150 l~~------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 217 (520)
T 2z7x_B 150 TYG------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217 (520)
T ss_dssp TTT------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGG
T ss_pred ccc------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhc
Confidence 000 000011111110 0 1111111110
Q ss_pred ---------------------------------cccccccccccccCcccc-----CcccCcceEEecccCCceEee---
Q 045843 700 ---------------------------------AFELIGHRTAANLSDFGA-----NKFGDVEACIVEDCNEMISII--- 738 (913)
Q Consensus 700 ---------------------------------~l~l~~~~~~~~l~~~~~-----~~l~~L~~L~l~~~~~~~~~~--- 738 (913)
.+.+.++.....++.. + ..+++|+.++++++.. .++
T Consensus 218 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~~~l~~L~~l~l~~n~~--~~p~~~ 294 (520)
T 2z7x_B 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR-DFDYSGTSLKALSIHQVVSDVF--GFPQSY 294 (520)
T ss_dssp GCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC-CCCCCSCCCCEEEEEEEEECCC--CSCTHH
T ss_pred cccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccc-hhhcccccCceeEeccccccce--ecchhh
Confidence 0001000000011111 1 2233333333332211 000
Q ss_pred ---------------------cCCC-cccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCc-h
Q 045843 739 ---------------------DGNL-TEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFS-E 795 (913)
Q Consensus 739 ---------------------~~~l-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-~ 795 (913)
+..+ . .+++|++|+++++.-.... +.....+++|+.|+|++| .+..+.. +
T Consensus 295 ~~~~~~~~~L~~L~l~~n~l~~~~~~~---~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 367 (520)
T 2z7x_B 295 IYEIFSNMNIKNFTVSGTRMVHMLCPS---KISPFLHLDFSNNLLTDTV---FENCGHLTELETLILQMN-QLKELSKIA 367 (520)
T ss_dssp HHHHHHTCCCSEEEEESSCCCCCCCCS---SCCCCCEEECCSSCCCTTT---TTTCCCCSSCCEEECCSS-CCCBHHHHH
T ss_pred hhcccccCceeEEEcCCCccccccchh---hCCcccEEEeECCccChhh---hhhhccCCCCCEEEccCC-ccCccccch
Confidence 0000 1 4667777777654321100 111236788888888884 4554300 1
Q ss_pred HHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccCC
Q 045843 796 EIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPST 875 (913)
Q Consensus 796 ~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~ 875 (913)
..++.+++|+.|++++|.....++. .....+++|+.|++++|.-...++. .. .++|+.|++++| .++.+|..
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~----~~~~~l~~L~~L~Ls~N~l~~~~~~-~l--~~~L~~L~Ls~N-~l~~ip~~ 439 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKK----GDCSWTKSLLSLNMSSNILTDTIFR-CL--PPRIKVLDLHSN-KIKSIPKQ 439 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGG----CSCCCCTTCCEEECCSSCCCGGGGG-SC--CTTCCEEECCSS-CCCCCCGG
T ss_pred HHHhhCCCCCEEECCCCcCCccccc----chhccCccCCEEECcCCCCCcchhh-hh--cccCCEEECCCC-cccccchh
Confidence 4577888888888888775443553 1355678999999988854333333 11 279999999997 78899998
Q ss_pred CcCCCCcceeeecccccccCC
Q 045843 876 IENASKLRGIQCNQAWWSSLV 896 (913)
Q Consensus 876 ~~~l~~L~~l~~~~~~~~~l~ 896 (913)
+..+++|++++...+-+..+.
T Consensus 440 ~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 440 VVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp GGGCTTCCEEECCSSCCCCCC
T ss_pred hhcCCCCCEEECCCCcCCccC
Confidence 889999999999988776544
No 45
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=3.3e-18 Score=200.23 Aligned_cols=262 Identities=18% Similarity=0.128 Sum_probs=185.5
Q ss_pred hhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCcc
Q 045843 507 VANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCC 586 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~ 586 (913)
+++.+++.+|.+..+|.... ++|++|++++|.++.+|. .+++|++|+|++|.++.+|. .+.+|++|+|++ +
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS-N 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS-C
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC-C
Confidence 57889999999999887543 899999999999998886 57899999999999999997 789999999999 6
Q ss_pred CccccChhhhccccCCEEecCCCcCCcCCCccccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCc
Q 045843 587 QLMRLPAEVGDLHNLEILDLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHM 666 (913)
Q Consensus 587 ~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~ 666 (913)
.+..+|. .+.+|++|++++|.+..+|..+ + +|++|++..+....
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~l--~-------~L~~L~Ls~N~l~~------------------------ 155 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVLP--P-------GLQELSVSDNQLAS------------------------ 155 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSCCSCCCCCC--T-------TCCEEECCSSCCSC------------------------
T ss_pred cCCCCCC---CCCCcCEEECCCCCCCcCCCCC--C-------CCCEEECcCCcCCC------------------------
Confidence 7888887 6789999999999998888743 4 88888887762111
Q ss_pred cccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccc
Q 045843 667 EFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGV 746 (913)
Q Consensus 667 ~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 746 (913)
+...+ ..|+.|.+. .+.+..++ ..+++|+.|++++|... .++.
T Consensus 156 -----------------l~~~~-~~L~~L~L~-------~N~l~~l~----~~~~~L~~L~Ls~N~l~-~l~~------- 198 (622)
T 3g06_A 156 -----------------LPALP-SELCKLWAY-------NNQLTSLP----MLPSGLQELSVSDNQLA-SLPT------- 198 (622)
T ss_dssp -----------------CCCCC-TTCCEEECC-------SSCCSCCC----CCCTTCCEEECCSSCCS-CCCC-------
T ss_pred -----------------cCCcc-CCCCEEECC-------CCCCCCCc----ccCCCCcEEECCCCCCC-CCCC-------
Confidence 00011 233333333 33333444 23577888888875332 2221
Q ss_pred cccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccC
Q 045843 747 TFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVD 826 (913)
Q Consensus 747 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 826 (913)
.+++|+.|+++++. +.... ..+++|+.|+|++ +.++.+ + ..+++|+.|++++|. ++.++ .
T Consensus 199 ~~~~L~~L~L~~N~-l~~l~------~~~~~L~~L~Ls~-N~L~~l---p--~~l~~L~~L~Ls~N~-L~~lp------~ 258 (622)
T 3g06_A 199 LPSELYKLWAYNNR-LTSLP------ALPSGLKELIVSG-NRLTSL---P--VLPSELKELMVSGNR-LTSLP------M 258 (622)
T ss_dssp CCTTCCEEECCSSC-CSSCC------CCCTTCCEEECCS-SCCSCC---C--CCCTTCCEEECCSSC-CSCCC------C
T ss_pred ccchhhEEECcCCc-ccccC------CCCCCCCEEEccC-CccCcC---C--CCCCcCcEEECCCCC-CCcCC------c
Confidence 35788888886532 22111 1357888888888 466666 2 567888888888874 44553 2
Q ss_pred CCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccC
Q 045843 827 SRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPS 874 (913)
Q Consensus 827 ~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~ 874 (913)
.+++|+.|++++| .++.+|. .+..+++|+.|++++|+--...|.
T Consensus 259 --~~~~L~~L~Ls~N-~L~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 259 --LPSGLLSLSVYRN-QLTRLPE-SLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp --CCTTCCEEECCSS-CCCSCCG-GGGGSCTTCEEECCSCCCCHHHHH
T ss_pred --ccccCcEEeCCCC-CCCcCCH-HHhhccccCEEEecCCCCCCcCHH
Confidence 5678888888887 5667776 567788888888888764443333
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=2.2e-17 Score=180.14 Aligned_cols=269 Identities=17% Similarity=0.188 Sum_probs=198.7
Q ss_pred CceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCccCcccc-ChhhhccccCCEEe
Q 045843 528 CRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCCQLMRL-PAEVGDLHNLEILD 605 (913)
Q Consensus 528 ~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~l-P~~i~~L~~L~~L~ 605 (913)
.+++.++++++.++.+|..+ .+.|++|+|++|.++.+|. .++++++|++|+|++| .+..+ |..++++++|++|+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEE
Confidence 37899999999999888754 4789999999999998875 7999999999999994 56655 88899999999999
Q ss_pred cCCCcCCcCCCccccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecCCC
Q 045843 606 LSHTGICCLPSEIDLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFADGE 685 (913)
Q Consensus 606 L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~ 685 (913)
+++|.+..+|..+. + +|++|++..+. +.
T Consensus 107 Ls~n~l~~l~~~~~-~-------~L~~L~l~~n~--------------------------------------------l~ 134 (330)
T 1xku_A 107 LSKNQLKELPEKMP-K-------TLQELRVHENE--------------------------------------------IT 134 (330)
T ss_dssp CCSSCCSBCCSSCC-T-------TCCEEECCSSC--------------------------------------------CC
T ss_pred CCCCcCCccChhhc-c-------cccEEECCCCc--------------------------------------------cc
Confidence 99999988876542 3 67777766541 11
Q ss_pred CCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCce-EeecCCCcccccccCCceEecccccccch
Q 045843 686 GFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMI-SIIDGNLTEGVTFQHLKKLHISHLPKLMH 764 (913)
Q Consensus 686 ~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~~ 764 (913)
.++ ...+.++++|+.|+++++.... ......+. .+++|+.|++++.. +..
T Consensus 135 ~~~-------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~l~~L~~L~l~~n~-l~~ 185 (330)
T 1xku_A 135 KVR-------------------------KSVFNGLNQMIVVELGTNPLKSSGIENGAFQ---GMKKLSYIRIADTN-ITT 185 (330)
T ss_dssp BBC-------------------------HHHHTTCTTCCEEECCSSCCCGGGBCTTGGG---GCTTCCEEECCSSC-CCS
T ss_pred ccC-------------------------HhHhcCCccccEEECCCCcCCccCcChhhcc---CCCCcCEEECCCCc-ccc
Confidence 111 1113567789999998864321 12222244 68999999997643 221
Q ss_pred hccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeeccccccc
Q 045843 765 IWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKL 844 (913)
Q Consensus 765 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l 844 (913)
. +...+++|+.|++++| .+..+ ++..+.++++|+.|++++|.. +.++. .....+++|+.|+++++ .+
T Consensus 186 l-----~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~----~~~~~l~~L~~L~L~~N-~l 252 (330)
T 1xku_A 186 I-----PQGLPPSLTELHLDGN-KITKV-DAASLKGLNNLAKLGLSFNSI-SAVDN----GSLANTPHLRELHLNNN-KL 252 (330)
T ss_dssp C-----CSSCCTTCSEEECTTS-CCCEE-CTGGGTTCTTCCEEECCSSCC-CEECT----TTGGGSTTCCEEECCSS-CC
T ss_pred C-----CccccccCCEEECCCC-cCCcc-CHHHhcCCCCCCEEECCCCcC-ceeCh----hhccCCCCCCEEECCCC-cC
Confidence 1 1124589999999995 56666 346789999999999999874 33321 14567899999999998 57
Q ss_pred ccccccCccCCCCccEEeeecCcccccccCCCc-------CCCCcceeeecccccccCC
Q 045843 845 SSICHNMSLAWPLLETITIKACDELRNFPSTIE-------NASKLRGIQCNQAWWSSLV 896 (913)
Q Consensus 845 ~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~-------~l~~L~~l~~~~~~~~~l~ 896 (913)
..++. ....+++|+.|++++| .++.+|.... ...+|..++...+.|....
T Consensus 253 ~~lp~-~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 253 VKVPG-GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp SSCCT-TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred ccCCh-hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 78777 6778999999999996 7888876432 2467888888887765443
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=2.1e-18 Score=186.38 Aligned_cols=103 Identities=24% Similarity=0.340 Sum_probs=82.4
Q ss_pred CceeEEeeccCcccc---CchHHHhcCCcccEEeccC-Cccc-ccCccccCccCcceeecCCccCccccChhhhccccCC
Q 045843 528 CRILTLLLQESSLAE---LPASFFGYMCSLQLLDLHD-TKIK-LLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLE 602 (913)
Q Consensus 528 ~~Lr~L~l~~~~l~~---l~~~~f~~l~~Lr~LdLs~-~~i~-~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~ 602 (913)
.+++.|++++|.+.. +|.. |..+++|++|++++ |.+. .+|..++++++|++|+|++|.....+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578889998887774 5554 58899999999985 7777 7788889999999999988443347888889999999
Q ss_pred EEecCCCcC-CcCCCcc-ccccccccccccceeecccc
Q 045843 603 ILDLSHTGI-CCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 603 ~L~L~~~~~-~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+|++++|.+ ..+|..+ .++ +|++|++..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~-------~L~~L~L~~N 159 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLP-------NLVGITFDGN 159 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCT-------TCCEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCC-------CCCeEECcCC
Confidence 999999888 4777777 777 8888887765
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=9.6e-18 Score=197.07 Aligned_cols=106 Identities=20% Similarity=0.154 Sum_probs=88.9
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeecCCccCcccc-ChhhhccccCC
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFLNNCCQLMRL-PAEVGDLHNLE 602 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L~~c~~l~~l-P~~i~~L~~L~ 602 (913)
..|...+++++++|.++.+|..+ .++|++|+|++|.++.+| ..++++++|++|+|++| .+..+ |..++++++|+
T Consensus 28 ~~~~~~~~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 28 FSNELESMVDYSNRNLTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp -----CCEEECTTSCCCSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCC
T ss_pred cccCCCcEEEcCCCCCccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCC
Confidence 34556689999999999999865 389999999999999886 58999999999999994 66666 67799999999
Q ss_pred EEecCCCcCCcCCCccccccccccccccceeecccccccc
Q 045843 603 ILDLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFINASKS 642 (913)
Q Consensus 603 ~L~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~~~~ 642 (913)
+|++++|.+..+|.. .++ +|++|++..+....
T Consensus 104 ~L~Ls~N~l~~lp~~-~l~-------~L~~L~Ls~N~l~~ 135 (562)
T 3a79_B 104 YLDVSHNRLQNISCC-PMA-------SLRHLDLSFNDFDV 135 (562)
T ss_dssp EEECTTSCCCEECSC-CCT-------TCSEEECCSSCCSB
T ss_pred EEECCCCcCCccCcc-ccc-------cCCEEECCCCCccc
Confidence 999999999989887 777 99999998886543
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=183.64 Aligned_cols=119 Identities=23% Similarity=0.177 Sum_probs=87.1
Q ss_pred eeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceeecCCccCcc
Q 045843 511 ISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNCCQLM 589 (913)
Q Consensus 511 Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c~~l~ 589 (913)
....++.+..+|... .++|++|++++|.++.++...|.++++|++|++++|.++.+ |..++++.+|++|++++ +.+.
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLS 113 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCS
T ss_pred eeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCC
Confidence 555666777777642 25788888888888877776678888888888888888766 45678888888888888 5677
Q ss_pred ccChh-hhccccCCEEecCCCcCCcCCC--cc-ccccccccccccceeecccc
Q 045843 590 RLPAE-VGDLHNLEILDLSHTGICCLPS--EI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 590 ~lP~~-i~~L~~L~~L~L~~~~~~~lp~--~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
.+|.. ++++++|++|++++|.+..+|. .+ .++ +|++|++..+
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~-------~L~~L~l~~n 159 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT-------KLQILRVGNM 159 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT-------TCCEEEEEES
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC-------CCcEEECCCC
Confidence 77766 7788888888888887777766 23 566 6777766554
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=2.9e-17 Score=180.98 Aligned_cols=277 Identities=18% Similarity=0.204 Sum_probs=180.2
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCccCcccc-ChhhhccccCC
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCCQLMRL-PAEVGDLHNLE 602 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~l-P~~i~~L~~L~ 602 (913)
..|+.....+++++.++.+|..+ .++|++|++++|.++.+|. .+.++++|++|++++| .+..+ |..++++++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCC
Confidence 44555566888888999999865 3689999999999998876 7999999999999994 66666 55699999999
Q ss_pred EEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCcccccee
Q 045843 603 ILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLR 680 (913)
Q Consensus 603 ~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 680 (913)
+|++++|.+..+|... .++ +|++|++..+..
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l---------------------------------------- 136 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLS-------SLTFLNLLGNPY---------------------------------------- 136 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCT-------TCSEEECTTCCC----------------------------------------
T ss_pred EEECCCCcCCcCCHhHhCCCc-------cCCEEECCCCCC----------------------------------------
Confidence 9999999998888763 777 899998876511
Q ss_pred ecCCCCCchhhHHHhcccccccccccccccccCc-cccCcccCcceEEecccCCceEeecCCCcccccccCCceEecccc
Q 045843 681 FADGEGFPDAVVKILEQACAFELIGHRTAANLSD-FGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHL 759 (913)
Q Consensus 681 l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 759 (913)
..+| . ..+..+++|++|++++|+.+..+....+. .+++|+.|+++++
T Consensus 137 ----~~l~-------------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~l~~L~~L~l~~n 184 (353)
T 2z80_A 137 ----KTLG-------------------------ETSLFSHLTKLQILRVGNMDTFTKIQRKDFA---GLTFLEELEIDAS 184 (353)
T ss_dssp ----SSSC-------------------------SSCSCTTCTTCCEEEEEESSSCCEECTTTTT---TCCEEEEEEEEET
T ss_pred ----cccC-------------------------chhhhccCCCCcEEECCCCccccccCHHHcc---CCCCCCEEECCCC
Confidence 0111 0 01245667777777776545344444444 5677777777543
Q ss_pred cccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecc
Q 045843 760 PKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLI 839 (913)
Q Consensus 760 ~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~ 839 (913)
.-.. . .+.....+++|+.|+++++ .+..+ +...+..+++|+.|++++|.... ++..... .....+.++.+.+.
T Consensus 185 ~l~~-~--~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~-~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 185 DLQS-Y--EPKSLKSIQNVSHLILHMK-QHILL-LEIFVDVTSSVECLELRDTDLDT-FHFSELS-TGETNSLIKKFTFR 257 (353)
T ss_dssp TCCE-E--CTTTTTTCSEEEEEEEECS-CSTTH-HHHHHHHTTTEEEEEEESCBCTT-CCCC-------CCCCCCEEEEE
T ss_pred CcCc-c--CHHHHhccccCCeecCCCC-ccccc-hhhhhhhcccccEEECCCCcccc-ccccccc-cccccchhhccccc
Confidence 2111 0 0111235777888888774 35544 33445667888888887775322 2110000 11234456666665
Q ss_pred cccc----cccccccCccCCCCccEEeeecCcccccccCCC-cCCCCcceeeecccccc
Q 045843 840 NLPK----LSSICHNMSLAWPLLETITIKACDELRNFPSTI-ENASKLRGIQCNQAWWS 893 (913)
Q Consensus 840 ~~~~----l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~-~~l~~L~~l~~~~~~~~ 893 (913)
++.- +..++. ....+++|+.|++++| .++.+|..+ ..+++|++++...+-|.
T Consensus 258 ~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 258 NVKITDESLFQVMK-LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp SCBCCHHHHHHHHH-HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccccCcchhhhHH-HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 5421 122333 3456778888888886 677887764 57788888888776654
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=7e-17 Score=183.36 Aligned_cols=303 Identities=17% Similarity=0.161 Sum_probs=156.7
Q ss_pred hhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCc
Q 045843 506 EVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNC 585 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c 585 (913)
.+++.|++.+|.+..+|.. .++|+.|++++|.++.++.. .++|++|++++|.++.+| .++++.+|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~- 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN- 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC-
Confidence 4667777777776666643 36677777777766665431 256777777777777776 477777777777777
Q ss_pred cCccccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCC
Q 045843 586 CQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSP 664 (913)
Q Consensus 586 ~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 664 (913)
+.+..+|..+ .+|++|++++|.+..+| .+ .++ +|++|++..+........ ...++.+
T Consensus 163 N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~-------~L~~L~l~~N~l~~l~~~--~~~L~~L--------- 220 (454)
T 1jl5_A 163 NSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLP-------FLTAIYADNNSLKKLPDL--PLSLESI--------- 220 (454)
T ss_dssp SCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCT-------TCCEEECCSSCCSSCCCC--CTTCCEE---------
T ss_pred CcCcccCCCc---ccccEEECcCCcCCcCc-cccCCC-------CCCEEECCCCcCCcCCCC--cCcccEE---------
Confidence 4566666533 46777777777776666 34 666 777777766532221100 0011111
Q ss_pred CccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcc
Q 045843 665 HMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTE 744 (913)
Q Consensus 665 ~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 744 (913)
++..|. .. .+..+..+ ..|+.|.+. .+.+..++.. +++|+.|++++|... .++ .
T Consensus 221 ----~l~~n~-l~--~lp~~~~l--~~L~~L~l~-------~N~l~~l~~~----~~~L~~L~l~~N~l~-~l~-~---- 274 (454)
T 1jl5_A 221 ----VAGNNI-LE--ELPELQNL--PFLTTIYAD-------NNLLKTLPDL----PPSLEALNVRDNYLT-DLP-E---- 274 (454)
T ss_dssp ----ECCSSC-CS--SCCCCTTC--TTCCEEECC-------SSCCSSCCSC----CTTCCEEECCSSCCS-CCC-C----
T ss_pred ----ECcCCc-CC--cccccCCC--CCCCEEECC-------CCcCCccccc----ccccCEEECCCCccc-ccC-c----
Confidence 111110 00 11123333 334444443 2333333322 356777777664322 221 1
Q ss_pred cccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhc-CCCcEEEEccCchhHhhhcCCc
Q 045843 745 GVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQL-NQIQYLQVEDCKEMEEIIEAGS 823 (913)
Q Consensus 745 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l-~~L~~L~l~~~~~l~~i~~~~~ 823 (913)
.+++|+.|+++++. +.... ...++|+.|++++| .+..+. .+ ++|+.|++++|. +..++.
T Consensus 275 --~~~~L~~L~ls~N~-l~~l~------~~~~~L~~L~l~~N-~l~~i~------~~~~~L~~L~Ls~N~-l~~lp~--- 334 (454)
T 1jl5_A 275 --LPQSLTFLDVSENI-FSGLS------ELPPNLYYLNASSN-EIRSLC------DLPPSLEELNVSNNK-LIELPA--- 334 (454)
T ss_dssp --CCTTCCEEECCSSC-CSEES------CCCTTCCEEECCSS-CCSEEC------CCCTTCCEEECCSSC-CSCCCC---
T ss_pred --ccCcCCEEECcCCc-cCccc------CcCCcCCEEECcCC-cCCccc------CCcCcCCEEECCCCc-cccccc---
Confidence 24677777775532 11100 01256777777763 444431 23 477777777765 333432
Q ss_pred ccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccc--cccCCCcCC-------------CCcceeeec
Q 045843 824 AVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELR--NFPSTIENA-------------SKLRGIQCN 888 (913)
Q Consensus 824 ~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~--~lP~~~~~l-------------~~L~~l~~~ 888 (913)
.+++|+.|+++++ .++.++. .+++|+.|++++|+--. .+|.++..+ ++|+.++..
T Consensus 335 -----~~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 335 -----LPPRLERLIASFN-HLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp -----CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------
T ss_pred -----cCCcCCEEECCCC-ccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECC
Confidence 2577888888776 4555544 46788888888764433 466666655 677777777
Q ss_pred cccccc
Q 045843 889 QAWWSS 894 (913)
Q Consensus 889 ~~~~~~ 894 (913)
.+.+.+
T Consensus 405 ~N~l~~ 410 (454)
T 1jl5_A 405 TNPLRE 410 (454)
T ss_dssp ------
T ss_pred CCcCCc
Confidence 766554
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.4e-17 Score=179.54 Aligned_cols=121 Identities=22% Similarity=0.243 Sum_probs=94.4
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc---CccccCccCcceeecCCc
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL---PSSISSLTNLKALFLNNC 585 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l---p~~i~~L~~L~~L~L~~c 585 (913)
+.+...++.+..+|... .++|+.|++++|.++.+|..+|.++++|++|+|++|.++.+ |..+..+.+|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~- 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF- 87 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS-
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC-
Confidence 35666677777777642 36889999999988888888888899999999999888755 56677888999999988
Q ss_pred cCccccChhhhccccCCEEecCCCcCCcCCC--cc-ccccccccccccceeecccc
Q 045843 586 CQLMRLPAEVGDLHNLEILDLSHTGICCLPS--EI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 586 ~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~--~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+.+..+|..+..+++|++|++++|.+..+|. .+ .++ +|++|++..+
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------~L~~L~l~~n 136 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-------NLIYLDISHT 136 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT-------TCCEEECTTS
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhcc-------CCCEEECCCC
Confidence 5777888888889999999999888866654 23 666 7777776654
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=3.8e-17 Score=186.36 Aligned_cols=241 Identities=18% Similarity=0.157 Sum_probs=153.8
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeecCCccC
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFLNNCCQ 587 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L~~c~~ 587 (913)
+.+...+..+..+|... .++++.|++++|.++.+++..|.++++|++|+|++|.++.++ ..+.++.+|++|+|++ +.
T Consensus 57 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NW 134 (452)
T ss_dssp CEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SC
T ss_pred cEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC-Cc
Confidence 45556666666776542 267888888888888777777788888888888888887664 5677888888888888 45
Q ss_pred ccccChh-hhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCC
Q 045843 588 LMRLPAE-VGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSP 664 (913)
Q Consensus 588 l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 664 (913)
+..+|.. ++++++|++|++++|.+..+|... .++ +|+.|++..+.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~l~~~~------------------------- 182 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-------SLMRLDLGELK------------------------- 182 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT-------TCCEEECCCCT-------------------------
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC-------cccEEeCCCCC-------------------------
Confidence 6666654 777888888888888876666543 566 67766655430
Q ss_pred CccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcc
Q 045843 665 HMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTE 744 (913)
Q Consensus 665 ~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 744 (913)
....++...+..+++|+.|++++|... .+.. +.
T Consensus 183 -------------------------------------------~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~- 215 (452)
T 3zyi_A 183 -------------------------------------------KLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LT- 215 (452)
T ss_dssp -------------------------------------------TCCEECTTTTTTCTTCCEEECTTSCCS-SCCC--CT-
T ss_pred -------------------------------------------CccccChhhccCCCCCCEEECCCCccc-cccc--cc-
Confidence 001111111356678888888875432 3322 33
Q ss_pred cccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcc
Q 045843 745 GVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSA 824 (913)
Q Consensus 745 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~ 824 (913)
.+++|+.|+++++.-.. .. +.....+++|+.|+|++ +.+..+ ++..+.++++|+.|+|++|. ++.++.
T Consensus 216 --~l~~L~~L~Ls~N~l~~-~~--~~~~~~l~~L~~L~L~~-n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~---- 283 (452)
T 3zyi_A 216 --PLVGLEELEMSGNHFPE-IR--PGSFHGLSSLKKLWVMN-SQVSLI-ERNAFDGLASLVELNLAHNN-LSSLPH---- 283 (452)
T ss_dssp --TCTTCCEEECTTSCCSE-EC--GGGGTTCTTCCEEECTT-SCCCEE-CTTTTTTCTTCCEEECCSSC-CSCCCT----
T ss_pred --ccccccEEECcCCcCcc-cC--cccccCccCCCEEEeCC-CcCceE-CHHHhcCCCCCCEEECCCCc-CCccCh----
Confidence 57778888876532111 10 11123577788888877 445555 23566777788888887764 344432
Q ss_pred cCCCCCCccceeeccccc
Q 045843 825 VDSRAFPKLKSFQLINLP 842 (913)
Q Consensus 825 ~~~~~f~~L~~L~l~~~~ 842 (913)
.....+++|+.|+|+++|
T Consensus 284 ~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TSSTTCTTCCEEECCSSC
T ss_pred HHhccccCCCEEEccCCC
Confidence 134556777777777765
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=6.7e-18 Score=182.36 Aligned_cols=249 Identities=14% Similarity=0.117 Sum_probs=171.7
Q ss_pred hhhceeeeccccccC---CCCC-CCCCceeEEeecc-CccccCchHHHhcCCcccEEeccCCccc-ccCccccCccCcce
Q 045843 506 EVANRISLIRMCLST---LPKR-PKCCRILTLLLQE-SSLAELPASFFGYMCSLQLLDLHDTKIK-LLPSSISSLTNLKA 579 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~---l~~~-~~~~~Lr~L~l~~-~~l~~l~~~~f~~l~~Lr~LdLs~~~i~-~lp~~i~~L~~L~~ 579 (913)
..++.|++.++.+.. +|.. ..+++|++|++++ |.+....+..|..+++|++|+|++|.++ .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 468899999998874 5544 7899999999995 7777544444699999999999999998 88999999999999
Q ss_pred eecCCccCccccChhhhccccCCEEecCCCcC-CcCCCcc-ccccccccccccceeecccccccccCCCCCccceeeeec
Q 045843 580 LFLNNCCQLMRLPAEVGDLHNLEILDLSHTGI-CCLPSEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVG 657 (913)
Q Consensus 580 L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~-~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~ 657 (913)
|++++|.....+|..++++++|++|++++|.+ ..+|..+ .+. ++|++|++..+..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~------~~L~~L~L~~N~l----------------- 186 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS------KLFTSMTISRNRL----------------- 186 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC------TTCCEEECCSSEE-----------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh------hcCcEEECcCCee-----------------
Confidence 99999544448999999999999999999999 4788766 432 1577777665510
Q ss_pred cccCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEe
Q 045843 658 YNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISI 737 (913)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 737 (913)
.. .++.. +..++ |+.|+++++... ..
T Consensus 187 ------------------------~~---------------------------~~~~~-~~~l~-L~~L~Ls~N~l~-~~ 212 (313)
T 1ogq_A 187 ------------------------TG---------------------------KIPPT-FANLN-LAFVDLSRNMLE-GD 212 (313)
T ss_dssp ------------------------EE---------------------------ECCGG-GGGCC-CSEEECCSSEEE-EC
T ss_pred ------------------------ec---------------------------cCChH-HhCCc-ccEEECcCCccc-Cc
Confidence 00 00000 12333 777777774322 33
Q ss_pred ecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHh
Q 045843 738 IDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEE 817 (913)
Q Consensus 738 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~ 817 (913)
++..+. .+++|+.|++++..-.... .....+++|++|+|++| .+...+| ..+..+++|+.|++++|.....
T Consensus 213 ~~~~~~---~l~~L~~L~L~~N~l~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 213 ASVLFG---SDKNTQKIHLAKNSLAFDL----GKVGLSKNLNGLDLRNN-RIYGTLP-QGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CGGGCC---TTSCCSEEECCSSEECCBG----GGCCCCTTCCEEECCSS-CCEECCC-GGGGGCTTCCEEECCSSEEEEE
T ss_pred CCHHHh---cCCCCCEEECCCCceeeec----CcccccCCCCEEECcCC-cccCcCC-hHHhcCcCCCEEECcCCccccc
Confidence 333344 5677777777553321100 01235678888888874 4443323 5677788888888888775555
Q ss_pred hhcCCcccCCCCCCccceeeccccccccc
Q 045843 818 IIEAGSAVDSRAFPKLKSFQLINLPKLSS 846 (913)
Q Consensus 818 i~~~~~~~~~~~f~~L~~L~l~~~~~l~~ 846 (913)
+| ....+++|+.|++.+++.+..
T Consensus 284 ip------~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 284 IP------QGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CC------CSTTGGGSCGGGTCSSSEEES
T ss_pred CC------CCccccccChHHhcCCCCccC
Confidence 55 336677777777777765544
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=5.9e-17 Score=184.10 Aligned_cols=242 Identities=18% Similarity=0.213 Sum_probs=158.9
Q ss_pred hceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeecCCcc
Q 045843 508 ANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFLNNCC 586 (913)
Q Consensus 508 ~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L~~c~ 586 (913)
.+.+...+..+..+|... .++++.|++++|.+..++...|.++++|++|+|++|.++.++ ..+.++.+|++|+|++ +
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-N 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS-S
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC-C
Confidence 345666666677777543 267788888888887777777788888888888888887665 5677888888888888 4
Q ss_pred CccccCh-hhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeeccccCCC
Q 045843 587 QLMRLPA-EVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSS 663 (913)
Q Consensus 587 ~l~~lP~-~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~ 663 (913)
.+..+|. .+..+++|++|++++|.+..+|... .++ +|++|++..+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-------~L~~L~l~~~~------------------------ 171 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP-------SLRRLDLGELK------------------------ 171 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT-------TCCEEECCCCT------------------------
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc-------ccCEeCCCCCC------------------------
Confidence 6666665 4777888888888888776666543 566 67666655430
Q ss_pred CCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCc
Q 045843 664 PHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLT 743 (913)
Q Consensus 664 ~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 743 (913)
....++...+.++++|++|++++|... .++. +.
T Consensus 172 --------------------------------------------~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~--~~ 204 (440)
T 3zyj_A 172 --------------------------------------------RLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--LT 204 (440)
T ss_dssp --------------------------------------------TCCEECTTTTTTCSSCCEEECTTSCCS-SCCC--CT
T ss_pred --------------------------------------------CcceeCcchhhcccccCeecCCCCcCc-cccc--cC
Confidence 111111112366778899999886432 3332 33
Q ss_pred ccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCc
Q 045843 744 EGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGS 823 (913)
Q Consensus 744 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~ 823 (913)
.+++|+.|+++++. +.... +.....+++|+.|+|++ +.+..+ ++..+.++++|+.|+|++|. ++.++.
T Consensus 205 ---~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~-n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~--- 272 (440)
T 3zyj_A 205 ---PLIKLDELDLSGNH-LSAIR--PGSFQGLMHLQKLWMIQ-SQIQVI-ERNAFDNLQSLVEINLAHNN-LTLLPH--- 272 (440)
T ss_dssp ---TCSSCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECTT-CCCCEE-CTTSSTTCTTCCEEECTTSC-CCCCCT---
T ss_pred ---CCcccCEEECCCCc-cCccC--hhhhccCccCCEEECCC-CceeEE-ChhhhcCCCCCCEEECCCCC-CCccCh---
Confidence 67788888886642 22111 11223678888888888 456665 33567778888888888775 444432
Q ss_pred ccCCCCCCccceeeccccc
Q 045843 824 AVDSRAFPKLKSFQLINLP 842 (913)
Q Consensus 824 ~~~~~~f~~L~~L~l~~~~ 842 (913)
.....+++|+.|+|+++|
T Consensus 273 -~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 273 -DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -TTTSSCTTCCEEECCSSC
T ss_pred -hHhccccCCCEEEcCCCC
Confidence 134567888888888766
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=1.2e-16 Score=191.03 Aligned_cols=118 Identities=22% Similarity=0.229 Sum_probs=96.6
Q ss_pred eeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCccCccc
Q 045843 512 SLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCCQLMR 590 (913)
Q Consensus 512 sl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~ 590 (913)
+-++.++..+|... .++++.|++++|.++.+++..|.++++|++|||++|.|+.+|+ .|.+|++|++|+|++ +.++.
T Consensus 37 ~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~-N~l~~ 114 (635)
T 4g8a_A 37 QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQS 114 (635)
T ss_dssp ECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCE
T ss_pred ECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC-CcCCC
Confidence 33444566777542 2579999999999999999889999999999999999998865 689999999999999 57888
Q ss_pred cCh-hhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 591 LPA-EVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 591 lP~-~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
+|. .|++|++|++|++++|.+..+|... .++ +|++|++..+
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~-------~L~~L~Ls~N 158 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-------TLKELNVAHN 158 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT-------TCCEEECCSS
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc-------ccCeeccccC
Confidence 886 4899999999999999998888753 566 4555544443
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=9.9e-17 Score=182.11 Aligned_cols=291 Identities=16% Similarity=0.160 Sum_probs=178.9
Q ss_pred hhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCc
Q 045843 506 EVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNC 585 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c 585 (913)
.+++.|++.+|.+..++... ++|++|++++|.++.+|. |..+++|++|++++|.++.+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~- 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGN- 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCS-
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcC-
Confidence 57899999999988877543 789999999999988883 799999999999999999988754 4899999999
Q ss_pred cCccccChhhhccccCCEEecCCCcCCcCCCccccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCC
Q 045843 586 CQLMRLPAEVGDLHNLEILDLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPH 665 (913)
Q Consensus 586 ~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~ 665 (913)
+.+..+| .++++++|++|++++|.+..+|... . +|++|++..+....+.....+..|+.+.-..+
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~--~-------~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N----- 247 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP--L-------SLESIVAGNNILEELPELQNLPFLTTIYADNN----- 247 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC--T-------TCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-----
T ss_pred CcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc--C-------cccEEECcCCcCCcccccCCCCCCCEEECCCC-----
Confidence 5788888 6999999999999999987777543 3 67777777764433333334444443322111
Q ss_pred ccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCccc
Q 045843 666 MEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEG 745 (913)
Q Consensus 666 ~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 745 (913)
.+..+...+ ..++.|.+. .+....++.. +++|+.|++++|... .+..
T Consensus 248 --------------~l~~l~~~~-~~L~~L~l~-------~N~l~~l~~~----~~~L~~L~ls~N~l~-~l~~------ 294 (454)
T 1jl5_A 248 --------------LLKTLPDLP-PSLEALNVR-------DNYLTDLPEL----PQSLTFLDVSENIFS-GLSE------ 294 (454)
T ss_dssp --------------CCSSCCSCC-TTCCEEECC-------SSCCSCCCCC----CTTCCEEECCSSCCS-EESC------
T ss_pred --------------cCCcccccc-cccCEEECC-------CCcccccCcc----cCcCCEEECcCCccC-cccC------
Confidence 111111111 345555544 3344444432 368899999885432 3221
Q ss_pred ccccCCceEecccccccchhcccccccccc-ccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcc
Q 045843 746 VTFQHLKKLHISHLPKLMHIWKGSIQSGSL-IMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSA 824 (913)
Q Consensus 746 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l-~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~ 824 (913)
.+++|+.|+++++. +... ..+ ++|+.|++++ +.+..+ | . .+++|+.|++++|. ++.++
T Consensus 295 -~~~~L~~L~l~~N~-l~~i-------~~~~~~L~~L~Ls~-N~l~~l-p-~---~~~~L~~L~L~~N~-l~~lp----- 353 (454)
T 1jl5_A 295 -LPPNLYYLNASSNE-IRSL-------CDLPPSLEELNVSN-NKLIEL-P-A---LPPRLERLIASFNH-LAEVP----- 353 (454)
T ss_dssp -CCTTCCEEECCSSC-CSEE-------CCCCTTCCEEECCS-SCCSCC-C-C---CCTTCCEEECCSSC-CSCCC-----
T ss_pred -cCCcCCEEECcCCc-CCcc-------cCCcCcCCEEECCC-Cccccc-c-c---cCCcCCEEECCCCc-ccccc-----
Confidence 24688999886642 1111 123 5899999988 456665 2 1 26889999998875 44453
Q ss_pred cCCCCCCccceeecccccccc--cccccCccCC-------------CCccEEeeecCcccc--cccCCCc
Q 045843 825 VDSRAFPKLKSFQLINLPKLS--SICHNMSLAW-------------PLLETITIKACDELR--NFPSTIE 877 (913)
Q Consensus 825 ~~~~~f~~L~~L~l~~~~~l~--~i~~~~~~~~-------------p~L~~L~i~~C~~L~--~lP~~~~ 877 (913)
. .+++|+.|++++++-.. .+|. ....+ ++|+.|++++++--. .+|.++.
T Consensus 354 -~--~l~~L~~L~L~~N~l~~l~~ip~-~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 354 -E--LPQNLKQLHVEYNPLREFPDIPE-SVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp -C--CCTTCCEEECCSSCCSSCCCCCT-TCCEEECCC---------------------------------
T ss_pred -c--hhhhccEEECCCCCCCcCCCChH-HHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHh
Confidence 2 57889999998874332 3443 22223 789999999975433 5665443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=4.2e-17 Score=173.82 Aligned_cols=221 Identities=21% Similarity=0.259 Sum_probs=160.6
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceeecCCccC
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNCCQ 587 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c~~ 587 (913)
+.++..++.+..+|.. -.++|+.|++++|.++.+++..|..+++|++|++++|.++.+ |..+.++++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 4566777778777754 357899999999999999888889999999999999999977 67899999999999999655
Q ss_pred cccc-ChhhhccccCCEEecCCCcCCcCCCc-c-ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCC
Q 045843 588 LMRL-PAEVGDLHNLEILDLSHTGICCLPSE-I-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSP 664 (913)
Q Consensus 588 l~~l-P~~i~~L~~L~~L~L~~~~~~~lp~~-i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 664 (913)
+..+ |..++.+++|++|++++|.+..++.. + .++ +|++|++..+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~------------------------- 140 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-------ALQYLYLQDNA------------------------- 140 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------TCCEEECCSSC-------------------------
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-------CCCEEECCCCc-------------------------
Confidence 7777 67789999999999999998666443 4 677 88888876651
Q ss_pred CccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcc
Q 045843 665 HMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTE 744 (913)
Q Consensus 665 ~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 744 (913)
+..++ ...+..+++|++|+++++. +..+....+.
T Consensus 141 -------------------l~~~~-------------------------~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~- 174 (285)
T 1ozn_A 141 -------------------LQALP-------------------------DDTFRDLGNLTHLFLHGNR-ISSVPERAFR- 174 (285)
T ss_dssp -------------------CCCCC-------------------------TTTTTTCTTCCEEECCSSC-CCEECTTTTT-
T ss_pred -------------------ccccC-------------------------HhHhccCCCccEEECCCCc-ccccCHHHhc-
Confidence 11111 1113556778888888753 3244444355
Q ss_pred cccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchh
Q 045843 745 GVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEM 815 (913)
Q Consensus 745 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l 815 (913)
.+++|+.|++++..-.. .. +.....+++|+.|+|++ +.+..+ ++..+..+++|+.|++++|+..
T Consensus 175 --~l~~L~~L~l~~n~l~~-~~--~~~~~~l~~L~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 175 --GLHSLDRLLLHQNRVAH-VH--PHAFRDLGRLMTLYLFA-NNLSAL-PTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp --TCTTCCEEECCSSCCCE-EC--TTTTTTCTTCCEEECCS-SCCSCC-CHHHHTTCTTCCEEECCSSCEE
T ss_pred --CccccCEEECCCCcccc-cC--HhHccCcccccEeeCCC-CcCCcC-CHHHcccCcccCEEeccCCCcc
Confidence 67888888886643211 10 11123678899999998 466666 4467888999999999887643
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=6.1e-17 Score=184.66 Aligned_cols=221 Identities=18% Similarity=0.232 Sum_probs=159.1
Q ss_pred hhhhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceee
Q 045843 505 WEVANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALF 581 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~ 581 (913)
..+++.|++.+|.+..++.. ..+++|+.|++++|.+..+++..|.++++|++|+|++|.++.+|.. +.++++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 35899999999999887543 7899999999999999999988889999999999999999988765 88999999999
Q ss_pred cCCccCccccCh-hhhccccCCEEecCCCcC-CcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeec
Q 045843 582 LNNCCQLMRLPA-EVGDLHNLEILDLSHTGI-CCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVG 657 (913)
Q Consensus 582 L~~c~~l~~lP~-~i~~L~~L~~L~L~~~~~-~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~ 657 (913)
|++ +.+..+|. .+.++++|++|++++|.. ..+|... .++ +|++|++..+..
T Consensus 154 L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-------~L~~L~L~~n~l----------------- 208 (452)
T 3zyi_A 154 LRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-------NLKYLNLGMCNI----------------- 208 (452)
T ss_dssp CCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-------TCCEEECTTSCC-----------------
T ss_pred CCC-CCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-------CCCEEECCCCcc-----------------
Confidence 999 56777765 689999999999999654 7777654 677 888888776510
Q ss_pred cccCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEe
Q 045843 658 YNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISI 737 (913)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 737 (913)
..+ +. +..+++|+.|+++++... .+
T Consensus 209 ---------------------------~~~-------------------------~~--~~~l~~L~~L~Ls~N~l~-~~ 233 (452)
T 3zyi_A 209 ---------------------------KDM-------------------------PN--LTPLVGLEELEMSGNHFP-EI 233 (452)
T ss_dssp ---------------------------SSC-------------------------CC--CTTCTTCCEEECTTSCCS-EE
T ss_pred ---------------------------ccc-------------------------cc--ccccccccEEECcCCcCc-cc
Confidence 001 11 144556677777664333 44
Q ss_pred ecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCc
Q 045843 738 IDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCK 813 (913)
Q Consensus 738 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~ 813 (913)
.+..+. .+++|+.|++++..-.. .. +.....+++|+.|+|++ +.++.+ +...+..+++|+.|++++|+
T Consensus 234 ~~~~~~---~l~~L~~L~L~~n~l~~-~~--~~~~~~l~~L~~L~L~~-N~l~~~-~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 234 RPGSFH---GLSSLKKLWVMNSQVSL-IE--RNAFDGLASLVELNLAH-NNLSSL-PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CGGGGT---TCTTCCEEECTTSCCCE-EC--TTTTTTCTTCCEEECCS-SCCSCC-CTTSSTTCTTCCEEECCSSC
T ss_pred Cccccc---CccCCCEEEeCCCcCce-EC--HHHhcCCCCCCEEECCC-CcCCcc-ChHHhccccCCCEEEccCCC
Confidence 444344 56677777775432111 10 11123567777777777 456655 33556677788888877665
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=7.8e-17 Score=188.62 Aligned_cols=259 Identities=18% Similarity=0.126 Sum_probs=196.1
Q ss_pred CceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEEecC
Q 045843 528 CRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEILDLS 607 (913)
Q Consensus 528 ~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~L~ 607 (913)
.++++|++++|.++.+|..++ ++|++|+|++|.++.+|. .+.+|++|+|++ +.++.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSG-NQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECS-CCCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCC-CcCCcCCC---CCCCCCEEECc
Confidence 358999999999999998653 899999999999999998 678999999999 57889997 78999999999
Q ss_pred CCcCCcCCCccccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecCCCCC
Q 045843 608 HTGICCLPSEIDLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFADGEGF 687 (913)
Q Consensus 608 ~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l 687 (913)
+|.+..+|. .++ +|+.|++..+.... +...
T Consensus 110 ~N~l~~l~~--~l~-------~L~~L~L~~N~l~~-----------------------------------------lp~~ 139 (622)
T 3g06_A 110 SNPLTHLPA--LPS-------GLCKLWIFGNQLTS-----------------------------------------LPVL 139 (622)
T ss_dssp SCCCCCCCC--CCT-------TCCEEECCSSCCSC-----------------------------------------CCCC
T ss_pred CCcCCCCCC--CCC-------CcCEEECCCCCCCc-----------------------------------------CCCC
Confidence 999988887 445 78888887662110 0000
Q ss_pred chhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEecccccccchhcc
Q 045843 688 PDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWK 767 (913)
Q Consensus 688 ~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~ 767 (913)
. ..|+.|.+. .+.+..++. .+++|+.|.+++|... .++ . .+++|+.|+++++. +....
T Consensus 140 l-~~L~~L~Ls-------~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~-~------~~~~L~~L~Ls~N~-l~~l~- 197 (622)
T 3g06_A 140 P-PGLQELSVS-------DNQLASLPA----LPSELCKLWAYNNQLT-SLP-M------LPSGLQELSVSDNQ-LASLP- 197 (622)
T ss_dssp C-TTCCEEECC-------SSCCSCCCC----CCTTCCEEECCSSCCS-CCC-C------CCTTCCEEECCSSC-CSCCC-
T ss_pred C-CCCCEEECc-------CCcCCCcCC----ccCCCCEEECCCCCCC-CCc-c------cCCCCcEEECCCCC-CCCCC-
Confidence 0 344555554 334444443 3468999999985433 333 2 57899999997643 22111
Q ss_pred ccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccc
Q 045843 768 GSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSI 847 (913)
Q Consensus 768 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i 847 (913)
..+++|+.|++++ +.+..+ + ..+++|+.|++++|. ++.++ ..+++|+.|+++++ .++.+
T Consensus 198 -----~~~~~L~~L~L~~-N~l~~l-~----~~~~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~Ls~N-~L~~l 256 (622)
T 3g06_A 198 -----TLPSELYKLWAYN-NRLTSL-P----ALPSGLKELIVSGNR-LTSLP--------VLPSELKELMVSGN-RLTSL 256 (622)
T ss_dssp -----CCCTTCCEEECCS-SCCSSC-C----CCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CCSCC
T ss_pred -----CccchhhEEECcC-Cccccc-C----CCCCCCCEEEccCCc-cCcCC--------CCCCcCcEEECCCC-CCCcC
Confidence 1468999999999 566666 2 236899999999885 44443 46799999999997 67776
Q ss_pred cccCccCCCCccEEeeecCcccccccCCCcCCCCcceeeeccccccc
Q 045843 848 CHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSS 894 (913)
Q Consensus 848 ~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~ 894 (913)
+. .+++|+.|++++| .++.+|..+.++++|+.+++..+-+.+
T Consensus 257 p~----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 257 PM----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CC----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred Cc----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCC
Confidence 65 6799999999997 888999999999999999999887654
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=7.7e-17 Score=183.14 Aligned_cols=221 Identities=16% Similarity=0.246 Sum_probs=165.1
Q ss_pred hhhhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceee
Q 045843 505 WEVANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALF 581 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~ 581 (913)
..+++.|.+.+|.+..++.. ..+++|++|++++|.+..+++..|.++++|++|+|++|.++.+|. .+.++.+|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 35789999999999887643 789999999999999999998889999999999999999998876 689999999999
Q ss_pred cCCccCccccCh-hhhccccCCEEecCCCcC-CcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeec
Q 045843 582 LNNCCQLMRLPA-EVGDLHNLEILDLSHTGI-CCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVG 657 (913)
Q Consensus 582 L~~c~~l~~lP~-~i~~L~~L~~L~L~~~~~-~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~ 657 (913)
|++ +.+..+|. .+.++++|++|++++|.. ..+|... .++ +|++|++..+.
T Consensus 143 L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-------~L~~L~L~~n~------------------ 196 (440)
T 3zyj_A 143 LRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-------NLRYLNLAMCN------------------ 196 (440)
T ss_dssp CCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-------SCCEEECTTSC------------------
T ss_pred CCC-CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-------ccCeecCCCCc------------------
Confidence 999 56777765 689999999999999654 7777654 777 88888877651
Q ss_pred cccCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEe
Q 045843 658 YNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISI 737 (913)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 737 (913)
+..+ +. +..+++|+.|++++|. +..+
T Consensus 197 --------------------------l~~~-------------------------~~--~~~l~~L~~L~Ls~N~-l~~~ 222 (440)
T 3zyj_A 197 --------------------------LREI-------------------------PN--LTPLIKLDELDLSGNH-LSAI 222 (440)
T ss_dssp --------------------------CSSC-------------------------CC--CTTCSSCCEEECTTSC-CCEE
T ss_pred --------------------------Cccc-------------------------cc--cCCCcccCEEECCCCc-cCcc
Confidence 0011 11 1455677788887753 3255
Q ss_pred ecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCc
Q 045843 738 IDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCK 813 (913)
Q Consensus 738 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~ 813 (913)
.+..+. .+++|+.|++++.. +.... +.....+++|+.|+|++ +.++.+ +...+..+++|+.|++++|+
T Consensus 223 ~~~~~~---~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~-~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 223 RPGSFQ---GLMHLQKLWMIQSQ-IQVIE--RNAFDNLQSLVEINLAH-NNLTLL-PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTTTT---TCTTCCEEECTTCC-CCEEC--TTSSTTCTTCCEEECTT-SCCCCC-CTTTTSSCTTCCEEECCSSC
T ss_pred Chhhhc---cCccCCEEECCCCc-eeEEC--hhhhcCCCCCCEEECCC-CCCCcc-ChhHhccccCCCEEEcCCCC
Confidence 454455 67788888885532 11111 11123678888888888 466666 44567778888888888765
No 62
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=7e-17 Score=176.21 Aligned_cols=270 Identities=13% Similarity=0.129 Sum_probs=181.2
Q ss_pred hhhhceeeeccccccCCCC--CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeec
Q 045843 505 WEVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFL 582 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L 582 (913)
.+.++.|++.+|.+..++. ...+++|++|++++|.++.+++..|..+++|++|++++|.++.+|..+. .+|++|++
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 3578999999999988865 4789999999999999999877778999999999999999999998776 89999999
Q ss_pred CCccCccccChh-hhccccCCEEecCCCcCCc--C-CCccccccccccccccceeecccccccccCCCCCccceeeeecc
Q 045843 583 NNCCQLMRLPAE-VGDLHNLEILDLSHTGICC--L-PSEIDLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGY 658 (913)
Q Consensus 583 ~~c~~l~~lP~~-i~~L~~L~~L~L~~~~~~~--l-p~~i~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~ 658 (913)
++ +.+..+|.. ++++++|++|++++|.+.. + |..+.-. +|++|++..+.
T Consensus 131 ~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-------~L~~L~l~~n~------------------- 183 (332)
T 2ft3_A 131 HD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-------KLNYLRISEAK------------------- 183 (332)
T ss_dssp CS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-------CCSCCBCCSSB-------------------
T ss_pred CC-CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-------ccCEEECcCCC-------------------
Confidence 99 577777754 8999999999999998843 2 2222111 45555544431
Q ss_pred ccCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEee
Q 045843 659 NQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISII 738 (913)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~ 738 (913)
+..++.. ..++|++|+++++... ...
T Consensus 184 --------------------------------------------------l~~l~~~---~~~~L~~L~l~~n~i~-~~~ 209 (332)
T 2ft3_A 184 --------------------------------------------------LTGIPKD---LPETLNELHLDHNKIQ-AIE 209 (332)
T ss_dssp --------------------------------------------------CSSCCSS---SCSSCSCCBCCSSCCC-CCC
T ss_pred --------------------------------------------------CCccCcc---ccCCCCEEECCCCcCC-ccC
Confidence 0111111 1135666666654322 333
Q ss_pred cCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhh
Q 045843 739 DGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEI 818 (913)
Q Consensus 739 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i 818 (913)
...+. .+++|+.|++++.. +.... +.....+++|+.|+|++ +.+..+ | ..+..+++|+.|++++|. ++.+
T Consensus 210 ~~~l~---~l~~L~~L~L~~N~-l~~~~--~~~~~~l~~L~~L~L~~-N~l~~l-p-~~l~~l~~L~~L~l~~N~-l~~~ 279 (332)
T 2ft3_A 210 LEDLL---RYSKLYRLGLGHNQ-IRMIE--NGSLSFLPTLRELHLDN-NKLSRV-P-AGLPDLKLLQVVYLHTNN-ITKV 279 (332)
T ss_dssp TTSST---TCTTCSCCBCCSSC-CCCCC--TTGGGGCTTCCEEECCS-SCCCBC-C-TTGGGCTTCCEEECCSSC-CCBC
T ss_pred HHHhc---CCCCCCEEECCCCc-CCcCC--hhHhhCCCCCCEEECCC-CcCeec-C-hhhhcCccCCEEECCCCC-CCcc
Confidence 23344 56677777775532 11110 11123688999999998 466666 3 458889999999999876 4444
Q ss_pred hcCCcc-c-CCCCCCccceeecccccccc-cccccCccCCCCccEEeeecCc
Q 045843 819 IEAGSA-V-DSRAFPKLKSFQLINLPKLS-SICHNMSLAWPLLETITIKACD 867 (913)
Q Consensus 819 ~~~~~~-~-~~~~f~~L~~L~l~~~~~l~-~i~~~~~~~~p~L~~L~i~~C~ 867 (913)
+..... . ....++.|+.|++.++|... .+....+..+++|+.|++++|.
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 421111 0 11236789999999987431 3333256678999999999875
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=2.2e-16 Score=170.10 Aligned_cols=244 Identities=17% Similarity=0.169 Sum_probs=161.8
Q ss_pred eEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceeecCCccCcccc---ChhhhccccCCEEec
Q 045843 531 LTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALFLNNCCQLMRL---PAEVGDLHNLEILDL 606 (913)
Q Consensus 531 r~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~L~~c~~l~~l---P~~i~~L~~L~~L~L 606 (913)
+.++++++.++.+|..+ .++|++|+|++|.++.+|.. +.++++|++|+|++ +.+..+ |..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS-NGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCC-CccCcccCcccccccccccCEEEC
Confidence 56788888899998754 47899999999999999876 68999999999999 566654 678889999999999
Q ss_pred CCCcCCcCCCcc-ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecCCC
Q 045843 607 SHTGICCLPSEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFADGE 685 (913)
Q Consensus 607 ~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~ 685 (913)
++|.+..+|..+ .++ +|++|++..+. +..+.
T Consensus 86 s~n~i~~l~~~~~~l~-------~L~~L~l~~n~-----------------------------------------l~~~~ 117 (306)
T 2z66_A 86 SFNGVITMSSNFLGLE-------QLEHLDFQHSN-----------------------------------------LKQMS 117 (306)
T ss_dssp CSCSEEEEEEEEETCT-------TCCEEECTTSE-----------------------------------------EESST
T ss_pred CCCccccChhhcCCCC-------CCCEEECCCCc-----------------------------------------ccccc
Confidence 999998787766 777 88888877651 11110
Q ss_pred CCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEecccccccchh
Q 045843 686 GFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHI 765 (913)
Q Consensus 686 ~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~ 765 (913)
.. . .+..+++|++|+++++... ......+. .+++|+.|+++++.-....
T Consensus 118 ~~-------------------------~--~~~~l~~L~~L~l~~n~l~-~~~~~~~~---~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 118 EF-------------------------S--VFLSLRNLIYLDISHTHTR-VAFNGIFN---GLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp TT-------------------------T--TTTTCTTCCEEECTTSCCE-ECSTTTTT---TCTTCCEEECTTCEEGGGE
T ss_pred cc-------------------------h--hhhhccCCCEEECCCCcCC-ccchhhcc---cCcCCCEEECCCCcccccc
Confidence 00 0 1245567777777765432 33333344 5677777777654321100
Q ss_pred ccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccc
Q 045843 766 WKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLS 845 (913)
Q Consensus 766 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~ 845 (913)
.+.....+++|+.|+|++| .+..+ ++..+..+++|+.|++++|.. +.++. .....+++|+.|+++++. +.
T Consensus 167 --~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N~l-~~~~~----~~~~~l~~L~~L~L~~N~-l~ 236 (306)
T 2z66_A 167 --LPDIFTELRNLTFLDLSQC-QLEQL-SPTAFNSLSSLQVLNMSHNNF-FSLDT----FPYKCLNSLQVLDYSLNH-IM 236 (306)
T ss_dssp --ECSCCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTSCC-SBCCS----GGGTTCTTCCEEECTTSC-CC
T ss_pred --chhHHhhCcCCCEEECCCC-CcCCc-CHHHhcCCCCCCEEECCCCcc-CccCh----hhccCcccCCEeECCCCC-Cc
Confidence 0111235777888888874 45555 235667778888888877753 32321 134567778888887774 33
Q ss_pred cccccCccCCC-CccEEeeecCc
Q 045843 846 SICHNMSLAWP-LLETITIKACD 867 (913)
Q Consensus 846 ~i~~~~~~~~p-~L~~L~i~~C~ 867 (913)
.........+| +|+.|++++|+
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCHHHHHhhhccCCEEEccCCC
Confidence 33222445554 78888887764
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=8.5e-18 Score=182.07 Aligned_cols=248 Identities=15% Similarity=0.116 Sum_probs=138.3
Q ss_pred CCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEEe
Q 045843 526 KCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEILD 605 (913)
Q Consensus 526 ~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~ 605 (913)
.+++|+.|++++|.++.+++..|..+++|++|+|++|.++.+++ ++.+++|++|++++ +.+..+| .+++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~-n~l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN-NYVQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS-SEEEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC-Ccccccc----CCCCcCEEE
Confidence 34566666666666666666556666666666666666665544 66666666666666 3455544 236666666
Q ss_pred cCCCcCCcCCCccccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecCCC
Q 045843 606 LSHTGICCLPSEIDLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFADGE 685 (913)
Q Consensus 606 L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~ 685 (913)
+++|.+..+|.. .++ +|++|++..+
T Consensus 106 l~~n~l~~~~~~-~~~-------~L~~L~l~~N----------------------------------------------- 130 (317)
T 3o53_A 106 AANNNISRVSCS-RGQ-------GKKNIYLANN----------------------------------------------- 130 (317)
T ss_dssp CCSSCCSEEEEC-CCS-------SCEEEECCSS-----------------------------------------------
T ss_pred CCCCccCCcCcc-ccC-------CCCEEECCCC-----------------------------------------------
Confidence 666665433321 122 4555554443
Q ss_pred CCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEecccccccchh
Q 045843 686 GFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHI 765 (913)
Q Consensus 686 ~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~ 765 (913)
.+..++...+..+++|++|+++++... ......+.. .+++|+.|+++++. +...
T Consensus 131 ----------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~--~l~~L~~L~L~~N~-l~~~ 184 (317)
T 3o53_A 131 ----------------------KITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA--SSDTLEHLNLQYNF-IYDV 184 (317)
T ss_dssp ----------------------CCCSGGGBCTGGGSSEEEEECTTSCCC-EEEGGGGGG--GTTTCCEEECTTSC-CCEE
T ss_pred ----------------------CCCCccchhhhccCCCCEEECCCCCCC-cccHHHHhh--ccCcCCEEECCCCc-Cccc
Confidence 112222222345567777777764333 333322211 35677777775533 1111
Q ss_pred ccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeeccccccc-
Q 045843 766 WKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKL- 844 (913)
Q Consensus 766 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l- 844 (913)
. ....+++|+.|+|++ +.++.+ + +.+..+++|+.|++++|. ++.++. ....+++|+.|++++++-.
T Consensus 185 ~----~~~~l~~L~~L~Ls~-N~l~~l-~-~~~~~l~~L~~L~L~~N~-l~~l~~-----~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 185 K----GQVVFAKLKTLDLSS-NKLAFM-G-PEFQSAAGVTWISLRNNK-LVLIEK-----ALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp E----CCCCCTTCCEEECCS-SCCCEE-C-GGGGGGTTCSEEECTTSC-CCEECT-----TCCCCTTCCEEECTTCCCBH
T ss_pred c----cccccccCCEEECCC-CcCCcc-h-hhhcccCcccEEECcCCc-ccchhh-----HhhcCCCCCEEEccCCCccC
Confidence 0 112467777777777 455555 2 336677777777777764 444543 4556677777777776543
Q ss_pred ccccccCccCCCCccEEeeecCcccccccC
Q 045843 845 SSICHNMSLAWPLLETITIKACDELRNFPS 874 (913)
Q Consensus 845 ~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~ 874 (913)
..++. ....+++|+.|++.+|+.++..+.
T Consensus 252 ~~~~~-~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 252 GTLRD-FFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHH-HHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred cCHHH-HHhccccceEEECCCchhccCCch
Confidence 22222 445667777777776666655543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=1.7e-16 Score=171.73 Aligned_cols=262 Identities=14% Similarity=0.111 Sum_probs=186.0
Q ss_pred hhhceeeeccccccCCCC--CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecC
Q 045843 506 EVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLN 583 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~ 583 (913)
++++.|++.+|.+..++. ...+++|++|++++|.+...++ |..+++|++|++++|.++.+|. +++|++|+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~ 107 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEECC
Confidence 479999999999988774 3789999999999999887776 7999999999999999988774 3899999999
Q ss_pred CccCccccChhhhccccCCEEecCCCcCCcCCCc-c-ccccccccccccceeecccccccccCCCCCccceeeeeccccC
Q 045843 584 NCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSE-I-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQR 661 (913)
Q Consensus 584 ~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~-i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~ 661 (913)
+ +.+..+|.. .+++|++|++++|.+..++.. + .++ +|++|++..+..
T Consensus 108 ~-n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~-------~L~~L~Ls~N~l--------------------- 156 (317)
T 3o53_A 108 N-NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRS-------RVQYLDLKLNEI--------------------- 156 (317)
T ss_dssp S-SCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGS-------SEEEEECTTSCC---------------------
T ss_pred C-CccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccC-------CCCEEECCCCCC---------------------
Confidence 9 577777643 478999999999999766543 3 677 888888776610
Q ss_pred CCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCC
Q 045843 662 SSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGN 741 (913)
Q Consensus 662 ~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 741 (913)
..+++. .+ ...+++|++|++++|... .+...
T Consensus 157 -----------------------~~~~~~-----------------------~~-~~~l~~L~~L~L~~N~l~-~~~~~- 187 (317)
T 3o53_A 157 -----------------------DTVNFA-----------------------EL-AASSDTLEHLNLQYNFIY-DVKGQ- 187 (317)
T ss_dssp -----------------------CEEEGG-----------------------GG-GGGTTTCCEEECTTSCCC-EEECC-
T ss_pred -----------------------CcccHH-----------------------HH-hhccCcCCEEECCCCcCc-ccccc-
Confidence 000000 00 134567888888885433 44322
Q ss_pred CcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchh-Hhhhc
Q 045843 742 LTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEM-EEIIE 820 (913)
Q Consensus 742 l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l-~~i~~ 820 (913)
. .+++|+.|+++++.- ... +.....+++|+.|+|++ +.++.+ | ..+..+++|+.|++++|+.. ..++.
T Consensus 188 -~---~l~~L~~L~Ls~N~l-~~l---~~~~~~l~~L~~L~L~~-N~l~~l-~-~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 188 -V---VFAKLKTLDLSSNKL-AFM---GPEFQSAAGVTWISLRN-NKLVLI-E-KALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp -C---CCTTCCEEECCSSCC-CEE---CGGGGGGTTCSEEECTT-SCCCEE-C-TTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred -c---ccccCCEEECCCCcC-Ccc---hhhhcccCcccEEECcC-Ccccch-h-hHhhcCCCCCEEEccCCCccCcCHHH
Confidence 2 478899999866422 111 11123688999999999 466666 3 45788899999999988866 34443
Q ss_pred CCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccc
Q 045843 821 AGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELR 870 (913)
Q Consensus 821 ~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~ 870 (913)
....+++|+.|++.+++.++.... .....+.+....-..|..+.
T Consensus 257 -----~~~~~~~L~~l~l~~~~~l~~~~~-~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 257 -----FFSKNQRVQTVAKQTVKKLTGQNE-EECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp -----HHHTCHHHHHHHHHHHHHHHSSSS-CCCSSTTCEEETTEEEBCCT
T ss_pred -----HHhccccceEEECCCchhccCCch-hccCCCceecccceeeccCC
Confidence 556788999999988877766544 33334444444444565554
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=1.2e-16 Score=183.38 Aligned_cols=239 Identities=15% Similarity=0.111 Sum_probs=148.7
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEE
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEIL 604 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L 604 (913)
..+++|++|++++|.+..+++..|..+++|++|+|++|.++.+++ ++.+++|++|+|++ +.+..+|. .++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN-NYVQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCS-SEEEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecC-CcCCCCCC----CCCcCEE
Confidence 345689999999998888887778899999999999999886665 88899999999998 56777663 3889999
Q ss_pred ecCCCcCCcCCCccccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecCC
Q 045843 605 DLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFADG 684 (913)
Q Consensus 605 ~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l 684 (913)
++++|.+..+|.. .++ +|+.|++..+..
T Consensus 105 ~L~~N~l~~~~~~-~l~-------~L~~L~L~~N~l-------------------------------------------- 132 (487)
T 3oja_A 105 HAANNNISRVSCS-RGQ-------GKKNIYLANNKI-------------------------------------------- 132 (487)
T ss_dssp ECCSSCCCCEEEC-CCS-------SCEEEECCSSCC--------------------------------------------
T ss_pred ECcCCcCCCCCcc-ccC-------CCCEEECCCCCC--------------------------------------------
Confidence 9999888554432 233 677777665511
Q ss_pred CCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEecccccccch
Q 045843 685 EGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMH 764 (913)
Q Consensus 685 ~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~ 764 (913)
. .++...+..+++|+.|+++++... ...+..+.. .+++|+.|+++++. +..
T Consensus 133 ~-------------------------~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~--~l~~L~~L~Ls~N~-l~~ 183 (487)
T 3oja_A 133 T-------------------------MLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA--SSDTLEHLNLQYNF-IYD 183 (487)
T ss_dssp C-------------------------SGGGBCGGGGSSEEEEECTTSCCC-EEEGGGGGG--GTTTCCEEECTTSC-CCE
T ss_pred C-------------------------CCCchhhcCCCCCCEEECCCCCCC-CcChHHHhh--hCCcccEEecCCCc-ccc
Confidence 0 111111244566777777664333 333322211 35677777775533 111
Q ss_pred hccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeeccccccc
Q 045843 765 IWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKL 844 (913)
Q Consensus 765 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l 844 (913)
. .....+++|+.|+|++ +.+..+. +.+..+++|+.|++++|. +..++. ....+++|+.|++++++-.
T Consensus 184 ~----~~~~~l~~L~~L~Ls~-N~l~~~~--~~~~~l~~L~~L~Ls~N~-l~~lp~-----~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 V----KGQVVFAKLKTLDLSS-NKLAFMG--PEFQSAAGVTWISLRNNK-LVLIEK-----ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp E----ECCCCCTTCCEEECCS-SCCCEEC--GGGGGGTTCSEEECTTSC-CCEECT-----TCCCCTTCCEEECTTCCBC
T ss_pred c----cccccCCCCCEEECCC-CCCCCCC--HhHcCCCCccEEEecCCc-Ccccch-----hhccCCCCCEEEcCCCCCc
Confidence 1 1112467777777777 4555552 346677777777777665 334443 4556677777777776543
Q ss_pred -ccccccCccCCCCccEEeee
Q 045843 845 -SSICHNMSLAWPLLETITIK 864 (913)
Q Consensus 845 -~~i~~~~~~~~p~L~~L~i~ 864 (913)
..++. ....++.|+.|++.
T Consensus 251 c~~~~~-~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 251 CGTLRD-FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHH-HHTTCHHHHHHHHH
T ss_pred CcchHH-HHHhCCCCcEEecc
Confidence 12222 34455666666664
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=2.5e-15 Score=160.00 Aligned_cols=199 Identities=22% Similarity=0.278 Sum_probs=148.8
Q ss_pred hhhhceeeeccccccCCCC--CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCc-cccc-CccccCccCccee
Q 045843 505 WEVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTK-IKLL-PSSISSLTNLKAL 580 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~-i~~l-p~~i~~L~~L~~L 580 (913)
+.++++|++.+|.+..++. ...+++|++|++++|.++.+++..|..+++|++|++++|. +..+ |..+.++++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4689999999999998875 3789999999999999999877778999999999999997 8877 6789999999999
Q ss_pred ecCCccCcccc-ChhhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeec
Q 045843 581 FLNNCCQLMRL-PAEVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVG 657 (913)
Q Consensus 581 ~L~~c~~l~~l-P~~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~ 657 (913)
++++| .+..+ |..++++++|++|++++|.+..+|... .++ +|++|++..+..
T Consensus 111 ~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~l----------------- 165 (285)
T 1ozn_A 111 HLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-------NLTHLFLHGNRI----------------- 165 (285)
T ss_dssp ECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------TCCEEECCSSCC-----------------
T ss_pred ECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-------CccEEECCCCcc-----------------
Confidence 99995 55555 667899999999999999998777653 777 888888776510
Q ss_pred cccCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEe
Q 045843 658 YNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISI 737 (913)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~ 737 (913)
..+ +...+..+++|++|+++++... ..
T Consensus 166 ---------------------------~~~-------------------------~~~~~~~l~~L~~L~l~~n~l~-~~ 192 (285)
T 1ozn_A 166 ---------------------------SSV-------------------------PERAFRGLHSLDRLLLHQNRVA-HV 192 (285)
T ss_dssp ---------------------------CEE-------------------------CTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred ---------------------------ccc-------------------------CHHHhcCccccCEEECCCCccc-cc
Confidence 001 1101245667888888775433 44
Q ss_pred ecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCc
Q 045843 738 IDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCH 787 (913)
Q Consensus 738 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~ 787 (913)
.+..+. .+++|+.|++++.. +.... +.....+++|+.|+|++++
T Consensus 193 ~~~~~~---~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 193 HPHAFR---DLGRLMTLYLFANN-LSALP--TEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTTTT---TCTTCCEEECCSSC-CSCCC--HHHHTTCTTCCEEECCSSC
T ss_pred CHhHcc---CcccccEeeCCCCc-CCcCC--HHHcccCcccCEEeccCCC
Confidence 444455 67888888886532 11110 0112367889999998854
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=8.3e-16 Score=176.30 Aligned_cols=235 Identities=14% Similarity=0.073 Sum_probs=167.6
Q ss_pred CCcccEEeccCCcccccC-ccccCccCcceeecCCccCccccChhhhccccCCEEecCCCcCCcCCCccccccccccccc
Q 045843 551 MCSLQLLDLHDTKIKLLP-SSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEIDLTTLCFYFPN 629 (913)
Q Consensus 551 l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i~L~~L~~~~~~ 629 (913)
+++|++|+|++|.++.+| ..++++++|++|+|++ +.+..+|+ ++.+++|++|++++|.+..+|.. + +
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~---~-------~ 100 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLD-LESLSTLRTLDLNNNYVQELLVG---P-------S 100 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTT-SCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC---T-------T
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeC-CCCCCCcc-cccCCCCCEEEecCCcCCCCCCC---C-------C
Confidence 348999999999999775 6899999999999999 56665554 99999999999999988655532 3 7
Q ss_pred cceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccc
Q 045843 630 VGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTA 709 (913)
Q Consensus 630 L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~ 709 (913)
|++|++..+. +..++
T Consensus 101 L~~L~L~~N~--------------------------------------------l~~~~--------------------- 115 (487)
T 3oja_A 101 IETLHAANNN--------------------------------------------ISRVS--------------------- 115 (487)
T ss_dssp CCEEECCSSC--------------------------------------------CCCEE---------------------
T ss_pred cCEEECcCCc--------------------------------------------CCCCC---------------------
Confidence 7777766551 11110
Q ss_pred cccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEecccccccchhccccccc-cccccccEEeeccCcc
Q 045843 710 ANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQS-GSLIMLETLILKRCHG 788 (913)
Q Consensus 710 ~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~l~~L~~L~L~~c~~ 788 (913)
...+++|+.|++++|... ...+..+. .+++|+.|+++++.-.... +... ..+++|+.|+|++ +.
T Consensus 116 -------~~~l~~L~~L~L~~N~l~-~~~~~~~~---~l~~L~~L~Ls~N~l~~~~---~~~l~~~l~~L~~L~Ls~-N~ 180 (487)
T 3oja_A 116 -------CSRGQGKKNIYLANNKIT-MLRDLDEG---CRSRVQYLDLKLNEIDTVN---FAELAASSDTLEHLNLQY-NF 180 (487)
T ss_dssp -------ECCCSSCEEEECCSSCCC-SGGGBCGG---GGSSEEEEECTTSCCCEEE---GGGGGGGTTTCCEEECTT-SC
T ss_pred -------ccccCCCCEEECCCCCCC-CCCchhhc---CCCCCCEEECCCCCCCCcC---hHHHhhhCCcccEEecCC-Cc
Confidence 023467889999886443 44444344 6889999999764321111 1111 2578999999999 45
Q ss_pred ccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcc
Q 045843 789 MKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDE 868 (913)
Q Consensus 789 l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~ 868 (913)
+..+ +....+++|+.|++++|. ++.++. ....+++|+.|+++++ .+..++. ....+++|+.|++++|+-
T Consensus 181 l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~l~~L~~L~Ls~N-~l~~lp~-~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 181 IYDV---KGQVVFAKLKTLDLSSNK-LAFMGP-----EFQSAAGVTWISLRNN-KLVLIEK-ALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCEE---ECCCCCTTCCEEECCSSC-CCEECG-----GGGGGTTCSEEECTTS-CCCEECT-TCCCCTTCCEEECTTCCB
T ss_pred cccc---cccccCCCCCEEECCCCC-CCCCCH-----hHcCCCCccEEEecCC-cCcccch-hhccCCCCCEEEcCCCCC
Confidence 6666 344568999999999886 444543 5667899999999987 4667776 567789999999999865
Q ss_pred c-ccccCCCcCCCCcceeeec
Q 045843 869 L-RNFPSTIENASKLRGIQCN 888 (913)
Q Consensus 869 L-~~lP~~~~~l~~L~~l~~~ 888 (913)
. ..+|..+..++.|+.+.+.
T Consensus 250 ~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcchHHHHHhCCCCcEEecc
Confidence 5 4666666677777776664
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=1e-15 Score=165.17 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=74.8
Q ss_pred ccccccEEeeccCcccccc--CchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccC
Q 045843 774 SLIMLETLILKRCHGMKTL--FSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNM 851 (913)
Q Consensus 774 ~l~~L~~L~L~~c~~l~~l--~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~ 851 (913)
.+++|+.|+|++| .++.+ ++...+.++++|+.|++++|......+. .....+++|+.|+++++ .++.++. .
T Consensus 199 ~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~l~~L~~L~Ls~N-~l~~ip~-~ 271 (312)
T 1wwl_A 199 KFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA----PSCDWPSQLNSLNLSFT-GLKQVPK-G 271 (312)
T ss_dssp SCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC----SCCCCCTTCCEEECTTS-CCSSCCS-S
T ss_pred cCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch----hhhhhcCCCCEEECCCC-ccChhhh-h
Confidence 5777888888874 45532 1223445678888888888764332211 13345688888888887 4566665 2
Q ss_pred ccCCCCccEEeeecCcccccccCCCcCCCCcceeeeccccccc
Q 045843 852 SLAWPLLETITIKACDELRNFPSTIENASKLRGIQCNQAWWSS 894 (913)
Q Consensus 852 ~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l~~~~~~~~~ 894 (913)
.. ++|+.|++++| .++.+|. +..+++|++++...+.|..
T Consensus 272 ~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 22 78999999885 7888876 7788889988888877654
No 70
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=8.2e-15 Score=160.87 Aligned_cols=106 Identities=18% Similarity=0.276 Sum_probs=67.8
Q ss_pred eeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccc-ccCc-cccCccCcceeecCCccC
Q 045843 510 RISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIK-LLPS-SISSLTNLKALFLNNCCQ 587 (913)
Q Consensus 510 ~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~-~lp~-~i~~L~~L~~L~L~~c~~ 587 (913)
.+...++.+..+|... .++++.|++++|.++.+|++.|.++++|++|+|++|.+. .+|. .|.++.+|+.+...+++.
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4455556666666542 356777777777777777766677777777777777764 4543 456777766544444456
Q ss_pred ccccC-hhhhccccCCEEecCCCcCCcCCC
Q 045843 588 LMRLP-AEVGDLHNLEILDLSHTGICCLPS 616 (913)
Q Consensus 588 l~~lP-~~i~~L~~L~~L~L~~~~~~~lp~ 616 (913)
+..+| ..++.+++|++|++++|.+..+|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred ccccCchhhhhccccccccccccccccCCc
Confidence 66663 446677777777777776655554
No 71
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=4e-14 Score=159.43 Aligned_cols=291 Identities=11% Similarity=0.096 Sum_probs=182.1
Q ss_pred ccccchHHHHHHHHHHH-hc------CCCcEEEE--ECCCCCcHHHHHHHHHHHhccc---CCCc-eEEEEEeCCCCCHH
Q 045843 160 EEVPSLNKHLKMLQECL-RN------VGTKRICI--WGPPGVGKTTIMENLHDAIGES---RQFD-FIFWVTVNSEGNIR 226 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L-~~------~~~~vi~I--~G~gG~GKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~ 226 (913)
..++||+.+++++.+++ .. .....+.| +|++|+||||||+.+++..... ..|. ..+|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 45789999999999988 42 24456666 9999999999999999876521 1222 35777777777899
Q ss_pred HHHHHHHHHccCCcc--CCChHHHHHHHHHHHc--cCCeEEEEeCCCCccc--------cccc-cCC--CC--C--CCce
Q 045843 227 DIQEVLLKRLDLRAE--DHNIDQRADMISEELK--DKSYVLFLDEVSTEIN--------LRDI-GIH--DE--H--KNGK 287 (913)
Q Consensus 227 ~i~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~--------~~~~-~~~--~~--~--~~s~ 287 (913)
.++..++.+++.... ..+.......+.+.+. +++++|||||+|.... +..+ ... .. . ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 999999999876543 2345566677777765 6799999999987432 2111 111 11 2 3445
Q ss_pred EEEEeechhhh-------h----cCCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhC------CcHHH
Q 045843 288 VVFACIFRNIC-------G----QIDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECG------GMPHM 350 (913)
Q Consensus 288 iivTTR~~~v~-------~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~------GlPla 350 (913)
+|+||+...+. . .....+.+++|+.++++++|.+.+........--.+....|++.|+ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 88888765422 1 1223499999999999999976643211111223567889999999 99976
Q ss_pred HHHHHHHh-h-----cC--CChHHHHHHHHhhcCCCCCCCCchHHHHHHHHHhccCCchhHHHHhhhhcccc--CCcccc
Q 045843 351 IKLIGSSL-A-----NV--SNPAIWRDMLSQLRSPSMAPKQELEEVYKSFKLVCDKLPSDKQLCLLYWAIFP--VGYELH 420 (913)
Q Consensus 351 i~~~~~~l-~-----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp--~~~~i~ 420 (913)
+..+.... . +. -+.+.+..++.... . ...+.-++..||.+.+.++..++.+. .+..++
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-----------~-~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-----------A-ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-----------c-cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 55554322 1 11 22333443333211 0 12345567889999999998888754 333556
Q ss_pred HHHHHHHHHhcCchhhhcchHHHHHHHHHHHHHHHHhcccccC
Q 045843 421 EDYIIECWRAEQFFACLRKLGEARDRGQSILDEFVKKSLLEKG 463 (913)
Q Consensus 421 ~~~Li~~W~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 463 (913)
..++...+..... ...+...........++++|+..+++...
T Consensus 330 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 330 AGLLRQRYEDASL-TMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHH-HHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 6666554422100 00000001134466789999999999764
No 72
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=1.8e-13 Score=150.29 Aligned_cols=285 Identities=12% Similarity=0.083 Sum_probs=178.0
Q ss_pred cccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC------CHHHHHHHH
Q 045843 159 MEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG------NIRDIQEVL 232 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~i~~~i 232 (913)
...++||+.+++.|.+++... +++.|+|+.|+|||||++++.+... .+|+.+.... +...+.+.+
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHHHH
Confidence 346789999999999998764 7999999999999999999997742 6777765432 566677777
Q ss_pred HHHccC-----------------Cc--cCCChHHHHHHHHHHHcc-CCeEEEEeCCCCcccc---------ccccCC-CC
Q 045843 233 LKRLDL-----------------RA--EDHNIDQRADMISEELKD-KSYVLFLDEVSTEINL---------RDIGIH-DE 282 (913)
Q Consensus 233 ~~~l~~-----------------~~--~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~---------~~~~~~-~~ 282 (913)
.+.+.. .. ...+..+....+.+.... ++.+||+||++....+ ..+... ..
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~ 161 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS 161 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh
Confidence 666543 00 113455566666665543 4999999999875431 111110 22
Q ss_pred CCCceEEEEeechhh-h------hc-------CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcH
Q 045843 283 HKNGKVVFACIFRNI-C------GQ-------IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMP 348 (913)
Q Consensus 283 ~~~s~iivTTR~~~v-~------~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 348 (913)
..+.++|+|++...+ . .. ....+.+.+|+.+|+.+++.+.+... ..+.-.+.+..|++.|+|.|
T Consensus 162 ~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~--~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 162 LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREV--NLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHHTTCH
T ss_pred cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhCCCH
Confidence 257889999886542 1 11 12479999999999999998764321 11122467889999999999
Q ss_pred HHHHHHHHHhhcCCChHHH-HHHHHhhcCCCCCCCCchHHHHHHH-HHhccCCchhHHHHhhhhccccCCccccHHHHHH
Q 045843 349 HMIKLIGSSLANVSNPAIW-RDMLSQLRSPSMAPKQELEEVYKSF-KLVCDKLPSDKQLCLLYWAIFPVGYELHEDYIIE 426 (913)
Q Consensus 349 lai~~~~~~l~~~~~~~~w-~~~~~~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~ 426 (913)
+++..++..+....+...+ ..+.+... ..+...+ .+.+ + ++..+..+..+|. + .++...+..
T Consensus 240 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~l~~-~-~~~~~~~l~~la~---g-~~~~~~l~~ 303 (350)
T 2qen_A 240 GWLVVFGVEYLRNGDFGRAMKRTLEVAK----------GLIMGELEELRR-R-SPRYVDILRAIAL---G-YNRWSLIRD 303 (350)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHHHHH-H-CHHHHHHHHHHHT---T-CCSHHHHHH
T ss_pred HHHHHHHHHHhccccHhHHHHHHHHHHH----------HHHHHHHHHHHh-C-ChhHHHHHHHHHh---C-CCCHHHHHH
Confidence 9999998765432122221 11111100 0011111 1112 2 6778888888887 2 234445544
Q ss_pred HHHhcCchhhhcchHHHHHHHHHHHHHHHHhcccccCCCccccc-hhHHHHHHH
Q 045843 427 CWRAEQFFACLRKLGEARDRGQSILDEFVKKSLLEKGRKASHYK-MFEHFQRAA 479 (913)
Q Consensus 427 ~W~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~-mHdlv~~~a 479 (913)
..-+.. - . ........+++.|++.+++.... ..|. .|++++.+.
T Consensus 304 ~~~~~~-~-~-----~~~~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 304 YLAVKG-T-K-----IPEPRLYALLENLKKMNWIVEED--NTYKIADPVVATVL 348 (350)
T ss_dssp HHHHTT-C-C-----CCHHHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHH
T ss_pred HHHHHh-C-C-----CCHHHHHHHHHHHHhCCCEEecC--CEEEEecHHHHHHH
Confidence 321110 0 0 11345678899999999998653 3354 477788765
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=1e-14 Score=156.92 Aligned_cols=101 Identities=25% Similarity=0.344 Sum_probs=61.3
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEE
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEIL 604 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L 604 (913)
..+++|+.|++++|.+..++. |..+++|++|++++|.++.+|. +.++++|++|++++ +.+..+| .++++++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG-NPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS-CCCSCCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccC-CcCCCch-hhcCCCCCCEE
Confidence 345566666666666665552 4666666666666666666665 66666666666666 3455554 46666666666
Q ss_pred ecCCCcCCcCCCcc-ccccccccccccceeecccc
Q 045843 605 DLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 605 ~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
++++|.+..+|. + .++ +|++|++..+
T Consensus 113 ~l~~n~l~~~~~-l~~l~-------~L~~L~l~~n 139 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLS-------NLQVLYLDLN 139 (308)
T ss_dssp ECTTSCCCCCGG-GTTCT-------TCCEEECCSS
T ss_pred ECCCCCCCCchh-hcCCC-------CCCEEECCCC
Confidence 666666655543 3 444 5555555443
No 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=1.4e-14 Score=159.06 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=78.9
Q ss_pred eEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCccCccccCh-hhhccccCCE-EecC
Q 045843 531 LTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCCQLMRLPA-EVGDLHNLEI-LDLS 607 (913)
Q Consensus 531 r~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~lP~-~i~~L~~L~~-L~L~ 607 (913)
++++.+++.++.+|.++ .+++++|+|++|+|+.+|. .|.+|++|++|+|++|...+.+|. .+.+|++|.+ +.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888888899998765 4689999999999999986 589999999999999654566765 4678888775 5666
Q ss_pred CCcCCcCCCcc--ccccccccccccceeeccccc
Q 045843 608 HTGICCLPSEI--DLTTLCFYFPNVGLLQNFINA 639 (913)
Q Consensus 608 ~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~ 639 (913)
+|++..+|... .++ +|++|++..+.
T Consensus 89 ~N~l~~l~~~~f~~l~-------~L~~L~l~~n~ 115 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLP-------NLQYLLISNTG 115 (350)
T ss_dssp ETTCCEECTTSBCCCT-------TCCEEEEEEEC
T ss_pred CCcccccCchhhhhcc-------ccccccccccc
Confidence 67887776655 788 89999988773
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=1.6e-14 Score=149.30 Aligned_cols=98 Identities=20% Similarity=0.292 Sum_probs=65.0
Q ss_pred cccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCc-ccccCc-cccCccCcceeecCCccCccccCh-
Q 045843 517 CLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTK-IKLLPS-SISSLTNLKALFLNNCCQLMRLPA- 593 (913)
Q Consensus 517 ~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~-i~~lp~-~i~~L~~L~~L~L~~c~~l~~lP~- 593 (913)
.+..+|. -.++|+.|++++|.++.+++..|..+++|++|++++|. ++.+|. .+.++++|++|++++|+.++.+|.
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 3555665 33467777777777777776666777777777777775 666654 566777777777776556666653
Q ss_pred hhhccccCCEEecCCCcCCcCCC
Q 045843 594 EVGDLHNLEILDLSHTGICCLPS 616 (913)
Q Consensus 594 ~i~~L~~L~~L~L~~~~~~~lp~ 616 (913)
.++++++|++|++++|.+..+|.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~ 122 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD 122 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC
T ss_pred HhCCCCCCCEEeCCCCCCccccc
Confidence 46667777777777766655554
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=1.6e-14 Score=149.37 Aligned_cols=210 Identities=15% Similarity=0.181 Sum_probs=109.5
Q ss_pred ccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCccCccccCh-hhhccccCCEEecCC-CcCCcCC
Q 045843 539 SLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCCQLMRLPA-EVGDLHNLEILDLSH-TGICCLP 615 (913)
Q Consensus 539 ~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~lP~-~i~~L~~L~~L~L~~-~~~~~lp 615 (913)
.++.+|. + ...|++|++++|+++.+|. .++++++|++|++++|..++.+|. .++++++|++|++++ |.+..+|
T Consensus 22 ~l~~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 3555555 2 2366777777777776654 566677777777776433666554 466677777777776 6666665
Q ss_pred Ccc--ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecCCCCCchhhHH
Q 045843 616 SEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVK 693 (913)
Q Consensus 616 ~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~ 693 (913)
... .++ +|++|++..+....... +..+..+ ..++
T Consensus 98 ~~~f~~l~-------~L~~L~l~~n~l~~lp~-----------------------------------~~~l~~L--~~L~ 133 (239)
T 2xwt_C 98 PDALKELP-------LLKFLGIFNTGLKMFPD-----------------------------------LTKVYST--DIFF 133 (239)
T ss_dssp TTSEECCT-------TCCEEEEEEECCCSCCC-----------------------------------CTTCCBC--CSEE
T ss_pred HHHhCCCC-------CCCEEeCCCCCCccccc-----------------------------------ccccccc--cccc
Confidence 443 566 66666666552111000 0011111 0011
Q ss_pred HhcccccccccccccccccCccccCcccCcc-eEEecccCCceEeecCCCcccccccCCceEecccccccchhccccccc
Q 045843 694 ILEQACAFELIGHRTAANLSDFGANKFGDVE-ACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQS 772 (913)
Q Consensus 694 ~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 772 (913)
.|.+. ++..+..++...+..+++|+ .|+++++. +..+....+. .++|+.|++++...+..... ...
T Consensus 134 ~L~l~------~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~----~~~L~~L~L~~n~~l~~i~~--~~~ 200 (239)
T 2xwt_C 134 ILEIT------DNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN----GTKLDAVYLNKNKYLTVIDK--DAF 200 (239)
T ss_dssp EEEEE------SCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTT----TCEEEEEECTTCTTCCEECT--TTT
T ss_pred EEECC------CCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcC----CCCCCEEEcCCCCCcccCCH--HHh
Confidence 22222 11133344433345666777 77776643 3233333233 25677777765432321111 111
Q ss_pred ccc-ccccEEeeccCccccccCchHHHhhcCCCcEEEEccCch
Q 045843 773 GSL-IMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKE 814 (913)
Q Consensus 773 ~~l-~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~ 814 (913)
..+ ++|+.|+|++ +.++.+ |. ..+++|+.|+++++..
T Consensus 201 ~~l~~~L~~L~l~~-N~l~~l-~~---~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQ-TSVTAL-PS---KGLEHLKELIARNTWT 238 (239)
T ss_dssp TTCSBCCSEEECTT-CCCCCC-CC---TTCTTCSEEECTTC--
T ss_pred hccccCCcEEECCC-CccccC-Ch---hHhccCceeeccCccC
Confidence 245 7788888877 556665 21 1677888888877653
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=2.3e-14 Score=151.24 Aligned_cols=121 Identities=24% Similarity=0.335 Sum_probs=71.1
Q ss_pred hhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCcc
Q 045843 507 VANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCC 586 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~ 586 (913)
.+..+.+..+.+........+++|+.|++++|.+..++. +..+++|++|++++|.++.++ .++++++|++|++++ +
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~-n 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG-N 95 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT-S
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC-C
Confidence 333444444444433333455667777777766665543 466777777777777766654 466777777777776 3
Q ss_pred CccccChh-hhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 587 QLMRLPAE-VGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 587 ~l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
.+..+|.. ++++++|++|++++|.+..+|... .++ +|++|++..+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~L~~n 143 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-------NLTYLNLAHN 143 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------TCCEEECCSS
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC-------CCCEEECCCC
Confidence 45555443 566777777777777665554432 445 5555555443
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=2.8e-16 Score=180.00 Aligned_cols=349 Identities=15% Similarity=0.118 Sum_probs=171.0
Q ss_pred hhhhceeeeccccccC-----CCCC-CCCCceeEEeeccCccccC-chHHHhcCC----cccEEeccCCccc-----ccC
Q 045843 505 WEVANRISLIRMCLST-----LPKR-PKCCRILTLLLQESSLAEL-PASFFGYMC----SLQLLDLHDTKIK-----LLP 568 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~l~~l-~~~~f~~l~----~Lr~LdLs~~~i~-----~lp 568 (913)
.++++.|++.+|.+.. ++.. ..+++|++|++++|.+... +..++..++ +|++|+|++|.++ .+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 3466677777666542 2221 4456777777777765542 223334455 5777777777766 356
Q ss_pred ccccCccCcceeecCCccCccc-cChhhh-----ccccCCEEecCCCcCCcC-----CCcc-ccccccccccccceeecc
Q 045843 569 SSISSLTNLKALFLNNCCQLMR-LPAEVG-----DLHNLEILDLSHTGICCL-----PSEI-DLTTLCFYFPNVGLLQNF 636 (913)
Q Consensus 569 ~~i~~L~~L~~L~L~~c~~l~~-lP~~i~-----~L~~L~~L~L~~~~~~~l-----p~~i-~L~~L~~~~~~L~~L~l~ 636 (913)
..+.++++|++|++++|. +.. .+..+. .+++|++|++++|.+... +..+ .++ +|++|++.
T Consensus 107 ~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-------~L~~L~L~ 178 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP-------DFKELTVS 178 (461)
T ss_dssp HHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT-------TCCEEECC
T ss_pred HHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC-------CCCEEECc
Confidence 667777777777777743 332 222222 244677777777766321 2222 344 67777766
Q ss_pred cccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecC--CCC-----CchhhHHHhcccccccccccccc
Q 045843 637 INASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFAD--GEG-----FPDAVVKILEQACAFELIGHRTA 709 (913)
Q Consensus 637 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~--l~~-----l~~~~L~~L~i~~~l~l~~~~~~ 709 (913)
.+...... ...+ . .+... ..+.+..+.+.. +.. ++ ..+..+.-...+.+.++ .+
T Consensus 179 ~n~i~~~~-~~~l---~--~~l~~-----------~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n-~l 239 (461)
T 1z7x_W 179 NNDINEAG-VRVL---C--QGLKD-----------SPCQLEALKLESCGVTSDNCRDLC-GIVASKASLRELALGSN-KL 239 (461)
T ss_dssp SSBCHHHH-HHHH---H--HHHHH-----------SCCCCCEEECTTSCCBTTHHHHHH-HHHHHCTTCCEEECCSS-BC
T ss_pred CCCcchHH-HHHH---H--HHHhc-----------CCCCceEEEccCCCCcHHHHHHHH-HHHHhCCCccEEeccCC-cC
Confidence 65221000 0000 0 00000 000011111111 111 11 11222121222222222 11
Q ss_pred cc-----cCccccCcccCcceEEecccCCceEe----ecCCCcccccccCCceEecccccccchhcccccc---cccccc
Q 045843 710 AN-----LSDFGANKFGDVEACIVEDCNEMISI----IDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQ---SGSLIM 777 (913)
Q Consensus 710 ~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~l~~ 777 (913)
.. +.......+++|++|++++|... .. +...+. .+++|++|+++++. +......... ....++
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~---~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGIT-AKGCGDLCRVLR---AKESLKELSLAGNE-LGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCC-HHHHHHHHHHHH---HCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCC
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCC-HHHHHHHHHHHh---hCCCcceEECCCCC-CchHHHHHHHHHhccCCcc
Confidence 11 11111234678888888886332 21 111122 47888888887643 2211000000 012368
Q ss_pred ccEEeeccCccccccC---chHHHhhcCCCcEEEEccCchhHhhhcCCcccCC-CCCCccceeecccccccc-----ccc
Q 045843 778 LETLILKRCHGMKTLF---SEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDS-RAFPKLKSFQLINLPKLS-----SIC 848 (913)
Q Consensus 778 L~~L~L~~c~~l~~l~---~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~-~~f~~L~~L~l~~~~~l~-----~i~ 848 (913)
|+.|+|++|. +.... -+..+..+++|+.|++++|......+. ...... ...++|+.|++++|. ++ .++
T Consensus 315 L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~ 391 (461)
T 1z7x_W 315 LESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-ELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA 391 (461)
T ss_dssp CCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH
T ss_pred ceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHH-HHHHHHcCCCCceEEEECCCCC-CChhhHHHHH
Confidence 8999998865 33320 024567789999999988853322111 000011 126789999998884 44 344
Q ss_pred ccCccCCCCccEEeeecCccccc---------ccCCCcCCCCcceeeecccccc
Q 045843 849 HNMSLAWPLLETITIKACDELRN---------FPSTIENASKLRGIQCNQAWWS 893 (913)
Q Consensus 849 ~~~~~~~p~L~~L~i~~C~~L~~---------lP~~~~~l~~L~~l~~~~~~~~ 893 (913)
. ....+++|+.|++++|+ ++. +|. ...+|+.+......|+
T Consensus 392 ~-~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~---~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 392 A-TLLANHSLRELDLSNNC-LGDAGILQLVESVRQ---PGCLLEQLVLYDIYWS 440 (461)
T ss_dssp H-HHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTS---TTCCCCEEECTTCCCC
T ss_pred H-HHHhCCCccEEECCCCC-CCHHHHHHHHHHhcc---CCcchhheeecccccC
Confidence 3 34557899999999874 332 232 2345666666655444
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.53 E-value=8.1e-14 Score=147.50 Aligned_cols=214 Identities=21% Similarity=0.256 Sum_probs=141.0
Q ss_pred eccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCccCcccc
Q 045843 513 LIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCCQLMRL 591 (913)
Q Consensus 513 l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~l 591 (913)
..+..+..+|... .++|++|++++|.++.+++..|.++++|++|++++|.++.++. .+.++.+|++|++++ +.+..+
T Consensus 14 c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~ 91 (276)
T 2z62_A 14 CMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSL 91 (276)
T ss_dssp CTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEE
T ss_pred ecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC-CccCcc
Confidence 3344555666532 2579999999998888888777889999999999999987764 688999999999999 456655
Q ss_pred C-hhhhccccCCEEecCCCcCCcCCCc-c-ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccc
Q 045843 592 P-AEVGDLHNLEILDLSHTGICCLPSE-I-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEF 668 (913)
Q Consensus 592 P-~~i~~L~~L~~L~L~~~~~~~lp~~-i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 668 (913)
| ..++++++|++|++++|.+..++.. + .++ +|++|++..+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~l---------------------------- 136 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-------TLKELNVAHNLI---------------------------- 136 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT-------TCCEEECCSSCC----------------------------
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCC-------CCCEEECcCCcc----------------------------
Confidence 4 6688999999999999988666653 3 666 788887765510
Q ss_pred cccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccc
Q 045843 669 DFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTF 748 (913)
Q Consensus 669 ~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 748 (913)
..+ .++.. +..+++|++|++++|... .+....+. .+
T Consensus 137 ----------------~~~-----------------------~l~~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~---~l 172 (276)
T 2z62_A 137 ----------------QSF-----------------------KLPEY-FSNLTNLEHLDLSSNKIQ-SIYCTDLR---VL 172 (276)
T ss_dssp ----------------CCC-----------------------CCCGG-GGGCTTCCEEECCSSCCC-EECGGGGH---HH
T ss_pred ----------------cee-----------------------cCchh-hccCCCCCEEECCCCCCC-cCCHHHhh---hh
Confidence 000 00111 355677888888875433 44433333 44
Q ss_pred cCCc----eEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCc
Q 045843 749 QHLK----KLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCK 813 (913)
Q Consensus 749 ~~L~----~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~ 813 (913)
++|+ .|++++.. +..... ......+|+.|+|++ +.++.+ +...+..+++|+.|++++|+
T Consensus 173 ~~L~~l~l~L~ls~n~-l~~~~~---~~~~~~~L~~L~L~~-n~l~~~-~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNP-MNFIQP---GAFKEIRLKELALDT-NQLKSV-PDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HTCTTCCEEEECCSSC-CCEECT---TSSCSCCEEEEECCS-SCCSCC-CTTTTTTCCSCCEEECCSSC
T ss_pred hhccccceeeecCCCc-ccccCc---cccCCCcccEEECCC-Cceeec-CHhHhcccccccEEEccCCc
Confidence 5555 56664422 111100 011234788888887 446666 33556778888888887665
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.52 E-value=1e-13 Score=146.20 Aligned_cols=107 Identities=30% Similarity=0.452 Sum_probs=62.4
Q ss_pred hceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceeecCCcc
Q 045843 508 ANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALFLNNCC 586 (913)
Q Consensus 508 ~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~L~~c~ 586 (913)
.+.+.+.++.+..+|... .++++.|++++|.+..+++..|..+++|++|+|++|.++.+|.. +.++++|++|++++ +
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~-n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-N 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS-S
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC-C
Confidence 445666666666655432 14566666666666666655556666666666666666666544 35566666666666 3
Q ss_pred CccccCh-hhhccccCCEEecCCCcCCcCCC
Q 045843 587 QLMRLPA-EVGDLHNLEILDLSHTGICCLPS 616 (913)
Q Consensus 587 ~l~~lP~-~i~~L~~L~~L~L~~~~~~~lp~ 616 (913)
.+..+|. .+.++++|++|++++|.+..+|.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 126 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPP 126 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCH
Confidence 4555543 24556666666666666544444
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=4.3e-15 Score=162.32 Aligned_cols=255 Identities=16% Similarity=0.153 Sum_probs=159.6
Q ss_pred ceeEEeeccCccccCchHHHhcC--CcccEEeccCCcccccCccccCccCcceeecCCccCcc-c-cChhhhccccCCEE
Q 045843 529 RILTLLLQESSLAELPASFFGYM--CSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLM-R-LPAEVGDLHNLEIL 604 (913)
Q Consensus 529 ~Lr~L~l~~~~l~~l~~~~f~~l--~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~-~-lP~~i~~L~~L~~L 604 (913)
.++.++++++.+. +..+..+ +.+++|++++|.+...+..+.++.+|++|++++|. +. . +|..+.++++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEE
Confidence 3567777776554 4445666 88999999998888777667888999999999864 44 3 77778889999999
Q ss_pred ecCCCcCC-cCCCcc-ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeec
Q 045843 605 DLSHTGIC-CLPSEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFA 682 (913)
Q Consensus 605 ~L~~~~~~-~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~ 682 (913)
++++|.+. ..|..+ .++ +|++|++..+.
T Consensus 124 ~L~~~~l~~~~~~~l~~~~-------~L~~L~L~~~~------------------------------------------- 153 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNS-------NLVRLNLSGCS------------------------------------------- 153 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCT-------TCSEEECTTCB-------------------------------------------
T ss_pred eCcCcccCHHHHHHHhcCC-------CCCEEECCCCC-------------------------------------------
Confidence 99988763 344333 555 77777766551
Q ss_pred CCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEe-ecCCCccccccc-CCceEeccccc
Q 045843 683 DGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISI-IDGNLTEGVTFQ-HLKKLHISHLP 760 (913)
Q Consensus 683 ~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~~~~~~-~L~~L~l~~~~ 760 (913)
.+.+..+. .. +..+++|++|++++|..+... +...+. .++ +|++|+++++.
T Consensus 154 ---~l~~~~l~--------------------~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 154 ---GFSEFALQ--------------------TL-LSSCSRLDELNLSWCFDFTEKHVQVAVA---HVSETITQLNLSGYR 206 (336)
T ss_dssp ---SCCHHHHH--------------------HH-HHHCTTCCEEECCCCTTCCHHHHHHHHH---HSCTTCCEEECCSCG
T ss_pred ---CCCHHHHH--------------------HH-HhcCCCCCEEcCCCCCCcChHHHHHHHH---hcccCCCEEEeCCCc
Confidence 00000010 00 245677888888887444221 111133 577 89999888764
Q ss_pred -ccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecc
Q 045843 761 -KLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLI 839 (913)
Q Consensus 761 -~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~ 839 (913)
.+..... +.....+++|+.|+|++|..+++.. +..+..+++|+.|++++|..+....- .....+++|+.|+++
T Consensus 207 ~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 207 KNLQKSDL-STLVRRCPNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVF 280 (336)
T ss_dssp GGSCHHHH-HHHHHHCTTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGG----GGGGGCTTCCEEECT
T ss_pred ccCCHHHH-HHHHhhCCCCCEEeCCCCCcCCHHH-HHHHhCCCCCCEeeCCCCCCCCHHHH----HHHhcCCCCCEEecc
Confidence 3321100 0111368899999999987665542 25778899999999999864332110 134568999999999
Q ss_pred cccccccccccCccCC-CCccEEeeecCcccccc-cCCC
Q 045843 840 NLPKLSSICHNMSLAW-PLLETITIKACDELRNF-PSTI 876 (913)
Q Consensus 840 ~~~~l~~i~~~~~~~~-p~L~~L~i~~C~~L~~l-P~~~ 876 (913)
+| +. ......+ ..|..|++++ +.++.. |..+
T Consensus 281 ~~--i~---~~~~~~l~~~l~~L~l~~-n~l~~~~~~~~ 313 (336)
T 2ast_B 281 GI--VP---DGTLQLLKEALPHLQINC-SHFTTIARPTI 313 (336)
T ss_dssp TS--SC---TTCHHHHHHHSTTSEESC-CCSCCTTCSSC
T ss_pred Cc--cC---HHHHHHHHhhCcceEEec-ccCccccCCcc
Confidence 88 22 2112222 2356666755 455554 4433
No 82
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.51 E-value=7.5e-13 Score=145.74 Aligned_cols=283 Identities=14% Similarity=0.135 Sum_probs=171.5
Q ss_pred cccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-----CCHHHHHHHHH
Q 045843 159 MEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE-----GNIRDIQEVLL 233 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~i~ 233 (913)
...++||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+... . ..+|+.+... .+.......+.
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 3467899999999999 765 6999999999999999999998864 2 2578887642 34455555544
Q ss_pred HHccC-------------C-----c------------cCCChHHHHHHHHHHHccCCeEEEEeCCCCcc-----ccccc-
Q 045843 234 KRLDL-------------R-----A------------EDHNIDQRADMISEELKDKSYVLFLDEVSTEI-----NLRDI- 277 (913)
Q Consensus 234 ~~l~~-------------~-----~------------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----~~~~~- 277 (913)
+.+.. . . .......+...+.+.-+ ++++|||||++..+ ++...
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 43310 0 0 01223334444433222 49999999997643 22221
Q ss_pred c-CCCCCCCceEEEEeechhh-h------hc-------CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q 045843 278 G-IHDEHKNGKVVFACIFRNI-C------GQ-------IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIIN 342 (913)
Q Consensus 278 ~-~~~~~~~s~iivTTR~~~v-~------~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~ 342 (913)
. ......+.++|+|++.... . .. ....+.+.+|+.+|+.+++.+.+.......... ..|++
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~ 237 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYE 237 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHH
Confidence 1 1122247889999997642 1 11 135799999999999999987542111112221 88999
Q ss_pred HhCCcHHHHHHHHHHhhcCCChHHHHH-HHHhhcCCCCCCCCchHHHHHHHH-Hhcc--CCchhHHHHhhhhccccCCcc
Q 045843 343 ECGGMPHMIKLIGSSLANVSNPAIWRD-MLSQLRSPSMAPKQELEEVYKSFK-LVCD--KLPSDKQLCLLYWAIFPVGYE 418 (913)
Q Consensus 343 ~c~GlPlai~~~~~~l~~~~~~~~w~~-~~~~l~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cfl~~a~fp~~~~ 418 (913)
.|+|.|+++..++..+....+...|-. +.+... ..+..-+. +.++ .+|+..+..+..+|. +.
T Consensus 238 ~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~- 303 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----------KLILKEFENFLHGREIARKRYLNIMRTLSK---CG- 303 (357)
T ss_dssp HHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB-
T ss_pred HhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----------HHHHHHHHHHhhccccccHHHHHHHHHHHc---CC-
Confidence 999999999999887653323333321 111100 11111122 2221 688889999998887 22
Q ss_pred ccHHHHHHHHH-hcCchhhhcchHHHHHHHHHHHHHHHHhcccccCCCccccc-hhHHHHHHH
Q 045843 419 LHEDYIIECWR-AEQFFACLRKLGEARDRGQSILDEFVKKSLLEKGRKASHYK-MFEHFQRAA 479 (913)
Q Consensus 419 i~~~~Li~~W~-a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~-mHdlv~~~a 479 (913)
+...+....- ..|. .........+++.|++.+++.... ..|+ -|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 3444432110 1120 001345678899999999998754 3465 578888763
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.5e-13 Score=144.81 Aligned_cols=98 Identities=31% Similarity=0.442 Sum_probs=62.0
Q ss_pred eeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCccCccccChh-hhccccCCEEecC
Q 045843 530 ILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCCQLMRLPAE-VGDLHNLEILDLS 607 (913)
Q Consensus 530 Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~lP~~-i~~L~~L~~L~L~ 607 (913)
+++++++++.++.+|..+ .+.|++|+|++|.++.+|. .+.++++|++|++++ +.+..+|.. +.++++|++|+++
T Consensus 18 ~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECC
Confidence 556666666666666533 2466777777777766653 566677777777766 455566554 3566777777777
Q ss_pred CCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 608 HTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 608 ~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
+|.+..+|... .++ +|++|++..+
T Consensus 94 ~n~l~~~~~~~~~~l~-------~L~~L~l~~n 119 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLV-------NLAELRLDRN 119 (270)
T ss_dssp SSCCCCCCTTTTTTCS-------SCCEEECCSS
T ss_pred CCcCCcCCHhHccccc-------CCCEEECCCC
Confidence 77666665544 555 6666666654
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=5.9e-15 Score=159.25 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=56.8
Q ss_pred ccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccCcc
Q 045843 774 SLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSL 853 (913)
Q Consensus 774 ~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~ 853 (913)
.+++|+.|+|++ +.+....+.+.+..+++|+.|++++|. ++.++. . .+++|+.|+++++ .++.++. ..
T Consensus 226 ~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~-----~--~~~~L~~L~Ls~N-~l~~~p~--~~ 293 (312)
T 1wwl_A 226 ARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK-----G--LPAKLSVLDLSYN-RLDRNPS--PD 293 (312)
T ss_dssp TTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS-----S--CCSEEEEEECCSS-CCCSCCC--TT
T ss_pred cCCCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCCCc-cChhhh-----h--ccCCceEEECCCC-CCCCChh--Hh
Confidence 467888888888 455554322445567888888888876 345542 2 2278999999887 5666644 66
Q ss_pred CCCCccEEeeecC
Q 045843 854 AWPLLETITIKAC 866 (913)
Q Consensus 854 ~~p~L~~L~i~~C 866 (913)
.+++|+.|+++++
T Consensus 294 ~l~~L~~L~L~~N 306 (312)
T 1wwl_A 294 ELPQVGNLSLKGN 306 (312)
T ss_dssp TSCEEEEEECTTC
T ss_pred hCCCCCEEeccCC
Confidence 7888999998885
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=1.1e-14 Score=172.45 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=85.8
Q ss_pred CcccCcceEEecccCCceEeecCCCcccccccCCceEecccc---cccchhccc---cccccccccccEEeeccCcc-cc
Q 045843 718 NKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHL---PKLMHIWKG---SIQSGSLIMLETLILKRCHG-MK 790 (913)
Q Consensus 718 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~---~~l~~~~~~---~~~~~~l~~L~~L~L~~c~~-l~ 790 (913)
..+++|++|.+. |+.+.......+.. .+++|+.|+++++ ..++..... +.....+++|+.|+|++|.+ +.
T Consensus 375 ~~~~~L~~L~l~-~~~l~~~~~~~l~~--~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 375 QGCQELEYMAVY-VSDITNESLESIGT--YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp HHCTTCSEEEEE-ESCCCHHHHHHHHH--HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred hhCccCeEEEee-cCCccHHHHHHHHh--hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence 346889999994 44431111111220 3788999999743 233321000 00013588999999988764 44
Q ss_pred ccCchHHHhhcCCCcEEEEccCchhH-hhhcCCcccCCCCCCccceeeccccccccc--ccccCccCCCCccEEeeecCc
Q 045843 791 TLFSEEIIFQLNQIQYLQVEDCKEME-EIIEAGSAVDSRAFPKLKSFQLINLPKLSS--ICHNMSLAWPLLETITIKACD 867 (913)
Q Consensus 791 ~l~~~~~l~~l~~L~~L~l~~~~~l~-~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~--i~~~~~~~~p~L~~L~i~~C~ 867 (913)
+.........+++|+.|++++|.... .++. ....+++|++|++++|+ ++. ++. ....+|+|+.|++++|+
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----~~~~~~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLME-----FSRGCPNLQKLEMRGCC-FSERAIAA-AVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCCSSHHHHHH-----HHTCCTTCCEEEEESCC-CBHHHHHH-HHHHCSSCCEEEEESCB
T ss_pred HHHHHHHHHhCccceEeeccCCCCCHHHHHH-----HHhcCcccCeeeccCCC-CcHHHHHH-HHHhcCccCeeECcCCc
Confidence 33111223448999999999887433 2221 34578999999999997 442 222 33468999999999996
Q ss_pred cccc
Q 045843 868 ELRN 871 (913)
Q Consensus 868 ~L~~ 871 (913)
++.
T Consensus 525 -it~ 527 (592)
T 3ogk_B 525 -ASM 527 (592)
T ss_dssp -CCT
T ss_pred -CCH
Confidence 543
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=8.4e-14 Score=146.93 Aligned_cols=128 Identities=27% Similarity=0.344 Sum_probs=110.2
Q ss_pred CHHhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcce
Q 045843 501 SEEEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKA 579 (913)
Q Consensus 501 ~~~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~ 579 (913)
......+++.+.+.++.+..++....+++|++|++++|.+..++ .|..+++|++|++++|.++.+|.. ++++.+|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 45567789999999999998888888999999999999988875 368999999999999999988754 789999999
Q ss_pred eecCCccCccccChh-hhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 580 LFLNNCCQLMRLPAE-VGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 580 L~L~~c~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
|++++ +.+..+|.. ++++++|++|++++|.+..+|... .++ +|+.|++..+
T Consensus 114 L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~l~~n 167 (272)
T 3rfs_A 114 LVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-------NLTELDLSYN 167 (272)
T ss_dssp EECTT-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------TCCEEECCSS
T ss_pred EECCC-CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-------cCCEEECCCC
Confidence 99999 567776655 799999999999999998777654 677 8888887766
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=1.8e-13 Score=145.63 Aligned_cols=123 Identities=24% Similarity=0.197 Sum_probs=106.4
Q ss_pred hhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCc
Q 045843 506 EVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNC 585 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c 585 (913)
.+++.+.+.++.+..+|... .++++.|++++|.+..+++..|..+++|++|+|++|.++.+|.. +.+++|++|++++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~- 86 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH- 86 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS-
T ss_pred CCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC-
Confidence 46788888889998888653 37899999999999988888889999999999999999988764 8899999999999
Q ss_pred cCccccChhhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 586 CQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 586 ~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
+.+..+|..+..+++|++|++++|.+..+|... .++ +|++|++..+
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-------~L~~L~L~~N 134 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-------ELQELYLKGN 134 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-------TCCEEECTTS
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-------CCCEEECCCC
Confidence 688899998999999999999999998887654 777 8888888766
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=1.4e-13 Score=148.08 Aligned_cols=126 Identities=19% Similarity=0.281 Sum_probs=110.5
Q ss_pred CHHhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCccee
Q 045843 501 SEEEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKAL 580 (913)
Q Consensus 501 ~~~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L 580 (913)
......+++.|++.++.+..++....+++|++|++++|.+..+++ |..+++|++|++++|.++.+| .+.++.+|++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 345678999999999999999877889999999999999999888 799999999999999999887 59999999999
Q ss_pred ecCCccCccccChhhhccccCCEEecCCCcCCcCCCccccccccccccccceeecccc
Q 045843 581 FLNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 581 ~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~ 638 (913)
++++ +.+..+|. ++.+++|++|++++|.+..+|.--.++ +|++|++..+
T Consensus 113 ~l~~-n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~-------~L~~L~l~~n 161 (308)
T 1h6u_A 113 DLTS-TQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLT-------NLQYLSIGNA 161 (308)
T ss_dssp ECTT-SCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCT-------TCCEEECCSS
T ss_pred ECCC-CCCCCchh-hcCCCCCCEEECCCCccCcCccccCCC-------CccEEEccCC
Confidence 9999 57888875 999999999999999997776522666 8888887765
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=2.2e-13 Score=144.97 Aligned_cols=198 Identities=22% Similarity=0.294 Sum_probs=135.5
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceeecCCccCccccChhhhccccCCE
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEI 603 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~ 603 (913)
..++++++++++++.++.+|..+ .+.|++|+|++|.++.+ |..+.++++|++|+|++ +.+..+|.. +.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCC-CCCCcCCE
Confidence 35678999999999999999865 37899999999999976 46799999999999999 678888764 88999999
Q ss_pred EecCCCcCCcCCCcc-ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeec
Q 045843 604 LDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFA 682 (913)
Q Consensus 604 L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~ 682 (913)
|++++|.+..+|..+ .++ +|++|++..+.
T Consensus 82 L~Ls~N~l~~l~~~~~~l~-------~L~~L~l~~N~------------------------------------------- 111 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLP-------ALTVLDVSFNR------------------------------------------- 111 (290)
T ss_dssp EECCSSCCSSCCCCTTTCT-------TCCEEECCSSC-------------------------------------------
T ss_pred EECCCCcCCcCchhhccCC-------CCCEEECCCCc-------------------------------------------
Confidence 999999998888876 777 88888877651
Q ss_pred CCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEeccccccc
Q 045843 683 DGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKL 762 (913)
Q Consensus 683 ~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l 762 (913)
+..++ ...+..+++|+.|+++++... .++...+. .+++|+.|++++.. +
T Consensus 112 -l~~l~-------------------------~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~---~l~~L~~L~L~~N~-l 160 (290)
T 1p9a_G 112 -LTSLP-------------------------LGALRGLGELQELYLKGNELK-TLPPGLLT---PTPKLEKLSLANNN-L 160 (290)
T ss_dssp -CCCCC-------------------------SSTTTTCTTCCEEECTTSCCC-CCCTTTTT---TCTTCCEEECTTSC-C
T ss_pred -CcccC-------------------------HHHHcCCCCCCEEECCCCCCC-ccChhhcc---cccCCCEEECCCCc-C
Confidence 11111 111355667777777764322 33333333 46667777775422 1
Q ss_pred chhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCc
Q 045843 763 MHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCK 813 (913)
Q Consensus 763 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~ 813 (913)
.....+ ....+++|+.|+|++ +.++.+ | ..+..+++|+.|++++|+
T Consensus 161 ~~l~~~--~~~~l~~L~~L~L~~-N~l~~i-p-~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 161 TELPAG--LLNGLENLDTLLLQE-NSLYTI-P-KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp SCCCTT--TTTTCTTCCEEECCS-SCCCCC-C-TTTTTTCCCSEEECCSCC
T ss_pred CccCHH--HhcCcCCCCEEECCC-CcCCcc-C-hhhcccccCCeEEeCCCC
Confidence 111100 112467777777777 455555 2 445566677777777654
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.47 E-value=4.3e-14 Score=167.31 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=103.2
Q ss_pred CcccCcceEEecc----------cCCceEe-ecCCCcccccccCCceEecccccccchhccccccccccccccEEeecc-
Q 045843 718 NKFGDVEACIVED----------CNEMISI-IDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKR- 785 (913)
Q Consensus 718 ~~l~~L~~L~l~~----------~~~~~~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~- 785 (913)
..+++|++|++++ |+.+... +..... .+++|++|++ ++..+........ ...+++|+.|+|++
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~---~~~~L~~L~l-~~~~l~~~~~~~l-~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ---GCQELEYMAV-YVSDITNESLESI-GTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH---HCTTCSEEEE-EESCCCHHHHHHH-HHHCCSCCEEEEEEC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHh---hCccCeEEEe-ecCCccHHHHHHH-HhhCCCCcEEEEeec
Confidence 4567899999984 5554211 100012 4789999999 3334332111000 02488999999984
Q ss_pred --CccccccCc----hHHHhhcCCCcEEEEccCch-hH-hhhcCCcccCCCCCCccceeeccccccccc--ccccCccCC
Q 045843 786 --CHGMKTLFS----EEIIFQLNQIQYLQVEDCKE-ME-EIIEAGSAVDSRAFPKLKSFQLINLPKLSS--ICHNMSLAW 855 (913)
Q Consensus 786 --c~~l~~l~~----~~~l~~l~~L~~L~l~~~~~-l~-~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~--i~~~~~~~~ 855 (913)
|+.+++... ...+.++++|+.|++++|.. +. ..+. .-...+++|+.|++++|. ++. ++. ....+
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~----~~~~~~~~L~~L~L~~n~-l~~~~~~~-~~~~~ 487 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS----YIGQYSPNVRWMLLGYVG-ESDEGLME-FSRGC 487 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH----HHHHSCTTCCEEEECSCC-SSHHHHHH-HHTCC
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH----HHHHhCccceEeeccCCC-CCHHHHHH-HHhcC
Confidence 567776310 13467899999999987663 21 1111 012357899999999885 433 222 34568
Q ss_pred CCccEEeeecCccccc--ccCCCcCCCCcceeeecccccc
Q 045843 856 PLLETITIKACDELRN--FPSTIENASKLRGIQCNQAWWS 893 (913)
Q Consensus 856 p~L~~L~i~~C~~L~~--lP~~~~~l~~L~~l~~~~~~~~ 893 (913)
++|++|+|++|+ ++. +|.....+++|+.+++..+...
T Consensus 488 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 488 PNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp TTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred cccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 999999999998 443 4444457899999999887654
No 91
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.46 E-value=3.8e-13 Score=119.30 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=72.2
Q ss_pred cccchhhcccchhhHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cccchhHHHHHHHHHHHHHH
Q 045843 15 SLVGPAVEGGTGILHCLKRKYLYVKNMSKNLRNLEREEKYLCDEEADVKTRLERNKLK--MEKSRRCETWLNEVERMKDE 92 (913)
Q Consensus 15 ~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~l~~a~~~--~~~~~~~~~wl~~l~~~~~~ 92 (913)
|+|+.+++ +|.+++.+|+.++.|+++++++|++||+.|+++|.+ |+.+ +..+++++.|+++||+++||
T Consensus 1 a~v~~ll~---KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD 70 (115)
T 3qfl_A 1 AAISNLIP---KLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYV 70 (115)
T ss_dssp CTTCSHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHH---HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHH
Confidence 46777777 999999999999999999999999999999999665 4455 44789999999999999999
Q ss_pred HHHHHHhhhhccc
Q 045843 93 IETLKSSYSSTHK 105 (913)
Q Consensus 93 ~ed~ld~~~~~~~ 105 (913)
+||+||+|.++..
T Consensus 71 ~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 71 IEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.45 E-value=3.1e-15 Score=171.29 Aligned_cols=346 Identities=16% Similarity=0.101 Sum_probs=194.6
Q ss_pred hhhceeeeccccccCCCC---CCCCCceeEEeeccCccccC----chHHHhcCCcccEEeccCCcccc-cCccc-cCcc-
Q 045843 506 EVANRISLIRMCLSTLPK---RPKCCRILTLLLQESSLAEL----PASFFGYMCSLQLLDLHDTKIKL-LPSSI-SSLT- 575 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~---~~~~~~Lr~L~l~~~~l~~l----~~~~f~~l~~Lr~LdLs~~~i~~-lp~~i-~~L~- 575 (913)
++++.|++.++.+...+. ...+++|++|++++|.+... .+..|..+++|++|+|++|.+.. .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 356778888777654321 25678999999999987632 12345788999999999999874 23222 3455
Q ss_pred ---CcceeecCCccCcc-----ccChhhhccccCCEEecCCCcCCcC-CCcc------ccccccccccccceeecccccc
Q 045843 576 ---NLKALFLNNCCQLM-----RLPAEVGDLHNLEILDLSHTGICCL-PSEI------DLTTLCFYFPNVGLLQNFINAS 640 (913)
Q Consensus 576 ---~L~~L~L~~c~~l~-----~lP~~i~~L~~L~~L~L~~~~~~~l-p~~i------~L~~L~~~~~~L~~L~l~~~~~ 640 (913)
+|++|+|++| .+. .+|..+.++++|++|++++|.+... +..+ ..+ +|++|++..+..
T Consensus 83 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-------~L~~L~L~~n~l 154 (461)
T 1z7x_W 83 PSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC-------RLEKLQLEYCSL 154 (461)
T ss_dssp TTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC-------CCCEEECTTSCC
T ss_pred CCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC-------cceEEECCCCCC
Confidence 6999999995 455 5688899999999999999987321 2211 233 688998887732
Q ss_pred cccCCCCCccceeeeeccccCCCCCccccccCCccccceeecCCCCCchhhHHHhc--------ccccccccccccccc-
Q 045843 641 KSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILE--------QACAFELIGHRTAAN- 711 (913)
Q Consensus 641 ~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~--------i~~~l~l~~~~~~~~- 711 (913)
.... ...+ .-.+..++.+..+.+..-. +.+.....+. -...+.+.++ .+..
T Consensus 155 ~~~~----~~~l--------------~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~ 214 (461)
T 1z7x_W 155 SAAS----CEPL--------------ASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSD 214 (461)
T ss_dssp BGGG----HHHH--------------HHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTT
T ss_pred CHHH----HHHH--------------HHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHH
Confidence 2100 0000 0000001111111221110 1101111110 1111222222 1211
Q ss_pred ----cCccccCcccCcceEEecccCCceEee----cCCCcccccccCCceEecccccccchhccc--cccccccccccEE
Q 045843 712 ----LSDFGANKFGDVEACIVEDCNEMISII----DGNLTEGVTFQHLKKLHISHLPKLMHIWKG--SIQSGSLIMLETL 781 (913)
Q Consensus 712 ----l~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~l~~L~~L 781 (913)
++.. +..+++|++|++++|......+ ..... .+++|++|+++++ .+...... +.....+++|+.|
T Consensus 215 ~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~---~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 215 NCRDLCGI-VASKASLRELALGSNKLGDVGMAELCPGLLH---PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp HHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHTS---TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHH-HHhCCCccEEeccCCcCChHHHHHHHHHHhc---CCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceE
Confidence 2222 3456788888888753221000 10011 3678888888765 23221000 0011246788888
Q ss_pred eeccCccccccCchHHHhh-----cCCCcEEEEccCchhHh----hhcCCcccCCCCCCccceeecccccccccccccCc
Q 045843 782 ILKRCHGMKTLFSEEIIFQ-----LNQIQYLQVEDCKEMEE----IIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMS 852 (913)
Q Consensus 782 ~L~~c~~l~~l~~~~~l~~-----l~~L~~L~l~~~~~l~~----i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~ 852 (913)
+|++| .+.+. ....+.. .++|+.|++++|..... ++. ....+++|+.|+++++. +........
T Consensus 290 ~Ls~n-~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-----~l~~~~~L~~L~Ls~n~-i~~~~~~~l 361 (461)
T 1z7x_W 290 SLAGN-ELGDE-GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS-----VLAQNRFLLELQISNNR-LEDAGVREL 361 (461)
T ss_dssp ECTTC-CCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-----HHHHCSSCCEEECCSSB-CHHHHHHHH
T ss_pred ECCCC-CCchH-HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH-----HHhhCCCccEEEccCCc-cccccHHHH
Confidence 88885 44433 1122322 26888888888763322 221 34456899999999883 443221111
Q ss_pred -----cCCCCccEEeeecCcccc-----cccCCCcCCCCcceeeecccccc
Q 045843 853 -----LAWPLLETITIKACDELR-----NFPSTIENASKLRGIQCNQAWWS 893 (913)
Q Consensus 853 -----~~~p~L~~L~i~~C~~L~-----~lP~~~~~l~~L~~l~~~~~~~~ 893 (913)
...++|+.|++++| .++ .+|..+..+++|+++++..+-+.
T Consensus 362 ~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 362 CQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 12689999999998 566 78887888899999999887554
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.45 E-value=4.9e-13 Score=141.49 Aligned_cols=125 Identities=23% Similarity=0.255 Sum_probs=109.7
Q ss_pred hhhceeeeccccccCCCC--CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeec
Q 045843 506 EVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFL 582 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L 582 (913)
.+++.|++.+|.+..++. ...+++|++|++++|.+..+++..|..+++|++|+|++|.++.++ ..+.++.+|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 579999999999988875 378999999999999999998888899999999999999999776 67999999999999
Q ss_pred CCccCccccCh-hhhccccCCEEecCCCcCCc--CCCcc-ccccccccccccceeecccc
Q 045843 583 NNCCQLMRLPA-EVGDLHNLEILDLSHTGICC--LPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 583 ~~c~~l~~lP~-~i~~L~~L~~L~L~~~~~~~--lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
++ +.+..++. .++++++|++|++++|.+.. +|..+ .++ +|++|++..+
T Consensus 108 ~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-------~L~~L~Ls~N 159 (276)
T 2z62_A 108 VE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-------NLEHLDLSSN 159 (276)
T ss_dssp TT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-------TCCEEECCSS
T ss_pred CC-CCccccCchhcccCCCCCEEECcCCccceecCchhhccCC-------CCCEEECCCC
Confidence 99 56666655 69999999999999999955 67666 788 9999988876
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=2.1e-12 Score=134.42 Aligned_cols=123 Identities=28% Similarity=0.314 Sum_probs=99.9
Q ss_pred hhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCc
Q 045843 507 VANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNC 585 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c 585 (913)
..+.+++.++.+..+|.... ++++.|++++|.+..+++..|.++++|++|+|++|.++.++. .+.++.+|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~- 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN- 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC-
Confidence 45678888888888886533 689999999999888888778899999999999999987654 578899999999999
Q ss_pred cCccccCh-hhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 586 CQLMRLPA-EVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 586 ~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
+.+..+|. .++.+++|++|++++|.+..+|... .++ +|++|++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~Ls~N 141 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-------KLKELRLNTN 141 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------TCCEEECCSS
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC-------cccEEECcCC
Confidence 56676664 4788999999999999887777764 677 7888877655
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=5.6e-14 Score=153.43 Aligned_cols=251 Identities=14% Similarity=0.147 Sum_probs=166.9
Q ss_pred CcccEEeccCCcccccCccccCc--cCcceeecCCccCccccChhhhccccCCEEecCCCcCCc--CCCcc-cccccccc
Q 045843 552 CSLQLLDLHDTKIKLLPSSISSL--TNLKALFLNNCCQLMRLPAEVGDLHNLEILDLSHTGICC--LPSEI-DLTTLCFY 626 (913)
Q Consensus 552 ~~Lr~LdLs~~~i~~lp~~i~~L--~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~--lp~~i-~L~~L~~~ 626 (913)
..++.|+++++.+. |..+..+ .++++|++++ +.+...+..+.++++|++|++++|.+.. +|..+ .++
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~-n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~----- 118 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPR-SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS----- 118 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTT-CEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC-----
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCC-ccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC-----
Confidence 45788999988876 5556777 8899999998 5666666667889999999999988732 44444 555
Q ss_pred ccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecCCCCCchhhHHHhccccccccccc
Q 045843 627 FPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGH 706 (913)
Q Consensus 627 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~ 706 (913)
+|++|++..+. +.+....
T Consensus 119 --~L~~L~L~~~~-----------------------------------------------l~~~~~~------------- 136 (336)
T 2ast_B 119 --KLQNLSLEGLR-----------------------------------------------LSDPIVN------------- 136 (336)
T ss_dssp --CCSEEECTTCB-----------------------------------------------CCHHHHH-------------
T ss_pred --CCCEEeCcCcc-----------------------------------------------cCHHHHH-------------
Confidence 78888776551 0000010
Q ss_pred ccccccCccccCcccCcceEEecccCCceE-eecCCCcccccccCCceEecccccccchhccccccccccc-cccEEeec
Q 045843 707 RTAANLSDFGANKFGDVEACIVEDCNEMIS-IIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLI-MLETLILK 784 (913)
Q Consensus 707 ~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~-~L~~L~L~ 784 (913)
.+..+++|++|++++|..+.. .+...+. .+++|++|+++++..+..... +.....++ +|++|+|+
T Consensus 137 ---------~l~~~~~L~~L~L~~~~~l~~~~l~~~~~---~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 137 ---------TLAKNSNLVRLNLSGCSGFSEFALQTLLS---SCSRLDELNLSWCFDFTEKHV-QVAVAHVSETITQLNLS 203 (336)
T ss_dssp ---------HHTTCTTCSEEECTTCBSCCHHHHHHHHH---HCTTCCEEECCCCTTCCHHHH-HHHHHHSCTTCCEEECC
T ss_pred ---------HHhcCCCCCEEECCCCCCCCHHHHHHHHh---cCCCCCEEcCCCCCCcChHHH-HHHHHhcccCCCEEEeC
Confidence 024578999999999855422 1222133 689999999988755542210 11123688 99999999
Q ss_pred cCc-cccccCchHHHhhcCCCcEEEEccCchhH-hhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEe
Q 045843 785 RCH-GMKTLFSEEIIFQLNQIQYLQVEDCKEME-EIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETIT 862 (913)
Q Consensus 785 ~c~-~l~~l~~~~~l~~l~~L~~L~l~~~~~l~-~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~ 862 (913)
+|. .+.+-.-+..+.++++|+.|++++|..++ ..+. ....+++|+.|++++|..+..........+|+|+.|+
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-----EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-----GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-----HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 986 45422113567899999999999998543 3332 5567899999999999754432221356799999999
Q ss_pred eecCcccccccCC-CcCC-CCcceeeecccccccC
Q 045843 863 IKACDELRNFPST-IENA-SKLRGIQCNQAWWSSL 895 (913)
Q Consensus 863 i~~C~~L~~lP~~-~~~l-~~L~~l~~~~~~~~~l 895 (913)
+++| +|.. +..+ ..|..+++..+.+.+.
T Consensus 279 l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 279 VFGI-----VPDGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp CTTS-----SCTTCHHHHHHHSTTSEESCCCSCCT
T ss_pred ccCc-----cCHHHHHHHHhhCcceEEecccCccc
Confidence 9998 4442 3333 2355566665544443
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=3.2e-14 Score=168.47 Aligned_cols=366 Identities=13% Similarity=0.055 Sum_probs=176.5
Q ss_pred hhhceeeeccccccCCC--CC-CCCCceeEEeeccC-ccccC-chHHHhcCCcccEEeccCCcccc-----cCccccCcc
Q 045843 506 EVANRISLIRMCLSTLP--KR-PKCCRILTLLLQES-SLAEL-PASFFGYMCSLQLLDLHDTKIKL-----LPSSISSLT 575 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~--~~-~~~~~Lr~L~l~~~-~l~~l-~~~~f~~l~~Lr~LdLs~~~i~~-----lp~~i~~L~ 575 (913)
+++++|.+.++.+.... .. ..+++|++|++++| .+... .+.++..+++|++|+|++|.++. ++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 46777777776543211 11 24778888888888 44431 23444678888999988887653 334444677
Q ss_pred CcceeecCCcc-Cc--cccChhhhccccCCEEecCCCcC-CcCCCcc-ccccccccccccceeeccccccc-------cc
Q 045843 576 NLKALFLNNCC-QL--MRLPAEVGDLHNLEILDLSHTGI-CCLPSEI-DLTTLCFYFPNVGLLQNFINASK-------SW 643 (913)
Q Consensus 576 ~L~~L~L~~c~-~l--~~lP~~i~~L~~L~~L~L~~~~~-~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~-------~~ 643 (913)
+|++|++++|. .+ ..++.-+.++++|++|++++|.. ..+|..+ .++ +|++|.+..+... ..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP-------QLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT-------TCSEEECSBCCCCCCHHHHHHH
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC-------cceEcccccccCccchhhHHHH
Confidence 88888888864 12 12333345678888888888843 4444444 555 7777765443110 00
Q ss_pred -CCCCCccceeeeeccccCCCCCccccccCCccccceeecCCCCCchhhHHH----hcccccccccccccccccCccccC
Q 045843 644 -NGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKI----LEQACAFELIGHRTAANLSDFGAN 718 (913)
Q Consensus 644 -~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~----L~i~~~l~l~~~~~~~~l~~~~~~ 718 (913)
..+.+.+.|..+.+........+......|+++..+.+.... +.+..+.. +.-...+.+.++.....+... ..
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l-~~ 335 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL-AS 335 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH-HH
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHH-HH
Confidence 000111112221111111000010001112222333332221 21111111 000011111111000001111 12
Q ss_pred cccCcceEEeccc--------CCceEeecCCCcccccccCCceEecccccccchhccccccccccccccEEeec-----c
Q 045843 719 KFGDVEACIVEDC--------NEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILK-----R 785 (913)
Q Consensus 719 ~l~~L~~L~l~~~--------~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~-----~ 785 (913)
.+++|++|++.+| +.+....-..+.. .+++|++|.+ ++..+........ ...+++|+.|+|+ +
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~--~~~~L~~L~~-~~~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM--GCPKLESVLY-FCRQMTNAALITI-ARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH--HCTTCCEEEE-EESCCCHHHHHHH-HHHCTTCCEEEEEESSTTC
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHH--hchhHHHHHH-hcCCcCHHHHHHH-HhhCCCcceeEeecccCCC
Confidence 3456666666332 1110000000110 3567777744 2333321110000 0247788888888 5
Q ss_pred CccccccCc----hHHHhhcCCCcEEEEccCchhHhhhcCCcccCC-CCCCccceeeccccccccccccc-CccCCCCcc
Q 045843 786 CHGMKTLFS----EEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDS-RAFPKLKSFQLINLPKLSSICHN-MSLAWPLLE 859 (913)
Q Consensus 786 c~~l~~l~~----~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~-~~f~~L~~L~l~~~~~l~~i~~~-~~~~~p~L~ 859 (913)
|+.+++... ...+.++++|+.|+++++- ....+. .. ..+++|+.|++++|. ++..... ....+|+|+
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l-~~~~~~-----~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~ 484 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL-TDKVFE-----YIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLR 484 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECCSSC-CHHHHH-----HHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCC
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeecCcc-cHHHHH-----HHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcC
Confidence 666663310 1235677888888886621 111111 11 137889999998885 3221110 124589999
Q ss_pred EEeeecCcccccc-c-CCCcCCCCcceeeeccccc
Q 045843 860 TITIKACDELRNF-P-STIENASKLRGIQCNQAWW 892 (913)
Q Consensus 860 ~L~i~~C~~L~~l-P-~~~~~l~~L~~l~~~~~~~ 892 (913)
.|++++|+. +.. + .....+++|+.+++..+..
T Consensus 485 ~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 485 KLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred EEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 999999976 332 2 2344688999999877543
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=6.6e-13 Score=141.35 Aligned_cols=119 Identities=21% Similarity=0.296 Sum_probs=78.6
Q ss_pred hceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccC
Q 045843 508 ANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQ 587 (913)
Q Consensus 508 ~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~ 587 (913)
+.++.+..+.+..+.....+++|+.|++++|.+..++. +..+++|++|++++|.++.++. ++++++|++|++++ +.
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~-n~ 101 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NK 101 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SC
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC-Cc
Confidence 33334444444444334556777888888777777654 5777888888888888877766 77888888888887 46
Q ss_pred ccccChhhhccccCCEEecCCCcCCcCCCccccccccccccccceeecccc
Q 045843 588 LMRLPAEVGDLHNLEILDLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 588 l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~ 638 (913)
+..+|. ++++++|++|++++|.+..+|.-..++ +|+.|++..+
T Consensus 102 l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~-------~L~~L~l~~n 144 (291)
T 1h6t_A 102 VKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLP-------QLESLYLGNN 144 (291)
T ss_dssp CCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCT-------TCCEEECCSS
T ss_pred CCCChh-hccCCCCCEEECCCCcCCCChhhcCCC-------CCCEEEccCC
Confidence 666654 777888888888887775553211445 5666655543
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=2e-13 Score=152.07 Aligned_cols=133 Identities=10% Similarity=0.029 Sum_probs=70.9
Q ss_pred cCcceEEecccCCceEeec---CCCcccccccCCceEecccccccchhc---cccccccccccccEEeeccCccc-----
Q 045843 721 GDVEACIVEDCNEMISIID---GNLTEGVTFQHLKKLHISHLPKLMHIW---KGSIQSGSLIMLETLILKRCHGM----- 789 (913)
Q Consensus 721 ~~L~~L~l~~~~~~~~~~~---~~l~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~l~~L~~L~L~~c~~l----- 789 (913)
++|++|++++|......+. ..+. .+++|++|+++++. +.... ..+.....+++|+.|+|++|. +
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~---~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~ 233 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQ---SHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGS 233 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHH---HCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHH---hCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHH
Confidence 5666777766432101111 1122 45677777775542 11100 000012356778888887754 4
Q ss_pred cccCchHHHhhcCCCcEEEEccCchhHh----hhcCCcccCC--CCCCccceeeccccccccc-----ccccCc-cCCCC
Q 045843 790 KTLFSEEIIFQLNQIQYLQVEDCKEMEE----IIEAGSAVDS--RAFPKLKSFQLINLPKLSS-----ICHNMS-LAWPL 857 (913)
Q Consensus 790 ~~l~~~~~l~~l~~L~~L~l~~~~~l~~----i~~~~~~~~~--~~f~~L~~L~l~~~~~l~~-----i~~~~~-~~~p~ 857 (913)
..+ +..+..+++|+.|++++|..... ++. .. ..+++|+.|+|++|. +.. ++. .. ..+|+
T Consensus 234 ~~l--~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-----~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-~l~~~l~~ 304 (386)
T 2ca6_A 234 SAL--AIALKSWPNLRELGLNDCLLSARGAAAVVD-----AFSKLENIGLQTLRLQYNE-IELDAVRTLKT-VIDEKMPD 304 (386)
T ss_dssp HHH--HHHGGGCTTCCEEECTTCCCCHHHHHHHHH-----HHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-HHHHHCTT
T ss_pred HHH--HHHHccCCCcCEEECCCCCCchhhHHHHHH-----HHhhccCCCeEEEECcCCc-CCHHHHHHHHH-HHHhcCCC
Confidence 222 24566777888888877764332 221 22 336778888887774 333 443 22 44688
Q ss_pred ccEEeeecCc
Q 045843 858 LETITIKACD 867 (913)
Q Consensus 858 L~~L~i~~C~ 867 (913)
|+.|++++|+
T Consensus 305 L~~L~l~~N~ 314 (386)
T 2ca6_A 305 LLFLELNGNR 314 (386)
T ss_dssp CCEEECTTSB
T ss_pred ceEEEccCCc
Confidence 8888888764
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=8.5e-13 Score=154.30 Aligned_cols=101 Identities=22% Similarity=0.351 Sum_probs=57.0
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCc
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQL 588 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l 588 (913)
.++.+..+.+..+.....+++|+.|++++|.+..++. |..+++|+.|+|++|.+..+|. ++++.+|++|+|++ +.+
T Consensus 24 ~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~l 99 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE-NKI 99 (605)
T ss_dssp HHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS-SCC
T ss_pred HHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC-CCC
Confidence 3333444444433333445566666666665555543 4566666666666666665554 66666666666666 345
Q ss_pred cccChhhhccccCCEEecCCCcCCcC
Q 045843 589 MRLPAEVGDLHNLEILDLSHTGICCL 614 (913)
Q Consensus 589 ~~lP~~i~~L~~L~~L~L~~~~~~~l 614 (913)
..+| .++.|++|++|+|++|.+..+
T Consensus 100 ~~l~-~l~~l~~L~~L~Ls~N~l~~l 124 (605)
T 1m9s_A 100 KDLS-SLKDLKKLKSLSLEHNGISDI 124 (605)
T ss_dssp CCCT-TSTTCTTCCEEECTTSCCCCC
T ss_pred CCCh-hhccCCCCCEEEecCCCCCCC
Confidence 5554 466666666666666665444
No 100
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.35 E-value=1.3e-13 Score=163.14 Aligned_cols=139 Identities=10% Similarity=0.055 Sum_probs=76.0
Q ss_pred cccCcceEEecccCCceEeecCCCcccccccCCceEecc-----cccccchhccc-c--ccccccccccEEeeccCcccc
Q 045843 719 KFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHIS-----HLPKLMHIWKG-S--IQSGSLIMLETLILKRCHGMK 790 (913)
Q Consensus 719 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~-----~~~~l~~~~~~-~--~~~~~l~~L~~L~L~~c~~l~ 790 (913)
.+++|++|.+. |+.+.......+.. .+++|+.|++. ++..++..... . .-...+++|+.|+|++ .+.
T Consensus 370 ~~~~L~~L~~~-~~~l~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~ 444 (594)
T 2p1m_B 370 GCPKLESVLYF-CRQMTNAALITIAR--NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLT 444 (594)
T ss_dssp HCTTCCEEEEE-ESCCCHHHHHHHHH--HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCC
T ss_pred hchhHHHHHHh-cCCcCHHHHHHHHh--hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--ccc
Confidence 35778888554 33331111100110 36788888887 34444311000 0 0013577888888865 444
Q ss_pred ccCchHHHhh-cCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeeccccccccccccc-CccCCCCccEEeeecCcc
Q 045843 791 TLFSEEIIFQ-LNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHN-MSLAWPLLETITIKACDE 868 (913)
Q Consensus 791 ~l~~~~~l~~-l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~-~~~~~p~L~~L~i~~C~~ 868 (913)
+. ....+.. +++|+.|++++|......+. .-...+++|+.|++++|+. +..... ....+|+|+.|++++|+.
T Consensus 445 ~~-~~~~l~~~~~~L~~L~L~~~~i~~~~~~----~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 445 DK-VFEYIGTYAKKMEMLSVAFAGDSDLGMH----HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HH-HHHHHHHHCTTCCEEEEESCCSSHHHHH----HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HH-HHHHHHHhchhccEeeccCCCCcHHHHH----HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 43 1234444 78888888888764332221 0114578888888888875 322111 234578888888888865
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=4.3e-13 Score=149.45 Aligned_cols=242 Identities=14% Similarity=0.094 Sum_probs=134.4
Q ss_pred CCCCceeEEeeccCccccCchH----HHhcCCcccEEeccCCccc----ccCccc-------cCccCcceeecCCccCcc
Q 045843 525 PKCCRILTLLLQESSLAELPAS----FFGYMCSLQLLDLHDTKIK----LLPSSI-------SSLTNLKALFLNNCCQLM 589 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~----~f~~l~~Lr~LdLs~~~i~----~lp~~i-------~~L~~L~~L~L~~c~~l~ 589 (913)
..+++|++|++++|.+...... .|..+++|++|+|++|.+. .+|..+ .++++|++|+|++| .+.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFG 107 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCC
Confidence 4567788888888876653322 2467888888888887554 334333 67888888888884 454
Q ss_pred c-----cChhhhccccCCEEecCCCcCCcC-CCcc-----ccc--cccccccccceeecccccccccCCCCCccceeeee
Q 045843 590 R-----LPAEVGDLHNLEILDLSHTGICCL-PSEI-----DLT--TLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILV 656 (913)
Q Consensus 590 ~-----lP~~i~~L~~L~~L~L~~~~~~~l-p~~i-----~L~--~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~ 656 (913)
. +|..+.++++|++|++++|.+... +..+ .+. .+....++|++|++..+...
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~--------------- 172 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE--------------- 172 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT---------------
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC---------------
Confidence 4 777888888888888888877322 1111 220 00000026666666554100
Q ss_pred ccccCCCCCccccccCCccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceE
Q 045843 657 GYNQRSSPHMEFDFSGCSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMIS 736 (913)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~ 736 (913)
+..+..+. . .+..+++|++|.+++|.....
T Consensus 173 --------------------------------~~~~~~l~-----------------~-~l~~~~~L~~L~L~~n~l~~~ 202 (386)
T 2ca6_A 173 --------------------------------NGSMKEWA-----------------K-TFQSHRLLHTVKMVQNGIRPE 202 (386)
T ss_dssp --------------------------------GGGHHHHH-----------------H-HHHHCTTCCEEECCSSCCCHH
T ss_pred --------------------------------cHHHHHHH-----------------H-HHHhCCCcCEEECcCCCCCHh
Confidence 00011000 0 023455777777776532100
Q ss_pred ----eecCCCcccccccCCceEecccccccchhccc--cccccccccccEEeeccCccccccCc---hHHHhh--cCCCc
Q 045843 737 ----IIDGNLTEGVTFQHLKKLHISHLPKLMHIWKG--SIQSGSLIMLETLILKRCHGMKTLFS---EEIIFQ--LNQIQ 805 (913)
Q Consensus 737 ----~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~l~~L~~L~L~~c~~l~~l~~---~~~l~~--l~~L~ 805 (913)
+.+..+. .+++|+.|+++++. +...... +.....+++|+.|+|++|. +.+... +..+.. +++|+
T Consensus 203 g~~~l~~~~l~---~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~ 277 (386)
T 2ca6_A 203 GIEHLLLEGLA---YCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQ 277 (386)
T ss_dssp HHHHHHHTTGG---GCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCC
T ss_pred HHHHHHHHHhh---cCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeE
Confidence 1221233 56778888776543 2100000 0111357788888888854 433200 133422 78888
Q ss_pred EEEEccCchhH----hhhcCCcccCC-CCCCccceeeccccc
Q 045843 806 YLQVEDCKEME----EIIEAGSAVDS-RAFPKLKSFQLINLP 842 (913)
Q Consensus 806 ~L~l~~~~~l~----~i~~~~~~~~~-~~f~~L~~L~l~~~~ 842 (913)
.|++++|.... .++. .. ..+|+|+.|++++|+
T Consensus 278 ~L~L~~n~i~~~g~~~l~~-----~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 278 TLRLQYNEIELDAVRTLKT-----VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp EEECCSSCCBHHHHHHHHH-----HHHHHCTTCCEEECTTSB
T ss_pred EEECcCCcCCHHHHHHHHH-----HHHhcCCCceEEEccCCc
Confidence 88888876544 2442 33 346888888888875
No 102
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=6.6e-11 Score=131.59 Aligned_cols=284 Identities=14% Similarity=0.103 Sum_probs=178.9
Q ss_pred ccccchHHHHHHHHHHHh----cCCCcEEEEECCCCCcHHHHHHHHHHHhccc----CC--CceEEEEEeCCCC-CHHHH
Q 045843 160 EEVPSLNKHLKMLQECLR----NVGTKRICIWGPPGVGKTTIMENLHDAIGES----RQ--FDFIFWVTVNSEG-NIRDI 228 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~i 228 (913)
..++||+.+++++.+++. ....+.+.|+|++|+||||+|+.+++...-. .. ....+|+.++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 457899999999988774 3445689999999999999999999876311 11 3456788877766 88888
Q ss_pred HHHHHHHccCCc---cCCChHHHHHHHHHHHccCCeEEEEeCCCCccc---ccc-c-cCCCCCCCceEEEEeechhhh--
Q 045843 229 QEVLLKRLDLRA---EDHNIDQRADMISEELKDKSYVLFLDEVSTEIN---LRD-I-GIHDEHKNGKVVFACIFRNIC-- 298 (913)
Q Consensus 229 ~~~i~~~l~~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~~-~-~~~~~~~~s~iivTTR~~~v~-- 298 (913)
...++.++.... .+.+.......+.+.+..++.+|||||++.... .+. + .+.....+..||+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 899988883222 123446667788888887777999999987422 122 1 111111678899999875321
Q ss_pred --h----cCCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhC---CcHH-HHHHHHHHh--h---cCCC
Q 045843 299 --G----QIDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECG---GMPH-MIKLIGSSL--A---NVSN 363 (913)
Q Consensus 299 --~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~---GlPl-ai~~~~~~l--~---~~~~ 363 (913)
. .....+.+++++.++..+++.+.+........--++..+.|++.|+ |.|. |+..+-.+. + ..-+
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~ 259 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIR 259 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCC
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccC
Confidence 1 1234999999999999999998853210011122356778888888 8886 444444333 1 1245
Q ss_pred hHHHHHHHHhhcCCCCCCCCchHHHHHHHHHhccCCchhHHHHhhhhccccCCccccHHHHHHHHHhcCchhhhcchHHH
Q 045843 364 PAIWRDMLSQLRSPSMAPKQELEEVYKSFKLVCDKLPSDKQLCLLYWAIFPVGYELHEDYIIECWRAEQFFACLRKLGEA 443 (913)
Q Consensus 364 ~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~ 443 (913)
.+.++.+++... ...+.-++..|+.+.+..+..++....+-.+. +.....--..| +. ...
T Consensus 260 ~~~v~~~~~~~~-------------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~-----~~~ 319 (384)
T 2qby_B 260 KEHVDKAIVDYE-------------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK-----PLS 319 (384)
T ss_dssp HHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC-----CCC
T ss_pred HHHHHHHHHHHh-------------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC-----CCC
Confidence 666666665421 13455677888887776666555511101111 11111111122 11 112
Q ss_pred HHHHHHHHHHHHHhcccccC
Q 045843 444 RDRGQSILDEFVKKSLLEKG 463 (913)
Q Consensus 444 ~~~~~~~~~~L~~~~ll~~~ 463 (913)
.....++++.|...++++..
T Consensus 320 ~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 320 YRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 35667889999999999863
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.33 E-value=5.3e-12 Score=134.32 Aligned_cols=125 Identities=22% Similarity=0.248 Sum_probs=110.2
Q ss_pred CHHhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCccee
Q 045843 501 SEEEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKAL 580 (913)
Q Consensus 501 ~~~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L 580 (913)
......+++.|++.+|.+..++....+++|++|++++|.++.+++ |..+++|++|++++|.++.+|. ++++.+|++|
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 345667899999999999999888889999999999999999887 7999999999999999999876 9999999999
Q ss_pred ecCCccCccccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccc
Q 045843 581 FLNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 581 ~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
++++ +.+..+| .++.+++|++|++++|.+..++ .+ .++ +|++|++..+
T Consensus 118 ~L~~-n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~-------~L~~L~L~~N 166 (291)
T 1h6t_A 118 SLEH-NGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLT-------KLDTLSLEDN 166 (291)
T ss_dssp ECTT-SCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCT-------TCSEEECCSS
T ss_pred ECCC-CcCCCCh-hhcCCCCCCEEEccCCcCCcch-hhccCC-------CCCEEEccCC
Confidence 9999 5788775 6999999999999999997763 34 777 8999988776
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=5.8e-12 Score=128.88 Aligned_cols=125 Identities=26% Similarity=0.376 Sum_probs=95.0
Q ss_pred hhhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceeec
Q 045843 506 EVANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALFL 582 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~L 582 (913)
.+++.|.+.+|.+..++.. ..+++|+.|++++|.+..++...|..+++|++|+|++|.++.+|.. +..+.+|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 5677888888887776442 5677888888888888777777777888888888888888877654 577888888888
Q ss_pred CCccCccccChhhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 583 NNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 583 ~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
++ +.+..+|..++++++|++|++++|.+..+|... .++ +|+.|++..+
T Consensus 120 s~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~l~~N 169 (229)
T 3e6j_A 120 CC-NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS-------SLTHAYLFGN 169 (229)
T ss_dssp CS-SCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT-------TCCEEECTTS
T ss_pred cC-CcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCC-------CCCEEEeeCC
Confidence 87 567788888888888888888888877776553 666 7777777665
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=4.6e-13 Score=144.24 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=61.1
Q ss_pred CceeEEeeccCcccc-----CchHHHhcCCcccEEeccCCccc-ccCccc--cCccCcceeecCCccCccccC----hhh
Q 045843 528 CRILTLLLQESSLAE-----LPASFFGYMCSLQLLDLHDTKIK-LLPSSI--SSLTNLKALFLNNCCQLMRLP----AEV 595 (913)
Q Consensus 528 ~~Lr~L~l~~~~l~~-----l~~~~f~~l~~Lr~LdLs~~~i~-~lp~~i--~~L~~L~~L~L~~c~~l~~lP----~~i 595 (913)
..++.+.+.++.+.. +.. +..+++|++|++++|.+. ..|..+ +++.+|++|+|++|......| ..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 345556665554322 111 123456777777777776 455555 777777777777743222222 234
Q ss_pred hccccCCEEecCCCcCCcCCCc-c-ccccccccccccceeecccc
Q 045843 596 GDLHNLEILDLSHTGICCLPSE-I-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 596 ~~L~~L~~L~L~~~~~~~lp~~-i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
..+++|++|++++|.+..+|.. + .++ +|++|++..+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~Ls~N 179 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFP-------ALTSLDLSDN 179 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCT-------TCCEEECCSC
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCC-------CCCEEECCCC
Confidence 5677777777777777555543 3 666 7777777665
No 106
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.31 E-value=4.6e-11 Score=133.01 Aligned_cols=285 Identities=13% Similarity=0.120 Sum_probs=179.7
Q ss_pred ccccchHHHHHHHHHHHhc----CCCcEEEEECCCCCcHHHHHHHHHHHhccc----CCCceEEEEEeCCCCCHHHHHHH
Q 045843 160 EEVPSLNKHLKMLQECLRN----VGTKRICIWGPPGVGKTTIMENLHDAIGES----RQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
..++||+.+++.+..++.. ...+.+.|+|++|+||||+|+.+++..... +.-...+|+.+....+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 4578999999999998843 456789999999999999999999876421 00234677888888888999999
Q ss_pred HHHHccCCccC--CChHHHHHHHHHHHc--cCCeEEEEeCCCCcccc----ccc----cCCCC---CCCceEEEEeechh
Q 045843 232 LLKRLDLRAED--HNIDQRADMISEELK--DKSYVLFLDEVSTEINL----RDI----GIHDE---HKNGKVVFACIFRN 296 (913)
Q Consensus 232 i~~~l~~~~~~--~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~----~~~----~~~~~---~~~s~iivTTR~~~ 296 (913)
++.+++..... .+..+....+.+.+. +++.+|||||++..... +.+ ..... ..+..+|+||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 99999765432 345666677777774 56889999999874321 111 11111 45667888887653
Q ss_pred hh--------hcCC-ceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhC---CcH-HHHHHHHHHhh----
Q 045843 297 IC--------GQID-EEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECG---GMP-HMIKLIGSSLA---- 359 (913)
Q Consensus 297 v~--------~~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~---GlP-lai~~~~~~l~---- 359 (913)
.. .... ..+.+++++.++..+++.+.+........--++..+.|++.++ |.| .++.++..+..
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAER 258 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 21 1122 4899999999999999998753210011112235677888887 999 34444333321
Q ss_pred -c--CCChHHHHHHHHhhcCCCCCCCCchHHHHHHHHHhccCCchhHHHHhhhhc-cccCCccccHHHHHHHHHh----c
Q 045843 360 -N--VSNPAIWRDMLSQLRSPSMAPKQELEEVYKSFKLVCDKLPSDKQLCLLYWA-IFPVGYELHEDYIIECWRA----E 431 (913)
Q Consensus 360 -~--~~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a-~fp~~~~i~~~~Li~~W~a----~ 431 (913)
+ .-+.+.++.+++... ...+.-++..|+.+.+..+...+ ++-....+....+.+.... .
T Consensus 259 ~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (387)
T 2v1u_A 259 RREERVRREHVYSARAEIE-------------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL 325 (387)
T ss_dssp TTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 1 134556665554421 12345567889888776665555 3322224555544443321 1
Q ss_pred CchhhhcchHHHHHHHHHHHHHHHHhcccccC
Q 045843 432 QFFACLRKLGEARDRGQSILDEFVKKSLLEKG 463 (913)
Q Consensus 432 g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 463 (913)
| +. ......+..+++.|...++++..
T Consensus 326 ~-~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 326 G-LE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp T-CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred C-CC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 2 11 11245677889999999999863
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.30 E-value=1.5e-11 Score=127.96 Aligned_cols=125 Identities=27% Similarity=0.367 Sum_probs=110.5
Q ss_pred hhhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeec
Q 045843 506 EVANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFL 582 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L 582 (913)
..++.|.+.+|.+..++.. ..+++|++|++++|.+..+++..|..+++|++|+|++|.++.+|. .+.++.+|++|+|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 5789999999999887753 788999999999999999999888999999999999999998874 5789999999999
Q ss_pred CCccCccccChh-hhccccCCEEecCCCcCCcCCCc-c-ccccccccccccceeecccc
Q 045843 583 NNCCQLMRLPAE-VGDLHNLEILDLSHTGICCLPSE-I-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 583 ~~c~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~-i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
++ +.+..+|.. ++++++|++|++++|.+..+|.. + .++ +|++|++..+
T Consensus 115 ~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~L~~N 165 (251)
T 3m19_A 115 GG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-------NLQTLSLSTN 165 (251)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------TCCEEECCSS
T ss_pred CC-CcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc-------CCCEEECCCC
Confidence 99 678888766 68999999999999999888875 4 777 8888887766
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.28 E-value=1.1e-11 Score=144.99 Aligned_cols=125 Identities=22% Similarity=0.246 Sum_probs=110.5
Q ss_pred CHHhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCccee
Q 045843 501 SEEEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKAL 580 (913)
Q Consensus 501 ~~~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L 580 (913)
.......++.|++.++.+..++....+++|+.|+|++|.+..+++ |..+++|++|+|++|.+..+| .++.+.+|++|
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 345667899999999999999888899999999999999999887 799999999999999999887 69999999999
Q ss_pred ecCCccCccccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccc
Q 045843 581 FLNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 581 ~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+|++ +.+..+| .++.|++|++|+|++|.+..++ .+ .++ +|+.|++..+
T Consensus 115 ~Ls~-N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~-------~L~~L~Ls~N 163 (605)
T 1m9s_A 115 SLEH-NGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLT-------KLDTLSLEDN 163 (605)
T ss_dssp ECTT-SCCCCCG-GGGGCTTCSEEECCSSCCCCCG-GGGSCT-------TCSEEECCSS
T ss_pred EecC-CCCCCCc-cccCCCccCEEECCCCccCCch-hhcccC-------CCCEEECcCC
Confidence 9999 5677775 5999999999999999997763 34 777 9999998877
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=1.7e-11 Score=122.30 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=111.0
Q ss_pred CHHhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccc-cCccccCccCcce
Q 045843 501 SEEEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKL-LPSSISSLTNLKA 579 (913)
Q Consensus 501 ~~~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~-lp~~i~~L~~L~~ 579 (913)
......+++.|++.+|.+..++....+++|++|++++|.+..++ .|..+++|++|++++|.++. .|..++++++|++
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred ChhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556789999999999999887788999999999999777665 36889999999999999985 7888999999999
Q ss_pred eecCCccCccccChhhhccccCCEEecCCCc-CCcCCCcc-ccccccccccccceeecccccccc
Q 045843 580 LFLNNCCQLMRLPAEVGDLHNLEILDLSHTG-ICCLPSEI-DLTTLCFYFPNVGLLQNFINASKS 642 (913)
Q Consensus 580 L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~-~~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~ 642 (913)
|++++|......|..++++++|++|++++|. +..+| .+ .++ +|++|++..+....
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~-------~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLP-------ELKSLNIQFDGVHD 173 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCS-------SCCEEECTTBCCCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCC-------CCCEEECCCCCCcC
Confidence 9999954444578889999999999999998 77777 34 777 89999998875443
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.27 E-value=9.2e-12 Score=134.00 Aligned_cols=159 Identities=13% Similarity=0.110 Sum_probs=97.8
Q ss_pred cccCcceEEecccCCceEeecCCCcccccccCCceEecccccccchh-ccccccccccccccEEeeccCccccccC--ch
Q 045843 719 KFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHI-WKGSIQSGSLIMLETLILKRCHGMKTLF--SE 795 (913)
Q Consensus 719 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~~ 795 (913)
.+++|++|++++|... ..++..+. .+++|++|+++++.-.... .......+.+++|++|+|++| .++.+. +.
T Consensus 143 ~~~~L~~L~Ls~n~l~-~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~ 217 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSP-AFSCEQVR---AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCA 217 (310)
T ss_dssp BCSCCCEEEEECCSSC-CCCTTSCC---CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHH
T ss_pred hccCCCEEEeeCCCcc-hhhHHHhc---cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHH
Confidence 3455666666654332 33333344 4666666666554321100 000111136788888999884 555441 00
Q ss_pred HHHhhcCCCcEEEEccCchhHhhhcCCcccCCCC---CCccceeecccccccccccccCccCCCCccEEeeecCcccccc
Q 045843 796 EIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRA---FPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNF 872 (913)
Q Consensus 796 ~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~---f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~l 872 (913)
..++.+++|++|++++|......|. .... +++|+.|+++++ .++.++. .. +++|+.|++++| .++.+
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~-----~~~~~~~~~~L~~L~Ls~N-~l~~lp~-~~--~~~L~~L~Ls~N-~l~~~ 287 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNP-----SAPRCMWSSALNSLNLSFA-GLEQVPK-GL--PAKLRVLDLSSN-RLNRA 287 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCS-----CCSSCCCCTTCCCEECCSS-CCCSCCS-CC--CSCCSCEECCSC-CCCSC
T ss_pred HHHhcCCCCCEEECCCCCCCccchh-----hHHhccCcCcCCEEECCCC-CCCchhh-hh--cCCCCEEECCCC-cCCCC
Confidence 1357889999999998874443232 2333 379999999887 4667765 22 389999999986 78888
Q ss_pred cCCCcCCCCcceeeecccccc
Q 045843 873 PSTIENASKLRGIQCNQAWWS 893 (913)
Q Consensus 873 P~~~~~l~~L~~l~~~~~~~~ 893 (913)
|. +..+++|+.++.+.+.|.
T Consensus 288 ~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 288 PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CC-TTSCCCCSCEECSSTTTS
T ss_pred ch-hhhCCCccEEECcCCCCC
Confidence 76 568899999998877654
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=2.1e-11 Score=123.88 Aligned_cols=121 Identities=26% Similarity=0.434 Sum_probs=92.5
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceeecCCccC
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNCCQ 587 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c~~ 587 (913)
+.+...++.+..+|.... ++|+.|++++|.++.+++..|..+++|++|+|++|.++.+ |..+.++.+|++|+|++ +.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-Cc
Confidence 456667777777776432 6788888888888888877778888888888888888866 67788888888888888 57
Q ss_pred ccccChh-hhccccCCEEecCCCcCCcCCCc-c-ccccccccccccceeecccc
Q 045843 588 LMRLPAE-VGDLHNLEILDLSHTGICCLPSE-I-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 588 l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~-i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+..+|.. +.++++|++|++++|.+..++.. + .++ +|++|++..+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~L~~N 138 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-------NLNLLSLYDN 138 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------TCCEEECCSS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC-------CCCEEECCCC
Confidence 7777765 57788888888888888666443 3 666 7777777655
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=2.8e-11 Score=123.82 Aligned_cols=122 Identities=25% Similarity=0.290 Sum_probs=103.8
Q ss_pred hceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceeecCCcc
Q 045843 508 ANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALFLNNCC 586 (913)
Q Consensus 508 ~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~L~~c~ 586 (913)
.+.++..++.+..+|... .++|+.|++++|.+..+++..|..+++|++|+|++|.+..+|.. +.++.+|++|+|++ +
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-N 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-C
Confidence 445777788888888653 38899999999999998888889999999999999999988754 68999999999999 5
Q ss_pred CccccChh-hhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccc
Q 045843 587 QLMRLPAE-VGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 587 ~l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
.+..+|.. +..+++|++|++++|.+..+|..+ .++ +|++|++..+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-------~L~~L~L~~N 145 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT-------HLTHLALDQN 145 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCT-------TCSEEECCSS
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCC-------CCCEEECCCC
Confidence 77777765 688999999999999999899887 777 8888887765
No 113
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.26 E-value=1e-09 Score=122.22 Aligned_cols=284 Identities=15% Similarity=0.130 Sum_probs=180.6
Q ss_pred ccccchHHHHHHHHHHHhc----CCCc--EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHH
Q 045843 160 EEVPSLNKHLKMLQECLRN----VGTK--RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~~----~~~~--vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 233 (913)
..++||+.+++++.+++.. .... .+.|+|++|+||||+|+.+++...... -...+++.++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 4578999999999998854 3334 899999999999999999998875221 13467777778788889999999
Q ss_pred HHccCCccC--CChHHHHHHHHHHHc--cCCeEEEEeCCCCccc--cccc-cCCC--C---CCCceEEEEeechhhhhc-
Q 045843 234 KRLDLRAED--HNIDQRADMISEELK--DKSYVLFLDEVSTEIN--LRDI-GIHD--E---HKNGKVVFACIFRNICGQ- 300 (913)
Q Consensus 234 ~~l~~~~~~--~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~--~~~~-~~~~--~---~~~s~iivTTR~~~v~~~- 300 (913)
..++..... .+.......+.+.+. +++.+|||||++.... ...+ .... . ..+..||+||+.......
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 998764432 345566666666664 5688999999987521 2222 1111 1 146788888876543221
Q ss_pred --------CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh---------CCcHHHHHHHHH-Hhh---
Q 045843 301 --------IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINEC---------GGMPHMIKLIGS-SLA--- 359 (913)
Q Consensus 301 --------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c---------~GlPlai~~~~~-~l~--- 359 (913)
....+.+.+++.++..+++...+........--++....|++.+ +|.|..+..+.. +..
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 23479999999999999998876431111123356788899999 788754443332 221
Q ss_pred --cC--CChHHHHHHHHhhcCCCCCCCCchHHHHHHHHHhccCCchhHHHHhhhhcccc---CCccccHHHHHHHHHh--
Q 045843 360 --NV--SNPAIWRDMLSQLRSPSMAPKQELEEVYKSFKLVCDKLPSDKQLCLLYWAIFP---VGYELHEDYIIECWRA-- 430 (913)
Q Consensus 360 --~~--~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp---~~~~i~~~~Li~~W~a-- 430 (913)
+. -+.+....+...... . .+.-.+..||.+.+.++..++.+. .+..+....+...+..
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~~-~------------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVLF-G------------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHSC-C------------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHHHHhh-h------------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 233344444433221 1 012224567777777777677654 2224566666655533
Q ss_pred --cCchhhhcchHHHHHHHHHHHHHHHHhcccccC
Q 045843 431 --EQFFACLRKLGEARDRGQSILDEFVKKSLLEKG 463 (913)
Q Consensus 431 --~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 463 (913)
.|... -......+++++|...+++...
T Consensus 323 ~~~~~~~------~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 323 EEYGERP------RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHTTCCC------CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHcCCCC------CCHHHHHHHHHHHHhCCCeEEe
Confidence 12110 0134567889999999999763
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=5.1e-12 Score=139.28 Aligned_cols=88 Identities=17% Similarity=0.238 Sum_probs=56.6
Q ss_pred CCceeEEeeccCccccCch----HHHhcCC-cccEEeccCCccccc-CccccCc-----cCcceeecCCccCcccc-Chh
Q 045843 527 CCRILTLLLQESSLAELPA----SFFGYMC-SLQLLDLHDTKIKLL-PSSISSL-----TNLKALFLNNCCQLMRL-PAE 594 (913)
Q Consensus 527 ~~~Lr~L~l~~~~l~~l~~----~~f~~l~-~Lr~LdLs~~~i~~l-p~~i~~L-----~~L~~L~L~~c~~l~~l-P~~ 594 (913)
.++|+.|++++|.++..+. ..|..++ +|++|+|++|.+... +..+..+ .+|++|+|++| .+... |..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHH
Confidence 3447777777777777665 5566777 777777777777744 4445544 77777777774 44433 333
Q ss_pred ----hhcc-ccCCEEecCCCcCCcCC
Q 045843 595 ----VGDL-HNLEILDLSHTGICCLP 615 (913)
Q Consensus 595 ----i~~L-~~L~~L~L~~~~~~~lp 615 (913)
+..+ ++|++|++++|.+...+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHH
Confidence 3333 67777777777775444
No 115
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=2.3e-10 Score=127.18 Aligned_cols=284 Identities=13% Similarity=0.151 Sum_probs=174.5
Q ss_pred ccccchHHHHHHHHHHHh----cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CceEEEEEeCCCCCHHHHHHHHHH
Q 045843 160 EEVPSLNKHLKMLQECLR----NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQ-FDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 160 ~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
..++||+.+++.+.+++. ......+.|+|++|+||||||+.+++....... -...+|+.+....+...+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999886 345678999999999999999999987642110 234677777776778888888888
Q ss_pred HccCCccC--CChHHHHHHHHHHHc--cCCeEEEEeCCCCccc------ccccc-CCC--CCCCceEEEEeechhhhhc-
Q 045843 235 RLDLRAED--HNIDQRADMISEELK--DKSYVLFLDEVSTEIN------LRDIG-IHD--EHKNGKVVFACIFRNICGQ- 300 (913)
Q Consensus 235 ~l~~~~~~--~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~------~~~~~-~~~--~~~~s~iivTTR~~~v~~~- 300 (913)
+++..... .+..+....+.+.+. +++.+|||||++.... +..+. ... ...+..+|+||+.......
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 87654322 345566666776665 4589999999976321 11111 111 3345677888876543221
Q ss_pred --------CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhC---CcHHHH-HHHHHHhh-----c--C
Q 045843 301 --------IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECG---GMPHMI-KLIGSSLA-----N--V 361 (913)
Q Consensus 301 --------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~---GlPlai-~~~~~~l~-----~--~ 361 (913)
....+.+++++.++..+++.+.+........-..+..+.|++.++ |.|..+ ..+..+.. + .
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~ 259 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTK 259 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 225899999999999999998653211122334567778888887 999744 33333221 1 1
Q ss_pred CChHHHHHHHHhhcCCCCCCCCchHHHHHHHHHhccCCchhHHHHhhhhccccC-C-ccccHHHHHHHHH--h--cCchh
Q 045843 362 SNPAIWRDMLSQLRSPSMAPKQELEEVYKSFKLVCDKLPSDKQLCLLYWAIFPV-G-YELHEDYIIECWR--A--EQFFA 435 (913)
Q Consensus 362 ~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~-~-~~i~~~~Li~~W~--a--~g~i~ 435 (913)
-+.+.++.+++... ...+.-++..+|.+.+..+..++..-+ + ..+....+.+... + .| +.
T Consensus 260 i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~ 325 (386)
T 2qby_A 260 VKEEYVYMAKEEIE-------------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VE 325 (386)
T ss_dssp CCHHHHHHHHHHHH-------------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CC
T ss_pred cCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CC
Confidence 34445554443321 234555667788877766665553221 1 1233333333221 1 11 11
Q ss_pred hhcchHHHHHHHHHHHHHHHHhccccc
Q 045843 436 CLRKLGEARDRGQSILDEFVKKSLLEK 462 (913)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~L~~~~ll~~ 462 (913)
+ ........+++.|...++++.
T Consensus 326 ~-----~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 326 A-----VTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp C-----CCHHHHHHHHHHHHHHTSEEE
T ss_pred C-----CCHHHHHHHHHHHHhCCCEEE
Confidence 0 112456678999999999975
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=5.9e-12 Score=138.74 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=76.8
Q ss_pred EeeccCccccCchHHHhcCCcccEEeccCCcccccC-----ccccCcc-CcceeecCCccCcccc-Chhhhcc-----cc
Q 045843 533 LLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-----SSISSLT-NLKALFLNNCCQLMRL-PAEVGDL-----HN 600 (913)
Q Consensus 533 L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-----~~i~~L~-~L~~L~L~~c~~l~~l-P~~i~~L-----~~ 600 (913)
+.+++|.++...+.++...++|++|+|++|.++..+ ..+.+++ +|++|+|++| .+... |..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCC
Confidence 567778888877777777777999999999999776 5678888 8999999995 55544 6667775 99
Q ss_pred CCEEecCCCcCCcCCCc-c-----cc-ccccccccccceeecccc
Q 045843 601 LEILDLSHTGICCLPSE-I-----DL-TTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 601 L~~L~L~~~~~~~lp~~-i-----~L-~~L~~~~~~L~~L~l~~~ 638 (913)
|++|++++|.+...+.. + .+ + +|++|++..+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-------~L~~L~Ls~N 119 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPF-------TITVLDLGWN 119 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCT-------TCCEEECCSS
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCC-------CccEEECcCC
Confidence 99999999998554433 2 22 5 8889888876
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.24 E-value=2.7e-11 Score=139.90 Aligned_cols=111 Identities=30% Similarity=0.381 Sum_probs=68.8
Q ss_pred hhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCcc
Q 045843 507 VANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCC 586 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~ 586 (913)
+++.|++.+|.+..+|... +++|++|++++|.++.+| ..+++|++|+|++|.++.+|. +++ +|++|+|++ +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~-N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN-N 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS-S
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC-C
Confidence 5666777766666666532 356777777777666666 235666777777776666666 554 667777766 4
Q ss_pred CccccChhhhccccCCEEecCCCcCCcCCCccccccccccccccceeecccc
Q 045843 587 QLMRLPAEVGDLHNLEILDLSHTGICCLPSEIDLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 587 ~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~ 638 (913)
.++.+|. .+++|++|++++|.+..+|. .++ +|++|++..+
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~-------~L~~L~Ls~N 170 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE--LPT-------SLEVLSVRNN 170 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC--CCT-------TCCEEECCSS
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC--cCC-------CcCEEECCCC
Confidence 5566665 56667777777666655554 233 5555555443
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=1.9e-11 Score=124.10 Aligned_cols=125 Identities=26% Similarity=0.324 Sum_probs=111.0
Q ss_pred hhhceeeeccccccCCCC--CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceeec
Q 045843 506 EVANRISLIRMCLSTLPK--RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALFL 582 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~L 582 (913)
..++.|.+.+|.+..++. ...+++|+.|++++|.+..+++..|.++++|++|+|++|.++.+|.. +.++.+|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 578999999999998875 37889999999999999999887889999999999999999999876 689999999999
Q ss_pred CCccCcccc-ChhhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 583 NNCCQLMRL-PAEVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 583 ~~c~~l~~l-P~~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
++ +.+..+ |..++.+++|++|+|++|.+..+|... .++ +|+.|++..+
T Consensus 112 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~L~~N 162 (220)
T 2v9t_B 112 NA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-------AIQTMHLAQN 162 (220)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-------TCCEEECCSS
T ss_pred CC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC-------CCCEEEeCCC
Confidence 99 566666 567999999999999999998888764 777 8999998876
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=4.1e-11 Score=120.63 Aligned_cols=121 Identities=28% Similarity=0.371 Sum_probs=95.0
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceeecCCccC
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALFLNNCCQ 587 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~L~~c~~ 587 (913)
+.+...++.+..+|... .++|+.|++++|.++.+++..|..+++|++|++++|.++.+|.. +.++.+|++|++++ +.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC-Cc
Confidence 34556666677776542 46889999999988888888888899999999999999888754 67899999999998 56
Q ss_pred ccccChh-hhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 588 LMRLPAE-VGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 588 l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
+..+|.. ++++++|++|++++|.+..+|... .++ +|++|++..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~l~~N 134 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT-------QLKDLRLYQN 134 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------TCCEEECCSS
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC-------cCCEEECCCC
Confidence 7777655 688999999999999887777654 666 7777777654
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=3e-11 Score=121.68 Aligned_cols=126 Identities=28% Similarity=0.388 Sum_probs=111.9
Q ss_pred hhhhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceee
Q 045843 505 WEVANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALF 581 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~ 581 (913)
..+++.|++.+|.+..++.. ..+++|++|++++|.++.+++..|..+++|++|+|++|.++.+|.. +.++.+|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35799999999999988864 6899999999999999999998889999999999999999988765 68999999999
Q ss_pred cCCccCccccChh-hhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 582 LNNCCQLMRLPAE-VGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 582 L~~c~~l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
+++ +.+..+|.. ++++++|++|++++|.+..+|... .++ +|++|++..+
T Consensus 107 L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-------~L~~L~l~~N 158 (208)
T 2o6s_A 107 LNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-------SLQYIWLHDN 158 (208)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-------TCCEEECCSC
T ss_pred cCC-CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC-------CccEEEecCC
Confidence 999 577777765 789999999999999998888764 788 9999998876
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=1.4e-11 Score=116.70 Aligned_cols=122 Identities=19% Similarity=0.188 Sum_probs=105.3
Q ss_pred hhhhceeeecccccc--CCCCC-CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccc-cCccccCccCccee
Q 045843 505 WEVANRISLIRMCLS--TLPKR-PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKL-LPSSISSLTNLKAL 580 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~--~l~~~-~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~-lp~~i~~L~~L~~L 580 (913)
..+++.|++.+|.+. .+|.. ..+++|+.|++++|.++.+ ..|..+++|++|++++|.++. +|..++++++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367999999999988 77766 7889999999999988888 446899999999999999997 88888889999999
Q ss_pred ecCCccCccccC--hhhhccccCCEEecCCCcCCcCCC---c-c-ccccccccccccceeecc
Q 045843 581 FLNNCCQLMRLP--AEVGDLHNLEILDLSHTGICCLPS---E-I-DLTTLCFYFPNVGLLQNF 636 (913)
Q Consensus 581 ~L~~c~~l~~lP--~~i~~L~~L~~L~L~~~~~~~lp~---~-i-~L~~L~~~~~~L~~L~l~ 636 (913)
++++ +.+..+| ..++.+++|++|++++|.+..+|. . + .++ +|+.|++.
T Consensus 94 ~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-------~L~~L~l~ 148 (149)
T 2je0_A 94 NLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-------QLTYLDGY 148 (149)
T ss_dssp ECTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-------TCCEETTB
T ss_pred ECCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-------CcccccCC
Confidence 9999 5677765 789999999999999999988877 2 3 677 88888764
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=6.7e-11 Score=120.07 Aligned_cols=121 Identities=18% Similarity=0.293 Sum_probs=92.2
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCc-hHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCcc
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELP-ASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCC 586 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~-~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~ 586 (913)
+.+++.++.+..+|... .+.++.|++++|.++.++ ...|..+++|++|+|++|.++.++. .+.++.+|++|+|++ +
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-N 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-S
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC-C
Confidence 46778888888877642 356788889888888874 4557888899999999988887765 688888999999988 5
Q ss_pred CccccCh-hhhccccCCEEecCCCcCCcCC-Ccc-ccccccccccccceeecccc
Q 045843 587 QLMRLPA-EVGDLHNLEILDLSHTGICCLP-SEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 587 ~l~~lP~-~i~~L~~L~~L~L~~~~~~~lp-~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
.+..+|. .++++++|++|++++|.+..++ ..+ .++ +|++|++..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~L~~N 139 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-------SVRLLSLYDN 139 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT-------TCSEEECTTS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc-------cCCEEECCCC
Confidence 6666655 4788889999999988886654 444 666 7777777655
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=1.6e-11 Score=119.00 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=107.7
Q ss_pred hhhceeeecccccc--CCCCC-CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccc-cCccccCccCcceee
Q 045843 506 EVANRISLIRMCLS--TLPKR-PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKL-LPSSISSLTNLKALF 581 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~--~l~~~-~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~-lp~~i~~L~~L~~L~ 581 (913)
.+++.|.+.+|.+. .+|.. ..+++|+.|++++|.++.+ ..|..+++|++|++++|.+.. +|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 57899999999988 78776 7889999999999988887 446899999999999999997 777788899999999
Q ss_pred cCCccCccccC--hhhhccccCCEEecCCCcCCcCCC----cc-ccccccccccccceeeccccc
Q 045843 582 LNNCCQLMRLP--AEVGDLHNLEILDLSHTGICCLPS----EI-DLTTLCFYFPNVGLLQNFINA 639 (913)
Q Consensus 582 L~~c~~l~~lP--~~i~~L~~L~~L~L~~~~~~~lp~----~i-~L~~L~~~~~~L~~L~l~~~~ 639 (913)
+++ +.+..+| ..++.+++|++|++++|.+..+|. .+ .++ +|++|++..+.
T Consensus 102 Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-------~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP-------QLTYLDGYDRE 158 (168)
T ss_dssp CBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS-------SCCEETTEETT
T ss_pred ccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc-------cCcEecCCCCC
Confidence 999 5788876 689999999999999999988887 33 777 99999988773
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.20 E-value=7.3e-11 Score=136.32 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=68.8
Q ss_pred CceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEEecC
Q 045843 528 CRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEILDLS 607 (913)
Q Consensus 528 ~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L~L~ 607 (913)
.+|+.|++++|.++.+|..+ +++|++|+|++|.++.+| +.+.+|++|+|++ +.++.+|. +++ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~-N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACD-NRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCS-SCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccC-CCCCCcch-hhc--CCCEEECC
Confidence 36788888888777777754 367888888888888887 4567888888888 46777777 555 88888888
Q ss_pred CCcCCcCCCccccccccccccccceeecccc
Q 045843 608 HTGICCLPSEIDLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 608 ~~~~~~lp~~i~L~~L~~~~~~L~~L~l~~~ 638 (913)
+|.+..+|. .++ +|+.|++..+
T Consensus 129 ~N~l~~lp~--~l~-------~L~~L~Ls~N 150 (571)
T 3cvr_A 129 NNQLTMLPE--LPA-------LLEYINADNN 150 (571)
T ss_dssp SSCCSCCCC--CCT-------TCCEEECCSS
T ss_pred CCcCCCCCC--cCc-------cccEEeCCCC
Confidence 888866776 455 7777777766
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.19 E-value=3.5e-11 Score=122.21 Aligned_cols=125 Identities=14% Similarity=0.232 Sum_probs=109.3
Q ss_pred hhhceeeeccccccCCCC---CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceee
Q 045843 506 EVANRISLIRMCLSTLPK---RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALF 581 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~---~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~ 581 (913)
..++.|.+.+|.+..++. ...+++|+.|++++|.++.+++..|.++++|++|+|++|.++.+|. .++++.+|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 467899999999998854 3689999999999999999998888999999999999999998865 489999999999
Q ss_pred cCCccCcccc-ChhhhccccCCEEecCCCcCCcC-CCcc-ccccccccccccceeecccc
Q 045843 582 LNNCCQLMRL-PAEVGDLHNLEILDLSHTGICCL-PSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 582 L~~c~~l~~l-P~~i~~L~~L~~L~L~~~~~~~l-p~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
|++ +.+..+ |..+..+++|++|++++|.+..+ |..+ .++ +|+.|++..+
T Consensus 112 Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~L~~N 163 (220)
T 2v70_A 112 LRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH-------SLSTLNLLAN 163 (220)
T ss_dssp CTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT-------TCCEEECCSC
T ss_pred CCC-CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC-------CCCEEEecCc
Confidence 999 566665 77799999999999999999776 5555 788 9999998876
No 126
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=3.1e-11 Score=120.40 Aligned_cols=128 Identities=14% Similarity=0.175 Sum_probs=111.0
Q ss_pred HHhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccc-cCccccCccCccee
Q 045843 502 EEEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKL-LPSSISSLTNLKAL 580 (913)
Q Consensus 502 ~~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~-lp~~i~~L~~L~~L 580 (913)
.....+++.|++.+|.+..++....+++|++|++++|.++......|..+++|++|++++|.++. .|..++++++|++|
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 34456899999999988888777889999999999998887444446899999999999999994 67889999999999
Q ss_pred ecCCccCccccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccc
Q 045843 581 FLNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 581 ~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
++++|..+..+| .++.+++|++|++++|.+..+| .+ .++ +|++|++..+
T Consensus 142 ~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~-------~L~~L~l~~N 191 (197)
T 4ezg_A 142 DLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFP-------KLNQLYAFSQ 191 (197)
T ss_dssp ECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCS-------SCCEEEECBC
T ss_pred EccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCC-------CCCEEEeeCc
Confidence 999966588888 6999999999999999998877 44 777 9999998876
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=2.1e-11 Score=119.18 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=105.5
Q ss_pred hhhceeeeccccccCCCCCCCCC-ceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccc-cCccCcceeecC
Q 045843 506 EVANRISLIRMCLSTLPKRPKCC-RILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSI-SSLTNLKALFLN 583 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~~~~~-~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i-~~L~~L~~L~L~ 583 (913)
.+++.|++.+|.+..++....+. +|+.|++++|.++.++ .|..+++|++|++++|.++.+|..+ +.+++|++|+++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 47889999999999887665555 9999999999888873 3689999999999999999988665 899999999999
Q ss_pred CccCccccCh--hhhccccCCEEecCCCcCCcCCCc----c-ccccccccccccceeecccc
Q 045843 584 NCCQLMRLPA--EVGDLHNLEILDLSHTGICCLPSE----I-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 584 ~c~~l~~lP~--~i~~L~~L~~L~L~~~~~~~lp~~----i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+ +.+..+|. .++.+++|++|++++|.+..+|.. + .++ +|+.|++..+
T Consensus 97 ~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~-------~L~~Ld~~~n 150 (176)
T 1a9n_A 97 N-NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP-------QVRVLDFQKV 150 (176)
T ss_dssp S-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT-------TCSEETTEEC
T ss_pred C-CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCC-------ccceeCCCcC
Confidence 9 67888887 789999999999999999888875 4 777 8888888776
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.16 E-value=2.9e-11 Score=126.51 Aligned_cols=118 Identities=21% Similarity=0.234 Sum_probs=62.8
Q ss_pred hhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCcc
Q 045843 507 VANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCC 586 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~ 586 (913)
++.++.+.++.+..++....+++|+.|++++|.++.++. |..+++|++|+|++|.++.+|. +.++++|++|++++ +
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~-N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR-N 95 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-S
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC-C
Confidence 444445555555554444455556666666655555542 4555666666666666655555 55566666666665 3
Q ss_pred CccccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccc
Q 045843 587 QLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 587 ~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
.+..+|... . .+|++|++++|.+..+|. + .++ +|+.|++..+
T Consensus 96 ~l~~l~~~~-~-~~L~~L~L~~N~l~~~~~-l~~l~-------~L~~L~Ls~N 138 (263)
T 1xeu_A 96 RLKNLNGIP-S-ACLSRLFLDNNELRDTDS-LIHLK-------NLEILSIRNN 138 (263)
T ss_dssp CCSCCTTCC-C-SSCCEEECCSSCCSBSGG-GTTCT-------TCCEEECTTS
T ss_pred ccCCcCccc-c-CcccEEEccCCccCCChh-hcCcc-------cccEEECCCC
Confidence 455554322 2 556666666665544432 2 444 5555555443
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.15 E-value=1.8e-10 Score=120.40 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=110.3
Q ss_pred HHhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceee
Q 045843 502 EEEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALF 581 (913)
Q Consensus 502 ~~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~ 581 (913)
.....+++.|++.+|.+..++....+++|+.|++++|.++.+++ |..+++|++|++++|.++.+|.... .+|++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 45667899999999999999877889999999999999999887 7999999999999999999887444 9999999
Q ss_pred cCCccCccccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccccccc
Q 045843 582 LNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFINASKS 642 (913)
Q Consensus 582 L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~ 642 (913)
+++ +.+..+| .++++++|++|++++|.+..+| .+ .++ +|+.|++..+....
T Consensus 113 L~~-N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~-------~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 113 LDN-NELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLS-------KLEVLDLHGNEITN 164 (263)
T ss_dssp CCS-SCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCT-------TCCEEECTTSCCCB
T ss_pred ccC-CccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCC-------CCCEEECCCCcCcc
Confidence 999 5788876 5999999999999999998776 34 777 99999998875443
No 130
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.13 E-value=8.3e-10 Score=114.03 Aligned_cols=192 Identities=12% Similarity=0.078 Sum_probs=115.8
Q ss_pred ccccccchHHHHHHHHHHHhcCC-CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHc
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVG-TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRL 236 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 236 (913)
.+.+++||+..++.+..++.... .+.+.|+|++|+||||+|+.+++.......+.. ......... ..+....
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~ 93 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDNC-REIEQGR 93 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHHH-HHHHTTC
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHHH-HHHhccC
Confidence 34568899999999999996654 358899999999999999999987752221100 000000000 0010000
Q ss_pred cCC-----ccCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEEEeechhhhhc--
Q 045843 237 DLR-----AEDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVFACIFRNICGQ-- 300 (913)
Q Consensus 237 ~~~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iivTTR~~~v~~~-- 300 (913)
... ............+.+.+ .+++.+||+||++... .+..+.. .....+..+|+||+.......
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp CSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred CcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH
Confidence 000 00000011111122221 2468999999997642 2333211 133457788888876542221
Q ss_pred --CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHh
Q 045843 301 --IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSL 358 (913)
Q Consensus 301 --~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l 358 (913)
....+.+++++.++..+++.+.+... ...--++..+.|++.|+|.|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEE--HIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHT--TCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34689999999999999999877542 112235677899999999999888776544
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=2e-10 Score=112.20 Aligned_cols=122 Identities=26% Similarity=0.383 Sum_probs=104.0
Q ss_pred hceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceeecCCcc
Q 045843 508 ANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALFLNNCC 586 (913)
Q Consensus 508 ~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~L~~c~ 586 (913)
.+.+.+.++.+..+|.. -.++|+.|++++|.++.+++..|..+++|++|++++|.++.+|.. ++++.+|++|++++ +
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-N 86 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred CCEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-C
Confidence 35677778888888754 347899999999999999988889999999999999999988765 68999999999999 5
Q ss_pred CccccChh-hhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 587 QLMRLPAE-VGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 587 ~l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
.+..+|.. ++++++|++|++++|.+..+|..+ .++ +|++|++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-------~L~~L~l~~N 134 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT-------SLQKIWLHTN 134 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-------TCCEEECCSS
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCc-------ccCEEEecCC
Confidence 77777765 689999999999999998888775 677 8999988876
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.12 E-value=2.7e-10 Score=112.93 Aligned_cols=120 Identities=26% Similarity=0.350 Sum_probs=103.8
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeecCCccC
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFLNNCCQ 587 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L~~c~~ 587 (913)
+.+.+.++.+..+|... .++|+.|++++|.++.+|. .|..+++|++|+|++|.|+.++ ..|.++.+|++|+|++ +.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-Cc
Confidence 46778888888888653 4789999999999999985 5699999999999999999886 5699999999999999 56
Q ss_pred ccccCh-hhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 588 LMRLPA-EVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 588 l~~lP~-~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
+..+|. .++++++|++|+|++|.+..+|... .++ +|+.|++..+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~L~~N 136 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS-------ALSHLAIGAN 136 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-------TCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc-------cccEEEeCCC
Confidence 777765 6999999999999999998888864 788 8999988876
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1.3e-10 Score=135.05 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=104.9
Q ss_pred hhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCcc
Q 045843 507 VANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCC 586 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~ 586 (913)
.++.|++.+|.+..+|....+++|+.|++++|.++.+|.. |+.+++|++|+|++|.++.+| .+++|++|++|+|++ +
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-N 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-S
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-C
Confidence 5888999999999999888899999999999999999875 599999999999999999998 899999999999999 5
Q ss_pred Ccccc--ChhhhccccCCEEecCCCcCCcCCCcc-----ccccccccccccceee
Q 045843 587 QLMRL--PAEVGDLHNLEILDLSHTGICCLPSEI-----DLTTLCFYFPNVGLLQ 634 (913)
Q Consensus 587 ~l~~l--P~~i~~L~~L~~L~L~~~~~~~lp~~i-----~L~~L~~~~~~L~~L~ 634 (913)
.+..+ |..+++|++|++|++++|.+..+|..+ .++ +|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp-------~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP-------SVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT-------TCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc-------ccCccC
Confidence 77777 899999999999999999997777654 355 777775
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=1.6e-10 Score=114.64 Aligned_cols=121 Identities=21% Similarity=0.379 Sum_probs=102.4
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCchH-HHhcCCcccEEeccCCccccc-CccccCccCcceeecCCcc
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPAS-FFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNCC 586 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~-~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c~ 586 (913)
+.+.+.++.+..+|... ..+|++|++++|.+..+++. .|..+++|++|+|++|.++.+ |..++++.+|++|+|++ +
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-N 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-C
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-C
Confidence 67888899998888753 34899999999999988874 579999999999999999977 77899999999999999 5
Q ss_pred CccccCh-hhhccccCCEEecCCCcCCcC-CCcc-ccccccccccccceeecccc
Q 045843 587 QLMRLPA-EVGDLHNLEILDLSHTGICCL-PSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 587 ~l~~lP~-~i~~L~~L~~L~L~~~~~~~l-p~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
.+..+|. .++++++|++|++++|.+..+ |..+ .++ +|++|++..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-------SLTSLNLASN 136 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-------TCCEEECTTC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-------CCCEEEeCCC
Confidence 6776655 488999999999999999555 5555 788 8999998876
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=2.1e-10 Score=110.99 Aligned_cols=114 Identities=25% Similarity=0.240 Sum_probs=101.3
Q ss_pred HhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC--ccccCccCccee
Q 045843 503 EEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP--SSISSLTNLKAL 580 (913)
Q Consensus 503 ~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp--~~i~~L~~L~~L 580 (913)
....+++.|++.+|.+..++....+++|++|++++|.+...++..+..+++|++|++++|.++.+| ..++++++|++|
T Consensus 46 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred HhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 456789999999999998866688999999999999998856666788999999999999999887 789999999999
Q ss_pred ecCCccCccccCh----hhhccccCCEEecCCCcCCcCCCc
Q 045843 581 FLNNCCQLMRLPA----EVGDLHNLEILDLSHTGICCLPSE 617 (913)
Q Consensus 581 ~L~~c~~l~~lP~----~i~~L~~L~~L~L~~~~~~~lp~~ 617 (913)
++++ +.+..+|. .+..+++|++|++++|.+..+|..
T Consensus 126 ~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 126 DLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp ECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EeeC-CcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 9999 57888886 789999999999999998888764
No 136
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.10 E-value=1.7e-09 Score=109.98 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=117.5
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHc
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRL 236 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 236 (913)
..+.+++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.+..+.......+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 34556889999999999999877666699999999999999999998753111112233444444333333222221111
Q ss_pred cCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEeechhhhhc----CCceEEcc
Q 045843 237 DLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFACIFRNICGQ----IDEEVNVQ 308 (913)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTTR~~~v~~~----~~~~~~l~ 308 (913)
.... .-.+++.+||+||++.... ++.+. +.....+..+|+||+....... ....+.+.
T Consensus 94 ~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~ 159 (226)
T 2chg_A 94 RTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (226)
T ss_dssp TSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred cccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecC
Confidence 1000 0125789999999987532 22221 1123456788888876542211 33489999
Q ss_pred cCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHH
Q 045843 309 RLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSS 357 (913)
Q Consensus 309 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~ 357 (913)
+++.++..+++.+.+.... ..--++....|++.++|.|..+..+...
T Consensus 160 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEG--VKITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHT--CCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999998764321 1122467788999999999865554443
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=2.4e-10 Score=111.06 Aligned_cols=108 Identities=22% Similarity=0.343 Sum_probs=93.3
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceeecCCccC
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALFLNNCCQ 587 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~L~~c~~ 587 (913)
+.+.+.++.+..+|... .++|+.|++++|.++.+++..|.++++|++|+|++|.++.+|.. +.++.+|++|+|++ +.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-Cc
Confidence 56788888888888754 38999999999999999888889999999999999999999876 58999999999999 67
Q ss_pred ccccChh-hhccccCCEEecCCCcCCcCCCcc
Q 045843 588 LMRLPAE-VGDLHNLEILDLSHTGICCLPSEI 618 (913)
Q Consensus 588 l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~~i 618 (913)
+..+|.. ++++++|++|++++|.+...|..+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 8888876 889999999999999986666544
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.08 E-value=2.1e-10 Score=126.19 Aligned_cols=121 Identities=23% Similarity=0.273 Sum_probs=95.3
Q ss_pred ceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHh-cCCcccEEeccCCcccccC-ccccCccCcceeecCCcc
Q 045843 509 NRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFG-YMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFLNNCC 586 (913)
Q Consensus 509 ~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~-~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L~~c~ 586 (913)
+.+.+.++.+..+|... .+.++.|++++|.++.++...|. .+++|++|+|++|.|+.+| ..+.++.+|++|+|++ +
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-N 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-S
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC-C
Confidence 56777788888887642 35688899999988888887777 8889999999999998776 4588899999999998 5
Q ss_pred CccccCh-hhhccccCCEEecCCCcCCcCCC-cc-ccccccccccccceeecccc
Q 045843 587 QLMRLPA-EVGDLHNLEILDLSHTGICCLPS-EI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 587 ~l~~lP~-~i~~L~~L~~L~L~~~~~~~lp~-~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
.+..+|. .+.++.+|++|+|++|.+..++. .+ .++ +|++|++..+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-------~L~~L~L~~N 146 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-------QLQKLYLSQN 146 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------TCCEEECCSS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-------cCCEEECCCC
Confidence 6777665 47888999999999998866643 34 777 8888887765
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=2.9e-10 Score=123.33 Aligned_cols=103 Identities=12% Similarity=0.103 Sum_probs=82.2
Q ss_pred ccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccc-eeecccccccccccccCc
Q 045843 774 SLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLK-SFQLINLPKLSSICHNMS 852 (913)
Q Consensus 774 ~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~-~L~l~~~~~l~~i~~~~~ 852 (913)
.+++|+.|+|++ ++++.+ +...+.++++|+.|.+.++ ++.|+. ..+.++++|+ .+.+.+ +++.+....+
T Consensus 224 ~~~~L~~l~L~~-n~i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~----~aF~~~~~L~~~l~l~~--~l~~I~~~aF 293 (329)
T 3sb4_A 224 YMPNLVSLDISK-TNATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQ----RVFSNCGRLAGTLELPA--SVTAIEFGAF 293 (329)
T ss_dssp HCTTCCEEECTT-BCCCEE-CTTTTTTCTTCCEEECCTT--CCEECT----TTTTTCTTCCEEEEECT--TCCEECTTTT
T ss_pred hcCCCeEEECCC-CCccee-cHhhhhCCCCCCEEECCcc--cceehH----HHhhCChhccEEEEEcc--cceEEchhhh
Confidence 378999999998 457777 5578899999999999875 666643 2566778888 898887 6788876678
Q ss_pred cCCCCccEEeeecCcccccccCC-CcCCCCcceeee
Q 045843 853 LAWPLLETITIKACDELRNFPST-IENASKLRGIQC 887 (913)
Q Consensus 853 ~~~p~L~~L~i~~C~~L~~lP~~-~~~l~~L~~l~~ 887 (913)
..+++|+.|++.+ ++++.++.. +.++++|+.|+.
T Consensus 294 ~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 294 MGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred hCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 8899999999977 589999875 668999998864
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.05 E-value=2.2e-10 Score=137.46 Aligned_cols=104 Identities=26% Similarity=0.420 Sum_probs=67.9
Q ss_pred hhhceeeeccccccCCCCC-CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCC
Q 045843 506 EVANRISLIRMCLSTLPKR-PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNN 584 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~ 584 (913)
..++.|++.+|.+..+|.. ..+++|++|+|++|.++.+|..+ ..+++|++|+|++|.|+.+|..|++|.+|++|+|++
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC
Confidence 4566666666666666543 45666666666666666666543 666666666666666666666666666666666666
Q ss_pred ccCccccChhhhccccCCEEecCCCcC
Q 045843 585 CCQLMRLPAEVGDLHNLEILDLSHTGI 611 (913)
Q Consensus 585 c~~l~~lP~~i~~L~~L~~L~L~~~~~ 611 (913)
+.++.+|.+|++|++|++|+|++|.+
T Consensus 303 -N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 303 -NMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp -SCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred -CCCCccChhhhcCCCccEEeCCCCcc
Confidence 45666666666666666666666666
No 141
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=3.1e-10 Score=124.81 Aligned_cols=126 Identities=26% Similarity=0.330 Sum_probs=110.2
Q ss_pred hhhhceeeeccccccCCCCC--C-CCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCccee
Q 045843 505 WEVANRISLIRMCLSTLPKR--P-KCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKAL 580 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~~--~-~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L 580 (913)
+..++.|++.+|.+..++.. . .+++|++|++++|.++.+++..|..+++|++|+|++|.++.+|. .+.++.+|++|
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 34688999999999988765 3 89999999999999999998888999999999999999998875 58999999999
Q ss_pred ecCCccCcccc-ChhhhccccCCEEecCCCcCCcCCCcc-----ccccccccccccceeecccc
Q 045843 581 FLNNCCQLMRL-PAEVGDLHNLEILDLSHTGICCLPSEI-----DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 581 ~L~~c~~l~~l-P~~i~~L~~L~~L~L~~~~~~~lp~~i-----~L~~L~~~~~~L~~L~l~~~ 638 (913)
+|++ +.+..+ |..+.++++|++|+|++|.+..+|..+ .++ +|+.|++..+
T Consensus 118 ~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~-------~L~~L~L~~N 173 (361)
T 2xot_A 118 LLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP-------KLMLLDLSSN 173 (361)
T ss_dssp ECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CT-------TCCEEECCSS
T ss_pred ECCC-CcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCC-------cCCEEECCCC
Confidence 9999 566665 677999999999999999998888765 356 8999988876
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=5.7e-10 Score=108.06 Aligned_cols=107 Identities=24% Similarity=0.371 Sum_probs=92.0
Q ss_pred hceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceeecCCcc
Q 045843 508 ANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALFLNNCC 586 (913)
Q Consensus 508 ~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~L~~c~ 586 (913)
.+.+++.+|.+..+|... .++|+.|++++|.++.+++..|..+++|++|+|++|.++.+|.. +.++.+|++|+|++ +
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-N 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-C
Confidence 467888899999888654 48899999999999999888889999999999999999988765 58999999999999 6
Q ss_pred CccccChh-hhccccCCEEecCCCcCCcCCC
Q 045843 587 QLMRLPAE-VGDLHNLEILDLSHTGICCLPS 616 (913)
Q Consensus 587 ~l~~lP~~-i~~L~~L~~L~L~~~~~~~lp~ 616 (913)
.+..+|.. ++++++|++|+|++|.+...+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 78888764 8899999999999998854443
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.00 E-value=5.5e-10 Score=110.67 Aligned_cols=106 Identities=19% Similarity=0.283 Sum_probs=96.0
Q ss_pred hhhhceeeeccccccCCCCC-CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeec
Q 045843 505 WEVANRISLIRMCLSTLPKR-PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFL 582 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~~-~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L 582 (913)
..+++.|++.+|.+..+|.. ..+++|+.|++++|.++.+++..|.++++|++|+|++|.++.+|. .+.++.+|++|+|
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35799999999999988744 688999999999999999999889999999999999999998864 6999999999999
Q ss_pred CCccCccccChh-hhccccCCEEecCCCcC
Q 045843 583 NNCCQLMRLPAE-VGDLHNLEILDLSHTGI 611 (913)
Q Consensus 583 ~~c~~l~~lP~~-i~~L~~L~~L~L~~~~~ 611 (913)
++ +.+..+|.. +..+++|++|++++|.+
T Consensus 110 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 99 678888874 88999999999999987
No 144
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.00 E-value=8e-09 Score=111.66 Aligned_cols=269 Identities=14% Similarity=0.103 Sum_probs=152.2
Q ss_pred ccccccchHHHHHHHHHHHhc-----CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRN-----VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 232 (913)
.+.+++|++..++.+..++.. .....+.|+|++|+|||++|+.+++... .. .+++..+......++...+
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--~~---~~~~~~~~~~~~~~l~~~l 84 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--VN---LRVTSGPAIEKPGDLAAIL 84 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT--CC---EEEECTTTCCSHHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC--CC---EEEEeccccCChHHHHHHH
Confidence 455688999999988887742 3446788999999999999999998764 22 2344433322222222111
Q ss_pred HHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--cccc-------c--CC-C----------CCCCceEEE
Q 045843 233 LKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDI-------G--IH-D----------EHKNGKVVF 290 (913)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~-------~--~~-~----------~~~~s~iiv 290 (913)
. .. ..++.+|+|||+..... ...+ . .. . ...+..+|.
T Consensus 85 ~--------------------~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 85 A--------------------NS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp T--------------------TT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred H--------------------Hh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1 00 13566888888876431 1111 0 00 0 012456776
Q ss_pred Eeechhhhhc-----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhhc-----
Q 045843 291 ACIFRNICGQ-----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLAN----- 360 (913)
Q Consensus 291 TTR~~~v~~~-----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~~----- 360 (913)
||........ ....+.+.+++.+|..+++.+.+... ...--++....+++.++|.|-.+..+...+..
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~ 221 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLL--GVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVA 221 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTT
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHh
Confidence 6664432211 33589999999999999998877543 12233567889999999999887776655431
Q ss_pred ---CCChHHHHHHHHhhcCCCCCCCCch-HHHHHHHHHhccCCchhHHHHhhhhccccCCccccHHHHHH----HHHhcC
Q 045843 361 ---VSNPAIWRDMLSQLRSPSMAPKQEL-EEVYKSFKLVCDKLPSDKQLCLLYWAIFPVGYELHEDYIIE----CWRAEQ 432 (913)
Q Consensus 361 ---~~~~~~w~~~~~~l~~~~~~~~~~~-~~i~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~----~W~a~g 432 (913)
.-+.+....++..+.. ........ ..+...+.-.|..-|......-..++ +++..+.+ +-+..|
T Consensus 222 ~~~~i~~~~~~~~~~~~~~-~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lg-------i~~~tl~~~l~~~~i~~~ 293 (324)
T 1hqc_A 222 GEEVITRERALEALAALGL-DELGLEKRDREILEVLILRFGGGPVGLATLATALS-------EDPGTLEEVHEPYLIRQG 293 (324)
T ss_dssp SCSCCCHHHHHHHHHHHTC-CTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTT-------SCHHHHHHHTHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHhcc-cccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhC-------CCHHHHHHHHhHHHHHhc
Confidence 1344555555554432 11111111 12322222233222222222222333 34443333 456789
Q ss_pred chhhhcchHHHHHHHHHHHH-HHHHhccccc
Q 045843 433 FFACLRKLGEARDRGQSILD-EFVKKSLLEK 462 (913)
Q Consensus 433 ~i~~~~~~~~~~~~~~~~~~-~L~~~~ll~~ 462 (913)
++.....+....+.|.+||+ ++.+|+|+|+
T Consensus 294 li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 294 LLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp SEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred chhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 99776677788899999998 9999999985
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.00 E-value=3.5e-10 Score=110.39 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=96.4
Q ss_pred hhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc--cccCccCcceeecCC
Q 045843 507 VANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS--SISSLTNLKALFLNN 584 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~--~i~~L~~L~~L~L~~ 584 (913)
+++.|++.+|.+..++....+++|++|++++|.++.+|+.+|..+++|++|++++|.+..+|. .++++++|++|++++
T Consensus 43 ~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp CCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecC
Confidence 899999999999988777899999999999999999998888999999999999999999987 899999999999999
Q ss_pred ccCccccChh----hhccccCCEEecCCCcC
Q 045843 585 CCQLMRLPAE----VGDLHNLEILDLSHTGI 611 (913)
Q Consensus 585 c~~l~~lP~~----i~~L~~L~~L~L~~~~~ 611 (913)
+.+..+|.. ++.+++|++||+++|..
T Consensus 123 -N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 123 -NPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp -SGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred -CCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 578888885 89999999999998875
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.99 E-value=6.2e-10 Score=110.26 Aligned_cols=105 Identities=22% Similarity=0.271 Sum_probs=93.9
Q ss_pred hhhceeeeccccccCCCC---CCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceee
Q 045843 506 EVANRISLIRMCLSTLPK---RPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALF 581 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~---~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~ 581 (913)
..++.|.+.+|.+..++. ...+++|++|++++|.++.+++..|..+++|++|+|++|.++.+|. .+.++++|++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 488999999999998876 3689999999999999999988778999999999999999997765 589999999999
Q ss_pred cCCccCccc-cChhhhccccCCEEecCCCcC
Q 045843 582 LNNCCQLMR-LPAEVGDLHNLEILDLSHTGI 611 (913)
Q Consensus 582 L~~c~~l~~-lP~~i~~L~~L~~L~L~~~~~ 611 (913)
|++| .+.. .|..++.+++|++|++++|.+
T Consensus 109 L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 109 LYDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 9994 5554 477899999999999999987
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.98 E-value=1.2e-09 Score=130.87 Aligned_cols=124 Identities=25% Similarity=0.304 Sum_probs=60.2
Q ss_pred hhhceeeeccccccCCCCC-CCCCceeEEe-----eccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcce
Q 045843 506 EVANRISLIRMCLSTLPKR-PKCCRILTLL-----LQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKA 579 (913)
Q Consensus 506 ~~~~~Lsl~~~~~~~l~~~-~~~~~Lr~L~-----l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~ 579 (913)
..++++++..+.+...+.. .....|+.+. +..|.+. +++..|..++.|++|+|++|.+..+|..++++.+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 3566777766666554432 2222222222 2222222 4455567777777777777777777777777777777
Q ss_pred eecCCccCccccChhhhccccCCEEecCCCcCCcCCCcc-ccccccccccccceeecccc
Q 045843 580 LFLNNCCQLMRLPAEVGDLHNLEILDLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 580 L~L~~c~~l~~lP~~i~~L~~L~~L~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
|+|++ +.+..+|..+++|++|++|+|++|.+..+|..+ .|+ +|++|++..+
T Consensus 252 L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-------~L~~L~L~~N 303 (727)
T 4b8c_D 252 LYLNG-NSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF-------QLKYFYFFDN 303 (727)
T ss_dssp CBCTT-SCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT-------TCSEEECCSS
T ss_pred EEeeC-CcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC-------CCCEEECCCC
Confidence 77777 456677777777777777777777777777766 666 7777777665
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=1.6e-09 Score=105.77 Aligned_cols=107 Identities=29% Similarity=0.409 Sum_probs=95.9
Q ss_pred hhhhceeeeccccccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceee
Q 045843 505 WEVANRISLIRMCLSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALF 581 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~ 581 (913)
..+++.|.+.+|.+..++.. ..+++|++|++++|.++.+++..|..+++|++|++++|.++.+|.. +.++.+|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 35899999999999988764 6789999999999999999998889999999999999999988765 68999999999
Q ss_pred cCCccCccccChh-hhccccCCEEecCCCcCC
Q 045843 582 LNNCCQLMRLPAE-VGDLHNLEILDLSHTGIC 612 (913)
Q Consensus 582 L~~c~~l~~lP~~-i~~L~~L~~L~L~~~~~~ 612 (913)
+++ +.+..+|.. +.++++|++|++++|.+.
T Consensus 107 l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 107 LDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCS-SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcC-CcceEeCHHHhcCCcccCEEEecCCCee
Confidence 999 578888876 588999999999999874
No 149
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.94 E-value=4.4e-10 Score=130.54 Aligned_cols=117 Identities=19% Similarity=0.197 Sum_probs=101.6
Q ss_pred hhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCcc
Q 045843 507 VANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCC 586 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~ 586 (913)
.++.+.+.+|.+..++. ..|++|++++|.++.+|. |..+++|++|+|++|.++.+|..+++|++|++|+|++ +
T Consensus 424 ~L~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N 496 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEY----ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-N 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHH----TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-S
T ss_pred hhhhhhhhcccccccCc----cCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-C
Confidence 44555555666655543 358999999999999986 7999999999999999999999999999999999999 6
Q ss_pred CccccChhhhccccCCEEecCCCcCCcC--CCcc-ccccccccccccceeecccc
Q 045843 587 QLMRLPAEVGDLHNLEILDLSHTGICCL--PSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 587 ~l~~lP~~i~~L~~L~~L~L~~~~~~~l--p~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
.++.+| .+++|++|++|+|++|.+..+ |..+ .++ +|+.|++..+
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-------~L~~L~L~~N 543 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-------RLVLLNLQGN 543 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-------TCCEEECTTS
T ss_pred CCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-------CCCEEEecCC
Confidence 788899 899999999999999999777 7777 888 9999999887
No 150
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.93 E-value=1.6e-09 Score=102.36 Aligned_cols=105 Identities=28% Similarity=0.318 Sum_probs=92.2
Q ss_pred HhhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC--ccccCccCccee
Q 045843 503 EEWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP--SSISSLTNLKAL 580 (913)
Q Consensus 503 ~~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp--~~i~~L~~L~~L 580 (913)
....+++.|++.+|.+..++....+++|++|++++|.+....+..+..+++|++|++++|.++.+| ..++++++|++|
T Consensus 39 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp TTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred hhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 345689999999999998866688999999999999998855666788999999999999999875 889999999999
Q ss_pred ecCCccCccccCh----hhhccccCCEEecCC
Q 045843 581 FLNNCCQLMRLPA----EVGDLHNLEILDLSH 608 (913)
Q Consensus 581 ~L~~c~~l~~lP~----~i~~L~~L~~L~L~~ 608 (913)
++++ +.+..+|. .++.+++|++||+++
T Consensus 119 ~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 119 DLFN-CEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTT-CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred eCcC-CcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999 57787776 689999999999863
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=1.4e-08 Score=109.75 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=115.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHc
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRL 236 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 236 (913)
..+.+++|++..++.+.+++.....+.+.++|++|+||||+|+.+++...-.......+++..+.......+ +++++.+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~ 96 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHF 96 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHH
Confidence 345568899999999999998776666999999999999999999987531111112334433332222222 1111111
Q ss_pred cCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEEEeechhh-hhc---CCceEEc
Q 045843 237 DLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVFACIFRNI-CGQ---IDEEVNV 307 (913)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iivTTR~~~v-~~~---~~~~~~l 307 (913)
.... ..+ .+++.+||+||++... .++.+.. .....++.+|+||+...- ... ....+.+
T Consensus 97 ~~~~-------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~ 163 (323)
T 1sxj_B 97 AQKK-------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRY 163 (323)
T ss_dssp HHBC-------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred Hhcc-------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEee
Confidence 1000 001 3468999999998743 2222211 123456788888866432 111 4458999
Q ss_pred ccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH-HHHHHHHH
Q 045843 308 QRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH-MIKLIGSS 357 (913)
Q Consensus 308 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~~~ 357 (913)
.+++.++..+++.+.+... ...--++....|++.|+|.|. |+..+...
T Consensus 164 ~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 164 SKLSDEDVLKRLLQIIKLE--DVKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHH--TCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999998876432 111224677899999999995 45555443
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=7e-09 Score=100.67 Aligned_cols=98 Identities=27% Similarity=0.393 Sum_probs=87.0
Q ss_pred eeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceeecCCccCccccChh-hhccccCCEEecC
Q 045843 530 ILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNCCQLMRLPAE-VGDLHNLEILDLS 607 (913)
Q Consensus 530 Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c~~l~~lP~~-i~~L~~L~~L~L~ 607 (913)
-+.++++++.+..+|..+ .++|++|+|++|.++.+ |..++++.+|++|+|++ +.+..+|.. ++++++|++|+|+
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECC
Confidence 378999999999999865 38999999999999987 56799999999999999 688888876 5899999999999
Q ss_pred CCcCCcCCCc-c-ccccccccccccceeecccc
Q 045843 608 HTGICCLPSE-I-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 608 ~~~~~~lp~~-i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+|.+..+|.. + .++ +|++|++..+
T Consensus 90 ~N~l~~l~~~~~~~l~-------~L~~L~L~~N 115 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLK-------SLTHIYLYNN 115 (174)
T ss_dssp SSCCCCCCTTTTTTCT-------TCSEEECCSS
T ss_pred CCccceeCHHHhcccc-------CCCEEEeCCC
Confidence 9999888887 4 788 9999998877
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.81 E-value=7.4e-09 Score=100.13 Aligned_cols=99 Identities=30% Similarity=0.355 Sum_probs=87.4
Q ss_pred ceeEEeeccCccccCchHHHhcCCcccEEeccCCccccc-CccccCccCcceeecCCccCccccChh-hhccccCCEEec
Q 045843 529 RILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLL-PSSISSLTNLKALFLNNCCQLMRLPAE-VGDLHNLEILDL 606 (913)
Q Consensus 529 ~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~l-p~~i~~L~~L~~L~L~~c~~l~~lP~~-i~~L~~L~~L~L 606 (913)
..+++++++|.++.+|..+ .+.|++|+|++|.|+.+ |..+.++.+|++|+|++ +.+..+|.. +.++++|++|+|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEEC
Confidence 3578999999999999865 48999999999999988 56799999999999999 678888876 589999999999
Q ss_pred CCCcCCcCCCcc--ccccccccccccceeecccc
Q 045843 607 SHTGICCLPSEI--DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 607 ~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~ 638 (913)
++|.+..+|... .++ +|++|++..+
T Consensus 86 ~~N~l~~~~~~~~~~l~-------~L~~L~L~~N 112 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLK-------SLTHIWLLNN 112 (170)
T ss_dssp CSSCCCCCCTTTTTTCT-------TCCEEECCSS
T ss_pred CCCccCEeCHHHhcCCC-------CCCEEEeCCC
Confidence 999998888864 788 9999998877
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.77 E-value=2.9e-10 Score=113.40 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=75.0
Q ss_pred hhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecC
Q 045843 504 EWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLN 583 (913)
Q Consensus 504 ~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~ 583 (913)
...+++.|++.+|.+..+|....+++|+.|++++|.+..+|.. +..+++|++|++++|.++.+| .++++++|++|+++
T Consensus 46 ~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp HTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEES
T ss_pred cCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECC
Confidence 3456777777777777777546677777777777777776653 366677777777777777776 47777777777777
Q ss_pred CccCccccCh--hhhccccCCEEecCCCcC
Q 045843 584 NCCQLMRLPA--EVGDLHNLEILDLSHTGI 611 (913)
Q Consensus 584 ~c~~l~~lP~--~i~~L~~L~~L~L~~~~~ 611 (913)
+ +.+..+|. .++.+++|++|++++|.+
T Consensus 124 ~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 124 N-NKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp E-EECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred C-CcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 7 45666554 577777777777777776
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.71 E-value=3.9e-10 Score=112.39 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=88.2
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCccccCccCcceeecCCccCccccChhhhccccCCEE
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPSSISSLTNLKALFLNNCCQLMRLPAEVGDLHNLEIL 604 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~~L~~L 604 (913)
..+++|++|++++|.+..+| .|..+++|++|++++|.++.+|..+..+++|++|++++ +.+..+| .++++++|++|
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-HHHHHHHSSEE
T ss_pred hcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-ccccCCCCCEE
Confidence 56789999999999888887 46889999999999999999998888889999999999 5788887 68999999999
Q ss_pred ecCCCcCCcCCC--cc-ccccccccccccceeecccc
Q 045843 605 DLSHTGICCLPS--EI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 605 ~L~~~~~~~lp~--~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
++++|.+..+|. .+ .++ +|++|++..+
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~-------~L~~L~l~~N 150 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALD-------KLEDLLLAGN 150 (198)
T ss_dssp EESEEECCCHHHHHHHTTTT-------TCSEEEECSC
T ss_pred ECCCCcCCchhHHHHHhcCC-------CCCEEEecCC
Confidence 999999876654 33 667 8888888776
No 156
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.71 E-value=1.1e-07 Score=102.80 Aligned_cols=180 Identities=16% Similarity=0.167 Sum_probs=114.6
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHcc
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLD 237 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~ 237 (913)
.+.+++|++..++.+.+++.....+.+.++|++|+||||+|+.+++...-...-...+.+..+.......+.
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------- 94 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR-------- 94 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH--------
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH--------
Confidence 455688999999999999988777779999999999999999999875311100122333332211111111
Q ss_pred CCccCCChHHHHHHHHHH-----H-ccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEEEeechhhh-hc---CCc
Q 045843 238 LRAEDHNIDQRADMISEE-----L-KDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVFACIFRNIC-GQ---IDE 303 (913)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~-----l-~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iivTTR~~~v~-~~---~~~ 303 (913)
..+.+. + .+++.+||+||++... .+..+.. .....++++|+||+...-. .. ...
T Consensus 95 ------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 95 ------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp ------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred ------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 111111 1 2578899999998743 2222211 1234567888888764321 11 344
Q ss_pred eEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHhh
Q 045843 304 EVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSLA 359 (913)
Q Consensus 304 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l~ 359 (913)
.+.+.+++.++..+++.+.+... ...--++....|++.++|.|..+..+...+.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENE--GLELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTT--TCEECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 88999999999999998876433 1112346778899999999986665554443
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=2.4e-08 Score=108.04 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=67.1
Q ss_pred ccCcceEEecccCCceEeecCCCcccccccCCceEecccccccchhcccccccccccccc-EEeeccCccccccCchHHH
Q 045843 720 FGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLE-TLILKRCHGMKTLFSEEII 798 (913)
Q Consensus 720 l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~-~L~L~~c~~l~~l~~~~~l 798 (913)
+++|++|++.++. +..+.+..+. .+++|++|.+.+. +..+. ...+..+++|+ .|+|.+ .++.+ +...+
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~---~~~~L~~l~l~~n--i~~I~--~~aF~~~~~L~~~l~l~~--~l~~I-~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFA---QKKYLLKIKLPHN--LKTIG--QRVFSNCGRLAGTLELPA--SVTAI-EFGAF 293 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTT---TCTTCCEEECCTT--CCEEC--TTTTTTCTTCCEEEEECT--TCCEE-CTTTT
T ss_pred cCCCeEEECCCCC-cceecHhhhh---CCCCCCEEECCcc--cceeh--HHHhhCChhccEEEEEcc--cceEE-chhhh
Confidence 5788888888743 4366665566 7888888888542 32221 22224678888 888876 56666 44678
Q ss_pred hhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeec
Q 045843 799 FQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQL 838 (913)
Q Consensus 799 ~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l 838 (913)
.++++|+.|+++++. ++.+.. ..+.++++|+.++.
T Consensus 294 ~~c~~L~~l~l~~n~-i~~I~~----~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 294 MGCDNLRYVLATGDK-ITTLGD----ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTEEEEEECSSC-CCEECT----TTTCTTCCCCEEEC
T ss_pred hCCccCCEEEeCCCc-cCccch----hhhcCCcchhhhcc
Confidence 889999999986554 555532 24556677777653
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=4.2e-07 Score=100.67 Aligned_cols=263 Identities=9% Similarity=0.059 Sum_probs=152.0
Q ss_pred CCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCccCccccC-hhhhccccCCEE
Q 045843 527 CCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCCQLMRLP-AEVGDLHNLEIL 604 (913)
Q Consensus 527 ~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~lP-~~i~~L~~L~~L 604 (913)
+..+..+.+.. .++.++...|.++ +|+.+.+..+ ++.++. .|.+ .+|+.+.+.+ .+..++ ..|.+|.+|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCee
Confidence 35556666554 3666777777775 6888888765 776654 3555 3688888875 456665 457888888888
Q ss_pred ecCCCcCCcCCCcc-ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccceeecC
Q 045843 605 DLSHTGICCLPSEI-DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYLRFAD 683 (913)
Q Consensus 605 ~L~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 683 (913)
++.+|.+..+|... ... +|+.+.+...
T Consensus 186 ~l~~n~l~~I~~~aF~~~-------~L~~l~lp~~--------------------------------------------- 213 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYA-------GIEEVLLPVT--------------------------------------------- 213 (401)
T ss_dssp ECTTSCCSEECTTTTTTC-------CCSEEECCTT---------------------------------------------
T ss_pred ecCCCcceEechhhEeec-------ccCEEEeCCc---------------------------------------------
Confidence 88888777676654 323 4444443211
Q ss_pred CCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCceEeccc-cccc
Q 045843 684 GEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISH-LPKL 762 (913)
Q Consensus 684 l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~-~~~l 762 (913)
+..+....+.++++|+.+.+.. .+..+-...+. . .+|+.+.+.+ +..+
T Consensus 214 -------------------------l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~---~-~~L~~i~lp~~i~~I 262 (401)
T 4fdw_A 214 -------------------------LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFR---E-SGITTVKLPNGVTNI 262 (401)
T ss_dssp -------------------------CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTT---T-CCCSEEEEETTCCEE
T ss_pred -------------------------hheehhhHhhCCCCCCEEecCC--CccCccccccc---c-CCccEEEeCCCccEE
Confidence 1111111234445555555543 22222222233 2 4566665521 1111
Q ss_pred chhccccccccccccccEEeeccCcc----ccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeec
Q 045843 763 MHIWKGSIQSGSLIMLETLILKRCHG----MKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQL 838 (913)
Q Consensus 763 ~~~~~~~~~~~~l~~L~~L~L~~c~~----l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l 838 (913)
. ......+++|+.+++.++.. +..+ +...+.++++|+.+.+.+ .++.+.. ..+.++++|+.+.|
T Consensus 263 ~-----~~aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~~--~i~~I~~----~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 263 A-----SRAFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIPE--SIRILGQ----GLLGGNRKVTQLTI 330 (401)
T ss_dssp C-----TTTTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCCT--TCCEECT----TTTTTCCSCCEEEE
T ss_pred C-----hhHhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeCC--ceEEEhh----hhhcCCCCccEEEE
Confidence 1 11123466777777765211 1123 345677888888888863 3555532 24556678888888
Q ss_pred ccccccccccccCccCCCCccEEeeecCcccccccCC-CcCC-CCcceeeeccccccc
Q 045843 839 INLPKLSSICHNMSLAWPLLETITIKACDELRNFPST-IENA-SKLRGIQCNQAWWSS 894 (913)
Q Consensus 839 ~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~-~~~l-~~L~~l~~~~~~~~~ 894 (913)
.+ +++.+....+..+ +|+.+++.++ .+..++.. +..+ .++..|++-.+..+.
T Consensus 331 p~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 331 PA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp CT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred Cc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHHHH
Confidence 54 4677766566677 8999999885 56666654 3355 467788887765433
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.62 E-value=5.5e-08 Score=106.19 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=75.3
Q ss_pred eeeeccc-cccCCCCCCCCCceeEEeecc-CccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeecCCcc
Q 045843 510 RISLIRM-CLSTLPKRPKCCRILTLLLQE-SSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFLNNCC 586 (913)
Q Consensus 510 ~Lsl~~~-~~~~l~~~~~~~~Lr~L~l~~-~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L~~c~ 586 (913)
.+...++ .+..+|....+++|+.|+|++ |.+..+++..|.++++|++|+|++|.|+.+| ..|++|.+|++|+|++ +
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-N 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-S
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-C
Confidence 3455555 677777766677788888885 7888888777788888888888888888665 4577888888888888 6
Q ss_pred CccccChhhhccccCCEEecCCCcCC
Q 045843 587 QLMRLPAEVGDLHNLEILDLSHTGIC 612 (913)
Q Consensus 587 ~l~~lP~~i~~L~~L~~L~L~~~~~~ 612 (913)
.+..+|..+.....|++|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 77777766544444888888888763
No 160
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.62 E-value=5.8e-07 Score=94.78 Aligned_cols=163 Identities=6% Similarity=0.029 Sum_probs=103.8
Q ss_pred ccchHHHHHHHHHHH----hcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC---C--ceEEEEEeCCCCCHHHHHHHH
Q 045843 162 VPSLNKHLKMLQECL----RNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQ---F--DFIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L----~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~---F--~~~~wv~vs~~~~~~~i~~~i 232 (913)
+.||++++++|...| .+...+.+-|+|++|+|||++++.|++....... . -..+.|.+....+...+...|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 569999999998777 3456778999999999999999999998853211 1 135566666777888999999
Q ss_pred HHHccCCccC-CChHHHHHHHHHHH---ccCCeEEEEeCCCCccccccc----cCC-CCCCCceEEEEeechhh-----h
Q 045843 233 LKRLDLRAED-HNIDQRADMISEEL---KDKSYVLFLDEVSTEINLRDI----GIH-DEHKNGKVVFACIFRNI-----C 298 (913)
Q Consensus 233 ~~~l~~~~~~-~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~----~~~-~~~~~s~iivTTR~~~v-----~ 298 (913)
.+++...... ....+....+.+.+ +++++++|||+++.....+.+ ..+ .......||.++...+. .
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~ 181 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQIN 181 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcc
Confidence 9999654321 11222222332322 456799999999875422111 111 11112233444443221 1
Q ss_pred h----cC-CceEEcccCChHHHHHHHHHHhC
Q 045843 299 G----QI-DEEVNVQRLSGKDAQKLFWETVG 324 (913)
Q Consensus 299 ~----~~-~~~~~l~~L~~~~~~~Lf~~~~~ 324 (913)
. .. ...+.+.+++.++-.+++.+++.
T Consensus 182 ~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 182 IMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp TCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 12 25799999999999999988874
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=2.2e-07 Score=101.42 Aligned_cols=98 Identities=17% Similarity=0.101 Sum_probs=83.6
Q ss_pred eEEeeccC-ccccCchHHHhcCCcccEEeccC-CcccccC-ccccCccCcceeecCCccCccccCh-hhhccccCCEEec
Q 045843 531 LTLLLQES-SLAELPASFFGYMCSLQLLDLHD-TKIKLLP-SSISSLTNLKALFLNNCCQLMRLPA-EVGDLHNLEILDL 606 (913)
Q Consensus 531 r~L~l~~~-~l~~l~~~~f~~l~~Lr~LdLs~-~~i~~lp-~~i~~L~~L~~L~L~~c~~l~~lP~-~i~~L~~L~~L~L 606 (913)
..++++++ .++.+|. |..+++|++|+|++ |.++.+| ..|++|.+|++|+|++ +.+..+|. .|++|++|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeC
Confidence 35688887 8999998 69999999999996 9999887 5799999999999999 56776654 6899999999999
Q ss_pred CCCcCCcCCCcc-ccccccccccccceeecccc
Q 045843 607 SHTGICCLPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 607 ~~~~~~~lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
++|.+..+|..+ ... .|+.|++..+
T Consensus 88 ~~N~l~~~~~~~~~~~-------~L~~l~l~~N 113 (347)
T 2ifg_A 88 SFNALESLSWKTVQGL-------SLQELVLSGN 113 (347)
T ss_dssp CSSCCSCCCSTTTCSC-------CCCEEECCSS
T ss_pred CCCccceeCHHHcccC-------CceEEEeeCC
Confidence 999998898876 444 5888887766
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.48 E-value=9.5e-07 Score=94.96 Aligned_cols=180 Identities=14% Similarity=0.190 Sum_probs=111.9
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCc-eEEEEEeCCCCCHHHHHHHHHHHc
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFD-FIFWVTVNSEGNIRDIQEVLLKRL 236 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l 236 (913)
.+.+++|++..++.+.+++.....+.+.++|++|+|||++|+.+++...- ..+. ..+.+..+.....
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~----------- 82 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGI----------- 82 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT-TCHHHHCEEEETTSTTCT-----------
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC-CcccCCeEEEeCccccCh-----------
Confidence 45568899999999999987776666999999999999999999987521 1111 1222333321110
Q ss_pred cCCccCCChHHHHHHHHHH--H-ccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEeechh-hhhc---CCceE
Q 045843 237 DLRAEDHNIDQRADMISEE--L-KDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFACIFRN-ICGQ---IDEEV 305 (913)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTTR~~~-v~~~---~~~~~ 305 (913)
............. + .+++.++|+||++.... ...+. +.....+..+|+||.... +... ....+
T Consensus 83 ------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i 156 (319)
T 2chq_A 83 ------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (319)
T ss_dssp ------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEE
T ss_pred ------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEE
Confidence 1111111111111 1 25688999999976432 22221 112345677887776543 2111 44589
Q ss_pred EcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHH
Q 045843 306 NVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSS 357 (913)
Q Consensus 306 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~ 357 (913)
.+.+++.++..+++.+.+... ...--++....+++.++|.+..+......
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 157 RFKPVPKEAMKKRLLEICEKE--GVKITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp ECCCCCHHHHHHHHHHHHHTT--CCCBCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999998876543 12223567788999999999765544433
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.47 E-value=1.2e-06 Score=97.09 Aligned_cols=246 Identities=15% Similarity=0.153 Sum_probs=147.3
Q ss_pred ccCCCCC--CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeecCCccCccccChh
Q 045843 518 LSTLPKR--PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFLNNCCQLMRLPAE 594 (913)
Q Consensus 518 ~~~l~~~--~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L~~c~~l~~lP~~ 594 (913)
+..++.. ..| +|+.+.+..+ ++.++...|.++ .|+.+.+.. .++.++ ..|.++.+|+.+++.+ +.+..+|..
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~ 198 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPAS 198 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTT
T ss_pred cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechh
Confidence 4444433 344 6888888765 777888888774 689998886 677775 5688899999999988 678888877
Q ss_pred hhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccC
Q 045843 595 VGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSG 672 (913)
Q Consensus 595 i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~ 672 (913)
...+.+|+.+.+..+ +..++... ... +|+.+.+..... .+ +... +..
T Consensus 199 aF~~~~L~~l~lp~~-l~~I~~~aF~~~~-------~L~~l~l~~~l~----------~I----~~~a---------F~~ 247 (401)
T 4fdw_A 199 TFVYAGIEEVLLPVT-LKEIGSQAFLKTS-------QLKTIEIPENVS----------TI----GQEA---------FRE 247 (401)
T ss_dssp TTTTCCCSEEECCTT-CCEECTTTTTTCT-------TCCCEECCTTCC----------EE----CTTT---------TTT
T ss_pred hEeecccCEEEeCCc-hheehhhHhhCCC-------CCCEEecCCCcc----------Cc----cccc---------ccc
Confidence 556788999988743 66666554 555 677666553200 00 0000 000
Q ss_pred CccccceeecCCCCCchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCC----ceEeecCCCcccccc
Q 045843 673 CSAEKYLRFADGEGFPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNE----MISIIDGNLTEGVTF 748 (913)
Q Consensus 673 ~~~~~~l~l~~l~~l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~l~~~~~~ 748 (913)
..|+.+.+. +.+..+....+.++++|+.+.+.++.. ...+....+. .+
T Consensus 248 -----------------~~L~~i~lp--------~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~---~c 299 (401)
T 4fdw_A 248 -----------------SGITTVKLP--------NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE---GC 299 (401)
T ss_dssp -----------------CCCSEEEEE--------TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT---TC
T ss_pred -----------------CCccEEEeC--------CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh---CC
Confidence 011111111 123334444467788888888876321 1123444466 68
Q ss_pred cCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCC
Q 045843 749 QHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSR 828 (913)
Q Consensus 749 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 828 (913)
++|+.+.+.+ ++..+. ......+++|+.|.|.+ +++.+ ....+.++ +|+.|.+.++.. ..+.. ..+.
T Consensus 300 ~~L~~l~l~~--~i~~I~--~~aF~~c~~L~~l~lp~--~l~~I-~~~aF~~~-~L~~l~l~~n~~-~~l~~----~~F~ 366 (401)
T 4fdw_A 300 PKLARFEIPE--SIRILG--QGLLGGNRKVTQLTIPA--NVTQI-NFSAFNNT-GIKEVKVEGTTP-PQVFE----KVWY 366 (401)
T ss_dssp TTCCEECCCT--TCCEEC--TTTTTTCCSCCEEEECT--TCCEE-CTTSSSSS-CCCEEEECCSSC-CBCCC----SSCC
T ss_pred ccCCeEEeCC--ceEEEh--hhhhcCCCCccEEEECc--cccEE-cHHhCCCC-CCCEEEEcCCCC-ccccc----cccc
Confidence 8888888853 222221 11223578899999864 36655 33567788 899999987642 22321 1334
Q ss_pred CCC-ccceeeccc
Q 045843 829 AFP-KLKSFQLIN 840 (913)
Q Consensus 829 ~f~-~L~~L~l~~ 840 (913)
+++ ++..|.+-.
T Consensus 367 ~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 367 GFPDDITVIRVPA 379 (401)
T ss_dssp CSCTTCCEEEECG
T ss_pred CCCCCccEEEeCH
Confidence 453 566776654
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.41 E-value=6.4e-07 Score=88.19 Aligned_cols=149 Identities=18% Similarity=0.226 Sum_probs=85.4
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccC-----CCceEEEEEeCCCCCHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESR-----QFDFIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-----~F~~~~wv~vs~~~~~~~i~~~i 232 (913)
.+..++||+..++.+.+++.......+.|+|++|+|||++|+.+++...... .....+++.++. +.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 90 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 90 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH---
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh---
Confidence 3456789999999999999777677889999999999999999998763110 112233333211 10
Q ss_pred HHHccCCccCCChHHHHHHHHHHH--ccCCeEEEEeCCCCcc---------ccccccCC-CCCCCceEEEEeechhhh--
Q 045843 233 LKRLDLRAEDHNIDQRADMISEEL--KDKSYVLFLDEVSTEI---------NLRDIGIH-DEHKNGKVVFACIFRNIC-- 298 (913)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---------~~~~~~~~-~~~~~s~iivTTR~~~v~-- 298 (913)
...............+.+.+ .+++.+|||||++... ........ ....+..+|+||......
T Consensus 91 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 166 (195)
T 1jbk_A 91 ----AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQY 166 (195)
T ss_dssp ----TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHH
T ss_pred ----ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHH
Confidence 00000001111122222222 3567899999997642 11111111 122345677777665421
Q ss_pred ----hc---CCceEEcccCChHHHHHHH
Q 045843 299 ----GQ---IDEEVNVQRLSGKDAQKLF 319 (913)
Q Consensus 299 ----~~---~~~~~~l~~L~~~~~~~Lf 319 (913)
.. ....+.+.+++.++..+++
T Consensus 167 ~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 167 IEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 11 2236888999888876653
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.40 E-value=4.9e-06 Score=92.26 Aligned_cols=296 Identities=16% Similarity=0.199 Sum_probs=146.1
Q ss_pred CCCCceeEEeeccCccccCchHHHhcCCcccEEeccCCcccccC-ccccCccCcceeecCC------------cc-----
Q 045843 525 PKCCRILTLLLQESSLAELPASFFGYMCSLQLLDLHDTKIKLLP-SSISSLTNLKALFLNN------------CC----- 586 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp-~~i~~L~~L~~L~L~~------------c~----- 586 (913)
..|.+|+.+.+.. .++.+....|.++.+|+.++|..+ ++.++ ..+.++.+|+.+.+.. |.
T Consensus 68 ~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 68 QGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred hCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence 6677788887764 366677777777788888877643 55554 2355666666555432 11
Q ss_pred ---Ccccc-ChhhhccccCCEEecCCCcCCcCCCcc--ccccccccccccceeecccccccccCCCCCccceeeeecccc
Q 045843 587 ---QLMRL-PAEVGDLHNLEILDLSHTGICCLPSEI--DLTTLCFYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQ 660 (913)
Q Consensus 587 ---~l~~l-P~~i~~L~~L~~L~L~~~~~~~lp~~i--~L~~L~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~ 660 (913)
.+..+ ...+.++.+|+.+.+..+ ...++... ... +|+.+.+..... .+. ..
T Consensus 146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~-------~L~~i~l~~~~~----------~I~---~~-- 202 (394)
T 4fs7_A 146 IPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCG-------KLKSIKLPRNLK----------IIR---DY-- 202 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-------TCCBCCCCTTCC----------EEC---TT--
T ss_pred cCccccccchhhhcccCCCcEEecCCc-cceeccccccCCC-------CceEEEcCCCce----------EeC---ch--
Confidence 11111 234678889999988654 34454443 334 455554432200 000 00
Q ss_pred CCCCCccccccCCccccceeecCC-CC-----CchhhHHHhcccccccccccccccccCccccCcccCcceEEecccCCc
Q 045843 661 RSSPHMEFDFSGCSAEKYLRFADG-EG-----FPDAVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEM 734 (913)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~l~l~~l-~~-----l~~~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 734 (913)
.+..|..+..+.+..- .. +....++.+.+. .....+....+..+.+|+.+.+... .
T Consensus 203 --------~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip--------~~~~~i~~~~f~~~~~l~~~~~~~~--~ 264 (394)
T 4fs7_A 203 --------CFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIP--------DSFTELGKSVFYGCTDLESISIQNN--K 264 (394)
T ss_dssp --------TTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEEC--------TTCCEECSSTTTTCSSCCEEEECCT--T
T ss_pred --------hhccccccceeecCCCceEeehhhcccCCCceEEEC--------CCceecccccccccccceeEEcCCC--c
Confidence 0111111111100000 00 000011111111 1111222222345566666666542 1
Q ss_pred eEeecCCCcccccccCCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCch
Q 045843 735 ISIIDGNLTEGVTFQHLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKE 814 (913)
Q Consensus 735 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~ 814 (913)
..+....+. .++.|+.+...... + .......+.+|+.+.+.+ .++.+ ....+.++++|+.+.|.+ .
T Consensus 265 ~~i~~~~F~---~~~~l~~~~~~~~~-i-----~~~~F~~~~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~--~ 330 (394)
T 4fs7_A 265 LRIGGSLFY---NCSGLKKVIYGSVI-V-----PEKTFYGCSSLTEVKLLD--SVKFI-GEEAFESCTSLVSIDLPY--L 330 (394)
T ss_dssp CEECSCTTT---TCTTCCEEEECSSE-E-----CTTTTTTCTTCCEEEECT--TCCEE-CTTTTTTCTTCCEECCCT--T
T ss_pred ceeeccccc---cccccceeccCcee-e-----cccccccccccccccccc--cccee-chhhhcCCCCCCEEEeCC--c
Confidence 133333233 45566665553311 1 011123466777777754 34444 335667777888877743 2
Q ss_pred hHhhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccCCCcCCCCccee
Q 045843 815 MEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPSTIENASKLRGI 885 (913)
Q Consensus 815 l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~~~~l~~L~~l 885 (913)
++.|.. ..+.++.+|+.+.+.. +++.+....+..+++|+.+++.+ .++.+...+.++++|+.+
T Consensus 331 v~~I~~----~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 331 VEEIGK----RSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEECT----TTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred ccEEhH----HhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 444432 2445567777777753 36666555666777888887764 455555556677777765
No 166
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.39 E-value=3.4e-06 Score=92.80 Aligned_cols=188 Identities=12% Similarity=0.089 Sum_probs=109.4
Q ss_pred ccccccchHHHHHHHHHHHhcCCC-cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHc
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGT-KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRL 236 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 236 (913)
.+.+++|++..++.+..++..... ..+.|+|+.|+||||+|+.+.+.......+.. ..+... .. ...+...-
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~---~~-~~~~~~~~ 86 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC---DN-CREIEQGR 86 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS---HH-HHHHHTSC
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc---HH-HHHHhccC
Confidence 345678999999999999976553 56889999999999999999987753221100 000000 00 01111000
Q ss_pred cCC-----cc-CCChHHHHHHHHHHH-----ccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEEEeechh-hhhc
Q 045843 237 DLR-----AE-DHNIDQRADMISEEL-----KDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVFACIFRN-ICGQ 300 (913)
Q Consensus 237 ~~~-----~~-~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iivTTR~~~-v~~~ 300 (913)
... .. ....+.. ..+.+.+ .+++.+||+||++... .++.+.. .....+..+|++|.... +...
T Consensus 87 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp CSSCEEEETTCSCCSSCH-HHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHH
T ss_pred CCceEEecccccCCHHHH-HHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHH
Confidence 000 00 0111111 1222222 3567899999997643 2222211 12334566777775433 2111
Q ss_pred ---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHH
Q 045843 301 ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIG 355 (913)
Q Consensus 301 ---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 355 (913)
....+.+.+++.++..+++.+.+... ...--.+....|++.++|.|..+..+.
T Consensus 166 l~sr~~~i~~~~l~~~~~~~~l~~~~~~~--~~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 166 ILSRCLQFHLKALDVEQIRHQLEHILNEE--HIAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHH--TCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHhheeEeeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 45689999999999999998766332 111224567889999999998776654
No 167
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=2.1e-06 Score=98.55 Aligned_cols=205 Identities=16% Similarity=0.187 Sum_probs=116.4
Q ss_pred CccccccchHHHHHHHHHHHhc-----------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEe
Q 045843 157 KKMEEVPSLNKHLKMLQECLRN-----------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTV 219 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 219 (913)
..+.+++|++..++++.+++.. ...+.+.|+|++|+||||+|+.+++... + ..+.+..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~ 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNA 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeC
Confidence 3456789999999999999853 1346899999999999999999998763 2 2344445
Q ss_pred CCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHH--HccCCeEEEEeCCCCcccc-----ccccCCCCCCCceEEEEe
Q 045843 220 NSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEE--LKDKSYVLFLDEVSTEINL-----RDIGIHDEHKNGKVVFAC 292 (913)
Q Consensus 220 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~-----~~~~~~~~~~~s~iivTT 292 (913)
+...... +....+....... ..........+. ..+++.+||+||+.....- ..+..-....+..||+++
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~ 186 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNM---SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILIC 186 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBC---CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEE
T ss_pred CCcchHH-HHHHHHHHHhccc---cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEE
Confidence 5444433 2222222211110 000000000001 1357889999999864221 111100112344566666
Q ss_pred echh---hhhc--CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC-cHHHHHHHHHHhhcC--CCh
Q 045843 293 IFRN---ICGQ--IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGG-MPHMIKLIGSSLANV--SNP 364 (913)
Q Consensus 293 R~~~---v~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~~~~~~l~~~--~~~ 364 (913)
.... +... ....+.+++++.++..+.+.+.+....-. --++....|++.++| ++-|+..+..+..+. .+.
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~--i~~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~ 264 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK--LDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINH 264 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCT
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCch
Confidence 5433 1111 45578999999999999988776433101 112357788999999 455566554433222 344
Q ss_pred HHHHHHHH
Q 045843 365 AIWRDMLS 372 (913)
Q Consensus 365 ~~w~~~~~ 372 (913)
+.-+.++.
T Consensus 265 ~~v~~~~~ 272 (516)
T 1sxj_A 265 ENINEISK 272 (516)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 168
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.32 E-value=1.2e-05 Score=89.78 Aligned_cols=175 Identities=16% Similarity=0.206 Sum_probs=108.0
Q ss_pred cCccccccchHHHH---HHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-CCHHHHHHH
Q 045843 156 AKKMEEVPSLNKHL---KMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE-GNIRDIQEV 231 (913)
Q Consensus 156 ~~~~~~~~gr~~~~---~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~ 231 (913)
+..+.+++|.+..+ ..+...+.....+.+.++|++|+||||+|+.+.+... ..| +.++.. ....++...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~--~~f-----~~l~a~~~~~~~ir~~ 94 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN--ADV-----ERISAVTSGVKEIREA 94 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT--CEE-----EEEETTTCCHHHHHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC--CCe-----EEEEeccCCHHHHHHH
Confidence 34556788999988 7888888888888999999999999999999998764 222 333322 223222211
Q ss_pred HHHHccCCccCCChHHHHHHHH-HHHccCCeEEEEeCCCCcc--ccccccCC-CCCCCceEEE-Eeechh--hhhc---C
Q 045843 232 LLKRLDLRAEDHNIDQRADMIS-EELKDKSYVLFLDEVSTEI--NLRDIGIH-DEHKNGKVVF-ACIFRN--ICGQ---I 301 (913)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~--~~~~~~~~-~~~~~s~iiv-TTR~~~--v~~~---~ 301 (913)
+ . ... ....+++.+|++|++.... ..+.+... .. ....+|. ||.+.. +... .
T Consensus 95 ~-~----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 95 I-E----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp H-H----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTT
T ss_pred H-H----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCc
Confidence 1 1 111 1124678999999998742 22222111 22 2233443 444432 1111 4
Q ss_pred CceEEcccCChHHHHHHHHHHhCCCC-----CCCCChHHHHHHHHHHhCCcHHHHHHHH
Q 045843 302 DEEVNVQRLSGKDAQKLFWETVGVQL-----KDCRDIKPVARLIINECGGMPHMIKLIG 355 (913)
Q Consensus 302 ~~~~~l~~L~~~~~~~Lf~~~~~~~~-----~~~~~~~~~~~~I~~~c~GlPlai~~~~ 355 (913)
..++.+++++.++...++.+.+.... ....--++..+.|++.++|.+-.+..+-
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 45889999999999999988865421 1122345677889999999886555443
No 169
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.30 E-value=5.1e-06 Score=87.61 Aligned_cols=177 Identities=17% Similarity=0.220 Sum_probs=103.9
Q ss_pred cccCccccccchHHHHHHHHHHHhc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeC
Q 045843 154 KHAKKMEEVPSLNKHLKMLQECLRN-------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVN 220 (913)
Q Consensus 154 ~~~~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (913)
.+...+.+++|.+..++.|.+.+.. .....+.|+|++|+|||++|+.+++... ..| +.+..+
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~--~~~---~~v~~~ 85 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN--ATF---IRVVGS 85 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--CEE---EEEEGG
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEehH
Confidence 3445566788999999999887732 3456799999999999999999998764 222 222222
Q ss_pred CCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc------------cc-ccc---c----CC
Q 045843 221 SEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI------------NL-RDI---G----IH 280 (913)
Q Consensus 221 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~~-~~~---~----~~ 280 (913)
.-. ....+.........+......++.+|+|||++... .. ..+ . ..
T Consensus 86 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 86 ELV--------------KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp GGC--------------CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred HHH--------------HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 210 00001111112222233334567899999997531 00 111 0 00
Q ss_pred CCCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCC-CCCCChHHHHHHHHHHhCC-cHHHH
Q 045843 281 DEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQL-KDCRDIKPVARLIINECGG-MPHMI 351 (913)
Q Consensus 281 ~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~I~~~c~G-lPlai 351 (913)
....+..||.||........ ....+.++..+.++..+++...+.... ..... ...+++.+.| .|-.+
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAEL 227 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHH
Confidence 22345667777765433221 234789999999999999998876541 12222 3566677776 45444
Q ss_pred HH
Q 045843 352 KL 353 (913)
Q Consensus 352 ~~ 353 (913)
..
T Consensus 228 ~~ 229 (285)
T 3h4m_A 228 KA 229 (285)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 170
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.28 E-value=2.1e-06 Score=87.97 Aligned_cols=171 Identities=11% Similarity=0.158 Sum_probs=104.7
Q ss_pred Cccccccch---HHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHH
Q 045843 157 KKMEEVPSL---NKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 157 ~~~~~~~gr---~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 233 (913)
..+.+++|. +..++.+..+........+.|+|++|+||||+|+.+++... .......|+.++...+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~~-------- 94 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHASI-------- 94 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGGGS--------
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHH--------
Confidence 344556663 35666666666655678899999999999999999998775 22334566665442110
Q ss_pred HHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc----cccccCC---CCCCCc-eEEEEeechhh--------
Q 045843 234 KRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN----LRDIGIH---DEHKNG-KVVFACIFRNI-------- 297 (913)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~~~---~~~~~s-~iivTTR~~~v-------- 297 (913)
+ .... +.+ .++.+||+||++.... .+.+... ....+. ++|+||+...-
T Consensus 95 --~---------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 95 --S---------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp --C---------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred --H---------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 0 0000 011 4567999999976432 1111100 011222 48888774321
Q ss_pred -hhc--CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHH
Q 045843 298 -CGQ--IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIG 355 (913)
Q Consensus 298 -~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 355 (913)
... ....+.+.+++.++..+++.+.+... ...--++....|++.++|.+-.+..+.
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMR--GLQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHT--TCCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 111 22789999999999999998876432 122335677889999999886665543
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.28 E-value=2.3e-06 Score=95.87 Aligned_cols=198 Identities=10% Similarity=0.125 Sum_probs=115.9
Q ss_pred ccccc-chH--HHHHHHHHHHhcCC-CcEEEEECCCCCcHHHHHHHHHHHhcccCCC--ceEEEEEeCCCCCHHHHHHHH
Q 045843 159 MEEVP-SLN--KHLKMLQECLRNVG-TKRICIWGPPGVGKTTIMENLHDAIGESRQF--DFIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 159 ~~~~~-gr~--~~~~~l~~~L~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i 232 (913)
+..|+ |.. .....+.......+ ...+.|+|++|+||||||+.+++... ..+ ...+++... .+..++
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~--~~~~~~~v~~v~~~------~~~~~~ 175 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITSE------KFLNDL 175 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH--HHCCSSCEEEEEHH------HHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HhCCCCeEEEeeHH------HHHHHH
Confidence 34555 533 33444444444433 67899999999999999999998764 222 123444332 334444
Q ss_pred HHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc---c-ccccCC---CCCCCceEEEEeechhh--------
Q 045843 233 LKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN---L-RDIGIH---DEHKNGKVVFACIFRNI-------- 297 (913)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~-~~~~~~---~~~~~s~iivTTR~~~v-------- 297 (913)
...+... . ...+.+.+..+.-+|++||++.... . +.+... ....|..||+||....-
T Consensus 176 ~~~~~~~----~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 176 VDSMKEG----K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHHHHTT----C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHHHHcc----c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 4443321 1 1223334444678999999976432 1 122111 13457788998876321
Q ss_pred -hhc--CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHH------hhcC-CChHHH
Q 045843 298 -CGQ--IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSS------LANV-SNPAIW 367 (913)
Q Consensus 298 -~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~------l~~~-~~~~~w 367 (913)
... .+..+.+++++.++-.+++.+.+.... ..--++....|++.++|.+-.+.-+... ..++ -+.+.+
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~--~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~ 325 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEH--GELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEA 325 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHT--CCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 111 346889999999999999988774321 1111245678889999998544332221 1222 566777
Q ss_pred HHHHHhh
Q 045843 368 RDMLSQL 374 (913)
Q Consensus 368 ~~~~~~l 374 (913)
+.++...
T Consensus 326 ~~~l~~~ 332 (440)
T 2z4s_A 326 ILLLKDF 332 (440)
T ss_dssp HHHTSTT
T ss_pred HHHHHHH
Confidence 7777654
No 172
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.21 E-value=5.1e-05 Score=80.40 Aligned_cols=177 Identities=15% Similarity=0.165 Sum_probs=103.2
Q ss_pred cCccccccchHHHHHHHHHHHhc------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRN------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG 223 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (913)
...+.+++|.+..++.+.+++.. ...+.+.|+|++|+||||+|+.+++... .. .+.+..+.-.
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~~---~~~i~~~~l~ 91 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--AT---FLNISAASLT 91 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--CE---EEEEESTTTS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CC---eEEeeHHHHh
Confidence 34556788999999999887732 2346889999999999999999998764 22 2233333211
Q ss_pred CHHHHHHHHHHHccCCccCCChHHHHHHH-HHHHccCCeEEEEeCCCCcccc---------c----cc-----cCCC--C
Q 045843 224 NIRDIQEVLLKRLDLRAEDHNIDQRADMI-SEELKDKSYVLFLDEVSTEINL---------R----DI-----GIHD--E 282 (913)
Q Consensus 224 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~~---------~----~~-----~~~~--~ 282 (913)
.... .........+ ......++.+|++|++.....- . .+ ..+. .
T Consensus 92 --------------~~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 92 --------------SKYV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp --------------SSSC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred --------------hccc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0001 1112222222 2233457789999999763110 0 01 1111 1
Q ss_pred CCCceEEEEeechhhhh-----cCCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH-HHHHH
Q 045843 283 HKNGKVVFACIFRNICG-----QIDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH-MIKLI 354 (913)
Q Consensus 283 ~~~s~iivTTR~~~v~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~ 354 (913)
..+..||.||....... .....+.+...+.++-..++...+.... .+--.+....|++.+.|.+- ++..+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG--SPLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS--CCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 13445666666543211 1456788888888888888887764321 11224566788999988775 44444
No 173
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.19 E-value=4.6e-05 Score=79.05 Aligned_cols=178 Identities=12% Similarity=0.135 Sum_probs=98.8
Q ss_pred ccccccchHHHHHHHHHHH---hc---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCH
Q 045843 158 KMEEVPSLNKHLKMLQECL---RN---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNI 225 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L---~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (913)
.+.+++|.+..++.+.+++ .. ...+.+.++|++|+|||++|+.+++... .. .+.+..+.-.+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~~~~~~~~~- 77 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--VP---FLAMAGAEFVE- 77 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--CC---EEEEETTTTSS-
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---EEEechHHHHh-
Confidence 4556789988887776654 21 2335688999999999999999998765 22 23333333211
Q ss_pred HHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc-------------ccc----cccC---C-CCCC
Q 045843 226 RDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI-------------NLR----DIGI---H-DEHK 284 (913)
Q Consensus 226 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~----~~~~---~-~~~~ 284 (913)
...+.........+.......+.+|++||++... ... .+.. . ....
T Consensus 78 -------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 78 -------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0001111122222333334567899999998641 111 1100 0 1233
Q ss_pred CceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH-HHHHHH
Q 045843 285 NGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH-MIKLIG 355 (913)
Q Consensus 285 ~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~ 355 (913)
+..||.||........ ....+.++..+.++-.+++...+.... ...........+++.+.|.+- .+..+.
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-LTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-CCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-CCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 4566666654432111 335788999999999999988764321 112223345778888888643 444433
No 174
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=6.2e-06 Score=89.94 Aligned_cols=192 Identities=14% Similarity=0.181 Sum_probs=111.2
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-ceEEEEEeCCCCCHHHHHHHHHHHc
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQF-DFIFWVTVNSEGNIRDIQEVLLKRL 236 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l 236 (913)
.+.+++|+++.++.+..++.....+.+.++|++|+||||+|+.+.+.......+ ...+.+..+.......+...+ ..+
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 113 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKV-KNF 113 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHH-HHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHH-HHH
Confidence 455688999999999999977765569999999999999999998875311111 112333333322333222211 111
Q ss_pred cCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--cccccC--CCCCCCceEEEEeechh-hhhc---CCceEEcc
Q 045843 237 DLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIGI--HDEHKNGKVVFACIFRN-ICGQ---IDEEVNVQ 308 (913)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~~--~~~~~~s~iivTTR~~~-v~~~---~~~~~~l~ 308 (913)
........... .....-.+++-+|++|++..... ...+.- .......++|++|.... +... ....+.+.
T Consensus 114 ~~~~~~~~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~ 190 (353)
T 1sxj_D 114 ARLTVSKPSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFK 190 (353)
T ss_dssp HHSCCCCCCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECC
T ss_pred hhhcccccchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeC
Confidence 10000000000 00001123556999999876432 222210 12234566777765432 2111 33488999
Q ss_pred cCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHH
Q 045843 309 RLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIG 355 (913)
Q Consensus 309 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 355 (913)
+++.++....+.+.+... ...--++..+.|++.++|.|-.+..+.
T Consensus 191 ~~~~~~~~~~l~~~~~~~--~~~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQE--NVKCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCCHHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999998876432 122335678899999999997655443
No 175
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.18 E-value=5.3e-05 Score=81.19 Aligned_cols=181 Identities=18% Similarity=0.240 Sum_probs=107.0
Q ss_pred ccccCccccccchHHHHHHHHHHHh------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeC
Q 045843 153 KKHAKKMEEVPSLNKHLKMLQECLR------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVN 220 (913)
Q Consensus 153 ~~~~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (913)
..|...+.+++|.+..++.|.+++. ....+.+.++|++|+|||++|+.+++... ..| +.+..+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~---~~v~~~ 85 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STF---FSVSSS 85 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CEE---EEEEHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CCE---EEEchH
Confidence 3445556778999999999988772 11235799999999999999999998864 222 222221
Q ss_pred CCCCHHHHHHHHHHHccCCccCCChHHHHHHHHH-HHccCCeEEEEeCCCCccc-------------ccccc-----CCC
Q 045843 221 SEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISE-ELKDKSYVLFLDEVSTEIN-------------LRDIG-----IHD 281 (913)
Q Consensus 221 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~-------------~~~~~-----~~~ 281 (913)
++ .. ... ...+.....+.+ .-..++.+|+|||+..... ...+. ...
T Consensus 86 ------~l----~~----~~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 86 ------DL----VS----KWM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp ------HH----HT----TTG-GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred ------HH----hh----ccc-chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 11 11 000 111222222222 2345678999999985321 11110 102
Q ss_pred CCCCceEEEEeechhhhhc-----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC-cHHHHHHHH
Q 045843 282 EHKNGKVVFACIFRNICGQ-----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGG-MPHMIKLIG 355 (913)
Q Consensus 282 ~~~~s~iivTTR~~~v~~~-----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~~~~ 355 (913)
...+..||.||........ ....+.+...+.++-.+++...+.... ...-......|++.+.| .+-.|..+.
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP--CVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC--CCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3344556656665332221 556788999999999999998876531 11124466788888887 454454443
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=5.9e-07 Score=85.50 Aligned_cols=63 Identities=17% Similarity=0.299 Sum_probs=27.4
Q ss_pred CCceEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhc----CCCcEEEEccCchhH
Q 045843 750 HLKKLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQL----NQIQYLQVEDCKEME 816 (913)
Q Consensus 750 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l----~~L~~L~l~~~~~l~ 816 (913)
.|+.|+++++. ++....... ..+++|+.|+|++|..+++- ....+..+ ++|++|+|++|..++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L--~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM--EGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG--TTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCC-ccHHHHHHh--cCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 45555555544 332211111 24555555555555555443 11223322 245555555554443
No 177
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.15 E-value=0.00011 Score=78.64 Aligned_cols=181 Identities=14% Similarity=0.184 Sum_probs=104.8
Q ss_pred ccCccccccchHHHHHHHHHHHh------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC
Q 045843 155 HAKKMEEVPSLNKHLKMLQECLR------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE 222 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (913)
|.....+++|.+..++.|.+.+. ....+.|.++|++|+|||+||+.+++...- .. .+.+..+.-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~~---~~~i~~~~l 82 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-ST---FFSISSSDL 82 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-CE---EEEEECCSS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-Cc---EEEEEhHHH
Confidence 44456678899998888887662 122367899999999999999999987620 11 222333321
Q ss_pred CCHHHHHHHHHHHccCCccCCChHHHHHHHHH-HHccCCeEEEEeCCCCccc---------c----cccc-----CCCCC
Q 045843 223 GNIRDIQEVLLKRLDLRAEDHNIDQRADMISE-ELKDKSYVLFLDEVSTEIN---------L----RDIG-----IHDEH 283 (913)
Q Consensus 223 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~---------~----~~~~-----~~~~~ 283 (913)
. ....+.. +.....+.+ .-..++.+|++||++.... . ..+. .....
T Consensus 83 ~--------------~~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 83 V--------------SKWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp C--------------CSSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred H--------------hhhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 1 1111112 222222222 2346788999999986411 0 0010 00123
Q ss_pred CCceEEEEeechhhhhc-----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCc-HHHHHHHHH
Q 045843 284 KNGKVVFACIFRNICGQ-----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGM-PHMIKLIGS 356 (913)
Q Consensus 284 ~~s~iivTTR~~~v~~~-----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~~~~ 356 (913)
.+..||.||........ ....+.++..+.++-.+++...+.... ..--......|++.+.|. +-.+..+..
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ--NSLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC--BCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34455556654322111 456788999999999999988775431 111245667888998887 444555443
No 178
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.14 E-value=0.00025 Score=76.58 Aligned_cols=169 Identities=12% Similarity=0.094 Sum_probs=102.7
Q ss_pred ccccccchHHHHHHHHHHHhc-----CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRN-----VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 232 (913)
.+.+++|++..++.+..++.. .....+.|+|++|+|||++|+.+++... ..| +.+..+.......+.. +
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~~~~-~ 100 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS--ANI---KTTAAPMIEKSGDLAA-I 100 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT--CCE---EEEEGGGCCSHHHHHH-H
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CCe---EEecchhccchhHHHH-H
Confidence 556789999999999888842 3456789999999999999999988764 332 2233222211111111 1
Q ss_pred HHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--cccc-------cC-------------CCCCCCceEEE
Q 045843 233 LKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDI-------GI-------------HDEHKNGKVVF 290 (913)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~-------~~-------------~~~~~~s~iiv 290 (913)
+.. ..+..+|+||++..... ...+ .. ....++..+|.
T Consensus 101 ~~~---------------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 101 LTN---------------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp HHT---------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred HHh---------------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 111 23567888888876421 1100 00 00111345666
Q ss_pred Eeechhhhhc-----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHH
Q 045843 291 ACIFRNICGQ-----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIG 355 (913)
Q Consensus 291 TTR~~~v~~~-----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~ 355 (913)
||........ ....+.+.+++.++...++.+.+... ...--.+..+.|++.+.|.|-.+..+.
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~--~~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKL--NKTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT--TCEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 6655332111 34689999999999999998876432 111235677888999999995554433
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=1.1e-05 Score=87.92 Aligned_cols=192 Identities=16% Similarity=0.177 Sum_probs=105.7
Q ss_pred ccccccchHHHHHHHHHHH-hcCCCcEEEEECCCCCcHHHHHHHHHHHhcccC----CCce-------------------
Q 045843 158 KMEEVPSLNKHLKMLQECL-RNVGTKRICIWGPPGVGKTTIMENLHDAIGESR----QFDF------------------- 213 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L-~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~------------------- 213 (913)
.+.+++|.+..++.+.+++ .....+.+.|+|+.|+||||+|+.+.+...-.. .++.
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 4556789999999999988 665555599999999999999999988532101 0010
Q ss_pred -EEEEEeCCCC-CHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--ccccc--CCCCCCCce
Q 045843 214 -IFWVTVNSEG-NIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGK 287 (913)
Q Consensus 214 -~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~ 287 (913)
.+.+..+... ......+++++.+.....- .... .+. .+.+++-++|+|++...+. ...+. +.....+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQV---DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEE
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhccc---cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCE
Confidence 1111111100 0000122222222111000 0000 000 0234677999999987422 11111 001234577
Q ss_pred EEEEeechh-hhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHhCCcHHHHHHHHH
Q 045843 288 VVFACIFRN-ICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDI-KPVARLIINECGGMPHMIKLIGS 356 (913)
Q Consensus 288 iivTTR~~~-v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~-~~~~~~I~~~c~GlPlai~~~~~ 356 (913)
+|++|.... +... ....+.+.+++.++..+.+.+.+.... ..-- ++....|++.++|.+-.+..+..
T Consensus 167 ~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 167 LIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER--IQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT--CEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC--CCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 887776543 2221 446899999999999999988764321 1111 35678899999999866555443
No 180
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.11 E-value=9.4e-05 Score=81.85 Aligned_cols=292 Identities=14% Similarity=0.152 Sum_probs=159.3
Q ss_pred ccccCchHHHhcCCcccEEeccCCcccccCc-cccCccCcceeecCCccCccccCh-hhhccccCCEEecCCCcCCcCCC
Q 045843 539 SLAELPASFFGYMCSLQLLDLHDTKIKLLPS-SISSLTNLKALFLNNCCQLMRLPA-EVGDLHNLEILDLSHTGICCLPS 616 (913)
Q Consensus 539 ~l~~l~~~~f~~l~~Lr~LdLs~~~i~~lp~-~i~~L~~L~~L~L~~c~~l~~lP~-~i~~L~~L~~L~L~~~~~~~lp~ 616 (913)
.++.+....|.++.+|+.+.|.. .++.+++ .|.++.+|+.++|.+ .+..++. .+.++.+|+.+.+..+ +..++.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCc-eeeecc
Confidence 46778888899999999999975 4887864 588999999999976 3666654 4778888888776543 222221
Q ss_pred cc----c---------ccccc----ccccccceeecccccccccCCCCCccceeeeeccccCCCCCccccccCCccccce
Q 045843 617 EI----D---------LTTLC----FYFPNVGLLQNFINASKSWNGNSNFRSFSILVGYNQRSSPHMEFDFSGCSAEKYL 679 (913)
Q Consensus 617 ~i----~---------L~~L~----~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 679 (913)
.. . ...+. ..+.+|+.+.+..... .+ + ...+..|..+..+
T Consensus 134 ~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~----------~I----~---------~~~F~~c~~L~~i 190 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSME----------TL----H---------NGLFSGCGKLKSI 190 (394)
T ss_dssp TTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC----------EE----C---------TTTTTTCTTCCBC
T ss_pred eeeecccccccccCccccccchhhhcccCCCcEEecCCccc----------ee----c---------cccccCCCCceEE
Confidence 11 0 00000 0112444444432200 00 0 0012222222222
Q ss_pred eecC-CCCCch------hhHHHhcccccccccccccccccCccccCcccCcceEEecccCCceEeecCCCcccccccCCc
Q 045843 680 RFAD-GEGFPD------AVVKILEQACAFELIGHRTAANLSDFGANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLK 752 (913)
Q Consensus 680 ~l~~-l~~l~~------~~L~~L~i~~~l~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~ 752 (913)
.++. +..+++ ..|+.+.+. .....+.+. .....+|+.+.+... ...+-...+. .+..|+
T Consensus 191 ~l~~~~~~I~~~~F~~~~~L~~i~~~--------~~~~~i~~~-~~~~~~l~~i~ip~~--~~~i~~~~f~---~~~~l~ 256 (394)
T 4fs7_A 191 KLPRNLKIIRDYCFAECILLENMEFP--------NSLYYLGDF-ALSKTGVKNIIIPDS--FTELGKSVFY---GCTDLE 256 (394)
T ss_dssp CCCTTCCEECTTTTTTCTTCCBCCCC--------TTCCEECTT-TTTTCCCCEEEECTT--CCEECSSTTT---TCSSCC
T ss_pred EcCCCceEeCchhhccccccceeecC--------CCceEeehh-hcccCCCceEEECCC--ceeccccccc---ccccce
Confidence 2210 111100 011111110 001111111 122356777776532 2122222244 567777
Q ss_pred eEecccccccchhccccccccccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCc
Q 045843 753 KLHISHLPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPK 832 (913)
Q Consensus 753 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~ 832 (913)
.+.+..-. ... +......+++|+.+.+... .+ +...+.++.+|+.+.+.+. ++.|.. ..+.++.+
T Consensus 257 ~~~~~~~~--~~i--~~~~F~~~~~l~~~~~~~~-~i----~~~~F~~~~~L~~i~l~~~--i~~I~~----~aF~~c~~ 321 (394)
T 4fs7_A 257 SISIQNNK--LRI--GGSLFYNCSGLKKVIYGSV-IV----PEKTFYGCSSLTEVKLLDS--VKFIGE----EAFESCTS 321 (394)
T ss_dssp EEEECCTT--CEE--CSCTTTTCTTCCEEEECSS-EE----CTTTTTTCTTCCEEEECTT--CCEECT----TTTTTCTT
T ss_pred eEEcCCCc--cee--eccccccccccceeccCce-ee----ccccccccccccccccccc--cceech----hhhcCCCC
Confidence 77774311 111 1111235667777776552 21 2245678899999999643 454532 24566788
Q ss_pred cceeecccccccccccccCccCCCCccEEeeecCcccccccCC-CcCCCCcceeeeccc
Q 045843 833 LKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPST-IENASKLRGIQCNQA 890 (913)
Q Consensus 833 L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~~-~~~l~~L~~l~~~~~ 890 (913)
|+.+.|.+ .++.+....+..+++|+.+.+.. +++.++.. +.++++|+.+.+...
T Consensus 322 L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 322 LVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence 99998864 47777765677889999999965 48888765 669999999988643
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.09 E-value=5.5e-05 Score=82.28 Aligned_cols=178 Identities=13% Similarity=0.171 Sum_probs=103.7
Q ss_pred CccccccchHHHHHHHHHHHh------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC
Q 045843 157 KKMEEVPSLNKHLKMLQECLR------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN 224 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (913)
..+.+++|.+..++.|.+.+. ....+.+.|+|++|+|||++|+.+++... .. .+.+..+.-..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~---~~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--AT---FFSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--CE---EEEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--Ce---EEEEehHHhhc
Confidence 345567899999999988773 23456899999999999999999998764 22 23344332111
Q ss_pred HHHHHHHHHHHccCCccCCChHHHHHHHHH-HHccCCeEEEEeCCCCccc-------------ccccc-----CC-CCCC
Q 045843 225 IRDIQEVLLKRLDLRAEDHNIDQRADMISE-ELKDKSYVLFLDEVSTEIN-------------LRDIG-----IH-DEHK 284 (913)
Q Consensus 225 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~-------------~~~~~-----~~-~~~~ 284 (913)
... .........+.. .-..++.+|+|||+..... ...+. .. ....
T Consensus 156 --------------~~~-g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 --------------KWV-GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp --------------SST-THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred --------------ccc-chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 000 011112222222 2235778999999854210 11110 10 1123
Q ss_pred CceEEEEeechhhhhc-----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC-cHHHHHHHHH
Q 045843 285 NGKVVFACIFRNICGQ-----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGG-MPHMIKLIGS 356 (913)
Q Consensus 285 ~s~iivTTR~~~v~~~-----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~~~~~ 356 (913)
+..||.||........ ....+.+...+.++..+++...+... ...-..+....|++.+.| .+-.+..+..
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~--~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKE--QCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTS--CBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhc--CCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4455556654322111 44578899999999999988776432 111224567889999988 5555655543
No 182
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.08 E-value=2.7e-05 Score=85.37 Aligned_cols=194 Identities=15% Similarity=0.100 Sum_probs=103.8
Q ss_pred ccCccccccchHHHHHH---HHHHHhcCCC--cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEe----CCCCCH
Q 045843 155 HAKKMEEVPSLNKHLKM---LQECLRNVGT--KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTV----NSEGNI 225 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~---l~~~L~~~~~--~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~~~ 225 (913)
|...+.+++|++..++. +.+.+..... +.+.|+|++|+|||++|+.+.+.......| +.+.. +.....
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSK 115 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCH
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccch
Confidence 33335678999988766 4455544443 489999999999999999999987622222 12221 122333
Q ss_pred HHHHHHHHHHccC-------------------------------CccCCChHHHHHHHHHHH-----ccC----CeEEEE
Q 045843 226 RDIQEVLLKRLDL-------------------------------RAEDHNIDQRADMISEEL-----KDK----SYVLFL 265 (913)
Q Consensus 226 ~~i~~~i~~~l~~-------------------------------~~~~~~~~~~~~~l~~~l-----~~k----r~LlVl 265 (913)
............. ...+.........+.+.. .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 3343333332110 000011222222222221 233 359999
Q ss_pred eCCCCccc--ccccc-CCCCCCCceEEEEeec-------------hhhhhc---CCceEEcccCChHHHHHHHHHHhCCC
Q 045843 266 DEVSTEIN--LRDIG-IHDEHKNGKVVFACIF-------------RNICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQ 326 (913)
Q Consensus 266 Ddv~~~~~--~~~~~-~~~~~~~s~iivTTR~-------------~~v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~ 326 (913)
|++..... ...+. .........++++|.. ..+... ....+.+.+++.++..+++.+.+...
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hhccccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99987421 11111 0111222234444431 111111 23458999999999999999876542
Q ss_pred CCCCCChHHHHHHHHHHhC-CcHHHHHH
Q 045843 327 LKDCRDIKPVARLIINECG-GMPHMIKL 353 (913)
Q Consensus 327 ~~~~~~~~~~~~~I~~~c~-GlPlai~~ 353 (913)
...--.+....|++.+. |.|-.+..
T Consensus 276 --~~~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 276 --DVEMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp --TCCBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred --CCCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 12233567788899887 77754443
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.06 E-value=3.2e-05 Score=80.78 Aligned_cols=188 Identities=11% Similarity=0.156 Sum_probs=100.3
Q ss_pred ccchHHHHHHHHH-------HHh---cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHH
Q 045843 162 VPSLNKHLKMLQE-------CLR---NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 162 ~~gr~~~~~~l~~-------~L~---~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
++|....++++++ .+. ......+.|+|++|+|||++|+.+++... ..| +.+..+..
T Consensus 35 ~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~--~~~---~~i~~~~~--------- 100 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--FPF---IKICSPDK--------- 100 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--CSE---EEEECGGG---------
T ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEeCHHH---------
Confidence 4566666555554 332 34456889999999999999999998754 222 22222211
Q ss_pred HHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc-----------cc-cccc--CC---CCCCCceEEEEeec
Q 045843 232 LLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI-----------NL-RDIG--IH---DEHKNGKVVFACIF 294 (913)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~-~~~~--~~---~~~~~s~iivTTR~ 294 (913)
+...............+......+..+|+|||+.... .+ ..+. .. .......||.||..
T Consensus 101 ----~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 101 ----MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR 176 (272)
T ss_dssp ----CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC
T ss_pred ----hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCC
Confidence 0000000001112222333334678899999986520 01 1110 00 12223346666765
Q ss_pred hhhhhc------CCceEEcccCCh-HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC------cHHHHHHHHHHhhcC
Q 045843 295 RNICGQ------IDEEVNVQRLSG-KDAQKLFWETVGVQLKDCRDIKPVARLIINECGG------MPHMIKLIGSSLANV 361 (913)
Q Consensus 295 ~~v~~~------~~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~G------lPlai~~~~~~l~~~ 361 (913)
...... ....+.+++++. ++-..++.+... --.+....|++.+.| +.-++..+-.+...
T Consensus 177 ~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~- 248 (272)
T 1d2n_A 177 KDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-------FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM- 248 (272)
T ss_dssp HHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-------SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS-
T ss_pred hhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-------CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh-
Confidence 532111 356789999988 676676665321 124567788888887 55555555444332
Q ss_pred CChHHHHHHHHhhc
Q 045843 362 SNPAIWRDMLSQLR 375 (913)
Q Consensus 362 ~~~~~w~~~~~~l~ 375 (913)
.....++.++..+.
T Consensus 249 ~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 249 DPEYRVRKFLALLR 262 (272)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 24455666555443
No 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.01 E-value=0.00017 Score=78.32 Aligned_cols=179 Identities=17% Similarity=0.203 Sum_probs=102.7
Q ss_pred cCccccccchHHHHHHHHHHHhc------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC
Q 045843 156 AKKMEEVPSLNKHLKMLQECLRN------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG 223 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~~------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (913)
...+.+++|.+..++.|.+.+.. ...+-|.++|++|+|||+||+.+++... ..| +.+..+
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~---~~v~~~--- 118 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STF---FSVSSS--- 118 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CEE---EEEEHH---
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEeeHH---
Confidence 34556788999999988887621 1234688999999999999999998874 222 222221
Q ss_pred CHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc-------------ccccc-----CCCCCCC
Q 045843 224 NIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN-------------LRDIG-----IHDEHKN 285 (913)
Q Consensus 224 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------------~~~~~-----~~~~~~~ 285 (913)
++. .. ..+.........+...-..++.+|+|||++.... ...+. ......+
T Consensus 119 ---~l~----~~----~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 ---DLV----SK----WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp ---HHH----SC----C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred ---HHh----hh----hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 111 10 0111112222222222345789999999986321 11110 0012334
Q ss_pred ceEEEEeechhhh-----hcCCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC-cHHHHHHHH
Q 045843 286 GKVVFACIFRNIC-----GQIDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGG-MPHMIKLIG 355 (913)
Q Consensus 286 s~iivTTR~~~v~-----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~G-lPlai~~~~ 355 (913)
..||.||...... ......+.+...+.++-.+++...+..... .--......|++.+.| .+-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5556566544221 115567889999999999999888764311 1124456788899988 454444443
No 185
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.00 E-value=0.00014 Score=80.23 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=102.7
Q ss_pred ccCccccccchHHHHHHHHHHHhc------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC
Q 045843 155 HAKKMEEVPSLNKHLKMLQECLRN------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE 222 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~l~~~L~~------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (913)
+...+.+++|.+..++.|.+++.. ...+.+.|+|++|+|||++|+.+++... .. .+.+..+.-
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~~---~~~v~~~~l 184 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--AT---FFNISAASL 184 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--CE---EEEECSCCC
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--Cc---EEEeeHHHh
Confidence 344566789999999999888721 2346899999999999999999988754 21 222322221
Q ss_pred CCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc--------c-----ccccc-----CC-CCC
Q 045843 223 GNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI--------N-----LRDIG-----IH-DEH 283 (913)
Q Consensus 223 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~-----~~~~~-----~~-~~~ 283 (913)
.. . ..+.........+...-..++.+|+|||++... . ...+. .. ...
T Consensus 185 ~~--~------------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 185 TS--K------------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred hc--c------------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 11 0 001111111222222223466899999997531 0 00110 00 112
Q ss_pred CCceEEEEeechhhhhc-----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH-HHHHHH
Q 045843 284 KNGKVVFACIFRNICGQ-----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH-MIKLIG 355 (913)
Q Consensus 284 ~~s~iivTTR~~~v~~~-----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-ai~~~~ 355 (913)
....||.||........ ....+.+...+.++-.+++...+... ...-..+....|++.+.|..- ++..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~--~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQ--GSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTS--CCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 33455556654322111 34578899999999999998887543 122234567889999988543 554443
No 186
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.98 E-value=2e-05 Score=84.13 Aligned_cols=149 Identities=16% Similarity=0.175 Sum_probs=85.4
Q ss_pred cccchHHHHHHHHHHHh---------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCH
Q 045843 161 EVPSLNKHLKMLQECLR---------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNI 225 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~---------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (913)
+++|.+..++.|.+++. ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 46798888888876652 234457999999999999999988877643222211223333321
Q ss_pred HHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc-----------ccccccC--CCCCCCceEEEEe
Q 045843 226 RDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI-----------NLRDIGI--HDEHKNGKVVFAC 292 (913)
Q Consensus 226 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~~--~~~~~~s~iivTT 292 (913)
.+.....+.........+.. .+.-+|++||++... ....+.- .....+..||+||
T Consensus 109 ---------~l~~~~~g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 109 ---------DLVGQYIGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp ---------GTCCSSTTCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred ---------HhhhhcccccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 11111111111111112221 245699999998431 1111111 1334466788887
Q ss_pred echhh----------hhcCCceEEcccCChHHHHHHHHHHhC
Q 045843 293 IFRNI----------CGQIDEEVNVQRLSGKDAQKLFWETVG 324 (913)
Q Consensus 293 R~~~v----------~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 324 (913)
..... .......+.+++++.++-.+++.+.+.
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 65322 111447899999999999999887764
No 187
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.97 E-value=0.00018 Score=76.18 Aligned_cols=172 Identities=16% Similarity=0.248 Sum_probs=100.0
Q ss_pred cccCccccccchHHHHHHHHHHHhc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeC
Q 045843 154 KHAKKMEEVPSLNKHLKMLQECLRN-------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVN 220 (913)
Q Consensus 154 ~~~~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (913)
.|.....+++|.+..++++.+++.. ...+.+.++|++|+|||++|+.+++... .. ++.++
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~-----~i~v~ 81 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--AN-----FISIK 81 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CE-----EEEEC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CC-----EEEEE
Confidence 3444556788999988888877632 3456799999999999999999998764 22 22332
Q ss_pred CCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc------------c----ccccc----CC
Q 045843 221 SEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI------------N----LRDIG----IH 280 (913)
Q Consensus 221 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~~~----~~ 280 (913)
..++..... +. ........+.......+.+|++|++.... . ...+. -.
T Consensus 82 ----~~~l~~~~~---g~-----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 82 ----GPELLTMWF---GE-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp ----HHHHHHHHH---TT-----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred ----hHHHHhhhc---Cc-----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 223322221 11 11222233333334578999999997421 0 01110 00
Q ss_pred CCCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCC-CCCCChHHHHHHHHHHhCCcH
Q 045843 281 DEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQL-KDCRDIKPVARLIINECGGMP 348 (913)
Q Consensus 281 ~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~I~~~c~GlP 348 (913)
....+..||.||........ ....+.+...+.++-.+++...+.... ....++ ..+++.+.|.|
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~s 221 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFS 221 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCC
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCC
Confidence 12334567777765432111 345789999999999999988775431 122233 34555666665
No 188
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.95 E-value=0.0002 Score=80.14 Aligned_cols=181 Identities=14% Similarity=0.228 Sum_probs=103.3
Q ss_pred ccCccccccchHHHHHHHHHHHh------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC
Q 045843 155 HAKKMEEVPSLNKHLKMLQECLR------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE 222 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (913)
+...+.+++|.+..++.|.+.+. ....+.|.++|++|+|||+||+.+++... . .-++.++..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~----~~~~~v~~~ 202 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--N----STFFSISSS 202 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--S----SEEEEECCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--C----CCEEEEeHH
Confidence 34456678899999999888762 12346899999999999999999998762 1 123333332
Q ss_pred CCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc---------c----ccccCC-C----CCC
Q 045843 223 GNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN---------L----RDIGIH-D----EHK 284 (913)
Q Consensus 223 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---------~----~~~~~~-~----~~~ 284 (913)
+ +.... .+. ....... .+...-..++.+|+||++..... . ..+... . ...
T Consensus 203 -~---l~~~~---~g~--~~~~~~~---~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 203 -D---LVSKW---LGE--SEKLVKN---LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ------------------CCCTHHH---HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred -H---HHhhh---cch--HHHHHHH---HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 1 11100 010 0111121 12222245788999999986410 0 011111 1 234
Q ss_pred CceEEEEeechhhhhc-----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCc-HHHHHHHH
Q 045843 285 NGKVVFACIFRNICGQ-----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGM-PHMIKLIG 355 (913)
Q Consensus 285 ~s~iivTTR~~~v~~~-----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~Gl-Plai~~~~ 355 (913)
+..||.||........ ....+.+...+.++-..+|...+..... .--......|++.+.|. +-.|..+.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566666655432211 4457888888888888999887754311 11234567888888884 44444443
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=9.3e-05 Score=80.01 Aligned_cols=172 Identities=13% Similarity=0.206 Sum_probs=103.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCc-eEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFD-FIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.+..++..++.+.+.++|+.|+||||+|+.+++...- ..+. ....+..+.......
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~-------- 92 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDV-------- 92 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHH--------
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHH--------
Confidence 345567899999999998888777666999999999999999999987531 1111 122222222112222
Q ss_pred ccCCccCCChHHHHHHHHHHH------ccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEEEeechh-hhhc---C
Q 045843 236 LDLRAEDHNIDQRADMISEEL------KDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVFACIFRN-ICGQ---I 301 (913)
Q Consensus 236 l~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iivTTR~~~-v~~~---~ 301 (913)
....+.... .+.+-++|+|++.... ..+.+.. ......+.+|++|.... +... .
T Consensus 93 ------------ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR 160 (340)
T 1sxj_C 93 ------------VRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160 (340)
T ss_dssp ------------HHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred ------------HHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh
Confidence 111222221 1347789999987532 1222210 02234556777665432 2111 3
Q ss_pred CceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHH
Q 045843 302 DEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMI 351 (913)
Q Consensus 302 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 351 (913)
...+.+.+++.++..+.+.+.+... ...--++..+.|++.++|.+--+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~--~~~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 161 CTRFRFQPLPQEAIERRIANVLVHE--KLKLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTT--TCCBCHHHHHHHHHHHTTCHHHH
T ss_pred ceeEeccCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHH
Confidence 4578999999999988888766322 11122456788889999988643
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.91 E-value=1.5e-05 Score=77.70 Aligned_cols=49 Identities=29% Similarity=0.392 Sum_probs=42.6
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+..++||+.+++.+.+.+.......+.|+|++|+||||+|+.+++...
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999777677889999999999999999998763
No 191
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.89 E-value=0.00012 Score=78.57 Aligned_cols=169 Identities=12% Similarity=0.067 Sum_probs=100.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCC-cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGT-KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
..+.+++|.+..++.+.+++..... .++.+.|++|+|||++|+.+++... ...+.+..+.. ....+..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~~i~~----- 91 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KIDFVRG----- 91 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHHHHHT-----
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHHHHHH-----
Confidence 4456788999999999999976654 4667778899999999999998763 12334443332 2222211
Q ss_pred ccCCccCCChHHHHHHHHHHH-----ccCCeEEEEeCCCCcc---ccccccC--CCCCCCceEEEEeechhh-hhc---C
Q 045843 236 LDLRAEDHNIDQRADMISEEL-----KDKSYVLFLDEVSTEI---NLRDIGI--HDEHKNGKVVFACIFRNI-CGQ---I 301 (913)
Q Consensus 236 l~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~---~~~~~~~--~~~~~~s~iivTTR~~~v-~~~---~ 301 (913)
.+.+.. .+++-+||+||+.... ..+.+.. .....+..+|+||....- ... .
T Consensus 92 ---------------~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 ---------------PLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp ---------------HHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred ---------------HHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 122221 2367899999998754 1222210 012245678887776442 111 3
Q ss_pred CceEEcccCChHHHHHHH-------HHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHH
Q 045843 302 DEEVNVQRLSGKDAQKLF-------WETVGVQLKDCRDIKPVARLIINECGGMPHMIK 352 (913)
Q Consensus 302 ~~~~~l~~L~~~~~~~Lf-------~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 352 (913)
...+.+++++.++-.+++ .+.+....-..++ .+....|++.++|.+-.+.
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHHHH
Confidence 457999999988743332 2222211101111 3677888999988775433
No 192
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=8.1e-06 Score=77.66 Aligned_cols=38 Identities=11% Similarity=0.258 Sum_probs=17.4
Q ss_pred cccEEeeccCccccccCchHHHhhcCCCcEEEEccCchh
Q 045843 777 MLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEM 815 (913)
Q Consensus 777 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l 815 (913)
+|++|+|++|+++++- ....+.++++|+.|+|++|+.+
T Consensus 115 ~L~~L~Ls~C~~ITD~-Gl~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDK-GIIALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp HCCEEEEESCTTCCHH-HHHHGGGCTTCCEEEEESCTTC
T ss_pred CCCEEEcCCCCcCCHH-HHHHHhcCCCCCEEECCCCCCC
Confidence 4555555555544443 1133344445555555544443
No 193
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00031 Score=75.90 Aligned_cols=170 Identities=17% Similarity=0.230 Sum_probs=100.4
Q ss_pred cccCccccccchHHHHHHHHHHHh-------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeC
Q 045843 154 KHAKKMEEVPSLNKHLKMLQECLR-------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVN 220 (913)
Q Consensus 154 ~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (913)
.|...+.++.|.++.+++|.+.+. -...+-|-++|++|+|||.||+++++... ..| +.|..+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--~~f---~~v~~s 216 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--CKF---IRVSGA 216 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--CEE---EEEEGG
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--CCc---eEEEhH
Confidence 344556678899998888877652 12346789999999999999999999876 333 233333
Q ss_pred CCCCHHHHHHHHHHHccCCccCCChHHHHHHHH-HHHccCCeEEEEeCCCCccc----------cc------ccc----C
Q 045843 221 SEGNIRDIQEVLLKRLDLRAEDHNIDQRADMIS-EELKDKSYVLFLDEVSTEIN----------LR------DIG----I 279 (913)
Q Consensus 221 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~----------~~------~~~----~ 279 (913)
.-.+ ..-+ +.+.....+. ..-+..+.+|++|+++.... .. .+. -
T Consensus 217 ~l~s--------------k~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 217 ELVQ--------------KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp GGSC--------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred Hhhc--------------cccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 2111 1111 1111222222 22245789999999986310 00 000 0
Q ss_pred CCCCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCc
Q 045843 280 HDEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 280 ~~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~Gl 347 (913)
.....+-.||.||...+.... .+..+.++.-+.++-.++|+.+.... .....++ ..|++++.|.
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~ 353 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGC 353 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSC
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCC
Confidence 023344456667765443222 56789999889888899998776543 2222333 5566777765
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.87 E-value=9.5e-05 Score=79.34 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcC--CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCC
Q 045843 167 KHLKMLQECLRNV--GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHN 244 (913)
Q Consensus 167 ~~~~~l~~~L~~~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~ 244 (913)
.....+..+...+ ....+.|+|++|+||||||+.+++..... . ...+++.. .++...+...+.. ..
T Consensus 21 ~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~------~~~~~~~~~~~~~----~~ 88 (324)
T 1l8q_A 21 LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSA------DDFAQAMVEHLKK----GT 88 (324)
T ss_dssp HHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEH------HHHHHHHHHHHHH----TC
T ss_pred HHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEH------HHHHHHHHHHHHc----Cc
Confidence 3344555555443 34689999999999999999999876421 1 12344433 2333333333221 01
Q ss_pred hHHHHHHHHHHHccCCeEEEEeCCCCccc---cc-cccCC---CCCCCceEEEEeechhh-----hhc------CCceEE
Q 045843 245 IDQRADMISEELKDKSYVLFLDEVSTEIN---LR-DIGIH---DEHKNGKVVFACIFRNI-----CGQ------IDEEVN 306 (913)
Q Consensus 245 ~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~-~~~~~---~~~~~s~iivTTR~~~v-----~~~------~~~~~~ 306 (913)
.. .+.+.+ .+.-+|++||+..... +. .+... ....+..||+||....- ... ....+.
T Consensus 89 ~~----~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~ 163 (324)
T 1l8q_A 89 IN----EFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVE 163 (324)
T ss_dssp HH----HHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEE
T ss_pred HH----HHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEE
Confidence 11 122222 2467999999977432 21 12111 12345678888864321 111 336789
Q ss_pred cccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHH
Q 045843 307 VQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPH 349 (913)
Q Consensus 307 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 349 (913)
+++ +.++..+++.+.+... ...--++....|++.+ |..-
T Consensus 164 l~~-~~~e~~~il~~~~~~~--~~~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEF--NLELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHT--TCCCCHHHHHHHHHHC-SSHH
T ss_pred eCC-CHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhC-CCHH
Confidence 999 9999999998887432 1122356677888888 6654
No 195
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=6.9e-06 Score=89.14 Aligned_cols=13 Identities=15% Similarity=0.534 Sum_probs=6.5
Q ss_pred cCCCcEEEEccCc
Q 045843 801 LNQIQYLQVEDCK 813 (913)
Q Consensus 801 l~~L~~L~l~~~~ 813 (913)
+|+|+.|.+++|.
T Consensus 251 ~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 251 FPNLKWLGIVDAE 263 (362)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCcCEEeCCCCC
Confidence 4555555554444
No 196
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00035 Score=76.45 Aligned_cols=170 Identities=19% Similarity=0.218 Sum_probs=98.3
Q ss_pred ccCccccccchHHHHHHHHHHHh-------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC
Q 045843 155 HAKKMEEVPSLNKHLKMLQECLR-------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS 221 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 221 (913)
|...+.++.|.++.+++|.+.+. -...+-|-++|++|+|||+||+++++... ..| +.+..+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--~~f---i~vs~s~ 278 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--ATF---IRVIGSE 278 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--CEE---EEEEGGG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--CCe---EEEEhHH
Confidence 33445578899998888877651 13457899999999999999999999876 222 2333222
Q ss_pred CCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--------cc------------cccCCC
Q 045843 222 EGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--------LR------------DIGIHD 281 (913)
Q Consensus 222 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------~~------------~~~~~~ 281 (913)
-. ...-+.....+.......-...+.+|++|+++.... .. .+-...
T Consensus 279 L~--------------sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 279 LV--------------QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp GC--------------CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred hh--------------cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 11 111111111111222222345789999999985310 00 000002
Q ss_pred CCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCc
Q 045843 282 EHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 282 ~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~Gl 347 (913)
...+-.||.||........ .+..+.++.-+.++-.++|+.++... .....++ ..|++.+.|.
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNS 414 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCC
Confidence 2334455666654433221 45688888888888889998777543 1122233 4567777775
No 197
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.79 E-value=0.00047 Score=74.08 Aligned_cols=166 Identities=10% Similarity=0.086 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHhcCCC-cEEEEECCCCCcHHHHHHHHHHHhcccC--------------------CCceEEEEEeC---
Q 045843 165 LNKHLKMLQECLRNVGT-KRICIWGPPGVGKTTIMENLHDAIGESR--------------------QFDFIFWVTVN--- 220 (913)
Q Consensus 165 r~~~~~~l~~~L~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs--- 220 (913)
.++..+.+...+..++. ..+.++|+.|+||||+|+.+.+...-.. +++. .++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccC
Confidence 45667778888776654 4689999999999999999988764221 1221 222211
Q ss_pred CCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--ccccc--CCCCCCCceEEEEeechh
Q 045843 221 SEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIG--IHDEHKNGKVVFACIFRN 296 (913)
Q Consensus 221 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~--~~~~~~~s~iivTTR~~~ 296 (913)
....+..+ +++.+.+.... ..+++-++|+|+++.... .+.+. +.....++.+|++|.+..
T Consensus 86 ~~~~i~~i-r~l~~~~~~~~---------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEHA---------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSCC---------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCCCHHHH-HHHHHHHhhcc---------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 11112111 11222211100 125678999999987432 22221 112334567777766543
Q ss_pred -hhhc---CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 297 -ICGQ---IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 297 -v~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
+... ....+.+.+++.++..+.+.+... --++....+++.++|.|..+..+
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-------~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-------MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-------CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3222 456899999999999999988751 12445678999999999765443
No 198
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.78 E-value=0.00017 Score=81.34 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=83.8
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccC---CC-c-eEEEEEeCCCCCHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESR---QF-D-FIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~F-~-~~~wv~vs~~~~~~~i~~~i 232 (913)
.+..++||+.+++.++..+......-+.++|++|+|||++|+.+++...-.. .. + ..+.+..+
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------ 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------ 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------
Confidence 3446899999999999999776667788999999999999999998763100 00 1 11122222
Q ss_pred HHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccccccccCC-CCCCCceEEEEeechhh----hhc-----CC
Q 045843 233 LKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEINLRDIGIH-DEHKNGKVVFACIFRNI----CGQ-----ID 302 (913)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~-~~~~~s~iivTTR~~~v----~~~-----~~ 302 (913)
....+.........+...-..++.+|++| ... +......+ -.....++|.||..... ... ..
T Consensus 246 -----~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~-~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf 317 (468)
T 3pxg_A 246 -----TKYRGEFEDRLKKVMDEIRQAGNIILFID--AAI-DASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRF 317 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC--C---------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred -----ccccchHHHHHHHHHHHHHhcCCeEEEEe--Cch-hHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhC
Confidence 00001111112222223334577899999 122 22222223 12223556666655431 111 33
Q ss_pred ceEEcccCChHHHHHHHHHHhCC
Q 045843 303 EEVNVQRLSGKDAQKLFWETVGV 325 (913)
Q Consensus 303 ~~~~l~~L~~~~~~~Lf~~~~~~ 325 (913)
.++.+++.+.++..+++...+..
T Consensus 318 ~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 318 QPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp EEEECCCCCHHHHHHHHHHTTTT
T ss_pred ccceeCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999876543
No 199
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.78 E-value=0.00056 Score=73.51 Aligned_cols=190 Identities=17% Similarity=0.185 Sum_probs=104.3
Q ss_pred CccccccchHHHHHHHHHHHhc-----CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHH
Q 045843 157 KKMEEVPSLNKHLKMLQECLRN-----VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
..+.+++|.+..++.+...+.. .....+.++|++|+||||||+.+++... ..|. .....-.....++. .
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~--~~~~---~~sg~~~~~~~~l~-~ 95 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ--TNIH---VTSGPVLVKQGDMA-A 95 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT--CCEE---EEETTTCCSHHHHH-H
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEE---EEechHhcCHHHHH-H
Confidence 3455678988877777666532 3446899999999999999999998874 2221 11111111111111 0
Q ss_pred HHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--cccccCC--CC--------C----------CCceEE
Q 045843 232 LLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--LRDIGIH--DE--------H----------KNGKVV 289 (913)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~~~~~~--~~--------~----------~~s~ii 289 (913)
+...+ .++-++++|++..... .+.+... .. . ....++
T Consensus 96 --------------------~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 96 --------------------ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp --------------------HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred --------------------HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 11111 2345777788764321 1111000 00 0 011222
Q ss_pred -EEeechhhhhc----CCceEEcccCChHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHHHHHh------
Q 045843 290 -FACIFRNICGQ----IDEEVNVQRLSGKDAQKLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLIGSSL------ 358 (913)
Q Consensus 290 -vTTR~~~v~~~----~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~~~~l------ 358 (913)
.|++...+... ....+.+++.+.++-.+++.+.+... ....-.+.+..|+++++|.|-.+..+-..+
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~--~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM--DVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT--TCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc--CCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 34444433222 33468999999999999998876422 122335678999999999996554433222
Q ss_pred hcC--CChHHHHHHHHhhc
Q 045843 359 ANV--SNPAIWRDMLSQLR 375 (913)
Q Consensus 359 ~~~--~~~~~w~~~~~~l~ 375 (913)
.+. -+.+.-+.+++.+.
T Consensus 233 ~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 233 VKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HTCSSBCHHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHhC
Confidence 111 34455555555543
No 200
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.77 E-value=3e-05 Score=75.29 Aligned_cols=115 Identities=20% Similarity=0.237 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHhc---CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc
Q 045843 165 LNKHLKMLQECLRN---VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE 241 (913)
Q Consensus 165 r~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 241 (913)
....++.+.+++.. ..-..+.|+|++|+||||||+.+++.......+. ++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 44555555555533 2346899999999999999999998774222222 2233 344455444443321111
Q ss_pred CCChHHHHHHHHHHHccCCeEEEEeCCCC--ccccccccC---C--CCCCCceEEEEeech
Q 045843 242 DHNIDQRADMISEELKDKSYVLFLDEVST--EINLRDIGI---H--DEHKNGKVVFACIFR 295 (913)
Q Consensus 242 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~~~---~--~~~~~s~iivTTR~~ 295 (913)
..... .+ .+.-+|||||++. .+.|..-.+ . ....|..||+||...
T Consensus 92 ----~~~~~----~~-~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ----TKFLK----TV-LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ----SHHHH----HH-HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ----HHHHH----Hh-cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11221 22 2567999999984 334432111 0 123567888888643
No 201
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.75 E-value=3.4e-06 Score=92.37 Aligned_cols=124 Identities=20% Similarity=0.224 Sum_probs=75.4
Q ss_pred hhceeeeccccccCC--CCC-CCCCceeEEeeccCccccCchHHH-----hcCCcccEEeccCCcccc-----cCccccC
Q 045843 507 VANRISLIRMCLSTL--PKR-PKCCRILTLLLQESSLAELPASFF-----GYMCSLQLLDLHDTKIKL-----LPSSISS 573 (913)
Q Consensus 507 ~~~~Lsl~~~~~~~l--~~~-~~~~~Lr~L~l~~~~l~~l~~~~f-----~~l~~Lr~LdLs~~~i~~-----lp~~i~~ 573 (913)
.++.|++.+|.+... ... ..+++|+.|++++|.++......+ ...+.|++|+|++|.++. ++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 566677776655321 111 234567888888876654333322 235678888888887753 4555567
Q ss_pred ccCcceeecCCccCccc-----cChhhhccccCCEEecCCCcCCcCC-----Ccc-ccccccccccccceeecccc
Q 045843 574 LTNLKALFLNNCCQLMR-----LPAEVGDLHNLEILDLSHTGICCLP-----SEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 574 L~~L~~L~L~~c~~l~~-----lP~~i~~L~~L~~L~L~~~~~~~lp-----~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+++|++|+|++| .+.. ++..+..+++|++|+|++|.+...+ ..+ ..+ +|++|++..+
T Consensus 182 ~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~-------~L~~L~Ls~N 249 (372)
T 3un9_A 182 NTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP-------SLELLHLYFN 249 (372)
T ss_dssp CSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCS-------SCCEEECTTS
T ss_pred CCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCC-------CCCEEeccCC
Confidence 777888888874 3442 3455667778888888887763221 111 334 7777777766
No 202
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.0005 Score=75.54 Aligned_cols=170 Identities=15% Similarity=0.258 Sum_probs=98.3
Q ss_pred cccCccccccchHHHHHHHHHHHh-------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeC
Q 045843 154 KHAKKMEEVPSLNKHLKMLQECLR-------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVN 220 (913)
Q Consensus 154 ~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (913)
.|...+.++.|.++.+++|.+.+. -...+-|-++|++|+|||+||+++++... ..| +.+..+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--~~~---~~v~~s 249 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--ANF---IFSPAS 249 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEE---EEEEGG
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEehh
Confidence 344455678899988888877662 12356899999999999999999999876 222 233333
Q ss_pred CCCCHHHHHHHHHHHccCCccCCChHHHHHHH-HHHHccCCeEEEEeCCCCcc--------ccc--------ccc----C
Q 045843 221 SEGNIRDIQEVLLKRLDLRAEDHNIDQRADMI-SEELKDKSYVLFLDEVSTEI--------NLR--------DIG----I 279 (913)
Q Consensus 221 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~--------~~~--------~~~----~ 279 (913)
.-.+ ...+ ........+ ...-...+.+|++|+++... ... .+. -
T Consensus 250 ~l~s--------------k~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 250 GIVD--------------KYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp GTCC--------------SSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred hhcc--------------ccch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 2111 1111 111122222 22224578999999998531 000 010 0
Q ss_pred CCCCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCc
Q 045843 280 HDEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 280 ~~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~Gl 347 (913)
.....+..||.||........ .+..+.++.-+.++-.++|+.+.... .....++ ..|++.+.|.
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~ 386 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGF 386 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSC
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCC
Confidence 123344567777765543322 23567888778888888887766433 1122233 4566777765
No 203
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.74 E-value=5.3e-05 Score=75.07 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcC----CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc
Q 045843 166 NKHLKMLQECLRNV----GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE 241 (913)
Q Consensus 166 ~~~~~~l~~~L~~~----~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~ 241 (913)
...++.+.+++... ....+.|+|++|+|||+||+.+++... .....++++.++ ++...+......
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 34455566666433 126899999999999999999998875 333445666543 444444433221
Q ss_pred CCChHHHHHHHHHHHccCCeEEEEeCCCC--ccccccc--cC--C--CCCCCceEEEEeec
Q 045843 242 DHNIDQRADMISEELKDKSYVLFLDEVST--EINLRDI--GI--H--DEHKNGKVVFACIF 294 (913)
Q Consensus 242 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~--~~--~--~~~~~s~iivTTR~ 294 (913)
......... +.. .-+|||||++. ...|..- .. . ....+..+|+||..
T Consensus 104 -~~~~~~~~~----~~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 -QTMNEKLDY----IKK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp -CCCHHHHHH----HHH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred -chHHHHHHH----hcC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 122222222 222 24999999966 3344322 11 1 11345678888864
No 204
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00044 Score=74.89 Aligned_cols=170 Identities=13% Similarity=0.205 Sum_probs=97.5
Q ss_pred cccCccccccchHHHHHHHHHHHh----c---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeC
Q 045843 154 KHAKKMEEVPSLNKHLKMLQECLR----N---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVN 220 (913)
Q Consensus 154 ~~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (913)
.|...+.++.|.++.+++|.+.+. . ...+-|-++|++|+|||.||+++++... ..| +.+..+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--~~f---i~v~~s 250 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--ATF---LRIVGS 250 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--CEE---EEEESG
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--CCE---EEEEHH
Confidence 445566678899998888877652 1 2356899999999999999999999876 322 222222
Q ss_pred CCCCHHHHHHHHHHHccCCccCCChHHHHHHHHH-HHccCCeEEEEeCCCCccc--------c----c----ccc----C
Q 045843 221 SEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISE-ELKDKSYVLFLDEVSTEIN--------L----R----DIG----I 279 (913)
Q Consensus 221 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~--------~----~----~~~----~ 279 (913)
.- ....- .+.+.....+.. .-+..+.+|++|+++.... . . .+. .
T Consensus 251 ~l--------------~sk~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 251 EL--------------IQKYL-GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp GG--------------CCSSS-SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred Hh--------------hhccC-chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 21 11111 111222222222 2235789999999875210 0 0 000 0
Q ss_pred CCCCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCc
Q 045843 280 HDEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 280 ~~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~Gl 347 (913)
.....+-.||.||...+.... .+..+.++.-+.++-.++|+.++... .....++ ..|++.+.|.
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 023334456667765544332 23467787778888888888776543 1222344 4556666665
No 205
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00029 Score=77.34 Aligned_cols=170 Identities=14% Similarity=0.179 Sum_probs=96.3
Q ss_pred cccCccccccchHHHHHHHHHHHh----c---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeC
Q 045843 154 KHAKKMEEVPSLNKHLKMLQECLR----N---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVN 220 (913)
Q Consensus 154 ~~~~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (913)
.|...+.++.|-++.+++|.+.+. . ...+-|-++|++|+|||.||+++++... ..| +.+..+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--~~f---~~v~~s 249 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--ATF---LKLAAP 249 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEE---EEEEGG
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--CCE---EEEehh
Confidence 344556678899999998887651 1 2356899999999999999999999876 222 223322
Q ss_pred CCCCHHHHHHHHHHHccCCccCCChHHHHHHHHH-HHccCCeEEEEeCCCCc-------cc-----cc----ccc--C--
Q 045843 221 SEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISE-ELKDKSYVLFLDEVSTE-------IN-----LR----DIG--I-- 279 (913)
Q Consensus 221 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~-------~~-----~~----~~~--~-- 279 (913)
.- ....-+ ..+.....+.. .-...+.+|++|+++.. .. .. .+. +
T Consensus 250 ~l--------------~~~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 250 QL--------------VQMYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp GG--------------CSSCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred hh--------------hhcccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 21 111111 11122222222 22357899999998642 00 00 010 0
Q ss_pred CCCCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCc
Q 045843 280 HDEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 280 ~~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~Gl 347 (913)
.....+-.||.||........ .+..+.++.-+.++-.++|+.++... .....++ ..|++.+.|.
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 022334456667765443222 34578888888888888887665332 1122233 4566777764
No 206
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=6.3e-05 Score=77.26 Aligned_cols=65 Identities=25% Similarity=0.263 Sum_probs=34.7
Q ss_pred hcCCcccEEeccCCcccccC---ccccCccCcceeecCCccCccccChhhhccc--cCCEEecCCCcC-CcCC
Q 045843 549 GYMCSLQLLDLHDTKIKLLP---SSISSLTNLKALFLNNCCQLMRLPAEVGDLH--NLEILDLSHTGI-CCLP 615 (913)
Q Consensus 549 ~~l~~Lr~LdLs~~~i~~lp---~~i~~L~~L~~L~L~~c~~l~~lP~~i~~L~--~L~~L~L~~~~~-~~lp 615 (913)
.++++|+.|+|++|.|+.++ ..+..+++|++|+|++ +.+..+ ..+..+. +|++|+|++|.+ ..+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 34556666666666555332 3445566666666665 445544 2344444 666666666665 3344
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.64 E-value=0.00092 Score=68.86 Aligned_cols=174 Identities=17% Similarity=0.187 Sum_probs=94.0
Q ss_pred cCccccccchHHHHHHHHHHH---hc---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC
Q 045843 156 AKKMEEVPSLNKHLKMLQECL---RN---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG 223 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L---~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (913)
...+.+++|.+..++++.+.+ .. ...+-+.|+|++|+||||+|+.+++... ..| +.+..+.-.
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~---~~i~~~~~~ 82 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPF---FTISGSDFV 82 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CCE---EEECSCSST
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CCE---EEEeHHHHH
Confidence 345567789888877766543 21 1234688999999999999999998764 222 233222110
Q ss_pred CHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc----------------ccccc----CCCCC
Q 045843 224 NIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN----------------LRDIG----IHDEH 283 (913)
Q Consensus 224 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~~~----~~~~~ 283 (913)
+ ...+.........+.......+.++++|++..... ...+. .....
T Consensus 83 ~--------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 83 E--------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp T--------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred H--------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0 00111222222333333345678999999843110 00010 00123
Q ss_pred CCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCC-CCCCChHHHHHHHHHHhCC-cHHHHH
Q 045843 284 KNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQL-KDCRDIKPVARLIINECGG-MPHMIK 352 (913)
Q Consensus 284 ~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~I~~~c~G-lPlai~ 352 (913)
.+..||.||........ ....+.++..+.++-.+++...+.... ..... ...+++.+.| .+--+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 34556666665432111 245677888888888888877664321 11112 2456677777 554443
No 208
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.62 E-value=0.00097 Score=73.60 Aligned_cols=81 Identities=10% Similarity=0.171 Sum_probs=47.5
Q ss_pred ccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccCcc
Q 045843 774 SLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSL 853 (913)
Q Consensus 774 ~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~ 853 (913)
.+++|+.+.+.. .++.+ +...+.++++|+.+.|.+. ++.|.. ..+.++.+|+.+.|-. +++.+....+.
T Consensus 286 ~c~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~~--v~~I~~----~aF~~C~~L~~i~ip~--sv~~I~~~aF~ 354 (394)
T 4gt6_A 286 NCPALQDIEFSS--RITEL-PESVFAGCISLKSIDIPEG--ITQILD----DAFAGCEQLERIAIPS--SVTKIPESAFS 354 (394)
T ss_dssp TCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCTT--CCEECT----TTTTTCTTCCEEEECT--TCCBCCGGGGT
T ss_pred cccccccccCCC--ccccc-CceeecCCCCcCEEEeCCc--ccEehH----hHhhCCCCCCEEEECc--ccCEEhHhHhh
Confidence 456677777642 34444 3355667777777777432 344422 2445566777777643 35566554566
Q ss_pred CCCCccEEeeec
Q 045843 854 AWPLLETITIKA 865 (913)
Q Consensus 854 ~~p~L~~L~i~~ 865 (913)
.+++|+.+++.+
T Consensus 355 ~C~~L~~i~~~~ 366 (394)
T 4gt6_A 355 NCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEEESS
T ss_pred CCCCCCEEEECC
Confidence 677777777765
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00029 Score=77.31 Aligned_cols=171 Identities=17% Similarity=0.264 Sum_probs=92.4
Q ss_pred cccCccccccchHHHHHHHHHHHh-------------cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeC
Q 045843 154 KHAKKMEEVPSLNKHLKMLQECLR-------------NVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVN 220 (913)
Q Consensus 154 ~~~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (913)
.|...+.++.|-++.+++|.+.+. -...+-|-++|++|+|||++|+++++... .+| +.|..+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--~~~---~~v~~~ 240 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--AAF---IRVNGS 240 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--CEE---EEEEGG
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCe---EEEecc
Confidence 344556678899999988887662 12346799999999999999999999876 222 233333
Q ss_pred CCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCc--------ccc--------ccccC----C
Q 045843 221 SEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTE--------INL--------RDIGI----H 280 (913)
Q Consensus 221 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~~--------~~~~~----~ 280 (913)
.-.+ ..-+.....+.......-...+.+|++|+++.. ... ..+.. .
T Consensus 241 ~l~~--------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 241 EFVH--------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp GTCC--------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred hhhc--------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 2111 001111111111122222457899999998641 000 00100 0
Q ss_pred CCCCCceEEEEeechhhhhc-------CCceEEcccCChHHH-HHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCc
Q 045843 281 DEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDA-QKLFWETVGVQ-LKDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 281 ~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~-~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~Gl 347 (913)
....+-.||.||........ .+..+.+..++..++ .++|+...... .....++ ..|++++.|.
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 23344556677765443222 234677776765554 45555554322 1122233 4566677665
No 210
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.61 E-value=0.00033 Score=84.38 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=85.8
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhccc---CCCceEEEEEeCCCCCHHHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGES---RQFDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
.+..++||+.+++.++..|......-+.++|++|+|||++|+.+++...-. ......-++.++-
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 344689999999999999977666778999999999999999999875210 0000111111111
Q ss_pred HccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccccccccCC-CCCCCceEEEEeechhh----hhc-----CCce
Q 045843 235 RLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEINLRDIGIH-DEHKNGKVVFACIFRNI----CGQ-----IDEE 304 (913)
Q Consensus 235 ~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~-~~~~~s~iivTTR~~~v----~~~-----~~~~ 304 (913)
+....+.....+...+...-..++.+|++| ...+......+ -.....++|.||..... ... ....
T Consensus 245 --g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~ 319 (758)
T 3pxi_A 245 --GTKYRGEFEDRLKKVMDEIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQP 319 (758)
T ss_dssp ----------CTTHHHHHHHHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEE
T ss_pred --cccccchHHHHHHHHHHHHHhcCCEEEEEc---CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcE
Confidence 111111111222223333344678899999 22222222223 22334566666665441 111 3357
Q ss_pred EEcccCChHHHHHHHHHHhCC
Q 045843 305 VNVQRLSGKDAQKLFWETVGV 325 (913)
Q Consensus 305 ~~l~~L~~~~~~~Lf~~~~~~ 325 (913)
+.++..+.++..+++......
T Consensus 320 i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 320 IQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EECCCCCHHHHHHHHHHTTTT
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876543
No 211
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.55 E-value=2.8e-05 Score=85.01 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=81.6
Q ss_pred hhhhceeeeccccccCCCC-----C--CCCCceeEEeeccCccccCch----HHHhcCCcccEEeccCCcccc-----cC
Q 045843 505 WEVANRISLIRMCLSTLPK-----R--PKCCRILTLLLQESSLAELPA----SFFGYMCSLQLLDLHDTKIKL-----LP 568 (913)
Q Consensus 505 ~~~~~~Lsl~~~~~~~l~~-----~--~~~~~Lr~L~l~~~~l~~l~~----~~f~~l~~Lr~LdLs~~~i~~-----lp 568 (913)
..+++.|++.+|.+..... . ..+++|++|++++|.++.... ..+..+++|++|+|++|.|.. ++
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 3578899999987753211 1 246789999999998765322 223778999999999999873 46
Q ss_pred ccccCccCcceeecCCccCcc-----ccChhhhccccCCEEecCCCcCC
Q 045843 569 SSISSLTNLKALFLNNCCQLM-----RLPAEVGDLHNLEILDLSHTGIC 612 (913)
Q Consensus 569 ~~i~~L~~L~~L~L~~c~~l~-----~lP~~i~~L~~L~~L~L~~~~~~ 612 (913)
..+....+|++|+|++| .++ .++..+...++|++|+|++|.+.
T Consensus 205 ~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 67788889999999995 555 35556777899999999999874
No 212
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.51 E-value=0.00048 Score=83.98 Aligned_cols=153 Identities=17% Similarity=0.213 Sum_probs=84.4
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcc---cCCC-c-eEEEEEeCCCCCHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGE---SRQF-D-FIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~---~~~F-~-~~~wv~vs~~~~~~~i~~~i 232 (913)
.+..++||+.++..+++.+.....+.+.++|++|+||||+|+.+++...- .... . ..+++.++.-..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 44568999999999999997766667889999999999999999987631 1111 1 233333222100
Q ss_pred HHHccCCccCCChHHHHHHHHHHHc--cCCeEEEEeCCCCccc-------ccc--ccCC-CCCCCceEEEEeechhh---
Q 045843 233 LKRLDLRAEDHNIDQRADMISEELK--DKSYVLFLDEVSTEIN-------LRD--IGIH-DEHKNGKVVFACIFRNI--- 297 (913)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~-------~~~--~~~~-~~~~~s~iivTTR~~~v--- 297 (913)
+... ..........+.+.+. +++.+|++||+..... ++. ...+ -...+..+|.||.....
T Consensus 240 ----g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~ 314 (854)
T 1qvr_A 240 ----GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREI 314 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHH
T ss_pred ----cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhh
Confidence 0000 1122222233333332 3678999999986421 111 1111 11223456655554322
Q ss_pred hhc-----CCceEEcccCChHHHHHHHHHHh
Q 045843 298 CGQ-----IDEEVNVQRLSGKDAQKLFWETV 323 (913)
Q Consensus 298 ~~~-----~~~~~~l~~L~~~~~~~Lf~~~~ 323 (913)
... ....+.+++.+.++..+++....
T Consensus 315 ~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 315 EKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp TTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred ccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 111 23468999999999999987543
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.50 E-value=0.00093 Score=75.24 Aligned_cols=174 Identities=19% Similarity=0.279 Sum_probs=99.8
Q ss_pred ccccccchHHHHHHHHHHHhc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC
Q 045843 158 KMEEVPSLNKHLKMLQECLRN-------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN 224 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (913)
.+.+++|.+..+++|.+++.. ....-+.|+|++|+|||++|+.+++... ..| +.+.++
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~~f---v~vn~~---- 272 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFF---FLINGP---- 272 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--SEE---EEEEHH----
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--CCE---EEEEch----
Confidence 344678999999998887732 3445789999999999999999988763 222 223221
Q ss_pred HHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc--------c-----ccccc---C-CCCCCCce
Q 045843 225 IRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI--------N-----LRDIG---I-HDEHKNGK 287 (913)
Q Consensus 225 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~-----~~~~~---~-~~~~~~s~ 287 (913)
+ +...+ .+.........+.....+++.+|+|||++... . ...+. - .....+..
T Consensus 273 --~----l~~~~----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 --E----IMSKL----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp --H----HHTSC----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred --H----hhhhh----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 1 11111 11111222333344445678899999984311 0 00110 0 02233445
Q ss_pred EEEEeechhh-----hhc--CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCc-HHHHHHH
Q 045843 288 VVFACIFRNI-----CGQ--IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGM-PHMIKLI 354 (913)
Q Consensus 288 iivTTR~~~v-----~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~Gl-Plai~~~ 354 (913)
||.||....- ... ....+.+...+.++-.+++...+... ......+ .++++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 5666664422 111 34578999999999999999887543 1122233 4566667664 5444443
No 214
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.49 E-value=0.0019 Score=71.31 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=67.3
Q ss_pred ccccccEEeeccCccccccCchHHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccCcc
Q 045843 774 SLIMLETLILKRCHGMKTLFSEEIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSL 853 (913)
Q Consensus 774 ~l~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~ 853 (913)
.+.+|+.+.+.+ .+..+ ....+.++++|+.+.+.. .++.++. ..+.++.+|+.+.|.. +++.+....+.
T Consensus 263 ~c~~L~~i~lp~--~~~~I-~~~aF~~c~~L~~i~l~~--~i~~I~~----~aF~~c~~L~~i~lp~--~v~~I~~~aF~ 331 (394)
T 4gt6_A 263 SCAYLASVKMPD--SVVSI-GTGAFMNCPALQDIEFSS--RITELPE----SVFAGCISLKSIDIPE--GITQILDDAFA 331 (394)
T ss_dssp TCSSCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCT--TCCEECT----TTTTTCTTCCEEECCT--TCCEECTTTTT
T ss_pred ecccccEEeccc--cccee-cCcccccccccccccCCC--cccccCc----eeecCCCCcCEEEeCC--cccEehHhHhh
Confidence 567778877754 22333 235667788888888852 3444432 2455667888888754 46666655667
Q ss_pred CCCCccEEeeecCcccccccCC-CcCCCCcceeeecc
Q 045843 854 AWPLLETITIKACDELRNFPST-IENASKLRGIQCNQ 889 (913)
Q Consensus 854 ~~p~L~~L~i~~C~~L~~lP~~-~~~l~~L~~l~~~~ 889 (913)
.+.+|+.+.|-. +++.++.. +.++++|+.+....
T Consensus 332 ~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 332 GCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred CCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 778888888854 57777654 55888888887764
No 215
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.47 E-value=3.8e-05 Score=78.84 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=63.3
Q ss_pred CCCCceeEEeeccCccccCch--HHHhcCCcccEEeccCCcccccCccccCcc--CcceeecCCccCccccC-------h
Q 045843 525 PKCCRILTLLLQESSLAELPA--SFFGYMCSLQLLDLHDTKIKLLPSSISSLT--NLKALFLNNCCQLMRLP-------A 593 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~~l~~l~~--~~f~~l~~Lr~LdLs~~~i~~lp~~i~~L~--~L~~L~L~~c~~l~~lP-------~ 593 (913)
..+++|++|+|++|.++.++. ..+..+++|++|+|++|.|+.+. .+..+. +|++|+|++|.-...+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 357899999999998887653 55689999999999999999773 355555 99999999965444455 2
Q ss_pred hhhccccCCEEec
Q 045843 594 EVGDLHNLEILDL 606 (913)
Q Consensus 594 ~i~~L~~L~~L~L 606 (913)
.+..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3678999998873
No 216
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.46 E-value=0.00011 Score=79.49 Aligned_cols=127 Identities=14% Similarity=0.083 Sum_probs=82.8
Q ss_pred hhhhhceeeeccccccCCCCCCCCCceeEEeeccCccccCchHHHh--cCCcccEEeccCC--c------ccccCccc--
Q 045843 504 EWEVANRISLIRMCLSTLPKRPKCCRILTLLLQESSLAELPASFFG--YMCSLQLLDLHDT--K------IKLLPSSI-- 571 (913)
Q Consensus 504 ~~~~~~~Lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~l~~~~f~--~l~~Lr~LdLs~~--~------i~~lp~~i-- 571 (913)
..+.++.|++.++.-..++. ...++|+.|.+..|.+..-.-..+. .+++|+.|+|+.+ . +..+...+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred cCCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 34678999998774234444 3478999999988865432222233 6899999998631 1 22232223
Q ss_pred cCccCcceeecCCccCccccChhhh---ccccCCEEecCCCcCCc-----CCCcc-ccccccccccccceeecccc
Q 045843 572 SSLTNLKALFLNNCCQLMRLPAEVG---DLHNLEILDLSHTGICC-----LPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 572 ~~L~~L~~L~L~~c~~l~~lP~~i~---~L~~L~~L~L~~~~~~~-----lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
..+++|++|+|++|......+..+. .+++|++|+|+.|.+.. ++..+ .++ +|+.|++..+
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~-------~L~~L~L~~n 317 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-------HLKFINMKYN 317 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT-------TCSEEECCSB
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC-------cceEEECCCC
Confidence 3578999999998643333333333 58899999999988733 34443 556 8888888766
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.36 E-value=0.0016 Score=72.60 Aligned_cols=169 Identities=17% Similarity=0.240 Sum_probs=96.5
Q ss_pred CccccccchHHHHHHHHHHH---hcC---------CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC
Q 045843 157 KKMEEVPSLNKHLKMLQECL---RNV---------GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN 224 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L---~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (913)
..+.+++|.++.++++.+.+ ... -.+-|.++|++|+|||+||+.+++... ..| +.+..+.-.+
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--~~f---~~is~~~~~~ 87 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VPF---FHISGSDFVE 87 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--CCE---EEEEGGGTTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCe---eeCCHHHHHH
Confidence 34556789988877776654 221 234588999999999999999998765 222 2333332211
Q ss_pred HHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc----------------cccccCC----CCCC
Q 045843 225 IRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN----------------LRDIGIH----DEHK 284 (913)
Q Consensus 225 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------------~~~~~~~----~~~~ 284 (913)
. ..+.........+.......+.+|+||++..... ...+... ....
T Consensus 88 ~--------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 88 L--------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp C--------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred H--------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 0001112222334444456789999999965211 1111100 1223
Q ss_pred CceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCC-CCCCChHHHHHHHHHHhCCcH
Q 045843 285 NGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQL-KDCRDIKPVARLIINECGGMP 348 (913)
Q Consensus 285 ~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~I~~~c~GlP 348 (913)
+..||.||........ ....+.++..+.++-.++++.++.... ....+ ...|++.+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 5566777766543221 334788888888888888877765431 11222 244777888866
No 218
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.36 E-value=0.00026 Score=65.82 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 161 EVPSLNKHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 367999999988887732 233457899999999999999998764
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.35 E-value=0.0013 Score=79.16 Aligned_cols=153 Identities=18% Similarity=0.217 Sum_probs=90.7
Q ss_pred ccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccC----CCceEEEE-EeCCCCCHHHHHHHH
Q 045843 158 KMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESR----QFDFIFWV-TVNSEGNIRDIQEVL 232 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv-~vs~~~~~~~i~~~i 232 (913)
.+..++||+.+++.+++.|......-+.++|++|+|||++|+.+++...... ...+.++. ..+.-
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 3446899999999999999877777889999999999999999998653111 12333331 11110
Q ss_pred HHHccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCcc--------cc--ccccCC-CCCCCceEEEEeechhhhhc
Q 045843 233 LKRLDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTEI--------NL--RDIGIH-DEHKNGKVVFACIFRNICGQ 300 (913)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------~~--~~~~~~-~~~~~s~iivTTR~~~v~~~ 300 (913)
+.........+.....+.+.+ ..++.+|++||+.... .. ..+..+ ....+..+|.+|........
T Consensus 254 ---~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~ 330 (758)
T 1r6b_X 254 ---LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNI 330 (758)
T ss_dssp ----CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCC
T ss_pred ---hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhh
Confidence 001111122333333333333 3467899999998641 11 111122 23344566666665432111
Q ss_pred ---------CCceEEcccCChHHHHHHHHHHh
Q 045843 301 ---------IDEEVNVQRLSGKDAQKLFWETV 323 (913)
Q Consensus 301 ---------~~~~~~l~~L~~~~~~~Lf~~~~ 323 (913)
....+.++..+.++..+++....
T Consensus 331 ~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 22368899999999988887654
No 220
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.29 E-value=0.0001 Score=71.86 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=39.2
Q ss_pred CCceeEEeeccCccccCc----hHHHhcCCcccEEeccCCcccc-----cCccccCccCcceeec--CCccCccc-----
Q 045843 527 CCRILTLLLQESSLAELP----ASFFGYMCSLQLLDLHDTKIKL-----LPSSISSLTNLKALFL--NNCCQLMR----- 590 (913)
Q Consensus 527 ~~~Lr~L~l~~~~l~~l~----~~~f~~l~~Lr~LdLs~~~i~~-----lp~~i~~L~~L~~L~L--~~c~~l~~----- 590 (913)
.++|++|++++|.+..-. ...+...+.|++|+|++|.|.. +...+....+|++|+| ++ +.+..
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~ 142 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEME 142 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHH
Confidence 445555555555443211 1112344555555555555542 3344445555555555 43 23332
Q ss_pred cChhhhccccCCEEecCCCcC
Q 045843 591 LPAEVGDLHNLEILDLSHTGI 611 (913)
Q Consensus 591 lP~~i~~L~~L~~L~L~~~~~ 611 (913)
+...+...++|++|++++|.+
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCcCEEeccCCCC
Confidence 233344445555555555544
No 221
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.24 E-value=0.00014 Score=70.77 Aligned_cols=106 Identities=10% Similarity=0.031 Sum_probs=77.3
Q ss_pred CCCCceeEEeeccC-ccccC----chHHHhcCCcccEEeccCCcccc-----cCccccCccCcceeecCCccCccc----
Q 045843 525 PKCCRILTLLLQES-SLAEL----PASFFGYMCSLQLLDLHDTKIKL-----LPSSISSLTNLKALFLNNCCQLMR---- 590 (913)
Q Consensus 525 ~~~~~Lr~L~l~~~-~l~~l----~~~~f~~l~~Lr~LdLs~~~i~~-----lp~~i~~L~~L~~L~L~~c~~l~~---- 590 (913)
..+++|++|++++| .+..- ....+...++|++|+|++|.|.. +...+....+|++|+|++| .+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHH
Confidence 34678999999998 77542 12234677899999999999863 4566667789999999994 5554
Q ss_pred -cChhhhccccCCEEec--CCCcCCc-----CCCcc-ccccccccccccceeecccc
Q 045843 591 -LPAEVGDLHNLEILDL--SHTGICC-----LPSEI-DLTTLCFYFPNVGLLQNFIN 638 (913)
Q Consensus 591 -lP~~i~~L~~L~~L~L--~~~~~~~-----lp~~i-~L~~L~~~~~~L~~L~l~~~ 638 (913)
+...+...++|++|+| ++|.+.. +...+ ..+ +|++|++..+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~-------~L~~L~L~~n 161 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-------TLLKFGYHFT 161 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-------SCCEEECCCS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCC-------CcCEEeccCC
Confidence 5667888899999999 7788732 11111 334 7888888766
No 222
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.24 E-value=0.0021 Score=67.65 Aligned_cols=142 Identities=11% Similarity=0.052 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCceEEEEEeCC-CCCHHHHHHHHHHHccCCc
Q 045843 164 SLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGES--RQFDFIFWVTVNS-EGNIRDIQEVLLKRLDLRA 240 (913)
Q Consensus 164 gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~ 240 (913)
|.++.++.+.+.+..++.+...++|+.|+||||+|+.+.+..... .+.+. .++..+. ...+..+. ++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~ir-~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDIR-TIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHHH-HHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHHH-HHHHHHhhcc
Confidence 445566777788876667789999999999999999998753211 13333 4444332 23333332 2333332111
Q ss_pred cCCChHHHHHHHHHHHccCCeEEEEeCCCCcc--ccccccC--CCCCCCceEEEEeech-hhhhc--CCceEEcccCChH
Q 045843 241 EDHNIDQRADMISEELKDKSYVLFLDEVSTEI--NLRDIGI--HDEHKNGKVVFACIFR-NICGQ--IDEEVNVQRLSGK 313 (913)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~--~~~~~~s~iivTTR~~-~v~~~--~~~~~~l~~L~~~ 313 (913)
..+++-++|+|++.... ..+.+.- ......+.+|++|.+. .+... .. .+++.+++++
T Consensus 79 ---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 79 ---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp ---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred ---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 12467899999998743 2222211 1334567777776543 33222 45 9999999999
Q ss_pred HHHHHHHHHh
Q 045843 314 DAQKLFWETV 323 (913)
Q Consensus 314 ~~~~Lf~~~~ 323 (913)
+..+.+.+.+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 223
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.22 E-value=0.00022 Score=74.08 Aligned_cols=149 Identities=16% Similarity=0.160 Sum_probs=80.0
Q ss_pred ccccccchHHHHHHHHHHHh---c---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCH
Q 045843 158 KMEEVPSLNKHLKMLQECLR---N---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNI 225 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (913)
.+.+++|.+..++.+.+.+. . ...+-+.++|++|+|||++|+.+++... ..|-. +..+.-.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~~---v~~~~~~-- 81 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH--VPFFS---MGGSSFI-- 81 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT--CCCCC---CCSCTTT--
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEE---echHHHH--
Confidence 44567788877776665542 1 1233477999999999999999998765 23311 1111100
Q ss_pred HHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCcc-----------------ccccccCC-C----CC
Q 045843 226 RDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEI-----------------NLRDIGIH-D----EH 283 (913)
Q Consensus 226 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------------~~~~~~~~-~----~~ 283 (913)
...... ....... .+......++.+|++||+.... ....+... . ..
T Consensus 82 --------~~~~~~-~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 82 --------EMFVGL-GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp --------TSCSSS-CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred --------Hhhcch-HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 000000 0111111 1222223467899999996531 11111111 1 11
Q ss_pred CCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCC
Q 045843 284 KNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGV 325 (913)
Q Consensus 284 ~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~ 325 (913)
....||.||........ ....+.++..+.++-.+++...+..
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 22456666665432111 2356788888888888888777643
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.16 E-value=0.0018 Score=68.69 Aligned_cols=46 Identities=33% Similarity=0.455 Sum_probs=37.6
Q ss_pred cccchHHHHHHHHHHHhc--------------CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 161 EVPSLNKHLKMLQECLRN--------------VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+.+...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 367999999988877743 2345788999999999999999998774
No 225
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.12 E-value=0.00026 Score=65.60 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=33.3
Q ss_pred cccchHHHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 161 EVPSLNKHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 467988888888887742 333457799999999999999987653
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.08 E-value=0.0013 Score=70.02 Aligned_cols=103 Identities=14% Similarity=0.262 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHHhcC---------CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHH
Q 045843 162 VPSLNKHLKMLQECLRNV---------GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVL 232 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i 232 (913)
++|.+..++.+...+... ....+.++|++|+|||++|+.+++... ..-...+.+.++...+... ...+
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~--~~~~~~~~~~~~~~~~~~~-~~~l 95 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHA-VSRL 95 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH--SCGGGEEEEEGGGCCSTTH-HHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc--CCCcceEEeeccccccccc-HHHh
Confidence 568888888888777432 134799999999999999999998764 2222244555544322111 1111
Q ss_pred HHHccCCccCCChHHHHHHHHHHHc-cCCeEEEEeCCCCc
Q 045843 233 LKRLDLRAEDHNIDQRADMISEELK-DKSYVLFLDEVSTE 271 (913)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~ 271 (913)
++.......... ...+.+.+. ...-+|+||++...
T Consensus 96 ---~g~~~~~~~~~~-~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 96 ---IGAPPGYVGYEE-GGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp ---HCCCTTSTTTTT-CCHHHHHHHHCSSEEEEEETGGGS
T ss_pred ---cCCCCccccccc-cchHHHHHHhCCCeEEEEeChhhc
Confidence 222111100000 012333333 34579999999764
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.03 E-value=0.0014 Score=67.92 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=34.2
Q ss_pred cccccchHHHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 159 MEEVPSLNKHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+..++|.+..+.++.+.+.. .....|.|+|.+|+|||++|+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 34568999888888776632 2335678999999999999999987653
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.03 E-value=0.00042 Score=64.56 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=29.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS 221 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 221 (913)
.-..++|+|+.|+|||||++.+++..... .+ ..+++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 45689999999999999999999877532 11 255665443
No 229
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.01 E-value=0.0028 Score=66.93 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 161 EVPSLNKHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 367888888888887743 334567799999999999999999864
No 230
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.01 E-value=0.0043 Score=73.45 Aligned_cols=168 Identities=20% Similarity=0.299 Sum_probs=93.8
Q ss_pred ccccccchHHHHHHHHHHH----hc---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC
Q 045843 158 KMEEVPSLNKHLKMLQECL----RN---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN 224 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L----~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (913)
.+.++.|.++.+++|.+++ .. ...+-|-++|++|+|||+||+.+++... .+| +.|..+.
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--~~~---~~v~~~~--- 273 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFF---FLINGPE--- 273 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--CEE---EEEEHHH---
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CeE---EEEEhHH---
Confidence 3446778887777776665 21 2346799999999999999999998765 222 2333211
Q ss_pred HHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--------cc-----cccCC----CCCCCce
Q 045843 225 IRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--------LR-----DIGIH----DEHKNGK 287 (913)
Q Consensus 225 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------~~-----~~~~~----~~~~~s~ 287 (913)
+. ....+.....+........+..+.+|++|+++..-. .+ .+... ....+-.
T Consensus 274 -------l~----sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 -------IM----SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -------HH----SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -------hh----cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11 011111122222223333356789999999875311 10 01000 1222334
Q ss_pred EEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCcH
Q 045843 288 VVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGMP 348 (913)
Q Consensus 288 iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~GlP 348 (913)
||.||...+.... ....++++.-+.++-.++|+...... .....++ ..|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 5555554332211 34578888888888888888766443 2222333 45677777763
No 231
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.97 E-value=0.02 Score=62.45 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=78.6
Q ss_pred cCcccCcceEEecccCCceEeecCCCcccccccCCceEeccc-ccccchhccccccccccccccEEeeccCccccccCch
Q 045843 717 ANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISH-LPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSE 795 (913)
Q Consensus 717 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~ 795 (913)
+....+|+.+.+.. .+..+....+. .+..|+.+.+.. +..+. ......+.+|+.+.+.. .++.+ +.
T Consensus 213 f~~~~~l~~i~~~~--~~~~i~~~~f~---~~~~L~~i~lp~~v~~I~-----~~aF~~~~~l~~i~l~~--~i~~i-~~ 279 (379)
T 4h09_A 213 FSYGKNLKKITITS--GVTTLGDGAFY---GMKALDEIAIPKNVTSIG-----SFLLQNCTALKTLNFYA--KVKTV-PY 279 (379)
T ss_dssp TTTCSSCSEEECCT--TCCEECTTTTT---TCSSCCEEEECTTCCEEC-----TTTTTTCTTCCEEEECC--CCSEE-CT
T ss_pred cccccccceeeecc--ceeEEcccccc---CCccceEEEcCCCccEeC-----ccccceeehhccccccc--cceec-cc
Confidence 34456677776653 23233333344 567788777732 22221 11223567788888854 35444 33
Q ss_pred HHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecccccccccccccCccCCCCccEEeeecCcccccccC
Q 045843 796 EIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLINLPKLSSICHNMSLAWPLLETITIKACDELRNFPS 874 (913)
Q Consensus 796 ~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~i~~~~~~~~p~L~~L~i~~C~~L~~lP~ 874 (913)
..+.++++|+.+.+.++. ++.|.. ..+.++.+|+.+.|.. +++.|....+..+++|+.+.|-. +++.+..
T Consensus 280 ~aF~~c~~L~~i~l~~~~-i~~I~~----~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSA-IETLEP----RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp TTTTTCTTCCEEEECCTT-CCEECT----TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred cccccccccccccccccc-cceehh----hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEch
Confidence 567788888888886432 444432 2455667888888753 36666554566677788777743 4666643
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.85 E-value=0.016 Score=59.28 Aligned_cols=169 Identities=16% Similarity=0.224 Sum_probs=86.2
Q ss_pred ccCccccccchHHHHHHHHHHH---hc---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC
Q 045843 155 HAKKMEEVPSLNKHLKMLQECL---RN---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE 222 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~l~~~L---~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (913)
|...+.+++|.+..+.++.+.. .. .-.+-+.|+|++|+||||||+.+++... .. .+.+...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~~---~i~~~~~-- 83 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VP---FITASGS-- 83 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--CC---EEEEEHH--
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CC---EEEeeHH--
Confidence 3444556778877666655433 11 1122489999999999999999998764 22 2222211
Q ss_pred CCHHHHHHHHHHHccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCcc------------cc----cccc--CC--C
Q 045843 223 GNIRDIQEVLLKRLDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTEI------------NL----RDIG--IH--D 281 (913)
Q Consensus 223 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~------------~~----~~~~--~~--~ 281 (913)
++ .... . .........+.+.. .....++++||+.... .+ ..+. +. .
T Consensus 84 ----~~----~~~~-~----~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 84 ----DF----VEMF-V----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp ----HH----HHSC-T----THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred ----HH----HHHH-h----hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 11 1100 0 00111122222222 2356899999984310 01 1110 00 1
Q ss_pred CCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCC-CCCCChHHHHHHHHHHhCCc
Q 045843 282 EHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQL-KDCRDIKPVARLIINECGGM 347 (913)
Q Consensus 282 ~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~I~~~c~Gl 347 (913)
.....-++.||....+... ....+.++..+.++-.++++..+.... ....+ ...|++.+.|.
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~ 220 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGF 220 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTC
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCC
Confidence 1222344455555544322 345788888888888888877653321 11122 23466666664
No 233
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.84 E-value=0.018 Score=59.53 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=81.1
Q ss_pred cCccccccchHHHHHHHHHHHh----------c---CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC
Q 045843 156 AKKMEEVPSLNKHLKMLQECLR----------N---VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE 222 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L~----------~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (913)
.....++.|.++.+++|.+.+. + .-.+-+.++|++|+||||||+.++..... ..+.+..+.-
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l 80 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPEL 80 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHH
Confidence 3445567788888887776541 1 11233999999999999999999987652 2344443221
Q ss_pred CCHHHHHHHHHHHccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCccc---------cccc--cCC------CCCC
Q 045843 223 GNIRDIQEVLLKRLDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTEIN---------LRDI--GIH------DEHK 284 (913)
Q Consensus 223 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~---------~~~~--~~~------~~~~ 284 (913)
.+. . ..........+.+.. ...+.++++|++..... ...+ ..+ ....
T Consensus 81 ~~~--------------~-~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 81 LNM--------------Y-VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp CSS--------------T-THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred Hhh--------------h-hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 110 0 000111122222222 34678999999975311 0000 000 1223
Q ss_pred CceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhC
Q 045843 285 NGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVG 324 (913)
Q Consensus 285 ~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~ 324 (913)
..-++.+|....+... ....+.++.-+.++-.++|+....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 3445566666554332 456788888888888888887764
No 234
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.73 E-value=0.012 Score=65.84 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=37.3
Q ss_pred ccccccchHHHHHHHHHHH---hcC--CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 158 KMEEVPSLNKHLKMLQECL---RNV--GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L---~~~--~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+++|.++.++.+..++ ... ..+-+.++|++|+|||++|+.+++...
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 3457889998887655444 333 235789999999999999999998775
No 235
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.71 E-value=0.084 Score=57.47 Aligned_cols=105 Identities=10% Similarity=0.128 Sum_probs=57.9
Q ss_pred cCcccCcceEEecccCCceEeecCCCcccccccCCceEeccc-ccccchhccccccccccccccEEeeccCccccccCch
Q 045843 717 ANKFGDVEACIVEDCNEMISIIDGNLTEGVTFQHLKKLHISH-LPKLMHIWKGSIQSGSLIMLETLILKRCHGMKTLFSE 795 (913)
Q Consensus 717 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~ 795 (913)
+..+.+|+.+.+... +..+-...+. .+.+|+.+.+.. +..+. ......+++|+.+.+.+ +.++.+ +.
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~~~aF~---~~~~l~~i~l~~~i~~i~-----~~aF~~c~~L~~i~l~~-~~i~~I-~~ 303 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIGSFLLQ---NCTALKTLNFYAKVKTVP-----YLLCSGCSNLTKVVMDN-SAIETL-EP 303 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEECTTTTT---TCTTCCEEEECCCCSEEC-----TTTTTTCTTCCEEEECC-TTCCEE-CT
T ss_pred ccCCccceEEEcCCC--ccEeCccccc---eeehhccccccccceecc-----ccccccccccccccccc-ccccee-hh
Confidence 455667777777542 3233333344 567777777732 22111 11123577888888866 445555 33
Q ss_pred HHHhhcCCCcEEEEccCchhHhhhcCCcccCCCCCCccceeecc
Q 045843 796 EIIFQLNQIQYLQVEDCKEMEEIIEAGSAVDSRAFPKLKSFQLI 839 (913)
Q Consensus 796 ~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~f~~L~~L~l~ 839 (913)
..+.++++|+.+.|.+ .++.|.. ..+.++++|+.+.+.
T Consensus 304 ~aF~~c~~L~~i~lp~--~l~~I~~----~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPT--ALKTIQV----YAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECT----TTTTTCTTCCCCCCC
T ss_pred hhhcCCCCCCEEEcCc--cccEEHH----HHhhCCCCCCEEEEC
Confidence 5677788888888853 2444421 134455666666653
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.71 E-value=0.014 Score=61.04 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+.++|++|+|||+||+.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999999885
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.66 E-value=0.026 Score=58.56 Aligned_cols=170 Identities=16% Similarity=0.198 Sum_probs=87.4
Q ss_pred ccCccccccchHHHHHHHHHHH---hc---------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC
Q 045843 155 HAKKMEEVPSLNKHLKMLQECL---RN---------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE 222 (913)
Q Consensus 155 ~~~~~~~~~gr~~~~~~l~~~L---~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (913)
+...+.+++|.++.++++.+.. .. .-.+-+.|+|++|+||||||+.++.... . ..+.+...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--~---~~i~~~~~-- 107 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASGS-- 107 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--C---CEEEEEHH--
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--C---CEEEecHH--
Confidence 3444567788887776665443 11 0112389999999999999999998764 2 22333221
Q ss_pred CCHHHHHHHHHHHccCCccCCChHHHHHHHHHHH-ccCCeEEEEeCCCCc------------cccc----ccc--CCCC-
Q 045843 223 GNIRDIQEVLLKRLDLRAEDHNIDQRADMISEEL-KDKSYVLFLDEVSTE------------INLR----DIG--IHDE- 282 (913)
Q Consensus 223 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~------------~~~~----~~~--~~~~- 282 (913)
++ .... . .........+.+.. ...+.++|+||+... ..+. .+. +..+
T Consensus 108 ----~~----~~~~-~----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 108 ----DF----VEMF-V----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp ----HH----HHST-T----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred ----HH----HHHH-h----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 11 1100 0 00111112222222 245689999998531 0011 110 0111
Q ss_pred -CCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCCC-CCCCChHHHHHHHHHHhCCcH
Q 045843 283 -HKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQL-KDCRDIKPVARLIINECGGMP 348 (913)
Q Consensus 283 -~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~I~~~c~GlP 348 (913)
.....++.||....+... ....+.++..+.++-.+++...+.... ..... ...+++.+.|..
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 222344455555444222 345788888888888888877654321 11112 234566666643
No 238
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.62 E-value=0.033 Score=62.45 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=91.9
Q ss_pred cCccccccchHHHHHHHHHHH---hcC---------CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC
Q 045843 156 AKKMEEVPSLNKHLKMLQECL---RNV---------GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG 223 (913)
Q Consensus 156 ~~~~~~~~gr~~~~~~l~~~L---~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (913)
...+.+++|.++.+.++.+.. .+. -.+-+.|+|++|+||||||+.+++... .. .+.+..+.-.
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~~---~i~i~g~~~~ 101 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VP---FITASGSDFV 101 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CC---EEEEEGGGGT
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---EEEEehhHHH
Confidence 344567789988777766554 221 123489999999999999999998764 22 2333332210
Q ss_pred CHHHHHHHHHHHccCCccCCChHHHHHHHHHHHcc----CCeEEEEeCCCCccc------------c----cccc--CC-
Q 045843 224 NIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKD----KSYVLFLDEVSTEIN------------L----RDIG--IH- 280 (913)
Q Consensus 224 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~----kr~LlVlDdv~~~~~------------~----~~~~--~~- 280 (913)
+ .........++..++. .+.++++||+..... + ..+. +.
T Consensus 102 ~------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 102 E------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp S------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred H------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0 0011122234444432 347999999964210 0 1110 00
Q ss_pred -CCCCCceEEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCCC-CCCCCChHHHHHHHHHHhCCcH
Q 045843 281 -DEHKNGKVVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGVQ-LKDCRDIKPVARLIINECGGMP 348 (913)
Q Consensus 281 -~~~~~s~iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~I~~~c~GlP 348 (913)
....+..|+.||....+... ....+.++..+.++-.+++..++... .....+ ...|++.+.|..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 12233455566665554322 34578898888888888887765332 111112 344666777754
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.61 E-value=0.011 Score=71.10 Aligned_cols=149 Identities=18% Similarity=0.261 Sum_probs=84.2
Q ss_pred ccccccchHHHHHHHHHHHhc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC
Q 045843 158 KMEEVPSLNKHLKMLQECLRN-------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN 224 (913)
Q Consensus 158 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (913)
.+.+++|.+..+++|.+++.. .....|.|+|++|+||||||+.+.+... ..| +.+..+.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~~~---i~v~~~~--- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFF---FLINGPE--- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--CEE---EEEEHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CcE---EEEEchH---
Confidence 345688998888888877632 2345799999999999999999987654 222 2232211
Q ss_pred HHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCCccc--------c-----ccc----cCCCCCCCce
Q 045843 225 IRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVSTEIN--------L-----RDI----GIHDEHKNGK 287 (913)
Q Consensus 225 ~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------~-----~~~----~~~~~~~~s~ 287 (913)
+.....+.........++........++++|++..... . ..+ .-.....+..
T Consensus 274 -----------l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 -----------IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----------HSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred -----------hhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 11111111111222233333445788999999854211 0 001 0001223345
Q ss_pred EEEEeechhhhhc-------CCceEEcccCChHHHHHHHHHHhCC
Q 045843 288 VVFACIFRNICGQ-------IDEEVNVQRLSGKDAQKLFWETVGV 325 (913)
Q Consensus 288 iivTTR~~~v~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~ 325 (913)
+|.||....-... ....+.+...+.++-.+++...+..
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 5556554322111 2345778888889998998876644
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.60 E-value=0.0013 Score=68.44 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=46.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEe--CCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccC
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTV--NSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDK 259 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~k 259 (913)
+++.|+|++|+||||||.++..... ..++|++. .+..+ .. ..+.+.....+.+.+...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~-------------~~--~~~le~~l~~i~~~l~~~ 183 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLS-------------GY--NTDFNVFVDDIARAMLQH 183 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSST-------------TC--BCCHHHHHHHHHHHHHHC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhh-------------hh--hcCHHHHHHHHHHHHhhC
Confidence 5678999999999999999987621 12356666 32211 00 134556666677777666
Q ss_pred CeEEEEeCCCCc
Q 045843 260 SYVLFLDEVSTE 271 (913)
Q Consensus 260 r~LlVlDdv~~~ 271 (913)
+ +||+|++...
T Consensus 184 ~-LLVIDsI~aL 194 (331)
T 2vhj_A 184 R-VIVIDSLKNV 194 (331)
T ss_dssp S-EEEEECCTTT
T ss_pred C-EEEEeccccc
Confidence 6 9999998753
No 241
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.59 E-value=0.0064 Score=60.65 Aligned_cols=85 Identities=11% Similarity=0.153 Sum_probs=53.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCC-----------ccC--CChHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLR-----------AED--HNIDQ 247 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~-----------~~~--~~~~~ 247 (913)
-.++.|+|++|+|||||+..+.. . .-..++|+.....++...+.+ +.+.++.. ... .....
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35999999999999999999987 2 124678888766556655543 33333221 111 11223
Q ss_pred HHHHHHHHHccCCeEEEEeCCCCc
Q 045843 248 RADMISEELKDKSYVLFLDEVSTE 271 (913)
Q Consensus 248 ~~~~l~~~l~~kr~LlVlDdv~~~ 271 (913)
....++..++.+.-+||+|.+...
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHHH
Confidence 444444454445789999998764
No 242
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.57 E-value=0.0044 Score=74.54 Aligned_cols=141 Identities=15% Similarity=0.243 Sum_probs=79.7
Q ss_pred cccchHHHHHHHHHHHhcC---------CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHH
Q 045843 161 EVPSLNKHLKMLQECLRNV---------GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++... ..-...+.+.++...+...
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~~~~---- 565 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYMEKHS---- 565 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCSSCC----
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhcccccc----
Confidence 4689999998888877321 123699999999999999999998763 2223345555554321000
Q ss_pred HHHHccCCccCCChHHHHHHHHHHHc-cCCeEEEEeCCCCccc--cccc-------cCC------CCCCCceEEEEeech
Q 045843 232 LLKRLDLRAEDHNIDQRADMISEELK-DKSYVLFLDEVSTEIN--LRDI-------GIH------DEHKNGKVVFACIFR 295 (913)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~--~~~~-------~~~------~~~~~s~iivTTR~~ 295 (913)
.. ...+.+.++ ...-+|+||++..... +..+ .+. .......||+||...
T Consensus 566 -----------~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 566 -----------TS----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -----------CC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred -----------cc----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 00 111122222 2345899999976421 1111 010 122456888888731
Q ss_pred h-----------------hhhcCCceEEcccCChHHHHHHHHHH
Q 045843 296 N-----------------ICGQIDEEVNVQRLSGKDAQKLFWET 322 (913)
Q Consensus 296 ~-----------------v~~~~~~~~~l~~L~~~~~~~Lf~~~ 322 (913)
. ........+.+.+++.++-.+++...
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 1 11113457888888888877777554
No 243
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.43 E-value=0.019 Score=65.71 Aligned_cols=46 Identities=33% Similarity=0.623 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHHh------cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 161 EVPSLNKHLKMLQECLR------NVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+++|.+...+.+.+.+. .....++.++|++|+||||||+.++....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35687777776655441 12456899999999999999999998774
No 244
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.18 E-value=0.028 Score=56.82 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=56.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC----CCceEEEEEeCCCCCHHHHHHHHHHHccCCc----------cCCChH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR----QFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA----------EDHNID 246 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~----------~~~~~~ 246 (913)
-.++.|+|++|+|||||+..+........ .-..++|+.....++...+. .+++.++... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35999999999999999999987543211 23578888877765655443 3444554332 112222
Q ss_pred H---HHHHHHHHHc-cCCeEEEEeCCCCc
Q 045843 247 Q---RADMISEELK-DKSYVLFLDEVSTE 271 (913)
Q Consensus 247 ~---~~~~l~~~l~-~kr~LlVlDdv~~~ 271 (913)
+ ....+.+.+. .+.-+||+|++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 2 2333555554 47789999998754
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.13 E-value=0.017 Score=61.78 Aligned_cols=85 Identities=14% Similarity=0.191 Sum_probs=58.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc------CCChHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE------DHNIDQRADMISE 254 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 254 (913)
-.++.|+|++|+||||||.++...... .=..++|+.....++.. .+++++...+ ..+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 359999999999999999999877642 22347788877766654 4455554332 2455666666666
Q ss_pred HHc-cCCeEEEEeCCCCcc
Q 045843 255 ELK-DKSYVLFLDEVSTEI 272 (913)
Q Consensus 255 ~l~-~kr~LlVlDdv~~~~ 272 (913)
.++ .+.-++|+|.+....
T Consensus 134 l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp HHHTSCCSEEEEECTTTCC
T ss_pred HhhhcCCCeEEehHhhhhc
Confidence 554 566799999987643
No 246
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.09 E-value=0.013 Score=58.94 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=60.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc--------------------
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE-------------------- 241 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-------------------- 241 (913)
.+++|+|++|+|||||++.+....... -..++|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 589999999999999999998655311 12355555433 4444444332 3332110
Q ss_pred ----CCChHHHHHHHHHHHc-cCCe--EEEEeCCCCcc--cc---cccc--C--CCCCCCceEEEEeech
Q 045843 242 ----DHNIDQRADMISEELK-DKSY--VLFLDEVSTEI--NL---RDIG--I--HDEHKNGKVVFACIFR 295 (913)
Q Consensus 242 ----~~~~~~~~~~l~~~l~-~kr~--LlVlDdv~~~~--~~---~~~~--~--~~~~~~s~iivTTR~~ 295 (913)
..+..+....+...+. .+.- +||+|.+.... +- ..+. + -....|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 1134455555555443 2444 99999987432 21 1110 0 0234578899998876
No 247
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.87 E-value=0.016 Score=61.18 Aligned_cols=42 Identities=12% Similarity=0.370 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhcC---CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 165 LNKHLKMLQECLRNV---GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 165 r~~~~~~l~~~L~~~---~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+...++.+.+++... ....+.++|++|+|||+||+.+++...
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 444555566666542 246889999999999999999998764
No 248
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.85 E-value=0.014 Score=58.65 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=51.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC----CCceEEEEEeCCCCCHHHHHHHHHHHccCCcc----------CCC--
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR----QFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----------DHN-- 244 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~-- 244 (913)
-.+++|+|+.|+|||||++.+........ .-...+|+.-...+.... ...+.+..+.... ...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 35999999999999999999987543211 134577877655444433 2333444433211 011
Q ss_pred -hHHHHHHHHHHHc------cCCeEEEEeCCCCc
Q 045843 245 -IDQRADMISEELK------DKSYVLFLDEVSTE 271 (913)
Q Consensus 245 -~~~~~~~l~~~l~------~kr~LlVlDdv~~~ 271 (913)
.......+.+.+. .+.-+||+|+....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 1111233333333 46779999998763
No 249
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.73 E-value=0.047 Score=58.47 Aligned_cols=89 Identities=11% Similarity=0.169 Sum_probs=57.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC----CCceEEEEEeCCCCCHHHHHHHHHHHccCCcc----------CCChH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR----QFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----------DHNID 246 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~~ 246 (913)
-.++.|+|++|+||||+|.+++....... .-..++|+.....++...+.+ +++.++.... ..+.+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCHH
Confidence 45899999999999999999987643211 234688999888777776654 3445544321 11222
Q ss_pred ---HHHHHHHHHHc---cCCeEEEEeCCCC
Q 045843 247 ---QRADMISEELK---DKSYVLFLDEVST 270 (913)
Q Consensus 247 ---~~~~~l~~~l~---~kr~LlVlDdv~~ 270 (913)
++...+...++ .+.-+||+|.+..
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 33344555554 4566899998764
No 250
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.67 E-value=0.088 Score=52.66 Aligned_cols=124 Identities=10% Similarity=0.082 Sum_probs=65.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEE-----EeCCCC-----CHHHH-----------HHHHHHHccCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWV-----TVNSEG-----NIRDI-----------QEVLLKRLDLR 239 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv-----~vs~~~-----~~~~i-----------~~~i~~~l~~~ 239 (913)
-.+++|+|+.|+|||||.+.+..-... ....+++ .+.+.+ ++.+- ...+++..+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~ 110 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLE 110 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC---CccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcH
Confidence 358999999999999999999865431 1222222 122321 11111 11222222110
Q ss_pred ---------c--------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCccccc------cccCCCCCCCceEEEEeech
Q 045843 240 ---------A--------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLR------DIGIHDEHKNGKVVFACIFR 295 (913)
Q Consensus 240 ---------~--------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~------~~~~~~~~~~s~iivTTR~~ 295 (913)
. .. +.-+...-.+...+-.++-+++||+.....|.. .........|..||++|.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~ 190 (229)
T 2pze_A 111 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190 (229)
T ss_dssp HHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCH
T ss_pred HHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCCh
Confidence 0 11 222333345566677788899999988764422 11111122366788888876
Q ss_pred hhhhcCCceEEc
Q 045843 296 NICGQIDEEVNV 307 (913)
Q Consensus 296 ~v~~~~~~~~~l 307 (913)
..+..++.++.+
T Consensus 191 ~~~~~~d~v~~l 202 (229)
T 2pze_A 191 EHLKKADKILIL 202 (229)
T ss_dssp HHHHHCSEEEEE
T ss_pred HHHHhCCEEEEE
Confidence 554334444444
No 251
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.60 E-value=0.049 Score=56.43 Aligned_cols=84 Identities=13% Similarity=0.201 Sum_probs=57.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccC------CChHHH-HHHHHHH
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAED------HNIDQR-ADMISEE 255 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~-~~~l~~~ 255 (913)
++-|.|++|+||||||.++.........=..++||.....++.. .+++++...+. .+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999887766421113468899888877764 26777765432 344554 3333222
Q ss_pred --H-ccCCeEEEEeCCCCc
Q 045843 256 --L-KDKSYVLFLDEVSTE 271 (913)
Q Consensus 256 --l-~~kr~LlVlDdv~~~ 271 (913)
+ +++.-+||+|-|...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 2 357789999998764
No 252
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.56 E-value=0.039 Score=59.08 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=57.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc------CCChHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE------DHNIDQRADMIS 253 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~ 253 (913)
.-.++.|+|++|+||||||.++..... ..=..++|+.....++.. .++.++...+ ..+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 346899999999999999999886654 222457899888776653 2455554322 134555555555
Q ss_pred HHHc-cCCeEEEEeCCCCc
Q 045843 254 EELK-DKSYVLFLDEVSTE 271 (913)
Q Consensus 254 ~~l~-~kr~LlVlDdv~~~ 271 (913)
...+ .+.-+||+|.+...
T Consensus 133 ~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHTTTCCSEEEEECGGGC
T ss_pred HHHhcCCCCEEEEcChHhh
Confidence 5543 45679999998654
No 253
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.55 E-value=0.034 Score=59.15 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=58.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCC----CceEEEEEeCCCCCHHHHHHHHHHHccCCcc----------CCChH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQ----FDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----------DHNID 246 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~~ 246 (913)
-.++.|+|.+|+||||+|.+++........ -..++|+.....++.+.+.+ +++.++...+ ..+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 459999999999999999999876532111 24688998888777776654 3455554321 12222
Q ss_pred ---HHHHHHHHHHc--cCCeEEEEeCCCC
Q 045843 247 ---QRADMISEELK--DKSYVLFLDEVST 270 (913)
Q Consensus 247 ---~~~~~l~~~l~--~kr~LlVlDdv~~ 270 (913)
+....+...++ .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 23445555554 4567999998764
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.55 E-value=0.01 Score=72.30 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHHhcC---------CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 161 EVPSLNKHLKMLQECLRNV---------GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.++|.+..++.+...+... ....+.|+|+.|+|||++|+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999888888777321 12478999999999999999999876
No 255
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.50 E-value=0.037 Score=56.75 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=69.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC-----------CC------ceEEEEEeCCC----C----------------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR-----------QF------DFIFWVTVNSE----G---------------- 223 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-----------~F------~~~~wv~vs~~----~---------------- 223 (913)
-.+++|+|+.|+|||||++.+..-..... .. ..+.++.-... .
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 116 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGS 116 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCST
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcH
Confidence 35899999999999999999875332110 00 01222211000 1
Q ss_pred CHHHHHHHHHHHccCCcc------C-CChHHHHHHHHHHHcc------CCeEEEEeCCCCcccccc-------ccCCCCC
Q 045843 224 NIRDIQEVLLKRLDLRAE------D-HNIDQRADMISEELKD------KSYVLFLDEVSTEINLRD-------IGIHDEH 283 (913)
Q Consensus 224 ~~~~i~~~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~------kr~LlVlDdv~~~~~~~~-------~~~~~~~ 283 (913)
...+...++++.++.... . +.-+...-.+...|-. ++-+|+||+.....|... +.--...
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 117 QDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp THHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence 122334556666654321 1 2223333445566655 899999999887654321 1100223
Q ss_pred CCceEEEEeechhhhhc-CCceEEc
Q 045843 284 KNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 284 ~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
.+..||++|.+-..+.. ++.++.+
T Consensus 197 ~~~tvi~vtHdl~~~~~~~d~v~vl 221 (266)
T 4g1u_C 197 EPLAVCCVLHDLNLAALYADRIMLL 221 (266)
T ss_dssp SSEEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCCEEEEEEcCHHHHHHhCCEEEEE
Confidence 35578888888766554 5554444
No 256
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.43 E-value=0.068 Score=54.39 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=68.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC---CC-------------ceEEEEEeCCCC------CHHH-----------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR---QF-------------DFIFWVTVNSEG------NIRD----------- 227 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~F-------------~~~~wv~vs~~~------~~~~----------- 227 (913)
-.+++|+|+.|+|||||.+.++.-..... .| ..+.++ .+.+ ++.+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v--~q~~~l~~~ltv~enl~~~~~~~~~ 118 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL--PEEAGAYRNMQGIEYLRFVAGFYAS 118 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE--CTTCCCCTTSBHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE--cCCCCCCCCCcHHHHHHHHHHHcCC
Confidence 35899999999999999999975432100 00 012222 2221 1111
Q ss_pred -------HHHHHHHHccCCcc------C-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc---c---cCCCCCCCce
Q 045843 228 -------IQEVLLKRLDLRAE------D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD---I---GIHDEHKNGK 287 (913)
Q Consensus 228 -------i~~~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~---~---~~~~~~~~s~ 287 (913)
...++++.++.... . +.-+...-.+...+-.++-+|+||+.....|-.. + .......|..
T Consensus 119 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~t 198 (256)
T 1vpl_A 119 SSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198 (256)
T ss_dssp CHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCE
Confidence 12334455544321 1 2223334455667777889999999887644221 1 0001123778
Q ss_pred EEEEeechhhhhc-CCceEEc
Q 045843 288 VVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 288 iivTTR~~~v~~~-~~~~~~l 307 (913)
||++|.+...+.. ++.++.+
T Consensus 199 iiivtHd~~~~~~~~d~v~~l 219 (256)
T 1vpl_A 199 ILVSSHNMLEVEFLCDRIALI 219 (256)
T ss_dssp EEEEECCHHHHTTTCSEEEEE
T ss_pred EEEEcCCHHHHHHHCCEEEEE
Confidence 8888888665544 4444444
No 257
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.39 E-value=0.022 Score=68.43 Aligned_cols=45 Identities=29% Similarity=0.405 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHHHhc---------CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 161 EVPSLNKHLKMLQECLRN---------VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+.+..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 467999988888877632 123378999999999999999999877
No 258
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.39 E-value=0.07 Score=56.98 Aligned_cols=126 Identities=12% Similarity=0.110 Sum_probs=72.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccC---CC-----------------ceEEEEEeCCCC------CHH-------
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESR---QF-----------------DFIFWVTVNSEG------NIR------- 226 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~F-----------------~~~~wv~vs~~~------~~~------- 226 (913)
.-.+++|+|+.|+|||||.+.+..-.+... .| ..+.+| .+.+ ++.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v--~Q~~~l~~~~TV~env~~~~ 130 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMI--FQHFNLLSSRTVFGNVALPL 130 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEE--CSSCCCCTTSCHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEE--eCCCccCCCCCHHHHHHHHH
Confidence 345899999999999999999875432110 00 012222 1221 111
Q ss_pred -----------HHHHHHHHHccCCcc------C-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc-------ccCCC
Q 045843 227 -----------DIQEVLLKRLDLRAE------D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD-------IGIHD 281 (913)
Q Consensus 227 -----------~i~~~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~-------~~~~~ 281 (913)
+...++++.++.... . +.-+...-.+...|-.++-+|++|+..+..|-.. +.--.
T Consensus 131 ~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~ 210 (366)
T 3tui_C 131 ELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210 (366)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 123345555554321 1 2233444456777888899999999988654321 11002
Q ss_pred CCCCceEEEEeechhhhhc-CCceEEc
Q 045843 282 EHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 282 ~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
...|..||++|.+..++.. ++.++-|
T Consensus 211 ~~~g~Tii~vTHdl~~~~~~aDrv~vl 237 (366)
T 3tui_C 211 RRLGLTILLITHEMDVVKRICDCVAVI 237 (366)
T ss_dssp HHSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 3347889999998777655 5555544
No 259
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.30 E-value=0.059 Score=57.75 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=56.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc------CCChHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE------DHNIDQRADMIS 253 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~ 253 (913)
.-.++.|.|.+|+||||||.++..... ..-..++|+.....++... +..++...+ ..+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346899999999999999999887654 2224688999877776442 445554321 123455555554
Q ss_pred HHHc-cCCeEEEEeCCCCc
Q 045843 254 EELK-DKSYVLFLDEVSTE 271 (913)
Q Consensus 254 ~~l~-~kr~LlVlDdv~~~ 271 (913)
...+ .+.-+||+|.+...
T Consensus 135 ~l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHHTCCSEEEEECGGGC
T ss_pred HHHhccCCCEEEEcCHHHh
Confidence 4443 45669999997643
No 260
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.26 E-value=0.055 Score=55.02 Aligned_cols=124 Identities=17% Similarity=0.214 Sum_probs=69.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhccc-CC---CceEEEEEeCCCC------CH----------------------HHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGES-RQ---FDFIFWVTVNSEG------NI----------------------RDIQ 229 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~---F~~~~wv~vs~~~------~~----------------------~~i~ 229 (913)
.+++|+|+.|+|||||.+.+..-.... +. ...+.++. +.+ ++ .+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~--q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVP--QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEEC--SCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEc--CCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHH
Confidence 589999999999999999998654311 00 01122221 110 11 1223
Q ss_pred HHHHHHccCCcc------C-CChHHHHHHHHHHHccCCeEEEEeCCCCccccccc-------cCCCCCCCceEEEEeech
Q 045843 230 EVLLKRLDLRAE------D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDI-------GIHDEHKNGKVVFACIFR 295 (913)
Q Consensus 230 ~~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~-------~~~~~~~~s~iivTTR~~ 295 (913)
.++++.++.... . +.-+...-.+...+-.++-+|+||+.....|.... .--....|..||++|.+.
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 110 MQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189 (253)
T ss_dssp HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred HHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 445555554321 1 22233344556667778889999998886553221 100123367788888886
Q ss_pred hhhhc-CCceEEc
Q 045843 296 NICGQ-IDEEVNV 307 (913)
Q Consensus 296 ~v~~~-~~~~~~l 307 (913)
..+.. ++.++.+
T Consensus 190 ~~~~~~~d~v~~l 202 (253)
T 2nq2_C 190 NQVVAIANKTLLL 202 (253)
T ss_dssp HHHHHHCSEEEEE
T ss_pred HHHHHhCCEEEEE
Confidence 65543 5555544
No 261
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.16 E-value=0.069 Score=57.40 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=57.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCcc------CCChHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE------DHNIDQRADMISE 254 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~------~~~~~~~~~~l~~ 254 (913)
-.++.|.|.+|+||||||.++..... ..-..++|+.....++.. .++.++.... ..+.++....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 35899999999999999999887654 222468899988777654 2445554321 2345666666666
Q ss_pred HHc-cCCeEEEEeCCCCc
Q 045843 255 ELK-DKSYVLFLDEVSTE 271 (913)
Q Consensus 255 ~l~-~kr~LlVlDdv~~~ 271 (913)
..+ .+.-+||+|.+...
T Consensus 147 l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHTTTCCSEEEEECTTTC
T ss_pred HHhcCCCCEEEEeChHHh
Confidence 554 45569999998654
No 262
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.12 E-value=0.01 Score=58.97 Aligned_cols=110 Identities=15% Similarity=-0.007 Sum_probs=61.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccC---CChHHHHHHHHHHHc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAED---HNIDQRADMISEELK 257 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~ 257 (913)
-.++.|.|..|+||||++..+.++.. .+-..++.+.-.... . -...|++.++..... ....+....+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 46889999999999999998888775 222233444333321 1 222445555543322 233444444444444
Q ss_pred cCCe-EEEEeCCCCcc--ccccccCCCCCCCceEEEEeechh
Q 045843 258 DKSY-VLFLDEVSTEI--NLRDIGIHDEHKNGKVVFACIFRN 296 (913)
Q Consensus 258 ~kr~-LlVlDdv~~~~--~~~~~~~~~~~~~s~iivTTR~~~ 296 (913)
+.++ +||+|++.... ..+.+.... ..|-.||+|-+..+
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~L~-~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANILA-ENGFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHHHH-HTTCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcHHHHHHHHHHH-hCCCeEEEEecccc
Confidence 4444 99999997532 112221111 13788888888543
No 263
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.05 E-value=0.022 Score=55.87 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHhc---CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 164 SLNKHLKMLQECLRN---VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 164 gr~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+|+..++++.+.+.. ....+|+|.|+.|+||||+++.+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456677778777743 3456999999999999999999987653
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.05 E-value=0.071 Score=55.61 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=45.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC-CCCHHHHHHHHHHHccCCccC-CChHHHHHHHHHHHc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS-EGNIRDIQEVLLKRLDLRAED-HNIDQRADMISEELK 257 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~ 257 (913)
...+++++|++|+||||++..+.......... .+..+.... .....+-+....+..+..... .+...+...+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh-
Confidence 35699999999999999999998766532222 234444322 223333344433333332211 22233333333 23
Q ss_pred cCCeEEEEeC
Q 045843 258 DKSYVLFLDE 267 (913)
Q Consensus 258 ~kr~LlVlDd 267 (913)
.+.=++|+|-
T Consensus 181 ~~~dlvIiDT 190 (296)
T 2px0_A 181 SEYDHVFVDT 190 (296)
T ss_dssp GGSSEEEEEC
T ss_pred cCCCEEEEeC
Confidence 4456888994
No 265
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.95 E-value=0.059 Score=57.21 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=57.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC---------CC-----ceEEEEEeCCCCCHHHHHHHHHHHccCCcc-----
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR---------QF-----DFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----- 241 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----- 241 (913)
-.++.|+|.+|+||||+|.+++....... .. ..++|+.....++.+++.+ +++.++....
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 46899999999999999999987642211 11 4788998888877777664 3455544321
Q ss_pred -----CCChH---HHHHHHHHHHcc--CCeEEEEeCCCC
Q 045843 242 -----DHNID---QRADMISEELKD--KSYVLFLDEVST 270 (913)
Q Consensus 242 -----~~~~~---~~~~~l~~~l~~--kr~LlVlDdv~~ 270 (913)
..+.+ +....+.+.++. +.-+||+|.+..
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 12222 234455555543 456899998764
No 266
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.88 E-value=0.12 Score=56.19 Aligned_cols=89 Identities=12% Similarity=0.152 Sum_probs=54.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC----CCceEEEEEeCCCCCHHHHHHHHHHHccCCcc----------CCChH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR----QFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----------DHNID 246 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~~~~~ 246 (913)
-.++.|+|++|+|||||+..++-...... .-..++|+.....++..++. .+++.++...+ ..+.+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 35999999999999999998764432211 23468888877766665543 35666654321 11222
Q ss_pred ---HHHHHHHHHHc-cCCeEEEEeCCCC
Q 045843 247 ---QRADMISEELK-DKSYVLFLDEVST 270 (913)
Q Consensus 247 ---~~~~~l~~~l~-~kr~LlVlDdv~~ 270 (913)
+....+.+.+. .+.-+||+|.+..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22233333333 4677999998654
No 267
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.74 E-value=0.024 Score=55.91 Aligned_cols=40 Identities=28% Similarity=0.413 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhc--CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 167 KHLKMLQECLRN--VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 167 ~~~~~l~~~L~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+-+++|.+.+.. ..-.+|+|+|+.|+|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345566666543 3456999999999999999999987664
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.71 E-value=0.076 Score=56.90 Aligned_cols=91 Identities=13% Similarity=0.220 Sum_probs=56.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCC----ceEEEEEeCCCCCHHHHHHHHHHHccCCcc----------C---
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQF----DFIFWVTVNSEGNIRDIQEVLLKRLDLRAE----------D--- 242 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----------~--- 242 (913)
.-.++.|+|+.|+|||||+..++......... ..++|+.....+....+ ..+.+..+.... .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 34699999999999999999998765311111 24588887665544443 334444432210 0
Q ss_pred CChHHHHHHHHHHHc------cCCeEEEEeCCCCc
Q 045843 243 HNIDQRADMISEELK------DKSYVLFLDEVSTE 271 (913)
Q Consensus 243 ~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~ 271 (913)
....+....+...+. .+.-+||+|.+...
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 112233444555554 47789999998764
No 269
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.57 E-value=0.65 Score=62.35 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=49.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCe
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSY 261 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~ 261 (913)
+-+-++|++|+|||++|+.+.... ..+ ..+.+..+...+...+++.+-..+.........- ....-.+|+.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~-----~~P~~~gk~~ 1338 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT-----LLPKSDIKNL 1338 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE-----EEEBSSSSCE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc-----ccCCCCCceE
Confidence 467899999999999998776553 223 3456777777777777777766554321000000 0000036788
Q ss_pred EEEEeCCCC
Q 045843 262 VLFLDEVST 270 (913)
Q Consensus 262 LlVlDdv~~ 270 (913)
+|.+||+.-
T Consensus 1339 VlFiDEinm 1347 (2695)
T 4akg_A 1339 VLFCDEINL 1347 (2695)
T ss_dssp EEEEETTTC
T ss_pred EEEeccccc
Confidence 999999654
No 270
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.54 E-value=1.1 Score=47.26 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+++|+|+.|+||||+++.+....+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999987665
No 271
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.51 E-value=0.093 Score=55.95 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=70.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC---CC------------ceEEEEEeCCC------CCHH-------------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR---QF------------DFIFWVTVNSE------GNIR------------- 226 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~F------------~~~~wv~vs~~------~~~~------------- 226 (913)
-.+++|+|+.|+|||||.+.++.-..... .| ..+.+| .+. .++.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~l~~~~~~ 118 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLV--FQNYALFQHMTVYDNVSFGLREKRVP 118 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEE--CGGGCCCTTSCHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEE--ecCcccCCCCCHHHHHHHHHHHcCCC
Confidence 35899999999999999999985432110 00 012222 221 1111
Q ss_pred -----HHHHHHHHHccCCcc------C-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc-------ccCCCCCCCce
Q 045843 227 -----DIQEVLLKRLDLRAE------D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD-------IGIHDEHKNGK 287 (913)
Q Consensus 227 -----~i~~~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~-------~~~~~~~~~s~ 287 (913)
+...++++.++...- . +.-+...-.|...|-.++-+|+||+--...|... +.--....|..
T Consensus 119 ~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 198 (355)
T 1z47_A 119 KDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198 (355)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 123345555554321 1 2233344456677778899999999887654221 11001223677
Q ss_pred EEEEeechhhhhc-CCceEEc
Q 045843 288 VVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 288 iivTTR~~~v~~~-~~~~~~l 307 (913)
||++|.+...+.. ++.++.|
T Consensus 199 vi~vTHd~~~a~~~adri~vl 219 (355)
T 1z47_A 199 SVFVTHDQEEALEVADRVLVL 219 (355)
T ss_dssp EEEECSCHHHHHHHCSEEEEE
T ss_pred EEEECCCHHHHHHhCCEEEEE
Confidence 8888888766554 5555444
No 272
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.48 E-value=0.034 Score=59.11 Aligned_cols=95 Identities=16% Similarity=0.258 Sum_probs=53.0
Q ss_pred HHHHHHhc-CCCcEEEEECCCCCcHHHHHHHHHHHhccc-CCCceEEEEEeCCCCC-HHHHHHHHHHHccCC----ccCC
Q 045843 171 MLQECLRN-VGTKRICIWGPPGVGKTTIMENLHDAIGES-RQFDFIFWVTVNSEGN-IRDIQEVLLKRLDLR----AEDH 243 (913)
Q Consensus 171 ~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~----~~~~ 243 (913)
++++.+.. ..-..++|+|+.|+|||||++.+.+..... ..+++ +++-+.+... +.++. +.+... ..+.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~~~----~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTEMQ----RLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHHHH----TTCSSEEEEECTTS
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHHHH----HHhCeEEEEeCCCC
Confidence 34455432 233589999999999999999988765321 23334 4577776532 23332 222110 0111
Q ss_pred C-hH-----HHHHHHHHHH--ccCCeEEEEeCCCC
Q 045843 244 N-ID-----QRADMISEEL--KDKSYVLFLDEVST 270 (913)
Q Consensus 244 ~-~~-----~~~~~l~~~l--~~kr~LlVlDdv~~ 270 (913)
. .. ...-.+.+++ +++..||++||+..
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 1 11 1111223444 48999999999865
No 273
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.38 E-value=0.1 Score=55.50 Aligned_cols=124 Identities=17% Similarity=0.145 Sum_probs=70.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEE----------------EeCCCC------CHH------------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWV----------------TVNSEG------NIR------------ 226 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv----------------~vs~~~------~~~------------ 226 (913)
-.+++|+|+.|+|||||.+.++.-... ....+++ .|.+.+ ++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~ 102 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCCC---CCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC
Confidence 358999999999999999999854321 1112211 122221 211
Q ss_pred ---HHHHHHHHHccCCcc------C-CChHHHHHHHHHHHccCCeEEEEeCCCCccccc-------cccCCCCCCCceEE
Q 045843 227 ---DIQEVLLKRLDLRAE------D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLR-------DIGIHDEHKNGKVV 289 (913)
Q Consensus 227 ---~i~~~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~-------~~~~~~~~~~s~ii 289 (913)
+-..++++.++...- . +.-+...-.|...|-.++-+|+||+--...|.. .+.--....|..||
T Consensus 103 ~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 182 (348)
T 3d31_A 103 KDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182 (348)
T ss_dssp CCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 123345555554321 1 223334445677777889999999988764422 11100223467788
Q ss_pred EEeechhhhhc-CCceEEc
Q 045843 290 FACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 290 vTTR~~~v~~~-~~~~~~l 307 (913)
++|.+...+.. ++.++.|
T Consensus 183 ~vTHd~~~~~~~adri~vl 201 (348)
T 3d31_A 183 HITHDQTEARIMADRIAVV 201 (348)
T ss_dssp EEESCHHHHHHHCSEEEEE
T ss_pred EEeCCHHHHHHhCCEEEEE
Confidence 88888665544 5555544
No 274
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.37 E-value=0.13 Score=55.19 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=70.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC---CC------------ceEEEEEeCCCC------CH--------------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR---QF------------DFIFWVTVNSEG------NI-------------- 225 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~F------------~~~~wv~vs~~~------~~-------------- 225 (913)
-.+++|+|+.|+|||||.+.+..-..... .| ..+.+| .+.+ ++
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V--fQ~~~l~p~ltV~eni~~~~~~~~~~ 106 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV--FQSYALYPHLSVAENMSFGLKLAGAK 106 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE--CTTCCCCTTSCHHHHHTHHHHHTTCC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE--ecCCcCCCCCCHHHHHHHHHHHcCCC
Confidence 35899999999999999999986432110 00 012222 2221 11
Q ss_pred ----HHHHHHHHHHccCCcc------C-CChHHHHHHHHHHHccCCeEEEEeCCCCccccc-------cccCCCCCCCce
Q 045843 226 ----RDIQEVLLKRLDLRAE------D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLR-------DIGIHDEHKNGK 287 (913)
Q Consensus 226 ----~~i~~~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~-------~~~~~~~~~~s~ 287 (913)
.+...++++.++.... . +.-+...-.|...|-.++-+|+||+--...|.. .+.--....|..
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~t 186 (381)
T 3rlf_A 107 KEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186 (381)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 1223455555554321 1 223333445666777788899999988765422 111002233778
Q ss_pred EEEEeechhhhhc-CCceEEc
Q 045843 288 VVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 288 iivTTR~~~v~~~-~~~~~~l 307 (913)
||++|.+...+.. ++.++-|
T Consensus 187 ii~vTHd~~ea~~~aDri~vl 207 (381)
T 3rlf_A 187 MIYVTHDQVEAMTLADKIVVL 207 (381)
T ss_dssp EEEECSCHHHHHHHCSEEEEE
T ss_pred EEEEECCHHHHHHhCCEEEEE
Confidence 8888888765554 5544444
No 275
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.37 E-value=0.056 Score=48.58 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=25.5
Q ss_pred EEeccCCccc--ccCccccCccCcceeecCCccCccccChh-hhccccCCEEecCCCcC
Q 045843 556 LLDLHDTKIK--LLPSSISSLTNLKALFLNNCCQLMRLPAE-VGDLHNLEILDLSHTGI 611 (913)
Q Consensus 556 ~LdLs~~~i~--~lp~~i~~L~~L~~L~L~~c~~l~~lP~~-i~~L~~L~~L~L~~~~~ 611 (913)
+++.++++++ .+|..+. .+|++|+|++ +.++.+|.. +..+.+|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 4444444444 4443221 2355555555 445544433 34555566666665544
No 276
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.36 E-value=0.24 Score=54.32 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|.++|.+|+||||++..++....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999887665
No 277
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.35 E-value=0.17 Score=53.97 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=71.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccC---CCc----------------eEEEEEeCCCC------CH----------
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESR---QFD----------------FIFWVTVNSEG------NI---------- 225 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~F~----------------~~~wv~vs~~~------~~---------- 225 (913)
-.+++|+|+.|+|||||.+.+..-..... .|+ .+.+| .+.+ ++
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~v--fQ~~~l~p~ltV~eni~~~l~~ 107 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYL--VQEGVLFPHLTVYRNIAYGLGN 107 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEE--CTTCCCCTTSCHHHHHHTTSTT
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEE--eCCCcCCCCCCHHHHHHHHHHH
Confidence 35899999999999999999986432110 000 11121 1111 11
Q ss_pred --------HHHHHHHHHHccCCcc------C-CChHHHHHHHHHHHccCCeEEEEeCCCCccccc---c----ccCCCCC
Q 045843 226 --------RDIQEVLLKRLDLRAE------D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLR---D----IGIHDEH 283 (913)
Q Consensus 226 --------~~i~~~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~---~----~~~~~~~ 283 (913)
.+-..++++.++...- . +.-+...-.|...|-.++-+|+||+--...|.. . +.-....
T Consensus 108 ~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~ 187 (359)
T 3fvq_A 108 GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA 187 (359)
T ss_dssp SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1233455666554321 1 223444445667777888999999988764422 1 1111234
Q ss_pred CCceEEEEeechhhhhc-CCceEEc
Q 045843 284 KNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 284 ~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
.|..||++|.+...+.. ++.++-|
T Consensus 188 ~g~tvi~vTHd~~ea~~~aDri~vl 212 (359)
T 3fvq_A 188 NGKSAVFVSHDREEALQYADRIAVM 212 (359)
T ss_dssp TTCEEEEECCCHHHHHHHCSEEEEE
T ss_pred CCCEEEEEeCCHHHHHHHCCEEEEE
Confidence 57788888888766554 5554444
No 278
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.31 E-value=0.024 Score=53.90 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 544
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.30 E-value=0.027 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988764
No 280
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.29 E-value=0.032 Score=53.62 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=63.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC---CCHHHHHHHHH---HHccC----CccC-----CCh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE---GNIRDIQEVLL---KRLDL----RAED-----HNI 245 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~i~~~i~---~~l~~----~~~~-----~~~ 245 (913)
-..|-|++..|.||||.|-...-+.- .+=..+.++...+. ....++++.+- .+.+. ..+. ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~--g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV--GHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH--HTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 35667777777999999987766554 33333445543332 23334333330 00000 0000 011
Q ss_pred HHHHHHHHHHHccC-CeEEEEeCCCCc-----ccccccc--CCCCCCCceEEEEeechhhhhc--CCceEEccc
Q 045843 246 DQRADMISEELKDK-SYVLFLDEVSTE-----INLRDIG--IHDEHKNGKVVFACIFRNICGQ--IDEEVNVQR 309 (913)
Q Consensus 246 ~~~~~~l~~~l~~k-r~LlVlDdv~~~-----~~~~~~~--~~~~~~~s~iivTTR~~~v~~~--~~~~~~l~~ 309 (913)
.......++.+.+. -=|||||++-.. ...+.+. +........||+|+|...-.-. ++.+-+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 22233445555444 459999998542 2222221 1145567889999998643222 444444443
No 281
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.23 E-value=0.1 Score=61.71 Aligned_cols=93 Identities=22% Similarity=0.410 Sum_probs=56.1
Q ss_pred cccccchHHHHHHHHHHHhc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCH
Q 045843 159 MEEVPSLNKHLKMLQECLRN-------------VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNI 225 (913)
Q Consensus 159 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (913)
..++.|.++.+++|.+.+.- ...+-|-++|++|+|||.+|+.+++... . -++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~-----~f~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--A-----NFISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--C-----EEEECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--C-----ceEEecc----
Confidence 34566888888887766521 1234678999999999999999998875 2 2333322
Q ss_pred HHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCeEEEEeCCCC
Q 045843 226 RDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSYVLFLDEVST 270 (913)
Q Consensus 226 ~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 270 (913)
.+ ++. ..-+.+...+.......-+..+.+|++|+++.
T Consensus 545 ~~----l~s----~~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 PE----LLT----MWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HH----HHT----TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ch----hhc----cccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 11 111 11122222222222333345789999999875
No 282
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.22 E-value=0.36 Score=51.53 Aligned_cols=161 Identities=7% Similarity=-0.055 Sum_probs=97.5
Q ss_pred HHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHH
Q 045843 172 LQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADM 251 (913)
Q Consensus 172 l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~ 251 (913)
+.+.+.+.-.++..++|+.|.||++.++.+.+...- ..|+....+.+....++.++...+..
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~----------------- 70 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA-QGFEEHHTFSIDPNTDWNAIFSLCQA----------------- 70 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHH-HTCCEEEEEECCTTCCHHHHHHHHHH-----------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHh-CCCCeeEEEEecCCCCHHHHHHHhcC-----------------
Confidence 444454445678999999999999999998876531 23432222233333444443333211
Q ss_pred HHHHHccCCeEEEEeCCCC-c--ccccccc--CCCCCCCceEEEEeec-------hhhhhc---CCceEEcccCChHHHH
Q 045843 252 ISEELKDKSYVLFLDEVST-E--INLRDIG--IHDEHKNGKVVFACIF-------RNICGQ---IDEEVNVQRLSGKDAQ 316 (913)
Q Consensus 252 l~~~l~~kr~LlVlDdv~~-~--~~~~~~~--~~~~~~~s~iivTTR~-------~~v~~~---~~~~~~l~~L~~~~~~ 316 (913)
.-+-+++-++|+|++.. . ..++.+. +.....++.+|++|.. ..+... .+..+...+++.++-.
T Consensus 71 --~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 71 --MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLP 148 (343)
T ss_dssp --HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHH
T ss_pred --cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHH
Confidence 12346788999999866 2 3333331 1123456777766643 123222 4568899999999988
Q ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHhCCcHHHHHHH
Q 045843 317 KLFWETVGVQLKDCRDIKPVARLIINECGGMPHMIKLI 354 (913)
Q Consensus 317 ~Lf~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 354 (913)
..+.+.+... ...--++....+++.++|.+.++...
T Consensus 149 ~~l~~~~~~~--g~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 149 RWVAARAKQL--NLELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHHHT--TCEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHHc--CCCCCHHHHHHHHHHhchHHHHHHHH
Confidence 8887776432 11223567888999999988777653
No 283
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.22 E-value=0.011 Score=63.35 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=62.7
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHcc
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKD 258 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 258 (913)
..-.+++|+|+.|+||||+.+.+....... ....+ +++.+..... .......+...............+...|..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i-~t~ed~~e~~--~~~~~~~v~q~~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHI-LTIEDPIEFV--HESKKCLVNQREVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEE-EEEESSCCSC--CCCSSSEEEEEEBTTTBSCHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEE-EEccCcHHhh--hhccccceeeeeeccccCCHHHHHHHHhhh
Confidence 334599999999999999999987654311 11122 2222221100 000000000000011223445578888999
Q ss_pred CCeEEEEeCCCCccccccccCCCCCCCceEEEEeechhhh
Q 045843 259 KSYVLFLDEVSTEINLRDIGIHDEHKNGKVVFACIFRNIC 298 (913)
Q Consensus 259 kr~LlVlDdv~~~~~~~~~~~~~~~~~s~iivTTR~~~v~ 298 (913)
++=+|++|++.+.+.++.+.- ....|..||+||...+.+
T Consensus 196 ~PdvillDEp~d~e~~~~~~~-~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALT-AAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHH-HHHTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCCHHHHHHHHH-HHhcCCEEEEEEccChHH
Confidence 999999999997655443211 123466688888766543
No 284
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.20 E-value=0.027 Score=53.83 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 285
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.16 E-value=0.052 Score=48.83 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=26.8
Q ss_pred EEeeccCccc--cCchHHHhcCCcccEEeccCCcccccCcc-ccCccCcceeecCCc
Q 045843 532 TLLLQESSLA--ELPASFFGYMCSLQLLDLHDTKIKLLPSS-ISSLTNLKALFLNNC 585 (913)
Q Consensus 532 ~L~l~~~~l~--~l~~~~f~~l~~Lr~LdLs~~~i~~lp~~-i~~L~~L~~L~L~~c 585 (913)
+++.+++.++ .+|..+ -.+|++|+|++|.|+.+|.. +..+.+|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444444554 555422 23456666666666665543 445566666666653
No 286
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.12 E-value=0.047 Score=54.48 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 167 KHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 167 ~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+.+.+.+......+|+|+|.+|+|||||+..+.....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3345555555556778999999999999999999987754
No 287
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.10 E-value=0.03 Score=54.76 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|.|+|+.|+||||+|+.+.....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 288
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.98 E-value=0.4 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..++.++|++|+||||++..+.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987775
No 289
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.96 E-value=0.12 Score=50.50 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|.|+.|+||||+|+.+.+...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 446899999999999999999987653
No 290
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.94 E-value=0.032 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.+++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 291
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.93 E-value=0.064 Score=56.71 Aligned_cols=44 Identities=27% Similarity=0.330 Sum_probs=33.0
Q ss_pred cchHHHHHHHHHHHh----cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 163 PSLNKHLKMLQECLR----NVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 163 ~gr~~~~~~l~~~L~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
++.+.-.+++++.+. .+....|.|+|+.|+||||+++.++....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 345556666666653 34556799999999999999999987664
No 292
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.93 E-value=0.13 Score=56.65 Aligned_cols=87 Identities=17% Similarity=0.295 Sum_probs=52.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC-CHHHHHHHHHHHccCC--------ccCC-ChHH----H
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLR--------AEDH-NIDQ----R 248 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~--------~~~~-~~~~----~ 248 (913)
.++|+|..|+|||||++.+....... .-+..+++-+.+.. ...++.+++.+.-... ..+. .... .
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 68999999999999999998776522 22445677777754 3455555554321000 0111 1111 1
Q ss_pred HHHHHHHH---ccCCeEEEEeCCCC
Q 045843 249 ADMISEEL---KDKSYVLFLDEVST 270 (913)
Q Consensus 249 ~~~l~~~l---~~kr~LlVlDdv~~ 270 (913)
.-.+.+++ ++++.||++||+..
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHHH
Confidence 12334444 47899999999865
No 293
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.92 E-value=0.029 Score=60.41 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=36.7
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+.+++|.+..++.+...+......-+.|+|++|+|||++|+.+.+...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34556889988666554444333334589999999999999999998664
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.91 E-value=0.031 Score=53.10 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988754
No 295
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.88 E-value=0.41 Score=52.61 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..++|.++|.+|+||||++..+.....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999987776
No 296
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.83 E-value=0.046 Score=54.30 Aligned_cols=43 Identities=33% Similarity=0.458 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 164 SLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 164 gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+.++..+.+...+......+|+|+|.+|+|||||+..+.....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4445556666666556778999999999999999999987764
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.82 E-value=0.036 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+.|.|+|+.|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998764
No 298
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.80 E-value=0.23 Score=54.39 Aligned_cols=87 Identities=18% Similarity=0.122 Sum_probs=46.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC--HHHHHHHHHHHccCCccC----CChHHHH-HHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN--IRDIQEVLLKRLDLRAED----HNIDQRA-DMIS 253 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~----~~~~~~~-~~l~ 253 (913)
..+|.++|++|+||||++..+......+ .. .+..+... .+. ..+-+....+..+..... .+..... ..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~-kVllv~~D-~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR-GY-KVGLVAAD-VYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT-TC-CEEEEEEC-CSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CC-eEEEEecC-ccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 5799999999999999999998777532 22 23333332 233 223344444544443211 2222222 2233
Q ss_pred HHHccCCeEEEEeCCCC
Q 045843 254 EELKDKSYVLFLDEVST 270 (913)
Q Consensus 254 ~~l~~kr~LlVlDdv~~ 270 (913)
.......=++|+|-...
T Consensus 174 ~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HTTTTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCC
Confidence 32223445677887653
No 299
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.80 E-value=0.33 Score=51.07 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=37.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
-.++.|.|.+|+||||+|.+++......+ ..++|++.- .+...+...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 35899999999999999999987665322 567777655 4566666666544
No 300
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.70 E-value=0.0075 Score=58.25 Aligned_cols=107 Identities=16% Similarity=0.101 Sum_probs=51.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccC---CChHHHHHHHHHHHcc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAED---HNIDQRADMISEELKD 258 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 258 (913)
.++.|+|+.|+||||++..+..+....+ . .++.+....+ ...-...+...++..... .+..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~~----~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPEE----MRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEEESSGGG----GGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeeccc--cccCcccEEecCCCceeeEEECCHHH----HHHHhcC
Confidence 4788999999999999977766653222 2 2333332211 000000111111111110 11111 2222234
Q ss_pred CCeEEEEeCCCCc-cccccccCCCCCCCceEEEEeechh
Q 045843 259 KSYVLFLDEVSTE-INLRDIGIHDEHKNGKVVFACIFRN 296 (913)
Q Consensus 259 kr~LlVlDdv~~~-~~~~~~~~~~~~~~s~iivTTR~~~ 296 (913)
+.-+|++|++... .+|..........|..|++|.+..+
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 4569999999875 3454432211112788999888544
No 301
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.69 E-value=0.043 Score=53.67 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998766
No 302
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.69 E-value=0.22 Score=51.98 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=49.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHH--HHHHHHHHHccCCc----cCCChHHH-HHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIR--DIQEVLLKRLDLRA----EDHNIDQR-ADMI 252 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~i~~~i~~~l~~~~----~~~~~~~~-~~~l 252 (913)
...+|+|+|++|+||||++..++......+ ..+.++.. +.+... +-+....+..+... ...+.... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 346999999999999999999987765221 22334433 333322 22234444444322 11222222 2345
Q ss_pred HHHHccCCeEEEEeCCCC
Q 045843 253 SEELKDKSYVLFLDEVST 270 (913)
Q Consensus 253 ~~~l~~kr~LlVlDdv~~ 270 (913)
...+..+.-++|+|..-.
T Consensus 180 ~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 180 AHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCc
Confidence 555555666889997643
No 303
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.64 E-value=0.044 Score=58.47 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=81.4
Q ss_pred cccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc
Q 045843 161 EVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA 240 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 240 (913)
.++|++..++.+...+... ..+.++|++|+|||+||+.+.+... ..| ..+..+......++..... ....
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~--~~~---~~i~~~~~~~~~~l~g~~~--~~~~- 97 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD--LDF---HRIQFTPDLLPSDLIGTMI--YNQH- 97 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT--CCE---EEEECCTTCCHHHHHEEEE--EETT-
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC--CCe---EEEecCCCCChhhcCCcee--ecCC-
Confidence 4579999998888877654 3688999999999999999998764 222 2233433333333221110 0000
Q ss_pred cCCChHHHHHHHHHHHccC---CeEEEEeCCCCccc--cccc-------c--CC----CCCCCceEEEEeechh------
Q 045843 241 EDHNIDQRADMISEELKDK---SYVLFLDEVSTEIN--LRDI-------G--IH----DEHKNGKVVFACIFRN------ 296 (913)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~k---r~LlVlDdv~~~~~--~~~~-------~--~~----~~~~~s~iivTTR~~~------ 296 (913)
.+ .. .++.. ..++++||+..... ...+ . .. .......||.|+....
T Consensus 98 ~~-~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~ 167 (331)
T 2r44_A 98 KG-NF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYP 167 (331)
T ss_dssp TT-EE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCC
T ss_pred CC-ce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCccc
Confidence 00 00 00111 25899999876421 1111 0 00 1223455555555222
Q ss_pred hhhc----CCceEEcccCChHHHHHHHHHHhCC
Q 045843 297 ICGQ----IDEEVNVQRLSGKDAQKLFWETVGV 325 (913)
Q Consensus 297 v~~~----~~~~~~l~~L~~~~~~~Lf~~~~~~ 325 (913)
+... ....+.++..+.++-.+++.+.+..
T Consensus 168 l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 168 LPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1111 3336889999999999998887654
No 304
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.63 E-value=0.047 Score=53.42 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=25.0
Q ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 178 NVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 178 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...-.+|+|+|+.|+||||+++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34557999999999999999999988764
No 305
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.63 E-value=0.031 Score=54.11 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
-.+++|+|+.|+||||+++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999865
No 306
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.58 E-value=0.069 Score=55.47 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=24.0
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
....+|+|+|+.|+||||||+.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456999999999999999999887665
No 307
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.56 E-value=0.2 Score=55.22 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=60.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC-CHHHHHHHHHHHccCC-------c-------cCCC--
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLR-------A-------EDHN-- 244 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~-------~-------~~~~-- 244 (913)
..++|+|..|+|||+|+..+.+... +.+-+..+++-+.+.. .+.++.+++.+.=... . .+..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~ 244 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHH
Confidence 4789999999999999999988753 1345778898888865 4677777777642221 1 0011
Q ss_pred ----hHHHHHHHHHHHc---cCCeEEEEeCCCC
Q 045843 245 ----IDQRADMISEELK---DKSYVLFLDEVST 270 (913)
Q Consensus 245 ----~~~~~~~l~~~l~---~kr~LlVlDdv~~ 270 (913)
.....-.+.++++ ++..||++||+..
T Consensus 245 ~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1222344566664 5899999999865
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.55 E-value=0.037 Score=54.21 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|+|.|+.|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988763
No 309
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.54 E-value=0.04 Score=52.73 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHD 203 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~ 203 (913)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999987
No 310
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.50 E-value=0.043 Score=52.47 Aligned_cols=24 Identities=46% Similarity=0.879 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.++|+|+.|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998765
No 311
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.44 E-value=0.07 Score=57.74 Aligned_cols=45 Identities=29% Similarity=0.451 Sum_probs=36.0
Q ss_pred ccchHHHHHHHHHHHh-------------c--CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 162 VPSLNKHLKMLQECLR-------------N--VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
++|.+..++.+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5798888888887772 1 1345789999999999999999998764
No 312
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.38 E-value=0.044 Score=53.69 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 313
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.38 E-value=0.3 Score=49.15 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=31.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEV 231 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~ 231 (913)
-.++.|.|++|+||||+|.+++.... ..-..++|+.... ...++.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS--CHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC--CHHHHHHH
Confidence 35899999999999999988876543 2224567776544 34444433
No 314
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.27 E-value=0.052 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.775 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998775
No 315
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.26 E-value=0.047 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
++|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 316
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.20 E-value=0.044 Score=52.92 Aligned_cols=25 Identities=36% Similarity=0.672 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999987654
No 317
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.19 E-value=0.051 Score=52.06 Aligned_cols=26 Identities=42% Similarity=0.626 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.++|.|.|++|+||||+|+.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999997764
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.19 E-value=0.054 Score=52.36 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=22.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988664
No 319
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.14 E-value=0.052 Score=51.68 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 320
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.13 E-value=0.059 Score=54.67 Aligned_cols=27 Identities=37% Similarity=0.688 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|+|+.|+||||+++.+.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356999999999999999999997664
No 321
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.13 E-value=0.051 Score=55.38 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+|.|.|+.|+||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 322
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.09 E-value=0.048 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 323
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.06 E-value=0.041 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLH 202 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~ 202 (913)
-.+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3589999999999999999643
No 324
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.04 E-value=0.32 Score=53.39 Aligned_cols=98 Identities=15% Similarity=0.273 Sum_probs=62.4
Q ss_pred HHHHHhc-CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCC-CHHHHHHHHHHHccCC------c---
Q 045843 172 LQECLRN-VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLR------A--- 240 (913)
Q Consensus 172 l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~------~--- 240 (913)
.++.+.. .+-..++|+|..|+|||+|++.+.+... +.+-+..+++-+.+.. .+.++.+++.+.=... .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 4455522 2234789999999999999999988753 1344667888888864 4667777777652221 1
Q ss_pred --c--CCC-h-----HHHHHHHHHHH---ccCCeEEEEeCCCC
Q 045843 241 --E--DHN-I-----DQRADMISEEL---KDKSYVLFLDEVST 270 (913)
Q Consensus 241 --~--~~~-~-----~~~~~~l~~~l---~~kr~LlVlDdv~~ 270 (913)
. +.. . ....-.+.+++ +++..||++||+..
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0 111 1 11223344555 36899999999865
No 325
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.02 E-value=0.068 Score=52.72 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+.++|.|.|++|+||||.|+.+.....
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 567999999999999999999998875
No 326
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.00 E-value=0.063 Score=52.87 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.-.+|+|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999987653
No 327
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.99 E-value=0.053 Score=52.41 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHD 203 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~ 203 (913)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 328
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.97 E-value=0.044 Score=52.64 Aligned_cols=25 Identities=36% Similarity=0.672 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+.|.|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588999999999999999987653
No 329
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.96 E-value=0.094 Score=57.04 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998764
No 330
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.95 E-value=0.058 Score=52.25 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999987763
No 331
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.91 E-value=0.058 Score=52.94 Aligned_cols=26 Identities=27% Similarity=0.594 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
...+|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998765
No 332
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.91 E-value=0.053 Score=52.11 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
++|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999988764
No 333
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.89 E-value=0.052 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.690 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 334
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.88 E-value=0.074 Score=59.70 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=35.8
Q ss_pred ccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 162 VPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 162 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
++|++..++.+...+... ..|.++|++|+|||+||+.+.+...
T Consensus 24 ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 569999998888777554 3788999999999999999988664
No 335
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.87 E-value=0.062 Score=53.65 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987653
No 336
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.86 E-value=0.63 Score=48.37 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=47.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-CCHHHHHHHHHHHccCCc----cCCChHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE-GNIRDIQEVLLKRLDLRA----EDHNIDQRADMISEE 255 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~~l~~~~----~~~~~~~~~~~l~~~ 255 (913)
..+++++|.+|+||||++..+....... -..+.++..... ....+.++...+..+... ...+.........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998776522 223444443322 222333444445444432 112333343333444
Q ss_pred Hc-cCCeEEEEeCCC
Q 045843 256 LK-DKSYVLFLDEVS 269 (913)
Q Consensus 256 l~-~kr~LlVlDdv~ 269 (913)
++ .+.=++|+|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 44 333378888754
No 337
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.84 E-value=0.068 Score=50.48 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998765
No 338
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.82 E-value=0.072 Score=51.22 Aligned_cols=25 Identities=36% Similarity=0.516 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
...+|+|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 339
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.80 E-value=0.06 Score=52.80 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998755
No 340
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.72 E-value=0.068 Score=51.47 Aligned_cols=27 Identities=37% Similarity=0.487 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|.|.|++|+||||+++.+.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998765
No 341
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.64 E-value=0.074 Score=51.61 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|.|.|+.|+||||+|+.+.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987764
No 342
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.64 E-value=0.059 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHD 203 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~ 203 (913)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 343
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.61 E-value=0.85 Score=51.00 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|+|.+|+||||++..+.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999987665
No 344
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.60 E-value=0.072 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987654
No 345
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.58 E-value=0.092 Score=57.63 Aligned_cols=46 Identities=33% Similarity=0.455 Sum_probs=36.2
Q ss_pred cccchHHHHHHHHHHHhc--------------CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 161 EVPSLNKHLKMLQECLRN--------------VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 161 ~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+++|.+..++.+...+.. ...+.|.++|++|+||||+|+.++....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467888888887766522 1345789999999999999999998875
No 346
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.54 E-value=0.063 Score=52.94 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999987654
No 347
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.54 E-value=0.069 Score=50.61 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988764
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.52 E-value=0.077 Score=51.36 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.-++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 446899999999999999999987653
No 349
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.47 E-value=0.078 Score=50.96 Aligned_cols=25 Identities=36% Similarity=0.724 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..|++.|+.|+||||+|+.+.....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987654
No 350
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.47 E-value=0.071 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998765
No 351
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.45 E-value=0.081 Score=49.77 Aligned_cols=27 Identities=30% Similarity=0.213 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..++++|+|+.|+|||||+..+....+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 357999999999999999999988765
No 352
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.42 E-value=0.28 Score=63.42 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=58.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc------cCCChHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA------EDHNIDQRADMIS 253 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~------~~~~~~~~~~~l~ 253 (913)
.-++|-|+|++|+|||+||.++..... .+=..++|+.+...++... ++.++... .....++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 457999999999999999999987765 3334678888888777666 44555321 1133445555555
Q ss_pred HHHc-cCCeEEEEeCCC
Q 045843 254 EELK-DKSYVLFLDEVS 269 (913)
Q Consensus 254 ~~l~-~kr~LlVlDdv~ 269 (913)
...+ .+.-+||+|++.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 577899999985
No 353
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.36 E-value=0.088 Score=49.62 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988764
No 354
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.35 E-value=0.078 Score=49.46 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.-.+++++|+.|.|||||++.+..-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44599999999999999999998765
No 355
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.34 E-value=0.12 Score=53.58 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 356
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.33 E-value=0.071 Score=56.07 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=28.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeC
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVN 220 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (913)
++.+||+|.|-||+||||.+..+..-....+ ..+.-|.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecC
Confidence 4678999999999999999988876664222 234445544
No 357
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.32 E-value=0.17 Score=55.17 Aligned_cols=86 Identities=7% Similarity=0.115 Sum_probs=55.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCc----eEEEEEeCCCC-CHHHHHHHHHHHccCCc-------cCCC-hH---
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGESRQFD----FIFWVTVNSEG-NIRDIQEVLLKRLDLRA-------EDHN-ID--- 246 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~-~~--- 246 (913)
.++|+|..|+|||+|+.++.+.... +-+ ..+++-+.+.. .+.++.+++.+.=.... .+.. ..
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 5789999999999999999988763 223 66777777653 46677776655311110 1111 11
Q ss_pred --HHHHHHHHHHc---cCCeEEEEeCCCC
Q 045843 247 --QRADMISEELK---DKSYVLFLDEVST 270 (913)
Q Consensus 247 --~~~~~l~~~l~---~kr~LlVlDdv~~ 270 (913)
...-.+.++++ ++..||++||+..
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11234566664 6899999999865
No 358
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.31 E-value=0.075 Score=51.89 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
+..+|+|.|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999864
No 359
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.30 E-value=0.076 Score=51.65 Aligned_cols=26 Identities=46% Similarity=0.602 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|+|.|+.|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988764
No 360
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.25 E-value=0.17 Score=51.15 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|.|++|+||||+|+.+.+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 556899999999999999999987663
No 361
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.24 E-value=0.069 Score=52.41 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHD 203 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~ 203 (913)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 362
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.23 E-value=0.084 Score=51.96 Aligned_cols=26 Identities=31% Similarity=0.251 Sum_probs=23.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGE 207 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 207 (913)
.+|.|.|+.|+||||+|+.+......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999988763
No 363
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.22 E-value=0.098 Score=51.06 Aligned_cols=27 Identities=37% Similarity=0.716 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|.|.|+.|+||||+|+.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999988764
No 364
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.14 E-value=0.071 Score=52.90 Aligned_cols=25 Identities=36% Similarity=0.675 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.14 E-value=0.088 Score=53.58 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.-.+|+|+|+.|+||||+++.+.....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346999999999999999999997764
No 366
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.13 E-value=0.089 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.396 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 045843 183 RICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 367
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.08 E-value=0.14 Score=53.73 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|.|+.|+||||+++.+..-..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345999999999999999999987654
No 368
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.02 E-value=0.065 Score=51.35 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=19.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999987754
No 369
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.98 E-value=0.094 Score=53.67 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998864
No 370
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.98 E-value=0.092 Score=55.17 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|+|+.|+|||||++.+..-..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 446999999999999999999987664
No 371
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.98 E-value=0.46 Score=54.65 Aligned_cols=81 Identities=14% Similarity=-0.002 Sum_probs=46.3
Q ss_pred HHHHHHHHccCCcc------C-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc------ccCCCCCCCceEEEEeec
Q 045843 228 IQEVLLKRLDLRAE------D-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD------IGIHDEHKNGKVVFACIF 294 (913)
Q Consensus 228 i~~~i~~~l~~~~~------~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~------~~~~~~~~~s~iivTTR~ 294 (913)
...++++.++.... . +.-+...-.+...|-.++-+|+||+-....+-.. +...-...|..||++|.+
T Consensus 201 ~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 280 (608)
T 3j16_B 201 DVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280 (608)
T ss_dssp HHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSC
T ss_pred HHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 34556666665431 1 2223334456667777888999999887654321 100112336678888888
Q ss_pred hhhhhc-CCceEEcc
Q 045843 295 RNICGQ-IDEEVNVQ 308 (913)
Q Consensus 295 ~~v~~~-~~~~~~l~ 308 (913)
...+.. ++.++.+.
T Consensus 281 l~~~~~~~drv~vl~ 295 (608)
T 3j16_B 281 LSVLDYLSDFVCIIY 295 (608)
T ss_dssp HHHHHHHCSEEEEEE
T ss_pred HHHHHHhCCEEEEEe
Confidence 766655 55555553
No 372
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.93 E-value=0.079 Score=52.06 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
..+|+|+|+.|+||||+|+.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998643
No 373
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.83 E-value=0.24 Score=57.01 Aligned_cols=127 Identities=16% Similarity=0.159 Sum_probs=72.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCC--C-c-eEEEEEeC--CCC--CHH--------------HHHHHHHHHccCC
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQ--F-D-FIFWVTVN--SEG--NIR--------------DIQEVLLKRLDLR 239 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~--F-~-~~~wv~vs--~~~--~~~--------------~i~~~i~~~l~~~ 239 (913)
.+++|+|+.|+|||||++.+..-...... . . .+.++.-. ..+ .+. .....+++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 47999999999999999999865432111 0 0 12222110 001 111 2233445555433
Q ss_pred c------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCccccccc---c--CC--CCCCCceEEEEeechhhhhc-CCce
Q 045843 240 A------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDI---G--IH--DEHKNGKVVFACIFRNICGQ-IDEE 304 (913)
Q Consensus 240 ~------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~---~--~~--~~~~~s~iivTTR~~~v~~~-~~~~ 304 (913)
. .. +.-+...-.+...|..++-+|+||+-....|.... . +. ....|..||++|.+...+.. ++.+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrv 538 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKV 538 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEE
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 2 11 22344445667788889999999998876553211 0 00 12346778888888776655 6666
Q ss_pred EEcc
Q 045843 305 VNVQ 308 (913)
Q Consensus 305 ~~l~ 308 (913)
+.+.
T Consensus 539 ivl~ 542 (608)
T 3j16_B 539 IVFE 542 (608)
T ss_dssp EECE
T ss_pred EEEe
Confidence 6554
No 374
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.83 E-value=0.089 Score=53.31 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998754
No 375
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.83 E-value=0.66 Score=48.22 Aligned_cols=86 Identities=12% Similarity=0.073 Sum_probs=47.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHH--HHHHHHHHccCCcc----CCChHHHHH-HH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRD--IQEVLLKRLDLRAE----DHNIDQRAD-MI 252 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~--i~~~i~~~l~~~~~----~~~~~~~~~-~l 252 (913)
...+++++|.+|+||||++..++......+ ..+.++.. +...... -+....+..+...- ..+..++.. .+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~-d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecC-CcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 346899999999999999999987765221 22333333 2222222 23334444443321 123333332 33
Q ss_pred HHHHccCCeEEEEeCC
Q 045843 253 SEELKDKSYVLFLDEV 268 (913)
Q Consensus 253 ~~~l~~kr~LlVlDdv 268 (913)
......+.=+||+|..
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3333345568889986
No 376
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.81 E-value=0.15 Score=57.86 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=69.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccC-C--Cc--eEEEEEeC--C--CCCHHHHHH---------------HHHHHcc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESR-Q--FD--FIFWVTVN--S--EGNIRDIQE---------------VLLKRLD 237 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~--F~--~~~wv~vs--~--~~~~~~i~~---------------~i~~~l~ 237 (913)
.+++|+|+.|+|||||++.++.-..... . ++ .+.++.-. . ...+.+.+. .+++.++
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~ 374 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN 374 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence 5899999999999999999986543211 0 11 12222110 0 112222221 1222222
Q ss_pred CCc------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccc-------ccCCCCCCCceEEEEeechhhhhc-CC
Q 045843 238 LRA------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRD-------IGIHDEHKNGKVVFACIFRNICGQ-ID 302 (913)
Q Consensus 238 ~~~------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~-------~~~~~~~~~s~iivTTR~~~v~~~-~~ 302 (913)
... .. +.-+...-.+...|-.++-+|+||+-....|... +.--....|..||++|.+...+.. ++
T Consensus 375 l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aD 454 (538)
T 3ozx_A 375 LHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIAD 454 (538)
T ss_dssp GGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred CHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 211 01 2223344456777888899999999888655321 110022346778888888776665 66
Q ss_pred ceEEcc
Q 045843 303 EEVNVQ 308 (913)
Q Consensus 303 ~~~~l~ 308 (913)
.++.+.
T Consensus 455 ri~vl~ 460 (538)
T 3ozx_A 455 RIIVFK 460 (538)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666554
No 377
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.80 E-value=0.09 Score=50.81 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987754
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.73 E-value=0.1 Score=50.46 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
...+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45699999999999999999998764
No 379
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.72 E-value=0.12 Score=51.37 Aligned_cols=26 Identities=38% Similarity=0.704 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999988764
No 380
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.68 E-value=0.11 Score=51.50 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987764
No 381
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.65 E-value=0.1 Score=51.68 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999987654
No 382
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.62 E-value=0.42 Score=46.33 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|+|=|..|+||||.++.+++..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478889999999999999998886
No 383
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.61 E-value=0.096 Score=50.54 Aligned_cols=25 Identities=36% Similarity=0.814 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+++|+|+.|+|||||++.+.....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999987654
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.60 E-value=0.24 Score=47.95 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.58 E-value=0.11 Score=54.28 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+++|+|++|+||||+++.+..-..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 356999999999999999999987665
No 386
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.57 E-value=0.57 Score=49.47 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=37.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRL 236 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l 236 (913)
-.++.|.|.+|+||||+|..++..... +=..++|++. ..+...+...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 358999999999999999999877653 2235666554 446677766665543
No 387
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.53 E-value=0.18 Score=48.69 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=28.6
Q ss_pred HHHHHHHHhc-CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 169 LKMLQECLRN-VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 169 ~~~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+..+..++.+ ++...+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4555555543 2234799999999999999999988764
No 388
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.53 E-value=0.14 Score=52.16 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|.++|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999987653
No 389
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.53 E-value=0.13 Score=59.88 Aligned_cols=48 Identities=15% Similarity=0.404 Sum_probs=39.3
Q ss_pred CccccccchHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 157 KKMEEVPSLNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 157 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+..++|.+..++.+...+... ..+.|+|++|+||||||+.+.....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34557889999888887777554 4889999999999999999998654
No 390
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.52 E-value=0.12 Score=50.54 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
+|.|.|++|+||+|.|+.+..+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999998775
No 391
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.45 E-value=0.11 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998765
No 392
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.39 E-value=0.1 Score=52.03 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...|.|.|+.|+||||+|+.+.....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999987653
No 393
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.39 E-value=0.11 Score=50.97 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|+|.|+.|+||||+|+.+.....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998765
No 394
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.35 E-value=0.11 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|+|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
No 395
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.33 E-value=0.12 Score=52.08 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=22.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.. .+++|+|+.|+|||||.+.+..-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 799999999999999999998543
No 396
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.29 E-value=0.12 Score=50.85 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|+|.|+.|+||||+|+.+.....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998765
No 397
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.17 E-value=0.13 Score=52.26 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|.|+.|+||||+|+.+.....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999988654
No 398
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.13 E-value=0.72 Score=45.58 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...++|.|++|+||||+|+.+.....
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988764
No 399
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.13 E-value=0.066 Score=52.85 Aligned_cols=25 Identities=40% Similarity=0.516 Sum_probs=22.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+|+|.|+.|+||||+|+.+.....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999987764
No 400
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.13 E-value=0.31 Score=51.76 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=52.7
Q ss_pred HHHHHHhc-CCCcEEEEECCCCCcHHHHHHHHHHHhccc-CCCceEEEEEeCCCCC-HHHHHHHHHHHccCCc-cCCChH
Q 045843 171 MLQECLRN-VGTKRICIWGPPGVGKTTIMENLHDAIGES-RQFDFIFWVTVNSEGN-IRDIQEVLLKRLDLRA-EDHNID 246 (913)
Q Consensus 171 ~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~-~~~~~~ 246 (913)
++++.+.. ..-..++|+|..|+|||+|++++.+..... ..+.+ +++-+.+... +.++.+.+...+-... +.....
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~ 242 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERPEEVTDIRESTNAIVIAAPFDMPPDK 242 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCcchHHHHHHHhCCeEEEECCCCCHHH
Confidence 45566632 223478999999999999999998865421 23333 4666766422 1111111110000000 111111
Q ss_pred -----HHHHHHHHHH--ccCCeEEEEeCCCC
Q 045843 247 -----QRADMISEEL--KDKSYVLFLDEVST 270 (913)
Q Consensus 247 -----~~~~~l~~~l--~~kr~LlVlDdv~~ 270 (913)
...-.+.+++ +++..||++||+..
T Consensus 243 r~~~a~~altiAEyfrd~G~dVLil~DslTR 273 (427)
T 3l0o_A 243 QVKVAELTLEMAKRLVEFNYDVVILLDSLTR 273 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecccchH
Confidence 1112233444 58999999999865
No 401
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.05 E-value=0.28 Score=52.01 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=58.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHccCCe
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELKDKSY 261 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~kr~ 261 (913)
.+++|+|+.|.|||||++.+..-... -...+.+.-......... -+.++.- .+ ........+...|..++-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~~~~e~~~~~~----~~~i~~~-~g-gg~~~r~~la~aL~~~p~ 242 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIEDTEEIVFKHH----KNYTQLF-FG-GNITSADCLKSCLRMRPD 242 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEESSCCCCCSSC----SSEEEEE-CB-TTBCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEECCeeccccccc----hhEEEEE-eC-CChhHHHHHHHHhhhCCC
Confidence 48999999999999999999866532 234555442221110000 0000000 00 123344566777888899
Q ss_pred EEEEeCCCCccccccccCCCCCCCceEEEEeechh
Q 045843 262 VLFLDEVSTEINLRDIGIHDEHKNGKVVFACIFRN 296 (913)
Q Consensus 262 LlVlDdv~~~~~~~~~~~~~~~~~s~iivTTR~~~ 296 (913)
+|++|++...+.++.+..... .+.-+|+||....
T Consensus 243 ilildE~~~~e~~~~l~~~~~-g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 243 RIILGELRSSEAYDFYNVLCS-GHKGTLTTLHAGS 276 (330)
T ss_dssp EEEECCCCSTHHHHHHHHHHT-TCCCEEEEEECSS
T ss_pred EEEEcCCChHHHHHHHHHHhc-CCCEEEEEEcccH
Confidence 999999998554443321111 1223677776544
No 402
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.04 E-value=0.13 Score=50.26 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
..+|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998765
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.02 E-value=0.12 Score=52.27 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
-.+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998764
No 404
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.99 E-value=0.77 Score=55.43 Aligned_cols=122 Identities=14% Similarity=0.182 Sum_probs=71.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCc-----eEEEEEeCCCC-------CH-----------HHHHHHHHHHccC
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFD-----FIFWVTVNSEG-------NI-----------RDIQEVLLKRLDL 238 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~-----~~~wv~vs~~~-------~~-----------~~i~~~i~~~l~~ 238 (913)
.+++|+|+.|+|||||.+.+..- .+. .++ ... .+.+.. ++ .+....+++.++.
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~--~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTV--YVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEE--ETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEE--EEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 58999999999999999999842 111 111 112 222211 11 2234456666666
Q ss_pred Cc-------cC-CChHHHHHHHHHHHccCCeEEEEeCCCCcccccccc----CCCCCCCceEEEEeechhhhhc-CCceE
Q 045843 239 RA-------ED-HNIDQRADMISEELKDKSYVLFLDEVSTEINLRDIG----IHDEHKNGKVVFACIFRNICGQ-IDEEV 305 (913)
Q Consensus 239 ~~-------~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~----~~~~~~~s~iivTTR~~~v~~~-~~~~~ 305 (913)
.. .. +.-+...-.|...+-.++-+|+||+-.+..|..... .-.. .|..||++|.+...... ++.++
T Consensus 538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii 616 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYII 616 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEE
T ss_pred ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEE
Confidence 31 11 233444445666777788999999988865532210 0012 47788888888766554 55555
Q ss_pred Ecc
Q 045843 306 NVQ 308 (913)
Q Consensus 306 ~l~ 308 (913)
.++
T Consensus 617 ~L~ 619 (986)
T 2iw3_A 617 NYE 619 (986)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 405
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.94 E-value=0.077 Score=50.22 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+++|+|..|+|||||++.+..-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999987665
No 406
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.90 E-value=0.12 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHD 203 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~ 203 (913)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999999999873
No 407
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.80 E-value=0.12 Score=51.88 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999987543
No 408
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.77 E-value=0.14 Score=48.88 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
-.+|+|.|+.|+||||+++.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999988653
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.74 E-value=0.23 Score=48.79 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.9
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
....+|.|.|+.|+||||+|+.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999987654
No 410
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.74 E-value=0.2 Score=54.55 Aligned_cols=88 Identities=13% Similarity=0.219 Sum_probs=54.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhccc--------CCCc-eEEEEEeCCCC-CHHHHHHHHHHHccCCc--------cCCC
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIGES--------RQFD-FIFWVTVNSEG-NIRDIQEVLLKRLDLRA--------EDHN 244 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~~--------~~~~ 244 (913)
.++|+|..|+|||+|+.++.+..... ++=+ ..+++-+.+.. .+.++.+++.+.=.... +...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 57899999999999999999887642 1111 56777777653 45666666554310110 1111
Q ss_pred hH-----HHHHHHHHHHc---cCCeEEEEeCCCC
Q 045843 245 ID-----QRADMISEELK---DKSYVLFLDEVST 270 (913)
Q Consensus 245 ~~-----~~~~~l~~~l~---~kr~LlVlDdv~~ 270 (913)
.. ...-.+.++++ ++..||++||+..
T Consensus 229 ~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11 12234566664 6899999999864
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.73 E-value=0.15 Score=50.80 Aligned_cols=26 Identities=31% Similarity=0.642 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|+|.|+.|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987764
No 412
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.71 E-value=0.18 Score=47.88 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..++++|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 357999999999999999999987654
No 413
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.69 E-value=0.091 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=16.0
Q ss_pred cEEEEECCCCCcHHHHHHHHH-HHh
Q 045843 182 KRICIWGPPGVGKTTIMENLH-DAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~-~~~ 205 (913)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 654
No 414
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.54 E-value=0.73 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999987543
No 415
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.52 E-value=0.15 Score=53.82 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.+|+|.|+.|+||||||+.+.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999997754
No 416
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.52 E-value=0.16 Score=49.62 Aligned_cols=25 Identities=28% Similarity=0.540 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
++|+|.|+.|+||||+|+.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999987654
No 417
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.47 E-value=0.11 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987543
No 418
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.45 E-value=0.25 Score=51.81 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|+|+.|+|||||++.+.....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 446999999999999999999987653
No 419
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.43 E-value=0.17 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHD 203 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~ 203 (913)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 420
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.43 E-value=0.16 Score=53.08 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+++|+|+.|+||||+++.++....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35999999999999999999987664
No 421
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.42 E-value=0.11 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999865
No 422
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.29 E-value=0.17 Score=50.24 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987763
No 423
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.20 E-value=0.21 Score=50.08 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...|.|.|+.|+||||+|+.+.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 424
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.19 E-value=0.15 Score=52.51 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHccCCeEEEEeCCCCcccccc-------ccCCCCCCCceEEEEeechhhhhc-CCceEEc
Q 045843 246 DQRADMISEELKDKSYVLFLDEVSTEINLRD-------IGIHDEHKNGKVVFACIFRNICGQ-IDEEVNV 307 (913)
Q Consensus 246 ~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~-------~~~~~~~~~s~iivTTR~~~v~~~-~~~~~~l 307 (913)
+...-.+...|-.++-+|+||+.....|... +.--....|..||++|.+...+.. ++.++.+
T Consensus 148 qkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 148 QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 3334456667777888999999877544321 100011236778888877665544 5555544
No 425
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.19 E-value=0.13 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999987543
No 426
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.16 E-value=0.13 Score=51.57 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|+|||||++.+..-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997544
No 427
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.12 E-value=0.31 Score=52.29 Aligned_cols=38 Identities=34% Similarity=0.372 Sum_probs=29.0
Q ss_pred HHHHHHHHh--cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 169 LKMLQECLR--NVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 169 ~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..++.+.+. ..+..+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444455543 35677999999999999999999887654
No 428
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.12 E-value=0.16 Score=50.18 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..|.|.|++|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998764
No 429
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.10 E-value=0.16 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 430
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.04 E-value=0.17 Score=50.01 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988663
No 431
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.99 E-value=0.13 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.675 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.+++|+|+.|+|||||.+.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999997543
No 432
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.96 E-value=0.16 Score=51.98 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999874
No 433
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.94 E-value=0.17 Score=52.88 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
++|.|+|+.|+||||||+.+.....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999997653
No 434
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.90 E-value=0.14 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997543
No 435
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.86 E-value=0.14 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34589999999999999999987543
No 436
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.80 E-value=0.14 Score=52.08 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.+++|+|+.|+|||||.+.+..-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999987543
No 437
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.69 E-value=0.17 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLH 202 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~ 202 (913)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 438
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.69 E-value=0.29 Score=53.69 Aligned_cols=89 Identities=11% Similarity=0.150 Sum_probs=56.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCC--CceEEEEEeCCCC-CHHHHHHHHHHHccCCc-------cCCC-h-----
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQ--FDFIFWVTVNSEG-NIRDIQEVLLKRLDLRA-------EDHN-I----- 245 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~-~----- 245 (913)
..++|+|..|+|||+|+.+++++..+.+. =+..+++-+.+.. .+.++.+++...=.... .+.. .
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 36788899999999999999988764221 1456777777754 46677777765421111 1111 1
Q ss_pred HHHHHHHHHHHc---cCCeEEEEeCCCC
Q 045843 246 DQRADMISEELK---DKSYVLFLDEVST 270 (913)
Q Consensus 246 ~~~~~~l~~~l~---~kr~LlVlDdv~~ 270 (913)
....-.+.++++ ++..||++||+..
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 112233455554 6999999999754
No 439
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.67 E-value=0.17 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.|+|+|..|+|||||.+.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999998754
No 440
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.67 E-value=0.2 Score=51.99 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998654
No 441
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.64 E-value=0.34 Score=53.63 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=29.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN 224 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (913)
..+++|+|..|+|||||++.+....... ...+++.....+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 4599999999999999999998766421 3345554444444
No 442
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.60 E-value=0.15 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.+++|+|+.|+|||||++.+..-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987543
No 443
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.50 E-value=0.16 Score=51.24 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
-.+++|+|+.|+|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998754
No 444
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.41 E-value=0.39 Score=50.53 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|+|.+|+||||++..++....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999987665
No 445
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.39 E-value=0.18 Score=52.99 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3589999999999999999998654
No 446
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.39 E-value=0.33 Score=58.68 Aligned_cols=111 Identities=15% Similarity=0.105 Sum_probs=57.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCce--EEEEEeCCCCCHHHHHHHHHHHccCCc----cCCChHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG--ESRQFDF--IFWVTVNSEGNIRDIQEVLLKRLDLRA----EDHNIDQRADMI 252 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~--~~~~F~~--~~wv~vs~~~~~~~i~~~i~~~l~~~~----~~~~~~~~~~~l 252 (913)
-.+++|.|+.|.||||+.+.+.--.- ..+.|-. ..-+.+-. .|+..++... ...........+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d---------~i~~~ig~~d~l~~~lStf~~e~~~~ 732 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVD---------CILARVGAGDSQLKGVSTFMAEMLET 732 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCS---------EEEEECC---------CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHH---------HHHHhcCchhhHHHhHhhhHHHHHHH
Confidence 46999999999999999999832110 0122211 11111100 0111111110 001222223333
Q ss_pred HHHH--ccCCeEEEEeCCCCcccc-cc--c-----cCCCCCCCceEEEEeechhhhhc
Q 045843 253 SEEL--KDKSYVLFLDEVSTEINL-RD--I-----GIHDEHKNGKVVFACIFRNICGQ 300 (913)
Q Consensus 253 ~~~l--~~kr~LlVlDdv~~~~~~-~~--~-----~~~~~~~~s~iivTTR~~~v~~~ 300 (913)
...+ ..++-||+||+.-...+- +. + ..-....|+.||++|.+..++..
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~l 790 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTAL 790 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGG
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHH
Confidence 4444 467899999999775432 11 1 10022358999999999776554
No 447
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.36 E-value=0.21 Score=53.27 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+++|+|+.|+||||+++.++....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 35999999999999999999987764
No 448
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.29 E-value=0.17 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.+++|+|+.|+|||||.+.+..-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999987654
No 449
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.24 E-value=0.17 Score=51.99 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999997543
No 450
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.23 E-value=0.26 Score=50.23 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999987665
No 451
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.23 E-value=0.22 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 452
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.22 E-value=0.17 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999997543
No 453
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.19 E-value=0.54 Score=51.84 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=53.2
Q ss_pred cEEEEECCCCCcHHHHH-HHHHHHhcccCCCc-eEEEEEeCCCC-CHHHHHHHHHHHccCCc-------cCCC-hHH---
Q 045843 182 KRICIWGPPGVGKTTIM-ENLHDAIGESRQFD-FIFWVTVNSEG-NIRDIQEVLLKRLDLRA-------EDHN-IDQ--- 247 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~~-------~~~~-~~~--- 247 (913)
..++|+|..|+|||+|| ..+.+.. +-+ ..+++-+.+.. .+.++.+.+.+.=.... .+.. ...
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46899999999999995 5677654 234 35777888764 46666777765322211 1111 111
Q ss_pred --HHHHHHHHH--ccCCeEEEEeCCCC
Q 045843 248 --RADMISEEL--KDKSYVLFLDEVST 270 (913)
Q Consensus 248 --~~~~l~~~l--~~kr~LlVlDdv~~ 270 (913)
..-.+.+++ +++..||++||+..
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 122345555 47999999999764
No 454
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.19 E-value=0.21 Score=51.92 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=23.2
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+.-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344699999999999999999998665
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.14 E-value=0.26 Score=51.03 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..++|.|.|+.|+||||||..++....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 346899999999999999999987653
No 456
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.12 E-value=0.18 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.+++|+|+.|+|||||.+.+..-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999997544
No 457
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.03 E-value=0.18 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
-.+++|+|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999998754
No 458
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.96 E-value=0.86 Score=58.28 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccC------CChHHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAED------HNIDQRADMISEE 255 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~~~~l~~~ 255 (913)
+++-|.|++|+||||||.++..... ..=..++|++....++... ++.++...+. .+.++....+...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred H-ccCCeEEEEeCC
Q 045843 256 L-KDKSYVLFLDEV 268 (913)
Q Consensus 256 l-~~kr~LlVlDdv 268 (913)
. +.+.-+||+|-+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 459
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.85 E-value=0.25 Score=45.66 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+.|.++|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999988654
No 460
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.85 E-value=0.39 Score=47.84 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=24.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGE 207 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 207 (913)
.-..|+|.|+.|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3458999999999999999999998863
No 461
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.84 E-value=0.23 Score=50.59 Aligned_cols=112 Identities=16% Similarity=0.191 Sum_probs=58.4
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC-CCCHHHHHHHHHHHccCCccCCChHHHHHHHHHHHc
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS-EGNIRDIQEVLLKRLDLRAEDHNIDQRADMISEELK 257 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 257 (913)
..-.+++|+|+.|+||||+++.+..-... .+...+++.-.. .+-.... ..+ +....-+.+.......+...+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~--~~~G~I~~~g~~i~~~~~~~-~~~---v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPIEYVFKHK-KSI---VNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH--HCCCEEEEEESSCCSCCCCS-SSE---EEEEEBTTTBSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC--CCCCEEEEcCCcceeecCCc-cee---eeHHHhCCCHHHHHHHHHHHHh
Confidence 34469999999999999999998865431 112333332111 0000000 000 0000000011233556777777
Q ss_pred cCCeEEEEeCCCCccccccccCCCCCCCceEEEEeechhh
Q 045843 258 DKSYVLFLDEVSTEINLRDIGIHDEHKNGKVVFACIFRNI 297 (913)
Q Consensus 258 ~kr~LlVlDdv~~~~~~~~~~~~~~~~~s~iivTTR~~~v 297 (913)
.++=+|++|+..+......... ....|.-|++||....+
T Consensus 97 ~~p~illlDEp~D~~~~~~~l~-~~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 97 EDPDVIFVGEMRDLETVETALR-AAETGHLVFGTLHTNTA 135 (261)
T ss_dssp HCCSEEEESCCCSHHHHHHHHH-HHHTTCEEEEEECCSSH
T ss_pred hCCCEEEeCCCCCHHHHHHHHH-HHccCCEEEEEeCcchH
Confidence 7888999999975433222111 12346678888876553
No 462
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.81 E-value=0.24 Score=46.42 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999754
No 463
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.81 E-value=0.96 Score=58.65 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=59.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCc------cCCChHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRA------EDHNIDQRADMIS 253 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~------~~~~~~~~~~~l~ 253 (913)
.-.++.|.|++|+||||||.++..... ..-..++|+.....++... ++.++... +..+.++....++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 346999999999999999999988775 2234678888777776542 55565532 1245566666666
Q ss_pred HHHc-cCCeEEEEeCCCCc
Q 045843 254 EELK-DKSYVLFLDEVSTE 271 (913)
Q Consensus 254 ~~l~-~kr~LlVlDdv~~~ 271 (913)
...+ .+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 5543 56679999998653
No 464
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.54 E-value=0.45 Score=49.87 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=29.2
Q ss_pred hcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCC
Q 045843 177 RNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNS 221 (913)
Q Consensus 177 ~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 221 (913)
.....++|+|+|-||+||||+|..+..-.... =..++-|....
T Consensus 37 ~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~ 79 (307)
T 3end_A 37 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP 79 (307)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred ccCCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 34466899999999999999999888766522 22355555543
No 465
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.47 E-value=0.95 Score=50.35 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=58.5
Q ss_pred HHHHHhc-CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC-HHHHHHHHHH----HccCC------
Q 045843 172 LQECLRN-VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN-IRDIQEVLLK----RLDLR------ 239 (913)
Q Consensus 172 l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~----~l~~~------ 239 (913)
+++.+.. .+-..++|+|..|+|||+|++++.+... -+..+++-+.+..+ +.++.+++-+ ..+..
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtv 292 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTV 292 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEE
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceE
Confidence 4455522 2234789999999999999999987633 35788888888654 5566666532 11100
Q ss_pred ----ccCCChH------HHHHHHHHHH--ccCCeEEEEeCCCCc
Q 045843 240 ----AEDHNID------QRADMISEEL--KDKSYVLFLDEVSTE 271 (913)
Q Consensus 240 ----~~~~~~~------~~~~~l~~~l--~~kr~LlVlDdv~~~ 271 (913)
..+.... ...-.+.+++ +++..||++|++...
T Consensus 293 vV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~ 336 (588)
T 3mfy_A 293 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRW 336 (588)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTC
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHH
Confidence 0011111 1122334555 478999999999753
No 466
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.46 E-value=0.58 Score=48.67 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=32.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 233 (913)
.-.+++|+|++|+|||||++.+......... ..++|+.... +...+.+.+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCcC--CHHHHHHHHH
Confidence 3359999999999999999999877653211 1355554432 3444444443
No 467
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.46 E-value=0.49 Score=52.18 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=52.9
Q ss_pred cEEEEECCCCCcHHHHH-HHHHHHhcccCCCc-eEEEEEeCCCC-CHHHHHHHHHHHccCCc--------cCCChH-H--
Q 045843 182 KRICIWGPPGVGKTTIM-ENLHDAIGESRQFD-FIFWVTVNSEG-NIRDIQEVLLKRLDLRA--------EDHNID-Q-- 247 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~i~~~i~~~l~~~~--------~~~~~~-~-- 247 (913)
..++|+|..|+|||+|| ..+.+.. .-+ ..+++-+.+.. .+.++.+.+.+.=.... ++.... .
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46899999999999996 5676654 244 35778888764 46666766665321111 111111 1
Q ss_pred --HHHHHHHHH--ccCCeEEEEeCCCC
Q 045843 248 --RADMISEEL--KDKSYVLFLDEVST 270 (913)
Q Consensus 248 --~~~~l~~~l--~~kr~LlVlDdv~~ 270 (913)
..-.+.+++ +++..||++||+..
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 122345555 47899999999864
No 468
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.41 E-value=1 Score=44.89 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHH
Q 045843 170 KMLQECLRNVGTKRICIWGPPGVGKTTIMENLH 202 (913)
Q Consensus 170 ~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~ 202 (913)
++++..+..+ ..+.|+|+.|+||||+...+.
T Consensus 67 ~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 67 SEILEAISQN--SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHHC--SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHH
Confidence 3444444333 589999999999998776554
No 469
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.37 E-value=0.32 Score=48.77 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999987654
No 470
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.35 E-value=0.23 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Q 045843 183 RICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.++|+|+.|+|||||.+.++.-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987654
No 471
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.20 E-value=0.24 Score=47.35 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 045843 183 RICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
.|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998763
No 472
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.19 E-value=1.9 Score=47.75 Aligned_cols=52 Identities=10% Similarity=-0.020 Sum_probs=36.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKR 235 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~ 235 (913)
-.++.|.|.+|+||||+|..++...... +=..++|++.. .+...+...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 3589999999999999999998776422 12346666554 3566666665543
No 473
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.16 E-value=0.26 Score=51.51 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999874
No 474
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.10 E-value=1.2 Score=48.95 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=52.7
Q ss_pred cEEEEECCCCCcHHHHH-HHHHHHhcccCCCceEEEEEeCCCC-CHHHHHHHHHHHccCCc--------cCCCh-H----
Q 045843 182 KRICIWGPPGVGKTTIM-ENLHDAIGESRQFDFIFWVTVNSEG-NIRDIQEVLLKRLDLRA--------EDHNI-D---- 246 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~--------~~~~~-~---- 246 (913)
..++|+|..|+|||+|| ..+.+.. ..-..++++-+.+.. .+.++.+.+.+.=.... ++... .
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~~---~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQR---DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAP 239 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTTS---SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhhc---cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHH
Confidence 36899999999999996 5666642 222246788888864 46677777655421111 11111 1
Q ss_pred HHHHHHHHHH--ccCCeEEEEeCCCC
Q 045843 247 QRADMISEEL--KDKSYVLFLDEVST 270 (913)
Q Consensus 247 ~~~~~l~~~l--~~kr~LlVlDdv~~ 270 (913)
...-.+.+++ +++..||++||+..
T Consensus 240 ~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 240 YAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEecChHH
Confidence 1122334554 47999999999864
No 475
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.08 E-value=0.17 Score=52.53 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=19.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
+..+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 476
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.04 E-value=0.23 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
-.+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998753
No 477
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.95 E-value=0.55 Score=50.51 Aligned_cols=27 Identities=26% Similarity=0.275 Sum_probs=23.5
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345699999999999999999999754
No 478
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.94 E-value=0.26 Score=54.16 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.6
Q ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 179 VGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 179 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
....+|.|+|++|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456799999999999999999998765
No 479
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.77 E-value=1.3 Score=49.14 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=34.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 233 (913)
-.++.|.|.+|+||||+|..++....... -..++|+.... +...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 35899999999999999999987765321 12466666443 4455555543
No 480
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.59 E-value=1.5 Score=48.43 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=33.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLL 233 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~ 233 (913)
-.++.|.|.+|+||||+|.+++.+.... =..++|++.-. +...+...++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHH
Confidence 3589999999999999999998776533 23566665443 3344444443
No 481
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.55 E-value=0.27 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.++.|+|++|+|||||+..+....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999988654
No 482
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.54 E-value=0.29 Score=46.75 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHHH
Q 045843 182 KRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
..|+++|.+|+|||||.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 483
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=87.39 E-value=1.1 Score=50.21 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=57.3
Q ss_pred HHHHHhc-CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCC-CCHHHHHHHHHH----HccCCc-----
Q 045843 172 LQECLRN-VGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSE-GNIRDIQEVLLK----RLDLRA----- 240 (913)
Q Consensus 172 l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~----~l~~~~----- 240 (913)
+++.|.. .+-..++|.|..|+|||+|+.++.+... -+..+++-+.+. ..+.++.+++-+ ..+...
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtv 297 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTV 297 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEE
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceE
Confidence 4455532 2334789999999999999999988643 357888888876 345555554422 111110
Q ss_pred -----cCCChH------HHHHHHHHHH--ccCCeEEEEeCCCC
Q 045843 241 -----EDHNID------QRADMISEEL--KDKSYVLFLDEVST 270 (913)
Q Consensus 241 -----~~~~~~------~~~~~l~~~l--~~kr~LlVlDdv~~ 270 (913)
.+.... ...-.+.+++ +++..||++|++..
T Consensus 298 vV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR 340 (600)
T 3vr4_A 298 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSR 340 (600)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHH
Confidence 011111 1122344555 37899999999863
No 484
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.39 E-value=0.27 Score=47.93 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 165 LNKHLKMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 165 r~~~~~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
++...+.+.+.......-.|+++|.+|+|||||...+.++.
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33444444444444455678999999999999999888654
No 485
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.38 E-value=0.26 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 045843 183 RICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 183 vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998654
No 486
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.33 E-value=0.23 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34689999999999999999987543
No 487
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.33 E-value=0.32 Score=45.29 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
-.|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 488
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.31 E-value=0.9 Score=44.57 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=23.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..|.|-|+.|+||||+++.+.....
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998876
No 489
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=87.28 E-value=0.86 Score=48.18 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=33.4
Q ss_pred HhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCC
Q 045843 176 LRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGN 224 (913)
Q Consensus 176 L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (913)
+.+...+++.+.|.||+||||+|..+..... ..=..++-|......+
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la--~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA--KVRRSVLLLSTDPAHN 57 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT--TSSSCEEEEECCSSCH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEECCCCCC
Confidence 4455678889999999999999999987776 2223455555554433
No 490
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.21 E-value=0.41 Score=45.95 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999988654
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.21 E-value=0.81 Score=44.59 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=24.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHHHhcccCCCce
Q 045843 182 KRICIWGPPGVGKTTIMENLHDAIGESRQFDF 213 (913)
Q Consensus 182 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~ 213 (913)
+.|+|-|..|+||||+++.+.+... +.++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~--~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV--KDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT--TTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH--CCCCE
Confidence 4688999999999999999999885 44543
No 492
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.17 E-value=0.8 Score=45.36 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=20.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
-..|.|.|+.|+||||+++.+.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998875
No 493
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.12 E-value=0.44 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
..+|+|+|.+|+||||++..+.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999887664
No 494
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.11 E-value=0.38 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
+...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 495
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.05 E-value=4.6 Score=54.97 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=53.5
Q ss_pred HHHHHHHhcCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHHHccCCccCC-ChHHH
Q 045843 170 KMLQECLRNVGTKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLKRLDLRAEDH-NIDQR 248 (913)
Q Consensus 170 ~~l~~~L~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~~~~ 248 (913)
..+++.+...+ +-|-++|+.|+|||++++.+..... .+ ..+.+..|...+...++..+-..+....... ..
T Consensus 1294 ~~ll~~ll~~~-~pvLL~GptGtGKT~li~~~L~~l~---~~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~--- 1365 (3245)
T 3vkg_A 1294 VDVLHAWLSEH-RPLILCGPPGSGKTMTLTSTLRAFP---DF-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGET--- 1365 (3245)
T ss_dssp HHHHHHHHHTT-CCCEEESSTTSSHHHHHHHHGGGCT---TE-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCE---
T ss_pred HHHHHHHHHCC-CcEEEECCCCCCHHHHHHHHHHhCC---CC-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCc---
Confidence 33444444433 3467899999999998877665432 22 3467778888888888877755442111000 00
Q ss_pred HHHHHHHH-ccCCeEEEEeCCCC
Q 045843 249 ADMISEEL-KDKSYVLFLDEVST 270 (913)
Q Consensus 249 ~~~l~~~l-~~kr~LlVlDdv~~ 270 (913)
+..-. .||+.++++||+.-
T Consensus 1366 ---~~~p~~~Gk~~VlFiDDiNm 1385 (3245)
T 3vkg_A 1366 ---VLRPTQLGKWLVVFCDEINL 1385 (3245)
T ss_dssp ---EEEESSTTCEEEEEETTTTC
T ss_pred ---ccCCCcCCceEEEEecccCC
Confidence 00001 26788888999864
No 496
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.02 E-value=0.43 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Q 045843 180 GTKRICIWGPPGVGKTTIMENLHD 203 (913)
Q Consensus 180 ~~~vi~I~G~gG~GKTtLa~~v~~ 203 (913)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 497
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=86.99 E-value=0.65 Score=46.97 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=29.0
Q ss_pred HHHHHHHHhcC--CCcEEEEECCCCCcHHHHHHHHHHHh
Q 045843 169 LKMLQECLRNV--GTKRICIWGPPGVGKTTIMENLHDAI 205 (913)
Q Consensus 169 ~~~l~~~L~~~--~~~vi~I~G~gG~GKTtLa~~v~~~~ 205 (913)
..-+..|+... ...-+.++|++|.|||.+|..+.+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34566777553 34579999999999999999999864
No 498
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.99 E-value=2.2 Score=48.05 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=36.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHHhcccCCCceEEEEEeCCCCCHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDAIGESRQFDFIFWVTVNSEGNIRDIQEVLLK 234 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~ 234 (913)
-.++.|.|.+|+||||+|.+++.+.... +=..++|++... +...+...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHH
Confidence 3589999999999999999998877532 123567776544 56666666544
No 499
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.96 E-value=0.22 Score=49.80 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Q 045843 181 TKRICIWGPPGVGKTTIMENLHDA 204 (913)
Q Consensus 181 ~~vi~I~G~gG~GKTtLa~~v~~~ 204 (913)
-.+|+|.|+.|+||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999998764
No 500
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=86.94 E-value=0.48 Score=53.00 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHH--hcCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 045843 164 SLNKHLKMLQECL--RNVGTKRICIWGPPGVGKTTIMENLHDAIG 206 (913)
Q Consensus 164 gr~~~~~~l~~~L--~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 206 (913)
.|.+..+.+.+.. ......+|.+.|+.|+||||+|+.+.....
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 4444555555554 233457899999999999999999999886
Done!